BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001618
(1043 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
+ ++YNL +Y+ +GDY++A YY +++ + E +Y LG K GD+ A+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEY 57
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SS 378
++K LE+ P + E LG+ Y + G ++A E +KA ++DPR A+A+ +LG
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 379 DTGAALDAFKTARTL 393
D A++ ++ A L
Sbjct: 118 DYDEAIEYYQKALEL 132
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 360 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 418
+DPR A+A+ +LG D A++ ++ A L ++ E N+G ++++G+
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGD 118
Query: 419 FESAHQSFKDAL 430
++ A + ++ AL
Sbjct: 119 YDEAIEYYQKAL 130
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348
+ E +Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G +
Sbjct: 64 LDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 349 KAQELLRKAAKIDPR 363
+A E +KA ++DPR
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 51 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
LG KQ + +E A +YY KA +D W G +G+ ++A ++ L
Sbjct: 7 LGNAYYKQGDYDE----AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 111 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 170
E D + A + +G Y +++E+Y++AL++ P A +G YK G +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDE 121
Query: 171 ARQAFQRALQLDP 183
A + +Q+AL+LDP
Sbjct: 122 AIEYYQKALELDP 134
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
W G +G+ ++A ++ LE D + A + +G Y +++E+Y++AL
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 204
++ P A +G YK G +A + +Q+AL+LDP + EA L + +
Sbjct: 63 ELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--- 118
Query: 205 IRKGMEKMQRAFEIYP 220
+ +E Q+A E+ P
Sbjct: 119 YDEAIEYYQKALELDP 134
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G ++G +D + + + + E S + W NL + Y+ QG++ A++ YQ L
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGDYDEAIEYYQKAL 96
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ W NL + Y+ QG++ A++ YQ L A+ L +Y+ + + +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P + ++ G A K
Sbjct: 60 KALELDPRSAEAWYNLGNAYYK 81
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLGD 312
+ ++YNL +Y+ +GDY++A YY +++ ++P +Y LG K GD
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--------LYPNNAEAWYNLGNAYYKQGD 58
Query: 313 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA ++ P +A+A +LG
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 360 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKKAGE 399
+ P +A+A+ +LG D A++ ++ A L E
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELY---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 289 EINKPHEFIFP-----YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 339
++P +Y LG K GD+ A+ ++K LE+YP+N E + LG+
Sbjct: 72 --------LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 51 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
LG KQ + +E A +YY KA + + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 111 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166
E +N A + +G Y +++E+Y++AL+++P+ A + +G + K G
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA-KQNLGNAKQKQG 125
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 328 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 385
P N E LG+ Y + G ++A E +KA ++ P +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 386 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
++ A L E N+G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALELYPNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 205
+ P +G YK G +A + +Q+AL+L P N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGD---Y 59
Query: 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 265
+ +E Q+A E+YP A A L N ++ G + + + AL + P + + N
Sbjct: 60 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY---PNNAEAKQN 116
Query: 266 LARSYHSKG 274
L + +G
Sbjct: 117 LGNAKQKQG 125
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ W NL + Y+ QG++ A++ YQ L Y +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--YPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P+N ++ G A K
Sbjct: 68 KALELYPNNAEAWYNLGNAYYK 89
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 613 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 672
++A E Y + + + +N A G ++G +D + + + + E ++ + W
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----LYPNNAEAW 80
Query: 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 706
NL + Y+ QG++ A++ YQ L + N +A+
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSA 316
+ ++YNL +Y+ +GDY++A YY +++ + N + Y LG K GD+ A
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----YNLGNAYYKQGDYDEA 62
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
+ ++K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 360 IDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTL 393
+DP +A+A+ +LG D A++ ++ A L
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 289 -EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 339
+ N + Y LG K GD+ A+ ++K LE+ P+N E + LG+
Sbjct: 72 LDPNNAEAW----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 51 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
LG KQ + +E A +YY KA +D + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 111 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166
E D +N A + +G Y +++E+Y++AL++ P+ A + +G + K G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNAKQKQG 125
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 328 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 385
P N E LG+ Y + G ++A E +KA ++DP +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 386 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
++ A L + E N+G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 205
+ P +G YK G +A + +Q+AL+LDP N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---Y 59
