Query 001617
Match_columns 1044
No_of_seqs 388 out of 2179
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 3E-110 7E-115 978.6 49.1 821 17-923 1-855 (913)
2 KOG0243 Kinesin-like protein [ 100.0 6.3E-86 1.4E-90 785.9 83.7 361 7-407 47-421 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 4.9E-90 1.1E-94 802.1 33.0 364 8-410 3-381 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.6E-89 3.5E-94 788.1 30.3 357 7-409 3-368 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 2.2E-84 4.8E-89 722.1 44.9 337 5-389 3-343 (607)
6 PLN03188 kinesin-12 family pro 100.0 2.1E-78 4.5E-83 726.8 77.6 356 7-406 96-469 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 5.9E-79 1.3E-83 694.2 33.7 361 8-408 3-382 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 1.1E-78 2.4E-83 728.3 29.7 348 7-407 4-362 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 8.8E-78 1.9E-82 681.1 32.2 326 9-377 1-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 2.5E-77 5.5E-82 677.6 30.5 322 10-377 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 2.1E-75 4.5E-80 663.1 31.8 326 10-375 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6E-75 1.3E-79 663.9 33.1 337 9-384 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.6E-74 3.4E-79 660.5 33.0 333 9-386 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.3E-74 5E-79 657.3 33.8 337 9-378 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 3E-73 6.5E-78 644.1 32.1 323 10-377 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 2.5E-73 5.4E-78 641.4 31.2 308 9-375 1-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.2E-73 1.4E-77 640.9 33.3 320 9-377 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 7.5E-72 1.6E-76 629.0 30.3 308 10-375 1-319 (319)
19 cd01375 KISc_KIF9_like Kinesin 100.0 1.7E-71 3.6E-76 629.6 31.6 319 10-375 1-334 (334)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 2E-71 4.4E-76 627.0 30.2 317 10-377 1-321 (321)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1.4E-70 3.1E-75 655.4 26.7 326 8-384 313-647 (670)
22 cd01366 KISc_C_terminal Kinesi 100.0 1.4E-69 3E-74 615.0 32.5 322 8-380 1-329 (329)
23 KOG0246 Kinesin-like protein [ 100.0 5.6E-70 1.2E-74 603.5 26.9 326 4-382 203-546 (676)
24 smart00129 KISc Kinesin motor, 100.0 6.6E-69 1.4E-73 611.7 32.7 327 10-384 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 5E-67 1.1E-71 596.3 39.0 332 10-384 32-443 (809)
26 PF00225 Kinesin: Kinesin moto 100.0 2.3E-67 4.9E-72 599.6 25.0 322 16-377 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 3.2E-66 7E-71 588.4 31.8 318 10-375 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 9.1E-60 2E-64 562.0 30.1 320 9-385 22-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.2E-47 6.9E-52 396.2 18.3 179 65-356 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 7.9E-21 1.7E-25 244.6 55.5 487 378-928 826-1360(1930)
31 KOG0161 Myosin class II heavy 99.8 5.3E-17 1.2E-21 209.7 49.1 412 415-922 963-1404(1930)
32 PF01576 Myosin_tail_1: Myosin 99.4 2.1E-14 4.6E-19 180.5 0.0 325 511-922 3-346 (859)
33 PRK02224 chromosome segregatio 99.0 6.3E-05 1.4E-09 97.5 58.1 14 86-99 27-40 (880)
34 PRK02224 chromosome segregatio 99.0 9.2E-05 2E-09 96.0 59.4 56 870-925 628-688 (880)
35 PF01576 Myosin_tail_1: Myosin 99.0 6.1E-11 1.3E-15 149.6 0.0 241 656-928 2-246 (859)
36 KOG4674 Uncharacterized conser 99.0 0.00024 5.2E-09 92.8 58.3 229 536-774 949-1195(1822)
37 PRK03918 chromosome segregatio 99.0 0.00045 9.7E-09 89.7 60.7 14 86-99 27-40 (880)
38 TIGR00606 rad50 rad50. This fa 98.9 0.0011 2.3E-08 89.3 61.2 16 84-99 30-45 (1311)
39 PRK03918 chromosome segregatio 98.9 0.00094 2E-08 86.8 59.2 28 649-676 457-484 (880)
40 PF07888 CALCOCO1: Calcium bin 98.8 0.0007 1.5E-08 79.7 48.9 55 868-922 409-463 (546)
41 KOG4674 Uncharacterized conser 98.8 0.0024 5.2E-08 83.8 55.7 139 536-685 796-939 (1822)
42 TIGR02168 SMC_prok_B chromosom 98.7 0.0068 1.5E-07 81.4 60.5 16 84-99 25-40 (1179)
43 KOG4643 Uncharacterized coiled 98.7 0.0037 7.9E-08 76.5 50.2 124 535-658 312-457 (1195)
44 PF12128 DUF3584: Protein of u 98.7 0.0075 1.6E-07 80.4 57.9 102 805-914 771-872 (1201)
45 TIGR00606 rad50 rad50. This fa 98.6 0.011 2.4E-07 79.6 57.7 106 508-631 795-900 (1311)
46 TIGR02168 SMC_prok_B chromosom 98.5 0.018 4E-07 77.2 59.9 55 867-921 801-855 (1179)
47 KOG0612 Rho-associated, coiled 98.5 0.0084 1.8E-07 75.2 48.0 32 861-892 906-937 (1317)
48 PF12128 DUF3584: Protein of u 98.5 0.02 4.2E-07 76.5 60.0 26 686-711 514-539 (1201)
49 PF07888 CALCOCO1: Calcium bin 98.5 0.0075 1.6E-07 71.2 46.6 32 420-451 161-192 (546)
50 TIGR02169 SMC_prok_A chromosom 98.5 0.0057 1.2E-07 82.1 50.9 62 870-931 987-1049(1164)
51 TIGR02169 SMC_prok_A chromosom 98.5 0.0047 1E-07 82.8 49.0 14 86-99 27-40 (1164)
52 KOG0977 Nuclear envelope prote 98.4 0.0015 3.2E-08 77.0 36.2 38 396-445 41-78 (546)
53 COG1196 Smc Chromosome segrega 98.4 0.026 5.7E-07 75.2 52.8 72 870-941 978-1051(1163)
54 KOG0994 Extracellular matrix g 98.4 0.021 4.6E-07 70.6 46.7 106 363-479 1176-1296(1758)
55 KOG4643 Uncharacterized coiled 98.3 0.013 2.9E-07 71.8 42.9 180 586-774 262-450 (1195)
56 PF00038 Filament: Intermediat 98.3 0.0058 1.3E-07 69.3 39.0 98 635-774 207-304 (312)
57 KOG0612 Rho-associated, coiled 98.3 0.0054 1.2E-07 76.8 40.4 225 544-776 507-737 (1317)
58 PF10174 Cast: RIM-binding pro 98.3 0.026 5.6E-07 70.3 51.2 79 600-682 233-311 (775)
59 COG5059 KIP1 Kinesin-like prot 98.3 3.6E-08 7.7E-13 119.3 -5.7 254 6-306 302-566 (568)
60 KOG0971 Microtubule-associated 98.3 0.0096 2.1E-07 72.0 39.0 21 687-707 336-356 (1243)
61 KOG0976 Rho/Rac1-interacting s 98.3 0.025 5.5E-07 67.5 55.6 36 419-454 88-123 (1265)
62 COG1196 Smc Chromosome segrega 98.3 0.02 4.3E-07 76.3 47.2 30 67-99 12-41 (1163)
63 PRK01156 chromosome segregatio 98.2 0.059 1.3E-06 70.3 59.5 16 84-99 25-40 (895)
64 KOG4673 Transcription factor T 98.2 0.031 6.8E-07 65.9 49.3 57 647-703 576-632 (961)
65 KOG0963 Transcription factor/C 98.1 0.043 9.3E-07 64.9 43.4 84 881-965 395-478 (629)
66 PF00038 Filament: Intermediat 98.1 0.035 7.5E-07 63.0 41.8 54 542-602 15-68 (312)
67 KOG0977 Nuclear envelope prote 98.0 0.008 1.7E-07 71.0 32.0 46 640-685 151-196 (546)
68 KOG0964 Structural maintenance 98.0 0.092 2E-06 64.7 41.8 228 508-770 187-428 (1200)
69 KOG1029 Endocytic adaptor prot 98.0 0.04 8.6E-07 65.9 36.6 53 657-709 471-523 (1118)
70 KOG0996 Structural maintenance 98.0 0.11 2.5E-06 65.2 53.1 51 88-142 114-170 (1293)
71 KOG0933 Structural maintenance 97.9 0.13 2.9E-06 63.7 41.6 342 545-923 677-1035(1174)
72 PRK01156 chromosome segregatio 97.9 0.22 4.8E-06 64.9 62.2 15 53-67 27-41 (895)
73 PRK04863 mukB cell division pr 97.8 0.32 7E-06 65.4 53.6 90 587-679 382-477 (1486)
74 KOG4673 Transcription factor T 97.8 0.17 3.7E-06 60.0 47.0 37 535-571 399-435 (961)
75 PF09726 Macoilin: Transmembra 97.8 0.018 3.9E-07 71.4 30.4 20 389-408 417-436 (697)
76 KOG1029 Endocytic adaptor prot 97.8 0.16 3.5E-06 60.9 36.0 18 108-125 43-60 (1118)
77 KOG0971 Microtubule-associated 97.7 0.23 5.1E-06 60.6 43.6 14 395-408 229-242 (1243)
78 KOG0996 Structural maintenance 97.7 0.3 6.5E-06 61.7 46.9 27 907-933 652-678 (1293)
79 KOG0964 Structural maintenance 97.7 0.26 5.7E-06 60.9 41.1 28 747-774 343-370 (1200)
80 PRK04778 septation ring format 97.7 0.29 6.2E-06 60.3 46.9 57 419-477 122-178 (569)
81 PF00261 Tropomyosin: Tropomyo 97.7 0.0046 1E-07 67.1 20.7 100 543-646 132-231 (237)
82 KOG0994 Extracellular matrix g 97.6 0.45 9.9E-06 59.6 42.4 33 890-922 1710-1742(1758)
83 PF10174 Cast: RIM-binding pro 97.6 0.47 1E-05 59.4 58.3 26 543-568 236-261 (775)
84 PRK11637 AmiB activator; Provi 97.5 0.11 2.4E-06 61.7 31.8 33 985-1024 394-427 (428)
85 PF09726 Macoilin: Transmembra 97.5 0.087 1.9E-06 65.5 30.5 94 805-901 545-647 (697)
86 PHA02562 46 endonuclease subun 97.4 0.14 2.9E-06 63.2 32.0 16 84-99 29-44 (562)
87 PF05701 WEMBL: Weak chloropla 97.4 0.57 1.2E-05 56.9 58.4 24 541-564 168-191 (522)
88 PF05483 SCP-1: Synaptonemal c 97.4 0.55 1.2E-05 56.2 52.2 194 510-709 238-448 (786)
89 PF05557 MAD: Mitotic checkpoi 97.3 0.0015 3.3E-08 82.4 12.1 31 805-835 503-533 (722)
90 KOG0976 Rho/Rac1-interacting s 97.2 0.99 2.1E-05 54.7 53.2 32 609-640 281-312 (1265)
91 KOG0250 DNA repair protein RAD 97.2 1.4 2.9E-05 56.0 53.4 89 589-679 373-464 (1074)
92 PF05667 DUF812: Protein of un 97.1 1.2 2.5E-05 54.7 38.0 40 734-773 486-525 (594)
93 PF09755 DUF2046: Uncharacteri 97.1 0.61 1.3E-05 51.5 34.5 56 654-709 225-280 (310)
94 PHA02562 46 endonuclease subun 97.0 0.86 1.9E-05 56.2 32.3 25 545-569 255-279 (562)
95 PRK11281 hypothetical protein; 97.0 1.5 3.2E-05 57.5 34.8 34 677-710 221-254 (1113)
96 KOG0995 Centromere-associated 96.9 1.5 3.2E-05 51.9 47.8 61 645-705 333-393 (581)
97 KOG0962 DNA repair protein RAD 96.9 2.7 5.9E-05 54.7 56.4 70 259-338 77-147 (1294)
98 PRK10929 putative mechanosensi 96.8 2.6 5.6E-05 55.2 35.4 33 678-710 203-235 (1109)
99 KOG0946 ER-Golgi vesicle-tethe 96.8 2.3 5E-05 52.1 31.3 130 506-648 658-787 (970)
100 PRK04778 septation ring format 96.7 2.5 5.4E-05 52.2 45.5 65 614-678 200-276 (569)
101 KOG0995 Centromere-associated 96.7 2 4.3E-05 51.0 43.6 32 502-533 284-315 (581)
102 PF05667 DUF812: Protein of un 96.7 2.5 5.5E-05 51.8 34.9 71 615-689 464-536 (594)
103 PF00261 Tropomyosin: Tropomyo 96.7 1.4 3E-05 48.0 30.2 53 392-449 3-55 (237)
104 KOG0018 Structural maintenance 96.6 3.6 7.8E-05 52.1 43.1 50 902-966 995-1044(1141)
105 KOG0999 Microtubule-associated 96.6 2.3 4.9E-05 49.8 52.4 233 512-774 107-374 (772)
106 COG0556 UvrB Helicase subunit 96.6 0.0022 4.8E-08 74.1 4.7 95 47-147 3-101 (663)
107 PF15070 GOLGA2L5: Putative go 96.5 3.4 7.5E-05 50.9 56.5 33 802-834 411-443 (617)
108 COG1579 Zn-ribbon protein, pos 96.4 0.76 1.6E-05 49.4 22.5 91 615-709 85-175 (239)
109 PF09755 DUF2046: Uncharacteri 96.4 2.3 5E-05 47.1 34.5 92 617-708 104-203 (310)
110 PRK04863 mukB cell division pr 96.3 7.5 0.00016 52.9 49.6 67 805-873 565-631 (1486)
111 COG0419 SbcC ATPase involved i 96.3 6.5 0.00014 51.5 60.0 17 83-99 26-42 (908)
112 PF05557 MAD: Mitotic checkpoi 96.2 0.0012 2.5E-08 83.5 0.0 20 755-774 259-278 (722)
113 COG4942 Membrane-bound metallo 96.2 3.6 7.8E-05 47.7 31.9 39 629-667 153-191 (420)
114 PF06160 EzrA: Septation ring 96.1 5.5 0.00012 49.0 41.4 53 871-923 381-433 (560)
115 PF15066 CAGE1: Cancer-associa 96.1 3.9 8.5E-05 47.1 29.2 63 611-673 445-507 (527)
116 PF09730 BicD: Microtubule-ass 96.0 6.6 0.00014 48.9 52.3 146 508-662 30-181 (717)
117 KOG0250 DNA repair protein RAD 96.0 7.8 0.00017 49.6 51.6 30 805-834 661-690 (1074)
118 KOG2129 Uncharacterized conser 95.9 4.2 9E-05 46.1 25.4 92 607-708 160-271 (552)
119 PF05010 TACC: Transforming ac 95.8 3.1 6.6E-05 44.0 28.6 83 621-710 106-188 (207)
120 KOG0933 Structural maintenance 95.8 8.2 0.00018 48.7 52.3 17 363-379 160-176 (1174)
121 COG4942 Membrane-bound metallo 95.8 5.4 0.00012 46.3 34.0 45 588-635 38-82 (420)
122 KOG2129 Uncharacterized conser 95.7 4.9 0.00011 45.6 24.8 126 539-664 159-298 (552)
123 KOG0999 Microtubule-associated 95.7 6.1 0.00013 46.4 45.7 185 509-700 12-215 (772)
124 PF15070 GOLGA2L5: Putative go 95.6 8.4 0.00018 47.6 54.4 56 508-563 83-140 (617)
125 PF15066 CAGE1: Cancer-associa 95.6 5.8 0.00013 45.8 29.7 114 617-773 409-523 (527)
126 PF05483 SCP-1: Synaptonemal c 95.6 7.5 0.00016 47.0 56.0 36 417-452 241-276 (786)
127 PF10481 CENP-F_N: Cenp-F N-te 95.6 2.4 5.3E-05 45.5 21.1 166 587-774 17-190 (307)
128 KOG0963 Transcription factor/C 95.6 7.6 0.00017 46.7 43.9 73 587-670 195-268 (629)
129 PF05701 WEMBL: Weak chloropla 95.3 9.9 0.00021 46.4 58.8 74 850-923 367-440 (522)
130 PF05622 HOOK: HOOK protein; 95.3 0.0047 1E-07 77.9 0.0 38 642-679 361-398 (713)
131 COG0419 SbcC ATPase involved i 95.3 15 0.00032 48.2 61.6 29 542-570 319-347 (908)
132 KOG0946 ER-Golgi vesicle-tethe 95.2 11 0.00024 46.5 30.3 52 589-643 665-716 (970)
133 COG1579 Zn-ribbon protein, pos 95.2 5.7 0.00012 42.8 23.9 28 640-667 131-158 (239)
134 PF12718 Tropomyosin_1: Tropom 95.1 2.5 5.5E-05 42.1 18.8 74 508-598 17-90 (143)
135 PF14662 CCDC155: Coiled-coil 95.1 4.7 0.0001 41.6 26.4 29 651-679 95-123 (193)
136 PF09787 Golgin_A5: Golgin sub 95.0 12 0.00025 45.7 33.7 139 613-775 282-428 (511)
137 PRK09039 hypothetical protein; 94.9 3.4 7.3E-05 47.5 21.7 80 620-702 117-199 (343)
138 PF06160 EzrA: Septation ring 94.9 14 0.0003 45.6 47.7 41 878-918 467-507 (560)
139 KOG4807 F-actin binding protei 94.6 9.7 0.00021 42.8 26.3 104 576-679 409-526 (593)
140 PF14988 DUF4515: Domain of un 94.6 7.3 0.00016 41.3 26.3 79 538-621 40-123 (206)
141 PRK09039 hypothetical protein; 94.5 8.3 0.00018 44.3 23.5 107 540-668 76-182 (343)
142 PF00308 Bac_DnaA: Bacterial d 94.3 0.026 5.6E-07 60.6 2.6 49 47-99 3-51 (219)
143 COG3883 Uncharacterized protei 94.3 9.8 0.00021 41.5 25.9 45 634-678 173-217 (265)
144 PF09728 Taxilin: Myosin-like 94.3 12 0.00026 42.4 39.0 37 414-450 20-56 (309)
145 COG5185 HEC1 Protein involved 94.2 14 0.0003 42.9 36.8 64 616-679 484-547 (622)
146 PF04849 HAP1_N: HAP1 N-termin 94.2 11 0.00025 41.9 29.2 136 542-695 164-299 (306)
147 KOG1003 Actin filament-coating 94.1 8 0.00017 39.9 24.6 82 544-636 108-189 (205)
148 PF12718 Tropomyosin_1: Tropom 94.0 7.2 0.00016 38.9 20.3 85 543-642 19-103 (143)
149 PF15619 Lebercilin: Ciliary p 94.0 9.3 0.0002 40.1 25.7 66 614-679 120-185 (194)
150 PF15254 CCDC14: Coiled-coil d 93.8 5.4 0.00012 48.9 20.4 45 362-406 366-410 (861)
151 PF05622 HOOK: HOOK protein; 93.8 0.018 3.8E-07 72.8 0.0 19 586-604 265-283 (713)
152 KOG0980 Actin-binding protein 93.8 24 0.00053 44.1 35.6 52 645-696 453-504 (980)
153 KOG0980 Actin-binding protein 93.8 24 0.00053 44.1 38.1 20 623-642 390-409 (980)
154 KOG1937 Uncharacterized conser 93.8 16 0.00035 42.1 25.0 64 508-571 348-415 (521)
155 COG1340 Uncharacterized archae 93.7 14 0.00029 41.0 35.6 40 640-679 51-90 (294)
156 KOG0962 DNA repair protein RAD 93.7 32 0.0007 45.3 54.1 75 847-921 1000-1079(1294)
157 PF08317 Spc7: Spc7 kinetochor 93.6 7.4 0.00016 44.4 20.8 65 540-605 137-201 (325)
158 COG3883 Uncharacterized protei 93.6 13 0.00029 40.5 29.1 41 656-696 71-111 (265)
159 COG2805 PilT Tfp pilus assembl 93.5 0.037 8E-07 60.5 1.9 31 69-99 112-142 (353)
160 PF14662 CCDC155: Coiled-coil 93.3 11 0.00025 38.9 26.0 34 604-637 80-113 (193)
161 TIGR03185 DNA_S_dndD DNA sulfu 93.3 30 0.00064 43.6 39.8 16 84-99 30-45 (650)
162 PRK06893 DNA replication initi 93.3 0.053 1.1E-06 58.6 2.6 46 47-99 11-56 (229)
163 PRK06620 hypothetical protein; 93.2 0.053 1.2E-06 58.0 2.4 49 46-99 10-61 (214)
164 PF10168 Nup88: Nuclear pore c 93.1 8.3 0.00018 48.6 21.7 24 682-705 688-711 (717)
165 KOG1850 Myosin-like coiled-coi 93.1 17 0.00036 40.2 43.2 53 877-943 293-345 (391)
166 PF10481 CENP-F_N: Cenp-F N-te 93.0 12 0.00025 40.5 19.1 144 653-815 20-172 (307)
167 PF15254 CCDC14: Coiled-coil d 92.7 10 0.00022 46.6 20.6 73 508-584 397-476 (861)
168 PF12325 TMF_TATA_bd: TATA ele 92.4 7.4 0.00016 37.5 15.4 51 587-640 67-117 (120)
169 TIGR03007 pepcterm_ChnLen poly 92.3 15 0.00032 44.7 22.3 93 510-602 166-268 (498)
170 TIGR03185 DNA_S_dndD DNA sulfu 92.3 39 0.00085 42.5 33.8 20 814-833 393-412 (650)
171 PF10473 CENP-F_leu_zip: Leuci 92.0 14 0.0003 36.6 18.5 16 545-560 24-39 (140)
172 KOG0018 Structural maintenance 91.9 48 0.001 42.7 40.7 37 333-379 93-129 (1141)
173 KOG1937 Uncharacterized conser 91.9 29 0.00064 40.2 37.4 144 609-772 276-422 (521)
174 PRK09087 hypothetical protein; 91.7 0.11 2.5E-06 55.9 2.7 47 46-99 15-61 (226)
175 PF15619 Lebercilin: Ciliary p 91.6 20 0.00043 37.7 24.9 27 545-571 12-38 (194)
176 COG4372 Uncharacterized protei 91.5 29 0.00063 39.3 38.2 38 642-679 121-158 (499)
177 PF13851 GAS: Growth-arrest sp 91.4 21 0.00047 37.7 21.8 18 390-407 27-44 (201)
178 PRK10929 putative mechanosensi 91.2 64 0.0014 42.8 44.3 24 542-565 106-129 (1109)
179 PRK14086 dnaA chromosomal repl 91.1 0.13 2.7E-06 62.7 2.5 49 47-99 283-331 (617)
180 TIGR03007 pepcterm_ChnLen poly 90.6 47 0.001 40.3 25.0 55 352-406 127-184 (498)
181 KOG4807 F-actin binding protei 90.6 35 0.00075 38.7 29.9 115 651-774 421-540 (593)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.6 18 0.0004 35.4 19.6 28 680-707 102-129 (132)
183 PRK00149 dnaA chromosomal repl 90.6 0.33 7.1E-06 58.1 5.4 49 47-99 117-165 (450)
184 PRK14088 dnaA chromosomal repl 90.5 0.18 3.9E-06 60.0 3.0 49 46-99 99-147 (440)
185 KOG4593 Mitotic checkpoint pro 90.4 53 0.0011 40.4 52.4 25 539-563 159-183 (716)
186 KOG0249 LAR-interacting protei 90.2 48 0.001 40.7 22.1 259 395-689 5-268 (916)
187 PF06785 UPF0242: Uncharacteri 90.2 35 0.00076 38.0 20.2 70 641-710 110-179 (401)
188 PF11559 ADIP: Afadin- and alp 90.2 15 0.00033 36.8 16.3 58 623-680 91-148 (151)
189 smart00787 Spc7 Spc7 kinetocho 90.1 35 0.00076 38.7 20.6 66 540-606 132-197 (312)
190 KOG0978 E3 ubiquitin ligase in 89.8 61 0.0013 40.3 52.3 60 864-923 561-620 (698)
191 KOG4593 Mitotic checkpoint pro 89.7 59 0.0013 40.0 46.3 23 748-770 294-316 (716)
192 PRK14087 dnaA chromosomal repl 89.3 0.65 1.4E-05 55.4 6.4 48 48-99 111-158 (450)
193 KOG0804 Cytoplasmic Zn-finger 89.2 18 0.00038 42.0 17.0 39 194-238 120-159 (493)
194 PF15397 DUF4618: Domain of un 89.2 38 0.00082 37.0 27.9 34 640-673 189-222 (258)
195 PF14915 CCDC144C: CCDC144C pr 89.1 40 0.00088 37.2 35.2 91 602-706 204-294 (305)
196 PF10168 Nup88: Nuclear pore c 89.0 34 0.00073 43.3 21.3 36 614-649 588-623 (717)
197 COG0593 DnaA ATPase involved i 88.9 0.29 6.2E-06 56.9 3.0 50 46-99 81-130 (408)
198 KOG1899 LAR transmembrane tyro 88.7 23 0.0005 42.5 17.8 35 615-649 170-204 (861)
199 PF09728 Taxilin: Myosin-like 88.6 48 0.001 37.5 39.1 28 543-570 41-68 (309)
200 PRK05642 DNA replication initi 88.6 0.29 6.2E-06 53.2 2.6 48 47-99 14-62 (234)
201 PF02456 Adeno_IVa2: Adenoviru 88.4 0.33 7.2E-06 53.4 2.8 16 84-99 89-104 (369)
202 PF05010 TACC: Transforming ac 88.3 38 0.00082 35.9 28.1 45 635-679 138-182 (207)
203 TIGR00631 uvrb excinuclease AB 88.3 0.35 7.7E-06 60.2 3.4 93 49-147 2-98 (655)
204 COG2804 PulE Type II secretory 88.2 0.25 5.4E-06 58.2 1.9 29 72-100 248-276 (500)
205 PRK11281 hypothetical protein; 88.1 1.1E+02 0.0023 40.9 43.6 56 541-597 124-179 (1113)
206 COG1474 CDC6 Cdc6-related prot 88.0 0.78 1.7E-05 53.1 5.7 28 72-99 31-59 (366)
207 PRK12377 putative replication 88.0 0.42 9.1E-06 52.2 3.4 49 48-99 70-118 (248)
208 PF10473 CENP-F_leu_zip: Leuci 87.7 31 0.00067 34.2 19.3 27 545-571 52-78 (140)
209 TIGR00362 DnaA chromosomal rep 87.6 0.39 8.4E-06 56.7 3.1 50 46-99 104-153 (405)
210 PF07111 HCR: Alpha helical co 87.6 81 0.0018 38.9 64.9 62 856-917 575-659 (739)
211 PF00769 ERM: Ezrin/radixin/mo 87.5 31 0.00067 37.7 17.4 119 580-705 4-125 (246)
212 PF14988 DUF4515: Domain of un 87.5 43 0.00093 35.6 26.8 69 589-660 55-123 (206)
213 TIGR02680 conserved hypothetic 87.5 1.3E+02 0.0029 41.3 35.5 59 623-681 907-965 (1353)
214 PRK08116 hypothetical protein; 87.1 0.42 9E-06 53.0 2.8 50 47-99 80-131 (268)
215 PF15294 Leu_zip: Leucine zipp 87.1 25 0.00055 38.7 16.1 21 682-702 256-276 (278)
216 PRK06526 transposase; Provisio 87.0 0.44 9.6E-06 52.3 2.9 16 85-100 101-116 (254)
217 KOG1853 LIS1-interacting prote 87.0 47 0.001 35.5 24.2 20 640-659 30-49 (333)
218 PRK08727 hypothetical protein; 87.0 0.31 6.6E-06 52.9 1.6 44 47-99 14-58 (233)
219 PF04851 ResIII: Type III rest 87.0 0.43 9.2E-06 48.8 2.6 32 69-100 11-43 (184)
220 PRK00411 cdc6 cell division co 87.0 0.65 1.4E-05 54.4 4.5 27 73-99 45-72 (394)
221 PRK08084 DNA replication initi 86.8 0.43 9.3E-06 51.8 2.6 47 46-99 16-62 (235)
222 KOG0979 Structural maintenance 86.7 1.1E+02 0.0023 39.4 29.8 272 389-701 635-913 (1072)
223 smart00787 Spc7 Spc7 kinetocho 86.6 47 0.001 37.7 18.7 22 618-639 231-252 (312)
224 PF04849 HAP1_N: HAP1 N-termin 86.2 63 0.0014 36.2 29.6 105 585-710 164-268 (306)
225 PF04111 APG6: Autophagy prote 86.0 16 0.00034 41.5 14.7 28 652-679 107-134 (314)
226 TIGR03420 DnaA_homol_Hda DnaA 85.9 0.5 1.1E-05 50.6 2.5 46 47-99 10-55 (226)
227 TIGR01005 eps_transp_fam exopo 85.9 1.1E+02 0.0024 39.3 24.1 28 423-450 194-221 (754)
228 PF00769 ERM: Ezrin/radixin/mo 85.9 45 0.00097 36.5 17.6 124 543-695 3-126 (246)
229 PF14915 CCDC144C: CCDC144C pr 85.8 62 0.0013 35.9 39.2 57 623-679 116-172 (305)
230 COG5008 PilU Tfp pilus assembl 85.7 0.54 1.2E-05 50.6 2.6 43 70-112 115-159 (375)
231 PRK07952 DNA replication prote 85.6 0.66 1.4E-05 50.6 3.3 50 47-99 67-116 (244)
232 cd00009 AAA The AAA+ (ATPases 85.5 0.6 1.3E-05 45.3 2.7 30 70-99 7-36 (151)
233 KOG1853 LIS1-interacting prote 85.4 57 0.0012 35.0 21.8 19 636-654 163-181 (333)
234 PRK08903 DnaA regulatory inact 85.4 0.5 1.1E-05 50.9 2.2 47 47-99 13-59 (227)
235 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.3 39 0.00085 33.1 19.9 39 734-772 93-131 (132)
236 TIGR01843 type_I_hlyD type I s 85.3 84 0.0018 36.9 23.7 20 688-707 251-270 (423)
237 TIGR02928 orc1/cdc6 family rep 85.1 0.75 1.6E-05 53.3 3.7 27 73-99 30-57 (365)
238 COG1340 Uncharacterized archae 85.0 69 0.0015 35.6 38.1 17 549-565 31-47 (294)
239 COG2433 Uncharacterized conser 85.0 15 0.00032 44.2 13.9 32 110-141 164-195 (652)
240 PF05911 DUF869: Plant protein 84.7 1.3E+02 0.0028 38.4 30.9 96 541-639 48-154 (769)
241 PF13245 AAA_19: Part of AAA d 84.4 0.55 1.2E-05 41.4 1.6 25 74-99 3-27 (76)
242 KOG1899 LAR transmembrane tyro 84.3 40 0.00086 40.6 16.7 55 509-563 192-249 (861)
243 KOG0804 Cytoplasmic Zn-finger 83.9 52 0.0011 38.3 17.1 22 538-559 325-346 (493)
244 PF15450 DUF4631: Domain of un 83.5 1.1E+02 0.0023 36.6 54.3 125 509-636 164-289 (531)
245 PF08614 ATG16: Autophagy prot 83.4 16 0.00034 38.4 12.4 20 546-565 68-87 (194)
246 PF15450 DUF4631: Domain of un 83.3 1.1E+02 0.0024 36.6 53.1 26 898-923 449-474 (531)
247 PRK08181 transposase; Validate 83.0 1 2.2E-05 49.8 3.4 20 79-100 105-124 (269)
248 PF08317 Spc7: Spc7 kinetochor 83.0 92 0.002 35.6 26.0 23 617-639 73-95 (325)
249 KOG4809 Rab6 GTPase-interactin 82.8 1.1E+02 0.0025 36.5 33.1 54 626-679 313-366 (654)
250 TIGR03017 EpsF chain length de 82.4 1.2E+02 0.0025 36.2 23.2 93 510-602 176-275 (444)
251 PRK13729 conjugal transfer pil 82.3 9.1 0.0002 45.1 10.8 50 871-920 71-120 (475)
252 PF04111 APG6: Autophagy prote 82.3 26 0.00056 39.8 14.3 14 754-767 174-187 (314)
253 PF09787 Golgin_A5: Golgin sub 82.3 1.3E+02 0.0028 36.7 32.9 18 760-777 362-379 (511)
254 TIGR01843 type_I_hlyD type I s 82.2 1.1E+02 0.0024 35.9 23.2 28 652-679 138-165 (423)
255 COG1223 Predicted ATPase (AAA+ 81.8 1.2 2.6E-05 48.0 3.1 51 47-99 116-168 (368)
256 PRK06835 DNA replication prote 81.7 1 2.2E-05 51.5 2.8 29 70-99 172-200 (329)
257 smart00053 DYNc Dynamin, GTPas 81.6 2.5 5.5E-05 45.9 5.7 54 195-275 85-138 (240)
258 PF12325 TMF_TATA_bd: TATA ele 81.6 43 0.00093 32.3 13.3 89 804-911 22-110 (120)
259 PRK10436 hypothetical protein; 81.4 0.77 1.7E-05 54.7 1.8 27 73-99 209-235 (462)
260 PRK08939 primosomal protein Dn 81.4 0.92 2E-05 51.2 2.4 50 49-100 124-174 (306)
261 KOG4360 Uncharacterized coiled 80.9 46 0.00099 39.3 15.4 21 975-996 419-439 (596)
262 PRK12422 chromosomal replicati 80.7 1.3 2.7E-05 52.9 3.3 50 46-99 105-158 (445)
263 COG1382 GimC Prefoldin, chaper 80.6 50 0.0011 31.7 13.1 105 804-922 12-116 (119)
264 TIGR02533 type_II_gspE general 80.6 0.9 1.9E-05 54.7 2.0 28 73-100 233-260 (486)
265 KOG1103 Predicted coiled-coil 80.5 1E+02 0.0022 34.4 20.2 24 616-639 164-187 (561)
266 PF08232 Striatin: Striatin fa 80.5 26 0.00056 34.6 11.8 118 857-974 6-123 (134)
267 TIGR01420 pilT_fam pilus retra 80.5 0.9 2E-05 52.3 1.9 30 70-99 110-139 (343)
268 PF13401 AAA_22: AAA domain; P 80.4 0.65 1.4E-05 44.9 0.6 18 82-99 4-21 (131)
269 TIGR02538 type_IV_pilB type IV 80.2 0.82 1.8E-05 56.2 1.5 27 73-99 307-333 (564)
270 PRK10884 SH3 domain-containing 79.8 24 0.00052 37.4 12.1 14 588-601 93-106 (206)
271 PLN02939 transferase, transfer 79.6 2.1E+02 0.0045 37.4 24.7 81 806-886 258-341 (977)
272 PF00270 DEAD: DEAD/DEAH box h 79.5 3.6 7.7E-05 41.5 5.8 24 74-99 8-31 (169)
273 PF00437 T2SE: Type II/IV secr 79.3 0.9 1.9E-05 50.3 1.4 18 82-99 127-144 (270)
274 TIGR02524 dot_icm_DotB Dot/Icm 79.3 1 2.3E-05 51.9 1.9 23 77-99 129-151 (358)
275 TIGR02525 plasmid_TraJ plasmid 79.2 1.1 2.3E-05 52.0 2.0 19 81-99 148-166 (372)
276 cd01131 PilT Pilus retraction 79.2 0.81 1.7E-05 48.3 0.9 18 82-99 1-18 (198)
277 cd00046 DEXDc DEAD-like helica 79.2 0.83 1.8E-05 43.8 0.9 15 85-99 3-17 (144)
278 PRK06921 hypothetical protein; 78.6 1.6 3.5E-05 48.3 3.1 30 70-99 102-134 (266)
279 KOG0989 Replication factor C, 78.3 1.6 3.5E-05 48.2 2.9 37 63-99 37-74 (346)
280 PRK10884 SH3 domain-containing 78.1 35 0.00076 36.2 12.7 9 588-596 100-108 (206)
281 TIGR02680 conserved hypothetic 77.9 2.9E+02 0.0063 38.1 40.1 15 85-99 27-41 (1353)
282 PF13604 AAA_30: AAA domain; P 77.7 1.3 2.9E-05 46.6 2.0 27 73-99 9-35 (196)
283 smart00382 AAA ATPases associa 77.6 0.97 2.1E-05 43.2 0.9 17 83-99 3-19 (148)
284 PF13851 GAS: Growth-arrest sp 77.5 1E+02 0.0022 32.6 21.8 23 656-678 148-170 (201)
285 PF13514 AAA_27: AAA domain 77.4 2.7E+02 0.0059 37.5 55.8 58 391-450 151-208 (1111)
286 PF08614 ATG16: Autophagy prot 77.2 23 0.00049 37.2 11.1 30 805-834 74-103 (194)
287 PF10146 zf-C4H2: Zinc finger- 76.9 1E+02 0.0022 33.4 15.9 25 547-571 3-27 (230)
288 PRK10361 DNA recombination pro 76.6 1.8E+02 0.0038 35.0 26.4 33 606-638 100-132 (475)
289 COG1484 DnaC DNA replication p 76.6 2.2 4.8E-05 46.9 3.4 49 47-99 74-122 (254)
290 cd01129 PulE-GspE PulE/GspE Th 75.9 1.5 3.3E-05 48.5 1.9 26 74-99 72-97 (264)
291 PF15397 DUF4618: Domain of un 75.6 1.3E+02 0.0028 33.0 27.7 35 550-584 11-45 (258)
292 PTZ00112 origin recognition co 75.5 2.6 5.7E-05 53.1 3.9 28 72-99 769-798 (1164)
293 PF05266 DUF724: Protein of un 75.1 81 0.0018 33.0 14.2 33 649-681 150-182 (190)
294 COG5185 HEC1 Protein involved 75.1 1.8E+02 0.0039 34.2 42.5 61 509-571 261-321 (622)
295 PF01637 Arch_ATPase: Archaeal 75.0 1.6 3.4E-05 46.5 1.8 29 71-99 9-37 (234)
296 PF09738 DUF2051: Double stran 74.9 1.5E+02 0.0033 33.4 20.3 32 754-785 220-251 (302)
297 PHA02544 44 clamp loader, smal 74.9 1.7 3.7E-05 49.2 2.1 21 79-99 39-60 (316)
298 PF01935 DUF87: Domain of unkn 74.4 1.3 2.7E-05 47.8 0.8 15 85-99 26-40 (229)
299 KOG0926 DEAH-box RNA helicase 74.4 2 4.4E-05 52.7 2.5 38 82-119 271-319 (1172)
300 KOG2373 Predicted mitochondria 74.2 1.6 3.5E-05 48.7 1.5 27 72-99 261-290 (514)
301 PF01695 IstB_IS21: IstB-like 74.1 2 4.4E-05 44.5 2.2 18 82-99 47-64 (178)
302 PF09730 BicD: Microtubule-ass 73.8 2.5E+02 0.0055 35.5 58.9 98 655-774 363-461 (717)
303 PRK03992 proteasome-activating 73.7 1.3 2.9E-05 51.8 0.9 51 48-99 127-182 (389)
304 PF15290 Syntaphilin: Golgi-lo 73.5 1.1E+02 0.0024 33.6 14.7 105 633-756 64-169 (305)
305 PF07693 KAP_NTPase: KAP famil 73.5 4 8.6E-05 46.3 4.6 57 68-141 6-62 (325)
306 PF00448 SRP54: SRP54-type pro 73.5 1.4 2.9E-05 46.5 0.7 16 84-99 3-18 (196)
307 PRK07003 DNA polymerase III su 73.5 2.7 5.9E-05 52.4 3.3 41 50-99 14-55 (830)
308 PF07798 DUF1640: Protein of u 73.4 1.2E+02 0.0025 31.4 17.4 44 652-695 107-150 (177)
309 TIGR01242 26Sp45 26S proteasom 73.4 3.4 7.4E-05 47.9 4.1 52 47-99 117-173 (364)
310 PF00004 AAA: ATPase family as 73.2 1.4 3.1E-05 42.3 0.8 15 85-99 1-15 (132)
311 PF03148 Tektin: Tektin family 73.0 2E+02 0.0042 33.8 31.2 295 615-931 20-365 (384)
312 PF13207 AAA_17: AAA domain; P 72.7 1.5 3.3E-05 41.7 0.9 16 84-99 1-16 (121)
313 PF07111 HCR: Alpha helical co 72.7 2.5E+02 0.0055 34.9 59.1 28 848-875 542-569 (739)
314 TIGR02782 TrbB_P P-type conjug 72.6 1.9 4.2E-05 48.6 1.7 28 71-99 122-149 (299)
315 PLN00020 ribulose bisphosphate 72.3 3 6.5E-05 47.8 3.1 52 47-99 110-165 (413)
316 PF12846 AAA_10: AAA-like doma 72.0 1.6 3.4E-05 48.7 0.9 18 82-99 1-18 (304)
317 PF13191 AAA_16: AAA ATPase do 71.9 1.6 3.4E-05 44.9 0.8 29 71-99 13-41 (185)
318 PF13479 AAA_24: AAA domain 71.8 1.7 3.7E-05 46.4 1.0 19 82-100 3-21 (213)
319 PTZ00361 26 proteosome regulat 71.7 4 8.8E-05 48.4 4.2 50 49-99 180-234 (438)
320 smart00763 AAA_PrkA PrkA AAA d 71.6 6.3 0.00014 45.3 5.5 65 51-121 49-142 (361)
321 TIGR00634 recN DNA repair prot 71.3 2.6E+02 0.0057 34.5 24.3 14 86-99 26-39 (563)
322 PRK13900 type IV secretion sys 71.3 2.3 4.9E-05 48.7 2.0 28 71-99 150-177 (332)
323 PRK09343 prefoldin subunit bet 71.2 89 0.0019 30.2 12.6 45 878-922 73-117 (121)
324 PF06705 SF-assemblin: SF-asse 71.2 1.6E+02 0.0035 32.1 28.9 76 582-657 115-195 (247)
325 PF11559 ADIP: Afadin- and alp 71.1 1.2E+02 0.0025 30.4 16.9 39 614-652 75-113 (151)
326 PF05700 BCAS2: Breast carcino 70.9 1.6E+02 0.0034 31.7 18.5 31 609-639 186-216 (221)
327 PTZ00454 26S protease regulato 70.7 1.5 3.3E-05 51.4 0.4 52 47-99 140-196 (398)
328 KOG0982 Centrosomal protein Nu 70.7 2.1E+02 0.0046 33.3 23.3 205 420-686 219-431 (502)
329 TIGR01005 eps_transp_fam exopo 70.4 3.2E+02 0.0069 35.1 27.3 55 540-601 196-250 (754)
330 KOG0978 E3 ubiquitin ligase in 70.4 2.9E+02 0.0063 34.7 53.9 32 860-891 564-595 (698)
331 PF05673 DUF815: Protein of un 70.3 4.6 9.9E-05 43.8 3.8 46 48-99 23-69 (249)
332 PF14073 Cep57_CLD: Centrosome 70.0 1.4E+02 0.003 30.8 22.2 46 594-639 116-161 (178)
333 PRK09183 transposase/IS protei 69.8 2.8 6E-05 46.3 2.1 19 79-99 101-119 (259)
334 PRK13894 conjugal transfer ATP 69.7 2.4 5.1E-05 48.3 1.6 27 72-99 139-165 (319)
335 PF13514 AAA_27: AAA domain 69.7 4E+02 0.0087 36.0 51.8 13 87-99 1-13 (1111)
336 cd01130 VirB11-like_ATPase Typ 69.5 2.9 6.2E-05 43.6 2.1 28 71-99 15-42 (186)
337 PRK12402 replication factor C 69.3 3.3 7.2E-05 47.2 2.8 21 79-99 33-53 (337)
338 TIGR02338 gimC_beta prefoldin, 68.6 77 0.0017 30.0 11.4 100 804-917 9-108 (110)
339 PRK13833 conjugal transfer pro 68.6 2.6 5.7E-05 47.9 1.7 27 72-99 135-161 (323)
340 PF13086 AAA_11: AAA domain; P 68.4 2.6 5.5E-05 44.9 1.5 25 74-99 10-34 (236)
341 PRK12723 flagellar biosynthesi 68.2 4.2 9E-05 47.5 3.2 18 82-99 174-191 (388)
342 PRK06547 hypothetical protein; 67.6 3.7 8.1E-05 42.2 2.4 29 71-99 4-32 (172)
343 COG4962 CpaF Flp pilus assembl 67.5 3 6.4E-05 47.1 1.8 28 71-99 163-190 (355)
344 KOG0953 Mitochondrial RNA heli 67.4 4.2 9.2E-05 48.2 3.0 43 84-126 193-238 (700)
345 KOG2751 Beclin-like protein [S 66.7 2.2E+02 0.0047 33.3 16.1 33 610-642 195-227 (447)
346 TIGR02903 spore_lon_C ATP-depe 66.7 2.6 5.6E-05 52.4 1.3 43 48-99 150-192 (615)
347 TIGR03499 FlhF flagellar biosy 66.6 5.2 0.00011 44.7 3.5 16 84-99 196-211 (282)
348 PF10212 TTKRSYEDQ: Predicted 66.6 2.9E+02 0.0064 33.3 22.9 100 579-678 411-514 (518)
349 PF13870 DUF4201: Domain of un 66.3 1.6E+02 0.0036 30.2 19.8 163 425-630 1-177 (177)
350 TIGR03015 pepcterm_ATPase puta 66.2 4.1 8.9E-05 44.8 2.6 25 75-99 36-60 (269)
351 PF06818 Fez1: Fez1; InterPro 65.4 1.9E+02 0.0041 30.6 20.9 20 587-606 86-105 (202)
352 PF10146 zf-C4H2: Zinc finger- 65.3 2.1E+02 0.0045 31.0 15.5 11 634-644 50-60 (230)
353 TIGR00635 ruvB Holliday juncti 65.2 4.4 9.4E-05 45.7 2.6 16 84-99 32-47 (305)
354 PHA00729 NTP-binding motif con 65.1 4.4 9.6E-05 43.5 2.4 29 71-99 6-34 (226)
355 PF02562 PhoH: PhoH-like prote 64.9 4 8.7E-05 43.2 2.1 19 81-99 18-36 (205)
356 PRK13851 type IV secretion sys 64.6 2.8 6.1E-05 48.1 0.9 28 71-99 152-179 (344)
357 PF04912 Dynamitin: Dynamitin 64.5 2.9E+02 0.0062 32.4 24.2 66 637-702 322-387 (388)
358 COG1219 ClpX ATP-dependent pro 64.4 3.1 6.6E-05 46.3 1.1 18 82-99 97-114 (408)
359 PRK13342 recombination factor 64.3 3.6 7.7E-05 48.7 1.8 27 73-99 27-53 (413)
360 PF00580 UvrD-helicase: UvrD/R 64.3 3.1 6.8E-05 46.6 1.2 20 80-99 11-30 (315)
361 PRK15424 propionate catabolism 64.2 10 0.00022 46.3 5.5 33 181-213 321-353 (538)
362 KOG4302 Microtubule-associated 64.1 3.7E+02 0.0081 33.6 27.5 51 804-859 225-275 (660)
363 PF09304 Cortex-I_coil: Cortex 64.1 1.3E+02 0.0028 28.3 15.3 22 542-563 6-27 (107)
364 PF00910 RNA_helicase: RNA hel 64.0 2.5 5.5E-05 39.7 0.4 15 85-99 1-15 (107)
365 PF13671 AAA_33: AAA domain; P 64.0 3 6.6E-05 40.9 0.9 15 85-99 2-16 (143)
366 COG2433 Uncharacterized conser 63.6 95 0.002 37.8 13.0 6 353-358 296-301 (652)
367 PF07724 AAA_2: AAA domain (Cd 63.5 3 6.4E-05 42.9 0.8 17 83-99 4-20 (171)
368 COG2256 MGS1 ATPase related to 63.5 3.6 7.9E-05 47.2 1.5 43 50-98 22-64 (436)
369 PRK13764 ATPase; Provisional 63.3 3.7 8E-05 50.5 1.6 24 76-99 251-274 (602)
370 COG1201 Lhr Lhr-like helicases 63.1 8.1 0.00017 49.0 4.5 58 74-145 31-88 (814)
371 PF05970 PIF1: PIF1-like helic 62.9 5.8 0.00012 46.1 3.1 35 61-99 5-39 (364)
372 COG1222 RPT1 ATP-dependent 26S 62.1 7.5 0.00016 44.1 3.6 89 10-99 94-202 (406)
373 TIGR01000 bacteriocin_acc bact 62.1 3.4E+02 0.0074 32.5 24.8 24 509-532 101-124 (457)
374 PF07728 AAA_5: AAA domain (dy 61.8 3.3 7.2E-05 40.6 0.7 15 85-99 2-16 (139)
375 KOG0288 WD40 repeat protein Ti 61.7 3.1E+02 0.0068 31.9 16.0 65 612-676 6-73 (459)
376 smart00487 DEXDc DEAD-like hel 61.4 5.5 0.00012 40.6 2.4 23 76-99 19-41 (201)
377 PRK15455 PrkA family serine pr 61.3 15 0.00032 44.8 6.1 68 51-123 75-164 (644)
378 PF10186 Atg14: UV radiation r 61.2 2.7E+02 0.0058 30.9 21.0 18 807-824 254-271 (302)
379 TIGR02788 VirB11 P-type DNA tr 61.0 5.7 0.00012 45.0 2.6 29 70-99 133-161 (308)
380 PF01580 FtsK_SpoIIIE: FtsK/Sp 60.9 3.3 7.3E-05 43.7 0.6 16 84-99 40-55 (205)
381 PF13238 AAA_18: AAA domain; P 60.8 3.7 8E-05 39.2 0.9 15 85-99 1-15 (129)
382 PRK13341 recombination factor 60.8 5.3 0.00011 50.5 2.4 21 79-99 49-69 (725)
383 PF12329 TMF_DNA_bd: TATA elem 60.8 1.2E+02 0.0025 26.7 10.4 71 542-630 2-72 (74)
384 TIGR03319 YmdA_YtgF conserved 60.4 3.9E+02 0.0085 32.6 22.0 151 600-781 27-177 (514)
385 PF08581 Tup_N: Tup N-terminal 60.4 1.3E+02 0.0027 26.9 11.5 20 610-629 55-74 (79)
386 CHL00081 chlI Mg-protoporyphyr 60.2 3.2 7E-05 47.6 0.4 44 47-99 12-55 (350)
387 TIGR03345 VI_ClpV1 type VI sec 60.2 15 0.00032 47.7 6.3 29 71-99 579-613 (852)
388 PF04912 Dynamitin: Dynamitin 60.1 3.4E+02 0.0074 31.8 17.7 20 389-408 93-112 (388)
389 PRK14722 flhF flagellar biosyn 59.8 3.9 8.5E-05 47.3 1.0 18 82-99 137-154 (374)
390 COG1419 FlhF Flagellar GTP-bin 59.8 6.7 0.00014 45.5 2.8 18 82-99 203-220 (407)
391 KOG0736 Peroxisome assembly fa 59.8 17 0.00036 45.2 6.2 23 106-128 784-806 (953)
392 PF03215 Rad17: Rad17 cell cyc 59.7 5.4 0.00012 48.4 2.2 30 70-99 31-62 (519)
393 PF05496 RuvB_N: Holliday junc 59.3 8.2 0.00018 41.4 3.2 44 50-99 22-67 (233)
394 COG1382 GimC Prefoldin, chaper 59.1 1.7E+02 0.0038 28.1 12.3 32 597-628 12-43 (119)
395 PF06008 Laminin_I: Laminin Do 58.8 2.8E+02 0.0062 30.5 28.0 252 346-630 6-262 (264)
396 cd00268 DEADc DEAD-box helicas 58.7 6.4 0.00014 41.2 2.3 23 75-99 31-53 (203)
397 KOG4403 Cell surface glycoprot 58.6 3.5E+02 0.0077 31.5 19.7 13 732-744 335-349 (575)
398 cd00632 Prefoldin_beta Prefold 58.3 1.6E+02 0.0035 27.5 11.5 28 805-832 6-33 (105)
399 PF11932 DUF3450: Protein of u 58.2 1.7E+02 0.0037 32.0 13.5 14 992-1005 200-214 (251)
400 TIGR02881 spore_V_K stage V sp 58.2 4.8 0.0001 44.4 1.3 18 82-99 42-59 (261)
401 COG1136 SalX ABC-type antimicr 58.1 4.4 9.6E-05 43.5 1.0 16 84-99 33-48 (226)
402 PF11932 DUF3450: Protein of u 57.7 2.9E+02 0.0062 30.2 15.6 19 612-630 49-67 (251)
403 PF08172 CASP_C: CASP C termin 57.3 1.4E+02 0.003 32.8 12.2 48 578-642 83-130 (248)
404 PF09731 Mitofilin: Mitochondr 57.3 4.6E+02 0.01 32.5 23.4 150 508-665 254-406 (582)
405 KOG1265 Phospholipase C [Lipid 57.3 5.3E+02 0.011 33.1 20.3 143 592-762 1026-1176(1189)
406 TIGR01817 nifA Nif-specific re 57.3 20 0.00043 44.0 6.6 44 49-99 193-236 (534)
407 PF13555 AAA_29: P-loop contai 57.3 4.6 0.0001 34.1 0.7 15 85-99 26-40 (62)
408 KOG0579 Ste20-like serine/thre 57.1 4.7E+02 0.01 32.5 42.8 73 828-900 1041-1118(1187)
409 KOG0739 AAA+-type ATPase [Post 57.1 5.1 0.00011 44.1 1.2 79 49-128 130-226 (439)
410 KOG0579 Ste20-like serine/thre 57.1 4.7E+02 0.01 32.5 45.7 55 537-597 833-887 (1187)
411 PF12709 Kinetocho_Slk19: Cent 56.8 1.5E+02 0.0032 26.9 10.0 36 536-571 36-75 (87)
412 KOG2685 Cystoskeletal protein 56.6 3.8E+02 0.0083 31.3 30.9 264 640-929 73-390 (421)
413 KOG0727 26S proteasome regulat 56.5 14 0.0003 39.8 4.2 115 11-126 99-247 (408)
414 PTZ00424 helicase 45; Provisio 56.2 6.4 0.00014 46.1 2.0 25 73-99 58-82 (401)
