Query 001617
Match_columns 1044
No_of_seqs 331 out of 2179
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 16:20:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001617.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_915-919//hhsearch_pdb/001617hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 1.0 1 1 712.1 25.4 353 2-402 4-359 (365)
2 3b6u_A Kinesin-like protein KI 1.0 1 1 702.6 22.7 346 5-395 17-371 (372)
3 3bfn_A Kinesin-like protein KI 1.0 1 1 694.7 21.8 348 4-402 16-372 (388)
4 2vvg_A Kinesin-2; motor protei 1.0 1 1 692.7 24.3 332 8-390 3-348 (350)
5 1goj_A Kinesin, kinesin heavy 1.0 1 1 691.7 24.7 340 5-392 2-345 (355)
6 3cob_A Kinesin heavy chain-lik 1.0 1 1 691.5 28.7 346 8-406 4-354 (369)
7 2owm_A Nckin3-434, related to 1.0 1 1 691.1 27.1 347 6-391 35-428 (443)
8 1x88_A Kinesin-like protein KI 1.0 1 1 685.9 22.4 337 5-386 4-359 (359)
9 1t5c_A CENP-E protein, centrom 1.0 1 1 682.8 25.1 338 7-390 2-341 (349)
10 1bg2_A Kinesin; motor protein, 1.0 1 1 681.2 22.1 324 4-377 2-325 (325)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=1.00 E-value=1 Score=712.05 Aligned_cols=353 Identities=40% Similarity=0.606 Sum_probs=321.8
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECC--CCCEEECCCEEEECEECCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8999998754999970899971000499625897189--87212367025703240999997499998864767988634
Q 001617 2 ETGGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPG--KPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQ 79 (1044)
Q Consensus 2 ~~~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~~v~~~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~ 79 (1044)
+|..+..++|+|+|||||+.+.|...++..++.+.++ ...+.++.+.|+||+||++.++ |++||+.++.|+|+++|+
T Consensus 4 ~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~~l~ 82 (365)
T 2y65_A 4 EREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNAS-QEKVYNEAAKSIVTDVLA 82 (365)
T ss_dssp ----CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHT
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCCEEEECCEEEECCEEECCCCC-HHHHHHHHHHHHHHHHHC
T ss_conf 5567899995999994969946731599259994799877679989989867469647899-899999863037799867
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98721888523687853102347889988650768999998777631157508999713211245885617999999999
Q 001617 80 GYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPD 159 (1044)
Q Consensus 80 G~n~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 159 (1044)
|||+||||||||||||||||+|+.+++..+|||||++.+||..+........|.|++||+|||||.|+|||++.
T Consensus 83 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~------ 156 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS------ 156 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT------
T ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCC------
T ss_conf 98248983458999996488668887555773779999999999833689539999999999877212622587------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 88998876457999992587668985898175479907977899999970101334567888899984149999999773
Q 001617 160 TANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 239 (1044)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i~~~~ 239 (1044)
...+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 157 -------------~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 223 (365)
T 2y65_A 157 -------------KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQEN 223 (365)
T ss_dssp -------------CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEE
T ss_pred -------------CCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf -------------6772378879998784278899658799999999999864665235688878876399999999970
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 15888779999988887526896898875588743346798035778989998644788999987201568889976568
Q 001617 240 KLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPY 319 (1044)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~~ipy 319 (1044)
.. ......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++.+ .||||
T Consensus 224 ~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~hvPy 285 (365)
T 2y65_A 224 LE--------------NQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK----THIPY 285 (365)
T ss_dssp TT--------------TCCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCC----SCCCG
T ss_pred CC--------------CCCEEEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf 58--------------8878689999997999882012189522478998888889999989999852788----87866
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHH
Q ss_conf 9885200000037998416898401122245444689855699889799999996300266542568640899-999999
Q 001617 320 RDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEM-LKMRQQ 398 (1044)
Q Consensus 320 rdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ei-~kLr~q 398 (1044)
||||||+||||+||||++|+|| +||||+..+++||++||+||+||++|+|+|.+|.++...++ .+++++
T Consensus 286 RdSkLT~lLqdsLgGnskt~mI----------~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e 355 (365)
T 2y65_A 286 RDSKLTRILQESLGGNARTTIV----------ICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355 (365)
T ss_dssp GGCHHHHHTGGGTTSSSEEEEE----------EEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----
T ss_pred CCCHHHHHHHHHCCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 3578889877613899637999----------984675278899999999999972156754117889999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 001617 399 LEFL 402 (1044)
Q Consensus 399 l~~L 402 (1044)
++++
T Consensus 356 ~~~~ 359 (365)
T 2y65_A 356 KEKN 359 (365)
T ss_dssp ----
T ss_pred HHHH
T ss_conf 9999
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=1.00 E-value=1 Score=702.62 Aligned_cols=346 Identities=45% Similarity=0.682 Sum_probs=314.3