Query: 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 265
+ +E Q+A E+ P A A L N ++ G + + + AL + P + + N
Sbjct: 60 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQN 116
Query: 266 LARSYHSKG 274
L + +G
Sbjct: 117 LGNAKQKQG 125
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P+N ++ G A K
Sbjct: 68 KALELDPNNAEAWYNLGNAYYK 89
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 613 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 672
++A E Y + + +N A G ++G +D + + + + E + + W
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAW 80
Query: 673 INLAHVYFAQGNFALAMKMYQNCLR 697
NL + Y+ QG++ A++ YQ L
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
+ ++ NL +Y+ +GDY+KA YY ++ E++ + + Y LG K GD++ A+
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKAL-ELDPNNASAW--YNLGNAYYKQGDYQKAIEY 65
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
++K LE+ P+N + G+ Y + G +KA E +KA ++DP +A+A +LG
Sbjct: 66 YQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
W G +G+ ++A ++ LE D +N A + +G Y ++E+Y++AL
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
++ P+ A G YK G KA + +Q+AL+LDP N +A
Sbjct: 71 ELDPNNAKAWYR-RGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 281
A A L N ++ G + + + AL + P + ++YNL +Y+ +GDY+KA
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD---PNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 282 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 339
YY ++ E++ + + Y G K GD++ A+ +++K LE+ P+N + + LG+
Sbjct: 65 YYQKAL-ELDPNNAKAW--YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
K+ + A +YY KA +D + S W G +G+ ++A ++ LE D +N A
Sbjct: 21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166
+ + +G Y ++E Y++AL++ P+ A + +G + K G
Sbjct: 81 YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA-KQNLGNAKQKQG 125
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 328 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALD 385
P N E K LG+ Y + G +KA E +KA ++DP +A A+ +LG D A++
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 386 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
++ A L + + G ++++G+++ A + ++ AL
Sbjct: 65 YYQKALEL-----DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ W NL + Y+ QG++ A++ YQ L +A L +Y+ +Q +
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELD--PNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P+N + G A K
Sbjct: 68 KALELDPNNAKAWYRRGNAYYK 89
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 145/335 (43%), Gaps = 28/335 (8%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++E A A+
Sbjct: 70 YSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 108 IVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165
L+ + D V + LG GR ++ Y +A++ P+ A +G
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAIETQPNFAVAWS-NLGCVFNAQ 182
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
G++ A F++A+ LDP ++A + L + EA + + RA + P A+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285
LA ++ G L A+ + H P +Y NLA + KG +A Y
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNT 296
Query: 286 SVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340
+++ + P + L ++ + G+ A+ + K LE++P+ L +
Sbjct: 297 ALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
Q G++++A ++A +I P A A+ ++G L
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 150/360 (41%), Gaps = 51/360 (14%)
Query: 233 FFFTGQHFLVEQLTETA----LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
+ HF +L +A LA+ + P + +Y NL Y +G ++A +Y +++
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348
KP +FI Y L + GD A+ + L+ PD LG++ LG++E
Sbjct: 96 L--KP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 349 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL----------LKKA 397
+A+ KA + P A A+ +LG + + A+ F+ A TL L
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 398 GEEVPI-------------------EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 438
+E I V N+ +++E+G + A +++ A+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-------- 264
Query: 439 LDSKTKTYVIDASASMLQ-FKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDT 496
+ + + DA ++ K+ E+ N + L L NLA + + +
Sbjct: 265 ---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 497 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 556
A LYR L + ++ A+ LA++ + + LQ ++ EA++++ + +A S +G+
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 27/216 (12%)
Query: 503 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLG 555
YR L D++D Y+ LAA A +++ +++ AL+ N N L LG
Sbjct: 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149
Query: 556 DLELKNDDWVKAKET--------------FRAASDATDGKDSYATLSLGNWNYFAALRNE 601
LE ++KA ET F A + + + N+ A N
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
K EA ++A Y R + ++ V E+G D++ D + + E
Sbjct: 210 GNVLK-EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 662 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 697
PD + NLA+ +G+ A A Y LR
Sbjct: 269 -----HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 422
A+A+ +LG + + G +A + R L+ + + + N+ G+ E A
Sbjct: 65 LLAEAYSNLGN--VYKERGQLQEAIEHYRHALRLKPDFIDGYI--NLAAALVAAGDMEGA 120
Query: 423 HQSFKDAL 430
Q++ AL
Sbjct: 121 VQAYVSAL 128
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 360 IDPRDAQAFIDLG 372
+DP +A+A +LG
Sbjct: 72 LDPNNAEAKQNLG 84
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 317
+ ++YNL +Y+ +GDY++A YY +++ E +Y LG K GD+ A+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAI 63
Query: 318 TNFEKVLEIYPDNCETLKALGH 339
++K LE+ P+N E + LG+
Sbjct: 64 EYYQKALELDPNNAEAKQNLGN 85
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 145 QVHPSCPGAIRLGIGLCRYKLG 166
++ P+ A + +G + K G
Sbjct: 71 ELDPNNAEA-KQNLGNAKQKQG 91
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 205
+ P +G YK G +A + +Q+AL+LDP N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---Y 59
Query: 206 RKGMEKMQRAFEIYPYCAMALNYLAN 231
+ +E Q+A E+ P A A L N
Sbjct: 60 DEAIEYYQKALELDPNNAEAKQNLGN 85