415 TIGR01241 FtsH_fam ATP-depende 55.9 5.5 0.00012 48.3 1.4 51 47-99 50-105 (495)
416 PRK09841 cryptic autophosphory 55.9 2.9E+02 0.0063 35.4 16.8 159 727-945 261-422 (726)
417 PLN03025 replication factor C 55.9 8.4 0.00018 43.8 2.8 17 83-99 35-51 (319)
418 KOG4360 Uncharacterized coiled 55.7 4.3E+02 0.0094 31.6 22.9 66 637-710 202-267 (596)
419 PF09738 DUF2051: Double stran 55.2 2.7E+02 0.0058 31.5 14.3 70 847-919 100-169 (302)
420 PRK00106 hypothetical protein; 55.1 4.8E+02 0.01 32.0 25.5 38 670-707 123-160 (535)
421 PRK00440 rfc replication facto 55.0 8.7 0.00019 43.3 2.8 21 79-99 35-55 (319)
422 PRK10536 hypothetical protein; 54.6 7.3 0.00016 42.7 1.9 18 82-99 74-91 (262)
423 PHA02244 ATPase-like protein 54.6 10 0.00022 43.7 3.1 28 70-99 109-136 (383)
424 PRK14974 cell division protein 54.1 13 0.00028 42.6 4.0 18 82-99 140-157 (336)
425 PRK12704 phosphodiesterase; Pr 54.1 4.9E+02 0.011 31.8 22.0 151 600-781 33-183 (520)
426 TIGR01000 bacteriocin_acc bact 54.0 4.6E+02 0.0099 31.4 21.6 26 544-569 171-196 (457)
427 COG1125 OpuBA ABC-type proline 53.9 5.6 0.00012 43.1 0.9 13 87-99 32-44 (309)
428 PF12775 AAA_7: P-loop contain 53.9 6.9 0.00015 43.5 1.6 26 73-99 25-50 (272)
429 TIGR03819 heli_sec_ATPase heli 53.8 17 0.00036 41.8 4.8 29 70-99 167-195 (340)
430 KOG2543 Origin recognition com 53.6 6 0.00013 45.2 1.1 38 83-143 31-68 (438)
431 PRK11776 ATP-dependent RNA hel 53.5 8 0.00017 46.4 2.3 23 75-99 36-58 (460)
432 PRK11331 5-methylcytosine-spec 53.5 7.3 0.00016 46.1 1.8 25 73-99 187-211 (459)
433 cd01126 TraG_VirD4 The TraG/Tr 53.3 5.7 0.00012 46.4 0.9 15 85-99 2-16 (384)
434 PRK11448 hsdR type I restricti 53.2 8.9 0.00019 50.9 2.7 29 71-100 423-451 (1123)
435 PF10498 IFT57: Intra-flagella 53.1 3.5E+02 0.0076 31.4 15.2 10 316-325 86-95 (359)
436 PF09304 Cortex-I_coil: Cortex 53.0 2E+02 0.0044 27.0 14.2 28 804-831 15-42 (107)
437 PRK00771 signal recognition pa 53.0 13 0.00029 44.1 3.9 18 82-99 95-112 (437)
438 TIGR01618 phage_P_loop phage n 53.0 5.9 0.00013 42.5 0.9 19 82-100 12-30 (220)
439 PRK10361 DNA recombination pro 52.7 4.9E+02 0.011 31.4 26.7 52 623-674 71-122 (475)
440 PF06048 DUF927: Domain of unk 52.7 11 0.00023 42.3 2.9 29 70-99 182-210 (286)
441 PRK11519 tyrosine kinase; Prov 52.7 4.3E+02 0.0093 33.8 17.6 30 732-761 266-296 (719)
442 KOG0744 AAA+-type ATPase [Post 52.6 14 0.00031 41.3 3.7 18 82-99 177-194 (423)
443 PF06414 Zeta_toxin: Zeta toxi 52.3 6.3 0.00014 41.4 1.0 18 82-99 15-32 (199)
444 PRK04195 replication factor C 52.2 9.4 0.0002 46.2 2.6 30 70-99 26-56 (482)
445 TIGR02237 recomb_radB DNA repa 52.2 7.2 0.00016 41.2 1.4 25 75-99 2-29 (209)
446 TIGR02902 spore_lonB ATP-depen 52.1 6.6 0.00014 48.0 1.2 44 47-99 60-103 (531)
447 TIGR00348 hsdR type I site-spe 52.0 9.9 0.00022 47.9 2.8 31 69-100 246-281 (667)
448 KOG3759 Uncharacterized RUN do 52.0 4.6E+02 0.01 30.9 17.3 16 586-601 147-162 (621)
449 PF03915 AIP3: Actin interacti 52.0 4.4E+02 0.0095 31.3 15.9 27 748-774 294-320 (424)
450 PF09744 Jnk-SapK_ap_N: JNK_SA 51.8 2.8E+02 0.006 28.2 15.9 21 627-647 132-152 (158)
451 CHL00176 ftsH cell division pr 51.6 6.7 0.00015 48.9 1.2 17 83-99 217-233 (638)
452 COG4026 Uncharacterized protei 51.5 1.8E+02 0.0039 30.8 11.0 35 605-639 170-204 (290)
453 TIGR01243 CDC48 AAA family ATP 51.4 12 0.00026 47.7 3.5 52 47-99 173-229 (733)
454 COG0606 Predicted ATPase with 51.3 6.2 0.00014 46.5 0.8 28 79-114 197-224 (490)
455 PF06785 UPF0242: Uncharacteri 51.2 4.1E+02 0.0089 30.0 20.1 61 617-677 160-220 (401)
456 PF06309 Torsin: Torsin; Inte 51.1 15 0.00033 35.7 3.2 30 70-99 37-70 (127)
457 PRK11192 ATP-dependent RNA hel 50.9 9.2 0.0002 45.5 2.2 24 74-99 32-55 (434)
458 PF08581 Tup_N: Tup N-terminal 50.4 1.9E+02 0.004 25.8 10.6 41 554-598 34-74 (79)
459 cd01123 Rad51_DMC1_radA Rad51_ 50.2 8.9 0.00019 41.2 1.8 29 71-99 5-36 (235)
460 PRK06067 flagellar accessory p 50.1 11 0.00023 40.8 2.3 29 71-99 11-42 (234)
461 COG0497 RecN ATPase involved i 50.0 5.7E+02 0.012 31.4 23.3 63 648-710 270-338 (557)
462 PRK04328 hypothetical protein; 50.0 10 0.00022 41.5 2.2 27 72-98 10-39 (249)
463 PRK09361 radB DNA repair and r 50.0 9.9 0.00021 40.7 2.1 29 71-99 9-40 (225)
464 TIGR03752 conj_TIGR03752 integ 49.9 1.8E+02 0.0039 34.7 12.2 52 625-679 86-137 (472)
465 PRK14962 DNA polymerase III su 49.9 11 0.00023 45.4 2.5 42 49-99 11-53 (472)
466 PF03962 Mnd1: Mnd1 family; I 49.8 3.3E+02 0.0071 28.5 14.4 33 539-571 63-95 (188)
467 KOG2991 Splicing regulator [RN 49.7 3.7E+02 0.0081 29.2 20.9 196 415-657 107-302 (330)
468 PRK05022 anaerobic nitric oxid 49.7 29 0.00063 42.2 6.3 43 50-99 185-227 (509)
469 PF00063 Myosin_head: Myosin h 49.5 11 0.00023 47.9 2.6 22 78-99 81-102 (689)
470 PRK07764 DNA polymerase III su 49.5 18 0.0004 46.4 4.6 42 49-99 12-54 (824)
471 cd01120 RecA-like_NTPases RecA 49.4 7 0.00015 38.7 0.7 15 85-99 2-16 (165)
472 PF06156 DUF972: Protein of un 49.4 80 0.0017 29.8 7.7 37 415-451 21-57 (107)
473 PF06005 DUF904: Protein of un 49.4 1.8E+02 0.0039 25.4 11.0 50 870-919 19-68 (72)
474 TIGR01010 BexC_CtrB_KpsE polys 49.3 4E+02 0.0086 30.8 15.4 55 510-564 175-233 (362)
475 cd01127 TrwB Bacterial conjuga 49.3 7.7 0.00017 45.9 1.2 18 82-99 42-59 (410)
476 PRK04837 ATP-dependent RNA hel 49.3 9.9 0.00021 45.1 2.1 23 75-99 40-62 (423)
477 PF13173 AAA_14: AAA domain 49.2 7.7 0.00017 37.6 1.0 16 84-99 4-19 (128)
478 PHA03332 membrane glycoprotein 49.1 6.4E+02 0.014 33.0 17.1 112 508-627 894-1005(1328)
479 PRK09270 nucleoside triphospha 49.1 15 0.00033 39.5 3.3 37 63-99 13-50 (229)
480 COG1126 GlnQ ABC-type polar am 49.0 7.3 0.00016 41.3 0.8 15 85-99 31-45 (240)
481 PLN03229 acetyl-coenzyme A car 49.0 6.6E+02 0.014 31.8 25.9 12 263-274 245-256 (762)
482 PRK11519 tyrosine kinase; Prov 48.9 4.4E+02 0.0096 33.7 16.9 54 510-563 272-329 (719)
483 PF05729 NACHT: NACHT domain 48.7 7.8 0.00017 38.6 1.0 16 84-99 2-17 (166)
484 PF06156 DUF972: Protein of un 48.7 1.1E+02 0.0024 28.9 8.5 53 859-911 5-57 (107)
485 PF12795 MscS_porin: Mechanose 48.4 3.9E+02 0.0084 29.0 24.3 161 544-709 37-211 (240)
486 TIGR01010 BexC_CtrB_KpsE polys 48.4 3.4E+02 0.0074 31.3 14.6 38 894-931 275-312 (362)
487 TIGR01650 PD_CobS cobaltochela 48.4 11 0.00023 43.0 2.0 26 72-99 56-81 (327)
488 TIGR02030 BchI-ChlI magnesium 48.3 13 0.00028 42.7 2.7 42 49-99 1-42 (337)
489 PRK10865 protein disaggregatio 48.3 15 0.00032 47.7 3.6 45 49-99 565-615 (857)
490 PF10236 DAP3: Mitochondrial r 48.2 11 0.00025 42.6 2.3 27 73-99 14-40 (309)
491 PF02841 GBP_C: Guanylate-bind 48.2 4.4E+02 0.0096 29.6 15.7 120 517-664 178-297 (297)
492 PRK09343 prefoldin subunit bet 48.1 2.6E+02 0.0057 26.9 11.8 91 591-681 7-115 (121)
493 PF00735 Septin: Septin; Inte 48.0 5.5 0.00012 44.4 -0.3 21 79-99 1-21 (281)
494 PRK11889 flhF flagellar biosyn 47.9 16 0.00035 42.6 3.3 39 61-99 215-258 (436)
495 PF13476 AAA_23: AAA domain; P 47.9 7.9 0.00017 40.1 0.9 18 82-99 19-36 (202)
496 PRK10416 signal recognition pa 47.8 16 0.00035 41.6 3.4 39 61-99 83-131 (318)
497 PF12774 AAA_6: Hydrolytic ATP 47.8 13 0.00028 40.3 2.5 49 49-99 1-49 (231)
498 PRK15178 Vi polysaccharide exp 47.7 5.5E+02 0.012 30.6 16.7 125 511-643 248-386 (434)
499 PF14992 TMCO5: TMCO5 family 47.7 4.4E+02 0.0095 29.3 17.1 153 509-673 15-182 (280)
500 KOG3859 Septins (P-loop GTPase 47.5 3.4E+02 0.0073 30.1 12.8 81 538-639 319-404 (406)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-110 Score=978.55 Aligned_cols=821 Identities=42% Similarity=0.583 Sum_probs=705.7
Q ss_pred eCCCCCchhccCCcceEEEeCCCCceeecC-ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCc
Q 001617 17 VRPLIGDERAQGCKDCVAVVPGKPQVQIGT-HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGK 95 (1044)
Q Consensus 17 vRP~~~~E~~~~~~~~v~~~~~~~~v~~~~-~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGK 95 (1044)
|||+...|..+||..|+.+.|+.|+|.++. .+|+||+||++. +.|.++|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 799999999999999999999999999875 689999999965 559999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCc-ccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCCCCcccCCCCC
Q 001617 96 TYTMGTGFKDGYQT-GIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKP 174 (1044)
Q Consensus 96 T~Tm~g~~~~~~~~-Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1044)
||||++++...... |+|||++.++|.+|..... ..|.|+|||+|||++.|+|||.|.. .+.
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 99999986654444 9999999999999998654 7899999999999999999998643 133
Q ss_pred CceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCCCCCCCCCCCC
Q 001617 175 PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNES 254 (1044)
Q Consensus 175 ~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~~~~~~~~~~~ 254 (1044)
++.+++ +.|++.+.|+++++|.+..++..+|..|...|++++|+||..|||||+||||++++......
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 488888 88999999999999999999999999999999999999999999999999999998766442
Q ss_pred CCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCcccccccccCCC
Q 001617 255 MNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGG 334 (1044)
Q Consensus 255 ~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkLTrlLq~~Lgg 334 (1044)
...++++|||||||||||.++|++.|.|++||++||.+|++||+||+||++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 336789999999999999999999999999999999999999999999999876 679999999999999999999
Q ss_pred CcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 001617 335 NSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSS 414 (1044)
Q Consensus 335 ns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~~ei~kLr~qi~~L~~eL~~~~~~~~ 414 (1044)
|+.|+|| +||||+++|+.||++||+||+||++|+|+|++|.||...++..|+.+|+.|+.+|....+...
T Consensus 285 ns~tlmi----------aCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~ 354 (913)
T KOG0244|consen 285 NSDTLMI----------ACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDEL 354 (913)
T ss_pred Ccceeee----------eecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999976554445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC-CCCcccHHHHHHHhh------------hhhcccc
Q 001617 415 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG-SPCPLKSDGLKRSLN------------SIEQTDY 481 (1044)
Q Consensus 415 ~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~-~~l~~k~~eLe~~L~------------~~~~~~~ 481 (1044)
..++..+..++..++..+..+..++++....+.....+...++.. .++...+......+. .+...-.
T Consensus 355 ~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 434 (913)
T KOG0244|consen 355 DAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLE 434 (913)
T ss_pred hhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccc
Confidence 578899999999999999999999888887775544433322211 111111111100000 0111111
Q ss_pred ccccc-------CC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHH
Q 001617 482 QMGEN-------IT--GDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAEL 550 (1044)
Q Consensus 482 ~~~e~-------~~--~~~~e~~e~~~e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eL 550 (1044)
+++.. .. +++.........+++...+.++..++.+++++|+.||..++.+... ....++++|+.++..|
T Consensus 435 ~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~l 514 (913)
T KOG0244|consen 435 PVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTL 514 (913)
T ss_pred ccccccccccccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhH
Confidence 11110 01 1111112224567788889999999999999999999999998753 5677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001617 551 EDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQF 630 (1044)
Q Consensus 551 e~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~ 630 (1044)
+.++..++.|++.+..++... ...+.++.+.+.++++.|+.++++|+++...+..|.+.+.+.+.....|..+|..
T Consensus 515 e~e~~~le~E~~~l~~el~~~----~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~ 590 (913)
T KOG0244|consen 515 EAEKSPLESERSRLRNELNVF----NRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHI 590 (913)
T ss_pred HHHhcccccccHHHHHHHHhh----hHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 999999999999999999998 3388999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 631 IKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 631 ~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
+|.++++|+++|+++.+.|+.|++..+|++.+++.+.++.++++..++....++..+|+++++|+.+++++|++.+..++
T Consensus 591 ~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~ 670 (913)
T KOG0244|consen 591 AKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRA 670 (913)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhh-ccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCcCcc
Q 001617 711 SSA-RENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGK 789 (1044)
Q Consensus 711 ~~~-r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~~~~~ 789 (1044)
... .....+. ......+...|+++|+|++..+.+++..+..+.+.|+.+..++..++.+.
T Consensus 671 ~~~s~~~~~~~------~~~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~------------- 731 (913)
T KOG0244|consen 671 LTSSGQVTLGD------NGASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG------------- 731 (913)
T ss_pred hcCCCccchhh------cCchhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 552 2222212 22566778999999999999999999999999999999999999986542
Q ss_pred ccchhhccCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHH
Q 001617 790 NGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARC 869 (1044)
Q Consensus 790 ~~~~~~~~l~~~~~~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ 869 (1044)
...|..|+.++...+.+|++|...+..++.+.+.+ .+|+++.++.+|++.+.++++.++..++
T Consensus 732 --------------~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~---~~w~~v~t~~~ak~~~~~~~~~~~~~r~ 794 (913)
T KOG0244|consen 732 --------------KKLLGSLEPVMELTSDQISSMQDLIITASKDERIK---MRWEAVGTLSEAKNFEPYLYDGIVALRI 794 (913)
T ss_pred --------------HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHH---HHHhcccccccchhhhHHHHHHHHHHHH
Confidence 36889999999999999999999999998877644 3999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001617 870 QLWE-------KDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 923 (1044)
Q Consensus 870 ql~e-------~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~ 923 (1044)
+... ....+.++..++.+....++..+.+......+.....+.+..+.....+.
T Consensus 795 ~~~~~~~~~re~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~ 855 (913)
T KOG0244|consen 795 QGDNLFSGSREKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQM 855 (913)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8774 44556677777766666677777777777777777777777777666554
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-86 Score=785.92 Aligned_cols=361 Identities=40% Similarity=0.636 Sum_probs=315.2
Q ss_pred CCCceEEEEEeCCCCCchhccCCcceEEEeCCCCceee--c------CceeEeceecCCCCCChHHHHHHhhHhHHHHhh
Q 001617 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--G------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1044)
Q Consensus 7 ~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~--~------~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l 78 (1044)
...+|+|+|||||++.+|....++.+|.+.+....|.+ + .+.|+||.||||.. +|.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHh
Confidence 34589999999999999988888888877765443433 1 46799999999875 599999999999999999
Q ss_pred cCCCccEEEecccCCCcccccccCCC-----CCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCC
Q 001617 79 QGYNATVLAYGQTGSGKTYTMGTGFK-----DGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm~g~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1044)
.|||||||||||||+||||||.|+.. .+..+|||||++.+||+.++.. +.+|+|.|||+|+|||+++|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999988643 5678999999999999999874 3799999999999999999999986
Q ss_pred CCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEE
Q 001617 154 CLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233 (1044)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti 233 (1044)
.... .....-+.+++. +..|||+|.|+.+++|+++.|++.+|.+|...|.+++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 4210 111111222222 66899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCC
Q 001617 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKE 313 (1044)
Q Consensus 234 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~ 313 (1044)
+|.-..... ...+-+.+|+|+||||||||...++|+.+.|.+|++.||+||++||+||+||.+...
T Consensus 273 tvhike~t~-----------~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~--- 338 (1041)
T KOG0243|consen 273 TVHIKENTP-----------EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSG--- 338 (1041)
T ss_pred EEEEecCCC-----------cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCC---
Confidence 997653311 112447789999999999999999999999999999999999999999999999765
Q ss_pred CCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcc-cHHH
Q 001617 314 GVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPM-STEM 392 (1044)
Q Consensus 314 ~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~-~~ei 392 (1044)
|||||+|||||||||||||.++|+|| |||||+..+++||++||.||.||++|+|||.+|+--+ +..+
T Consensus 339 --HIPYRESKLTRLLQDSLGGkTKT~iI----------ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~ll 406 (1041)
T KOG0243|consen 339 --HIPYRESKLTRLLQDSLGGKTKTCII----------ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLL 406 (1041)
T ss_pred --CCCchHHHHHHHHHHHhCCCceeEEE----------EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999997654 4578
Q ss_pred HHHHHHHHHHHHHHH
Q 001617 393 LKMRQQLEFLQAELC 407 (1044)
Q Consensus 393 ~kLr~qi~~L~~eL~ 407 (1044)
+.|-.+|+.|+..|.
T Consensus 407 Kd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLA 421 (1041)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999999993
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-90 Score=802.08 Aligned_cols=364 Identities=41% Similarity=0.643 Sum_probs=328.2
Q ss_pred CCceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec-----CceeEeceecCCCC------CChHHHHHHhhHhHHHH
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-----THSFTFDHVYGSTG------SPSSAMFDECIAPLVDG 76 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~-----~~~F~FD~Vf~~~~------s~q~~vy~~~~~plv~~ 76 (1044)
..+|+|+|||||++.+|....+..+|.+..+..++..+ ...|+||++|++.+ .+|..||+.++.|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 45899999999999999988777666666555555433 24699999998552 34899999999999999
Q ss_pred hhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhcCC-CCC
Q 001617 77 LFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLD-PPC 154 (1044)
Q Consensus 77 ~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~-~~~ 154 (1044)
+|+|||+||||||||||||||||+| +.++.++|||||++++||.+|..... +..|.|.|||+|||||+|+|||+ |.
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999988 44668899999999999999987543 67999999999999999999998 43
Q ss_pred CCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEE
Q 001617 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1044)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~ 234 (1044)
.+++|+|||+|--|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||+
T Consensus 161 -----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIv 223 (1221)
T KOG0245|consen 161 -----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIV 223 (1221)
T ss_pred -----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEE
Confidence 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccC--CC
Q 001617 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKK--RK 312 (1044)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~--~~ 312 (1044)
+.|...... .......+|+|+|||||||||+..+|+.|.|+|||.+|||||++||.||+||++..+ .+
T Consensus 224 ftQk~~~~~----------~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ 293 (1221)
T KOG0245|consen 224 FTQKKHDQD----------TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKK 293 (1221)
T ss_pred EEeeecccc----------CCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCC
Confidence 999765432 113577899999999999999999999999999999999999999999999998653 34
Q ss_pred CCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcccHHH
Q 001617 313 EGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEM 392 (1044)
Q Consensus 313 ~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~~ei 392 (1044)
+..+||||||.||+||+++|||||+|+|| |++||++.||+|||+|||||+|||+|+|+++||.||.+..|
T Consensus 294 ks~fIPYRDSVLTWLLkEnLGGNSKTaMI----------AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLI 363 (1221)
T KOG0245|consen 294 KSDFIPYRDSVLTWLLKENLGGNSKTAMI----------AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLI 363 (1221)
T ss_pred CCccccchHHHHHHHHHHhcCCcchhhhh----------hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHH
Confidence 56799999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 001617 393 LKMRQQLEFLQAELCARG 410 (1044)
Q Consensus 393 ~kLr~qi~~L~~eL~~~~ 410 (1044)
+.|++++..|+..|...+
T Consensus 364 RELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 364 RELREEVARLKSLLRAQG 381 (1221)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999996544
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-89 Score=788.06 Aligned_cols=357 Identities=46% Similarity=0.698 Sum_probs=328.6
Q ss_pred CCCceEEEEEeCCCCCchhccCCcceEEEeCCCCceee---------cCceeEeceecCCCCCChHHHHHHhhHhHHHHh
Q 001617 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGL 77 (1044)
Q Consensus 7 ~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~ 77 (1044)
.+++|+|+||+||+...+...++..++.+.+...++.+ .+++|+||+||+++. +|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~s-tQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDS-TQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCC-CHHHHHHHHhHHHHHHH
Confidence 45799999999999999998888888887776665554 357899999999765 59999999999999999
Q ss_pred hcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCC
Q 001617 78 FQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNK 157 (1044)
Q Consensus 78 l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 157 (1044)
++|||+||||||||||||||||.|+ ++...|||||++.+||..|+..++...|.|+|||+|||||.|+|||+|.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999997 47789999999999999999987777899999999999999999999754
Q ss_pred CCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEE
Q 001617 158 PDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 237 (1044)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q 237 (1044)
.+.|.|++++..||||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 24699999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcc
Q 001617 238 MRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHV 317 (1044)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~i 317 (1044)
..... +.......|+|+|||||||||..+|++.|.|++|+.+||+||++||+||++|+++++ +||
T Consensus 222 ~~~~~-----------~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKSD-----------GGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred ecccC-----------CCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 33211 112456789999999999999999999999999999999999999999999999876 399
Q ss_pred cCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcccHHHHHHHH
Q 001617 318 PYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQ 397 (1044)
Q Consensus 318 PyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~~ei~kLr~ 397 (1044)
||||||||+||||+|||||+|+|| |||||+..+++||++||+||+||+.|+|+|+||.|+....+..|+.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mi----------anvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ 356 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMI----------ANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQE 356 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEE----------EecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 001617 398 QLEFLQAELCAR 409 (1044)
Q Consensus 398 qi~~L~~eL~~~ 409 (1044)
+|+.|+.++...
T Consensus 357 ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 357 EIERLKKELDPG 368 (574)
T ss_pred HHHHHHHhhccc
Confidence 999999999653
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.2e-84 Score=722.13 Aligned_cols=337 Identities=44% Similarity=0.687 Sum_probs=311.8
Q ss_pred CCCCCceEEEEEeCCCCCchhccCCcceEEEeCCCCceeecC----ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcC
Q 001617 5 GGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT----HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1044)
Q Consensus 5 ~~~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~----~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G 80 (1044)
-++.|+|+|+||+||+++.|...|......+.++...|.+.. .+|.||+||.|+++ |++||..++.|+|++||.|
T Consensus 3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhcc
Confidence 347799999999999999998887766665556566666665 89999999998765 9999999999999999999
Q ss_pred CCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCC
Q 001617 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1044)
||+||||||||||||||||.|..+++...|||||++++||++|........|.|.|||||||+|+|+|||+|.
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~------- 154 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE------- 154 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc-------
Confidence 9999999999999999999998777778899999999999999998888899999999999999999999864
Q ss_pred CCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEec
Q 001617 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1044)
Q Consensus 161 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~ 240 (1044)
+.++.|++|.+.+++|.|++++.|.++++++.+|+.|..+|+++.|+||.+|||||.||+|+|.|.+.
T Consensus 155 ------------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~ 222 (607)
T KOG0240|consen 155 ------------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV 222 (607)
T ss_pred ------------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCC
Q 001617 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1044)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyR 320 (1044)
.. ...++|+|+||||||||++.++|+.|.-+.|+.+||+||.|||+||+||+++.+ +|||||
T Consensus 223 e~--------------~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYR 284 (607)
T KOG0240|consen 223 ED--------------KRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYR 284 (607)
T ss_pred cc--------------hhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcch
Confidence 32 567889999999999999999999999999999999999999999999999864 599999
Q ss_pred CCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCccc
Q 001617 321 DSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMS 389 (1044)
Q Consensus 321 dSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~ 389 (1044)
||||||||+|+|||||+|++| +|+||+..|..||.+||+|++||+.|+|.+.+|.....
T Consensus 285 DSKLTRILqdSLGGNsRTtlI----------i~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 285 DSKLTRILQDSLGGNSRTTLI----------ICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred hhHHHHHHHHHhCCCcceEEE----------EecCCccccccccccchhhccccccccchhhhhhHhhH
Confidence 999999999999999999999 89999999999999999999999999999999965433
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.1e-78 Score=726.77 Aligned_cols=356 Identities=39% Similarity=0.599 Sum_probs=306.2
Q ss_pred CCCceEEEEEeCCCCCchhccCCcceEEEeCCCCceeecCceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEE
Q 001617 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVL 86 (1044)
Q Consensus 7 ~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~ 86 (1044)
.+++|+|||||||+...|. +.. ++... .+..+.+..+.|+||+||++.++ |.+||+.++.|+|+++|+|||+|||
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~~-iV~~~-s~dsl~I~~qtFtFD~VFdp~aT-QedVFe~vv~PLV~svLdGyNaTIF 170 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GEM-IVQKM-SNDSLTINGQTFTFDSIADPEST-QEDIFQLVGAPLVENCLAGFNSSVF 170 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CCe-eEEEc-CCCeEEEeCcEEeCCeeeCCCCC-HHHHHHHHHHHHHHHHhcCCcceee
Confidence 3679999999999998863 333 33333 34467778899999999998755 8999999999999999999999999
Q ss_pred EecccCCCcccccccCCC-------CCCCcccHhHHHHHHHHHHhhh-----ccCceEEEEEehhhhhhhHHhhcCCCCC
Q 001617 87 AYGQTGSGKTYTMGTGFK-------DGYQTGIIPLVMNVLFSKIETL-----KDQTEFQLHVSFIEILKEEVRDLLDPPC 154 (1044)
Q Consensus 87 aYGqtgSGKT~Tm~g~~~-------~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1044)
|||||||||||||+|+.+ ++..+|||||++++||..|... .....|.|+|||+|||||.|||||+|.
T Consensus 171 AYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~- 249 (1320)
T PLN03188 171 AYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS- 249 (1320)
T ss_pred cCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc-
Confidence 999999999999999653 2457899999999999999753 124579999999999999999999763
Q ss_pred CCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEE
Q 001617 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1044)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~ 234 (1044)
...+.|++++.++++|.|++++.|.|++++..+|..|..+|++++|.||..|||||+||+|+
T Consensus 250 ------------------~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~ 311 (1320)
T PLN03188 250 ------------------QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311 (1320)
T ss_pred ------------------cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence 23588999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCC
Q 001617 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1044)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~ 314 (1044)
|++...... +.......|+|+|||||||||.+.+++.|.+++|+.+||+||++||+||.+|+.....++.
T Consensus 312 Ves~~k~~~----------dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~ 381 (1320)
T PLN03188 312 VESRCKSVA----------DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQ 381 (1320)
T ss_pred EEEeecccC----------CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCC
Confidence 987543211 1123456899999999999999999999999999999999999999999999976544456
Q ss_pred CcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCccc-----
Q 001617 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMS----- 389 (1044)
Q Consensus 315 ~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~----- 389 (1044)
.||||||||||+||+|+|||||+|+|| |||||+..++.||++||+||+||++|+|+|++|.....
T Consensus 382 ~HIPYRDSKLTrLLQDSLGGNSKTvMI----------a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~L 451 (1320)
T PLN03188 382 RHIPYRDSRLTFLLQESLGGNAKLAMV----------CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFL 451 (1320)
T ss_pred CcCCCCcchHHHHHHHhcCCCceEEEE----------EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHH
Confidence 799999999999999999999999999 89999999999999999999999999999999976422
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 001617 390 -TEMLKMRQQLEFLQAEL 406 (1044)
Q Consensus 390 -~ei~kLr~qi~~L~~eL 406 (1044)
+.|.+|+.+|..|+...
T Consensus 452 relIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 452 REVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 24445555555554443
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-79 Score=694.16 Aligned_cols=361 Identities=43% Similarity=0.638 Sum_probs=322.0
Q ss_pred CCceEEEEEeCCCCCchhccCCcceEEEeCCCCcee-----------ecCceeEeceecCCCC------CChHHHHHHhh
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQ-----------IGTHSFTFDHVYGSTG------SPSSAMFDECI 70 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~-----------~~~~~F~FD~Vf~~~~------s~q~~vy~~~~ 70 (1044)
+.+|+|+|||||++.+|..-...+.|.+..+...+. -++++|.||+.|.+.+ +.|+.||+...
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 568999999999999998766665555554433322 2468999999999763 34799999999
Q ss_pred HhHHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDL 149 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DL 149 (1044)
..+|+++|+|||+||||||||||||||||.| ...++|||||++..||..|..... ...|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmG---t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMG---TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeec---cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 9999999999999999999999999999987 456799999999999999987554 568999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCcee
Q 001617 150 LDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHA 229 (1044)
Q Consensus 150 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ 229 (1044)
|+|.. .+..|.+|+++-.|++|.||++..|+|++++..++..|+++|++++|+||..|||||+
T Consensus 160 LdPk~-----------------ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKG-----------------SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCC-----------------CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 99864 2356999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhccc
Q 001617 230 IFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDK 309 (1044)
Q Consensus 230 ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~ 309 (1044)
||.|.|.|.-..... ...-...|+|.|||||||||+.++|+.|.|++||.+||+||.+||.||++|++.+
T Consensus 223 VFslvvtQ~l~D~kt----------g~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYDLKT----------GHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEecccc----------CcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999987543211 1123467999999999999999999999999999999999999999999999865
Q ss_pred CC-CCCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcc
Q 001617 310 KR-KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPM 388 (1044)
Q Consensus 310 ~~-~~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~ 388 (1044)
.. ++..+||||||.||+||+|+|||||+|+|| +||||+.+||+||++|||||.|||+|+|.++||.||.
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMi----------atvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpn 362 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMI----------ATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 362 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEE----------EEecccccchHHHHHHHHHHHHHHHhhccccccCCch
Confidence 43 245699999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 001617 389 STEMLKMRQQLEFLQAELCA 408 (1044)
Q Consensus 389 ~~ei~kLr~qi~~L~~eL~~ 408 (1044)
..-|..||++++.|+.+|..
T Consensus 363 arvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 363 ARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999965
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-78 Score=728.32 Aligned_cols=348 Identities=46% Similarity=0.697 Sum_probs=305.3
Q ss_pred CCCceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec----------CceeEeceecCCCCCChHHHHHHhhHhHHHH
Q 001617 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG----------THSFTFDHVYGSTGSPSSAMFDECIAPLVDG 76 (1044)
Q Consensus 7 ~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~----------~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~ 76 (1044)
....|.|+|||||+.+.+...+. .|.....++..+... ...|.||+||+++++ |.+||+.++.|+|++
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLS 81 (675)
T ss_pred ccceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHH
Confidence 44689999999999998543332 233222222222111 378999999998766 899999999999999
Q ss_pred hhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCC
Q 001617 77 LFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLN 156 (1044)
Q Consensus 77 ~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 156 (1044)
|+.|||+||||||||||||||||.| ...+|||||+++.+||+.|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G---~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~-- 155 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSG---SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG-- 155 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEec---cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC--
Confidence 9999999999999999999999987 45669999999999999999866 78999999999999999999998743
Q ss_pred CCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEE
Q 001617 157 KPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 236 (1044)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~ 236 (1044)
+++.|+||+.++++|.||++..|.|++++..+|..|..+|+++.|++|..|||||+||+|+|.