Q ss_pred CCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEEC---------CCEEEECEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99987549999708999710004996258971898721236---------702570324099999749999886476798
Q 001617 5 GGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG---------THSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1044)
Q Consensus 5 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---------~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~ 75 (1044)
.+..++|+|+|||||+.+.|...++..|+.+.+....+.+. .+.|+||+||++.++ |++||+.++.|+|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~-Q~~Vy~~~~~plv~ 95 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK-QFELYDETFRPLVD 95 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCC-HHHHHHHTHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEECCEEECCCCC-HHHHHHHHHHHHHH
T ss_conf 78999839999869899355304996389995899879997788777778438876869688674-17898878777789
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCC
Q ss_conf 86349872188852368785310234788998865076899999877763115750899971321124588561799999
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCL 155 (1044)
Q Consensus 76 ~~l~G~n~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 155 (1044)
++|+|||+||||||||||||||||+|..+++..+|||||++.+||..+.. .....|.|++||+|||||.|+|||++..
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~- 173 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ- 173 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT-
T ss_pred HHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCEEEECCCCCC-
T ss_conf 98679813588656899999875755899834488188999999998651-4577369999899996788899778977-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 99998899887645799999258766898589817547990797789999997010133456788889998414999999
Q 001617 156 NKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235 (1044)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i 235 (1044)
...+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|
T Consensus 174 -----------------~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v 236 (372)
T 3b6u_A 174 -----------------TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236 (372)
T ss_dssp -----------------TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEE
T ss_pred -----------------CCCCEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf -----------------777368987999675289889992679999999999997667254557787776429999999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97731588877999998888752689689887558874334679803577898999864478899998720156888997
Q 001617 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGV 315 (1044)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~ 315 (1044)
++..... +.......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++. .
T Consensus 237 ~~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~ 301 (372)
T 3b6u_A 237 ECSEVGL-----------DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKS----T 301 (372)
T ss_dssp EEEC----------------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-------
T ss_pred EEEECCC-----------CCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----C
T ss_conf 9960477-----------887626788999997988765544575154314675650649999999999863898----8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 65689885200000037998416898401122245444689855699889799999996300266542568640899999
Q 001617 316 HVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKM 395 (1044)
Q Consensus 316 ~ipyrdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ei~kL 395 (1044)
||||||||||+||||+||||++|+|| +||||+..+++||++||+||+||++|+|+|.+|.++....+.+|
T Consensus 302 hvPyRdSkLT~lLqdsLgGnskt~mI----------a~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~ 371 (372)
T 3b6u_A 302 HIPYRDSKLTRLLQDSLGGNAKTVMV----------ANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371 (372)
T ss_dssp CCCGGGSHHHHHTTTTTTSSSEEEEE----------EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----------
T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHC
T ss_conf 78662208899999862999548999----------99688524799999999999998645566625577579999851
No 3
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=694.69 Aligned_cols=348 Identities=35% Similarity=0.543 Sum_probs=306.8
Q ss_pred CCCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEE------CCCEEEECEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998754999970899971000499625897189872123------670257032409999974999988647679886
Q 001617 4 GGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGL 77 (1044)
Q Consensus 4 ~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~------~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 77 (1044)
..+..++|+|+|||||+++.|...+...|+.+.++...... ..+.|+||+||++.++ |++||+.++.|+|+++
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~t-Q~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERST-QQDIYAGSVQPILRHL 94 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCC-HHHHHHHHTGGGHHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHCCCCCCEEEECCCCEEEEECCCCCCCEEEEECCEEECCCCC-HHHHHHHHHHHHHHHH
T ss_conf 568999979999779899145346998639955998599956888877059872369567897-7577899888888876
Q ss_pred HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEEEEHHHHHHHHHHHCCCCCC
Q ss_conf 34987218885236878531023478899886507689999987776311---575089997132112458856179999
Q 001617 78 FQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK---DQTEFQLHVSFIEILKEEVRDLLDPPC 154 (1044)
Q Consensus 78 l~G~n~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~---~~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1044)
|+|||+||||||||||||||||+|+ ...+|||||++.+||..+.... ....|.|++||+|||||.|+|||+|..