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P+N + + G A QK
Sbjct: 68 KALELDPNNAEAKQNLGNAKQK 89
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 328 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALD 385
P N E LG+ Y + G ++A E +KA ++DP +A+A+ +LG D A++
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 386 AFKTARTL 393
++ A L
Sbjct: 65 YYQKALEL 72
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 51 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
LG KQ + +E A +YY KA +D + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 111 EADRDNVPA 119
E D +N A
Sbjct: 71 ELDPNNAEA 79
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y +G + GDF A+ ++KVL+ P+N ETL LG Y+ +G A E L+K
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 360 IDPRDAQAFIDLGEL-LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 418
+D A+A+ LG + + AA+DA + A L V + +G+++ GE
Sbjct: 68 LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122
Query: 419 FESAHQSFKDAL 430
+ A ++++ +
Sbjct: 123 HDKAIEAYEKTI 134
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 80 MHEPST-WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138
M E +T ++ G KG+ + A A+K VL+AD +NV LL + G +D++E
Sbjct: 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIE 60
Query: 139 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195
K+ + + + A + +G + + + A A QRA+ L+ +A L ++
Sbjct: 61 SLKKFVVLDTTSAEAYYI-LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA--VMDLQ-ANEAAGIRKGME 210
I + IG + G A +A+++ L+ DP NVE L+ L MD+ N+A +E
Sbjct: 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDA------IE 60
Query: 211 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 270
+++ + A A L + F + + A+A+ + +YY L Y
Sbjct: 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT---VYADAYYKLGLVY 117
Query: 271 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304
S G+++KA A K I+ FI Y +G
Sbjct: 118 DSMGEHDKA---IEAYEKTISIKPGFIRAYQSIG 148
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 360 IDPR 363
+DPR
Sbjct: 66 LDPR 69
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LG A + +G Y +++E+Y++AL++ P A +G YK G +A + +Q+AL+
Sbjct: 9 LGNAY--YKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 181 LDP 183
LDP
Sbjct: 66 LDP 68
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
+ ++YNL +Y+ +GDY++A YY +++ + E +Y LG K GD+ A+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEY 59
Query: 320 FEKVLEIYP 328
++K LE+ P
Sbjct: 60 YQKALELDP 68
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 388
+ E LG+ Y + G ++A E +KA ++DPR A+A+ +LG D A++ ++
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 389 TARTL 393
A L
Sbjct: 62 KALEL 66
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
W G +G+ ++A ++ LE D + A + +G Y +++E+Y++AL
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 145 QVHP 148
++ P
Sbjct: 65 ELDP 68
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
+G YK G +A + +Q+AL+LDP + EA L + + + +E Q+A E
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALE 65
Query: 218 IYP 220
+ P
Sbjct: 66 LDP 68
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 36/252 (14%)
Query: 130 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQRALQLDPENVEA 188
+ ++ +LE K+AL+V P+ + +GLC R ++ Q+ KA R D V+
Sbjct: 262 KNSWNKALELLKKALEVTPT-SSFLHHQMGLCYRAQMIQIKKATH--NRPKGKDKLKVDE 318
Query: 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 248
L++ A+ +A A E A A LAN + GQ+ E +
Sbjct: 319 LISSAIFHFKA---------------AMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRK 363
Query: 249 ALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305
AL +T+ + H +Y + +H K + A +Y+ ++K ++
Sbjct: 364 ALRLENITDDHKHQIHYHYGRFQEFHRKSE-NTAIHHYLEALKVKDR-----------SP 411
Query: 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
++ KL L+ K L + ++L ALG +Y G+ +A E KA KIDP +A
Sbjct: 412 LRTKLTSALKKLST--KRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENA 469
Query: 366 QAFIDLGELLIS 377
+ L EL +S
Sbjct: 470 EFLTALCELRLS 481
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 150 CPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV----MDLQANEAAG 204
CP G L ++ KA+ AF++AL+++P+N E + A+ +D E +
Sbjct: 137 CPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSV 196
Query: 205 IRKGMEKMQRAFEIYP-----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 259
+ +++A + P +AL H G+ ++ E L + + ++
Sbjct: 197 KSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQIS--------SQ 248
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL---------------- 303
+ A+ Y K + KA L + E+ F+ GL
Sbjct: 249 PYVLRYAAKFYRRKNSWNKA-LELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNR 307
Query: 304 --GQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
G+ +LK+ + SA+ +F+ +E L ++Y + GQ A+++ RKA ++
Sbjct: 308 PKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRL 367
Query: 361 D 361
+
Sbjct: 368 E 368
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 133/329 (40%), Gaps = 32/329 (9%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
G+ LLA G++ A S F ++ D DN A +A V G+ +L + +Q+
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 197
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 93 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEXQRLRSQAL 151
Query: 198 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257
A + + + + E+ + A A F G+ + A + N
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 310
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 211 --TEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267
Query: 311 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKI---DPR 363
G + A + +E V + P E T+++ I + EK E +R +++ +P
Sbjct: 268 IRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQXEPD 327
Query: 364 DAQAFIDLGE-LLISSDTGAALDAFKTAR 391
+ A D E LI A+ ++TA+
Sbjct: 328 NVNALKDRAEAYLIEEXYDEAIQDYETAQ 356
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 337 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 396