T Consensus 156 -----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~ 218 (675)
T KOG0242|consen 156 -----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVE 218 (675)
T ss_pred -----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEE
Confidence 349999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCc
Q 001617 237 QMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVH 316 (1044)
Q Consensus 237 q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~ 316 (1044)
+..+..+ . ..|+|+|||||||||+.+|++.|.|++||++||+||++||+||++|+++... .|
T Consensus 219 s~~~~~~--------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~---~h 280 (675)
T KOG0242|consen 219 SRGREAS--------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRP---RH 280 (675)
T ss_pred ecccccc--------------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccccc---CC
Confidence 8654321 1 6789999999999999999999999999999999999999999999998542 39
Q ss_pred ccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccCcccHH-HHHH
Q 001617 317 VPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTE-MLKM 395 (1044)
Q Consensus 317 iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d~~~~e-i~kL 395 (1044)
|||||||||||||++|||||+|+|| |||+|+..+|+||.+||+||+||++|++++.+|.-..+.. +..+
T Consensus 281 ipYRDSKLTRiLq~sLgGn~rt~~I----------~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~ 350 (675)
T KOG0242|consen 281 IPYRDSKLTRLLQDSLGGNARTAII----------ATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYL 350 (675)
T ss_pred CCccccHHHHhchhhcCCCccEEEE----------EEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999997665544 3444
Q ss_pred HHHHHHHHHHHH
Q 001617 396 RQQLEFLQAELC 407 (1044)
Q Consensus 396 r~qi~~L~~eL~ 407 (1044)
+.++..|+.++.
T Consensus 351 ~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 351 QREIAELEAELE 362 (675)
T ss_pred HHHHHHHHHHHH
Confidence 578888888884
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.8e-78 Score=681.11 Aligned_cols=326 Identities=43% Similarity=0.614 Sum_probs=289.7
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec--CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEE
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG--THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVL 86 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~--~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~ 86 (1044)
.+|+|+|||||+.+.|...+...|+.+.++...+... .+.|.||+||++.++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTN-QEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCC-HHHHHHHHHHHHHHHHhCCCceeEE
Confidence 3799999999999999876777788776655444333 479999999998755 8999999999999999999999999
Q ss_pred EecccCCCcccccccCCCC-----CCCcccHhHHHHHHHHHHhhhc----cCceEEEEEehhhhhhhHHhhcCCCCCCCC
Q 001617 87 AYGQTGSGKTYTMGTGFKD-----GYQTGIIPLVMNVLFSKIETLK----DQTEFQLHVSFIEILKEEVRDLLDPPCLNK 157 (1044)
Q Consensus 87 aYGqtgSGKT~Tm~g~~~~-----~~~~Giipr~~~~LF~~i~~~~----~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 157 (1044)
|||||||||||||+|+... ...+|||||++++||..+.... ....|.|+|||+|||||+|||||+|.
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~---- 155 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT---- 155 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC----
Confidence 9999999999999997643 2468999999999999987542 34689999999999999999999753
Q ss_pred CCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEE
Q 001617 158 PDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 237 (1044)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q 237 (1044)
...+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+
T Consensus 156 ---------------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~ 220 (337)
T cd01373 156 ---------------SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIES 220 (337)
T ss_pred ---------------CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEE
Confidence 23588999999999999999999999999999999999999999999999999999999999987
Q ss_pred EeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcc
Q 001617 238 MRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHV 317 (1044)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~i 317 (1044)
...... ......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+..... +..||
T Consensus 221 ~~~~~~------------~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~i 287 (337)
T cd01373 221 WEKKAS------------STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHV 287 (337)
T ss_pred eecCCC------------CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCcc
Confidence 654221 12456799999999999999999999999999999999999999999999875432 25699
Q ss_pred cCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 318 PYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 318 PyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
||||||||+||+|+|||||+|+|| |||||+..+++||++||+||+||+.|
T Consensus 288 pyR~SkLT~lL~dsLggns~t~~I----------~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 288 PYRDSKLTFLLRDSLGGNAKTTII----------ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCcccHHHHHHHHhcCCCceEEEE----------EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999 89999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.5e-77 Score=677.63 Aligned_cols=322 Identities=48% Similarity=0.732 Sum_probs=292.0
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCce----------------eecCceeEeceecCCCCCChHHHHHHhhHhH
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQV----------------QIGTHSFTFDHVYGSTGSPSSAMFDECIAPL 73 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v----------------~~~~~~F~FD~Vf~~~~s~q~~vy~~~~~pl 73 (1044)
+|+|+|||||+.+.|...+...|+.+.++...+ ....+.|+||+||++.++ |++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETST-QEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCC-HHHHHHHHHHHH
Confidence 589999999999999888888888776543211 112478999999998755 899999999999
Q ss_pred HHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCC
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1044)
|+++++|||+||||||||||||||||+|+ ..++|||||++++||+.++.......|.|+|||+|||||+|||||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGT---DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCC---CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 99999999999999999999999999885 367999999999999999987777899999999999999999999763
Q ss_pred CCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEE
Q 001617 154 CLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233 (1044)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti 233 (1044)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCC
Q 001617 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKE 313 (1044)
Q Consensus 234 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~ 313 (1044)
+|.+..... +.......|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999875432 113457889999999999999999999999999999999999999999999998764 3
Q ss_pred CCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 314 GVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 314 ~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
..||||||||||+||+|+|||||+|+|| +||||+..+++||++||+||+|||+|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I----------~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMI----------ANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEE----------EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 3599999999999999999999999999 89999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.1e-75 Score=663.13 Aligned_cols=326 Identities=36% Similarity=0.581 Sum_probs=287.1
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceee-----------------cCceeEeceecCCCCCChHHHHHHhhHh
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-----------------GTHSFTFDHVYGSTGSPSSAMFDECIAP 72 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~-----------------~~~~F~FD~Vf~~~~s~q~~vy~~~~~p 72 (1044)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||++.++ |++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~t-q~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTT-QKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCC-HHHHHHHHHHH
Confidence 799999999999999877777777765443 2221 2468999999998755 99999999999
Q ss_pred HHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCC
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDP 152 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1044)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|+|||+|||||+|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999998854 6799999999999999875 899999999999999999987
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEE
Q 001617 153 PCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 232 (1044)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ift 232 (1044)
.... .....++.|+++++++++|.|++++.|.|++|+..+|..|..+|.+++|.+|.+|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012457999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCC
Q 001617 233 ITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRK 312 (1044)
Q Consensus 233 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~ 312 (1044)
|+|.+.....+. . ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~~---~---~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSDG---D---VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCccc---c---cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 999986543210 0 0111356778999999999999999999999999999999999999999999999865443
Q ss_pred -CCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhh
Q 001617 313 -EGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRAR 375 (1044)
Q Consensus 313 -~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~ 375 (1044)
...||||||||||+||+|+|||||+|+|| +||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I----------~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMI----------VNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEE----------EEeCCchhhHHHHHHHHHHHHhcC
Confidence 56799999999999999999999999999 899999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6e-75 Score=663.94 Aligned_cols=337 Identities=46% Similarity=0.661 Sum_probs=298.7
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceee---------cCceeEeceecCCC------CCChHHHHHHhhHhH
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGST------GSPSSAMFDECIAPL 73 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~F~FD~Vf~~~------~s~q~~vy~~~~~pl 73 (1044)
++|+|+|||||+...|...+...++.+.+....+.. ....|+||+||++. .++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999988888777776653322222 24689999999976 144899999999999
Q ss_pred HHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhcCCC
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDP 152 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1044)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.+..... ...|.|+|||+|||+|+|||||++
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~---~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK---EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 999999999999999999999999998854 4699999999999999987654 578999999999999999999986
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEE
Q 001617 153 PCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 232 (1044)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ift 232 (1044)
.. +....+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+
T Consensus 158 ~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~ 221 (356)
T cd01365 158 KK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221 (356)
T ss_pred Cc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEE
Confidence 43 12346899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCC-
Q 001617 233 ITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKR- 311 (1044)
Q Consensus 233 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~- 311 (1044)
|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 222 l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~ 291 (356)
T cd01365 222 IVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291 (356)
T ss_pred EEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 99998654321 1135677899999999999999999999999999999999999999999999986532
Q ss_pred --CCCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccc
Q 001617 312 --KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVN 384 (1044)
Q Consensus 312 --~~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn 384 (1044)
++..||||||||||+||+++|||||+|+|| +||||+..+++||++||+||+|+++|+|.|++|
T Consensus 292 ~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I----------~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMI----------ATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred ccCCCCcCCCcCcHHHHHHHHhcCCCceEEEE----------EEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 345799999999999999999999999999 899999999999999999999999999999886
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.6e-74 Score=660.52 Aligned_cols=333 Identities=43% Similarity=0.683 Sum_probs=301.1
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceee--------cCceeEeceecCCCCCChHHHHHHhhHhHHHHhhcC
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~--------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G 80 (1044)
++|+|+|||||+.+.|...++..++.+..+..+|.+ ..+.|+||+||++.++ |++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEAD-QIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 589999999999999987788888888777666655 3578999999998755 9999999999999999999
Q ss_pred CCccEEEecccCCCcccccccCCCC--------CCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCC
Q 001617 81 YNATVLAYGQTGSGKTYTMGTGFKD--------GYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDP 152 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm~g~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1044)
||+||||||+|||||||||+|+... ...+|||||++.+||..+... ...|.|+|||+|||+|+|||||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 578999999999999999999986
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceEEec--CCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeE
Q 001617 153 PCLNKPDTANGHTGKVTVPGKPPIQIRET--SNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAI 230 (1044)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~--~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~i 230 (1044)
.. ....++.|+++ +.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12456999999 5999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccC
Q 001617 231 FTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKK 310 (1044)
Q Consensus 231 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~ 310 (1044)
|+|+|.+...... .......|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+....
T Consensus 223 ~~i~i~~~~~~~~-----------~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~ 291 (352)
T cd01364 223 FSITIHIKETTIS-----------GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSP 291 (352)
T ss_pred EEEEEEEeccCCC-----------CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 9999998653211 11335679999999999999999999999999999999999999999999997654
Q ss_pred CCCCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccccC
Q 001617 311 RKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRD 386 (1044)
Q Consensus 311 ~~~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~d 386 (1044)
|||||+|+||+||+|+|||||+|+|| +||||+..+++||++||+||+||++|+|.|.+|.+
T Consensus 292 -----~vpyR~S~LT~lL~~~Lgg~s~t~~I----------~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 292 -----HIPYRESKLTRLLQDSLGGRTKTSII----------ATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred -----CCCCcccHHHHHHHHhcCCCceEEEE----------EEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 99999999999999999999999999 89999999999999999999999999999999974
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.3e-74 Score=657.30 Aligned_cols=337 Identities=64% Similarity=0.992 Sum_probs=305.8
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec-CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEE
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLA 87 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~-~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~a 87 (1044)
++|+|+||+||+...|...++..|+.+.++++++.++ .+.|+||+||++.++ |++||+.++.|+|+++++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTS-QEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCC-HHHHHHHHHHHHHHHHhCCCccceee
Confidence 4799999999999999888889999999999998887 689999999998755 99999999999999999999999999
Q ss_pred ecccCCCcccccccCCCC---CCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCC
Q 001617 88 YGQTGSGKTYTMGTGFKD---GYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1044)
Q Consensus 88 YGqtgSGKT~Tm~g~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1044)
||+|||||||||+|+... ...+|||||++++||..++......+|.|+|||+|||||.|||||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999987542 5679999999999999999877668999999999999999999998642
Q ss_pred CCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCC
Q 001617 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPV 244 (1044)
Q Consensus 165 ~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~ 244 (1044)
...+++.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.....+.
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12456899999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCcc
Q 001617 245 SLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 324 (1044)
Q Consensus 245 ~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkL 324 (1044)
.. +..+.......|+|+||||||||+..++++.|.+++|+.+||+||++|++||.+|+...+ +..|||||+|||
T Consensus 224 ~~----~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 AP----MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred cc----ccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 10 111223567889999999999999999999999999999999999999999999998764 346999999999
Q ss_pred cccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccc
Q 001617 325 TRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQ 378 (1044)
Q Consensus 325 TrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~ 378 (1044)
|+||+|+|||||+|+|| +||||+..+++||++||+||+|||+||
T Consensus 298 T~lL~~~Lgg~s~t~~I----------~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMI----------ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEE----------EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999 899999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3e-73 Score=644.15 Aligned_cols=323 Identities=47% Similarity=0.698 Sum_probs=293.6
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec---------CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcC
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG---------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G 80 (1044)
+|+|+|||||+.+.|...++..++.+.++..+|.+. .+.|.||+||++.++ |++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNST-QEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCcc-HHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888877776665542 467999999998755 8999999999999999999
Q ss_pred CCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCC
Q 001617 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1044)
||+||||||+|||||||||+|+..+...+|||||++++||..+....+ ..|.|.|||+|||+|+|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 999999999999999999999877677899999999999999987544 7899999999999999999997632
Q ss_pred CCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEec
Q 001617 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1044)
Q Consensus 161 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~ 240 (1044)
..++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 23588999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCC
Q 001617 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1044)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyR 320 (1044)
.. ........|+|+|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.+++ .|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~----~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKS----THIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCC----CcCCCc
Confidence 32 112456789999999999999999999999999999999999999999999987643 499999
Q ss_pred CCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 321 DSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 321 dSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
+||||+||+++|||||+|+|| +||||+..+++||++||+||+|||+|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I----------~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMC----------ANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEE----------EEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999 89999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.5e-73 Score=641.35 Aligned_cols=308 Identities=42% Similarity=0.626 Sum_probs=277.8
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceee-------------cCceeEeceecCCCCCChHHHHHHhhHhHHH
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-------------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~ 75 (1044)
.+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||++.++ |++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHH
Confidence 379999999999999987666666655544 22322 1478999999998765 89999999999999
Q ss_pred HhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCC
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCL 155 (1044)
Q Consensus 76 ~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 155 (1044)
++++|||+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|++||+|||+|.|+|||++.
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~-- 151 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR-- 151 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc--
Confidence 9999999999999999999999998854 679999999999999998754 689999999999999999999752
Q ss_pred CCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEE
Q 001617 156 NKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235 (1044)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v 235 (1044)
.++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|
T Consensus 152 ------------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 213 (322)
T cd01367 152 ------------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL 213 (322)
T ss_pred ------------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCC-ChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCC
Q 001617 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTG-SDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1044)
Q Consensus 236 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~-~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~ 314 (1044)
.+... ....|+|+|||||||||...++ ..+.+++|+.+||+||++|++||.+|+.+..
T Consensus 214 ~~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~---- 272 (322)
T cd01367 214 KNKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKA---- 272 (322)
T ss_pred EEecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCC----
Confidence 87532 3467999999999999998765 5789999999999999999999999998753
Q ss_pred CcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhh
Q 001617 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRAR 375 (1044)
Q Consensus 315 ~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~ 375 (1044)
||||||||||+||+|+|||||+|+|| +||||+..+++||++||+||+|+|
T Consensus 273 -~iPyRdSkLT~lL~~~L~g~~~t~~I----------~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 -HVPFRGSKLTQVLRDSFIGNSKTVMI----------ATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred -cCCCccCHHHHHHHHhhCCCCeEEEE----------EEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999 899999999999999999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=6.2e-73 Score=640.88 Aligned_cols=320 Identities=46% Similarity=0.709 Sum_probs=293.8
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec----CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCcc
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNAT 84 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~t 84 (1044)
.+|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||++.++ |++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTT-QEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHHHcCccce
Confidence 489999999999999977777778877555 455554 579999999998755 99999999999999999999999
Q ss_pred EEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCC
Q 001617 85 VLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1044)
|||||+|||||||||+|+......+|||||++++||..+........|.|++||+|||+|.|||||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999887777789999999999999999999763
Q ss_pred CCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCC
Q 001617 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPV 244 (1044)
Q Consensus 165 ~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~ 244 (1044)
...+.+++++.++++|.|++++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-- 218 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET-- 218 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--
Confidence 2458899999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCcc
Q 001617 245 SLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 324 (1044)
Q Consensus 245 ~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkL 324 (1044)
.....|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+++ .|||||||+|
T Consensus 219 ------------~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 219 ------------GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred ------------CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 346789999999999999999999999999999999999999999999998653 4999999999
Q ss_pred cccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 325 TRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 325 TrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
|+||+|+|||||+|+|| +||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I----------~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLI----------ICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEE----------EEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999 89999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=7.5e-72 Score=629.04 Aligned_cols=308 Identities=39% Similarity=0.622 Sum_probs=278.0
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCC----ceee-------cCceeEeceecCCCCCChHHHHHHhhHhHHHHhh
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKP----QVQI-------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~----~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l 78 (1044)
+|+|+|||||+.+.| .+...|+.+.++.+ .+.+ .++.|.||+||++.++ |++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECT-QEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCC-HHHHHHHHHHHHHHHHh
Confidence 589999999999888 34566776655522 2322 2478999999998755 99999999999999999
Q ss_pred cCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCC
Q 001617 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKP 158 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 158 (1044)
+|||+||||||||||||||||+|+. ..+|||||++++||..++.. ...|.|++||+|||+|.|||||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999998854 47999999999999988764 3689999999999999999999863
Q ss_pred CCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEE
Q 001617 159 DTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 238 (1044)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~ 238 (1044)
...+.|+++++++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 148 --------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 148 --------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred --------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 235889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCccc
Q 001617 239 RKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVP 318 (1044)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iP 318 (1044)
.. .....|+|+|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 22578999999999999999999999999999999999999999999998765 3999
Q ss_pred CCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhh
Q 001617 319 YRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRAR 375 (1044)
Q Consensus 319 yRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~ 375 (1044)
||||+||+||+|+|||||+|+|| +||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i----------~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMV----------ANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEE----------EEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999 899999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.7e-71 Score=629.62 Aligned_cols=319 Identities=38% Similarity=0.578 Sum_probs=281.0
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceee---------------cCceeEeceecCCCCCChHHHHHHhhHhHH
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------------GTHSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~---------------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv 74 (1044)
+|+|+||+||+...+. .++.+.+++.++++ ....|+||+||++ + +|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~-~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-A-SQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-C-CHHHHHHHHHHHHH
Confidence 5899999999997442 23334443332211 2357999999998 4 59999999999999
Q ss_pred HHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCC
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPC 154 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1044)
+++++|||+||||||+|||||||||+|+..+..++|||||++.+||..++.. ....|.|++||+|||||+|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999997666678999999999999999874 356899999999999999999998753
Q ss_pred CCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEE
Q 001617 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1044)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~ 234 (1044)
.+ .+..+.+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 11 12346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCC
Q 001617 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1044)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~ 314 (1044)
|.+..... .......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecCC------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 99865422 1245678999999999999999999999999999999999999999999999876 2
Q ss_pred CcccCCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhh
Q 001617 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRAR 375 (1044)
Q Consensus 315 ~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~ 375 (1044)
.||||||||||+||+|+|||||+|+|| +||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I----------~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVML----------ATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEE----------EEeCCchhhHHHHHHHHHHHHhcC
Confidence 499999999999999999999999999 899999999999999999999984
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2e-71 Score=626.99 Aligned_cols=317 Identities=43% Similarity=0.689 Sum_probs=283.9
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec----CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccE
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATV 85 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti 85 (1044)
+|+|+||+||+...|. .+...++.+..+ ..+.+. ...|.||+||++.++ |++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGEST-NREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCC-HHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999999886 344445555554 444432 589999999998755 899999999999999999999999
Q ss_pred EEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCCC
Q 001617 86 LAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHT 165 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 165 (1044)
||||+|||||||||+|+ ...+|||||++++||..+.... ...|.|++||+|||||.|||||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~---~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGD---EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCC---CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 99999999999999885 4679999999999999998754 56899999999999999999998642
Q ss_pred CcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCCC
Q 001617 166 GKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVS 245 (1044)
Q Consensus 166 ~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~~ 245 (1044)
.++.|++++.+++++.|++++.|.|++++..+|..|..+|.+++|.+|.+|||||+||+|+|.+.....+
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-- 212 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-- 212 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC--
Confidence 4689999999999999999999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCccc
Q 001617 246 LGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 325 (1044)
Q Consensus 246 ~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkLT 325 (1044)
.......|+|+|||||||||....+ .+.+++|+.+||+||.+|++||.+|+.+.. ..||||||||||
T Consensus 213 ---------~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 213 ---------ESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred ---------CCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 1255778999999999999999988 899999999999999999999999998752 349999999999
Q ss_pred ccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 326 RLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 326 rlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
+||+++|||||+|+|| +||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i----------~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAII----------CTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEE----------EEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999 89999999999999999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-70 Score=655.42 Aligned_cols=326 Identities=40% Similarity=0.617 Sum_probs=287.5
Q ss_pred CCceEEEEEeCCCCCchhccCCcceEEEeCCCCceee---------cCceeEeceecCCCCCChHHHHHHhhHhHHHHhh
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l 78 (1044)
.|+|+|+|||||+.+.+....+...+ ..++...+.+ ..+.|.||+||+|.++ |++||.+ +.|+|..+|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 47999999999999998754222222 2221111211 1235999999999876 8999988 799999999
Q ss_pred cCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCC
Q 001617 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKP 158 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 158 (1044)
+|||+||||||||||||||||.|+ .+..+|||||++..||..+......+.|.+.+||+|||||.|+|||++.+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999875 56789999999999999999988899999999999999999999998642
Q ss_pred CCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEE
Q 001617 159 DTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 238 (1044)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~ 238 (1044)
....+.|++++++.++|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1235889999999999999999999999999999999999999999999999999999999999754
Q ss_pred eccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCccc
Q 001617 239 RKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVP 318 (1044)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iP 318 (1044)
+ ...+....+.|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+... .|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~-----~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKR-----SHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcC-----CCCc
Confidence 2 22366778899999999999999999999999999999999999999999999854 4999
Q ss_pred CCCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccc
Q 001617 319 YRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVN 384 (1044)
Q Consensus 319 yRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn 384 (1044)
|||||||+||+++|||+++|+|+ ++|||...++.||+++|+||.|++.+...+...
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmf----------v~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMF----------VNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred ccccchHHHhHhhhCCccceeeE----------EEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 99999999999999999999999 679999999999999999999999998877543
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.4e-69 Score=614.97 Aligned_cols=322 Identities=43% Similarity=0.650 Sum_probs=287.7
Q ss_pred CCceEEEEEeCCCCCchhccCCcceEEEeCCC-Cceeec-----CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCC
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGK-PQVQIG-----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY 81 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~v~~~-----~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~ 81 (1044)
.|+|+|+|||||+...|. .....++.+.++. ..+.+. .+.|+||+||++.+ +|++||+. +.|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDA-SQEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCC-CHHHHHHH-HHHHHHHHhCCC
Confidence 478999999999998885 2334455555553 444432 36899999999765 48999998 699999999999
Q ss_pred CccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhcCCCCCCCCCCC
Q 001617 82 NATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1044)
|+||||||+|||||||||+|+. ..+|||||++++||..+....+ ...|.|++||+|||+|+|||||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999998854 6799999999999999988755 67999999999999999999998642
Q ss_pred CCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEec
Q 001617 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1044)
Q Consensus 161 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~ 240 (1044)
..+.++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1245799999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCC
Q 001617 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1044)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyR 320 (1044)
. .+....|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+. .|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCc
Confidence 2 245678999999999999999999999999999999999999999999998874 499999
Q ss_pred CCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccc
Q 001617 321 DSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNK 380 (1044)
Q Consensus 321 dSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~k 380 (1044)
+|+||+||+++||||++|+|| +||||...+++||++||+||+|+++|+|.
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i----------~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMF----------VNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEE----------EEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999 89999999999999999999999999873
No 23
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-70 Score=603.50 Aligned_cols=326 Identities=38% Similarity=0.582 Sum_probs=288.1
Q ss_pred CCCCCCceEEEEEeCCCCCchhccCCcceEEEeCCC------Cceee------cCceeEeceecCCCCCChHHHHHHhhH
Q 001617 4 GGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGK------PQVQI------GTHSFTFDHVYGSTGSPSSAMFDECIA 71 (1044)
Q Consensus 4 ~~~~~~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~------~~v~~------~~~~F~FD~Vf~~~~s~q~~vy~~~~~ 71 (1044)
++.+...|.|+||-||++..|......++|+|...+ |...+ .++.|.||+|||..++ ++.||..++.
T Consensus 203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~ 281 (676)
T KOG0246|consen 203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAK 281 (676)
T ss_pred CCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhh
Confidence 356677999999999999999877777776653322 22222 2578999999998776 8999999999
Q ss_pred hHHHHhhcCCCccEEEecccCCCcccccccCCCCC---CCcccHhHHHHHHHHHHhhh-ccCceEEEEEehhhhhhhHHh
Q 001617 72 PLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDG---YQTGIIPLVMNVLFSKIETL-KDQTEFQLHVSFIEILKEEVR 147 (1044)
Q Consensus 72 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~---~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIy~e~v~ 147 (1044)
|||..+|+|.-+|+||||||||||||||||+|.+. ...||.-++..++|..+..- -....+.|++||||||..+||
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvf 361 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVY 361 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchh
Confidence 99999999999999999999999999999998743 34699999999999988752 124589999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCc
Q 001617 148 DLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRS 227 (1044)
Q Consensus 148 DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRS 227 (1044)
|||++ +..|.++||.+..|+|.||++..|.+.++++.+|+.|+..|++|.|..|..||||
T Consensus 362 DLL~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRS 421 (676)
T KOG0246|consen 362 DLLND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRS 421 (676)
T ss_pred hhhcc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccc
Confidence 99975 3468999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCccccc-CCChhhHHHHHHHHHhhhHHHHHHHHHhh
Q 001617 228 HAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKR-TGSDGLRFKEGVHINRGLLALGNVISALG 306 (1044)
Q Consensus 228 H~ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~-t~~~g~r~~E~~~IN~SL~~L~~vI~aL~ 306 (1044)
||||.|.+... .+..++|+|.||||||+||... +.++.++..||..||+||+||..||+||+
T Consensus 422 HAvfQIilr~~-----------------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg 484 (676)
T KOG0246|consen 422 HAVFQIILRKH-----------------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG 484 (676)
T ss_pred ceeEeeeeecC-----------------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhc
Confidence 99999999752 1346889999999999999755 45677888999999999999999999999
Q ss_pred cccCCCCCCcccCCCCcccccccccCCC-CcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccc
Q 001617 307 DDKKRKEGVHVPYRDSKLTRLLQDSLGG-NSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPI 382 (1044)
Q Consensus 307 ~~~~~~~~~~iPyRdSkLTrlLq~~Lgg-ns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~ 382 (1044)
.++. |+|||.||||.+|+|||-| ||+|+|| +||||+..+++.||||||||+|+|..-..+.
T Consensus 485 ~nk~-----H~PFR~SKLTqVLRDSFIGenSrTcMI----------A~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 485 RNKS-----HLPFRGSKLTQVLRDSFIGENSRTCMI----------ATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCCC-----CCCchhhhHHHHHHHhhcCCCCceEEE----------EEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 8875 9999999999999999988 9999999 9999999999999999999999999866543
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.6e-69 Score=611.67 Aligned_cols=327 Identities=51% Similarity=0.770 Sum_probs=297.7
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCC-ceee-------cCceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCC
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKP-QVQI-------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY 81 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~ 81 (1044)
+|+|+|||||+...|...+...++.+.++.+ .+.+ ..+.|+||+||++.+ +|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATA-SQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCC-ChHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888888876654 3433 247899999999765 489999999999999999999
Q ss_pred CccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCC
Q 001617 82 NATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTA 161 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 161 (1044)
|+||||||+|||||||||+|+ ..++||||+++++||..+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999884 456899999999999999887667899999999999999999999763
Q ss_pred CCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEecc
Q 001617 162 NGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 241 (1044)
Q Consensus 162 ~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~ 241 (1044)
+.++.|++++++++++.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 346899999999999999999999999999999999999999999999999999999999999976321
Q ss_pred CCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCC
Q 001617 242 SPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRD 321 (1044)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRd 321 (1044)
........|+|+||||||+|+....++.|.+++|+..||+||.+|++||.+|+.+.+ ..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~---~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQK---SRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCC---CCCCCCcC
Confidence 123567899999999999999999999999999999999999999999999998532 45999999
Q ss_pred CcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccc
Q 001617 322 SKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVN 384 (1044)
Q Consensus 322 SkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn 384 (1044)
|+||+||+++|||+++|+|| +||||+..+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i----------~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMI----------ANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEE----------EEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999 899999999999999999999999999999875
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-67 Score=596.25 Aligned_cols=332 Identities=36% Similarity=0.575 Sum_probs=289.8
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceee---------------cCceeEeceecCCCCCChHHHHHHhhHhHH
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------------GTHSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~---------------~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv 74 (1044)
+|.|+||+||+.+. .+...|+.|......+-. ..+.|+|.+||+|.++ |.+||+.|+.|+|
T Consensus 32 ~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~plV 107 (809)
T KOG0247|consen 32 PVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPLV 107 (809)
T ss_pred chheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHHH
Confidence 79999999999862 234456665544433221 1257999999998765 8999999999999
Q ss_pred HHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhh-----------------------------
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIET----------------------------- 125 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~----------------------------- 125 (1044)
.+++.|.|..+|+||.|||||||||+|+ +..+||+||+++.||+.|..
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~---~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGT---PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecC---CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999884 55689999999999999841
Q ss_pred -----------------------------------hccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCCCCcccC
Q 001617 126 -----------------------------------LKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTV 170 (1044)
Q Consensus 126 -----------------------------------~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~ 170 (1044)
+..+..|.|+|||+||||+-|||||.+.+..+.
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~------------ 252 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK------------ 252 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch------------
Confidence 012346899999999999999999987642211
Q ss_pred CCCC-CceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCCCCCCC
Q 001617 171 PGKP-PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDS 249 (1044)
Q Consensus 171 ~~~~-~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~~~~~~ 249 (1044)
+. ...+++|.+|.++|.|+++|.|+|.+|++.+|..|.++|++++|..|..|||||+||+|.|.+....
T Consensus 253 --~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~-------- 322 (809)
T KOG0247|consen 253 --LQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS-------- 322 (809)
T ss_pred --hhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc--------
Confidence 11 2558999999999999999999999999999999999999999999999999999999999985442
Q ss_pred CCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCccccccc
Q 001617 250 SPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQ 329 (1044)
Q Consensus 250 ~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkLTrlLq 329 (1044)
.......+|.|.|||||||||..+|.+.|.|++|+.+||.||++||+||.+|..+++.+...+|||||||||++++
T Consensus 323 ----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq 398 (809)
T KOG0247|consen 323 ----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFK 398 (809)
T ss_pred ----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHH
Confidence 1235678899999999999999999999999999999999999999999999998888778899999999999999
Q ss_pred ccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhccccccccc
Q 001617 330 DSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVN 384 (1044)
Q Consensus 330 ~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn 384 (1044)
.+|.|..+.+|| +||+|.+.+|+|+++.|+||.-+..|.+.+.++
T Consensus 399 ~~f~G~gki~MI----------V~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 399 NYFDGKGKIRMI----------VCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HhcCCCCcEEEE----------EecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 999999999999 899999999999999999999999999877664
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-67 Score=599.63 Aligned_cols=322 Identities=48% Similarity=0.733 Sum_probs=279.9
Q ss_pred EeCCCCCchhccCCcceEEEeCC---------CCceeecCceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEE
Q 001617 16 HVRPLIGDERAQGCKDCVAVVPG---------KPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVL 86 (1044)
Q Consensus 16 RvRP~~~~E~~~~~~~~v~~~~~---------~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~ 86 (1044)
||||++..|...+...++.+... ..........|.||+||++.++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDAT-QEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTST-HHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999988887777665421 1112223578999999997755 9999999999999999999999999
Q ss_pred EecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccC--ceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCC
Q 001617 87 AYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQ--TEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1044)
Q Consensus 87 aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1044)
|||+|||||||||+|+ .....+|||||++++||..+...... ..|.|+|||+|||+|.|||||+|..
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 148 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN---------- 148 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS----------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc----------
Confidence 9999999999999886 34677999999999999999986654 6899999999999999999998753
Q ss_pred CCcccCCCCCCceEEecCCCc-EEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCC
Q 001617 165 TGKVTVPGKPPIQIRETSNGV-ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSP 243 (1044)
Q Consensus 165 ~~~~~~~~~~~l~ire~~~~~-~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~ 243 (1044)
.+...++.|++++..+ ++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 149 -----~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 149 -----SKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp -----SSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred -----cccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 0123469999999865 9999999999999999999999999999999999999999999999999999765431
Q ss_pred CCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCC-hhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCC
Q 001617 244 VSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDS 322 (1044)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~-~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdS 322 (1044)
. .......|+|+||||||||+..++++ .+.+++|+..||+||.+|++||.+|+.. ....|||||+|
T Consensus 224 ~----------~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 D----------DEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp T----------EEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred c----------cccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 0 00136889999999999999998886 5889999999999999999999999988 22459999999
Q ss_pred cccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcc
Q 001617 323 KLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 323 kLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i 377 (1044)
|||+||+|+|||||+|+|| +||||+..++++|++||+||+++|+|
T Consensus 291 kLT~lL~d~l~g~s~t~~I----------~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILI----------VCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEE----------EEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeE----------EEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999 89999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.2e-66 Score=588.42 Aligned_cols=318 Identities=48% Similarity=0.757 Sum_probs=284.2
Q ss_pred ceEEEEEeCCCCCchhccCCcceEEEeCCCCceeec---------CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcC
Q 001617 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG---------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G 80 (1044)
+|+|+|||||+...| ..+...++.+.++. .|.+. .+.|.||+||++.++ |++||+.++.|+|++++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNST-QEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 599999999999877 34556677666643 34332 478999999998755 8999999999999999999
Q ss_pred CCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhcCCCCCCCCCC
Q 001617 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPCLNKPD 159 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 159 (1044)
+|+||||||+|||||||||+|+ ...+||||+++++||..+..... ...|.|++||+|||+|+|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGS---PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCC---CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 9999999999999999999885 46799999999999999987543 56899999999999999999998642
Q ss_pred CCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEe
Q 001617 160 TANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 239 (1044)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~ 239 (1044)
...++.|++++.+++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 24578999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccC
Q 001617 240 KLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPY 319 (1044)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPy 319 (1044)
.... ......|+|+||||||||+..+++..+.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 4321 1147789999999999999999999999999999999999999999999998762 349999
Q ss_pred CCCcccccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhh
Q 001617 320 RDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRAR 375 (1044)
Q Consensus 320 RdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~ 375 (1044)
|+||||+||+|+|||+++|+|| +||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I----------~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMI----------ANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEE----------EEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999 899999999999999999999985
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-60 Score=561.99 Aligned_cols=320 Identities=49% Similarity=0.733 Sum_probs=280.4
Q ss_pred CceEEEEEeCCCCCchhccCCcceEEEeCCCCceee--c-CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccE
Q 001617 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--G-THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATV 85 (1044)
Q Consensus 9 ~~v~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~--~-~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti 85 (1044)
..++|+++..|-...+. +........+.. . ...|.||+||+|.++ |++||+.++.|+++.++.||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 22 SDIKSTIRIIPGELGER-------LINTSKKSHVSLEKSKEGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred cCceEEEeecCCCcchh-------eeecccccccccccccceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceE
Confidence 36777888877554431 111111111111 1 346999999998765 999999999999999999999999
Q ss_pred EEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhHHhhcCCCCCCCCCCCCCCCC
Q 001617 86 LAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHT 165 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 165 (1044)
||||||||||||||.|. ...+||||+++..||+.++.......|.|.+||+|||||+++|||.|..
T Consensus 94 fayGqTgsgKtyt~~G~---~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~----------- 159 (568)
T COG5059 94 FAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNE----------- 159 (568)
T ss_pred EEEcccCCCceeEeecC---ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcc-----------
Confidence 99999999999999874 4679999999999999999887777899999999999999999998753
Q ss_pred CcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCCC
Q 001617 166 GKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVS 245 (1044)
Q Consensus 166 ~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~~ 245 (1044)
..+.++++..++++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|++.+......
T Consensus 160 --------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~-- 229 (568)
T COG5059 160 --------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG-- 229 (568)
T ss_pred --------ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--
Confidence 1156899999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhhcccCCCCCCcccCCCCccc
Q 001617 246 LGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 325 (1044)
Q Consensus 246 ~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkLT 325 (1044)
....++|+||||||||++..++..+.|++||..||+||++||+||.+|.+.+ +..|||||+||||
T Consensus 230 ------------~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLT 294 (568)
T COG5059 230 ------------TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLT 294 (568)
T ss_pred ------------ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHH
Confidence 2223789999999999999999999999999999999999999999999752 3469999999999
Q ss_pred ccccccCCCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcccccccccc
Q 001617 326 RLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNR 385 (1044)
Q Consensus 326 rlLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~kp~vn~ 385 (1044)
|+|+++|||+++|+|| |||+|+..++++|.+||+||+||++|+|++.+|.
T Consensus 295 RlLq~sLgG~~~~~~i----------~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 295 RLLQDSLGGNCNTRVI----------CTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHhcCCCccEEEE----------EEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999 9999999999999999999999999999999996
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.2e-47 Score=396.21 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=164.3
Q ss_pred HHHHhhHhHHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhh
Q 001617 65 MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKE 144 (1044)
Q Consensus 65 vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e 144 (1044)
||+.++ |+|+.+++|||+||||||+|||||||||+|+ ..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~---~~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGK---REGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCC---CCCCCcchHHHHH--------------------------
Confidence 999999 9999999999999999999999999999885 3678999999987
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCC
Q 001617 145 EVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224 (1044)
Q Consensus 145 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~S 224 (1044)
+..+|..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788899999999999999999
Q ss_pred CCceeEEEEEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHH
Q 001617 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISA 304 (1044)
Q Consensus 225 SRSH~ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~a 304 (1044)
||||+||+|+|.+...... .......|+|+||||||||+...++..+.+++|+..||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALAS-----------ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCCC-----------CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999998764321 12456789999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCcccCCCCcccccccccCCCCcceEEEeccccccccccccCC
Q 001617 305 LGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISP 356 (1044)
Q Consensus 305 L~~~~~~~~~~~iPyRdSkLTrlLq~~Lggns~t~~I~~~~~~~~~~~~vsp 356 (1044)
|+.... ||||||||||+||+|+|||||+|+|| +||||
T Consensus 150 l~~~~~-----~vpyr~SkLT~lL~~~L~g~~~t~~i----------~~vsP 186 (186)
T cd01363 150 LAERDS-----HVPYRESKLTRLLQDSLGGNSRTLMV----------ACISP 186 (186)
T ss_pred HhcCCC-----CCCCcccHHHHHHHHhcCCCCeEEEE----------EEeCc
Confidence 987654 99999999999999999999999999 89998
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.92 E-value=7.9e-21 Score=244.58 Aligned_cols=487 Identities=18% Similarity=0.210 Sum_probs=376.0
Q ss_pred ccccccccCcccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 001617 378 QNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQ 457 (1044)
Q Consensus 378 ~~kp~vn~d~~~~ei~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~ 457 (1044)
+.+|.+.......++.++..++..++.++.. .......++.....+..+...|..++....+.++..++.+..+.
T Consensus 826 kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~-----~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~ 900 (1930)
T KOG0161|consen 826 KVKPLLKVTKTEEEMRAKEEEIQKLKEELQK-----SESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR 900 (1930)
T ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888889999999999999999966 45566778888889999999999999888888887766655322
Q ss_pred cCCCCcccHHHHHHHhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 001617 458 DGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTA 537 (1044)
Q Consensus 458 ~~~~l~~k~~eLe~~L~~~~~~~~~~~e~~~~~~~e~~e~~~e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~ 537 (1044)
.....++..+..+... ..++......+.....++.+++.+|..++++.|..+.++.
T Consensus 901 ------~~k~~le~~l~~~~~~-------------~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~----- 956 (1930)
T KOG0161|consen 901 ------AEKQELEKELKELKER-------------LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLE----- 956 (1930)
T ss_pred ------HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3334444444432221 0012233344444556677899999999999999888855
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001617 538 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKS 617 (1044)
Q Consensus 538 ~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~ 617 (1044)
..++..+.+|+.|+.++..+++...+|.++.+.+ ++++.+|..+ |...+++.+++.+.+.++
T Consensus 957 ~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l---------------Ee~~~~l~~~---l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 957 LEKNAAENKLKNLEEEINSLDENISKLSKEKKEL---------------EERIRELQDD---LQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999888888777766 5556666555 888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHH
Q 001617 618 DEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRK 691 (1044)
Q Consensus 618 Ee~~~~Le~ei~~~K~~k~~l~---rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~---~vlkrk 691 (1044)
+..+..++..++..++.+.++. +++..++..++++...+...+..|..++.+.+.++.+++.+.+... +.++++
T Consensus 1019 e~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~ 1098 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQ 1098 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999777766 559999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 692 TEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVN-VHEVRFDYEKQSQVRAALAEELA 770 (1044)
Q Consensus 692 ~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~-l~e~~~~~~~~~e~r~kl~~El~ 770 (1044)
++++.+.++.|.++++.++ ..+++.++.++++.++++.+.. ++++.+.+..+.+.+.+...|+.
T Consensus 1099 i~eL~~~i~el~e~le~er---------------~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~ 1163 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAER---------------ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQ 1163 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7788999999999999999995 99999999999999999999999
Q ss_pred HHHhhhHhhhcCCCCcCccccchhhccCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh---------------
Q 001617 771 VLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERD--------------- 835 (1044)
Q Consensus 771 ~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~--------------- 835 (1044)
.|++.++................+.+.+ ..+..|++++......+.++...++....++..+.
T Consensus 1164 ~l~~~leee~~~~e~~~~~lr~~~~~~~--~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k 1241 (1930)
T KOG0161|consen 1164 KLRRDLEEETLDHEAQIEELRKKHADSL--AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDK 1241 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 9998665544433322222222233322 33345555555444444444444443333332110
Q ss_pred -------------hhh---------cccchh----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 836 -------------RLF---------TNRGRW----NQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELV 889 (1044)
Q Consensus 836 -------------~~~---------~~~~~~----~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~ 889 (1044)
... .....| .-.++++++...+..+.+.......++.++..++.+..+....+.
T Consensus 1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~ 1321 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALE 1321 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000111 224677777777777777777777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001617 890 GLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNS 928 (1044)
Q Consensus 890 ~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~ 928 (1044)
..+++++.+...|.+++++.++..+.|.+..+.+++++.
T Consensus 1322 ~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~ 1360 (1930)
T KOG0161|consen 1322 NALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELA 1360 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877654
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=5.3e-17 Score=209.68 Aligned_cols=412 Identities=21% Similarity=0.256 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC--------CCCcccHHHHHHHhhhhhccccccccc
Q 001617 415 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG--------SPCPLKSDGLKRSLNSIEQTDYQMGEN 486 (1044)
Q Consensus 415 ~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~--------~~l~~k~~eLe~~L~~~~~~~~~~~e~ 486 (1044)
...++.|++.+..+++.+.+|.++.+.+.+++.++...+....+. .+++..+++++..++..+..+.+++..
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~ 1042 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA 1042 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888999999888888888887777665544 467778888888887776666544433
Q ss_pred CCCCChhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 487 ITGDSREIDEVAKEWEHTLLQN---SMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKER 561 (1044)
Q Consensus 487 ~~~~~~e~~e~~~e~e~~~~q~---~l~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eLe~ei~~l~~e~ 561 (1044)
.+... .++...+. .+.....+|+.++..++.++..+... +...+..++++.|++|+.+|.++.+++
T Consensus 1043 ~rkle---------~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1043 KRKLE---------GELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHH---------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 22222222 25567888999999999999998764 788899999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001617 562 DHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILD----------LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFI 631 (1044)
Q Consensus 562 ~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~----------L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~ 631 (1044)
+. ++.++.++++.+.++...+.+|..++.+ +.++++. ++.++++.+++....++..+..+
T Consensus 1114 e~--------er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~--e~~~l~~~leee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1114 EA--------ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA--EVQKLRRDLEEETLDHEAQIEEL 1183 (1930)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHH
Confidence 98 6667888899999999999999999883 3344555 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 632 KAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKS 711 (1044)
Q Consensus 632 K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~ 711 (1044)
++.+.+-...+.+++++.++.++.++++...|+.+...+..++..+..
T Consensus 1184 r~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~-------------------------------- 1231 (1930)
T KOG0161|consen 1184 RKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSS-------------------------------- 1231 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------------
Confidence 999999999999999999999999999999999888888888777765
Q ss_pred hhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCcCcccc
Q 001617 712 SARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNG 791 (1044)
Q Consensus 712 ~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~~~~~~~ 791 (1044)
.....+...+....+..|...++.+..+....+.....++..|+..|
T Consensus 1232 --------------~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l------------------- 1278 (1930)
T KOG0161|consen 1232 --------------EKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEEL------------------- 1278 (1930)
T ss_pred --------------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------------------
Confidence 22333344455555666666677777777777777888888887777
Q ss_pred chhhccCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh--hhcccchhhhhccHHHHHHHHHHHHHHHHHHHH
Q 001617 792 FARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDR--LFTNRGRWNQLRSMADAKNLLQYMFNSLADARC 869 (1044)
Q Consensus 792 ~~~~~~l~~~~~~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~--~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ 869 (1044)
..++++.+..+..+.+.+..|.+++.++..... +....++-+.++++..++..|+...++..+.+.