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~---~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 171 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS
T ss_pred HCCCEEEEEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEHHCCCC
T ss_conf 1696566761168889997686567---5566416899999999998742337771489999999998886456001678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99999889988764579999925876689858981754799079778999999701013345678888999841499999
Q 001617 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1044)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~ 234 (1044)
..+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 172 -------------------~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~ 232 (388)
T 3bfn_A 172 -------------------GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVK 232 (388)
T ss_dssp -------------------CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEE
T ss_pred -------------------CCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf -------------------8845998699998853605999589999999999975026522364778777773999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99773158887799999888875268968988755887433467980357789899986447889999872015688899
Q 001617 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1044)
Q Consensus 235 i~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~ 314 (1044)
|.+..... ......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++..
T Consensus 233 v~~~~~~~-------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~---- 295 (388)
T 3bfn_A 233 VDQRERLA-------------PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP---- 295 (388)
T ss_dssp EEEEESST-------------TCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCS----
T ss_pred EEEECCCC-------------CCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 99822688-------------8733688999998987766554567551147776750639999999999966999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 76568988520000003799841689840112224544468985569988979999999630026654256864089999
Q 001617 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLK 394 (1044)
Q Consensus 315 ~~ipyrdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ei~k 394 (1044)
||||||||||+||||+|||||+|+|| |||||+..+++||++||+||+||++|+|+|.+|.++....+..
T Consensus 296 -hVPYRdSkLTrlLqdsLgGnskT~mI----------a~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~ 364 (388)
T 3bfn_A 296 -RVPYRDSKLTRLLQDSLGGSAHSILI----------ANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGP 364 (388)
T ss_dssp -CCCGGGSHHHHHTTTSSSTTCEEEEE----------EEECCSGGGHHHHHHHHHHHCSEEEEC----------------
T ss_pred -CCCCCCCHHHHHHHHHHCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf -88675658899999860899628999----------9979850008999999999999851757673567899899988
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 001617 395 MRQQLEFL 402 (1044)
Q Consensus 395 Lr~ql~~L 402 (1044)
++...++|
T Consensus 365 ~k~~~~~l 372 (388)
T 3bfn_A 365 VKLSQKEL 372 (388)
T ss_dssp --------
T ss_pred HHHHHHHH
T ss_conf 78899986
No 4
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=1.00 E-value=1 Score=692.68 Aligned_cols=332 Identities=41% Similarity=0.659 Sum_probs=303.9
Q ss_pred CCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEEC--------------CCEEEECEECCCCCCCHHHHHHHHHHHH
Q ss_conf 87549999708999710004996258971898721236--------------7025703240999997499998864767
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG--------------THSFTFDHVYGSTGSPSSAMFDECIAPL 73 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--------------~~~f~FD~Vf~~~~s~q~~vy~~~v~pl 73 (1044)
.++|+|+|||||+++.|...++..|+.+.+....+.+. .+.|+||+||++.++ |++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSC-NYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCC-HHHHHHHTTHHH
T ss_pred CCCEEEEEEECCCCHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEECCCCC-HHHHHHHHHHHH
T ss_conf 9986999990979913320499538998499988999604554433445778527667889799761-068998789999
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCC
Q ss_conf 98863498721888523687853102347889988650768999998777631157508999713211245885617999
Q 001617 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1044)
Q Consensus 74 V~~~l~G~n~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1044)
|+++++|||+||||||||||||||||+|+. ..+|||||++.+||..+........|.|++||+|||||.|+|||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCS---SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEECCCCC
T ss_conf 999857885268864689999987853587---66755889999999999865368757999999999287888855677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99999988998876457999992587668985898175479907977899999970101334567888899984149999
Q 001617 154 CLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233 (1044)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i 233 (1044)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|
T Consensus 159 --------------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (350)
T 2vvg_A 159 --------------------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMV 218 (350)
T ss_dssp --------------------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEE
T ss_pred --------------------CCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf --------------------684256748998881587799749999999999999841460014578888765299999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99977315888779999988887526896898875588743346798035778989998644788999987201568889
Q 001617 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKE 313 (1044)
Q Consensus 234 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~ 313 (1044)
+|++...... ......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..