LG Y+Q G E+A+ LRKA +IDP A A L ++ ++ L + + L
Sbjct: 56 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEMEPKLADEEYRKAL--- 111
Query: 397 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456
A + VLNN G +E+ +E A+Q +A D TL +++ + S+
Sbjct: 112 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQM 167
Query: 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506
K Q FE + L N+ +V +A LL + + V A Y L
Sbjct: 168 KKPAQAKEYFEKS---LRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 214
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 34/251 (13%)
Query: 130 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189
+ ++ +LE K+AL+V P+ + GLC Y+ + + R D V+ L
Sbjct: 262 KNSWNKALELLKKALEVTPT-SSFLHHQXGLC-YRAQXIQIKKATHNRPKGKDKLKVDEL 319
Query: 190 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249
++ A+ +A A E A A LAN + GQ+ E + A
Sbjct: 320 ISSAIFHFKA---------------AXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKA 364
Query: 250 LA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306
L +T+ + H +Y + +H K + A +Y+ ++K ++ +
Sbjct: 365 LRLENITDDHKHQIHYHYGRFQEFHRKSE-NTAIHHYLEALKVKDR-----------SPL 412
Query: 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
+ KL L+ K L + ++L ALG +Y G+ +A E KA KIDP +A+
Sbjct: 413 RTKLTSALKKLST--KRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAE 470
Query: 367 AFIDLGELLIS 377
L EL +S
Sbjct: 471 FLTALCELRLS 481
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 134/329 (40%), Gaps = 32/329 (9%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
G+ LLA G++ A S F ++ D DN A +A V G+ +L + +Q+
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 197
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 93 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 198 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257
A + + + + E+ + A A F G+ + A + N
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 310
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 211 --TEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267
Query: 311 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKI---DPR 363
G + A + +E V++ P E T+++ I + EK E +R +++ +P
Sbjct: 268 IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 364 DAQAFIDLGE-LLISSDTGAALDAFKTAR 391
+ A D E LI A+ ++TA+
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
PT + S NLA +G+ E+A Y +++ EF + L V + G + A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEA 62
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
L ++++ + I P + +G+ ++ ++ A + +A +I+P A A +L I
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS--I 120
Query: 377 SSDTGAALDAFKTARTLLK 395
D+G +A + RT LK
Sbjct: 121 HKDSGNIPEAIASYRTALK 139
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
L ++ + G+ A+ + K LE++P+ L + Q G++++A ++A +I P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 363 RDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421
A A+ ++G L D AL + A + + +N+ IH + G
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA-----DAHSNLASIHKDSGNIPE 129
Query: 422 AHQSFKDAL 430
A S++ AL
Sbjct: 130 AIASYRTAL 138
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 96 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155
+G +E+A ++ LE + A A V +G+ ++L YK A+++ P+ A
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215
+G ++ + A Q + RA+Q++P +A LA + ++ I + + + A
Sbjct: 82 -NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH---KDSGNIPEAIASYRTA 137
Query: 216 FEIYP-----YCAMA 225
++ P YC +A
Sbjct: 138 LKLKPDFPDAYCNLA 152
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 544
N+ L+++ D A Y + + DA+ LA+I K N+ +I ALK+
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 545 GKYPNALSMLGDLELKNDDWVKAKETFR 572
+P+A L DW E +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMK 169
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 337 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 396
LG Y+Q G E+A+ LRKA +IDP A A L ++ ++ L + + L
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEXEPKLADEEYRKAL--- 98
Query: 397 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456
A + VLNN G +E+ +E A+Q +A D TL +++ + S+
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQX 154
Query: 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506
K Q FE + L N+ +V A LL + + V A Y L
Sbjct: 155 KKPAQAKEYFEKS---LRLNRNQPSVALEXADLLYKEREYVPARQYYDLF 201
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
Y +L + +E F +++ KA ++ P T+ +GQ+ + + A F+
Sbjct: 275 YIFLALTLADKENSQEFF----KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 330
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------------- 153
+ +NV + AC+ + +G++++S F+ P+ P
Sbjct: 331 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 390
Query: 154 -------------------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194
I +GIG K L ARQ+ Q QLD E A + L
Sbjct: 391 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL--ARQSSQDPTQLDEEKFNAAIKLLT 448
Query: 195 ----MDLQANEA----AGIRKGMEKMQRAFEIY 219
+D ++ +A A ++ MEK+ A E++
Sbjct: 449 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 481
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 147/382 (38%), Gaps = 37/382 (9%)
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
++F A +YY A +D +EP + ++ G++E+ LE D+ ALL
Sbjct: 35 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 94
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGA---IRLGIGLCRYKLGQLGKARQAFQ-RA 178
+A + G ++D++ F L ++ GA L L + + L + + R
Sbjct: 95 RASANESLGNFTDAM-FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 153
Query: 179 LQLDPENVEALVALAVMDLQ-----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 233
Q+ P N + D N ++ + A + Y A YL +
Sbjct: 154 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL-YSATDEGYLVAND 212
Query: 234 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHS-KGDYEKAGLYYMASVKEI 290
T + L A T P + ++ L + +H K + A + S+
Sbjct: 213 LLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 269
