Query 001618
Match_columns 1043
No_of_seqs 1434 out of 4735
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 8E-105 2E-109 882.9 92.8 955 1-1009 47-1017(1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 8.7E-51 1.9E-55 519.3 82.1 678 1-749 165-881 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-50 9.3E-55 513.0 82.2 680 1-749 96-780 (899)
4 KOG2002 TPR-containing nuclear 100.0 1.8E-45 3.9E-50 410.2 70.5 582 65-718 146-763 (1018)
5 PRK11447 cellulose synthase su 100.0 1.3E-42 2.8E-47 442.3 75.5 623 37-740 27-706 (1157)
6 PRK11447 cellulose synthase su 100.0 7.3E-42 1.6E-46 435.4 76.0 642 2-733 35-739 (1157)
7 KOG4626 O-linked N-acetylgluco 100.0 3.8E-44 8.2E-49 378.3 36.3 454 62-573 61-515 (966)
8 KOG4626 O-linked N-acetylgluco 100.0 3.1E-43 6.7E-48 371.4 39.4 460 82-685 47-506 (966)
9 PRK09782 bacteriophage N4 rece 100.0 1.9E-36 4.1E-41 366.2 69.5 614 67-749 62-721 (987)
10 PRK09782 bacteriophage N4 rece 100.0 1.2E-34 2.6E-39 350.5 67.3 592 83-749 44-687 (987)
11 PLN03077 Protein ECB2; Provisi 100.0 3.5E-33 7.7E-38 348.3 63.5 698 3-820 59-766 (857)
12 TIGR00990 3a0801s09 mitochondr 100.0 2.5E-31 5.5E-36 318.7 55.2 436 84-580 128-574 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 3.4E-31 7.4E-36 317.6 55.0 444 40-549 129-577 (615)
14 KOG2076 RNA polymerase III tra 100.0 1.4E-28 3.1E-33 274.3 58.3 648 63-732 153-893 (895)
15 KOG0495 HAT repeat protein [RN 100.0 2.9E-27 6.4E-32 252.7 65.1 597 62-744 264-890 (913)
16 PLN03077 Protein ECB2; Provisi 100.0 2.4E-28 5.3E-33 304.9 61.6 618 3-734 94-720 (857)
17 KOG2076 RNA polymerase III tra 100.0 3.1E-26 6.8E-31 255.7 58.5 626 2-695 146-892 (895)
18 KOG0495 HAT repeat protein [RN 100.0 3E-25 6.5E-30 237.4 62.0 564 97-746 265-858 (913)
19 PRK10049 pgaA outer membrane p 100.0 7E-27 1.5E-31 285.0 49.1 435 69-552 2-465 (765)
20 KOG2376 Signal recognition par 100.0 2.5E-27 5.4E-32 252.2 36.4 465 226-749 15-502 (652)
21 PRK10049 pgaA outer membrane p 100.0 9.8E-26 2.1E-30 274.9 48.4 410 42-518 19-465 (765)
22 PRK15174 Vi polysaccharide exp 100.0 9.1E-26 2E-30 269.1 46.4 337 261-662 43-384 (656)
23 PRK15174 Vi polysaccharide exp 100.0 1.2E-25 2.6E-30 268.1 47.0 325 62-397 55-385 (656)
24 KOG0547 Translocase of outer m 100.0 7.7E-25 1.7E-29 227.6 40.1 429 118-660 116-567 (606)
25 KOG0547 Translocase of outer m 100.0 5.4E-25 1.2E-29 228.7 37.2 427 85-579 117-568 (606)
26 PLN03218 maturation of RBCL 1; 99.9 4.2E-22 9.2E-27 243.5 65.1 544 67-699 355-910 (1060)