T Consensus 1279 ------------~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1279 ------------SRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred ------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777777777744322 344566778899999999999999988777777
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 870 ----QLWEKDIEIKEMKEQLKELVGL-LRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 870 ----ql~e~~~~l~e~k~~~~el~~~-l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
++.+...++.+|+.++++.... ++.+++.++.+...+.++++++..+.....+
T Consensus 1347 ~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1347 ELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7788999999999999976654 7889999999888888888877666655544
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.42 E-value=2.1e-14 Score=180.52 Aligned_cols=325 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 001617 511 DKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 588 (1044)
Q Consensus 511 ~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~ 588 (1044)
.....+|+..|..++.++..+... +..+.+..++++|++|+..|.+|+++++. ++..+.++.+.+.++..
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~--------Er~~R~kaek~r~dL~~ 74 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELES--------ERQARAKAEKQRRDLSE 74 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 445678889999999999988764 67889999999999999999999999999 88899999999999999
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQIL----------DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREK 658 (1044)
Q Consensus 589 kl~eLe~ql~----------~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~ek 658 (1044)
+|.+|..++. +++++++. .|.++++.+++....++..|..+++++.+.+..|.++++..+..+..++|
T Consensus 75 ELe~l~~~Lee~~~~t~aq~E~~kkrE~--El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK 152 (859)
T PF01576_consen 75 ELEELKERLEEAGGATQAQIELNKKREA--ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEK 152 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhCcHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 66777776 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHH
Q 001617 659 ELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWL 738 (1044)
Q Consensus 659 e~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l 738 (1044)
+...|..+...+..++..++. .....++..+...
T Consensus 153 ~k~~l~~e~~dL~~~l~~~~k----------------------------------------------~k~~~Ek~~K~lE 186 (859)
T PF01576_consen 153 EKSQLEAELDDLQAQLDSLQK----------------------------------------------AKQEAEKKRKQLE 186 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHH----------------------------------------------HHHHHHhHHhhHH
Confidence 999999999888888887776 3444455566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCcCccccchhhccCChHHHHHHHHHHHHHHHhhh
Q 001617 739 DHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISS 818 (1044)
Q Consensus 739 ~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~eLe~~~~~~~ 818 (1044)
.+..+...++++..+.+..+.....++..|+..|. .++++++..+..+.
T Consensus 187 ~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~-------------------------------~qLee~e~~~~~l~ 235 (859)
T PF01576_consen 187 AQLNELQAKLEESERQRNELTEQKAKLQSENSELT-------------------------------RQLEEAESQLSQLQ 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHH
Confidence 77777777899999999999999999999998883 45555666666666
Q ss_pred hhHHHHHHHHHHHHHhhh--hhcccchhhhhccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHH
Q 001617 819 NSLVAMASQLSEAEERDR--LFTNRGRWNQLRSMADAKNLLQYMFNSLADARC----QLWEKDIEIKEMKEQLKE-LVGL 891 (1044)
Q Consensus 819 ~~~~~l~~~l~e~e~~~~--~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~----ql~e~~~~l~e~k~~~~e-l~~~ 891 (1044)
+.+..|.+++.++..... .....++-..++++......|...++.....+. ++...+.+|.+|+.+++. ...+
T Consensus 236 r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~ 315 (859)
T PF01576_consen 236 REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR 315 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 666667777776643322 233456667889999888888888876555544 567789999999999995 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 892 LRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 892 l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
...++..++.|.+.+.+.++++..+.....+
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888777777777666665555544
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=99.04 E-value=6.3e-05 Score=97.51 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.9
Q ss_pred EEecccCCCccccc
Q 001617 86 LAYGQTGSGKTYTM 99 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm 99 (1044)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=99.04 E-value=9.2e-05 Score=96.03 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001617 870 QLWEKDIEIKEMKE-----QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNL 925 (1044)
Q Consensus 870 ql~e~~~~l~e~k~-----~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~ 925 (1044)
++.++..++.++.. ..+.+...+..++.....+...+...+..+..+.........
T Consensus 628 ~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 628 RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555432 233333445555555555666666667777777777766433
No 35
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.00 E-value=6.1e-11 Score=149.60 Aligned_cols=241 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHH
Q 001617 656 REKELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 732 (1044)
Q Consensus 656 ~eke~~qLk~e~~k~e~el~~Lq~~~e~q~---~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~ 732 (1044)
+++.+..|...+.+++.++..+...++.+. +.+++++.|+.+.+..|.++|++++ ..+.+++
T Consensus 2 ~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er---------------~~R~kae 66 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESER---------------QARAKAE 66 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 456778899999999999999999888876 5599999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCcCccccchhhccCChHHHHHHHHHHH
Q 001617 733 SFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLE 811 (1044)
Q Consensus 733 ~~r~~l~~ElE~~~-~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~eLe 811 (1044)
+.+++|..|++.+. .+.++.+.+..+++.+.++..||..|+++++.....+......+.+++.+.+ ..++.+|+.++
T Consensus 67 k~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~--~eL~eqle~lq 144 (859)
T PF01576_consen 67 KQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAV--AELNEQLEQLQ 144 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHH
Confidence 99999999999999 5999999999999999999999999999877655544444434434444444 34478999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 812 NMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGL 891 (1044)
Q Consensus 812 ~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~ 891 (1044)
+.+..+++....|...+.++.. .+.++..++.......+.+.. ++.+++..+.+..+.+.++...
T Consensus 145 k~k~~lEK~k~~l~~e~~dL~~------------~l~~~~k~k~~~Ek~~K~lE~---qL~El~~klee~er~~~el~~~ 209 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAELDDLQA------------QLDSLQKAKQEAEKKRKQLEA---QLNELQAKLEESERQRNELTEQ 209 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888877 467778888888877776666 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 001617 892 LRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNS 928 (1044)
Q Consensus 892 l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~ 928 (1044)
...+..+..+|.+++++.+..++.|.+...++.+++.
T Consensus 210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLe 246 (859)
T PF01576_consen 210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLE 246 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888766654
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.99 E-value=0.00024 Score=92.79 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 536 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQ 615 (1044)
Q Consensus 536 ~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~ 615 (1044)
+...+..++.+|..+..++.+++.++-.|..++..+. +...-.....+.++..+..++..++ .....+.+...
T Consensus 949 lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~----~e~~~~~k~~e~~~~~~~~e~~sl~---ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 949 LDETRLELEAKIESLHKKITSLEEELSELEKEIENLR----EELELSTKGKEDKLLDLSREISSLQ---NELKSLLKAAS 1021 (1822)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccchhhhHHHHHHHhHHHH---HHHHHHHHHHH
Confidence 3445567778888888888888887777777777662 1111111122333444444433222 22222333333
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHH
Q 001617 616 KSDEAAKRLQDEIQFI----KAQKVQLQ------HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE-------RHKLQ 678 (1044)
Q Consensus 616 k~Ee~~~~Le~ei~~~----K~~k~~l~------rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~e-------l~~Lq 678 (1044)
.....+..+...+..+ +..+.+-. ......+-.+++.-....-++..|++........ ...-+
T Consensus 1022 ~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~ 1101 (1822)
T KOG4674|consen 1022 QANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKE 1101 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHH
Confidence 3333333333333322 22111111 1222333333333444444444444444444444 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001617 679 ALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVN-VHEVRFDYEK 757 (1044)
Q Consensus 679 ~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~-l~e~~~~~~~ 757 (1044)
..++++...+..++..+...++-|-..++..-+.......+..+. + ..---.+-+.+.+|.+++.. +.=+......
T Consensus 1102 ~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~--g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1102 DALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLL--G-LSDLQNIVSFLRKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc--c-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 467777788888889998888888888886543322111101111 1 11123455677778877763 5555555566
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001617 758 QSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 758 ~~e~r~kl~~El~~L~~ 774 (1044)
+...-+.+...++.|..
T Consensus 1179 L~qq~~~~~k~i~dL~~ 1195 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQR 1195 (1822)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666654
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=98.95 E-value=0.00045 Score=89.73 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=12.0
Q ss_pred EEecccCCCccccc
Q 001617 86 LAYGQTGSGKTYTM 99 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm 99 (1044)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 37899999999876
No 38
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=0.0011 Score=89.29 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.9
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
+++-+|++|||||..+
T Consensus 30 ~~~I~G~NGaGKTTil 45 (1311)
T TIGR00606 30 LTILVGPNGAGKTTII 45 (1311)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467799999999765
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=98.87 E-value=0.00094 Score=86.78 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001617 649 FRQWKASREKELLQLRKEGRRNEYERHK 676 (1044)
Q Consensus 649 ~r~~k~~~eke~~qLk~e~~k~e~el~~ 676 (1044)
+......+++++..|+.+....+.++..
T Consensus 457 ~~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.81 E-value=0.0007 Score=79.66 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 868 RCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 868 r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
+.+|.+...+|.|++..+.-+....+++..++++|.+-..-.++.+..+....-+
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~ 463 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWK 463 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4577777777777777777666666677788888888888888887777555443
No 41
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.76 E-value=0.0024 Score=83.81 Aligned_cols=139 Identities=15% Similarity=0.165 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 001617 536 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK----KKQENQVQLL 611 (1044)
Q Consensus 536 ~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~----~k~e~~~~l~ 611 (1044)
..+.+..++.+|.+|+..+..+......- ....+.+..++...+......+.++. ........+.
T Consensus 796 ~~~~k~~~e~~i~eL~~el~~lk~klq~~-----------~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~ 864 (1822)
T KOG4674|consen 796 EMATKDKCESRIKELERELQKLKKKLQEK-----------SSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVS 864 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777776666665554442 23334444444444555555544333 3334444555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001617 612 KQKQKSDEAAKRLQDEIQFIKAQKVQLQHR-IKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK 685 (1044)
Q Consensus 612 k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rk-l~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~ 685 (1044)
+...+++..+..|+..|..++.+...+.-+ ...+....-.......-++..|+.++.....++...+..+....
T Consensus 865 ~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e 939 (1822)
T KOG4674|consen 865 TNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLE 939 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888888888777766642 12222221111222222344445555555555555555444443
No 42
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=0.0068 Score=81.35 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.6
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
++.-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4457899999999988
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.66 E-value=0.0037 Score=76.48 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----------hhhHHHHH--HHHHHHH--HHHHHHH--
Q 001617 535 DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSD----------GQTQKLQD--VHAHKLK--SLEAQIL-- 598 (1044)
Q Consensus 535 e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~----------~~~~kl~~--~~e~kl~--eLe~ql~-- 598 (1044)
++...+.....++.+|..++..|+.....|...+..+...+. .....|.. -|...|+ .+-..+.
T Consensus 312 dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleel 391 (1195)
T KOG4643|consen 312 DMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEEL 391 (1195)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Confidence 344445556677888888877777777666544443321110 01111111 0110000 1111111
Q ss_pred ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 001617 599 ---DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREK 658 (1044)
Q Consensus 599 ---~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~---rkl~~e~~~~r~~k~~~ek 658 (1044)
++-..-.++..+.+.+++++-++..|+..|.++.++++++. +.+..|.+++.+......+
T Consensus 392 qsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 392 QSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777788899999999999999999999887 6666666666555444433
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.65 E-value=0.0075 Score=80.36 Aligned_cols=102 Identities=20% Similarity=0.316 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQ 884 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~ 884 (1044)
..|..+++++..+.+.+.........+..=.. -....|.++..+.+.+..+......+.. ++.+++.++......
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~~~ 845 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYED--WLQEEWDKVDELREEKPELEEQLRDLEQ---ELQELEQELNQLQKE 845 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhhhhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45666666666665555544443333322110 1145677777777777766665554443 444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 885 LKELVGLLRQSEVRRKEVEEELKLREQAVA 914 (1044)
Q Consensus 885 ~~el~~~l~~~e~e~~~l~~~l~~~e~~~~ 914 (1044)
+. ....+++..++.+..++...+..+.
T Consensus 846 ~~---~~~~~le~~~~~~~~~~~~~~~~l~ 872 (1201)
T PF12128_consen 846 VK---QRRKELEEELKALEEQLEQLEEQLR 872 (1201)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3344444444444444444444443
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=0.011 Score=79.62 Aligned_cols=106 Identities=20% Similarity=0.334 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 587 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e 587 (1044)
..+..++.++..+|+.++.++...... ..+.+++.++..++.+++.+..++..+ . .-...+.
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~----------~s~~ele~ei~~~~~el~~l~~~~e~l----~----~e~e~~~ 856 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD----------RTVQQVNQEKQEKQHELDTVVSKIELN----R----KLIQDQQ 856 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHH
Confidence 445667777777887777766654321 133444444444444444443333333 1 1111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001617 588 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFI 631 (1044)
Q Consensus 588 ~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~ 631 (1044)
.++..|+..+.+++........-...+..++..+..|..++..+
T Consensus 857 ~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 857 EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444444443333334444444444444444333
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.52 E-value=0.018 Score=77.23 Aligned_cols=55 Identities=22% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 867 ARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSA 921 (1044)
Q Consensus 867 ~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~ 921 (1044)
.+.++..+..++..++..+..+...+..++.+...+.+++...+..+..+.....
T Consensus 801 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~ 855 (1179)
T TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555554455555555555555555555555555544433
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.51 E-value=0.0084 Score=75.16 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 861 FNSLADARCQLWEKDIEIKEMKEQLKELVGLL 892 (1044)
Q Consensus 861 ~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l 892 (1044)
...+..+|+.+......+.-+..-.+.+....
T Consensus 906 ~~~~g~hRqe~~~k~~t~ac~~e~~~~l~q~~ 937 (1317)
T KOG0612|consen 906 KDVLGLHRQELTCKDCTLACLEETNRTLTQKC 937 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Confidence 34555566666666555555555555554433
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.50 E-value=0.02 Score=76.50 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 686 LVLQRKTEEAAMATKRLKELLESRKS 711 (1044)
Q Consensus 686 ~vlkrk~eE~~a~~k~Lke~le~~k~ 711 (1044)
..++++..++.+....|...|...+.
T Consensus 514 ~~~~~~~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 514 RQARRELEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33666777777777777777765543
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.49 E-value=0.0075 Score=71.22 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001617 420 VLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 451 (1044)
Q Consensus 420 ~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~ 451 (1044)
.|++....+..++..|..+|...++.+..+..
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666555555554443
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.48 E-value=0.0057 Score=82.06 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccccccccc
Q 001617 870 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKE-VEEELKLREQAVAITLARSASGNLHNSLEH 931 (1044)
Q Consensus 870 ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~-l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~ 931 (1044)
++..+..++.++......+...+..++..+.+ +.+-........+.+-.....+.+.+.+.+
T Consensus 987 ~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~~~~~~l~~~~ 1049 (1164)
T TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELSGGTGELILEN 1049 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 44444455555555555555555555544433 444444445555555444444444554443
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.45 E-value=0.0047 Score=82.80 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.1
Q ss_pred EEecccCCCccccc
Q 001617 86 LAYGQTGSGKTYTM 99 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm 99 (1044)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999999987
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.40 E-value=0.0015 Score=77.01 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 396 RQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSR 445 (1044)
Q Consensus 396 r~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~ 445 (1044)
+++|+.|++.|.. +=+++..|+.+|..|..++..++..
T Consensus 41 K~El~~LNDRLA~------------YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 41 KKELQELNDRLAV------------YIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777743 3467888899999999888887764
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.39 E-value=0.026 Score=75.19 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcc-cccccccccccCCCCCCC
Q 001617 870 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKE-VEEELKLREQAVAITLARSASG-NLHNSLEHFADDTSGPPS 941 (1044)
Q Consensus 870 ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~-l~~~l~~~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 941 (1044)
.+..+..++.++......+...+..+...+.+ +..-..........+-+....+ .+.+.+.+.+|..++...
T Consensus 978 r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Gie 1051 (1163)
T COG1196 978 RYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIE 1051 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcE
Confidence 44445555555555555555555555555544 6666666777777777777664 777777776665444333
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.36 E-value=0.021 Score=70.62 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhccccccccccCcccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 363 ETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEY 442 (1044)
Q Consensus 363 eTl~TL~~a~ra~~i~~kp~vn~d~~~~ei~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~ 442 (1044)
-+..|=++-.||+.|+..+++- .....+..+++.|+..+.-|... ..+..++..|-..... |.+++...
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs~~~i~~l~~~~~~-------lr~~l~~~ 1244 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVSAEDIAQLASATES-------LRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3566778899999999888776 55667777888788777777432 1233344444444444 44444444
Q ss_pred HHhhHHHHHHhhhhhcC---------------CCCcccHHHHHHHhhhhhcc
Q 001617 443 RSRCTDVEQRETDAQDG---------------SPCPLKSDGLKRSLNSIEQT 479 (1044)
Q Consensus 443 ~e~~a~l~~~~~~~~~~---------------~~l~~k~~eLe~~L~~~~~~ 479 (1044)
.+.+...+..+.+.... ..+.....+|++.+..++.+
T Consensus 1245 ~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~s 1296 (1758)
T KOG0994|consen 1245 TEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKES 1296 (1758)
T ss_pred HhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444444332222 12333445666666665544
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.34 E-value=0.013 Score=71.78 Aligned_cols=180 Identities=19% Similarity=0.221 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 586 HAHKLKSLEAQILDLKKKQEN-QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 664 (1044)
Q Consensus 586 ~e~kl~eLe~ql~~L~~k~e~-~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk 664 (1044)
|-.++.+|+..-..|....+- -.+|.+++++.|- ..++.+|-+.+++-.+ |+.+....|....++.-|..+|.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~d----m~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDD----MRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHH
Confidence 455666666665544422221 1244444444443 5566666666665544 44555555555666666777777
Q ss_pred HHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccccccccCCcccccccHHHHHHH
Q 001617 665 KEGRRNEYERHKLQALNQR---QKLVLQRKTEEAAMATKRLKELLESRKSSA----RENSAVTNGNLTNGQSNEKSFQRW 737 (1044)
Q Consensus 665 ~e~~k~e~el~~Lq~~~e~---q~~vlkrk~eE~~a~~k~Lke~le~~k~~~----r~~~~~~~~~~~~~~~~~~~~r~~ 737 (1044)
.+.+.+...|.-++.-++. ...-++...+++.+ ..-++.+++.++... ++.+ .-.+..+....-++..+-
T Consensus 336 ~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqss--s~Ee~~SK~leleke~Kn 412 (1195)
T KOG4643|consen 336 VQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSS--SYEELISKHLELEKEHKN 412 (1195)
T ss_pred HHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhHh
Confidence 6666666666666652222 23447777777765 444555555554221 0100 000000111112222344
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 738 LDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 738 l~~ElE~~~-~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
|+-+.|++. ++.+.......+.++-+.+..|..+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 3555555666666666666666666543
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.34 E-value=0.0058 Score=69.31 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001617 635 KVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSAR 714 (1044)
Q Consensus 635 k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r 714 (1044)
........++++...+.....+..++..|+.....++..+..++..+..+...++..+..+.+.+..++..
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~--------- 277 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE--------- 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH---------
Confidence 34444677777777777778888888888877777777777777777666666666666665444333333
Q ss_pred cccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 715 ENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
+......+..++...-+|..|+..-++
T Consensus 278 ---------------------------------~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 278 ---------------------------------MARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344456677777888888888876544
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.33 E-value=0.0054 Score=76.75 Aligned_cols=225 Identities=18% Similarity=0.171 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001617 544 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKR 623 (1044)
Q Consensus 544 e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~ 623 (1044)
+.+++.|+.++..++++++.+.+...++ ..+..+..+++..++.....+..+.++..+.......+.+......+....
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~-~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~ 585 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNA-ADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRD 585 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhcccc
Confidence 3444444445555555555443333332 222334445555455555555555555554444555555554444444444
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 624 LQDEIQFIK---AQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATK 700 (1044)
Q Consensus 624 Le~ei~~~K---~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k 700 (1044)
+++.+..+. .+..+..++++.+++..+.........+..++.+..-++.....+.....+-+. +++...|..+-..
T Consensus 586 ~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~e 664 (1317)
T KOG0612|consen 586 LEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSE 664 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 444433333 333333456666666666655555444444444444444433333332222222 2222222222111
Q ss_pred H--HHHHHHHhhhhh-ccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 701 R--LKELLESRKSSA-RENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVD 776 (1044)
Q Consensus 701 ~--Lke~le~~k~~~-r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~~~ 776 (1044)
. ++..++...+.. ....- .+ +. -+..++..-+.+-.++..++.+...+++.....+.++..++..|+...
T Consensus 665 k~~~e~~~e~~lk~~q~~~eq-~~----~E-~~~~~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~ 737 (1317)
T KOG0612|consen 665 KEALEIKLERKLKMLQNELEQ-EN----AE-HHRLRLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY 737 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH----HH-HHHHHHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 222221111000 00000 00 00 000011111334444555677777888888888888999998887643
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.33 E-value=0.026 Score=70.35 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 600 LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 600 L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+..+......+.+.-..++..+..|.+.+.....-|..+++.|...-......|.. +.+++-++.+...|+-.++.
T Consensus 233 ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k----~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 233 IEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK----MDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666655555555666665555554444444433 45556666666666666665
Q ss_pred HHH
Q 001617 680 LNQ 682 (1044)
Q Consensus 680 ~~e 682 (1044)
.++
T Consensus 309 ~l~ 311 (775)
T PF10174_consen 309 RLE 311 (775)
T ss_pred HHH
Confidence 433
No 59
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.27 E-value=3.6e-08 Score=119.28 Aligned_cols=254 Identities=24% Similarity=0.280 Sum_probs=155.4
Q ss_pred CCCCceEEEEEeCCCCCchhcc---------CCcceEEEeCCC-CceeecCceeEeceecCCCCCChHHHHHHhhHhHHH
Q 001617 6 GEDCCVKVAVHVRPLIGDERAQ---------GCKDCVAVVPGK-PQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1044)
Q Consensus 6 ~~~~~v~V~vRvRP~~~~E~~~---------~~~~~v~~~~~~-~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~ 75 (1044)
++.+.++|+|+|+|........ .......+..+. ..+......|.||.+|.+... +..++.. ..-+++
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~~~~ 379 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQLSQ 379 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHhhhh
Confidence 4556999999999998543110 000000111111 222334467999999987654 5555544 566777
Q ss_pred HhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhcc-CceEEEEEehhhhhhhHHhhcCCCCC
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPC 154 (1044)
Q Consensus 76 ~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1044)
..+.| +++||++++|+++|| .....++.+-++...|..+..... .+.+...+-|+++|-....++.....
T Consensus 380 ~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (568)
T COG5059 380 SSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEEL 450 (568)
T ss_pred hhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777 999999999999999 344566777777888888776543 34555666677777333334433211
Q ss_pred CCCCCCCCCCCCcccCCCCCCceEEecCCCcEEEcCceEEEeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEE
Q 001617 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1044)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~ 234 (1044)
... ....... -.++.+. ...++.. ...-.+.. ....+...+...++..|..++++|.+|+..
T Consensus 451 ~~~-~~~~~~~----------~~~~~~~-----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 512 (568)
T COG5059 451 SKK-KTKIHKL----------NKLRHDL-----SSLLSSI-PEETSDRV-ESEKASKLRSSASTKLNLRSSRSHSKFRDH 512 (568)
T ss_pred CCh-HHHHHHH----------HHHHHHH-----HHhhhhc-chhhhhhh-hhhhhccchhhcccchhhhhcccchhhhhc
Confidence 000 0000000 0000000 0000000 00111111 112567788889999999999999999887
Q ss_pred EEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcccccCCChhhHHHHHHHHHhhhHHHHHHHHHhh
Q 001617 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG 306 (1044)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~IN~SL~~L~~vI~aL~ 306 (1044)
........ ... + ++.|||||+||. .+.+.|.++++...+|++|..+|.+|.++.
T Consensus 513 ~~~~~~~~--------------~~~-~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 513 LNGSNSST--------------KEL-S--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccchhhhh--------------HHH-H--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 54321110 111 1 799999999999 899999999999999999999999999874
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.27 E-value=0.0096 Score=71.99 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001617 687 VLQRKTEEAAMATKRLKELLE 707 (1044)
Q Consensus 687 vlkrk~eE~~a~~k~Lke~le 707 (1044)
.++.+++|+..-..-||.+.+
T Consensus 336 ~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366667777666666666665
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.27 E-value=0.025 Score=67.52 Aligned_cols=36 Identities=11% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 001617 419 QVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRET 454 (1044)
Q Consensus 419 ~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~ 454 (1044)
..+++....+++....+..++..++..|..++....
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666655544
No 62
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.26 E-value=0.02 Score=76.30 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=22.1
Q ss_pred HHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 67 DECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 67 ~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+.|++-.+..|+++.| ||.||||+-.+
T Consensus 12 KSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 12 KSFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred ccCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 3344466666778888855 99999998766
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=98.23 E-value=0.059 Score=70.26 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467899999999876
No 64
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.20 E-value=0.031 Score=65.86 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 647 EQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLK 703 (1044)
Q Consensus 647 ~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lk 703 (1044)
+..|+....+=..+..|+..+++.+.....-+..+..+..-|+|..+++......|-
T Consensus 576 dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 576 DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666666666666666555555555555556665555554444433
No 65
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.13 E-value=0.043 Score=64.88 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCcccccccccccCccCC
Q 001617 881 MKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMSVPAQKQLKYTPGIANG 960 (1044)
Q Consensus 881 ~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1044)
++.....+.+++.++...-.++.....+-.+.+..+.....+.++....++..++..+ .++.+++.+...+++|-..++
T Consensus 395 Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~~~~~~~-~~~~~v~e~s~~~~~p~~~~~ 473 (629)
T KOG0963|consen 395 LRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGATARREE-GSGQPVPESSIMGGGPSLPNG 473 (629)
T ss_pred HhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcchhhhcc-cCCcCCCcccccCCCCCcccc
Confidence 3333334444444444444445555555555567777777676664455555554444 478888999999999988887
Q ss_pred Ccchh
Q 001617 961 SIRES 965 (1044)
Q Consensus 961 ~~~~~ 965 (1044)
.+-..
T Consensus 474 ~~~s~ 478 (629)
T KOG0963|consen 474 GVLSR 478 (629)
T ss_pred ccccc
Confidence 76554
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.11 E-value=0.035 Score=63.01 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 542 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKK 602 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~ 602 (1044)
.|-.+++.|+.+...|+.++..+... .......+...|+..+.++..+|.++..
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~-------~~~~~~~~~~~ye~el~~lr~~id~~~~ 68 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREK-------KGEEVSRIKEMYEEELRELRRQIDDLSK 68 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhc-------ccccCcccccchhhHHHHhHHhhhhHHH
Confidence 45677777777777777666664322 2334556777888888888888776653
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.04 E-value=0.008 Score=71.01 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001617 640 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK 685 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~ 685 (1044)
..++.+...++.+...++-++..|+++..++..++..+..+.+++-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3455566666666666777777777777777777777776665554
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.092 Score=64.67 Aligned_cols=228 Identities=17% Similarity=0.252 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-chHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGS-DTAAL-----KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQK 581 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~-e~~~l-----k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~k 581 (1044)
.++...+..++.+|..+|++...+... .+.-. =.-|++.+.+.-.++..|+..+.....+-.+.. ..-+++..
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~-~~~~~~~d 265 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYI-DALDKVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHH
Confidence 456666666777776666655444321 11111 234667777777777777766655433222210 00111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 582 LQDVHAHKLKSLEAQILDLKK----KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASRE 657 (1044)
Q Consensus 582 l~~~~e~kl~eLe~ql~~L~~----k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~e 657 (1044)
--.++..++.+|+..+.-|+. ......+..+.+.+++-++++|+.+|..-++++......
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~---------------- 329 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHV---------------- 329 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHH----------------
Confidence 223344556666666554442 223344556667777777777777777776666554432
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHH
Q 001617 658 KELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSF 734 (1044)
Q Consensus 658 ke~~qLk~e~~k~e~el~~Lq~~~e~q~---~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~ 734 (1044)
+..++.+....+.+|....-.++... ..++..+.. +..+.++.+..+- .. +.-.+.+.+
T Consensus 330 --l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~---l~~~~~~l~~Kqg------------r~-sqFssk~eR 391 (1200)
T KOG0964|consen 330 --LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAK---LEQKQRDLLAKQG------------RY-SQFSSKEER 391 (1200)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH---HHHHHHHHHHhhc------------cc-cccCcHHHH
Confidence 23333333333333333333332222 222222222 2233333333211 11 233456678
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 735 QRWLDHELEVMVN-VHEVRFDYEKQSQVRAALAEELA 770 (1044)
Q Consensus 735 r~~l~~ElE~~~~-l~e~~~~~~~~~e~r~kl~~El~ 770 (1044)
-.|+..|++.+.. +.+.....+.++.++..+..++.
T Consensus 392 Dkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 392 DKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELK 428 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999988875 44444444444444444444433
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.04 Score=65.85 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 657 EKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESR 709 (1044)
Q Consensus 657 eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 709 (1044)
-.++..+.++....-.+|.+|++++...+..|.+-+-|-+-.+.+|+....+.
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 34566667777777778888888888888777777777776666666655443
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.11 Score=65.25 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=26.7
Q ss_pred ecccCCCccccc------ccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhh
Q 001617 88 YGQTGSGKTYTM------GTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEIL 142 (1044)
Q Consensus 88 YGqtgSGKT~Tm------~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy 142 (1044)
.||.||||+-.+ || |.. .-|=.--+..|...-....+-..+.|.|-|-+|-
T Consensus 114 vGPNGSGKSNVIDsmLFVFG-fRA---~kiR~~klS~LIh~S~~~~~l~SCsV~vhFq~ii 170 (1293)
T KOG0996|consen 114 VGPNGSGKSNVIDSMLFVFG-FRA---SKIRSKKLSALIHKSDGHPNLQSCSVEVHFQKII 170 (1293)
T ss_pred ECCCCCCchHHHHHHHHHhh-hhH---hHHhHHHHHHHHhccCCCCCCcceeEEEeeeeee
Confidence 599999999876 22 110 1122223344443333333333577877776653
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.13 Score=63.65 Aligned_cols=342 Identities=15% Similarity=0.152 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001617 545 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRL 624 (1044)
Q Consensus 545 ~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~L 624 (1044)
+++.+.+.++...+.+++.+..+++.++. ...+...++.+++=++-+|--- .=+..+....++......+.+.+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~-~~~kf~~l~~ql~l~~~~l~l~--~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEA-QSQKFRDLKQQLELKLHELALL--EKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 45666788888888888888888887732 2233344444333222222111 11122333445555566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001617 625 QDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLV---LQRKTEEAAMATKR 701 (1044)
Q Consensus 625 e~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~v---lkrk~eE~~a~~k~ 701 (1044)
+.+|.......-+.+.++..=-....+|+..+++.+..|.+++......+..-....++..+. |+-..+++.-.++-
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878777777766666666655566777888888888887777666555544444433333322 22222222222222
Q ss_pred HHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q 001617 702 LKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFAS 780 (1044)
Q Consensus 702 Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~-~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~ 780 (1044)
.+..+.... ..++.+. .+.++...+........+..++|...++..-...
T Consensus 834 ~k~~l~~~~-----------------------------~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 834 LKQQLEQLE-----------------------------KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 222222111 1111111 2344444444444444555555544433111100
Q ss_pred cCC--CCcCccccchhhccCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-------hhhccc-chhh-hhcc
Q 001617 781 KGL--SPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERD-------RLFTNR-GRWN-QLRS 849 (1044)
Q Consensus 781 ~~~--~~~~~~~~~~~~~~l~~~~~~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~-------~~~~~~-~~~~-~~rs 849 (1044)
..- ..+. -..+..+.+ ...-.+..|+.++.....+.+++...+..+..+. +.|.+. +.++ .-.+
T Consensus 885 t~i~~~~~~---~e~~~~e~~--~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~ 959 (1174)
T KOG0933|consen 885 TEISGLLTS---QEKCLSEKS--DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD 959 (1174)
T ss_pred HHHhhhhhH---HHHHHHHhh--cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence 000 0000 000000000 0001223344444444444444433333332221 111111 0110 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcc
Q 001617 850 MADAKNLLQYMFNSLADARCQLWEKDI-EIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ-AVAITLARSASG 923 (1044)
Q Consensus 850 l~eak~~L~~l~~~~~~~r~ql~e~~~-~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~-~~~~l~~~~~~~ 923 (1044)
.-+|+..|+.|.+.....+..+.-..+ -|...+.+..++....+-.+..+..+.+-++...+ ....|.++-...
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~V 1035 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKV 1035 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777777665554333 35666677777777777777777777666665554 334555554443
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=97.89 E-value=0.22 Score=64.93 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=7.0
Q ss_pred eecCCCCCChHHHHH
Q 001617 53 HVYGSTGSPSSAMFD 67 (1044)
Q Consensus 53 ~Vf~~~~s~q~~vy~ 67 (1044)
-++|+.++--..|++
T Consensus 27 ~I~G~NGsGKSsile 41 (895)
T PRK01156 27 IITGKNGAGKSSIVD 41 (895)
T ss_pred EEECCCCCCHHHHHH
Confidence 345555554444443
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.85 E-value=0.32 Score=65.40 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ------HRIKQEAEQFRQWKASREKEL 660 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~------rkl~~e~~~~r~~k~~~eke~ 660 (1044)
+.++..++.++..|+.. ...+.......+..+..++..+..+...+.-+. ..|...+..|.....+.+.++
T Consensus 382 eeEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444332 334455555666666777777777777766664 666666677766666666666
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 001617 661 LQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 661 ~qLk~e~~k~e~el~~Lq~ 679 (1044)
..++.+....+..+..+..
T Consensus 459 ~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 459 LSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555544
No 74
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.78 E-value=0.17 Score=60.01 Aligned_cols=37 Identities=30% Similarity=0.571 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 535 DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 535 e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
....++..|-++|..|+..+..+-.|+|.|..+++++
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ksl 435 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSL 435 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456888999999999999999999999999999887
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.77 E-value=0.018 Score=71.36 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 001617 389 STEMLKMRQQLEFLQAELCA 408 (1044)
Q Consensus 389 ~~ei~kLr~qi~~L~~eL~~ 408 (1044)
...+.+|+.+|+.|+.+|..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~ 436 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQS 436 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888843
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.16 Score=60.94 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.4
Q ss_pred CcccHhHHHHHHHHHHhh
Q 001617 108 QTGIIPLVMNVLFSKIET 125 (1044)
Q Consensus 108 ~~Giipr~~~~LF~~i~~ 125 (1044)
..||-+.++..|+...+.
T Consensus 43 qS~LP~~VLaqIWALsDl 60 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSDL 60 (1118)
T ss_pred hcCCChHHHHHHHHhhhc
Confidence 357888888888876554
No 77
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.74 E-value=0.23 Score=60.61 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 001617 395 MRQQLEFLQAELCA 408 (1044)
Q Consensus 395 Lr~qi~~L~~eL~~ 408 (1044)
||.|+.+|.++|..
T Consensus 229 Lr~QvrdLtEkLet 242 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLET 242 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888844
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.3 Score=61.67 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhcccccccccccc
Q 001617 907 KLREQAVAITLARSASGNLHNSLEHFA 933 (1044)
Q Consensus 907 ~~~e~~~~~l~~~~~~~~~~~~~~~~~ 933 (1044)
+.++..++.|-+....--.=+.+.+..
T Consensus 652 e~aq~cI~fl~~~nLgraTFi~LDki~ 678 (1293)
T KOG0996|consen 652 ETAQECINFLKKNNLGRATFIILDKIK 678 (1293)
T ss_pred HHHHHHHHHHHHcCCCceeEEehHhhh
Confidence 344444444444444433444444444
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.26 Score=60.88 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 747 NVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 747 ~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
.+.+..-.++.+.+.-..+...|..|+.
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 4666666667776666666666666654
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.69 E-value=0.29 Score=60.28 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhh
Q 001617 419 QVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIE 477 (1044)
Q Consensus 419 ~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~eLe~~L~~~~ 477 (1044)
+.+...+..|.....+-..+...+.+....+...+..-. ..+...+..|+..|..++
T Consensus 122 ~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~--~~~G~a~~~le~~l~~~e 178 (569)
T PRK04778 122 EQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR--FSFGPALDELEKQLENLE 178 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccccchHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333211 244555566666665544
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.66 E-value=0.0046 Score=67.14 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAK 622 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~ 622 (1044)
.+.++..++..+..|+.++..+...+..++. +..++..-.+.|+.++..|..+ |+..........+-..+++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~-~~~~~~~re~~~e~~i~~L~~~---lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEA-SEEKASEREDEYEEKIRDLEEK---LKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555421 2233344446677777777777 44444444455566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEA 646 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~ 646 (1044)
.|+.+|...+..+..+.+.|...+
T Consensus 208 ~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 208 RLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887776665554443
No 82
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.58 E-value=0.45 Score=59.56 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 890 GLLRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 890 ~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
.++..|+..+..-++.|+.++..++-|.+.+-+
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 445556655666666666666666666655443
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.57 E-value=0.47 Score=59.44 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEI 568 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el 568 (1044)
-+.+|..|+..+..++.++..|....
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666667666666677766665433
No 84
>PRK11637 AmiB activator; Provisional
Probab=97.54 E-value=0.11 Score=61.71 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=17.3
Q ss_pred HhhhcCCCCcceeeecccccceeeee-ecccCcchhhHhhh
Q 001617 985 KLAALGQGGKLWRWKRSHHQWLLQFK-WKWQKPWRLSEWIR 1024 (1044)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1024 (1044)
.|+.+|.+|- ....| |+|. |+.-+|-.-..|++
T Consensus 394 ~ig~~g~~g~----~~~~~---l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 394 PIALVGSSGG----QGRPS---LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred eEEeecCCCC----CCCCe---EEEEEEECCEEeChHHHhC
Confidence 4566777762 22122 4454 44445666667764
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.47 E-value=0.087 Score=65.50 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh---------cccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEERDRLF---------TNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKD 875 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~---------~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~ 875 (1044)
....+||.++..+..++...+.++..++.+.+.+ ....+.+.|+.|.|.-.-|..-+......|-+|-.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs-- 622 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS-- 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence 3446777777777776666666666666543211 11122333333433333333333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 876 IEIKEMKEQLKELVGLLRQSEVRRKE 901 (1044)
Q Consensus 876 ~~l~e~k~~~~el~~~l~~~e~e~~~ 901 (1044)
.|.+.+++++.+.+.++.-+.+..+
T Consensus 623 -aLg~akrq~ei~~~~~~~~d~ei~~ 647 (697)
T PF09726_consen 623 -ALGDAKRQLEIAQGQLRKKDKEIEE 647 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566666666555554444433333
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.43 E-value=0.14 Score=63.21 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=11.4
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456788888887755
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.42 E-value=0.57 Score=56.93 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 541 QHFGKKIAELEDEKRTVQKERDHL 564 (1044)
Q Consensus 541 ~~~e~ki~eLe~ei~~l~~e~~~L 564 (1044)
....+++.+|..+|..+.+.++..
T Consensus 168 ~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 168 EENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888777764
No 88
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.40 E-value=0.55 Score=56.20 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCCChhhhHHH
Q 001617 510 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDE-------KRTVQKERDHLLTEIENLASNSDGQTQKL 582 (1044)
Q Consensus 510 l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~e-------i~~l~~e~~~L~~el~~~~~~~~~~~~kl 582 (1044)
.++++..|.-++..+|..++.+. ..-+...+++..|+.. +.+...+.+.|..++.... .+-......
T Consensus 238 kEkqvs~L~~q~~eKen~~kdl~-----~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K-~slq~~~~t 311 (786)
T PF05483_consen 238 KEKQVSLLQTQLKEKENKIKDLL-----LLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIK-QSLQESEST 311 (786)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH-HHHHHHHHH
Confidence 34566666666777776666644 1222333444444433 3455555666666666541 111222222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001617 583 QDVHAHKLKSLEAQILDLK-KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIK---QEAEQFRQWKASREK 658 (1044)
Q Consensus 583 ~~~~e~kl~eLe~ql~~L~-~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~---~e~~~~r~~k~~~ek 658 (1044)
...++..++..-..+.+|. .+......+.+.+..+...+..++.-|..++..-.--+.+++ .++...--..+....
T Consensus 312 q~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ 391 (786)
T PF05483_consen 312 QKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSS 391 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Confidence 2334445555555555554 445556677788877777777777777766655544443333 333333333344444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 659 ELLQLRKEGRRNEYERHKLQALNQRQK------LVLQRKTEEAAMATKRLKELLESR 709 (1044)
Q Consensus 659 e~~qLk~e~~k~e~el~~Lq~~~e~q~------~vlkrk~eE~~a~~k~Lke~le~~ 709 (1044)
++..+-+.....+.++..|...+..-+ ..+.+-.+++.+...+|...|..+
T Consensus 392 eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ 448 (786)
T PF05483_consen 392 ELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIR 448 (786)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555666666677666666444433 335555666666666666666543
No 89
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.25 E-value=0.0015 Score=82.40 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEERD 835 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~ 835 (1044)
+.+..|+.++..++.++..|..++..++.+.
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.18 E-value=0.99 Score=54.66 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 609 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 640 (1044)
Q Consensus 609 ~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~r 640 (1044)
.|.+.+...++-++.++.+++.+++.+.....
T Consensus 281 ~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~g 312 (1265)
T KOG0976|consen 281 VLGDELSQKEELVKELQEELDTLKQTRTRADG 312 (1265)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555566666666666666555443
No 91
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.17 E-value=1.4 Score=56.04 Aligned_cols=89 Identities=27% Similarity=0.355 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRK 665 (1044)
Q Consensus 589 kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~---rkl~~e~~~~r~~k~~~eke~~qLk~ 665 (1044)
++..++++|.++++.- .+.+.+.+.+.+.++..|+.+++.+..+.+.|- ..+.+++...++.+-..+.++.+|++
T Consensus 373 ~~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555554333 235555666666666666666666665555544 23334444444445555666777777
Q ss_pred HhhhhHHHHHHHHH
Q 001617 666 EGRRNEYERHKLQA 679 (1044)
Q Consensus 666 e~~k~e~el~~Lq~ 679 (1044)
..+....+|+.|..
T Consensus 451 ~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 451 KIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777766666654
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.15 E-value=1.2 Score=54.71 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 734 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLK 773 (1044)
Q Consensus 734 ~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~ 773 (1044)
+..+..+.+|+...+..+...+.....+-..++.|+..+.
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677789999999998888888888888888888888774
No 93
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.14 E-value=0.61 Score=51.52 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 654 ASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESR 709 (1044)
Q Consensus 654 ~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 709 (1044)
..+...+..|+.+..++..++...+.++......+-....++...|.+|+..|..+
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888888887777777777777777778888888877777643
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.97 E-value=0.86 Score=56.16 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 545 KKIAELEDEKRTVQKERDHLLTEIE 569 (1044)
Q Consensus 545 ~ki~eLe~ei~~l~~e~~~L~~el~ 569 (1044)
..+..++..+..++.+++.+...+.
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 95
>PRK11281 hypothetical protein; Provisional
Probab=96.96 E-value=1.5 Score=57.53 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 677 LQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 677 Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
++...+.+...+..++......+..|.+.+..++
T Consensus 221 l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666665443
No 96
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=1.5 Score=51.95 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 645 EAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKEL 705 (1044)
Q Consensus 645 e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~ 705 (1044)
+.++....+.++.+++..+..+..++..++-.+..+.+..---++++..+...++.+|+-.