T Consensus 219 ~v~~~~~~~~------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--- 283 (350)
T 2vvg_A 219 RIECSEVIEN------------KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT--- 283 (350)
T ss_dssp EEEEEEC----------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCS---
T ss_pred EEEEEECCCC------------CCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 9999504678------------7617889999996898875544565077889998875899999999999973899---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 97656898852000000379984168984011222454446898556998897999999963002665425686408
Q 001617 314 GVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMST 390 (1044)
Q Consensus 314 ~~~ipyrdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ 390 (1044)
||||||||||+||||+|||||+|+|| +||||+..+++||++||+||+||++|+|+|.+|.++...
T Consensus 284 --hvPyRdSkLT~lLqdsLgGnskt~mI----------~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 284 --HIPYRDSKLTRLLQDSLGGNSKTLMC----------ANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp --SCCGGGCHHHHHTTTTTTSSSEEEEE----------EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred --CCCCCCCHHHHHHHHHCCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHC
T ss_conf --88764558889989860899628999----------996884001899999999999985445666125782010
No 5
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=1.00 E-value=1 Score=691.65 Aligned_cols=340 Identities=41% Similarity=0.608 Sum_probs=307.5
Q ss_pred CCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEE---CCCEEEECEECCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998754999970899971000499625897189872123---6702570324099999749999886476798863498
Q 001617 5 GGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY 81 (1044)
Q Consensus 5 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~ 81 (1044)
++..++|+|+|||||+.+.|...+...|+.+.++...... ..+.|+||+||++.++ |++||+.++.|+|+++++||
T Consensus 2 s~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 2 SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCK-QSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp CCSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCC-HHHHHHHHTHHHHHHHTTTC
T ss_pred CCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCEEEECCCCCCCEEEECEEECCCCC-CHHHHHHHHHHHHHHHHCCC
T ss_conf 98999869999889999578506996399986998499726897527761959899876-27999999999999985798
Q ss_pred CCCEEEECCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 72188852368785310234788-99886507689999987776311575089997132112458856179999999998
Q 001617 82 NATVLAYGQTGSGKTYTMGTGFK-DGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1044)
Q Consensus 82 n~tIlaYG~tgSGKTyTm~G~~~-~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1044)
|+||||||||||||||||+|+.. +...+|||||++.+||..+........|.|++||+|||||.|+|||+|..
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~------ 154 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN------ 154 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC------
T ss_pred CCEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCCC------
T ss_conf 22288889999986067515788776668706799999999987145685089999999997897788445766------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 89988764579999925876689858981754799079778999999701013345678888999841499999997731
Q 001617 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1044)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i~~~~~ 240 (1044)
..+.|++++.+++++.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 155 -------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 221 (355)
T 1goj_A 155 -------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNV 221 (355)
T ss_dssp -------------CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEET
T ss_pred -------------CCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf -------------7852688589999606877995799999999999997524723344789877760999999999606
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 58887799999888875268968988755887433467980357789899986447889999872015688899765689
Q 001617 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1044)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~~ipyr 320 (1044)
. .+....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|++++. .|||||
T Consensus 222 ~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~hvPyR 283 (355)
T 1goj_A 222 E--------------TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKS----SHVPYR 283 (355)
T ss_dssp T--------------TTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSC----SCCCGG
T ss_pred C--------------CCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCC
T ss_conf 8--------------8955665799998988774432466026678887651679999999999864899----988775
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 885200000037998416898401122245444689855699889799999996300266542568640899
Q 001617 321 DSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEM 392 (1044)
Q Consensus 321 dSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ei 392 (1044)
|||||+||||+||||++|+|| +||||+..+++||++||+||+||++|+|+|.+|.++...++
T Consensus 284 dSkLT~lLqdsLgGns~t~mI----------~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l 345 (355)
T 1goj_A 284 DSKLTRILQESLGGNSRTTLI----------INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345 (355)
T ss_dssp GCHHHHHTGGGTTSSCEEEEE----------EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSS
T ss_pred CCHHHHHHHHHHCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHH
T ss_conf 579999999972899768999----------99796302699999999999997236677556787999999
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=1.00 E-value=1 Score=691.55 Aligned_cols=346 Identities=35% Similarity=0.566 Sum_probs=309.4
Q ss_pred CCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEE-----CCCEEEECEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8754999970899971000499625897189872123-----67025703240999997499998864767988634987
Q 001617 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-----GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYN 82 (1044)
Q Consensus 8 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~-----~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~n 82 (1044)
.++|+|+|||||+.+.|...+...++.. .+...+.. ..+.|+||+||++.++ |++||+. +.|+|+.+++|||
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNAT-QDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCC-HHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCEEEEEECCCCCHHHCCCCCCEEEEC-CCCEEEEECCCCCCCEEEECCEEECCCCC-CCEEHHH-HHHHHHHHHCCCC
T ss_conf 9984999987999834546798379976-99679993378998268865989899997-3140221-3132576646971
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 21888523687853102347889988650768999998777631157508999713211245885617999999999889
Q 001617 83 ATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTAN 162 (1044)
Q Consensus 83 ~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~ 162 (1044)
+||||||||||||||||+|+. ..+|||||++.+||..+........|.|++||+|||||.|+|||.|...