27 PLN03218 maturation of RBCL 1; 99.9 9.8E-22 2.1E-26 240.4 66.7 545 100-735 354-910 (1060)
28 PLN03081 pentatricopeptide (PP 99.9 7.9E-24 1.7E-28 257.9 47.2 445 225-749 89-538 (697)
29 KOG2003 TPR repeat-containing 99.9 4.5E-24 9.8E-29 218.6 36.8 460 62-587 214-698 (840)
30 PRK14574 hmsH outer membrane p 99.9 1.6E-22 3.5E-27 240.5 54.1 469 77-583 28-519 (822)
31 KOG1127 TPR repeat-containing 99.9 1.8E-22 3.9E-27 226.0 48.8 610 64-747 473-1188(1238)
32 KOG2003 TPR repeat-containing 99.9 7.5E-24 1.6E-28 217.0 33.4 478 84-644 202-708 (840)
33 PRK14574 hmsH outer membrane p 99.9 2.5E-22 5.4E-27 238.9 51.3 443 60-551 45-521 (822)
34 PLN03081 pentatricopeptide (PP 99.9 1.9E-22 4E-27 245.9 51.0 462 85-660 89-558 (697)
35 KOG1173 Anaphase-promoting com 99.9 2.5E-22 5.4E-27 213.5 42.2 464 205-749 32-533 (611)
36 KOG1127 TPR repeat-containing 99.9 9.7E-22 2.1E-26 220.2 47.3 603 62-736 381-1069(1238)
37 KOG1173 Anaphase-promoting com 99.9 3.6E-22 7.7E-27 212.3 40.0 447 62-557 29-532 (611)
38 KOG1155 Anaphase-promoting com 99.9 6.4E-21 1.4E-25 197.6 42.7 425 85-577 80-536 (559)
39 KOG1156 N-terminal acetyltrans 99.9 2.4E-20 5.2E-25 201.4 48.7 525 225-825 9-559 (700)
40 KOG1126 DNA-binding cell divis 99.9 1.9E-22 4.2E-27 219.4 30.3 314 34-366 313-626 (638)
41 KOG1156 N-terminal acetyltrans 99.9 6.9E-19 1.5E-23 190.3 57.1 450 82-578 6-469 (700)
42 KOG1155 Anaphase-promoting com 99.9 7E-20 1.5E-24 189.9 46.1 376 81-513 162-540 (559)
43 KOG4162 Predicted calmodulin-b 99.9 2.7E-18 5.9E-23 189.5 59.2 413 269-744 293-793 (799)
44 KOG0548 Molecular co-chaperone 99.9 7.4E-21 1.6E-25 202.0 37.2 450 88-655 7-485 (539)
45 KOG1915 Cell cycle control pro 99.9 4.7E-19 1E-23 183.7 47.3 470 69-592 59-549 (677)
46 PRK11788 tetratricopeptide rep 99.9 3.5E-20 7.6E-25 211.5 41.7 301 83-393 35-347 (389)
47 KOG0624 dsRNA-activated protei 99.9 6.1E-20 1.3E-24 182.7 36.2 346 78-554 33-381 (504)
48 KOG1126 DNA-binding cell divis 99.9 1.8E-21 3.8E-26 212.0 26.6 290 132-436 334-624 (638)
49 PRK11788 tetratricopeptide rep 99.9 1.4E-20 2.9E-25 214.9 33.8 272 299-661 37-313 (389)
50 KOG4162 Predicted calmodulin-b 99.9 2.5E-18 5.4E-23 189.7 44.6 436 80-583 320-789 (799)
51 KOG0624 dsRNA-activated protei 99.9 2.3E-19 5.1E-24 178.6 30.8 304 63-372 52-382 (504)
52 KOG0548 Molecular co-chaperone 99.9 1.7E-18 3.7E-23 184.2 39.1 437 265-751 7-472 (539)
53 KOG1174 Anaphase-promoting com 99.9 5E-18 1.1E-22 173.4 39.9 435 60-557 54-514 (564)