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566666666666666666666666666666666777777777777666655
No 97
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.89 E-value=2.7 Score=54.74 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=42.3
Q ss_pred eEEeEEEEEecCCCcccccCCChhhHHHHHHHH-HhhhHHHHHHHHHhhcccCCCCCCcccCCCCcccccccccCCCCcc
Q 001617 259 YLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHI-NRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSR 337 (1044)
Q Consensus 259 ~~~s~L~~VDLAGsEr~~~t~~~g~r~~E~~~I-N~SL~~L~~vI~aL~~~~~~~~~~~iPyRdSkLTrlLq~~Lggns~ 337 (1044)
....+|.|-|-.|-.-... .+ +.....- -..+-+|..||.++-.+.+ ..+.+|-.-+-+.+=.+|| -++
T Consensus 77 ~AqvkL~f~~~~G~~~~~~-R~----~qlt~k~~~~~~ktles~~~~~~~g~k----~tlS~r~~d~d~~~~~~lG-Vsk 146 (1294)
T KOG0962|consen 77 RAQVKLAFTDVNGETMICT-RT----IQLTQKRTKMEFKTLESVIWAINDGDR----VTLSGRSADLDAEMPLHLG-VSK 146 (1294)
T ss_pred hheeeeeeecCCCcEEEee-hh----hHHHHHHHHHHHHHHhhhheeeecCcc----ccccchhhhhhHHHHHhcC-CcH
Confidence 3456899999888765432 11 1122222 3357788888888874433 4678887777777755554 444
Q ss_pred e
Q 001617 338 T 338 (1044)
Q Consensus 338 t 338 (1044)
+
T Consensus 147 A 147 (1294)
T KOG0962|consen 147 A 147 (1294)
T ss_pred H
Confidence 3
No 98
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.85 E-value=2.6 Score=55.20 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 678 QALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 678 q~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
+.....+...++.++..+.+.+..|++.+..++
T Consensus 203 ~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 203 QELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666666666665444
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=2.3 Score=52.11 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Q 001617 506 LQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDV 585 (1044)
Q Consensus 506 ~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~ 585 (1044)
.+.++...+.+++-+++..-..... ++.....++.++.....++..+.++.+-|..++......- .+
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~-----l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~--------~~ 724 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKE-----LQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQ--------RD 724 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch--------hh
Confidence 3344444555555444433222221 2333445555666666666666666666665555431111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 586 HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQ 648 (1044)
Q Consensus 586 ~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~ 648 (1044)
+-+-.+..+.+-.+|.....+.+++.....-+..++..-.+-++++|+.....+-.+......
T Consensus 725 ~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~ 787 (970)
T KOG0946|consen 725 LLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDN 787 (970)
T ss_pred HHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhh
Confidence 111222222222233333333333333333333333333555666666655544444444333
No 100
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.74 E-value=2.5 Score=52.17 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------HHHHHHHHHHHHHhhhhHHHHHHHH
Q 001617 614 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQ----FRQWK--------ASREKELLQLRKEGRRNEYERHKLQ 678 (1044)
Q Consensus 614 k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~----~r~~k--------~~~eke~~qLk~e~~k~e~el~~Lq 678 (1044)
-.+++..+..|+..+..+-.-...+..-+=++++. +++.+ ...+.++..|+.+.......+..+.
T Consensus 200 l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~ 276 (569)
T PRK04778 200 LDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELD 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555556655555544444444333222222 22222 1235556666655555554444443
No 101
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=2 Score=50.99 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001617 502 EHTLLQNSMDKELNELNRRLEEKESEMKLVGG 533 (1044)
Q Consensus 502 e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~ 533 (1044)
++......+...+..|+..++.+|++++.+..
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456667777777777777777777653
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.71 E-value=2.5 Score=51.80 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001617 615 QKSDEAAKRLQDEIQFIKAQK--VQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQ 689 (1044)
Q Consensus 615 ~k~Ee~~~~Le~ei~~~K~~k--~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlk 689 (1044)
+..++..+.|..+++.+.+.. ..-.++|-+=....++++.+..|-+ .+.+.++.+|+.+..++++.-++.-
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl----~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL----SDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444444444544444332 2222566666666666555444433 3344555566666665555555433
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.65 E-value=1.4 Score=47.99 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001617 392 MLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDV 449 (1044)
Q Consensus 392 i~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l 449 (1044)
|..++.++...+..+.. ....++.........+.+...|.+.+..+.+.+...
T Consensus 3 ~~~l~~eld~~~~~~~~-----~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEE-----AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555555555555533 223344444455555555555555555544444433
No 104
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=3.6 Score=52.13 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCcccccccccccCccCCCcchhh
Q 001617 902 VEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMSVPAQKQLKYTPGIANGSIRESA 966 (1044)
Q Consensus 902 l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1044)
++.-.+-....++..=++.+ |...++-.+.|+.+.| |-.||--.++.+.-
T Consensus 995 F~~~F~~va~~Id~IYK~Lt--nt~g~AyL~~en~~EP-------------yl~GIky~~~pP~K 1044 (1141)
T KOG0018|consen 995 FMACFEHVADNIDRIYKELT--NTEGQAYLGLENPEEP-------------YLDGIKYHCMPPGK 1044 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccccceeecCCCCCcc-------------hhcCccccccCCcc
Confidence 33334444445555555554 4445555566666666 66666666666655
No 105
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=2.3 Score=49.75 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH---HH
Q 001617 512 KELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVH---AH 588 (1044)
Q Consensus 512 ~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~---e~ 588 (1044)
..+.+|+..|.+++.++... +.....+.+....+-.-...++.++-+|..+++.. .....++-++| ++
T Consensus 107 ~kI~eleneLKq~r~el~~~-----q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~----KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNV-----QEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY----KFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34444555555554444442 22234445555555555667777777777777765 33444444443 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFR---QWKASREKELLQLRK 665 (1044)
Q Consensus 589 kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r---~~k~~~eke~~qLk~ 665 (1044)
+--.|.++++.|+.-+-+..-+.-...++++.+.-|+..++..-.-|.=..++|.+.++.++ +++-.+-|++.+...
T Consensus 178 ENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n 257 (772)
T KOG0999|consen 178 ENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRN 257 (772)
T ss_pred hcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 44456666666665554444455556778888888888888877777777799988776554 444445555544332
Q ss_pred Hhh-----hhHHH----------------------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 001617 666 EGR-----RNEYE----------------------RHKLQALNQRQK--LVLQRKTEEAAMATKRLKELLESRKSSAREN 716 (1044)
Q Consensus 666 e~~-----k~e~e----------------------l~~Lq~~~e~q~--~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~ 716 (1044)
-.. .+-+- +.+|..++--+. -+--=..+...+.++.|++.|...-
T Consensus 258 ~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smE------ 331 (772)
T KOG0999|consen 258 AEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSME------ 331 (772)
T ss_pred hhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 111 00000 111111111110 1122234556667777777776332
Q ss_pred cccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 717 SAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
...-..+....+....++-.+..+..+.+..+.+..-++.|++
T Consensus 332 ---------------rek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~r 374 (772)
T KOG0999|consen 332 ---------------REKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRR 374 (772)
T ss_pred ---------------HHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233444455555555567777777777778888887766
No 106
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0022 Score=74.15 Aligned_cols=95 Identities=24% Similarity=0.430 Sum_probs=65.8
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHh----HHHHHHHHH
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIP----LVMNVLFSK 122 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giip----r~~~~LF~~ 122 (1044)
..|....-|.|.++|.. .+..+|+++-.|...-++ .|.|||||||||-.-...-..|-||- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP~-----AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE-----AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcHH-----HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 35777788999988653 467888888888877665 49999999999932111112233321 245567777
Q ss_pred HhhhccCceEEEEEehhhhhhhHHh
Q 001617 123 IETLKDQTEFQLHVSFIEILKEEVR 147 (1044)
Q Consensus 123 i~~~~~~~~~~v~vS~~EIy~e~v~ 147 (1044)
....-....+.-.||||..|+-+.|
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcccc
Confidence 7666566778889999999976544
No 107
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.51 E-value=3.4 Score=50.90 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001617 802 ARMARISSLENMLSISSNSLVAMASQLSEAEER 834 (1044)
Q Consensus 802 ~~~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~ 834 (1044)
.+..-.+.|+.....+=.+++++...+.+++-.
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~ 443 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHR 443 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455667777777767777777766666654
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.45 E-value=0.76 Score=49.35 Aligned_cols=91 Identities=22% Similarity=0.230 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 615 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEE 694 (1044)
Q Consensus 615 ~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE 694 (1044)
.+-+.....|..+++..+...+.| ..++.....-...+++++..++....+.+..+.......+.....+..+...
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~l----e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSL----EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666543 3344444455555666677777777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHHHh
Q 001617 695 AAMATKRLKELLESR 709 (1044)
Q Consensus 695 ~~a~~k~Lke~le~~ 709 (1044)
+......|++.+..+
T Consensus 161 ~~~~~~~L~~~l~~e 175 (239)
T COG1579 161 LSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHhcCHH
Confidence 666666666665433
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.35 E-value=2.3 Score=47.14 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHH
Q 001617 617 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEA----EQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK----LVL 688 (1044)
Q Consensus 617 ~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~----~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~----~vl 688 (1044)
.|--+..|...|.++...|+++...|..+- .+++.....++++...+...+.++..+...|+..++.++ +.|
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L 183 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRL 183 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344456777777777777777777776543 455555666666666666667777777777777666655 669
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 689 QRKTEEAAMATKRLKELLES 708 (1044)
Q Consensus 689 krk~eE~~a~~k~Lke~le~ 708 (1044)
.+++..+.+..+.|...|+.
T Consensus 184 ~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999874
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.33 E-value=7.5 Score=52.85 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWE 873 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e 873 (1044)
+++++|+............+..++..+..+...+.. +.-...+..++-..|...+...-.....+..
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~--~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~ 631 (1486)
T PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARIQRLAA--RAPAWLAAQDALARLREQSGEEFEDSQDVTE 631 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHhhHHHHHHHHHhcchhhcCHHHHHH
Confidence 455666666555555666666666666665543321 2223344455555565555443333333333
No 111
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.26 E-value=6.5 Score=51.46 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.3
Q ss_pred ccEEEecccCCCccccc
Q 001617 83 ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm 99 (1044)
+..+-+|+||||||..|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 33456799999999876
No 112
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.23 E-value=0.0012 Score=83.47 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001617 755 YEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 755 ~~~~~e~r~kl~~El~~L~~ 774 (1044)
+..+......+..|+..|+.
T Consensus 259 i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555543
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.17 E-value=3.6 Score=47.66 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 629 QFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEG 667 (1044)
Q Consensus 629 ~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~ 667 (1044)
..|-..+.+.+..+...+......++..+.+..+|+...
T Consensus 153 ~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 153 GALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555555544444444333
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.09 E-value=5.5 Score=49.01 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001617 871 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 923 (1044)
Q Consensus 871 l~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~ 923 (1044)
+.+....|.+...+..++...+..+...-....+.+......+..+-|...+.
T Consensus 381 l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 381 LEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333444444444444444555555555555666666666666666666554
No 115
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.07 E-value=3.9 Score=47.13 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=50.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001617 611 LKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 673 (1044)
Q Consensus 611 ~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~e 673 (1044)
..+.-..+..+..-+.+|+++++-|..+.+.....++.+++.+..+|.+...|..+.++.+.+
T Consensus 445 vsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 445 VSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777778888888889999998888899999999999999999888888776655
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.97 E-value=6.6 Score=48.91 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH--
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDV-- 585 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~-- 585 (1044)
..+...+.+|+..|.....++.. ..+....+.....++......++.++..|..+++.. .....++-.|
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~----K~rE~rll~dys 100 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSN-----VQAENERLSQLNQELRKECEDLELERKRLREEIKEY----KFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhH
Confidence 44555555555555555444444 334456666777777777888888888887777776 3344444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 001617 586 -HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF---RQWKASREKELL 661 (1044)
Q Consensus 586 -~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~---r~~k~~~eke~~ 661 (1044)
++++--.|.++++.|+.-+-+..-+.-..+.+++.+.-|.++++..-+-|--..++|.+.++.+ |++|..+-||+.
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777666665556666688888888899998888888888889999766554 555555666665
Q ss_pred H
Q 001617 662 Q 662 (1044)
Q Consensus 662 q 662 (1044)
+
T Consensus 181 ~ 181 (717)
T PF09730_consen 181 Q 181 (717)
T ss_pred H
Confidence 5
No 117
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.96 E-value=7.8 Score=49.58 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEER 834 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~ 834 (1044)
.+|.+|+.....+.+++..+..+..+++..
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~ 690 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKN 690 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877777777777776666666544
No 118
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.91 E-value=4.2 Score=46.09 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Q 001617 607 QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK- 685 (1044)
Q Consensus 607 ~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~- 685 (1044)
.++|.+-.+++|.....-+..+++++...++|...++.|-+- -+..|=+..++++.+-..|+..+++..
T Consensus 160 vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa----------lvN~LwKrmdkLe~ekr~Lq~KlDqpvs 229 (552)
T KOG2129|consen 160 VNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA----------LVNSLWKRMDKLEQEKRYLQKKLDQPVS 229 (552)
T ss_pred HHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 456666677777777666777889999999888777665433 334455556666666666666553322
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 686 -------------------LVLQRKTEEAAMATKRLKELLES 708 (1044)
Q Consensus 686 -------------------~vlkrk~eE~~a~~k~Lke~le~ 708 (1044)
+.++.-+.-+++.+.||+..+.+
T Consensus 230 ~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 230 TPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred CCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777753
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.84 E-value=3.1 Score=44.00 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 621 AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATK 700 (1044)
Q Consensus 621 ~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k 700 (1044)
+..+...-+.+|+.-.+.+.++..+-.+|..++...+..+. ....++..+...++.+...|+-.++...+.+.
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~ 178 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQ 178 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555556666666666777777766664444 34455566666666666666666666666666
Q ss_pred HHHHHHHHhh
Q 001617 701 RLKELLESRK 710 (1044)
Q Consensus 701 ~Lke~le~~k 710 (1044)
-|.+.|+...
T Consensus 179 SLe~~LeQK~ 188 (207)
T PF05010_consen 179 SLEESLEQKT 188 (207)
T ss_pred HHHHHHHHHH
Confidence 6766666443
No 120
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=8.2 Score=48.71 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhcccc
Q 001617 363 ETLNTLKYANRARNIQN 379 (1044)
Q Consensus 363 eTl~TL~~a~ra~~i~~ 379 (1044)
|.|+.+.=|+-.+...+
T Consensus 160 EILsMvEEAAGTrmye~ 176 (1174)
T KOG0933|consen 160 EILSMVEEAAGTRMYEN 176 (1174)
T ss_pred HHHHHHHHhhcchhHHH
Confidence 56666666665555544
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.77 E-value=5.4 Score=46.29 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001617 588 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQK 635 (1044)
Q Consensus 588 ~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k 635 (1044)
+++.....+|..+.+ ......+...+++..++.++.+|..+..+.
T Consensus 38 ~~l~q~q~ei~~~~~---~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 38 KQLKQIQKEIAALEK---KIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555333322 222233334455555555555555444443
No 122
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.73 E-value=4.9 Score=45.59 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 001617 539 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN-------QVQLL 611 (1044)
Q Consensus 539 lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~-------~~~l~ 611 (1044)
..+.+-++|+.|+++-..-+..++.|..+.-.++.......+-+-..+=++...|+.+..-|++|-+. ...+.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Confidence 35566778888877765555556666666666644444444455555566777777776666655443 11111
Q ss_pred HH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 612 KQ-------KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 664 (1044)
Q Consensus 612 k~-------k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk 664 (1044)
+. -...---+..|+++|++++..-...++.-.+++.+++..+...+.+..+|+
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQ 298 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 112222356677778887777777777777777777777766666666554
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=6.1 Score=46.39 Aligned_cols=185 Identities=17% Similarity=0.266 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------hhhh
Q 001617 509 SMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNS-------DGQT 579 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~-------~~~~ 579 (1044)
.+..++..|...+++--.+.-+.... .+-..|..+++++.+|+.+...+..|++.+...+...-.++ ....
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 34445555555554433332221111 22334667777788888887777777777655444431111 0111
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 580 QKLQ-------DVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW 652 (1044)
Q Consensus 580 ~kl~-------~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~ 652 (1044)
..+- ..|-.++-+|+.++..+ +....+.......++....++...=+....+| ++|+.+++.++--
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~---r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR----~rlr~elKe~KfR 164 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQL---RQELTNVQEENERLEKVHSDLKESNAAVEDQR----RRLRDELKEYKFR 164 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH----HHHHHHHHHHHHH
Confidence 1111 11444555555553322 22211111111111111111111111111111 5677777776666
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001617 653 KASREKELLQLRKEGRRNEYERHKLQA---LNQRQKLVLQRKTEEAAMATK 700 (1044)
Q Consensus 653 k~~~eke~~qLk~e~~k~e~el~~Lq~---~~e~q~~vlkrk~eE~~a~~k 700 (1044)
.+.+=.+...|+.+.--++..+..|.. .++-.+--.+|-.+|..-.+.
T Consensus 165 E~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 165 EARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555444432 344444444444444443333
No 124
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.64 E-value=8.4 Score=47.62 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDH 563 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eLe~ei~~l~~e~~~ 563 (1044)
..++.++..|.+.++.++..+...... .+..+....+.+|.+|+..+..+++....
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777676666655543221 23445556667777777777666655433
No 125
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.64 E-value=5.8 Score=45.80 Aligned_cols=114 Identities=29% Similarity=0.279 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 617 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 696 (1044)
Q Consensus 617 ~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~ 696 (1044)
....-..|+-++..+|.-.+.|+.+--.+..+-.+ .--.-.++.+-+.+++.++..||. ++...+.+.
T Consensus 409 sr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk----svsqclEmdk~LskKeeeverLQ~--------lkgelEkat 476 (527)
T PF15066_consen 409 SRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK----SVSQCLEMDKTLSKKEEEVERLQQ--------LKGELEKAT 476 (527)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh----HHHHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHH
Confidence 33344567888889999999988766666544322 222345666777778888888776 455555544
Q ss_pred -HHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 697 -MATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLK 773 (1044)
Q Consensus 697 -a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~ 773 (1044)
++..+|+.+-+. +|.|.+.--.|..+.-..-+++|.+|-..+++|-
T Consensus 477 ~SALdlLkrEKe~-------------------------------~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 477 TSALDLLKREKET-------------------------------REQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444445444332 3344444334555555566677777777777763
No 126
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.63 E-value=7.5 Score=47.04 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001617 417 EVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQR 452 (1044)
Q Consensus 417 e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~ 452 (1044)
++..|..++..-+....+|.-.+...+..|+.+++.
T Consensus 241 qvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~ 276 (786)
T PF05483_consen 241 QVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEK 276 (786)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454555555556667777777777778777654
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.62 E-value=2.4 Score=45.51 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKKKQ-ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRK 665 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~k~-e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~ 665 (1044)
-.++++|+.+++.|++.+ .++=+|..+.+.++.+-. .++..+... -.|+.|...+.+....+++....|--
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKq----K~e~ek~e~----s~LkREnq~l~e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQ----KVEEEKNEY----SALKRENQSLMESCENLEKTRQKLSH 88 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHhhhh----hhhhhhhhhHHHHHHHHHHHHHHhhH
Confidence 347888888888887543 233333332222222111 111222222 34566777777778888888888887
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-------ccCCcccccccHHHHHHHH
Q 001617 666 EGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAV-------TNGNLTNGQSNEKSFQRWL 738 (1044)
Q Consensus 666 e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~-------~~~~~~~~~~~~~~~r~~l 738 (1044)
++.-++..+.-|+. |.+-.+++++.+...+++++.+|++-+......... .....+..... ..
T Consensus 89 dlq~Ke~qv~~lEg----Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~---q~--- 158 (307)
T PF10481_consen 89 DLQVKESQVNFLEG----QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPS---QY--- 158 (307)
T ss_pred HHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChh---hh---
Confidence 77777777777665 555677789999999999999999766554322211 00001111110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 739 DHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 739 ~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
-.-.+++|....|..-.+.|++|+.|+-.|..
T Consensus 159 ----~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 159 ----YSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 01134667777888999999999999998864
No 128
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.57 E-value=7.6 Score=46.69 Aligned_cols=73 Identities=29% Similarity=0.327 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKK-KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRK 665 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~-k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~ 665 (1044)
..++..++..+..|+. ....++++.-++...++.+....++|. =+-.+++..+.-.-.+++++..|+.
T Consensus 195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~-----------lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVS-----------LIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555532 233344555555554444443333322 2233333333334444555555554
Q ss_pred Hhhhh
Q 001617 666 EGRRN 670 (1044)
Q Consensus 666 e~~k~ 670 (1044)
+..+.
T Consensus 264 ql~~~ 268 (629)
T KOG0963|consen 264 QLAKA 268 (629)
T ss_pred HHHhh
Confidence 44433
No 129
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.32 E-value=9.9 Score=46.39 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001617 850 MADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 923 (1044)
Q Consensus 850 l~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~ 923 (1044)
+.+--..|+.+..+...++........++..++..+......+..++....-..++.+.....-..++...-.+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566777777777777777777788888888887777777777777777777776666666666665544
No 130
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.30 E-value=0.0047 Score=77.94 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 642 IKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 642 l~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
++.+++.++....+++.++........+.++++..|+.
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~e 398 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEE 398 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555566555554
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.28 E-value=15 Score=48.20 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 542 HFGKKIAELEDEKRTVQKERDHLLTEIEN 570 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~ 570 (1044)
.+..+++.++..+..+...++.+..+...
T Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 347 (908)
T COG0419 319 ELLEKLKSLEERLEKLEEKLEKLESELEE 347 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 132
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=11 Score=46.51 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIK 643 (1044)
Q Consensus 589 kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~ 643 (1044)
.+.++..+++.+++ ...+|.-..+++++++..+.++..+++.+-..|.-++.
T Consensus 665 lI~~lD~~~e~lkQ---~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 665 LIRELDYQIENLKQ---MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444443 23345555566666666666666666666655554443
No 133
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.17 E-value=5.7 Score=42.81 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 640 HRIKQEAEQFRQWKASREKELLQLRKEG 667 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke~~qLk~e~ 667 (1044)
.++...-..+.+.+...+-++..++.+.
T Consensus 131 ~~~~~~e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 131 ERLERLEKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444333
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.15 E-value=2.5 Score=42.05 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 587 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e 587 (1044)
..+...+.+|+.....+|.++..|. +++..|+.++..++..+..+...+.... +....-+.+.
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~ 79 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHH
Confidence 3445556666666666666665544 5555555555555555555444333321 1111112455
Q ss_pred HHHHHHHHHHH
Q 001617 588 HKLKSLEAQIL 598 (1044)
Q Consensus 588 ~kl~eLe~ql~ 598 (1044)
++++-|+.++.
T Consensus 80 rriq~LEeele 90 (143)
T PF12718_consen 80 RRIQLLEEELE 90 (143)
T ss_pred hhHHHHHHHHH
Confidence 66666666644
No 135
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.12 E-value=4.7 Score=41.55 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 651 QWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 651 ~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+..+.+..++..|..+.-+...+...++.
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 33444455555555555555555444444
No 136
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.05 E-value=12 Score=45.68 Aligned_cols=139 Identities=24% Similarity=0.281 Sum_probs=87.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001617 613 QKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQL---RKEGRRNEYERHKLQALNQRQKLVLQ 689 (1044)
Q Consensus 613 ~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qL---k~e~~k~e~el~~Lq~~~e~q~~vlk 689 (1044)
.+.-..+.+..|+.+|..++..-.+..-++..+.+.+++....++.....+ +.+.+....++..+......+.+-+.
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~ 361 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQ 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 334444455555555655555556666666666667766666665555444 66777788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 001617 690 RKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-----NVHEVRFDYEKQSQVRAA 764 (1044)
Q Consensus 690 rk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~-----~l~e~~~~~~~~~e~r~k 764 (1044)
.++.+-...+.+|+..+.++-. ...| .|+|-.. .+-.-...++.+...+.+
T Consensus 362 ~k~~~ke~E~q~lr~~l~~~~~----------------------~s~~--~elE~rl~~lt~~Li~KQ~~lE~l~~ek~a 417 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLSARAS----------------------SSSW--NELESRLTQLTESLIQKQTQLESLGSEKNA 417 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------cCCc--HhHHHHHhhccHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888888775331 1112 2333322 233344556666666777
Q ss_pred HHHHHHHHHhh
Q 001617 765 LAEELAVLKQV 775 (1044)
Q Consensus 765 l~~El~~L~~~ 775 (1044)
+.=.|+.+...
T Consensus 418 l~lqlErl~~~ 428 (511)
T PF09787_consen 418 LRLQLERLETQ 428 (511)
T ss_pred ccccHHHHHHH
Confidence 76677766544
No 137
>PRK09039 hypothetical protein; Validated
Probab=94.91 E-value=3.4 Score=47.49 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 620 AAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 696 (1044)
Q Consensus 620 ~~~~Le~ei~~~K~~k~~l~---rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~ 696 (1044)
++..|..++..++..-.+.. ..++.++...+.+...++-++..++.+.+..+..+..|+..++ ..+.+++.++.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~---~a~~~~~~~l~ 193 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN---VALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33344444444444333332 3444445555555555555555555555555555555544222 22333555555
Q ss_pred HHHHHH
Q 001617 697 MATKRL 702 (1044)
Q Consensus 697 a~~k~L 702 (1044)
.....+
T Consensus 194 ~~~~~~ 199 (343)
T PRK09039 194 RYRSEF 199 (343)
T ss_pred HhHHHH
Confidence 544444
No 138
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.86 E-value=14 Score=45.59 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 878 IKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLA 918 (1044)
Q Consensus 878 l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~ 918 (1044)
+....+.+......+..+...-.++...-...+..+-...|
T Consensus 467 m~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNR 507 (560)
T PF06160_consen 467 MDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANR 507 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444444444443
No 139
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.64 E-value=9.7 Score=42.85 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 576 DGQTQKLQDVHAHKLKSLEAQILDLK----KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 651 (1044)
Q Consensus 576 ~~~~~kl~~~~e~kl~eLe~ql~~L~----~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~ 651 (1044)
.....-++..|-+.++.+..++..|. ++.-+...|...-...+.++.+-+.+=+.+-+-...|-.++..|+.++|.
T Consensus 409 nsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 409 NSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456677888888888888877554 44444556666656666666666666666666667777788888888777
Q ss_pred HHH----------HHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 652 WKA----------SREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 652 ~k~----------~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
... ..+|.-..|+--+|-++.++.-|..
T Consensus 489 lltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKq 526 (593)
T KOG4807|consen 489 LLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQ 526 (593)
T ss_pred HhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHH
Confidence 643 2345556666666667777666655
No 140
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=94.62 E-value=7.3 Score=41.32 Aligned_cols=79 Identities=24% Similarity=0.455 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 001617 538 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKK-----KQENQVQLLK 612 (1044)
Q Consensus 538 ~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~-----k~e~~~~l~k 612 (1044)
.+-..|..++.+|+.++..-..+...+..++..+ .....++...+.++++|+.++...+. .++...++..
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l-----~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL-----KEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999888888888888888887 34566777788899999998775442 3344556666
Q ss_pred HHHhHHHHH
Q 001617 613 QKQKSDEAA 621 (1044)
Q Consensus 613 ~k~k~Ee~~ 621 (1044)
.|..++..+
T Consensus 115 EK~~LEke~ 123 (206)
T PF14988_consen 115 EKARLEKEA 123 (206)
T ss_pred HHHHHHHHH
Confidence 666666555
No 141
>PRK09039 hypothetical protein; Validated
Probab=94.51 E-value=8.3 Score=44.34 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001617 540 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDE 619 (1044)
Q Consensus 540 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee 619 (1044)
...++..+.+++.++..++.++..|......... .....+.++..+..++..+ ...-.....
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~--------~~~~~~~~~~~l~~~L~~~----------k~~~se~~~ 137 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAG--------AGAAAEGRAGELAQELDSE----------KQVSARALA 137 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hcchHHHHHHHHHHHHHHH----------HHHHHHhhH
Confidence 4567777777888777777777776554442200 0011222333333332222 222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 620 AAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGR 668 (1044)
Q Consensus 620 ~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~ 668 (1044)
++..|+.+|+.++.+...++..| ........+....+..|+..+.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L----~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL----DASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777755444333 3333333334444444444333
No 142
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.33 E-value=0.026 Score=60.58 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=30.3
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..||||.-+... + +...|.. +..+...--..|| .+|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-S-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-T-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-c-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 469999887432 3 5666654 4445544222234 4789999999999977
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=9.8 Score=41.55 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001617 634 QKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 678 (1044)
Q Consensus 634 ~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq 678 (1044)
.-+.++..+...+..+...+.++..-+..+.........++..|+
T Consensus 173 ~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 173 TLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444555666666666777777777777777777777766666
No 144
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.29 E-value=12 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001617 414 SSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVE 450 (1044)
Q Consensus 414 ~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~ 450 (1044)
+.+.+..|-.++..+..++..+.+++.....+...+.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~ 56 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQ 56 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777766666555444443
No 145
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.23 E-value=14 Score=42.86 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 616 KSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 616 k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
.+++.+..++.-|.++...-..+.-++-.....|-..+...++++..-+.+..+++.++.+|.-
T Consensus 484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL 547 (622)
T COG5185 484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNL 547 (622)
T ss_pred eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3666677777777777666666777777777777777777777777777777777777776643
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.20 E-value=11 Score=41.88 Aligned_cols=136 Identities=26% Similarity=0.306 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001617 542 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAA 621 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~ 621 (1044)
.+++|++.|+.+...|..+...|..+-... .++.+.+-.+--+.+.+...++..| ...-.+.-+..
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dcv~QL~~An~qia~L----------seELa~k~Ee~ 229 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDCVKQLSEANQQIASL----------SEELARKTEEN 229 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHHHHHhhhcchhHHHH----------HHHHHHHHHHH
Confidence 456777777777777777777766655554 3444444444334444444444433 33333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 622 KRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 695 (1044)
Q Consensus 622 ~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~ 695 (1044)
...+.+|.++-.+.++++++++.=....- ++...+...+.-.+.+..+++.|+.++..=..+|.---+|+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnE----eL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENE----ELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777887766664333222 22223333344444555556666554444444443333333
No 147
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.14 E-value=8 Score=39.86 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001617 544 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKR 623 (1044)
Q Consensus 544 e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~ 623 (1044)
+.++.+|+.++..+...++.|.. +.++...-.+.|+..++.+... |+..........+--.+++..+.+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~--------~ee~~~q~~d~~e~~ik~ltdK---LkEaE~rAE~aERsVakLeke~Dd 176 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSA--------KEEKLEQKEEKYEEELKELTDK---LKEAETRAEFAERRVAKLEKERDD 176 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHcccHHH
Confidence 34555555555555444444322 1222223333455555555554 443333333444555555555555
Q ss_pred HHHHHHHHHHHHH
Q 001617 624 LQDEIQFIKAQKV 636 (1044)
Q Consensus 624 Le~ei~~~K~~k~ 636 (1044)
|+..+..++-...
T Consensus 177 lE~kl~~~k~ky~ 189 (205)
T KOG1003|consen 177 LEEKLEEAKEKYE 189 (205)
T ss_pred HHHhhHHHHHHHH
Confidence 5555555544433
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.02 E-value=7.2 Score=38.88 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAK 622 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~ 622 (1044)
++.+++.|+......+.++..|...+..+ +..+..++.++.+++...+........-..+...+.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~l---------------E~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQL---------------EEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 34444444444444444444444433333 334444444444444333332222222224455555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRI 642 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl 642 (1044)
.|+.++......-.....++
T Consensus 84 ~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444333333
No 149
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.00 E-value=9.3 Score=40.11 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 614 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 614 k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+.++...+..++..++.-...-..|.++++-....|+.....-.+....+..+...+..++..|..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666655554444444444444444444444433
No 150
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.82 E-value=5.4 Score=48.94 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhccccccccccCcccHHHHHHHHHHHHHHHHH
Q 001617 362 EETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAEL 406 (1044)
Q Consensus 362 ~eTl~TL~~a~ra~~i~~kp~vn~d~~~~ei~kLr~qi~~L~~eL 406 (1044)
+.+++.|-+.....+|+...-+-..|...|...||+++..|..+|
T Consensus 366 E~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 366 EACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 444445555555555554444444444455555555555555555
No 151
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.78 E-value=0.018 Score=72.83 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001617 586 HAHKLKSLEAQILDLKKKQ 604 (1044)
Q Consensus 586 ~e~kl~eLe~ql~~L~~k~ 604 (1044)
++.++..++.++.+|+++.
T Consensus 265 ~~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQEN 283 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 152
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.78 E-value=24 Score=44.15 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 645 EAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 696 (1044)
Q Consensus 645 e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~ 696 (1044)
+++-.+......++++..|...+.+...+...+...++.+..+|..--.|+.
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444556666666666655555555555555554444333333333
No 153
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.77 E-value=24 Score=44.14 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRI 642 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl 642 (1044)
+|..++.++.+.+.++++..
T Consensus 390 qLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666544
No 154
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=16 Score=42.15 Aligned_cols=64 Identities=14% Similarity=0.341 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGG----SDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~----~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
.+++.++..+..+++.+|+....+-. -.-.+-+..|.+.|+|+-.-|+.+..++-+++.+-..+
T Consensus 348 qeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreL 415 (521)
T KOG1937|consen 348 QELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETREL 415 (521)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655444432 11122366788888887777776666666655444443
No 155
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.72 E-value=14 Score=41.01 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 640 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+.|.+.+..++..+..+..++.+|+......-..+..|-.
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666665555555444433
No 156
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.70 E-value=32 Score=45.34 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=35.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 847 LRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMK-----EQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSA 921 (1044)
Q Consensus 847 ~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k-----~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~ 921 (1044)
.+.+.++--.+.++.+.......++..+..|+.+.. +...-|....+.+-.++..+..+..+.+.++..+.+...
T Consensus 1000 ~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1000 RERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 444444544555555555555555555555544444 222223333333444444455555555555555555544
No 157
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.59 E-value=7.4 Score=44.42 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 540 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQE 605 (1044)
Q Consensus 540 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e 605 (1044)
+..|+=++.-++.-+..|+..++.|......+. ........+..++..+...|+.++..|+....
T Consensus 137 ~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~-~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 137 KMWYEWRMQLLEGLKEGLEENLELLQEDYAKLD-KQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444333331 12223345555556666777777666665444
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=13 Score=40.50 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 656 REKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 696 (1044)
Q Consensus 656 ~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~ 696 (1044)
..+++.+++.+..+++.+|..+...+..++.+|+.+.+-+.
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666666666655553
No 159
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.54 E-value=0.037 Score=60.46 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=28.5
Q ss_pred hhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 69 CIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 69 ~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
-+.|+|..+..--++.|+..|+||||||+||
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 3578888999999999999999999999999
No 160
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.31 E-value=11 Score=38.86 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001617 604 QENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQ 637 (1044)
Q Consensus 604 ~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~ 637 (1044)
++.-..|....+.+|.....|..+|+.+......
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334445555555555555555555554444433
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.29 E-value=30 Score=43.61 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.9
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
+++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999988
No 162
>PRK06893 DNA replication initiation factor; Validated
Probab=93.25 E-value=0.053 Score=58.64 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=32.1
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++||..++.. + +.. +..+.+.+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 468999999643 2 222 222233344578888999999999999988
No 163
>PRK06620 hypothetical protein; Validated
Probab=93.15 E-value=0.053 Score=57.96 Aligned_cols=49 Identities=29% Similarity=0.339 Sum_probs=33.4
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCC---ccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n---~ti~aYGqtgSGKT~Tm 99 (1044)
...|+||..+.. .+ +...|..+.. +.+. -|+| -.++-||++||||||.+
T Consensus 10 ~~~~tfd~Fvvg-~~-N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 10 SSKYHPDEFIVS-SS-NDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCCchhhEec-cc-HHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 346899988853 23 6777765433 3321 1444 35899999999999998
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.09 E-value=8.3 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 682 QRQKLVLQRKTEEAAMATKRLKEL 705 (1044)
Q Consensus 682 e~q~~vlkrk~eE~~a~~k~Lke~ 705 (1044)
+.=+.+|+...+++...+++++..
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466777777777666666543
No 165
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=93.09 E-value=17 Score=40.17 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCC
Q 001617 877 EIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPM 943 (1044)
Q Consensus 877 ~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1044)
.+.-+..++.-|....+.+..++.+|.+.++..+..+ ++++.+-+.++|-|..
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v--------------~~k~~~~~la~pe~~~ 345 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQV--------------SAKNAMKDLATPESKP 345 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccc--------------chhhhhhhhcCccccc
Confidence 3455566666666667777777777776666555443 3355555666655533
No 166
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.97 E-value=12 Score=40.53 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHH
Q 001617 653 KASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 732 (1044)
Q Consensus 653 k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~ 732 (1044)
.+++|..+..|+++...++.+|..|++-+++|+....-...|..+.-++..-.. ..-.+-+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~-------------------e~c~~le 80 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLM-------------------ESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH-------------------HHHHHHH
Confidence 345666777777777778888888888776665433333333322222211111 1223455
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCCcCcc------ccchhhccCChH--HH
Q 001617 733 SFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGK------NGFARVSSMSPN--AR 803 (1044)
Q Consensus 733 ~~r~~l~~ElE~~~-~l~e~~~~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~~~~~------~~~~~~~~l~~~--~~ 803 (1044)
+.+.++.+++-... .+.-.++.+..-.....++..|+..++.+++.......+.... ..+.....+.|. ..
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~ 160 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYS 160 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhh
Confidence 67888999988766 3666677777777777778888877777666554444332222 122233334444 22
Q ss_pred HHHHHHHHHHHH
Q 001617 804 MARISSLENMLS 815 (1044)
Q Consensus 804 ~~qi~eLe~~~~ 815 (1044)
...+++|+.+-.
T Consensus 161 ~sk~e~L~ekyn 172 (307)
T PF10481_consen 161 DSKYEELQEKYN 172 (307)
T ss_pred hhhHHHHHHHHH
Confidence 256777765543
No 167
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.75 E-value=10 Score=46.61 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGG-------SDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 580 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~-------~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~ 580 (1044)
.+|...++-|+.+|.+.|...+.-.. ..++.+...++.++.|.......|+.--++|++.+++. .+..+
T Consensus 397 aqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q----~~Enk 472 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ----KEENK 472 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH----HHHHH
Confidence 56778888899999887766544331 13566777889999998888888888888888877776 44444
Q ss_pred HHHH
Q 001617 581 KLQD 584 (1044)
Q Consensus 581 kl~~ 584 (1044)
+++.
T Consensus 473 ~~~~ 476 (861)
T PF15254_consen 473 RLRK 476 (861)
T ss_pred HHHH
Confidence 4443
No 168
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.35 E-value=7.4 Score=37.46 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 640 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~r 640 (1044)
..++..|+.++.+|+.+.+.. +.+-..-.+.+..|+..|..+|.-.-..+.
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~---LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTL---LELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888877776655554 444444556677888888888877655443
No 169
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.35 E-value=15 Score=44.65 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh-------hh
Q 001617 510 MDKELNELNRRLEEKESEMKLVGGS---DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDG-------QT 579 (1044)
Q Consensus 510 l~~el~eL~~~Le~kE~e~~~l~~~---e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~-------~~ 579 (1044)
+++++.+++.++...|..+..+... ........+..++..++.++...+.++..+...+..+...-.. ..
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~ 245 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGS 245 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccc
Confidence 4556666666776666666665421 0111122344556666666666665555554444443210000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 580 QKLQDVHAHKLKSLEAQILDLKK 602 (1044)
Q Consensus 580 ~kl~~~~e~kl~eLe~ql~~L~~ 602 (1044)
...-..+..++.+++.++.+|..
T Consensus 246 ~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 246 SVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred ccCCCchHHHHHHHHHHHHHHHH
Confidence 00112345567778888776654
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.29 E-value=39 Score=42.51 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 001617 814 LSISSNSLVAMASQLSEAEE 833 (1044)
Q Consensus 814 ~~~~~~~~~~l~~~l~e~e~ 833 (1044)
+..+...+..++.++.+++.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444
No 171
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.99 E-value=14 Score=36.61 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001617 545 KKIAELEDEKRTVQKE 560 (1044)
Q Consensus 545 ~ki~eLe~ei~~l~~e 560 (1044)
.+|..|+.++...+.+
T Consensus 24 ~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 24 DHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 172
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=48 Score=42.67 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=21.4
Q ss_pred CCCcceEEEeccccccccccccCCCcccHHHHHHHHHHHHHhhcccc
Q 001617 333 GGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQN 379 (1044)
Q Consensus 333 ggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~ra~~i~~ 379 (1044)
+|.+.+.+|=| -.-+...|-..|..+.+--+||++-+
T Consensus 93 ~~G~seY~IDn----------e~VT~eeY~~eLekinIlVkARNFLV 129 (1141)
T KOG0018|consen 93 NGGTSEYMIDN----------EIVTREEYLEELEKINILVKARNFLV 129 (1141)
T ss_pred cCCceeEEEcc----------eeccHHHHHHHHhhcceeeeeeeEEE
Confidence 45556667733 22233446667777777777777644
No 173
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=29 Score=40.17 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=83.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001617 609 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVL 688 (1044)
Q Consensus 609 ~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vl 688 (1044)
.+.+++.++-+.+.+-++-++.+-.+-+.+.++|-.-..+-...+.-+..++.+|+.+..-.+-+-.. -..++....-|
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL 354 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDL 354 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHH
Confidence 55555666666666666666666666666666776666666677777777788888777665544222 11122222223
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 689 QRKTEEAA---MATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAAL 765 (1044)
Q Consensus 689 krk~eE~~---a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl 765 (1044)
.-..+|+. ...+.|.-+++. ...+-.++.+.....|+...+...+..+.+..+++..|
T Consensus 355 ~a~~eei~~~eel~~~Lrsele~-------------------lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreL 415 (521)
T KOG1937|consen 355 EAVDEEIESNEELAEKLRSELEK-------------------LPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETREL 415 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc-------------------CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333 233344444431 22333456666677777666666666777777777777
Q ss_pred HHHHHHH
Q 001617 766 AEELAVL 772 (1044)
Q Consensus 766 ~~El~~L 772 (1044)
..+...+
T Consensus 416 qkq~ns~ 422 (521)
T KOG1937|consen 416 QKQENSE 422 (521)
T ss_pred HHHHHHH
Confidence 7766554
No 174
>PRK09087 hypothetical protein; Validated
Probab=91.72 E-value=0.11 Score=55.93 Aligned_cols=47 Identities=26% Similarity=0.212 Sum_probs=32.4
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+||..+.. .+ +..+|.. +.....-.+..++-||++||||||.+
T Consensus 15 ~~~~~~~~Fi~~-~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 15 DPAYGRDDLLVT-ES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCCChhceeec-Cc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHH
Confidence 346899998852 23 5667763 33322223556899999999999998
No 175
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.61 E-value=20 Score=37.68 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 545 KKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 545 ~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
.+|.+|+.++.+++..++.+..|...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777766655554
No 176
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.47 E-value=29 Score=39.34 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 642 IKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 642 l~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
.++++...+..+.+...++.++.++.+.+..++..|-.
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~ 158 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.41 E-value=21 Score=37.68 Aligned_cols=18 Identities=0% Similarity=0.089 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001617 390 TEMLKMRQQLEFLQAELC 407 (1044)
Q Consensus 390 ~ei~kLr~qi~~L~~eL~ 407 (1044)
..|..|+.+|..++....
T Consensus 27 ~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467778888888776653
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.22 E-value=64 Score=42.79 Aligned_cols=24 Identities=4% Similarity=0.105 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 542 HFGKKIAELEDEKRTVQKERDHLL 565 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~L~ 565 (1044)
.+++++.....++.+++.+.....