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------- 150 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGAD---SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA------- 150 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCS---SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-------
T ss_pred EEEEEECCCCCCCEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEECCCCCCC-------
T ss_conf 599987899998837511799---8886258999999999874135752677899987707632345787556-------
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 98876457999992587668985898175479907977899999970101334567888899984149999999773158
Q 001617 163 GHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLS 242 (1044)
Q Consensus 163 ~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i~~~~~~~ 242 (1044)
....+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 151 ---------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~- 220 (369)
T 3cob_A 151 ---------KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ- 220 (369)
T ss_dssp ---------CCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-
T ss_pred ---------CCCCEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEEEEECCC-
T ss_conf ---------7764278997999888059879980899999999998752552303447787776338999999985278-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 88779999988887526896898875588743346798035778989998644788999987201568889976568988
Q 001617 243 PVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDS 322 (1044)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~~ipyrdS 322 (1044)
......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+.. |||||||
T Consensus 221 -------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-----hvPyRdS 282 (369)
T 3cob_A 221 -------------TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ-----HIPYRNH 282 (369)
T ss_dssp -------------TCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCS-----CCCGGGC
T ss_pred -------------CCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCC
T ss_conf -------------7727888999996887875443476302347787877889999999999864899-----6787477
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 52000000379984168984011222454446898556998897999999963002665425686408999999999999
Q 001617 323 KLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFL 402 (1044)
Q Consensus 323 kLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ei~kLr~ql~~L 402 (1044)
|||+||||+|||||+|+|| |||||+..+++||++||+||+||++|+|+|.+|.++ .++.+|++++..+
T Consensus 283 kLT~lLqdsLgGnskt~mI----------a~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~ 350 (369)
T 3cob_A 283 KLTMLMSDSLGGNAKTLMF----------VNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYW 350 (369)
T ss_dssp HHHHHTTTTTTSSSEEEEE----------EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHHH
T ss_conf 7788788762898527999----------994772002899999999999986545677415788--9999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 001617 403 QAEL 406 (1044)
Q Consensus 403 ~~eL 406 (1044)
+.++
T Consensus 351 ~~~~ 354 (369)
T 3cob_A 351 KEQA 354 (369)
T ss_dssp ----
T ss_pred HHHC
T ss_conf 9764
No 7
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=1.00 E-value=1 Score=691.13 Aligned_cols=347 Identities=40% Similarity=0.610 Sum_probs=299.0
Q ss_pred CCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEE--------------------ECCCEEEECEECCCC------C
Q ss_conf 99875499997089997100049962589718987212--------------------367025703240999------9
Q 001617 6 GEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQ--------------------IGTHSFTFDHVYGST------G 59 (1044)
Q Consensus 6 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~--------------------~~~~~f~FD~Vf~~~------~ 59 (1044)
...++|+|+|||||+++.|...++..++.+.+....+. ...+.|+||+||++. .