54 KOG1915 Cell cycle control pro 99.9 3.3E-16 7.1E-21 162.8 53.3 467 103-630 59-541 (677)
55 KOG1174 Anaphase-promoting com 99.8 3.2E-17 6.9E-22 167.6 40.4 314 265-642 201-517 (564)
56 KOG2047 mRNA splicing factor [ 99.8 1.5E-14 3.2E-19 156.2 53.7 606 62-723 81-712 (835)
57 KOG1129 TPR repeat-containing 99.8 3.7E-18 8E-23 169.1 24.1 250 480-748 223-472 (478)
58 TIGR00540 hemY_coli hemY prote 99.8 1.2E-16 2.5E-21 181.4 38.1 305 85-396 86-402 (409)
59 KOG2047 mRNA splicing factor [ 99.8 8E-14 1.7E-18 150.6 56.6 593 67-735 44-688 (835)
60 PF13429 TPR_15: Tetratricopep 99.8 2.6E-19 5.6E-24 193.1 14.6 265 407-734 12-277 (280)
61 KOG3785 Uncharacterized conser 99.8 3.6E-15 7.9E-20 149.5 40.8 449 92-661 31-492 (557)
62 KOG3785 Uncharacterized conser 99.8 1.9E-15 4.2E-20 151.5 38.3 452 127-738 32-494 (557)
63 PF13429 TPR_15: Tetratricopep 99.8 4.8E-19 1E-23 191.1 13.5 262 122-393 13-277 (280)
64 PRK12370 invasion protein regu 99.8 8.8E-17 1.9E-21 189.3 31.8 251 98-360 276-535 (553)
65 KOG1129 TPR repeat-containing 99.8 1E-17 2.2E-22 166.0 19.8 275 92-374 188-472 (478)
66 PRK12370 invasion protein regu 99.8 1.8E-16 3.9E-21 186.7 31.6 269 112-392 251-534 (553)
67 PRK10747 putative protoheme IX 99.8 2.4E-15 5.2E-20 169.6 37.7 296 86-394 87-391 (398)
68 KOG2376 Signal recognition par 99.8 3.3E-14 7.2E-19 152.9 43.5 446 61-558 24-502 (652)
69 TIGR00540 hemY_coli hemY prote 99.8 5.7E-15 1.2E-19 167.6 39.2 291 61-360 96-399 (409)
70 KOG1125 TPR repeat-containing 99.7 1.3E-16 2.8E-21 171.5 21.6 265 156-424 289-563 (579)
71 PRK10747 putative protoheme IX 99.7 8E-15 1.7E-19 165.3 35.1 297 120-432 87-390 (398)
72 KOG1125 TPR repeat-containing 99.7 6.7E-16 1.4E-20 166.1 22.9 257 407-724 289-561 (579)
73 PRK11189 lipoprotein NlpI; Pro 99.7 4.2E-15 9E-20 160.3 29.3 151 63-218 40-194 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.7 4.7E-15 1E-19 159.9 27.5 149 97-250 40-192 (296)
75 COG3063 PilF Tfp pilus assembl 99.7 7.9E-15 1.7E-19 140.2 25.4 209 152-367 35-243 (250)
76 COG3063 PilF Tfp pilus assembl 99.7 7.2E-15 1.6E-19 140.4 24.7 210 298-553 36-246 (250)
77 KOG1840 Kinesin light chain [C 99.7 7.6E-14 1.7E-18 155.4 35.5 254 254-542 193-478 (508)
78 KOG0550 Molecular chaperone (D 99.7 7.4E-15 1.6E-19 151.1 24.9 313 118-556 50-362 (486)
79 KOG0550 Molecular chaperone (D 99.7 3.1E-15 6.7E-20 153.8 21.9 275 60-363 60-353 (486)
80 KOG1840 Kinesin light chain [C 99.7 1.2E-13 2.6E-18 154.0 35.3 255 218-508 194-478 (508)