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~ 129 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQ 129 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444433
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.10 E-value=0.13 Score=62.74 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=33.9
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||..+... + +...|. .+..++...-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999776422 2 454553 344555554456776 899999999999988
No 180
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.64 E-value=47 Score=40.26 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=26.2
Q ss_pred cccCCCcccHHHHHHHHH--HHHHhhcccccccc-ccCcccHHHHHHHHHHHHHHHHH
Q 001617 352 SCISPADINAEETLNTLK--YANRARNIQNKPIV-NRDPMSTEMLKMRQQLEFLQAEL 406 (1044)
Q Consensus 352 ~~vsp~~~~~~eTl~TL~--~a~ra~~i~~kp~v-n~d~~~~ei~kLr~qi~~L~~eL 406 (1044)
..-+|++.-....++++- |-..-...+....- -..-...++..++.++...+.++
T Consensus 127 s~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l 184 (498)
T TIGR03007 127 SYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRL 184 (498)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776666666652 33222211111100 00112345666666666666666
No 181
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.61 E-value=35 Score=38.66 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCCccc
Q 001617 651 QWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLV---LQRKTEEAAMATKRLKELLESRKSSARENSA-VTNGNLTN 726 (1044)
Q Consensus 651 ~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~v---lkrk~eE~~a~~k~Lke~le~~k~~~r~~~~-~~~~~~~~ 726 (1044)
+..+...+++.-|-.+...+=.+...|-...++.... .++...|+.+-+.+|.--|.++-...|..-. ...|++.+
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsp 500 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSP 500 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCc
Confidence 3345556666666666666666666665555554432 6778888888888887777766544332211 12222222
Q ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 727 -GQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 727 -~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
.+.+. +=|+|++.++.|. .+..+..+...|..||+...+
T Consensus 501 laqgkd-------ayELEVLLRVKEs--EiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 501 LAQGKD-------AYELEVLLRVKES--EIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred cccCcc-------hhhHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 11111 2688998887764 566777777778888875433
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.59 E-value=18 Score=35.44 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 680 LNQRQKLVLQRKTEEAAMATKRLKELLE 707 (1044)
Q Consensus 680 ~~e~q~~vlkrk~eE~~a~~k~Lke~le 707 (1044)
.++.+...+++++.++...|+-|-..++
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555544443
No 183
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.57 E-value=0.33 Score=58.13 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=31.0
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||..... .. +...|.. +..+...--..|| .+|-||++|+||||.+
T Consensus 117 ~~~tfd~fv~g-~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVVG-KS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCcccccccC-CC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 56899984432 22 4555554 3444443223344 4788999999999998
No 184
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.47 E-value=0.18 Score=59.97 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=32.9
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+||..+.. .+ +...|..+. .++.. -..||. +|-||++|+||||.+
T Consensus 99 ~~~~tFdnFv~g-~~-n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVVG-PG-NSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCcccccccC-Cc-hHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 356999987742 23 555665543 33332 123675 999999999999988
No 185
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=53 Score=40.40 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 539 LKQHFGKKIAELEDEKRTVQKERDH 563 (1044)
Q Consensus 539 lk~~~e~ki~eLe~ei~~l~~e~~~ 563 (1044)
++..|+..+.+++.+.--.+.....
T Consensus 159 lr~k~dss~s~~q~e~~~~~~~~~~ 183 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEMRAKR 183 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444443333
No 186
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.20 E-value=48 Score=40.67 Aligned_cols=259 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC-CCCcccHHHHHHHh
Q 001617 395 MRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG-SPCPLKSDGLKRSL 473 (1044)
Q Consensus 395 Lr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~-~~l~~k~~eLe~~L 473 (1044)
+..-++.++.+... .......+......++........++....+....+.-........ ...+..+..++..+
T Consensus 5 ~qel~~~~~~e~~~-----~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rf 79 (916)
T KOG0249|consen 5 LQELLEKQQHEQAQ-----SKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRF 79 (916)
T ss_pred hHHHHHHHHHHHhh-----cccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHH
Q ss_pred hhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 001617 474 NSIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDE 553 (1044)
Q Consensus 474 ~~~~~~~~~~~e~~~~~~~e~~e~~~e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~e 553 (1044)
-....--........+.+.++..-.... ..+.+.+.-|+.+|+..|..+.. -.. -..+-+++.+
T Consensus 80 lnaqre~t~~~d~ndklE~~Lankda~l------rq~eekn~slqerLelaE~~l~q---------s~r-ae~lpeveae 143 (916)
T KOG0249|consen 80 LNAQRESTSIHDLNDKLENELANKDADL------RQNEEKNRSLQERLELAEPKLQQ---------SLR-AETLPEVEAE 143 (916)
T ss_pred HhccCCCCCcccchHHHHHHHhCcchhh------chhHHhhhhhhHHHHHhhHhhHh---------HHh-hhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 001617 554 KRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEA-AKRLQDEIQFIK 632 (1044)
Q Consensus 554 i~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~-~~~Le~ei~~~K 632 (1044)
...-.++.-......... ++++..|+.++.++...-....+..++...+.+. ...-...++--+
T Consensus 144 l~qr~~al~~aee~~~~~---------------eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhl 208 (916)
T KOG0249|consen 144 LAQRNAALTKAEEHSGNI---------------EERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHL 208 (916)
T ss_pred HHHHHHHHHHHHHhhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHH
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001617 633 AQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQ 689 (1044)
Q Consensus 633 ~~k~~l~---rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlk 689 (1044)
+.+.+.. ..|.++++.+++....+.+...+|.....++..++.+|......+...+.
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mr 268 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELR 268 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhc
No 187
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.19 E-value=35 Score=38.03 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 641 RIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 641 kl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
++..++-+.+..-...--+...|+.-.++.+.|-..++.+++.-......|.+|.+..+++|.|.+.-..
T Consensus 110 kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 110 KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555666677777777788888888888888888888999999999999998887544
No 188
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.18 E-value=15 Score=36.77 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAL 680 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~ 680 (1044)
.++.....++.....+...++.+-+.++..+....--..+...+.++++.|+.+|+..
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444455555555555555555566667777777777777653
No 189
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.09 E-value=35 Score=38.65 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 540 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN 606 (1044)
Q Consensus 540 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~ 606 (1044)
+..|+=+++-++.=+..|...++.+......+. ...+....+...+.++...|..++..|++....
T Consensus 132 ~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~-~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 132 KMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLM-KELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445554444444444444444444444333331 122233455555666777777776666655444
No 190
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=61 Score=40.33 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001617 864 LADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 923 (1044)
Q Consensus 864 ~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~ 923 (1044)
+.+....+..++.++.....++.++...+..+..+...+.....-.++.+..|.+.....
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455555555555555555555555555555555555555555555555555444
No 191
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.74 E-value=59 Score=40.00 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 748 VHEVRFDYEKQSQVRAALAEELA 770 (1044)
Q Consensus 748 l~e~~~~~~~~~e~r~kl~~El~ 770 (1044)
++.....+..+.-+...+..+|.
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 192
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.27 E-value=0.65 Score=55.41 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=31.1
Q ss_pred eeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 48 ~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|+||..+.. .+ +...|.. +..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999987743 23 5555643 4444432112244 4889999999999988
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.18 E-value=18 Score=41.99 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=21.3
Q ss_pred EEeCCHHHHHHHHHHhhcccccccCCCCC-CCCCceeEEEEEEEEE
Q 001617 194 VSVSSLKEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 238 (1044)
Q Consensus 194 ~~V~s~~e~~~~l~~g~~~R~~~st~~n~-~SSRSH~ifti~v~q~ 238 (1044)
+...+..++..++..-+.. .+|. .+---|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efNGk------~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFNGK------QFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcCCC------cCCCCCccceeEEEEEEEEEE
Confidence 5567777777777653221 2221 1123488877766543
No 194
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.18 E-value=38 Score=37.03 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001617 640 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 673 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~e 673 (1044)
..|..+...||+...+++.++.+|+.+...+..+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777788877777766666666555544444
No 195
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.11 E-value=40 Score=37.25 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001617 602 KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 681 (1044)
Q Consensus 602 ~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~ 681 (1044)
..+...+++..-...+++.+..|+++=--+++ +++....--...+|-+..+..+. ..-+.+|++..
T Consensus 204 ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQ-----------QLddA~~K~~~kek~ViniQ~~f---~d~~~~L~ae~ 269 (305)
T PF14915_consen 204 NEQDKVNKYIGKQESLEERLSQLQSENMLLRQ-----------QLDDAHNKADNKEKTVINIQDQF---QDIVKKLQAES 269 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHH
Confidence 34445555555555555666655555333333 33333332333344444443332 22356777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 682 QRQKLVLQRKTEEAAMATKRLKELL 706 (1044)
Q Consensus 682 e~q~~vlkrk~eE~~a~~k~Lke~l 706 (1044)
+++.-+|..+..|+...-.-|++-+
T Consensus 270 ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 270 EKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777778888888877666666654
No 196
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.97 E-value=34 Score=43.34 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 614 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 649 (1044)
Q Consensus 614 k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~ 649 (1044)
+..+.+....|...++..+..+..|.++++.-+...
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555444443
No 197
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.89 E-value=0.29 Score=56.86 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=32.5
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..|+||..... .+ +...|. +...|.....+.--.||-||++|+||||.|
T Consensus 81 ~~~ytFdnFv~g-~~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVG-PS-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeC-Cc-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 456999987753 23 454443 233333333344445899999999999998
No 198
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.67 E-value=23 Score=42.48 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 615 QKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF 649 (1044)
Q Consensus 615 ~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~ 649 (1044)
..+|-+.-+|-++|..+|=+.+.+.+.-.+.-+++
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 45555556666666666666655554333333333
No 199
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.64 E-value=48 Score=37.53 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEIEN 570 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el~~ 570 (1044)
.++.+..++.....+..+++.+..++..
T Consensus 41 ~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 41 LQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566665555544
No 200
>PRK05642 DNA replication initiation factor; Validated
Probab=88.64 E-value=0.29 Score=53.15 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=28.9
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCC-CccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||..+.. + +...+..+ ..+.... .++ ...++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~~a~~~~-~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NAAALGYV-ERLCEAD-AGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hHHHHHHH-HHHhhcc-ccCCCCeEEEECCCCCCHHHHH
Confidence 36899998842 2 33333322 2222211 122 356889999999999987
No 201
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=88.36 E-value=0.33 Score=53.35 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=13.8
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
-...||+|||||++.+
T Consensus 89 I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567999999999987
No 202
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.30 E-value=38 Score=35.92 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 635 KVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 635 k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+.....+|..-.+..-..+.....++..|+..+++.+..+..|+.
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666667777788888888887777777765
No 203
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.26 E-value=0.35 Score=60.20 Aligned_cols=93 Identities=22% Similarity=0.390 Sum_probs=57.4
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccH--h--HHHHHHHHHHh
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGII--P--LVMNVLFSKIE 124 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Gii--p--r~~~~LF~~i~ 124 (1044)
|....=|.|.+. |..-+. .++..+-.|.... +.+|.|||||||||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~ai~----~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKAIA----KLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHHHH----HHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444455888877 444444 4566666664333 378999999999994322222223333 1 24456666665
Q ss_pred hhccCceEEEEEehhhhhhhHHh
Q 001617 125 TLKDQTEFQLHVSFIEILKEEVR 147 (1044)
Q Consensus 125 ~~~~~~~~~v~vS~~EIy~e~v~ 147 (1044)
..-....+...||||..|.-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 55444558889999999976654
No 204
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.20 E-value=0.25 Score=58.21 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=24.8
Q ss_pred hHHHHhhcCCCccEEEecccCCCcccccc
Q 001617 72 PLVDGLFQGYNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 72 plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
..+..++..-++.|+.-||||||||+||+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34556788889999999999999999994
No 205
>PRK11281 hypothetical protein; Provisional
Probab=88.06 E-value=1.1e+02 Score=40.87 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 001617 541 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQI 597 (1044)
Q Consensus 541 ~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql 597 (1044)
.++++++.+++.+..+.+.++..+...+...... -+.++..-.+...++++++.++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~-PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQ-PERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888777777766665211 1222222233444555555554
No 206
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=0.78 Score=53.14 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=20.6
Q ss_pred hHHHHhhcCCC-ccEEEecccCCCccccc
Q 001617 72 PLVDGLFQGYN-ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l~G~n-~ti~aYGqtgSGKT~Tm 99 (1044)
.++..++.|.- ..++.||+||||||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33445555543 34999999999999988
No 207
>PRK12377 putative replication protein; Provisional
Probab=87.96 E-value=0.42 Score=52.21 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=33.5
Q ss_pred eeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 48 ~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+||........ +..++.. +..++..+..+. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 3478876543322 4555543 566777776654 46888999999999998
No 208
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.68 E-value=31 Score=34.19 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 545 KKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 545 ~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
+.+..|+.++..+..++..|..++..+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444444444
No 209
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.63 E-value=0.39 Score=56.66 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=30.6
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..|+||.... . ..+...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g-~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-G-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-C-CcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 35789998442 1 224555543 3344443212234 4788999999999988
No 210
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.57 E-value=81 Score=38.91 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
Q 001617 856 LLQ-YMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEV----------------------RRKEVEEELKLREQA 912 (1044)
Q Consensus 856 ~L~-~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~----------------------e~~~l~~~l~~~e~~ 912 (1044)
+|+ ++.+....++.+|.+.+..|.+.++.-.-.+-.+++++- +-..|.+++.+.+.-
T Consensus 575 alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerd 654 (739)
T PF07111_consen 575 ALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERD 654 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 333555556667777777777766655544443333221 112266666666666
Q ss_pred HHHHH
Q 001617 913 VAITL 917 (1044)
Q Consensus 913 ~~~l~ 917 (1044)
.+-|+
T Consensus 655 kNl~l 659 (739)
T PF07111_consen 655 KNLML 659 (739)
T ss_pred hhHHH
Confidence 66666
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.49 E-value=31 Score=37.72 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 580 QKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKE 659 (1044)
Q Consensus 580 ~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke 659 (1044)
.+-+.+|+.+|..++.+ .+..+....+.......++++.+..+.+-..+.+.+. .+..+...+........++
T Consensus 4 Er~k~Ele~rL~q~eee---~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~----eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEE---MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQ----EAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666 3322233222222223333333333333333322222 2334444444444445555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001617 660 LLQLRKEGRRNEYERHKLQALNQRQK---LVLQRKTEEAAMATKRLKEL 705 (1044)
Q Consensus 660 ~~qLk~e~~k~e~el~~Lq~~~e~q~---~vlkrk~eE~~a~~k~Lke~ 705 (1044)
..+|..+.+....++..|....++.. .-|+.+..++.....+-++.
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655333332 33555555544433333333
No 212
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.48 E-value=43 Score=35.59 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 660 (1044)
Q Consensus 589 kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~ 660 (1044)
.+-+.+..+..|+..-.....+...+...+..+..|+.++..+...+....++++.. |=..++.++++.
T Consensus 55 qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~q---fl~EK~~LEke~ 123 (206)
T PF14988_consen 55 QLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQ---FLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333444444466666777778888899999999999999988888887766555543 333344444443
No 213
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.46 E-value=1.3e+02 Score=41.26 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 681 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~ 681 (1044)
.+..++..+......+...+..++...+.......+++..+.++.......+..+..+.
T Consensus 907 ~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 907 EASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334443333334555555555555555555666666655555555555555544
No 214
>PRK08116 hypothetical protein; Validated
Probab=87.10 E-value=0.42 Score=53.00 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=33.8
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhc--CCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~--G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++||.... . ..+...|. .+...++++.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~~-~-~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-D-KGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-C-hHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887553 2 22444554 35666666653 34556999999999999988
No 215
>PF15294 Leu_zip: Leucine zipper
Probab=87.09 E-value=25 Score=38.71 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001617 682 QRQKLVLQRKTEEAAMATKRL 702 (1044)
Q Consensus 682 e~q~~vlkrk~eE~~a~~k~L 702 (1044)
..-+.++.+|.+++.+.+++|
T Consensus 256 ~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 256 RNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHhHHHHHhccHHHHHHHHHh
Confidence 333445666666666655554
No 216
>PRK06526 transposase; Provisional
Probab=87.02 E-value=0.44 Score=52.31 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.7
Q ss_pred EEEecccCCCcccccc
Q 001617 85 VLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm~ 100 (1044)
|+.||++|+||||.+.
T Consensus 101 lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 101 VVFLGPPGTGKTHLAI 116 (254)
T ss_pred EEEEeCCCCchHHHHH
Confidence 7899999999999983
No 217
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.99 E-value=47 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 640 HRIKQEAEQFRQWKASREKE 659 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke 659 (1044)
.+|++|+..|++--.++|++
T Consensus 30 ~~~reEl~EFQegSrE~Eae 49 (333)
T KOG1853|consen 30 LQMREELNEFQEGSREIEAE 49 (333)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 46788888888776655543
No 218
>PRK08727 hypothetical protein; Validated
Probab=86.98 E-value=0.31 Score=52.89 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=27.0
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCC-CccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||..+... + + .+.. +.++ ..|+ .-.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~~-~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAP-D-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCc-H-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHH
Confidence 357999877422 2 2 2221 1222 2233 245999999999999988
No 219
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.97 E-value=0.43 Score=48.84 Aligned_cols=32 Identities=34% Similarity=0.354 Sum_probs=22.6
Q ss_pred hhHhHHHHhhcC-CCccEEEecccCCCcccccc
Q 001617 69 CIAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 69 ~~~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
++..+++.+-.+ .+..++..|+||||||++|.
T Consensus 11 ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 11 AIARIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 344555555554 46667778999999999993
No 220
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.96 E-value=0.65 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=20.0
Q ss_pred HHHHhh-cCCCccEEEecccCCCccccc
Q 001617 73 LVDGLF-QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l-~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..++ .+....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333344 345567899999999999987
No 221
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.82 E-value=0.43 Score=51.83 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=30.6
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..|+||..+.. + +...+.. +..++. ......++-||++|+||||.+
T Consensus 16 ~~~~~fd~f~~~--~-n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 16 PDDETFASFYPG--D-NDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCcCCccccccC--c-cHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 346899977742 3 4555543 233322 223347899999999999998
No 222
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.74 E-value=1.1e+02 Score=39.44 Aligned_cols=272 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHH
Q 001617 389 STEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDG 468 (1044)
Q Consensus 389 ~~ei~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~e 468 (1044)
.+++..++.++..++.++.. ..+.++.....+......+..+.++.+.+.........+....+ .+...+..
T Consensus 635 ee~~~~~~~~~~~~~~~~r~-----lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie---~~~~~l~~ 706 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRE-----LEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE---NLVVDLDR 706 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------chHHHHHH
Q 001617 469 LKRSLNSIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGS------DTAALKQH 542 (1044)
Q Consensus 469 Le~~L~~~~~~~~~~~e~~~~~~~e~~e~~~e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~------e~~~lk~~ 542 (1044)
.++.+. ..+......-..+..+.-....++-.+-.+....... +..-..-.
T Consensus 707 qkee~~-----------------------~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~ie 763 (1072)
T KOG0979|consen 707 QEEEYA-----------------------ASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIE 763 (1072)
T ss_pred HHHHHH-----------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK-KKQENQVQLLKQKQKSDEAA 621 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~-~k~e~~~~l~k~k~k~Ee~~ 621 (1044)
.+.++..++.-+.-++.-.+-+...++.. ...+...+. +..++.+...+..+. .+-+.+..+.+.-...=.++
T Consensus 764 a~~~i~~~e~~i~~~~~~~~~lk~a~~~~----k~~a~~~~~--~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~ 837 (1072)
T KOG0979|consen 764 AERKIEKLEDNISFLEAREDLLKTALEDK----KKEAAEKRK--EQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTM 837 (1072)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhccc--chhHHHhhhccccccccchhhHHHHHHHHHhCCCcH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 622 KRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKR 701 (1044)
Q Consensus 622 ~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~ 701 (1044)
..|.+.|...+.+......-=..-..+|.. ++.++-+|.....+....+..+.......+++|..+++++...+..
T Consensus 838 ~eld~~I~~e~t~~~~~~n~ne~~vq~y~~----r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~ 913 (1072)
T KOG0979|consen 838 DELDQAITDELTRALKFENVNEDAVQQYEV----REDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINE 913 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 223
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.59 E-value=47 Score=37.66 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001617 618 DEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 618 Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
+.++..+...|+....++.++.
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 224
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.19 E-value=63 Score=36.23 Aligned_cols=105 Identities=27% Similarity=0.272 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 585 VHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 664 (1044)
Q Consensus 585 ~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk 664 (1044)
.+.++++.|+.+...|+. +..+|.......|++- .+|+...-.++.........+..+++.-.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~---Ea~~L~~et~~~EekE--------------qqLv~dcv~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRS---EASQLKTETDTYEEKE--------------QQLVLDCVKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhHHHhhccHHH--------------HHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 355666667666444442 2233333333333322 23333333344444444555666666666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 665 KEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 665 ~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
.+..+...++.+|.++.-. ++++.....+.+..|...|..-|
T Consensus 227 Ee~~rQQEEIt~Llsqivd----lQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVD----LQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666777777777664333 44455555555555555555433
No 225
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.02 E-value=16 Score=41.52 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 652 WKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 652 ~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
....+..+...++.+..-...++.+|+.
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555555555543
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.88 E-value=0.5 Score=50.64 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=31.1
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||.... . . +..++... ..++ ..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 4588888773 2 2 34444432 2222 3566778999999999999988
No 227
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.86 E-value=1.1e+02 Score=39.29 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001617 423 ERIAWLEAANEDLCRELHEYRSRCTDVE 450 (1044)
Q Consensus 423 e~i~~Le~en~~L~~eL~~~~e~~a~l~ 450 (1044)
....+|..+..++..++...+..+....
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665555554444
No 228
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.85 E-value=45 Score=36.50 Aligned_cols=124 Identities=26% Similarity=0.347 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001617 543 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAK 622 (1044)
Q Consensus 543 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~ 622 (1044)
.+++-.+|+..+..++++......++... +.....|+.+ ++..++....|.+.....++...
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~---------------e~~a~~Leek---~k~aeeea~~Le~k~~eaee~~~ 64 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEES---------------EETAEELEEK---LKQAEEEAEELEQKRQEAEEEKQ 64 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888887777766555544 2233333333 33333333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 695 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~ 695 (1044)
.|..........+..|. .-....+.++.+|..+..+++.+...++......+..+.+...++
T Consensus 65 rL~~~~~~~~eEk~~Le-----------~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLE-----------QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHH------------H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333322232222 223334556666666666666676666665555544444444443
No 229
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.84 E-value=62 Score=35.85 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+++-.+++.+-.-+.++.+|..+....++.-.-+...+...+.....++.+++....
T Consensus 116 dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trd 172 (305)
T PF14915_consen 116 DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRD 172 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555666666666666665555555555555555555555555544
No 230
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.73 E-value=0.54 Score=50.58 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=32.0
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCcccccc--cCCCCCCCcccH
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGFKDGYQTGII 112 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~--g~~~~~~~~Gii 112 (1044)
+.|++.++.-..-+.|+..|+|||||++||. -++.+...+|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 4677788888888889999999999999982 234444555543
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.65 E-value=0.66 Score=50.59 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=31.7
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+||...... ..+..++.. +..+++.+..|+ ..++.||++|+||||.+
T Consensus 67 ~~~tFdnf~~~~-~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVEC-EGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCCC-chHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 356888654322 224445554 344555554443 36889999999999988
No 232
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.51 E-value=0.6 Score=45.26 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=20.8
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..+...+.......|+.+|++|+|||+++
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 334444444434557889999999999876
No 233
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.39 E-value=57 Score=34.97 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001617 636 VQLQHRIKQEAEQFRQWKA 654 (1044)
Q Consensus 636 ~~l~rkl~~e~~~~r~~k~ 654 (1044)
..-+.+|++|+..+|+..+
T Consensus 163 lesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334566666666655443
No 234
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.37 E-value=0.5 Score=50.88 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=31.0
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|+||.+++. . +..++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 46899998842 2 233433 24444431 234567999999999999987
No 235
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.34 E-value=39 Score=33.11 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 734 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVL 772 (1044)
Q Consensus 734 ~r~~l~~ElE~~~~l~e~~~~~~~~~e~r~kl~~El~~L 772 (1044)
...|..+....-..+.++...+.++...+.-|-.+|+.+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346777666666667777777777777777777666543
No 236
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.32 E-value=84 Score=36.90 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 688 LQRKTEEAAMATKRLKELLE 707 (1044)
Q Consensus 688 lkrk~eE~~a~~k~Lke~le 707 (1044)
++..+.++.+....++..++
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 237
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.11 E-value=0.75 Score=53.26 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.4
Q ss_pred HHHHhhc-CCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~-G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..++. +...+++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444443 45668999999999999987
No 238
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.99 E-value=69 Score=35.63 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001617 549 ELEDEKRTVQKERDHLL 565 (1044)
Q Consensus 549 eLe~ei~~l~~e~~~L~ 565 (1044)
+|..++..+-..++.+.
T Consensus 31 El~~~~~~~~ekRdeln 47 (294)
T COG1340 31 ELRKEASELAEKRDELN 47 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334433344433
No 239
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=15 Score=44.24 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=17.9
Q ss_pred ccHhHHHHHHHHHHhhhccCceEEEEEehhhh
Q 001617 110 GIIPLVMNVLFSKIETLKDQTEFQLHVSFIEI 141 (1044)
Q Consensus 110 Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EI 141 (1044)
|.|.++...|=+.+....-+.+..|.=+|-.|
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~gGi 195 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESYGGI 195 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeccCcc
Confidence 67777777776666654334444444444443
No 240
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.66 E-value=1.3e+02 Score=38.43 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 001617 541 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK-----------KKQENQVQ 609 (1044)
Q Consensus 541 ~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~-----------~k~e~~~~ 609 (1044)
.+++.-+++--.++..+.+|.+....+.-.. .-..-.+++.+++.+|.++..++..+. .+......
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~~---~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~ 124 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVAK---KSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAE 124 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3555556666556666655555543332221 123345666666777777777765333 33333445
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 610 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 610 l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
|...+...+..+..|...|+...+....|.
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777776666665
No 241
>PF13245 AAA_19: Part of AAA domain
Probab=84.38 E-value=0.55 Score=41.38 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHhhcCCCccEEEecccCCCccccc
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344455 3333445899999999998
No 242
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.27 E-value=40 Score=40.62 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 509 SMDKELNELNRRLEEKESEMKLVGGS---DTAALKQHFGKKIAELEDEKRTVQKERDH 563 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~~~---e~~~lk~~~e~ki~eLe~ei~~l~~e~~~ 563 (1044)
-|+++..+-++.+..-|.+|+.+.+. ++...+-+|+.+++.-..++..|.+.+..
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~e 249 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSE 249 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhh
Confidence 33444444444444444444433321 33344556666666555555555544443
No 243
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.92 E-value=52 Score=38.31 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001617 538 ALKQHFGKKIAELEDEKRTVQK 559 (1044)
Q Consensus 538 ~lk~~~e~ki~eLe~ei~~l~~ 559 (1044)
.+-.+++.+.+-.+..+.++.+
T Consensus 325 ll~sqleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 3456777777777766665555
No 244
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=83.45 E-value=1.1e+02 Score=36.63 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 001617 509 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 588 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~ 588 (1044)
++..+...+..++...-+++..-......-++..+++.+..||..+...+..+-.....+..- -...=.++..-+++
T Consensus 164 k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreE---lE~rW~~lq~l~Ee 240 (531)
T PF15450_consen 164 KVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREE---LESRWQKLQELTEE 240 (531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344566666666666666665533333455666777777788887777766665544433221 02233456677788
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQIL-DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKV 636 (1044)
Q Consensus 589 kl~eLe~ql~-~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~ 636 (1044)
++.+|..++. -+...+.+-.++.....++.+++..|+.-++.-..+-.
T Consensus 241 ~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~ 289 (531)
T PF15450_consen 241 RLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLN 289 (531)
T ss_pred HHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877 45555555566777777777777777766555444433
No 245
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.36 E-value=16 Score=38.43 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 546 KIAELEDEKRTVQKERDHLL 565 (1044)
Q Consensus 546 ki~eLe~ei~~l~~e~~~L~ 565 (1044)
.+..++..+..+++|+..+.
T Consensus 68 ~~~~le~~~~~l~~ELael~ 87 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELY 87 (194)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 34445555555555554433
No 246
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=83.33 E-value=1.1e+02 Score=36.59 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001617 898 RRKEVEEELKLREQAVAITLARSASG 923 (1044)
Q Consensus 898 e~~~l~~~l~~~e~~~~~l~~~~~~~ 923 (1044)
+-+....++....++++.++.+..-+
T Consensus 449 E~k~R~~eV~~vRqELa~lLssvQ~~ 474 (531)
T PF15450_consen 449 EGKAREREVGAVRQELATLLSSVQLL 474 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566777777777777666543
No 247
>PRK08181 transposase; Validated
Probab=83.04 E-value=1 Score=49.84 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred cCCCccEEEecccCCCcccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
.|.| |+-||++|+||||.+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCce--EEEEecCCCcHHHHHH
Confidence 4554 8999999999999883
No 248
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.04 E-value=92 Score=35.56 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 617 SDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 617 ~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
++-.++.|..-|.+-+..-.++.
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556655555555544444
No 249
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=1.1e+02 Score=36.46 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 626 DEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 626 ~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
.-|..++.+++.=.+.+.++++.|+.....+-..+.+|+.+....+..+..++.
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778887778888888888888888877888888777777666666555
No 250
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.38 E-value=1.2e+02 Score=36.23 Aligned_cols=93 Identities=9% Similarity=0.102 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---ChhhhHHH
Q 001617 510 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN---SDGQTQKL 582 (1044)
Q Consensus 510 l~~el~eL~~~Le~kE~e~~~l~~~----e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~---~~~~~~kl 582 (1044)
+++++.++..++...|..+..+... +..........++.+++.++...+.++..+.......... ........
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 4556666666777766666665431 1111011223566777777666666655544433322110 00001122
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 583 QDVHAHKLKSLEAQILDLKK 602 (1044)
Q Consensus 583 ~~~~e~kl~eLe~ql~~L~~ 602 (1044)
-..+..++.+++.++.+|..
T Consensus 256 i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23456677777777666653
No 251
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=82.31 E-value=9.1 Score=45.08 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 871 LWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARS 920 (1044)
Q Consensus 871 l~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~ 920 (1044)
|.+.+..+.|+++++..+...++.+...+.+++.++++.+..+..|..+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555544444444555555555555556665555554
No 252
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.28 E-value=26 Score=39.82 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 001617 754 DYEKQSQVRAALAE 767 (1044)
Q Consensus 754 ~~~~~~e~r~kl~~ 767 (1044)
+.+...=+...++.
T Consensus 174 A~Gq~~LLL~~la~ 187 (314)
T PF04111_consen 174 AWGQTALLLQTLAK 187 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 253
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.27 E-value=1.3e+02 Score=36.72 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 001617 760 QVRAALAEELAVLKQVDE 777 (1044)
Q Consensus 760 e~r~kl~~El~~L~~~~e 777 (1044)
-.......|++.|+....
T Consensus 362 ~k~~~ke~E~q~lr~~l~ 379 (511)
T PF09787_consen 362 LKLKEKESEIQKLRNQLS 379 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445667777665433
No 254
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.22 E-value=1.1e+02 Score=35.89 Aligned_cols=28 Identities=25% Similarity=0.144 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 652 WKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 652 ~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
....+..++.+++.+......++..++.
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=81.81 E-value=1.2 Score=48.00 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=28.8
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHH--HhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVD--GLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~--~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+||.|.|..... .-|.-++.-+-+ .|-+=---+|+-||++|+|||++-
T Consensus 116 ~~it~ddViGqEeAK--~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~A 168 (368)
T COG1223 116 SDITLDDVIGQEEAK--RKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ccccHhhhhchHHHH--HHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHH
Confidence 457899998744321 112211111111 122223457899999999999875
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.68 E-value=1 Score=51.46 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=23.0
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+...|+++-.+. -.|+-||++|+||||.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 345777776555 56999999999999987
No 257
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=81.65 E-value=2.5 Score=45.93 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=33.3
Q ss_pred EeCCHHHHHHHHHHhhcccccccCCCCCCCCCceeEEEEEEEEEeccCCCCCCCCCCCCCCCcceEEeEEEEEecCCCcc
Q 001617 195 SVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSER 274 (1044)
Q Consensus 195 ~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~L~~VDLAGsEr 274 (1044)
.+.+++++..++..+... ..++ ...-|.-++.|.|.... .-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~---------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH---------------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC---------------------CCceEEEeCCCccc
Confidence 346788888888765432 2111 12345667778775311 12499999999964
Q ss_pred c
Q 001617 275 A 275 (1044)
Q Consensus 275 ~ 275 (1044)
.
T Consensus 138 ~ 138 (240)
T smart00053 138 V 138 (240)
T ss_pred c
Confidence 3
No 258
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.65 E-value=43 Score=32.32 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 883 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~ 883 (1044)
+++|-.++.++..+..++..+..+...+..+. ..|-...+.......++..++.++.+++.
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei-------------------v~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEI-------------------VKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444444432 22333334444445567777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 884 QLKELVGLLRQSEVRRKEVEEELKLREQ 911 (1044)
Q Consensus 884 ~~~el~~~l~~~e~e~~~l~~~l~~~e~ 911 (1044)
+++.+...+.+-.++.++|...+.+..+
T Consensus 83 ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8887777676666666666655555443
No 259
>PRK10436 hypothetical protein; Provisional
Probab=81.38 E-value=0.77 Score=54.75 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.8
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..++..-++.|+..|+||||||+||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 345566777889999999999999999
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.37 E-value=0.92 Score=51.25 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=31.2
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcC-CCccEEEecccCCCcccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
.+||.+-.... ....++.. +...++....| ....|+-||++|+||||.+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45665432221 24455553 35566655543 33469999999999999983
No 261
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.93 E-value=46 Score=39.29 Aligned_cols=21 Identities=33% Similarity=0.299 Sum_probs=15.4
Q ss_pred cccCCcchhHHhhhcCCCCcce
Q 001617 975 RVPLGQLSMKKLAALGQGGKLW 996 (1044)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~ 996 (1044)
..|... |-|+++.+|+.|.-|
T Consensus 419 s~~~ae-ssk~i~~~~~p~Ss~ 439 (596)
T KOG4360|consen 419 SKQLAE-SSKKIGMPGQPGSSD 439 (596)
T ss_pred cccccc-cccccCCCCCCCCch
Confidence 344444 678899999999877
No 262
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.71 E-value=1.3 Score=52.86 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=32.0
Q ss_pred CceeEeceecCCCCCChHHHHHHhhHhHHHHh--hcC--CCccEEEecccCCCccccc
Q 001617 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 46 ~~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~--l~G--~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..||||..+.. .+ +...|. .+..+.... ..| || .+|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g-~~-N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVT-PE-NDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeC-Cc-HHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHH
Confidence 356999987742 23 454453 344444432 223 44 3778999999999988
No 263
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=50 Score=31.71 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 883 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~ 883 (1044)
..++..|+..+...--++..++.++.+.+.-. +.|..+.++-..-+..=+.+.. . +++.-+.++++
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al---------~Ele~l~eD~~vYk~VG~llvk----~-~k~~~~~eL~e 77 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKAL---------EELEKLDEDAPVYKKVGNLLVK----V-SKEEAVDELEE 77 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhcCCcccHHHHHhhhHHhh----h-hHHHHHHHHHH
Confidence 35667777777777667777777776665422 1233333333211111111111 1 34444777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 884 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 884 ~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
+.+.+..++.-++..-+.+..++++.+.++..++.....
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~ 116 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAAN 116 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 888888888888888888999999999988888776544
No 264
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.57 E-value=0.9 Score=54.71 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.0
Q ss_pred HHHHhhcCCCccEEEecccCCCcccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777889999999999999993
No 265
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.50 E-value=1e+02 Score=34.44 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 616 KSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 616 k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
+.|-.-+.|+..++.+|+.+-++.
T Consensus 164 K~E~~k~Kl~~qLeeEk~RHeqis 187 (561)
T KOG1103|consen 164 KAEIAKDKLEMQLEEEKKRHEQIS 187 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556665555443
No 266
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=80.49 E-value=26 Score=34.56 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 001617 857 LQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDT 936 (1044)
Q Consensus 857 L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~ 936 (1044)
|.+|..+-..+..+=+.-+.+=.|++.++..|.+..+-.+.-+++|.+.++..|-++.+--....+......+.....+.
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~~~~~~~ 85 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLNQSQKKK 85 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 44444444444444444445566888889999999999999999999999999999877666655432211111111111
Q ss_pred CCCCCCCCcccccccccccCccCCCcchhhHHhhhccc
Q 001617 937 SGPPSPMSVPAQKQLKYTPGIANGSIRESAAFINQNRK 974 (1044)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1044)
+........+..+...=.|++.+...+.+-.|+++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~L~~~l~ 123 (134)
T PF08232_consen 86 SSSSDEELEEDSDEESSSPEIDESKWKKSRQLLRKYLQ 123 (134)
T ss_pred cccccccccCCcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 11111111223333333455666667888888887543
No 267
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=80.47 E-value=0.9 Score=52.28 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=23.2
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|.+..++.--.+.|+..|+||||||+||
T Consensus 110 ~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 110 LPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 345566666544677899999999999999
No 268
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.38 E-value=0.65 Score=44.85 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.3
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999987
No 269
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.19 E-value=0.82 Score=56.24 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.1
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455667777889999999999999999
No 270
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.81 E-value=24 Score=37.44 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 001617 588 HKLKSLEAQILDLK 601 (1044)
Q Consensus 588 ~kl~eLe~ql~~L~ 601 (1044)
.++.+++.++++|+
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555666655554
No 271
>PLN02939 transferase, transferring glycosyl groups
Probab=79.60 E-value=2.1e+02 Score=37.42 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh---hhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 806 RISSLENMLSISSNSLVAMASQLSEAEERDR---LFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMK 882 (1044)
Q Consensus 806 qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~---~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k 882 (1044)
.+--|+++..-++..+.+|++.+..+++... .+.-...|..+.+|..--..+....+.++-.-.|-+++..++..++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLE 337 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3344444444444444455444444433211 1222347777777766555444444444443334444444444444
Q ss_pred HHHH
Q 001617 883 EQLK 886 (1044)
Q Consensus 883 ~~~~ 886 (1044)
..+.
T Consensus 338 ~~~~ 341 (977)
T PLN02939 338 ASLK 341 (977)
T ss_pred HHHH
Confidence 4433
No 272
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=79.48 E-value=3.6 Score=41.46 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=18.8
Q ss_pred HHHhhcCCCccEEEecccCCCccccc
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..+..|.| ++..|+||||||+..
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 334456766 788999999999987
No 273
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=79.34 E-value=0.9 Score=50.31 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.1
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
.+.|+..|+||||||++|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 455666799999999999
No 274
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=79.33 E-value=1 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.3
Q ss_pred hhcCCCccEEEecccCCCccccc
Q 001617 77 LFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 77 ~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
++.--++.|+..|+||||||+||
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHH
Confidence 44445788999999999999999
No 275
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=79.24 E-value=1.1 Score=52.00 Aligned_cols=19 Identities=37% Similarity=0.407 Sum_probs=16.8
Q ss_pred CCccEEEecccCCCccccc
Q 001617 81 YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.19 E-value=0.81 Score=48.28 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.0
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
++.|+..|+||||||+|+
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357888999999999998
No 277
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.16 E-value=0.83 Score=43.76 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.9
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578999999999998
No 278
>PRK06921 hypothetical protein; Provisional
Probab=78.62 E-value=1.6 Score=48.27 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=21.2
Q ss_pred hHhHHHHhhc---CCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~---G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+...++++-. +....|+.||++|+||||.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 3445555432 23456889999999999988
No 279
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=78.35 E-value=1.6 Score=48.20 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHhhHhHHHHhhcC-CCccEEEecccCCCccccc
Q 001617 63 SAMFDECIAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 63 ~~vy~~~~~plv~~~l~G-~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.++++.+-.++.+.+.| .---.+-|||.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333444444555555544 4445788999999999998
No 280
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.09 E-value=35 Score=36.22 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001617 588 HKLKSLEAQ 596 (1044)
Q Consensus 588 ~kl~eLe~q 596 (1044)
+++.+++.+
T Consensus 100 ~el~~l~~~ 108 (206)
T PRK10884 100 NQVKTLTDK 108 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 281
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.87 E-value=2.9e+02 Score=38.10 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.6
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
++-.|++|||||.+|
T Consensus 27 ~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVL 41 (1353)
T ss_pred EEEECCCCCcHHHHH
Confidence 345599999999998
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.73 E-value=1.3 Score=46.58 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.2
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|..++.+.+..++..|+.||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 345556555555666899999999998
No 283
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.59 E-value=0.97 Score=43.25 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.3
Q ss_pred ccEEEecccCCCccccc
Q 001617 83 ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm 99 (1044)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 284
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.51 E-value=1e+02 Score=32.64 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q 001617 656 REKELLQLRKEGRRNEYERHKLQ 678 (1044)
Q Consensus 656 ~eke~~qLk~e~~k~e~el~~Lq 678 (1044)
+++.+..|...+.+.+.++..+-
T Consensus 148 LEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 285
>PF13514 AAA_27: AAA domain
Probab=77.39 E-value=2.7e+02 Score=37.54 Aligned_cols=58 Identities=28% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001617 391 EMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVE 450 (1044)
Q Consensus 391 ei~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~ 450 (1044)
.|..+..++++++.++..... .......+...+..++.+...+..++..++.....++
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~--~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEV--RAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666633211 3345566667777777777777777777666655553
No 286
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.21 E-value=23 Score=37.23 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAEER 834 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~ 834 (1044)
..+..++.+++.+.+....+..++.++...
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 445555555555556666666655555444
No 287
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.92 E-value=1e+02 Score=33.38 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 547 IAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 547 i~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
|+++......++.-...+..+++.+
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~ 27 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESL 27 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554
No 288
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.60 E-value=1.8e+02 Score=34.95 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001617 606 NQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQL 638 (1044)
Q Consensus 606 ~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l 638 (1044)
+...+...+.++..+...|-.+|-+.+.++..-
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~ 132 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHSNRRVDE 132 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666667777777776666665543
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.58 E-value=2.2 Score=46.88 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=30.0
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
++|.|..+-.++.. +..+|.. +..++..+-.|. .++-||++|+||||-.
T Consensus 74 k~~~~~d~~~~~~~-~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa 122 (254)
T COG1484 74 KTFEEFDFEFQPGI-DKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLA 122 (254)
T ss_pred CCcccccccCCcch-hHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHH
Confidence 44544443333333 4566654 456665555333 4577999999999987
No 290
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.86 E-value=1.5 Score=48.48 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=20.1
Q ss_pred HHHhhcCCCccEEEecccCCCccccc
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..++..-.+.|+..|+||||||+||
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 34455555566788899999999999
No 291
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=75.65 E-value=1.3e+02 Score=32.99 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHH
Q 001617 550 LEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQD 584 (1044)
Q Consensus 550 Le~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~ 584 (1044)
|......|...-..|.+++..++.++..+++++-.
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLq 45 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQ 45 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHH
Confidence 33333344444444445555554444444444433
No 292
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.54 E-value=2.6 Score=53.08 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred hHHHHhh--cCCCccEEEecccCCCccccc
Q 001617 72 PLVDGLF--QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l--~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++..++ .|-+.+||.||++|+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3344444 344557889999999999998
No 293
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.09 E-value=81 Score=33.04 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001617 649 FRQWKASREKELLQLRKEGRRNEYERHKLQALN 681 (1044)
Q Consensus 649 ~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~ 681 (1044)
+...+....+++.+|+........++..+..+.
T Consensus 150 ~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 150 LKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455677777776666666666555533
No 294
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.09 E-value=1.8e+02 Score=34.25 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 509 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
...+....+..+++.+..+...+... -..-..+..+++.|+...++++.+..++..-...+
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~--i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m 321 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEK--IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAM 321 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445555665655554444333210 01133456667777777777776666655544444
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.05 E-value=1.6 Score=46.46 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.6
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+...+-.|.+.+|+.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444455677889999999999999988
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.93 E-value=1.5e+02 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhcCCCC
Q 001617 754 DYEKQSQVRAALAEELAVLKQVDEFASKGLSP 785 (1044)
Q Consensus 754 ~~~~~~e~r~kl~~El~~L~~~~e~~~~~~~~ 785 (1044)
.+..+.+.+..|..++..|+.+++...+...+
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~~~~~~~ 251 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEERQSEGRR 251 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46777788888888888888777655444443
No 297
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=74.86 E-value=1.7 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.4
Q ss_pred cCC-CccEEEecccCCCccccc
Q 001617 79 QGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
.|. ...+|-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 443 346666999999999987
No 298
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.45 E-value=1.3 Score=47.75 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=13.3
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999999
No 299
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=74.36 E-value=2 Score=52.68 Aligned_cols=38 Identities=37% Similarity=0.649 Sum_probs=24.4
Q ss_pred CccEEEecccCCCccccc-----ccCCC--CCCCcccH----hHHHHHH
Q 001617 82 NATVLAYGQTGSGKTYTM-----GTGFK--DGYQTGII----PLVMNVL 119 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm-----~g~~~--~~~~~Gii----pr~~~~L 119 (1044)
|-.|+.+|+||||||+-+ -.||+ ...++|+| ||=+..|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 446778899999999987 11232 33447777 5555444
No 300
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=74.18 E-value=1.6 Score=48.68 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.9
Q ss_pred hHHHHhhcCCC---ccEEEecccCCCccccc
Q 001617 72 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l~G~n---~ti~aYGqtgSGKT~Tm 99 (1044)
|++...+.|.- -|||+ |+||||||+.|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777888863 47776 99999999988
No 301
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=74.08 E-value=2 Score=44.47 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.8
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
.-.|+-||++|+||||..