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCC
T ss_conf 89989499999399996886269945999758986279955887654333332123366772685273827877677657
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEEE
Q ss_conf 97499998864767988634987218885236878531023478899886507689999987776311---575089997
Q 001617 60 SPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK---DQTEFQLHV 136 (1044)
Q Consensus 60 s~q~~vy~~~v~plV~~~l~G~n~tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~---~~~~~~v~v 136 (1044)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++.+||..|.... ....|.|+|
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~v 191 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKV 191 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC---TTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 8799998763246888863687427998678899998886468---7777537999999999887652136773499999
Q ss_pred EHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 13211245885617999999999889988764579999925876689858981754799079778999999701013345
Q 001617 137 SFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATG 216 (1044)
Q Consensus 137 S~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~ 216 (1044)
||+|||||.|+|||.+.... .....+.|+|++.++++|.|++++.|.|++|++.+|..|..+|.++
T Consensus 192 S~lEIYnE~i~DLL~~~~~~--------------~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~ 257 (443)
T 2owm_A 192 SYFEVYNEHVRDLLAPVVPN--------------KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVA 257 (443)
T ss_dssp EEEEEETTEEEETTSCCCSS--------------CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBC
T ss_pred EEEEEECCEEEECCCCCCCC--------------CCCCCCCEEECCCCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999889756856763457--------------8653443037799999526877998289999999999997337863
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888899984149999999773158887799999888875268968988755887433467980357789899986447
Q 001617 217 STNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLL 296 (1044)
Q Consensus 217 st~~n~~SSRSH~if~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~ 296 (1044)
+|.||..|||||+||+|+|.+...... ........|+|+|||||||||+.++++.|.|++|+.+||+||+
T Consensus 258 ~T~~N~~SSRSH~Ifti~v~~~~~~~~----------~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~ 327 (443)
T 2owm_A 258 STKMNDTSSRSHAVFTIMLKQIHHDLE----------TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLT 327 (443)
T ss_dssp SSSSSCBCTTEEEEEEEEEEEEC-----------------CCEEEEEEEEEECCCCCC--------------CCSSHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCC----------CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCHHHH
T ss_conf 375877667771999999998603567----------8874068877999979887535656776641211001057899
Q ss_pred HHHHHHHHHHCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 889999872015688-----------------899765689885200000037998416898401122245444689855
Q 001617 297 ALGNVISALGDDKKR-----------------KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADI 359 (1044)
Q Consensus 297 aL~~vi~aL~~~~~~-----------------~~~~~ipyrdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~ 359 (1044)
+||+||.+|++...+ ....||||||||||+||||+||||++|+|| |||||+
T Consensus 328 aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mI----------a~iSP~-- 395 (443)
T 2owm_A 328 TLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI----------ACISPT-- 395 (443)
T ss_dssp HHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEE----------EEECSS--
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE----------EEECCC--
T ss_conf 99999999860455555444322234333445677745574547688888862799708999----------981643--
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCHH
Q ss_conf 69988979999999630026654256-864089
Q 001617 360 NAEETLNTLKYANRARNIQNKPIVNR-DPMSTE 391 (1044)
Q Consensus 360 ~~~eTl~TL~~a~r~r~iknkp~vn~-~~~~~e 391 (1044)
+++||++||+||+||++|+|+|.+|. ++....
T Consensus 396 ~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~ 428 (443)
T 2owm_A 396 DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAA 428 (443)
T ss_dssp CHHHHHHHHHHHHHHTTCEECCCCCCC------
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHH
T ss_conf 078999999999998544563335135776678
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=1.00 E-value=1 Score=685.94 Aligned_cols=337 Identities=41% Similarity=0.630 Sum_probs=301.4
Q ss_pred CCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEE---------CCCEEEECEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998754999970899971000499625897189872123---------6702570324099999749999886476798
Q 001617 5 GGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1044)
Q Consensus 5 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~---------~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~ 75 (1044)
.+..++|+|+|||||++..|...++..++.+.+....+.+ ..+.|+||+||++.++ |++||+.++.|+|+
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~ 82 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK-QIDVYRSVVCPILD 82 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCC-HHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECEEEEECCCC-HHHHHHHHHHHHHH
T ss_conf 78999859999908999256304996499975998579983787667767448754079852674-53789999888689
Q ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH
Q ss_conf 863498721888523687853102347889--------988650768999998777631157508999713211245885
Q 001617 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKD--------GYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVR 147 (1044)
Q Consensus 76 ~~l~G~n~tIlaYG~tgSGKTyTm~G~~~~--------~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~ 147 (1044)
++|+|||+||||||||||||||||+|+... ...+|||||++.+||..+.. ....|.|++||+|||||.|+
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~ 160 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELF 160 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEE
T ss_pred HHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEEEEEEECCEEE
T ss_conf 8737982489984789998756885667766544444566687038999999987741--58259999999999576100
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 617999999999889988764579999925876689--858981754799079778999999701013345678888999
Q 001617 148 DLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSN--GVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSS 225 (1044)