Query: 291 NKPHEFIFPYYGLGQVQLKLGDFRSA---LTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347
P+ +IF + L L D ++ F+K +++ P+ T G +Y L
Sbjct: 270 PTPNSYIF-------LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 322
Query: 348 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI---E 404
+ A+E +KA ++P + +I L LL +AF L EVP E
Sbjct: 323 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 382
Query: 405 VLNNIGVIHFEKGEFESAHQSF 426
+L ++G+F++A + +
Sbjct: 383 ILT-------DRGDFDTAIKQY 397
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
Y +L + +E F +++ KA ++ P T+ +GQ+ + + A F+
Sbjct: 279 YIFLALTLADKENSQEFF----KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------------- 153
+ +NV + AC+ + +G++++S F+ P+ P
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394
Query: 154 -------------------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194
I +GIG K L ARQ+ Q QLD E A + L
Sbjct: 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL--ARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 195 ----MDLQANEA----AGIRKGMEKMQRAFEIY 219
+D ++ +A A ++ MEK+ A E++
Sbjct: 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 147/382 (38%), Gaps = 37/382 (9%)
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
++F A +YY A +D +EP + ++ G++E+ LE D+ ALL
Sbjct: 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGA---IRLGIGLCRYKLGQLGKARQAFQ-RA 178
+A + G ++D++ F L ++ GA L L + + L + + R
Sbjct: 99 RASANESLGNFTDAM-FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157
Query: 179 LQLDPENVEALVALAVMDLQ-----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 233
Q+ P N + D N ++ + A + Y A YL +
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL-YSATDEGYLVAND 216
Query: 234 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHS-KGDYEKAGLYYMASVKEI 290
T + L A T P + ++ L + +H K + A + S+
Sbjct: 217 LLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 291 NKPHEFIFPYYGLGQVQLKLGDFRSA---LTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347
P+ +IF + L L D ++ F+K +++ P+ T G +Y L
Sbjct: 274 PTPNSYIF-------LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326
Query: 348 EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI---E 404
+ A+E +KA ++P + +I L LL +AF L EVP E
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386
Query: 405 VLNNIGVIHFEKGEFESAHQSF 426
+L ++G+F++A + +
Sbjct: 387 ILT-------DRGDFDTAIKQY 401
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
Y Y+ I + + E++ Y++KA ++D + S + +GQ+ +QA F
Sbjct: 273 YIYMALIMADRNDSTEYY----NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 151
E D +N+ + AC+ + ++ D + A + P P
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 23 SPEIDEYYADVRYER-------------IAILNAL-GVYY---TYLGKIETKQREKE-EH 64
+PE+ ++A++ ++ I + N L G+Y +GK R E+
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 106
FI AT KAS++D +G Q+ L + ++++A + F
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 318 TNFEKVLEIYPDNCETLKALGHIYVQLGQIE----------------KAQELLRKAAKID 361
+F+K L+ Y E L IYV + + +A LL KA+K+D
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 362 PRDAQAFIDLGEL-LISSDTGAALDAFKTARTLLKKAGEEV 401
PR QA I L ++ L D A+ F+ + L + E++
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
F +Y D++++Y AL++ + C +G L K + +AL+L P+ +
Sbjct: 17 FRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK 74
Query: 188 ALVALAVMDLQANEAAG 204
L+ A ANE G
Sbjct: 75 VLLRRA----SANEGLG 87
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 123/310 (39%), Gaps = 31/310 (10%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
G+ LLA G++ A S F ++ D DN A +A V G+ +L + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 197
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 70 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQAL 128
Query: 198 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257
A + A + + + E+ + A A F G+ + A +
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE---PRKAISDLKAASKLKS 185
Query: 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 310
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 186 DNTEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244
Query: 311 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKI---DPR 363
G + A + +E V + P E T+++ I + EK E +R +++ +P
Sbjct: 245 IRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQXEPD 304
Query: 364 DAQAFIDLGE 373
+ A D E
Sbjct: 305 NVNALKDRAE 314
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 293 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352
P +I YY V L G ++AL + KV+ + D GH+ ++ G++++A++
Sbjct: 34 PDNYI-AYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAED 92
Query: 353 LLRKAAKIDPRDAQAFIDLGELLISSDT-----GAALDAFKTA 390
+K K +P + Q + L+ +D ALDAF A
Sbjct: 93 DFKKVLKSNPSE-QEEKEAESQLVKADEXQRLRSQALDAFDGA 134
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
D+ +A+T +K+LE+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193
Query: 371 LGEL 374
+ L
Sbjct: 194 ISTL 197
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQAC 125
A +Y+KA +D + + G G + + K ++A F+ L A +N + +LG
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 126 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185
V+ + + +L + +RA++++ + A R G+C G L +A F + DP +
Sbjct: 136 VKLEQPKL--ALPYLQRAVELNENDTEA-RFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192
Query: 186 VEALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227
+A V + N K +E + +A +I P +AL+
Sbjct: 193 ADAFYNAGVTYAYKENR----EKALEMLDKAIDIQPDHMLALH 231
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 333
GDYEKA + +++E NK E PY + + + AL ++K LE+
Sbjct: 37 GDYEKAAEAFTKAIEE-NK--EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
G++YV ++A+++ KA + + F LG +L+
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
Y N A S + E+A +Y K + YYG G V + ++ A FEK
Sbjct: 60 YINFANLLSSVNELERALAFY---DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
L +N + LG + V+L Q + A L++A +++ D +A G L