T Consensus 47 ~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLA 64 (178)
T ss_dssp --EEEEEESTTSSHHHHH
T ss_pred CeEEEEEhhHhHHHHHHH
Confidence 345899999999999987
No 302
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.84 E-value=2.5e+02 Score=35.46 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHH
Q 001617 655 SREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSF 734 (1044)
Q Consensus 655 ~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~ 734 (1044)
....++.+|+.++..+...+..++..+..+...++..+..+......+..... ...+++
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r---------------------e~qeri 421 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR---------------------EDQERI 421 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hhHHHH
Confidence 34556667777777777776677666666666666665555544433322211 111222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 735 QRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 735 r~~l~~ElE~~~-~l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
..+. .++-.+. ...+....+..-++.......+|..|-.
T Consensus 422 ~~LE-~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 422 SELE-KELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2333333 4677778888888888888888888765
No 303
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=73.70 E-value=1.3 Score=51.79 Aligned_cols=51 Identities=27% Similarity=0.428 Sum_probs=32.2
Q ss_pred eeEeceecCCCCCChHHHHHHhhHhHHH-HhhcC----CCccEEEecccCCCccccc
Q 001617 48 SFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQG----YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 48 ~F~FD~Vf~~~~s~q~~vy~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++||.|.|-. .+-..+.+.+..|+.. .+|.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~-~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLE-EQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 46777776643 2235555555555554 23332 2446899999999999876
No 304
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.49 E-value=1.1e+02 Score=33.59 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001617 633 AQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE-RHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKS 711 (1044)
Q Consensus 633 ~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~e-l~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~ 711 (1044)
++|--.+|-|+.-++....-..+++-||..|+.++.+...+ |..-.-+.++|.++ .|+...|++||+..+.-|
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLAL-----KEARkEIkQLkQvieTmr- 137 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLAL-----KEARKEIKQLKQVIETMR- 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-
Q ss_pred hhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 712 SARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYE 756 (1044)
Q Consensus 712 ~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~ 756 (1044)
.+...+.+-+++++...-=...+++-....++
T Consensus 138 -------------ssL~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 138 -------------SSLAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred -------------hhhchhhhhHHHHHhhhhhhHhHHHHHHHHHH
No 305
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=73.48 E-value=4 Score=46.33 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=34.5
Q ss_pred HhhHhHHHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhh
Q 001617 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEI 141 (1044)
Q Consensus 68 ~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EI 141 (1044)
..+..+|.+.=..-+.||.-||+.|||||+.| ..+...+.......-+.|+++.+..
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l-----------------~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL-----------------NMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHH-----------------HHHHHHHhcccccceeeEEEccccC
Confidence 33344443332356788999999999999987 3444444443223345566666554
No 306
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.46 E-value=1.4 Score=46.53 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.5
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.|+-.|+||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4778899999999999
No 307
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=73.46 E-value=2.7 Score=52.44 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=25.0
Q ss_pred EeceecCCCCCChHHHHHHhhHhHHHHhhcCC-CccEEEecccCCCccccc
Q 001617 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 50 ~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
+||.|.|. +.+ +.-|...+-.|. ...++-||+.|+|||.+.
T Consensus 14 tFdEVIGQ-----e~V----v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 14 DFASLVGQ-----EHV----VRALTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred cHHHHcCc-----HHH----HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 67777762 222 222222233333 456788999999999875
No 308
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.41 E-value=1.2e+02 Score=31.40 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 652 WKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 695 (1044)
Q Consensus 652 ~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~ 695 (1044)
.+..++-++...+.+....+..+..+..+...+.+-++..++.+
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666667777666655555555555544
No 309
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.36 E-value=3.4 Score=47.94 Aligned_cols=52 Identities=27% Similarity=0.469 Sum_probs=31.4
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHH-hhc--CC--CccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDG-LFQ--GY--NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~-~l~--G~--n~ti~aYGqtgSGKT~Tm 99 (1044)
..++||.|.+-. .+-+.+.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 117 p~~~~~di~Gl~-~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 117 PNVSYEDIGGLE-EQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCCHHHhCChH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 356777777643 22344544444444432 222 22 345899999999999987
No 310
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.16 E-value=1.4 Score=42.30 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.7
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|+-||++|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999987
No 311
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=73.04 E-value=2e+02 Score=33.79 Aligned_cols=295 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 615 QKSDEAAKRLQDEIQFIKAQKVQLQ-HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTE 693 (1044)
Q Consensus 615 ~k~Ee~~~~Le~ei~~~K~~k~~l~-rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~e 693 (1044)
..+......+-.+....-+.-..-. ++|..-+.....|+.++++.+..+..+...+......++..++.-..-+.-=.+
T Consensus 20 ~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~e 99 (384)
T PF03148_consen 20 ERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQE 99 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001617 694 EAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV----NVHEVRFDYEKQSQVRAALAEEL 769 (1044)
Q Consensus 694 E~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~----~l~e~~~~~~~~~e~r~kl~~El 769 (1044)
=+...-.|..-++ -.-.-+..+.+...-.-+... .+.++...+..+...+..+...+
T Consensus 100 cL~~R~~R~~~dl-------------------v~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl 160 (384)
T PF03148_consen 100 CLSLREKRPGIDL-------------------VHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDL 160 (384)
T ss_pred HHHHHhCCCCccc-------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HHHh-hhHhhhcCCCCcCccc-cchhhccCChHHHH---------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh-
Q 001617 770 A-VLKQ-VDEFASKGLSPPRGKN-GFARVSSMSPNARM---------ARISSLENMLSISSNSLVAMASQLSEAEERDR- 836 (1044)
Q Consensus 770 ~-~L~~-~~e~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~- 836 (1044)
. +..+ ..+.......+..... ++.-...+.+.... ..|...++++..+..-...+..-+..+.....
T Consensus 161 ~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~ 240 (384)
T PF03148_consen 161 SDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRA 240 (384)
T ss_pred HHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 001617 837 --LFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVG------------------------ 890 (1044)
Q Consensus 837 --~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~------------------------ 890 (1044)
..-..++..+|..+.+|+..|+........ ++.+.+..+..++..+.+..+
T Consensus 241 Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~---ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~ 317 (384)
T PF03148_consen 241 QADAVNAALRKRIHETQEAKNELEWQLKKTLQ---EIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDP 317 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhh
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 001617 891 -------LLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEH 931 (1044)
Q Consensus 891 -------~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~ 931 (1044)
.+.++..-...|..++.+.+..+..|.+....+...+..|.
T Consensus 318 ~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 318 PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=72.74 E-value=1.5 Score=41.69 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.3
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
+|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999986
No 313
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.68 E-value=2.5e+02 Score=34.90 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 848 RSMADAKNLLQYMFNSLADARCQLWEKD 875 (1044)
Q Consensus 848 rsl~eak~~L~~l~~~~~~~r~ql~e~~ 875 (1044)
.++..|+..++.-.+..+..|.+|...+
T Consensus 542 ~QL~~Ar~~lqes~eea~~lR~EL~~QQ 569 (739)
T PF07111_consen 542 EQLEAARKSLQESTEEAAELRRELTQQQ 569 (739)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666655543
No 314
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.55 E-value=1.9 Score=48.56 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.7
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555554 456778899999999998
No 315
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=72.32 E-value=3 Score=47.84 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=37.9
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhc----CCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~----G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+.||++.+.-.. ...+++.++-.++.+++. -.---|+.||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 34677888764433 467788888888888774 23346788999999999875
No 316
>PF12846 AAA_10: AAA-like domain
Probab=72.02 E-value=1.6 Score=48.66 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.9
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556788999999999998
No 317
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.88 E-value=1.6 Score=44.86 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=16.4
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+++....|...+|+.+|.+|+|||+.+
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 34444334666788999999999999987
No 318
>PF13479 AAA_24: AAA domain
Probab=71.77 E-value=1.7 Score=46.40 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.3
Q ss_pred CccEEEecccCCCcccccc
Q 001617 82 NATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm~ 100 (1044)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999873
No 319
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=71.74 E-value=4 Score=48.37 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=28.9
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHH-hhc--CC--CccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDG-LFQ--GY--NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~-~l~--G~--n~ti~aYGqtgSGKT~Tm 99 (1044)
-+|+.|.|-. .+-..+.+.+..|+... ++. |. ...|+-||++|+|||++.
T Consensus 180 ~~~~DIgGl~-~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLE-QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 4566665532 22345555444455432 222 21 235888999999999987
No 320
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=71.59 E-value=6.3 Score=45.29 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=39.1
Q ss_pred ec-eecCCCCCChHHHHHHhhHhHHHHhhcC---CCccEEEecccCCCccccc------c---------------c----
Q 001617 51 FD-HVYGSTGSPSSAMFDECIAPLVDGLFQG---YNATVLAYGQTGSGKTYTM------G---------------T---- 101 (1044)
Q Consensus 51 FD-~Vf~~~~s~q~~vy~~~~~plv~~~l~G---~n~ti~aYGqtgSGKT~Tm------~---------------g---- 101 (1044)
|| .|||. ++.-+.+|.- +.....| .+..|+-.|++|||||+.. . |
T Consensus 49 F~~~~~G~-----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~ 122 (361)
T smart00763 49 FDHDFFGM-----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEE 122 (361)
T ss_pred cchhccCc-----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCC
Confidence 45 78873 3344444433 3333343 3566788999999999765 1 1
Q ss_pred CCCCCCCcccHhHHHHHHHH
Q 001617 102 GFKDGYQTGIIPLVMNVLFS 121 (1044)
Q Consensus 102 ~~~~~~~~Giipr~~~~LF~ 121 (1044)
++-..+-.||+|......|.
T Consensus 123 sp~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 123 SPMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCCccCCcccCCHHHHHHHH
Confidence 11112335888888888883
No 321
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.35 E-value=2.6e+02 Score=34.54 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.9
Q ss_pred EEecccCCCccccc
Q 001617 86 LAYGQTGSGKTYTM 99 (1044)
Q Consensus 86 ~aYGqtgSGKT~Tm 99 (1044)
+-+|+||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 46699999999877
No 322
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=71.31 E-value=2.3 Score=48.67 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=19.7
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..++.+. ..|+..|+||||||++|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34455555443 44677799999999998
No 323
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.23 E-value=89 Score=30.18 Aligned_cols=45 Identities=27% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001617 878 IKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 922 (1044)
Q Consensus 878 l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~ 922 (1044)
..+++++++-+...+..++.....+.+.+++.+..+..++.+...
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556666677666778888888888999999999888888877543
No 324
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.17 E-value=1.6e+02 Score=32.08 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 582 LQDVHAHKLKSLEAQILDLKK-----KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASR 656 (1044)
Q Consensus 582 l~~~~e~kl~eLe~ql~~L~~-----k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~ 656 (1044)
.....+.....|..++.+|.. +.....+-..+..++++-...+...|..++..|..-...+..+++.+..+...-
T Consensus 115 r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~ 194 (247)
T PF06705_consen 115 RPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG 194 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455555555555542 222333455566788888888899999999998888888888888877765444
Q ss_pred H
Q 001617 657 E 657 (1044)
Q Consensus 657 e 657 (1044)
+
T Consensus 195 ~ 195 (247)
T PF06705_consen 195 D 195 (247)
T ss_pred h
Confidence 3
No 325
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.06 E-value=1.2e+02 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 614 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW 652 (1044)
Q Consensus 614 k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~ 652 (1044)
..+++.++..++.++.........+..+++......+..
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555544444444444444444433333
No 326
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.86 E-value=1.6e+02 Score=31.72 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 609 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 609 ~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
.+..-.-..+.++..|+.+|.++++....+.
T Consensus 186 ~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 186 ELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455677778888888888877776654
No 327
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.66 E-value=1.5 Score=51.36 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=35.7
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHH-HhhcC----CCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQG----YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++|+.|.|.+ .+-..+.+.+..|+.. .+|.. ....|+-||++|+|||++.
T Consensus 140 p~v~~~digGl~-~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLD-IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 357888888854 3345666555556654 34442 2457899999999999987
No 328
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.65 E-value=2.1e+02 Score=33.25 Aligned_cols=205 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhhcccccccccCCCCChhhHHHHH
Q 001617 420 VLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAK 499 (1044)
Q Consensus 420 ~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~eLe~~L~~~~~~~~~~~e~~~~~~~e~~e~~~ 499 (1044)
.+..++..|+....+|...-....++...+..... .|......|++.+. +..-.
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnl------qLvhR~h~LEEq~r--------------------eqElr 272 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENL------QLVHRYHMLEEQRR--------------------EQELR 272 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHH------HHHHHHHHHHHHHH--------------------hhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh
Q 001617 500 EWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQT 579 (1044)
Q Consensus 500 e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~ 579 (1044)
-.+......+...++.-...+-+..+.+.-.+. -++++....+|...+..|....++|-.+...+
T Consensus 273 aeE~l~Ee~rrhrEil~k~eReasle~Enlqmr-------~qqleeentelRs~~arlksl~dklaee~qr~-------- 337 (502)
T KOG0982|consen 273 AEESLSEEERRHREILIKKEREASLEKENLQMR-------DQQLEEENTELRSLIARLKSLADKLAEEDQRS-------- 337 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001617 580 QKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASRE-- 657 (1044)
Q Consensus 580 ~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~e-- 657 (1044)
...|..+..++.+.++....+...+.. .++.|..-..|+..+..++...|..+..++
T Consensus 338 -------sd~LE~lrlql~~eq~l~~rm~d~Lrr--------------fq~ekeatqELieelrkelehlr~~kl~~a~p 396 (502)
T KOG0982|consen 338 -------SDLLEALRLQLICEQKLRVRMNDILRR--------------FQEEKEATQELIEELRKELEHLRRRKLVLANP 396 (502)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred ------HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001617 658 ------KELLQLRKEGRRNEYERHKLQALNQRQKL 686 (1044)
Q Consensus 658 ------ke~~qLk~e~~k~e~el~~Lq~~~e~q~~ 686 (1044)
.-...|..+.+++...-..|..+.+...+
T Consensus 397 ~rgrsSaRe~eleqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 397 VRGRSSAREIELEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred ccCchhHHHHHHHHHHHHhccccchhhhhhhhhhh
No 329
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.41 E-value=3.2e+02 Score=35.12 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001617 540 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK 601 (1044)
Q Consensus 540 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~ 601 (1044)
...++.++.+++.++.+.+.++.....+..-... ....+ .+++|.+++.++...+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~----~~~~~---~~~~L~~l~~ql~~a~ 250 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG----NNATL---ATQQLAELNTELSRAR 250 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc----CCccc---hHHHHHHHHHHHHHHH
Confidence 3455666777777777666666665544333211 11111 1346666666666544
No 330
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.37 E-value=2.9e+02 Score=34.68 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 860 MFNSLADARCQLWEKDIEIKEMKEQLKELVGL 891 (1044)
Q Consensus 860 l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~ 891 (1044)
.-..+..++.++...+..|.+.+.++.+....
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666666666555333
No 331
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=70.35 E-value=4.6 Score=43.77 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=30.9
Q ss_pred eeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCc-cEEEecccCCCccccc
Q 001617 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNA-TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 48 ~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~-ti~aYGqtgSGKT~Tm 99 (1044)
...+|...+-+ .+...+.+. ...++.|..+ .|+.||..|+|||.++
T Consensus 23 ~~~l~~L~Gie-~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIE-RQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHH-HHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 45677777643 333333333 3567788865 4778999999999887
No 332
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=69.99 E-value=1.4e+02 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 594 EAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 594 e~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
..++..|..-+.+..+|.....-.|.+++.|+..+..+..+|--++
T Consensus 116 ~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQ 161 (178)
T PF14073_consen 116 QAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQ 161 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566667777777888889999998888887776555
No 333
>PRK09183 transposase/IS protein; Provisional
Probab=69.76 E-value=2.8 Score=46.25 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.6
Q ss_pred cCCCccEEEecccCCCccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4544 668999999999988
No 334
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=69.74 E-value=2.4 Score=48.25 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=19.7
Q ss_pred hHHHHhhcCCCccEEEecccCCCccccc
Q 001617 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++..++.+. ..|+..|.||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4555566553 55667799999999887
No 335
>PF13514 AAA_27: AAA domain
Probab=69.67 E-value=4e+02 Score=35.99 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=12.0
Q ss_pred EecccCCCccccc
Q 001617 87 AYGQTGSGKTYTM 99 (1044)
Q Consensus 87 aYGqtgSGKT~Tm 99 (1044)
.||+.-+|||++|
T Consensus 1 IyGpNEAGKST~l 13 (1111)
T PF13514_consen 1 IYGPNEAGKSTLL 13 (1111)
T ss_pred CCCCCCCCHHHHH
Confidence 3999999999999
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=69.50 E-value=2.9 Score=43.56 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=19.7
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+++..++.. ...|+-.|+||||||.+|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 4455555544 345677799999999987
No 337
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=69.32 E-value=3.3 Score=47.17 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.9
Q ss_pred cCCCccEEEecccCCCccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|....++-||++|+|||+++
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 444345889999999999988
No 338
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.59 E-value=77 Score=29.98 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 883 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~ 883 (1044)
..++..++..+..+..++..++.++.+.+.-.. .+..+.++....+-+=..+.. .. ...-+.++++
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~---------eL~~l~~d~~vyk~VG~vlv~--~~---~~e~~~~l~~ 74 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALE---------ELERLPDDTPVYKSVGNLLVK--TD---KEEAIQELKE 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHcCCCcchhHHHhchhhhe--ec---HHHHHHHHHH
Confidence 345555566666666666666665555544322 122222222221111111111 11 2222455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 884 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITL 917 (1044)
Q Consensus 884 ~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~ 917 (1044)
+++.+...+..++.....+.+++.+.+..+..+.
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5665566666666666667777777666665554
No 339
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.59 E-value=2.6 Score=47.87 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.2
Q ss_pred hHHHHhhcCCCccEEEecccCCCccccc
Q 001617 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++..++.+. ..|+..|.||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4444455432 34778899999999999
No 340
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.37 E-value=2.6 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.9
Q ss_pred HHHhhcCCCccEEEecccCCCccccc
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
|..++..-. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 344443333 4566899999999998
No 341
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.15 E-value=4.2 Score=47.48 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.3
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999999
No 342
>PRK06547 hypothetical protein; Provisional
Probab=67.59 E-value=3.7 Score=42.25 Aligned_cols=29 Identities=41% Similarity=0.422 Sum_probs=20.4
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..+..+.---|+.+|++|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555556666799999999976
No 343
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=67.55 E-value=3 Score=47.15 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=21.5
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..+..+. +.|+..|-||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34455555555 77888999999999997
No 344
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=67.39 E-value=4.2 Score=48.20 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=33.5
Q ss_pred cEEEecccCCCccccc---ccCCCCCCCcccHhHHHHHHHHHHhhh
Q 001617 84 TVLAYGQTGSGKTYTM---GTGFKDGYQTGIIPLVMNVLFSKIETL 126 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm---~g~~~~~~~~Giipr~~~~LF~~i~~~ 126 (1044)
-||..|||+|||||-- ++...++.-.|=+....+++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 333345556788888889999988753
No 345
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.71 E-value=2.2e+02 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 610 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 642 (1044)
Q Consensus 610 l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl 642 (1044)
|......++.+-.++...+.....++.++..++
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~ 227 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLNEEE 227 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445555555554444333
No 346
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=66.65 E-value=2.6 Score=52.40 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=31.1
Q ss_pred eeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 48 ~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.-+||.++|.+ .... .++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45788888632 2222 3455556788888999999999999976
No 347
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.61 E-value=5.2 Score=44.71 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.2
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999999
No 348
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.58 E-value=2.9e+02 Score=33.28 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 579 TQKLQDVHAHKLKSLEAQILDLKKKQ----ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 654 (1044)
Q Consensus 579 ~~kl~~~~e~kl~eLe~ql~~L~~k~----e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~ 654 (1044)
...++.-|..|+.+|-.++.....|- .+...|.+--...+.....+..++.........|+..|...-..|..+..
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs 490 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLS 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45567778888888877755333221 11122222222223334445555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 001617 655 SREKELLQLRKEGRRNEYERHKLQ 678 (1044)
Q Consensus 655 ~~eke~~qLk~e~~k~e~el~~Lq 678 (1044)
.+-..++.|..++.+..-+|..|.
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555554443
No 349
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.26 E-value=1.6e+02 Score=30.24 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 001617 425 IAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAKEWEHT 504 (1044)
Q Consensus 425 i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~eLe~~L~~~~~~~~~~~e~~~~~~~e~~e~~~e~e~~ 504 (1044)
+.....+..++...+..++..++.+...+. ..+++-+.|. ....
T Consensus 1 m~~k~~~i~~~Rl~~~~lk~~l~k~~~ql~----------~ke~lge~L~-----------------------~iDF--- 44 (177)
T PF13870_consen 1 MRQKRNEISKLRLKNITLKHQLAKLEEQLR----------QKEELGEGLH-----------------------LIDF--- 44 (177)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhcCccc-----------------------HHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHH
Q 001617 505 LLQNSMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKL 582 (1044)
Q Consensus 505 ~~q~~l~~el~eL~~~Le~kE~e~~~l~~~--e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl 582 (1044)
.++.-+...|...|+++..++..+... ..-..-+++-.++..+..+...+..++......+..+ +.....+
T Consensus 45 ---eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~----r~~l~~~ 117 (177)
T PF13870_consen 45 ---EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKL----REELYRV 117 (177)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHH---HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001617 583 QDV---HAHKLKSLEAQIL---------DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQF 630 (1044)
Q Consensus 583 ~~~---~e~kl~eLe~ql~---------~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~ 630 (1044)
+.+ +......|..+.. |+....+....+.+....++..+..++..|.+
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 350
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.17 E-value=4.1 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred HHhhcCCCccEEEecccCCCccccc
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+......++.+|++|||||+++
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3334444667888999999999987
No 351
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=65.36 E-value=1.9e+02 Score=30.57 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKKKQEN 606 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~k~e~ 606 (1044)
++++..|+.++..|+.....
T Consensus 86 rekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 86 REKLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHh
Confidence 34555566665555544333
No 352
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.33 E-value=2.1e+02 Score=31.04 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001617 634 QKVQLQHRIKQ 644 (1044)
Q Consensus 634 ~k~~l~rkl~~ 644 (1044)
.+++..+.+..
T Consensus 50 ~h~eeLrqI~~ 60 (230)
T PF10146_consen 50 AHVEELRQINQ 60 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 353
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=65.18 E-value=4.4 Score=45.65 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.2
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999987
No 354
>PHA00729 NTP-binding motif containing protein
Probab=65.06 E-value=4.4 Score=43.49 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.1
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..+..|--..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44555555433357999999999999976
No 355
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=64.90 E-value=4 Score=43.21 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=14.1
Q ss_pred CCccEEEecccCCCccccc
Q 001617 81 YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 81 ~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+-.|++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5567999999999999976
No 356
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.58 E-value=2.8 Score=48.09 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=19.3
Q ss_pred HhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++..++.+ ...|+..|+||||||++|
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHH
Confidence 3444444432 344677899999999998
No 357
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.49 E-value=2.9e+02 Score=32.42 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 637 QLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRL 702 (1044)
Q Consensus 637 ~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~L 702 (1044)
+..+.|..++..|-.....++.....+..++.+.+.-+..++.........+...++.+...+..|
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777777777777777777888888888888888888877777777777777777776655
No 358
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.44 E-value=3.1 Score=46.30 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.2
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
.+.|+..||||||||+.-
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 467899999999999854
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.29 E-value=3.6 Score=48.69 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..-+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333334555557788999999999887
No 360
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=64.29 E-value=3.1 Score=46.56 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.1
Q ss_pred CCCccEEEecccCCCccccc
Q 001617 80 GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 80 G~n~ti~aYGqtgSGKT~Tm 99 (1044)
-.++.++..|..|||||+||
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHH
Confidence 37788888899999999999
No 361
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=64.16 E-value=10 Score=46.33 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.6
Q ss_pred cCCCcEEEcCceEEEeCCHHHHHHHHHHhhccc
Q 001617 181 TSNGVITLAGSTEVSVSSLKEMAACLEQGSLSR 213 (1044)
Q Consensus 181 ~~~~~~~v~gl~e~~V~s~~e~~~~l~~g~~~R 213 (1044)
..+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 321 A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 345677888888877777777788887765544
No 362
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.12 E-value=3.7e+02 Score=33.61 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQY 859 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~ 859 (1044)
.+.++-|...+..+..+.......+.++.... ..+|+.+.+=.|.+....+
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~-----~~LWn~l~ts~Ee~~~f~~ 275 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKL-----LELWNLLDTSDEERQRFVH 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccCCHHHHHHHcc
Confidence 45666677777777666666666777777765 4679998888777776543
No 363
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.08 E-value=1.3e+02 Score=28.28 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001617 542 HFGKKIAELEDEKRTVQKERDH 563 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~ 563 (1044)
.++..-.+++..+..|+.+++.
T Consensus 6 ~l~as~~el~n~La~Le~slE~ 27 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLED 27 (107)
T ss_dssp --------HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 364
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=64.02 E-value=2.5 Score=39.69 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 365
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=64.00 E-value=3 Score=40.87 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|+.+|++|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999976
No 366
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.61 E-value=95 Score=37.77 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=4.2
Q ss_pred ccCCCc
Q 001617 353 CISPAD 358 (1044)
Q Consensus 353 ~vsp~~ 358 (1044)
-|+|.+
T Consensus 296 DVtp~P 301 (652)
T COG2433 296 DVTPAP 301 (652)
T ss_pred cCCCCh
Confidence 477776
No 367
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=63.48 E-value=3 Score=42.94 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.9
Q ss_pred ccEEEecccCCCccccc
Q 001617 83 ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm 99 (1044)
+.++-+||||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 368
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=63.48 E-value=3.6 Score=47.22 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=29.8
Q ss_pred EeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCcccc
Q 001617 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYT 98 (1044)
Q Consensus 50 ~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~T 98 (1044)
+||.|+| |+.+... ..|+-.-+-.|.-...+-|||.|+|||+.
T Consensus 22 ~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 5676775 3444433 34555555577777889999999999976
No 369
>PRK13764 ATPase; Provisional
Probab=63.34 E-value=3.7 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.4
Q ss_pred HhhcCCCccEEEecccCCCccccc
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 76 ~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344455899999999999998
No 370
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=63.05 E-value=8.1 Score=48.99 Aligned_cols=58 Identities=29% Similarity=0.439 Sum_probs=36.9
Q ss_pred HHHhhcCCCccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhhhH
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEE 145 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~ 145 (1044)
+..+.+|.|+.|+| |||||||-+- ++| ++..|+..-.....+.-+.|+||=+--.|..
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA-----------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA-----------FLP-VINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH-----------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 34557999998876 9999999875 222 4555554421112234677888877665443
No 371
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.94 E-value=5.8 Score=46.10 Aligned_cols=35 Identities=20% Similarity=0.465 Sum_probs=26.7
Q ss_pred ChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 61 PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 61 ~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|..+|+.++.-+.. .....+|..|+.|+||||.+
T Consensus 5 eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 378888887655443 44456789999999999987
No 372
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.15 E-value=7.5 Score=44.11 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCCchhc-cCCcce--------EEEeCCCCceeec------CceeEeceecCCCCCChHHHHHHhhHhHH
Q 001617 10 CVKVAVHVRPLIGDERA-QGCKDC--------VAVVPGKPQVQIG------THSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1044)
Q Consensus 10 ~v~V~vRvRP~~~~E~~-~~~~~~--------v~~~~~~~~v~~~------~~~F~FD~Vf~~~~s~q~~vy~~~~~plv 74 (1044)
.-+.+|++.|....+.. .|+..+ +.+.|+.....+. .-.-+|+.|=|- ..|-++|.+.+--|+.
T Consensus 94 g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL-~~Qi~EirE~VELPL~ 172 (406)
T COG1222 94 GPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGL-DEQIQEIREVVELPLK 172 (406)
T ss_pred CCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCH-HHHHHHHHHHhccccc
Confidence 45678888888776642 343322 2333443222211 123456666552 3445778888888887
Q ss_pred HH-hh--cCCC--ccEEEecccCCCccccc
Q 001617 75 DG-LF--QGYN--ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~-~l--~G~n--~ti~aYGqtgSGKT~Tm 99 (1044)
.- +| -|.. -.|+.||+.|+|||-.-
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 53 44 3553 36999999999998643
No 373
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.06 E-value=3.4e+02 Score=32.50 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 001617 509 SMDKELNELNRRLEEKESEMKLVG 532 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~ 532 (1044)
.++..+..+..++..++.++..+.
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~~~ 124 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQSIE 124 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444433
No 374
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=61.80 E-value=3.3 Score=40.57 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.9
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|+.+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999977
No 375
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.67 E-value=3.1e+02 Score=31.90 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001617 612 KQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHK 676 (1044)
Q Consensus 612 k~k~k~Ee~~~~Le~ei~~~K~~k~~l~---rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~ 676 (1044)
..+.+.++.+.+++.++++-.++...+. -.++.+.+..+.-.+..|-++..|+++.+.+..+...
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444333 2233445555555566677777777777666666555
No 376
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=61.41 E-value=5.5 Score=40.59 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=16.4
Q ss_pred HhhcCCCccEEEecccCCCccccc
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 76 ~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..+. ..++..|+||||||+++
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHH
Confidence 334442 44567799999999988
No 377
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=61.32 E-value=15 Score=44.79 Aligned_cols=68 Identities=13% Similarity=0.265 Sum_probs=41.1
Q ss_pred eceecCCCCCChHHHHHHhhHhHHHHhh--cCCCccEEEecccCCCccc---------------cccc----CCCCCCCc
Q 001617 51 FDHVYGSTGSPSSAMFDECIAPLVDGLF--QGYNATVLAYGQTGSGKTY---------------TMGT----GFKDGYQT 109 (1044)
Q Consensus 51 FD~Vf~~~~s~q~~vy~~~~~plv~~~l--~G~n~ti~aYGqtgSGKT~---------------Tm~g----~~~~~~~~ 109 (1044)
|+.+|| .+++-+.++.++...+. ..-...++-.||+|+|||. ++-| ++-..+-.
T Consensus 75 F~d~yG-----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYG-----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccC-----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 677776 34555666655544332 4445678888999999995 4433 22223345
Q ss_pred ccH-hHHHHHHHHHH
Q 001617 110 GII-PLVMNVLFSKI 123 (1044)
Q Consensus 110 Gii-pr~~~~LF~~i 123 (1044)
|++ |.-...+|...
T Consensus 150 ~L~p~~~~~~~le~~ 164 (644)
T PRK15455 150 GLFDPDEDGPILEEE 164 (644)
T ss_pred CCCChhhhHHHHHHH
Confidence 888 55566666443
No 378
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.19 E-value=2.7e+02 Score=30.94 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhhHHHH
Q 001617 807 ISSLENMLSISSNSLVAM 824 (1044)
Q Consensus 807 i~eLe~~~~~~~~~~~~l 824 (1044)
....+.-+..+.+.++.|
T Consensus 254 ~~~f~~~v~lLn~nI~~L 271 (302)
T PF10186_consen 254 RQRFEYAVFLLNKNIAQL 271 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666665554
No 379
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.03 E-value=5.7 Score=44.98 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=21.1
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.+++..++.+. .+|+-.|+||||||++|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 455666666555 35566699999999987
No 380
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=60.93 E-value=3.3 Score=43.65 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.8
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
-++.+|.||||||+++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999998
No 381
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=60.80 E-value=3.7 Score=39.19 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.4
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678899999999976
No 382
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.77 E-value=5.3 Score=50.51 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.3
Q ss_pred cCCCccEEEecccCCCccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 454557888999999999987
No 383
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.75 E-value=1.2e+02 Score=26.67 Aligned_cols=71 Identities=30% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001617 542 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAA 621 (1044)
Q Consensus 542 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~ 621 (1044)
.++++|++=..+|..|..|.+.|....-.. .....+++. .+.+++.++.+|+.+.+. .+..+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~----~~~IKKLr~----~~~e~e~~~~~l~~~~~~----------~e~~~ 63 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKL----NNTIKKLRA----KIKELEKQIKELKKKLEE----------LEKEL 63 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHH----HHHHHHHHHHHHHHHHHH----------HHHHH
Q ss_pred HHHHHHHHH
Q 001617 622 KRLQDEIQF 630 (1044)
Q Consensus 622 ~~Le~ei~~ 630 (1044)
..|+..+..
T Consensus 64 ~~l~~~l~~ 72 (74)
T PF12329_consen 64 ESLEERLKR 72 (74)
T ss_pred HHHHHHhhc
No 384
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.44 E-value=3.9e+02 Score=32.63 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 600 LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 600 L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+...+.....+. +....+.-........+.+..-......++.+++..+.....+|..+.+-...+.+....+.+.+.
T Consensus 27 l~~Ae~eAe~i~--keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~ 104 (514)
T TIGR03319 27 LGSAEELAKRII--EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEE 104 (514)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 680 LNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQS 759 (1044)
Q Consensus 680 ~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~ 759 (1044)
.++.+...|..+.+++....+++.+....+. .+||....+...+..-.-+.
T Consensus 105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~-----------------------------~~le~~a~lt~~eak~~l~~ 155 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQR-----------------------------EELERISGLTQEEAKEILLE 155 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHhhhc
Q 001617 760 QVRAALAEELAVLKQVDEFASK 781 (1044)
Q Consensus 760 e~r~kl~~El~~L~~~~e~~~~ 781 (1044)
.....+..+...+-++.+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T TIGR03319 156 EVEEEARHEAAKLIKEIEEEAK 177 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 385
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=60.38 E-value=1.3e+02 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 001617 610 LLKQKQKSDEAAKRLQDEIQ 629 (1044)
Q Consensus 610 l~k~k~k~Ee~~~~Le~ei~ 629 (1044)
..++|.+.|+.|.+|..+|+
T Consensus 55 h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 55 HRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 386
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=60.23 E-value=3.2 Score=47.61 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=29.9
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..|.|+.|-| |+++- .-++..+.+..-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivG-----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVG-----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhC-----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 3699999987 33333 33333444333356889999999999988
No 387
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=60.16 E-value=15 Score=47.69 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=20.5
Q ss_pred HhHHHHhhcCCC------ccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGYN------ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~n------~ti~aYGqtgSGKT~Tm 99 (1044)
...|..+..|.+ ++++-+|+||+|||++.
T Consensus 579 ~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 579 AERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred HHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 333444445554 46889999999999976
No 388
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.07 E-value=3.4e+02 Score=31.80 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 001617 389 STEMLKMRQQLEFLQAELCA 408 (1044)
Q Consensus 389 ~~ei~kLr~qi~~L~~eL~~ 408 (1044)
...+.+|+.++++|.+++..
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEK 112 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999888854
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.85 E-value=3.9 Score=47.34 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=16.0
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457788999999999998
No 390
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=59.82 E-value=6.7 Score=45.46 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.9
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 566777899999999999
No 391
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.82 E-value=17 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=19.4
Q ss_pred CCCcccHhHHHHHHHHHHhhhcc
Q 001617 106 GYQTGIIPLVMNVLFSKIETLKD 128 (1044)
Q Consensus 106 ~~~~Giipr~~~~LF~~i~~~~~ 128 (1044)
++.-|++-|++..|...++.+.+
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 34569999999999999988765
No 392
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=59.75 E-value=5.4 Score=48.36 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=22.5
Q ss_pred hHhHHHHhhcCCC--ccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n--~ti~aYGqtgSGKT~Tm 99 (1044)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4555666665553 46788999999999998
No 393
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=59.35 E-value=8.2 Score=41.35 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=27.7
Q ss_pred EeceecCCCCCChHHHHHHhhHhHHHHhhc-C-CCccEEEecccCCCccccc
Q 001617 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQ-G-YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 50 ~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~-G-~n~ti~aYGqtgSGKT~Tm 99 (1044)
+||.+.| |+.+-.. ...++..+.. | .-..++-|||+|.|||+.-
T Consensus 22 ~L~efiG-----Q~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 22 SLDEFIG-----QEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp SCCCS-S------HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred CHHHccC-----cHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 6677665 4556544 5677777653 2 2345788999999998754
No 394
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=59.14 E-value=1.7e+02 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001617 597 ILDLKKKQENQVQLLKQKQKSDEAAKRLQDEI 628 (1044)
Q Consensus 597 l~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei 628 (1044)
+..++..++..+.+.-.|.+++..++..+.-+
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al 43 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKAL 43 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555444444333
No 395
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.82 E-value=2.8e+02 Score=30.50 Aligned_cols=252 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred ccccc-ccccCCCcccHHHHHHHH-HHHHHhhccccccccccCcccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001617 346 ILKFD-LSCISPADINAEETLNTL-KYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKE 423 (1044)
Q Consensus 346 ~~~~~-~~~vsp~~~~~~eTl~TL-~~a~ra~~i~~kp~vn~d~~~~ei~kLr~qi~~L~~eL~~~~~~~~~~e~~~L~e 423 (1044)
+..+. ++.+.|.+..+.-++.-+ .+-..-..-.+.+..+.++...++..|..++..|..+... .......+..
T Consensus 6 l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~-----~~~~~~~l~~ 80 (264)
T PF06008_consen 6 LQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATK-----VSRKAQQLNN 80 (264)
T ss_pred HhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhhcccccccccCCCCChhhHHHHHHH--
Q 001617 424 RIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAKEW-- 501 (1044)
Q Consensus 424 ~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~eLe~~L~~~~~~~~~~~e~~~~~~~e~~e~~~e~-- 501 (1044)
.....-..-..|...+..+...+..+......... ........++...+. +++..-.+.
T Consensus 81 ~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~------------------ea~~mL~emr~ 141 (264)
T PF06008_consen 81 NTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALA------------------EAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHH------------------HHHHHHHHHHh
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Q 001617 502 -EHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 580 (1044)
Q Consensus 502 -e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~ 580 (1044)
.+.........|+.+-..-|......+.... .+...+.......+.++..++.++.+-++. ....-..+.
T Consensus 142 r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~-~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e--------A~~~~~ea~ 212 (264)
T PF06008_consen 142 RDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQ-QENESLAEAIRDDLNDYNAKLQDLRDLLNE--------AQNKTREAE 212 (264)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001617 581 KLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQF 630 (1044)
Q Consensus 581 kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~ 630 (1044)
.+-..-+..+.+++.+..+++..+.....+...=..+=.....+=..++.
T Consensus 213 ~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~~~~ 262 (264)
T PF06008_consen 213 DLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQEMQD 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 396
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=58.73 E-value=6.4 Score=41.19 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=17.5
Q ss_pred HHhhcCCCccEEEecccCCCccccc
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455777 577899999999874
No 397
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.55 E-value=3.5e+02 Score=31.51 Aligned_cols=13 Identities=54% Similarity=1.124 Sum_probs=8.6
Q ss_pred HHHHHHHH--HHHHH
Q 001617 732 KSFQRWLD--HELEV 744 (1044)
Q Consensus 732 ~~~r~~l~--~ElE~ 744 (1044)
..++.||. +|+|+
T Consensus 335 ~aLQ~wLq~T~E~E~ 349 (575)
T KOG4403|consen 335 LALQKWLQLTHEVEV 349 (575)
T ss_pred HHHHHHHHHHHHHHH
Confidence 45889988 44444
No 398
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.29 E-value=1.6e+02 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001617 805 ARISSLENMLSISSNSLVAMASQLSEAE 832 (1044)
Q Consensus 805 ~qi~eLe~~~~~~~~~~~~l~~~l~e~e 832 (1044)
.++..++..+..+..++..+..++.+.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 399
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.25 E-value=1.7e+02 Score=31.96 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=8.5
Q ss_pred CCc-ceeeecccccc
Q 001617 992 GGK-LWRWKRSHHQW 1005 (1044)
Q Consensus 992 ~~~-~~~~~~~~~~~ 1005 (1044)
+|+ .|.|.+...+|
T Consensus 200 Dg~~~g~~~~~~~~W 214 (251)
T PF11932_consen 200 DGSQAGVWDPATGQW 214 (251)
T ss_pred CccceeeecCCCCCC
Confidence 344 67777776654
No 400
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.22 E-value=4.8 Score=44.40 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.4
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 401
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=58.13 E-value=4.4 Score=43.46 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.6
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.|.-.|++|||||+.|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999987
No 402
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.69 E-value=2.9e+02 Score=30.21 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 001617 612 KQKQKSDEAAKRLQDEIQF 630 (1044)
Q Consensus 612 k~k~k~Ee~~~~Le~ei~~ 630 (1044)
..+..+...+..+..+++.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~ 67 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIEN 67 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 403
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.31 E-value=1.4e+02 Score=32.79 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 578 QTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 642 (1044)
Q Consensus 578 ~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl 642 (1044)
...+.|++++.|..+||.++..+ .+++..|..+|..+++--++|-.|+
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~-----------------~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQ-----------------QQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888883222 2234455555555555555554443
No 404
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.31 E-value=4.6e+02 Score=32.47 Aligned_cols=150 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKR-TVQKERDHLLTEIENLASNSDGQTQKLQDVH 586 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~-~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~ 586 (1044)
......+..|..+|.........-. ...++.+++.-+..+..+.. .++..+.++...+..- -......++..|
T Consensus 254 ~~a~~~i~~L~~~l~~l~~~~~~~l---~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e---~~~~~~~l~~~~ 327 (582)
T PF09731_consen 254 AHAKERIDALQKELAELKEEEEEEL---ERALEEQREELLSKLREELEQELEEKRAELEEELREE---FEREREELEEKY 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLK-SLEAQILDLKKKQENQVQLLKQKQKSDEA-AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 664 (1044)
Q Consensus 587 e~kl~-eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~-~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk 664 (1044)
+.+|+ +|+.+-..+..+-.. .+..+...+... .+.+...|..++..+..-...|...++.+......+.....+-.
T Consensus 328 ~~~L~~eL~~~~~~~~~~l~~--~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 328 EEELRQELKRQEEAHEEHLKN--ELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 001617 665 K 665 (1044)
Q Consensus 665 ~ 665 (1044)
+
T Consensus 406 ~ 406 (582)
T PF09731_consen 406 R 406 (582)
T ss_pred H
No 405
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=57.28 E-value=5.3e+02 Score=33.14 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001617 592 SLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIK-QEAEQFRQWKASREKELLQLRKEGRRN 670 (1044)
Q Consensus 592 eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~-~e~~~~r~~k~~~eke~~qLk~e~~k~ 670 (1044)
++.....+|...++. ++..+.+..-+....+..+ .++.+-..|.+=+. .+..+++..|...|++.-+|++.+.+.
T Consensus 1026 d~~~r~~el~~rq~~--el~~~~~~~~~~e~e~k~~--hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQ--ELLEMRREQYEEEFELKEE--HLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHH
Q 001617 671 EYERHK----LQALNQRQKLV---LQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELE 743 (1044)
Q Consensus 671 e~el~~----Lq~~~e~q~~v---lkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE 743 (1044)
..+-.+ .....+++..+ -..-+++....++||.+..+++. -+....-++
T Consensus 1102 r~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~------------------------e~L~k~~~~ 1157 (1189)
T KOG1265|consen 1102 RMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQ------------------------EQLVKKHLE 1157 (1189)
T ss_pred HHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001617 744 VMVNVHEVRFDYEKQSQVR 762 (1044)
Q Consensus 744 ~~~~l~e~~~~~~~~~e~r 762 (1044)
.+..+.+.+.++.+.....