Q Consensus 148 DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~--~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SS 225 (1044)
|||+|... ....+.+++++. ++++|.|++++.|.|++|++.+|..|..+|.+++|.||..||
T Consensus 161 DLL~~~~~----------------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SS 224 (359)
T 1x88_A 161 DLLNPSSD----------------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSS 224 (359)
T ss_dssp ETTCTTSC----------------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred EHHCCCCC----------------CCCCCEEEECCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 12115655----------------56660588655778988982878998499999999999877514612254778777
Q ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84149999999773158887799999888875268968988755887433467980357789899986447889999872
Q 001617 226 RSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISAL 305 (1044)
Q Consensus 226 RSH~if~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL 305 (1044)
|||+||+|+|.+.....+ .......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|
T Consensus 225 RSH~if~i~i~~~~~~~~-----------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL 293 (359)
T 1x88_A 225 RSHSVFSVTIHMKETTID-----------GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 293 (359)
T ss_dssp HCEEEEEEEEEEEEECTT-----------SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEECCCCC-----------CCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 762899999987435578-----------871377889999818998735435886320177765307899999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01568889976568988520000003799841689840112224544468985569988979999999630026654256
Q 001617 306 GDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNR 385 (1044)
Q Consensus 306 ~~~~~~~~~~~ipyrdSkLT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~ 385 (1044)
+.... ||||||||||+||||+||||++|+|| |||||+..+++||++||+||+||++|+|+|.+|.
T Consensus 294 ~~~~~-----hvPyRdSkLT~lLqdsLgGnskt~mI----------a~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 294 VERTP-----HVPYRESKLTRILQDSLGGRTRTSII----------ATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HTTCS-----CCCGGGSHHHHHTGGGSSSSSEEEEE----------EEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HCCCC-----CCCCCCCHHHHHHHHHHCCCCEEEEE----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 64799-----77622566889999975899729999----------9978974568999999999999865667661477
Q ss_pred C
Q ss_conf 8
Q 001617 386 D 386 (1044)
Q Consensus 386 ~ 386 (1044)
.
T Consensus 359 ~ 359 (359)
T 1x88_A 359 K 359 (359)
T ss_dssp -
T ss_pred C
T ss_conf 9
No 9
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=682.82 Aligned_cols=338 Identities=41% Similarity=0.630 Sum_probs=300.5
Q ss_pred CCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEE--CCCEEEECEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98754999970899971000499625897189872123--6702570324099999749999886476798863498721
Q 001617 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNAT 84 (1044)
Q Consensus 7 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~--~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~n~t 84 (1044)
+.++|+|+|||||+...|...|...++.+......+.. +.+.|+||+||++.++ |++||+.++.|+|+++|+|||+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~t-Q~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNET-TKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSC-HHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCHHHHCCCCCCEEEEECCCCEEEECCCCEEEECCEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98997999988988915642599747999589976997799828878979899999-89999999899999987488640
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 88852368785310234788998865076899999877763115750899971321124588561799999999988998
Q 001617 85 VLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1044)
Q Consensus 85 IlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1044)
|||||||||||||||+|+ ...+|||||++.+||..+... ....|.|++||+|||||.|+|||.+..
T Consensus 81 ifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~---------- 146 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQ---------- 146 (349)
T ss_dssp EEEEESTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSC----------
T ss_pred EEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEEEEEECCEEEECCCCCC----------
T ss_conf 562158999987687468---888745889999999999747-688679998899984877788667877----------
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 87645799999258766898589817547990797789999997010133456788889998414999999977315888
Q 001617 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPV 244 (1044)
Q Consensus 165 ~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i~~~~~~~~~ 244 (1044)
...++.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|++.....+
T Consensus 147 -------~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~- 218 (349)
T 1t5c_A 147 -------KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEP- 218 (349)
T ss_dssp -------TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC---
T ss_pred -------CCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC-
T ss_conf -------787746998899998744887998689999999999752334523365778888763999999998516887-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77999998888752689689887558874334679803577898999864478899998720156888997656898852
Q 001617 245 SLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 324 (1044)
Q Consensus 245 ~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~~ipyrdSkL 324 (1044)
....+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++++ ..|||||||||
T Consensus 219 --------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~---~~hvPyRdSkL 287 (349)
T 1t5c_A 219 --------SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKL 287 (349)
T ss_dssp -------------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC---TTSSCGGGSHH
T ss_pred --------CCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHH
T ss_conf --------6767637899999997998753221478641113354776899999999999855687---77776556377
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 000000379984168984011222454446898556998897999999963002665425686408
Q 001617 325 TRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNIQNKPIVNRDPMST 390 (1044)
Q Consensus 325 T~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~iknkp~vn~~~~~~ 390 (1044)
|+||||+||||++|+|| |||||+ +++||++||+||+||++|+|+|.+|.++...