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G K G + A+ E+V + + E LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFES 421
+ + LG T + + A LL K E P+ V +GV G F+
Sbjct: 75 NIKVATVLGL------TYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDE 128
Query: 422 AHQSFKDALG 431
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG +K G E+ + PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANP 107
Query: 363 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 VNFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAYSYEQMGSH 160
Query: 420 ESAHQSFKDA 429
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ LG LG F A+ +F+ L + P+ + +A+ + Y Q+G E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANEL 173
Query: 361 DPRDA 365
D R A
Sbjct: 174 DERSA 178
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFES 421
+ + LG T + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGL------TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDE 128
Query: 422 AHQSFKDALG 431
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 363 RDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421
+ LG L + A+D+FK A L G +V I + + G E
Sbjct: 108 INFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRHEE 162
Query: 422 AHQSFKDA 429
A FK A
Sbjct: 163 ALPHFKKA 170
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 753
N +L L T+ + +++ L++ P N+ +RF GVA++
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLG 124
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 361 D 361
D
Sbjct: 174 D 174
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFES 421
+ + LG T + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGL------TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 422 AHQSFKDALG 431
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 363 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 INFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH 160
Query: 420 ESAHQSFKDA 429
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 753
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 361 D 361
D
Sbjct: 174 D 174
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G K G + A+ E+V + + + LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFES 421
+ + LG + + + A LL K E PI V +GV G F+
Sbjct: 75 NVKVATVLGLTYVQ------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 422 AHQSFKDALG 431
A SFK ALG
Sbjct: 129 AIDSFKIALG 138
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 363 RDAQAFIDLGELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ LG L + G A+D+FK A L G +V I + + G
Sbjct: 108 INFNVRFRLGVAL--DNLGRFDEAIDSFKIALGLRPNEG-----KVHRAIAFSYEQMGRH 160
Query: 420 ESAHQSFKDA 429
E A FK A
Sbjct: 161 EEALPHFKKA 170
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 753
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 361 D 361
D
Sbjct: 174 D 174
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ + L
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 372 GELLISSD-TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
G L + + ALDA+ R L G + V+ N+ V + +++ A + A+
Sbjct: 213 GATLANGNRPQEALDAYN--RALDINPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 33/141 (23%)
Query: 322 KVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLG-ELLISSD 379
K++++YP N + A+G Y+ +G + E A+ L KA ++ A+I G + S+
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 380 TGAALDAFKTARTLLKKA------------------------------GEEVPIEVLNNI 409
A A+ TA L K E P V + +
Sbjct: 141 HDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-VXHEV 199
Query: 410 GVIHFEKGEFESAHQSFKDAL 430
GV+ F+ GE+++A + F DAL
Sbjct: 200 GVVAFQNGEWKTAEKWFLDAL 220
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Query: 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 281
C + Y+ + T L E+ AL++ P H +A G+++ A
Sbjct: 158 CHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVXHEVGVVA---FQNGEWKTAEK 214
Query: 282 YYMASVKEINK-PHEFIFPYY-----GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 335
+++ ++++I +E + LG V KL + AL + L + P N T
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274
Query: 336 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
A+G+I+ G E A + A + D + LG +
Sbjct: 275 AIGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLGHCI 314
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 43 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQA 102
A+G YY +G K EH A +Y +KA+ ++ W+ G + E +QA
Sbjct: 95 AVGCYYLXVG-------HKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 103 SSAFKIVLEADRD-NVPAL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160
+A+ + + ++P L +G N + ++ F+ +AL + P P + +G+
Sbjct: 145 XAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAE--RFFSQALSIAPEDP-FVXHEVGV 201
Query: 161 CRYKLGQLGKARQAFQRALQ 180
++ G+ A + F AL+
Sbjct: 202 VAFQNGEWKTAEKWFLDALE 221
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELLISS 378
F + L I P++ +G + Q G+ + A++ A KI + +D E L+++
Sbjct: 182 FSQALSIAPEDPFVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241
Query: 379 ---------DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 429
ALD + A L+ + + IG IH G FE+A F A
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNAS-----TYSAIGYIHSLXGNFENAVDYFHTA 296
Query: 430 LG----DGIWLTLLDSKTKTYVIDASASM 454
LG D +T L + Y+ D+ A +
Sbjct: 297 LGLRRDDTFSVTXLGHCIEXYIGDSEAYI 325
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ + L
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Query: 372 GELLISSD-TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
G L + + ALDA+ R L G + V+ N+ V + +++ A + A+
Sbjct: 213 GATLANGNRPQEALDAYN--RALDINPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 34/140 (24%)
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-ELLISSDTG 381
+++ +P+ T A+G Y+ + +I +A+ K++ +DP+ A+I I +
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424
Query: 382 AALDAFKTARTLLKKAGEEVPI-------------------------------EVLNNIG 410