T Consensus 1158 ~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1158 VLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHHhhHHHHHHHHHH
No 406
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=57.27 E-value=20 Score=43.98 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=29.3
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
++||.+++.+. ....+. ..+.. +...+..|+-+|.+||||++.-
T Consensus 193 ~~~~~liG~s~-----~~~~~~-~~~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 193 GKEDGIIGKSP-----AMRQVV-DQARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CccCceEECCH-----HHHHHH-HHHHH-HhCcCCCEEEECCCCccHHHHH
Confidence 68888887432 222222 22222 2467889999999999999865
No 407
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=57.26 E-value=4.6 Score=34.06 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.9
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999877
No 408
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.15 E-value=4.7e+02 Score=32.48 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 828 LSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLAD-----ARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRK 900 (1044)
Q Consensus 828 l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~-----~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~ 900 (1044)
.++..++.-.|.+.-+.+.--+-.+.+..++.+-.+.+. .-.+-...+.++.+++.+.++-...+.++..++-
T Consensus 1041 RSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL~qlQNEKc 1118 (1187)
T KOG0579|consen 1041 RSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIELDQLQNEKC 1118 (1187)
T ss_pred hhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433343333444444444555555444322111 1112333455666666666655555555544443
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.12 E-value=5.1 Score=44.07 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=53.0
Q ss_pred eEeceecCCCCCChHHHHHHhhHhH-HHHhhcCCC---ccEEEecccCCCccccccc---C----CCCCCC-------cc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPL-VDGLFQGYN---ATVLAYGQTGSGKTYTMGT---G----FKDGYQ-------TG 110 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~pl-v~~~l~G~n---~ti~aYGqtgSGKT~Tm~g---~----~~~~~~-------~G 110 (1044)
-.++.|-|-.+. -+.+-+.++-|+ .-++|.|.- ..|+.||+.|+||+|.--. . |-+-+. .|
T Consensus 130 VkWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 456677775544 567777777777 457888775 5799999999999997510 0 001111 36
Q ss_pred cHhHHHHHHHHHHhhhcc
Q 001617 111 IIPLVMNVLFSKIETLKD 128 (1044)
Q Consensus 111 iipr~~~~LF~~i~~~~~ 128 (1044)
=--..+..||......+.
T Consensus 209 ESEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKP 226 (439)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 667888999988776543
No 410
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.11 E-value=4.7e+02 Score=32.48 Aligned_cols=55 Identities=9% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 001617 537 AALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQI 597 (1044)
Q Consensus 537 ~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql 597 (1044)
...+..|+..|..|+.+-.. +++.+......- -++.+++++-+.++.+......|
T Consensus 833 ~~kkr~~d~EmenlErqQkq---~iE~~Eq~h~~r---lR~eakRir~EQekd~~~Fqe~L 887 (1187)
T KOG0579|consen 833 TNKKRTSDLEMENLERQQKQ---EIEDTEQAHEHR---LRNEAKRIRIEQEKDMRAFQERL 887 (1187)
T ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHH
Confidence 34455666666666654322 222222222211 14455566655555555555553
No 411
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=56.84 E-value=1.5e+02 Score=26.90 Aligned_cols=36 Identities=31% Similarity=0.583 Sum_probs=27.9
Q ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 536 TAALK----QHFGKKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 536 ~~~lk----~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
..++| ..|++++.+|+.++..+..|.+.|..++...
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 5678888999999888888888887776664
No 412
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=56.62 E-value=3.8e+02 Score=31.30 Aligned_cols=264 Identities=17% Similarity=0.212 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 001617 640 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAV 719 (1044)
Q Consensus 640 rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~ 719 (1044)
+++.+-+....-|+..+.+++.+|..+...+..+...|+.-++.-..=+.--. +-|..|. +.
T Consensus 73 ~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~-----------eCL~~Re-----kR-- 134 (421)
T KOG2685|consen 73 EKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAE-----------ECLAHRE-----KR-- 134 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-----------HHHHHHh-----hc--
Confidence 56667777788899999999998888887777776666553332221111111 1122111 00
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHhhhcCCCCc
Q 001617 720 TNGNLTNGQSNEKSFQRWLDHELEVMV--------NVHEVRFDYEKQSQVRAALAEELA-VLKQ----VDEFASKGLSPP 786 (1044)
Q Consensus 720 ~~~~~~~~~~~~~~~r~~l~~ElE~~~--------~l~e~~~~~~~~~e~r~kl~~El~-~L~~----~~e~~~~~~~~~ 786 (1044)
..++. .+. .+-..|-.|+|++. .++++..++....+.+..+..++. +..+ .-.+.....++.
T Consensus 135 ~~~dl--v~D---~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~ 209 (421)
T KOG2685|consen 135 QGIDL--VHD---EVETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPN 209 (421)
T ss_pred ccchh--hcc---ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCC
Confidence 00000 111 11223333433322 256666667777777777777765 2222 112222223332
Q ss_pred Cccc-cchhhccC--ChHHH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh---hhcccchhhhhccHHHHHHH
Q 001617 787 RGKN-GFARVSSM--SPNAR----MARISSLENMLSISSNSLVAMASQLSEAEERDR---LFTNRGRWNQLRSMADAKNL 856 (1044)
Q Consensus 787 ~~~~-~~~~~~~l--~~~~~----~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~---~~~~~~~~~~~rsl~eak~~ 856 (1044)
.... +..+++.- +++.- ...+...+++...+-.-...+..-+.++....+ ..-..++=++|+...+|++.
T Consensus 210 I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~k 289 (421)
T KOG2685|consen 210 ISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNK 289 (421)
T ss_pred eeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22232211 11111 245555666665555555555555555544322 12223455679999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHH
Q 001617 857 LQYMFNSLADARCQLWEKDIEIKEMKEQLK-------------------------------ELVGLLRQSEVRRKEVEEE 905 (1044)
Q Consensus 857 L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~-------------------------------el~~~l~~~e~e~~~l~~~ 905 (1044)
|+....-.-+ ++.+.+..|..++..+. .|...+..+..-..-|..+
T Consensus 290 L~~ql~k~le---Ei~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~k 366 (421)
T KOG2685|consen 290 LEWQLAKTLE---EIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEK 366 (421)
T ss_pred HHHHHHHHHH---HHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654421111 22223333333332222 2223344445555557777
Q ss_pred HHHHHHHHHHHHHhhhcccccccc
Q 001617 906 LKLREQAVAITLARSASGNLHNSL 929 (1044)
Q Consensus 906 l~~~e~~~~~l~~~~~~~~~~~~~ 929 (1044)
|.+++..+..|......+.-.+.+
T Consensus 367 L~eA~~~l~~L~~~~~rLe~di~~ 390 (421)
T KOG2685|consen 367 LDEAEDSLKLLVNHRARLERDIAI 390 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666555444333
No 413
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.53 E-value=14 Score=39.81 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=63.7
Q ss_pred eEEEEEeCCCCCchhccCC--------cc-eEEEeCCCCceeec--C----ceeEeceecCCCCCChHHHHHHhhHhHHH
Q 001617 11 VKVAVHVRPLIGDERAQGC--------KD-CVAVVPGKPQVQIG--T----HSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1044)
Q Consensus 11 v~V~vRvRP~~~~E~~~~~--------~~-~v~~~~~~~~v~~~--~----~~F~FD~Vf~~~~s~q~~vy~~~~~plv~ 75 (1044)
-.-+|||-....+|....+ +. .|-+.|++...++. . -..+|-.|=|- +-+-++|-+.+--|+..
T Consensus 99 sny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggl-d~qkqeireavelplt~ 177 (408)
T KOG0727|consen 99 SNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGL-DVQKQEIREAVELPLTH 177 (408)
T ss_pred CceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccc-hhhHHHHHHHHhccchH
Confidence 3458898887777753322 12 23344443322221 1 12344444432 23456676666667766
Q ss_pred Hhh---cCCC--ccEEEecccCCCccccccc-------CC----C---CCCCcccHhHHHHHHHHHHhhh
Q 001617 76 GLF---QGYN--ATVLAYGQTGSGKTYTMGT-------GF----K---DGYQTGIIPLVMNVLFSKIETL 126 (1044)
Q Consensus 76 ~~l---~G~n--~ti~aYGqtgSGKT~Tm~g-------~~----~---~~~~~Giipr~~~~LF~~i~~~ 126 (1044)
.-+ =|.+ -.|+.||+.|+|||...-. .| | -..-.|==||.+.++|......
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 533 2443 3589999999999865411 00 0 0112366799999999877654
No 414
>PTZ00424 helicase 45; Provisional
Probab=56.23 E-value=6.4 Score=46.14 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=19.2
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.+..++.|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456788885 56799999999875
No 415
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=55.94 E-value=5.5 Score=48.30 Aligned_cols=51 Identities=29% Similarity=0.415 Sum_probs=29.7
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHH-hhc--C--CCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDG-LFQ--G--YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~-~l~--G--~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++||.|.+.... ...+. .++..+... .+. | ....|+.||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~-k~~l~-~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEA-KEELM-EIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHH-HHHHH-HHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 35789999875432 23332 233322111 111 2 2336899999999999987
No 416
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.87 E-value=2.9e+02 Score=35.36 Aligned_cols=159 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHhhhcCCCCcCccccchhhccCChHHH
Q 001617 727 GQSNEKSFQRWLDHELEVMVN-VHEVRFDYEKQSQVR--AALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNAR 803 (1044)
Q Consensus 727 ~~~~~~~~r~~l~~ElE~~~~-l~e~~~~~~~~~e~r--~kl~~El~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~ 803 (1044)
+.....+...|+++.+..+.. +.+++.+++.+.... -....+...+
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~------------------------------- 309 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAV------------------------------- 309 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-------------------------------
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 883 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~ 883 (1044)
..++.+|+..+..+....+++.....+-.- .....+.++..++.++.+++.
T Consensus 310 l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP-----------------------------~v~~l~~~~~~L~~~~~~l~~ 360 (726)
T PRK09841 310 LEQIVNVDNQLNELTFREAEISQLYKKDHP-----------------------------TYRALLEKRQTLEQERKRLNK 360 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------------hHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCc
Q 001617 884 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMSV 945 (1044)
Q Consensus 884 ~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1044)
++..+-....++..-..+..-.....+.-+....-...+...+.+-=..-|.-..|..|.+|
T Consensus 361 ~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A~~p~~P~~P 422 (726)
T PRK09841 361 RVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKP 422 (726)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeccCCCCCCCCCCc
No 417
>PLN03025 replication factor C subunit; Provisional
Probab=55.87 E-value=8.4 Score=43.82 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.6
Q ss_pred ccEEEecccCCCccccc
Q 001617 83 ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm 99 (1044)
..++-||++|+|||++.
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34677999999999988
No 418
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.69 E-value=4.3e+02 Score=31.64 Aligned_cols=66 Identities=29% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 637 QLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 637 ~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 710 (1044)
.++++++.-..+.+ ...++++++-+++.+...++.+|.+ +..-+++|+..+.....++.+-|.+-+
T Consensus 202 ~~~KelrdtN~q~~----s~~eel~~kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 202 DCVKELRDTNTQAR----SGQEELQSKTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444333 3444555555555555555555544 333466777777777777777776555
No 419
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.24 E-value=2.7e+02 Score=31.47 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=49.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 847 LRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 919 (1044)
Q Consensus 847 ~rsl~eak~~L~~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~ 919 (1044)
..+|--+|..|.|..+.+-+ .|.+++..+.++.+.+.+....++.+......|..++.+..+++...-.-
T Consensus 100 naQLDNek~~l~yqvd~Lkd---~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKD---KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888776665 77777777777777777766666666666777777777777777554333
No 420
>PRK00106 hypothetical protein; Provisional
Probab=55.10 E-value=4.8e+02 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 670 NEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLE 707 (1044)
Q Consensus 670 ~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le 707 (1044)
.+.++...+..++.+...+.++.+++..........|+
T Consensus 123 rE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 123 KEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455555555555555555554
No 421
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=55.02 E-value=8.7 Score=43.33 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.9
Q ss_pred cCCCccEEEecccCCCccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999887
No 422
>PRK10536 hypothetical protein; Provisional
Probab=54.63 E-value=7.3 Score=42.66 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.9
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
+..|++.|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348999999999999986
No 423
>PHA02244 ATPase-like protein
Probab=54.58 E-value=10 Score=43.74 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=18.6
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+..-+-.|.+ |+-+|+||+|||+..
T Consensus 109 ~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 109 TADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3344433335554 566999999999876
No 424
>PRK14974 cell division protein FtsY; Provisional
Probab=54.10 E-value=13 Score=42.55 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.1
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|...|++|+|||+|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 457889999999999998
No 425
>PRK12704 phosphodiesterase; Provisional
Probab=54.08 E-value=4.9e+02 Score=31.83 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 600 LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 600 L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
+...+.....+. +....+.-........+.+..-.+....++.++...+.....+|..+.+-...+.+....+.+.+.
T Consensus 33 l~~Ae~eAe~I~--keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~ 110 (520)
T PRK12704 33 IKEAEEEAKRIL--EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110 (520)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 680 LNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQS 759 (1044)
Q Consensus 680 ~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~r~~l~~ElE~~~~l~e~~~~~~~~~ 759 (1044)
.++.....|.++.+++....+++.+....+. .+||....+...+..-.-+.
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~-----------------------------~~l~~~a~lt~~ea~~~l~~ 161 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQL-----------------------------QELERISGLTAEEAKEILLE 161 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHhhhc
Q 001617 760 QVRAALAEELAVLKQVDEFASK 781 (1044)
Q Consensus 760 e~r~kl~~El~~L~~~~e~~~~ 781 (1044)
.....+..+...+-++.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 162 KVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 426
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.02 E-value=4.6e+02 Score=31.43 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 544 GKKIAELEDEKRTVQKERDHLLTEIE 569 (1044)
Q Consensus 544 e~ki~eLe~ei~~l~~e~~~L~~el~ 569 (1044)
...+..+..++..++.++..+...+.
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 427
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=53.88 E-value=5.6 Score=43.10 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=11.7
Q ss_pred EecccCCCccccc
Q 001617 87 AYGQTGSGKTYTM 99 (1044)
Q Consensus 87 aYGqtgSGKT~Tm 99 (1044)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3599999999998
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.86 E-value=6.9 Score=43.48 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=18.8
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+++.++.. +..|+.+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444433 556788999999999987
No 429
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=53.79 E-value=17 Score=41.84 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=22.4
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+..++..++.+. +.|+..|+||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 455666666654 67888899999999987
No 430
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=53.61 E-value=6 Score=45.21 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=27.7
Q ss_pred ccEEEecccCCCcccccccCCCCCCCcccHhHHHHHHHHHHhhhccCceEEEEEehhhhhh
Q 001617 83 ATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILK 143 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~ 143 (1044)
+.|+-||.+||||||+. ..+|+..+ .-.|.++++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhcc
Confidence 34689999999999987 45565542 2258888888874
No 431
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=53.54 E-value=8 Score=46.39 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=18.3
Q ss_pred HHhhcCCCccEEEecccCCCccccc
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..+++|.| |++.++||||||.+.
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHHH
Confidence 34568887 688899999999764
No 432
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=53.45 E-value=7.3 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=17.4
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
++..+..|.| |+-||++|+||||+.
T Consensus 187 l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 187 ILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3444445544 556999999999876
No 433
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=53.26 E-value=5.7 Score=46.43 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 434
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=53.16 E-value=8.9 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=20.0
Q ss_pred HhHHHHhhcCCCccEEEecccCCCcccccc
Q 001617 71 APLVDGLFQGYNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 71 ~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
..++..+-.|...++ ...+||||||+||.
T Consensus 423 ~ai~~a~~~g~r~~L-l~maTGSGKT~tai 451 (1123)
T PRK11448 423 QAVEKAIVEGQREIL-LAMATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHHHhccCCeE-EEeCCCCCHHHHHH
Confidence 344455556766544 44899999999983
No 435
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.13 E-value=3.5e+02 Score=31.38 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=5.9
Q ss_pred cccCCCCccc
Q 001617 316 HVPYRDSKLT 325 (1044)
Q Consensus 316 ~iPyRdSkLT 325 (1044)
.+-|=-|||.
T Consensus 86 ~~df~p~kLk 95 (359)
T PF10498_consen 86 PVDFPPSKLK 95 (359)
T ss_pred CCCCChHHhh
Confidence 4556666665
No 436
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.01 E-value=2e+02 Score=27.04 Aligned_cols=28 Identities=29% Similarity=0.257 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001617 804 MARISSLENMLSISSNSLVAMASQLSEA 831 (1044)
Q Consensus 804 ~~qi~eLe~~~~~~~~~~~~l~~~l~e~ 831 (1044)
..++..|+..+....-.+..|..+..++
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L 42 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQL 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 3455555554444433333443333333
No 437
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=52.98 E-value=13 Score=44.05 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.1
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999998
No 438
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=52.96 E-value=5.9 Score=42.47 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.4
Q ss_pred CccEEEecccCCCcccccc
Q 001617 82 NATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm~ 100 (1044)
...++-||++|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4569999999999999883
No 439
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.74 E-value=4.9e+02 Score=31.36 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001617 623 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYER 674 (1044)
Q Consensus 623 ~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el 674 (1044)
.+..++..+......+..++..+-..+.+....++....+|+.+...+..++
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444445555555555555554443
No 440
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.70 E-value=11 Score=42.34 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=22.9
Q ss_pred hHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 45555 455666778899999999999997
No 441
>PRK11519 tyrosine kinase; Provisional
Probab=52.67 E-value=4.3e+02 Score=33.78 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 001617 732 KSFQRWLDHELEVMV-NVHEVRFDYEKQSQV 761 (1044)
Q Consensus 732 ~~~r~~l~~ElE~~~-~l~e~~~~~~~~~e~ 761 (1044)
.+...|+.+.+..+. ++.+++.+++.+...
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779888887777 477777777766443
No 442
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.64 E-value=14 Score=41.33 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.2
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
|-.|+..||+|+|||..+
T Consensus 177 NRliLlhGPPGTGKTSLC 194 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLC 194 (423)
T ss_pred eeEEEEeCCCCCChhHHH
Confidence 445788999999999877
No 443
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=52.34 E-value=6.3 Score=41.44 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.0
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
...||..|+.|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 456888899999999887
No 444
>PRK04195 replication factor C large subunit; Provisional
Probab=52.20 E-value=9.4 Score=46.16 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=22.3
Q ss_pred hHhHHHHhhcCC-CccEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
+...+.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 445555555665 557889999999999987
No 445
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=52.18 E-value=7.2 Score=41.19 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=19.6
Q ss_pred HHhhcCC---CccEEEecccCCCccccc
Q 001617 75 DGLFQGY---NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~~l~G~---n~ti~aYGqtgSGKT~Tm 99 (1044)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455554 678899999999999875
No 446
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=52.15 E-value=6.6 Score=48.04 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=30.5
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.-+||.+++.+. . +..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~-----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE-----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH-----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3467888887431 1 233334456677778899999999999865
No 447
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=52.05 E-value=9.9 Score=47.88 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=21.6
Q ss_pred hhHhHHHHhhc-----CCCccEEEecccCCCcccccc
Q 001617 69 CIAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 100 (1044)
Q Consensus 69 ~~~plv~~~l~-----G~n~ti~aYGqtgSGKT~Tm~ 100 (1044)
++..+++.+.. |.+..|+. -+||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 35666666665 44555555 489999999994
No 448
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=51.96 E-value=4.6e+02 Score=30.88 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001617 586 HAHKLKSLEAQILDLK 601 (1044)
Q Consensus 586 ~e~kl~eLe~ql~~L~ 601 (1044)
-.+-+++|..|+.||.
T Consensus 147 qkeLi~QLk~Ql~dLE 162 (621)
T KOG3759|consen 147 QKELIKQLKEQLEDLE 162 (621)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666777776665
No 449
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=51.96 E-value=4.4e+02 Score=31.29 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 748 VHEVRFDYEKQSQVRAALAEELAVLKQ 774 (1044)
Q Consensus 748 l~e~~~~~~~~~e~r~kl~~El~~L~~ 774 (1044)
+...++-+.++.+...++..=+..+++
T Consensus 294 L~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 294 LKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677777777777766666654
No 450
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.82 E-value=2.8e+02 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001617 627 EIQFIKAQKVQLQHRIKQEAE 647 (1044)
Q Consensus 627 ei~~~K~~k~~l~rkl~~e~~ 647 (1044)
+...+..+..++++.+.+-.+
T Consensus 132 e~~~l~er~~e~l~~~~e~ve 152 (158)
T PF09744_consen 132 EYNRLHERERELLRKLKEHVE 152 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 451
>CHL00176 ftsH cell division protein; Validated
Probab=51.55 E-value=6.7 Score=48.86 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.3
Q ss_pred ccEEEecccCCCccccc
Q 001617 83 ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 83 ~ti~aYGqtgSGKT~Tm 99 (1044)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999987
No 452
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.51 E-value=1.8e+02 Score=30.81 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 605 ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 605 e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
+...++...+..+++..+.|..++..++..-..|.
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 33344555556666666666666666666555444
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=51.38 E-value=12 Score=47.73 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=30.1
Q ss_pred ceeEeceecCCCCCChHHHHHHhhHhHHH-HhhcCC----CccEEEecccCCCccccc
Q 001617 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQGY----NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 47 ~~F~FD~Vf~~~~s~q~~vy~~~~~plv~-~~l~G~----n~ti~aYGqtgSGKT~Tm 99 (1044)
..++||.|-|-.. .-..+.+.+..|+-. .++..+ ...|+-||++|||||+.+
T Consensus 173 ~~~~~~di~G~~~-~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKE-AKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3478888776332 123444433333322 233222 346899999999999876
No 454
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=51.27 E-value=6.2 Score=46.46 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=20.3
Q ss_pred cCCCccEEEecccCCCcccccccCCCCCCCcccHhH
Q 001617 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPL 114 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm~g~~~~~~~~Giipr 114 (1044)
.|.| +|.||+.|||||.+. ..-+||+|-
T Consensus 197 GgHn--Ll~~GpPGtGKTmla------~Rl~~lLPp 224 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLA------SRLPGLLPP 224 (490)
T ss_pred cCCc--EEEecCCCCchHHhh------hhhcccCCC
Confidence 4444 578999999999987 234677753
No 455
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.22 E-value=4.1e+02 Score=30.04 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001617 617 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKL 677 (1044)
Q Consensus 617 ~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~L 677 (1044)
.++....|..|+.++.+-...|-..-+.-...-+.....++.-|..|+...+.+-+|++.|
T Consensus 160 keeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 160 KEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444433333333333333344444444444444444444443
No 456
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.10 E-value=15 Score=35.69 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=18.7
Q ss_pred hHhHHHHhhcCCC---c-cEEEecccCCCccccc
Q 001617 70 IAPLVDGLFQGYN---A-TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 70 ~~plv~~~l~G~n---~-ti~aYGqtgSGKT~Tm 99 (1044)
+...|.+.+...+ . .+--.|+||+||||+-
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH
Confidence 4444555554332 2 3445799999999964
No 457
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.90 E-value=9.2 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.0
Q ss_pred HHHhhcCCCccEEEecccCCCccccc
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 74 v~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
|..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344567876 788999999999874
No 458
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.37 E-value=1.9e+02 Score=25.84 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 001617 554 KRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQIL 598 (1044)
Q Consensus 554 i~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~ 598 (1044)
+...-.|+..+...+-.+ .....++++.|++++..|..+|.
T Consensus 34 i~~Qi~Em~~ir~~v~eL----E~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYEL----EQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444 44566778888888888887754
No 459
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=50.23 E-value=8.9 Score=41.23 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=23.0
Q ss_pred HhHHHHhhcC---CCccEEEecccCCCccccc
Q 001617 71 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G---~n~ti~aYGqtgSGKT~Tm 99 (1044)
-|-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3557777775 3667889999999999876
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=50.10 E-value=11 Score=40.81 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred HhHHHHhhcCC---CccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGY---NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 99 (1044)
-|-+|.++.|- .++++.+|.+|||||+..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 45567777543 778888999999998865
No 461
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.00 E-value=5.7e+02 Score=31.39 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 001617 648 QFRQWKASREKELLQLRKEGRRNEYE---RHKLQALNQRQKLV---LQRKTEEAAMATKRLKELLESRK 710 (1044)
Q Consensus 648 ~~r~~k~~~eke~~qLk~e~~k~e~e---l~~Lq~~~e~q~~v---lkrk~eE~~a~~k~Lke~le~~k 710 (1044)
...+.--.++.-..+|+......+++ +...+.++.....+ |...++++.+...++++++..-.
T Consensus 270 ~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 270 LLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 33333344444445555555555554 44444443333332 44557888888888888887443
No 462
>PRK04328 hypothetical protein; Provisional
Probab=50.00 E-value=10 Score=41.46 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred hHHHHhhcC---CCccEEEecccCCCcccc
Q 001617 72 PLVDGLFQG---YNATVLAYGQTGSGKTYT 98 (1044)
Q Consensus 72 plv~~~l~G---~n~ti~aYGqtgSGKT~T 98 (1044)
|-+|.++.| ..++++.+|++|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 457777866 478899999999999864
No 463
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=49.99 E-value=9.9 Score=40.71 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=22.4
Q ss_pred HhHHHHhhcCC---CccEEEecccCCCccccc
Q 001617 71 APLVDGLFQGY---NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 71 ~plv~~~l~G~---n~ti~aYGqtgSGKT~Tm 99 (1044)
-|-+|.++.|. ...++.||++|||||..+
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 35577778544 557889999999999876
No 464
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.93 E-value=1.8e+02 Score=34.66 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001617 625 QDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 679 (1044)
Q Consensus 625 e~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~~Lq~ 679 (1044)
..+-++++++......++...+...+ .++.++..+|+.+..+....+..|+.
T Consensus 86 ~~eN~~L~~r~~~id~~i~~av~~~~---~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 86 KAENERLQKREQSIDQQIQQAVQSET---QELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444322 33444555555554444444444443
No 465
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.93 E-value=11 Score=45.45 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=26.6
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCC-ccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n-~ti~aYGqtgSGKT~Tm 99 (1044)
-+||.|.|+ +.+ +..+...+-.|.- ..++-||+.|+|||++.
T Consensus 11 ~~~~divGq-----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 11 KTFSEVVGQ-----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCHHHccCc-----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 467888763 222 2333333334433 45789999999999986
No 466
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.78 E-value=3.3e+02 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001617 539 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 571 (1044)
Q Consensus 539 lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 571 (1044)
.......++..|+.++..+...+..+...+...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777666665
No 467
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=49.74 E-value=3.7e+02 Score=29.15 Aligned_cols=196 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhhcccccccccCCCCChhh
Q 001617 415 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREI 494 (1044)
Q Consensus 415 ~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~~~~~~~~~~~l~~k~~eLe~~L~~~~~~~~~~~e~~~~~~~e~ 494 (1044)
.+.+..|+..-..|..+...-.+.-..+--+++.-++... .|.+.|.+|+..+...-. .+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmq------e~~sqi~~lK~qq~Ps~~--------------ql 166 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQ------ECTSQIQYLKQQQQPSVA--------------QL 166 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhCcHHH--------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001617 495 DEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN 574 (1044)
Q Consensus 495 ~e~~~e~e~~~~q~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~ 574 (1044)
...-..=-......+|..++..-...|++...++.... -.=-.+-=+-|-..-+.|..|.++|-+...+-
T Consensus 167 R~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwk-------FTPdS~tGK~LMAKCR~L~qENeElG~q~s~G--- 236 (330)
T KOG2991|consen 167 RSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWK-------FTPDSKTGKMLMAKCRTLQQENEELGHQASEG--- 236 (330)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheee-------ecCCCcchHHHHHHHHHHHHHHHHHHhhhhcc---
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 575 SDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 654 (1044)
Q Consensus 575 ~~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~ 654 (1044)
++.+|+.+|+ +++.... +|.+-...+..-+..|...++.|.....-|+.+|++.-++.+..+.
T Consensus 237 --------------ria~Le~eLA-mQKs~se--Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 237 --------------RIAELEIELA-MQKSQSE--ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred --------------cHHHHHHHHH-HHHhhHH--HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 001617 655 SRE 657 (1044)
Q Consensus 655 ~~e 657 (1044)
.++
T Consensus 300 ~~~ 302 (330)
T KOG2991|consen 300 GLE 302 (330)
T ss_pred HHH
No 468
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=49.70 E-value=29 Score=42.25 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=27.9
Q ss_pred EeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 50 ~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|+.+.+.+.. -..++ ..|.. +...+..|+-+|.+||||++.-
T Consensus 185 ~~~~iig~s~~-~~~~~-----~~i~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPA-MQQLK-----KEIEV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHH-HHHHH-----HHHHH-HhCCCCcEEEECCCCccHHHHH
Confidence 67777763211 12222 22333 4667999999999999999865
No 469
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=49.52 E-value=11 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.5
Q ss_pred hcCCCccEEEecccCCCccccc
Q 001617 78 FQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 78 l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
-.|.|-||+..|.+|||||+|+
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 4789999999999999999997
No 470
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=49.47 E-value=18 Score=46.45 Aligned_cols=42 Identities=36% Similarity=0.471 Sum_probs=26.5
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCC-CccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~-n~ti~aYGqtgSGKT~Tm 99 (1044)
-+||.|++ |+.| +..|...+-.|. +-.+|-||+.|+|||.+.
T Consensus 12 ~~f~eiiG-----qe~v----~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A 54 (824)
T PRK07764 12 ATFAEVIG-----QEHV----TEPLSTALDSGRINHAYLFSGPRGCGKTSSA 54 (824)
T ss_pred CCHHHhcC-----cHHH----HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 36777775 2333 333444444443 456889999999999775
No 471
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.44 E-value=7 Score=38.73 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.4
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999987
No 472
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.43 E-value=80 Score=29.85 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001617 415 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 451 (1044)
Q Consensus 415 ~~e~~~L~e~i~~Le~en~~L~~eL~~~~e~~a~l~~ 451 (1044)
..++..|+..+..|.++|..|..|...+++++.....
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456668888999999999999999998888877654
No 473
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.43 E-value=1.8e+02 Score=25.42 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001617 870 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 919 (1044)
Q Consensus 870 ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~~~~~l~~~ 919 (1044)
.+.-++.++.+++++...+......+..+...|..+...-+..+..|+..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777888888888887777788888888888888888888777764
No 474
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.30 E-value=4e+02 Score=30.77 Aligned_cols=55 Identities=25% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 510 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHL 564 (1044)
Q Consensus 510 l~~el~eL~~~Le~kE~e~~~l~~~----e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L 564 (1044)
+++++.++..++..-|..+..+... +...........+.+|+.++..++.++..+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665532 222222334455666666666666555543
No 475
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=49.29 E-value=7.7 Score=45.85 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.1
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
+--++.+|+||||||.+|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345789999999999877
No 476
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.26 E-value=9.9 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHhhcCCCccEEEecccCCCccccc
Q 001617 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 75 ~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
..++.|.| |++.++||||||.+.
T Consensus 40 p~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 40 PLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHhCCCc--EEEECCCCchHHHHH
Confidence 34578877 567789999999875
No 477
>PF13173 AAA_14: AAA domain
Probab=49.24 E-value=7.7 Score=37.57 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.5
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 478
>PHA03332 membrane glycoprotein; Provisional
Probab=49.13 E-value=6.4e+02 Score=33.02 Aligned_cols=112 Identities=12% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 001617 508 NSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 587 (1044)
Q Consensus 508 ~~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e 587 (1044)
.+|...+..+++.+......+.+++. -+..+-..++++|++-...|..|+++++.= +... +....++...+.
T Consensus 894 a~mksaIg~tNaAV~~lsDai~klGn-ti~kisatl~~nI~avNgRIs~Led~VN~r---~~~v----~~~intLA~ql~ 965 (1328)
T PHA03332 894 AEMASKIGGLNARVDKTSDVITKLGD-TIAKISATLDNNIRAVNGRVSDLEDQVNLR---FLAV----ATNFNTLATQLK 965 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhHHHhcccHHHHHHHHHHH---HHHH----HHHHHHHHHHhh
Confidence 44666777788888777777777662 244556677888888888888888777652 2222 223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001617 588 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDE 627 (1044)
Q Consensus 588 ~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~e 627 (1044)
+...++...|+.-.+...-.++|..+-...-+...+|..+
T Consensus 966 ~~~~~~N~~ie~~~aaalyYQQlnsltnqv~~saskL~~q 1005 (1328)
T PHA03332 966 ELGTTTNERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQ 1005 (1328)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555554444444444444444444444333333333
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=49.07 E-value=15 Score=39.51 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=22.8
Q ss_pred HHHHHHhhHhHHHHhhc-CCCccEEEecccCCCccccc
Q 001617 63 SAMFDECIAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 63 ~~vy~~~~~plv~~~l~-G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+.+|..++.-+...+-. |..-.|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34444444443333332 44556777799999999977
No 480
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.01 E-value=7.3 Score=41.31 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.7
Q ss_pred EEEecccCCCccccc
Q 001617 85 VLAYGQTGSGKTYTM 99 (1044)
Q Consensus 85 i~aYGqtgSGKT~Tm 99 (1044)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 481
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.95 E-value=6.6e+02 Score=31.82 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=9.4
Q ss_pred EEEEEecCCCcc
Q 001617 263 KLHLVDLAGSER 274 (1044)
Q Consensus 263 ~L~~VDLAGsEr 274 (1044)
-|+|||.+|..-
T Consensus 245 IVtLVDTpGA~p 256 (762)
T PLN03229 245 IVTFIDTPGAYA 256 (762)
T ss_pred EEEEEECCCcCC
Confidence 389999999754
No 482
>PRK11519 tyrosine kinase; Provisional
Probab=48.93 E-value=4.4e+02 Score=33.66 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 510 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDH 563 (1044)
Q Consensus 510 l~~el~eL~~~Le~kE~e~~~l~~~----e~~~lk~~~e~ki~eLe~ei~~l~~e~~~ 563 (1044)
+++++.++..+|+..|..++.+... +....-...-..+.+++.++.+++.....
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAE 329 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777666532 22222233334455566655555444443
No 483
>PF05729 NACHT: NACHT domain
Probab=48.75 E-value=7.8 Score=38.65 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.4
Q ss_pred cEEEecccCCCccccc
Q 001617 84 TVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 84 ti~aYGqtgSGKT~Tm 99 (1044)
.|+.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999988
No 484
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.67 E-value=1.1e+02 Score=28.91 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 859 YMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ 911 (1044)
Q Consensus 859 ~l~~~~~~~r~ql~e~~~~l~e~k~~~~el~~~l~~~e~e~~~l~~~l~~~e~ 911 (1044)
.+|+.+.....++..+..++.+++..+.++...-..|..++..|.+.+...++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566666777777777777777777655555566666666665555444
No 485
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=48.43 E-value=3.9e+02 Score=28.97 Aligned_cols=161 Identities=21% Similarity=0.228 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---C-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001617 544 GKKIAELEDEKRTVQKERDHLLTEIENLASN---S-DGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDE 619 (1044)
Q Consensus 544 e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~---~-~~~~~kl~~~~e~kl~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee 619 (1044)
..+..+|+..+...-.++..+..++..+... . ..-..---.+++.+|.....++.+ .+.....+...-.....
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~---~q~~l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQE---LQEQLQQENSQLIEIQT 113 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444444443221 1 111111223345555555555333 33333344444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHH
Q 001617 620 AAKRLQDEIQFIKAQKVQLQHRIK-------QEAEQFRQWKASREKELLQLRKEGRRNEYERH---KLQALNQRQKLVLQ 689 (1044)
Q Consensus 620 ~~~~Le~ei~~~K~~k~~l~rkl~-------~e~~~~r~~k~~~eke~~qLk~e~~k~e~el~---~Lq~~~e~q~~vlk 689 (1044)
........|...+.....+...+. ..+...+.|.... +..-|+.+...++.++. .++..+..+...+.
T Consensus 114 ~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~a--e~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~ 191 (240)
T PF12795_consen 114 RPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQA--ELAALEAQIEMLEQELLSNNNRQELLQLQRDLLK 191 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 555666666666666666666666 3555666666544 44445555555555533 33334444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001617 690 RKTEEAAMATKRLKELLESR 709 (1044)
Q Consensus 690 rk~eE~~a~~k~Lke~le~~ 709 (1044)
.++..+...+.-|++.+-..
T Consensus 192 ~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 192 ARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555433
No 486
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.40 E-value=3.4e+02 Score=31.31 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 001617 894 QSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEH 931 (1044)
Q Consensus 894 ~~e~e~~~l~~~l~~~e~~~~~l~~~~~~~~~~~~~~~ 931 (1044)
....+...|.++.+-.+.....++.....+..+....+
T Consensus 275 ~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~ 312 (362)
T TIGR01010 275 EQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQ 312 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556667888888777777666666655443333333
No 487
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=48.38 E-value=11 Score=42.97 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=18.7
Q ss_pred hHHHHhhcCCCccEEEecccCCCccccc
Q 001617 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 72 plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.++..+.. +.-|+.+|++|+|||...
T Consensus 56 ~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 56 AICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 34444433 456899999999999876
No 488
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=48.29 E-value=13 Score=42.70 Aligned_cols=42 Identities=24% Similarity=0.444 Sum_probs=31.3
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
|.|..|.| |+.+ ..-++-.+++..-+-|+..|.+|+|||..+
T Consensus 1 ~pf~~ivg-----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG-----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc-----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 66777776 3333 455666777777777899999999999987
No 489
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.26 E-value=15 Score=47.69 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=27.7
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCC------ccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYN------ATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n------~ti~aYGqtgSGKT~Tm 99 (1044)
.-+..|+|.+ ..-.. +...|..+..|.+ ++++-+|+||+|||++.
T Consensus 565 ~l~~~viGQ~-----~ai~~-l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQN-----EAVEA-VSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCCH-----HHHHH-HHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 4567788732 22222 3333444444433 57888899999999987
No 490
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=48.24 E-value=11 Score=42.58 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHHhhcCCCccEEEecccCCCccccc
Q 001617 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 73 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
+...-..+-+..++.||..|||||.||
T Consensus 14 l~~~~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 14 LKEADKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred HHHhcccCCceEEEEECCCCCCHHHHH
Confidence 333345667788999999999999999
No 491
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.19 E-value=4.4e+02 Score=29.57 Aligned_cols=120 Identities=25% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 001617 517 LNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQ 596 (1044)
Q Consensus 517 L~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~q 596 (1044)
|..-|..++..-..+. ++++.+.+-+.++.......+.+..+...+ .+.....+..
T Consensus 178 L~~fl~~~~~~~~~il---------q~d~~L~~~ek~~~~~~~k~e~~e~e~~~l---------------~e~~~~~~~~ 233 (297)
T PF02841_consen 178 LQEFLQSKESMENSIL---------QADQQLTEKEKEIEEEQAKAEAAEKEKEKL---------------EEKQKEQEQM 233 (297)
T ss_dssp HHHHHHHCHHHHHHHH---------HH-TTS-HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 597 ILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 664 (1044)
Q Consensus 597 l~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k~~~eke~~qLk 664 (1044)
+.+-....+. ++..++.+++..-..+..+.+.+-..+.+.+.++- .+.|...-..++++|..|+
T Consensus 234 le~~~~~~ee--~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 234 LEQQERSYEE--HIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 492
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.09 E-value=2.6e+02 Score=26.94 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q 001617 591 KSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ------------------HRIKQEAEQFRQW 652 (1044)
Q Consensus 591 ~eLe~ql~~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~------------------rkl~~e~~~~r~~ 652 (1044)
.+++.++..++.-+...+.+...+..++.+....+.-+..+...-.+.. ..+.+.++-....
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ 86 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELR 86 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001617 653 KASREKELLQLRKEGRRNEYERHKLQALN 681 (1044)
Q Consensus 653 k~~~eke~~qLk~e~~k~e~el~~Lq~~~ 681 (1044)
...+++....|++.+...+..+..+...+
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=48.03 E-value=5.5 Score=44.44 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=0.0
Q ss_pred cCCCccEEEecccCCCccccc
Q 001617 79 QGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 79 ~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
.|++-+|+..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
No 494
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.92 E-value=16 Score=42.62 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred ChHHHHHHhhHhHHHHh-----hcCCCccEEEecccCCCccccc
Q 001617 61 PSSAMFDECIAPLVDGL-----FQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 61 ~q~~vy~~~~~plv~~~-----l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
....+...+...+...+ +.+....|+-.|++|+|||+|+
T Consensus 215 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 215 TEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTL 258 (436)
T ss_pred CHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHH
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=47.87 E-value=7.9 Score=40.08 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=0.0
Q ss_pred CccEEEecccCCCccccc
Q 001617 82 NATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 82 n~ti~aYGqtgSGKT~Tm 99 (1044)
++..+-||++|+|||+.|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
No 496
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.85 E-value=16 Score=41.55 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred ChHHHHHHhhHhHHHHhhc----------CCCccEEEecccCCCccccc
Q 001617 61 PSSAMFDECIAPLVDGLFQ----------GYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 61 ~q~~vy~~~~~plv~~~l~----------G~n~ti~aYGqtgSGKT~Tm 99 (1044)
...+....++...+...+. +-...|...|++|+|||+|+
T Consensus 83 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 83 KDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHH
No 497
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=47.83 E-value=13 Score=40.26 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=0.0
Q ss_pred eEeceecCCCCCChHHHHHHhhHhHHHHhhcCCCccEEEecccCCCccccc
Q 001617 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1044)
Q Consensus 49 F~FD~Vf~~~~s~q~~vy~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm 99 (1044)
|.|.++-.+..-=...+-+.|...+...+-.++-+++ +|++|||||.|+
T Consensus 1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~--~GpagtGKteti 49 (231)
T PF12774_consen 1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGAL--SGPAGTGKTETI 49 (231)
T ss_dssp -------S-------HHHHHHHHHHHHHHCTTTEEEE--ESSTTSSHHHHH
T ss_pred CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCC--cCCCCCCchhHH
No 498
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=47.72 E-value=5.5e+02 Score=30.55 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 001617 511 DKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVH 586 (1044)
Q Consensus 511 ~~el~eL~~~Le~kE~e~~~l~~~----e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~ 586 (1044)
+.++.....++..-...+..+... |....-...-.-|..|+.++.+++.++..|..-+.-- .-....++.
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~----sPqV~~l~~-- 321 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQ----NPLIPRLSA-- 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCchhHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 587 AHKLKSLEAQILDLKKKQE----------NQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIK 643 (1044)
Q Consensus 587 e~kl~eLe~ql~~L~~k~e----------~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~ 643 (1044)
++..|+.+|+..+.+-. ...++..+.-..+=+-+.+...+..+.+.|++..|+.+
T Consensus 322 --rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~ 386 (434)
T PRK15178 322 --KIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQ 386 (434)
T ss_pred --HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 499
>PF14992 TMCO5: TMCO5 family
Probab=47.65 E-value=4.4e+02 Score=29.34 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 001617 509 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 588 (1044)
Q Consensus 509 ~l~~el~eL~~~Le~kE~e~~~l~~~e~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~ 588 (1044)
++.+..+.|=..|..+|..++.+. ++...+....++. .+...-+.+.+..+..|..+...+ ++-.+.+.+
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le-~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~L--------E~~ne~l~~ 84 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLE-REITKMDHIADRS-EEEDIISEERETDLQELELETAKL--------EKENEHLSK 84 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHH--------hhhhHhhhh
Q ss_pred HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 589 KLKSLEAQIL---------------DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWK 653 (1044)
Q Consensus 589 kl~eLe~ql~---------------~L~~k~e~~~~l~k~k~k~Ee~~~~Le~ei~~~K~~k~~l~rkl~~e~~~~r~~k 653 (1044)
-+.+|.+++. .+..-+...+.+..-....+.++..+++..+++...-++.-.-++.=-+..++..
T Consensus 85 ~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE 164 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRME 164 (280)
T ss_pred hhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 001617 654 ASREKELLQLRKEGRRNEYE 673 (1044)
Q Consensus 654 ~~~eke~~qLk~e~~k~e~e 673 (1044)
. +++..-|+++.++....
T Consensus 165 ~--ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 165 E--EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred H--HHHHHHHHHHHHHHhch
No 500
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.55 E-value=3.4e+02 Score=30.13 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HH
Q 001617 538 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQIL----DLKKKQENQVQL-LK 612 (1044)
Q Consensus 538 ~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~----~L~~k~e~~~~l-~k 612 (1044)
.+...|+.|-.+...+...-++++.. .+.+++++.+.++. +|..+-+...++ ..
T Consensus 319 s~qet~eaKr~e~~~e~qrkEee~rq---------------------mFvqrvkekE~elke~Ekel~~kf~~lkr~h~e 377 (406)
T KOG3859|consen 319 SLQETYEAKRNEFLGELQRKEEEMRQ---------------------MFVQRVKEKEAELKEAEKELHEKFDRLKRLHQE 377 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001617 613 QKQKSDEAAKRLQDEIQFIKAQKVQLQ 639 (1044)
Q Consensus 613 ~k~k~Ee~~~~Le~ei~~~K~~k~~l~ 639 (1044)
.+.++|++.+.|+.++....+++....
T Consensus 378 Ek~kle~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 378 EKKKLEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!