T Consensus 288 T~lLqdsLgGnskt~mI----------~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 288 TRILQNSLGGNAKTRII----------CTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHTGGGTTSSSEEEEE----------EEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHCCCCCEEEEE----------EEECCC--CHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 89999861899629999----------994777--7899999999999974536676536678888
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=1.00 E-value=1 Score=681.19 Aligned_cols=324 Identities=42% Similarity=0.665 Sum_probs=300.5
Q ss_pred CCCCCCCEEEEEEECCCCCCHHCCCCCCEEEEECCCCCEEECCCEEEECEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998754999970899971000499625897189872123670257032409999974999988647679886349872
Q 001617 4 GGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNA 83 (1044)
Q Consensus 4 ~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~f~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~n~ 83 (1044)
.....++|+|+|||||+.+.|...+...++.+. +...+.+..+.|+||+||++.++ |++||+.++.|+|+++++|||+
T Consensus 2 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~~~~~~~~f~FD~Vf~~~~s-Q~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 2 ADLAECNIKVMCRFRPLNESEVNRGDKYIAKFQ-GEDTVVIASKPYAFDRVFQSSTS-QEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp -CCSSCEEEEEEEECCCCHHHHHHTCCBCCEEE-TTTEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCCCEEEEEECCCCCHHHHCCCCEEEEEEC-CCCEEEECCEEEECCEEECCCCC-HHHHHHHHHHHHHHHHHCCCEE
T ss_conf 988899879999909899567156980699977-99859988778777868499999-8999999751457888579768
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 18885236878531023478899886507689999987776311575089997132112458856179999999998899
Q 001617 84 TVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANG 163 (1044)
Q Consensus 84 tIlaYG~tgSGKTyTm~G~~~~~~~~Glipr~i~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~ 163 (1044)
||||||||||||||||+|+..++..+|||||++.+||..+........|.|++||+|||||+|+|||++.
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~---------- 149 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS---------- 149 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT----------
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCC----------
T ss_conf 9998788999983270466888555761779999999999842689349999999999658301513688----------
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 88764579999925876689858981754799079778999999701013345678888999841499999997731588
Q 001617 164 HTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSP 243 (1044)
Q Consensus 164 ~~~~~~~~~~~~l~i~e~~~~~~~i~gl~e~~V~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~i~~~~~~~~ 243 (1044)
...+.+++++.+++++.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 150 ---------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-- 218 (325)
T 1bg2_A 150 ---------KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-- 218 (325)
T ss_dssp ---------CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT--
T ss_pred ---------CCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEEEEEEECC--
T ss_conf ---------777248887999888358668807999999999999985273600579998888759999999997068--
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 87799999888875268968988755887433467980357789899986447889999872015688899765689885
Q 001617 244 VSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSK 323 (1044)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~skL~lVDLAGsEr~~~~~~~~~~~~E~~~IN~sL~aL~~vi~aL~~~~~~~~~~~ipyrdSk 323 (1044)
......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++.. ||||||||
T Consensus 219 ------------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~-----hvPyRdSk 281 (325)
T 1bg2_A 219 ------------TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-----YVPYRDSK 281 (325)
T ss_dssp ------------TCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCS-----CCCGGGSH
T ss_pred ------------CCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCH
T ss_conf ------------8867789999998988884532478520006777777879999999999973899-----77653568
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 200000037998416898401122245444689855699889799999996300
Q 001617 324 LTRLLQDSLGGNSRTVMIGNLFILKFDLSCISPADINAEETLNTLKYANRARNI 377 (1044)
Q Consensus 324 LT~lLq~~Lggns~t~~I~~~~~~~~~~~~vsp~~~~~~eTl~TL~~a~r~r~i 377 (1044)
||+||||+|||||+|+|| +||||+..+++||++||+||+|||+|
T Consensus 282 LT~lLqdsLgGns~t~mi----------a~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 282 MTRILQDSLGGNCRTTIV----------ICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHGGGTSSSSCEEEEE----------EEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHCCCCCEEEE----------EEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999972899758999----------99798624589999999999986549
Done!