A+ A+ TA L + G +P +LN +G
Sbjct: 425 QAISAYTTAARLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482
Query: 411 VIHFEKGEFESAHQSFKDAL 430
V+ F K + ++A F++AL
Sbjct: 483 VVAFNKSDMQTAINHFQNAL 502
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 95
E+ A+G+YY + KI +R Y++K+S +D W+G
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARR-----------YFSKSSTMDPQFGPAWIGFAHSFAI 419
Query: 96 KGEVEQASSAF 106
+GE +QA SA+
Sbjct: 420 EGEHDQAISAY 430
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 337 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLK 395
LG ++QLG I A E L+ + + D +LG + + SD A++ F+ A L+K
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 396 K--AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 447
K + E+ N+G + + +++A DAL G+ L+ D+ T +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAA----IDALNQGLLLSTNDANVHTAI 556
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G Q+K+ +F +A+ + K +E+ P N Y +LG A + +A IDP
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 364 DAQAFIDLGELLISS 378
++A+ +G L +SS
Sbjct: 79 YSKAYGRMG-LALSS 92
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 131 GRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189
G Y+ +++ +RA+ + P+ A R+G+ L L + +A +++AL+LDP+N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALS--SLNKHVEAVAYYKKALELDPDNETYK 117
Query: 190 VALAVMDLQANEA 202
L + +L+ EA
Sbjct: 118 SNLKIAELKLREA 130
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 125 CVEFNRGRYSDSLEFYKRAL--QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
C NR ++S+ ++ +AL +P+ P L G+C K GQ G A +R+L
Sbjct: 87 CGRLNRP--AESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
Query: 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
P+ A LA + A + +K Q E+
Sbjct: 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
D+R A + E L+ P N IY L +KAQE R+A I P A+ +
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 372 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI--GVIHFEKGEFESAHQSFKDA 429
G L A + L A P + N+ G+ ++G+F A K +
Sbjct: 83 GWFLCGRLNRPAESMAYFDKAL---ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139
Query: 430 LG 431
L
Sbjct: 140 LA 141
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329
YY +G KLGD++ AL N++ +E+ PD
Sbjct: 38 YYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 188 ALVALAVMDL 197
VMD+
Sbjct: 71 LQARKMVMDI 80
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
+G +LK+ D++ A+ + + LEI P N + L + L + ++A L+KA +I P
Sbjct: 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338
Query: 363 RD 364
D
Sbjct: 339 ED 340
>pdb|1OLP|A Chain A, Alpha Toxin From Clostridium Absonum
pdb|1OLP|B Chain B, Alpha Toxin From Clostridium Absonum
pdb|1OLP|C Chain C, Alpha Toxin From Clostridium Absonum
pdb|1OLP|D Chain D, Alpha Toxin From Clostridium Absonum
Length = 370
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 186 VEALVALAVMDLQANEAAGIR-------KGMEKMQRAFEIYPYCAMALNYLANHFFF--T 236
V + + DL +E IR K + K Q Y A + +HF+ T
Sbjct: 15 VTQAIEMLKHDLSKDEPEAIRNDLSILEKNLHKFQLGSTFPDYDPNAYSLYQDHFWDPDT 74
Query: 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKP 293
+F + + AV ++ +++ + LA++ KG+YEKA Y M ++N P
Sbjct: 75 DHNFTQDNKWYLSYAVPDNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHYFGDLNTP 134
Query: 294 H 294
+
Sbjct: 135 Y 135
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 306 VQL-KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
VQL LG + +ALT FE+ L+ P + E L L ++LG + A E + PR
Sbjct: 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72
Query: 365 AQAFIDLGELLI-----SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI--GVIHFEKG 417
++ L E + + D + A ++LK A P ++ G+++ G
Sbjct: 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 418 EFESAHQSFKDALG 431
E + A S K AL
Sbjct: 133 ERDKAEASLKQALA 146
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 45/216 (20%)
Query: 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213
+RLG+ L Y LG+ A F+RAL+ +P++ EAL LA L+ + +E +
Sbjct: 9 LRLGVQL--YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL---VNPALENGK 63
Query: 214 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273
P YL + S +Y L Y
Sbjct: 64 TLVARTP------RYLGGYMVL------------------------SEAYVAL---YRQA 90
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGL-----GQVQLKLGDFRSALTNFEKVLEIYP 328
D E+ G Y+ + K E + P Y G V LG+ A + ++ L +
Sbjct: 91 EDRER-GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E 148
Query: 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
D E AL +Y+ +G++++A KA + P+D
Sbjct: 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFES 421
+AQA + G+ L D A LL KA + P +E N +G ++++KG+ S
Sbjct: 101 EAQALMLKGKAL-----NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 422 AHQSFKDAL 430
AH F AL
Sbjct: 156 AHTCFSGAL 164
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 105/267 (39%), Gaps = 26/267 (9%)
Query: 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 209
PGA G L R K G L + A+ DP + EA L + + NE A I
Sbjct: 66 PGAFEEG--LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA-- 121
Query: 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 269
+QR E+ P AL LA + T + E P + N S
Sbjct: 122 --LQRCLELQPNNLKALMALAVSYTNTSHQ---QDACEALKNWIKQNPKYKYLVKNKKGS 176
Query: 270 YHSKGDYEKAGL--YYMASVKEI-----NKPHEFIFP--YYGLGQVQLKLGDFRSALTNF 320
K+ + + VKE+ ++ + I P GLG + G+F A+ F
Sbjct: 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 380
L + P++ LG + E+A E +A +I P ++ +LG I +
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI--NL 294
Query: 381 GA---ALDAFKTARTLLKKA--GEEVP 402
GA A+ F TA +L +K+ ++VP
Sbjct: 295 GAYREAVSNFLTALSLQRKSRNQQQVP 321
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG Q + + ++A+ ++ LE+ P+N + L AL Y + A E L+ K +P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 363 ------RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVI 412
++ + L + S +++ + + L +A G+ + ++ +GV+