81 TIGR02521 type_IV_pilW type IV 99.7 1.5E-14 3.2E-19 152.2 27.2 177 67-247 49-227 (234)
82 TIGR02521 type_IV_pilW type IV 99.7 2.4E-14 5.2E-19 150.6 28.2 202 152-360 31-232 (234)
83 PF12569 NARP1: NMDA receptor- 99.7 2.2E-13 4.7E-18 154.1 36.9 449 83-574 4-517 (517)
84 COG2956 Predicted N-acetylgluc 99.7 7.5E-13 1.6E-17 132.3 35.2 300 86-431 38-346 (389)
85 COG2956 Predicted N-acetylgluc 99.7 3.4E-13 7.3E-18 134.7 31.6 295 158-541 41-345 (389)
86 cd05804 StaR_like StaR_like; a 99.6 2.1E-12 4.4E-17 145.4 36.6 205 79-288 2-214 (355)
87 PLN02789 farnesyltranstransfer 99.6 2.7E-13 5.8E-18 145.2 27.4 222 476-718 33-268 (320)
88 PLN02789 farnesyltranstransfer 99.6 3.5E-13 7.5E-18 144.4 28.1 226 64-343 35-267 (320)
89 PF12569 NARP1: NMDA receptor- 99.6 3.1E-12 6.7E-17 144.9 36.9 324 403-788 4-392 (517)
90 cd05804 StaR_like StaR_like; a 99.6 1.2E-12 2.7E-17 147.2 33.9 307 36-359 4-335 (355)
91 KOG4340 Uncharacterized conser 99.6 2.4E-12 5.1E-17 126.7 28.5 423 92-585 19-451 (459)
92 KOG4340 Uncharacterized conser 99.5 1.3E-11 2.8E-16 121.6 30.1 288 60-355 21-334 (459)
93 TIGR03302 OM_YfiO outer membra 99.5 1.9E-12 4.1E-17 136.0 24.8 113 78-190 28-153 (235)
94 TIGR03302 OM_YfiO outer membra 99.5 4E-12 8.7E-17 133.5 24.5 196 113-328 29-234 (235)
95 PRK15359 type III secretion sy 99.5 6.8E-13 1.5E-17 125.8 15.9 127 69-199 13-139 (144)
96 COG3071 HemY Uncharacterized e 99.5 1E-09 2.2E-14 114.0 38.1 297 87-393 88-390 (400)
97 KOG1130 Predicted G-alpha GTPa 99.4 2.4E-12 5.3E-17 132.0 15.2 297 230-563 24-370 (639)
98 PRK14720 transcript cleavage f 99.4 7E-11 1.5E-15 139.4 27.9 229 76-344 24-270 (906)
99 PRK10370 formate-dependent nit 99.4 2.1E-11 4.6E-16 122.1 20.3 123 63-186 53-178 (198)
100 COG3071 HemY Uncharacterized e 99.4 1.4E-09 3E-14 113.0 33.5 294 122-431 89-389 (400)
101 KOG1130 Predicted G-alpha GTPa 99.4 1.2E-11 2.6E-16 127.0 17.6 157 276-432 171-344 (639)
102 PRK04841 transcriptional regul 99.4 9.7E-10 2.1E-14 140.0 38.8 387 261-700 342-762 (903)
103 PRK15359 type III secretion sy 99.4 9.4E-12 2E-16 118.0 14.9 125 103-234 13-137 (144)
104 KOG3060 Uncharacterized conser 99.3 5.1E-10 1.1E-14 108.8 24.3 210 378-641 26-236 (289)
105 PRK04841 transcriptional regul 99.3 5.6E-09 1.2E-13 133.1 42.0 366 64-433 356-761 (903)
106 COG5010 TadD Flp pilus assembl 99.3 1.5E-10 3.2E-15 114.1 19.9 178 68-250 52-229 (257)
107 KOG3060 Uncharacterized conser 99.3 6.6E-10 1.4E-14 108.0 22.9 166 64-230 67-232 (289)