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSV--LEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 413 HFEKGEFESAHQSFKDAL 430
GEF A +F AL
Sbjct: 223 FHLSGEFNRAIDAFNAAL 240
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTN-------FEKVLEI 326
+ E+ G Y M ++E+ + ++ + G+G L +G FR ++N FE L +
Sbjct: 294 EVEEKGNYLMKKLQEMKEEYDVVADVRGMG---LMIGIQFREEVSNREVATKCFENKLLV 350
Query: 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKA 357
P T++ L + V+ G+I+ A E L+K
Sbjct: 351 VPAGNNTIRFLPPLTVEYGEIDLAVETLKKV 381
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDN 330
G+ L + DF A +F+KVL++YP+N
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDN 330
G+ L + DF A +F+KVL++YP+N
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 350
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 7 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 59
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 350
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 535 ELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 589
E E + VNG N + G LK+ D+ +R S+ G Y + L
Sbjct: 35 EFAAEGVIVNGTQFKDTSGNVIHAHGGGMLKHGDYYYWYGEYRDDSNLFLGVSCYRSKDL 94
Query: 590 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635
NW Y + + AP+L ++E+ K +Y + ++ NG
Sbjct: 95 VNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFVMWMHWENG 140
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 116
K++ F A ++Y+KA +D + V + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 117 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155
A +G + F +Y D++ FY ++L H + P ++
Sbjct: 76 RMIAYAYARIGNS--YFKEEKYKDAIHFYNKSLAEHRT-PKVLK 116
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 309 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 368
++ +F+ A + F+K D C T + LG + LGQ EL ++ID RD
Sbjct: 8 QVTEFKEAFSLFDK----DGDGCITTRELGTVMRSLGQNPTEAELRDMMSEID-RDGNGT 62
Query: 369 IDLGELL 375
+D E L
Sbjct: 63 VDFPEFL 69
>pdb|1YY8|B Chain B, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|D Chain D, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|D Chain D, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 221
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234
F L ++ +N ++ V + LQ+N+ A IY YCA AL Y F
Sbjct: 63 FTSRLSINKDNSKSQVFFKMNSLQSNDTA--------------IY-YCARALTYYDYEFA 107
Query: 235 FTGQHFLVEQLTETALAVTNHGPT 258
+ GQ LV T A + GP+
Sbjct: 108 YWGQGTLV-----TVSAASTKGPS 126
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
G + ++ A+ + + L I P N L Y GQ EKA E A +DP+
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 364 DAQAFIDLG 372
++A+ LG
Sbjct: 78 YSKAWSRLG 86
>pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1GYG|B Chain B, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1CA1|A Chain A, Alpha-Toxin From Clostridium Perfringens
Length = 370
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 190 VALAVMDLQANEAAGIRKGMEKMQRAF------EIYP-YCAMALNYLANHFFF--TGQHF 240
V++ DL NE +RK +E ++ YP Y A + +HF+ T +F
Sbjct: 19 VSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNF 78
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPH 294
+ A ++ + G ++ + LAR +G+Y++A Y M +I+ P+
Sbjct: 79 SKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPY 135
>pdb|1QM6|A Chain A, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QM6|B Chain B, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QMD|A Chain A, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|1QMD|B Chain B, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|2WXT|A Chain A, Clostridium Perfringens Alpha-Toxin Strain Nctc8237
Length = 370
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 190 VALAVMDLQANEAAGIRKGMEKMQRAF------EIYP-YCAMALNYLANHFFF--TGQHF 240
V++ DL NE +RK +E ++ YP Y A + +HF+ T +F
Sbjct: 19 VSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNF 78
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPH 294
+ A ++ + G ++ + LAR +G+Y++A Y M +I+ P+
Sbjct: 79 SKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPY 135
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 936 MDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAAR 995
MD E E D S Y P ++ND D +EE +ND + +++ D+ E A +
Sbjct: 50 MDNPEHKEFRDISAPYFLP-SKINDYKDFIEETSNDLI--KNIDNKDIISEYAVRLPVNI 106
Query: 996 RRRALSESDDDEPFERQLRD 1015
+ L D D P + D
Sbjct: 107 ISKILGIPDSDMPLFKLWSD 126
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147
KG KG+ A + ++ D +N A + NR L ++RAL
Sbjct: 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALD-- 68
Query: 148 PSCPGAIRLGIGL---------CRYKLGQLGKARQAFQRALQLDPENVEA 188
C IRL C + + KA++A++ ALQ+DP N EA
Sbjct: 69 -DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 256 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 315
P + N Y KGDY A +Y +VK P I Y KL +F+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQR 65
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
AL + + + + + V + + KAQ A ++DP + +A
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 116
K++ F A ++Y+KA +D + + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 117 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
A +G + F +Y D++ FY ++L H +
Sbjct: 76 RQIAKAYARIGNS--YFKEEKYKDAIHFYNKSLAEHRT 111
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 116
K++ F A ++Y+KA +D + + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 117 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
A +G + F +Y D++ FY ++L H +
Sbjct: 76 RQIAKAYARIGNSY--FKEEKYKDAIHFYNKSLAEHRT 111
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,690,302
Number of Sequences: 62578
Number of extensions: 1153170
Number of successful extensions: 3711
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3281
Number of HSP's gapped (non-prelim): 346
length of query: 1043
length of database: 14,973,337
effective HSP length: 109
effective length of query: 934
effective length of database: 8,152,335
effective search space: 7614280890
effective search space used: 7614280890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)