108 KOG1128 Uncharacterized conser 99.3 9E-11 2E-15 130.0 19.0 192 39-252 425-616 (777)
109 PRK10370 formate-dependent nit 99.3 1.3E-10 2.8E-15 116.5 18.3 124 610-740 53-179 (198)
110 TIGR02552 LcrH_SycD type III s 99.3 7E-11 1.5E-15 112.0 15.4 119 70-189 4-122 (135)
111 PRK14720 transcript cleavage f 99.3 1.5E-10 3.2E-15 136.7 21.0 225 475-750 26-268 (906)
112 KOG2053 Mitochondrial inherita 99.3 2.1E-06 4.6E-11 98.2 52.9 96 610-715 453-552 (932)
113 COG5010 TadD Flp pilus assembl 99.3 7.4E-10 1.6E-14 109.2 21.3 180 100-287 50-229 (257)
114 KOG3617 WD40 and TPR repeat-co 99.3 7.2E-08 1.6E-12 107.7 38.5 283 398-740 1075-1365(1416)
115 KOG1128 Uncharacterized conser 99.2 1.7E-09 3.8E-14 120.1 24.6 222 294-578 395-617 (777)
116 PRK15179 Vi polysaccharide bio 99.2 7.9E-10 1.7E-14 130.3 23.3 150 72-225 75-224 (694)
117 TIGR02552 LcrH_SycD type III s 99.2 5.6E-10 1.2E-14 105.8 15.3 118 104-225 4-121 (135)
118 KOG2053 Mitochondrial inherita 99.2 7.6E-06 1.6E-10 93.9 48.8 470 62-580 22-539 (932)
119 PRK15363 pathogenicity island 99.1 6.7E-10 1.5E-14 102.5 13.5 108 75-183 26-134 (157)
120 KOG0553 TPR repeat-containing 99.1 6.4E-10 1.4E-14 111.7 13.2 115 86-201 84-198 (304)
121 PRK10866 outer membrane biogen 99.1 2.2E-08 4.7E-13 103.7 24.9 86 81-166 30-120 (243)
122 KOG3617 WD40 and TPR repeat-co 99.1 1.6E-06 3.4E-11 97.4 40.2 188 478-698 965-1174(1416)
123 PF04733 Coatomer_E: Coatomer 99.1 1.1E-09 2.3E-14 116.3 14.1 147 223-380 102-251 (290)
124 PF04733 Coatomer_E: Coatomer 99.1 1.8E-09 4E-14 114.5 15.5 259 90-367 8-272 (290)
125 COG4783 Putative Zn-dependent 99.1 9.4E-09 2E-13 110.0 20.3 153 114-290 303-455 (484)
126 KOG2471 TPR repeat-containing 99.1 5.3E-08 1.2E-12 102.9 25.4 168 333-527 208-382 (696)
127 PRK15179 Vi polysaccharide bio 99.1 6.4E-09 1.4E-13 122.7 21.0 148 102-253 71-218 (694)
128 PF13525 YfiO: Outer membrane 99.1 1.7E-08 3.6E-13 102.3 20.9 189 82-316 4-197 (203)
129 COG4783 Putative Zn-dependent 99.0 7.8E-08 1.7E-12 103.1 25.0 150 152-327 306-455 (484)
130 KOG0553 TPR repeat-containing 99.0 3.5E-09 7.6E-14 106.4 13.5 109 60-169 92-200 (304)
131 PRK15363 pathogenicity island 99.0 8.2E-09 1.8E-13 95.4 14.7 106 110-219 27-133 (157)
132 PRK10866 outer membrane biogen 99.0 9.2E-08 2E-12 99.1 24.1 187 115-321 30-236 (243)
133 PF13525 YfiO: Outer membrane 99.0 4.2E-08 9.1E-13 99.4 21.1 191 479-725 4-198 (203)
134 PLN03088 SGT1, suppressor of 99.0 6.6E-09 1.4E-13 114.7 16.5 113 86-199 5-117 (356)
135 KOG1914 mRNA cleavage and poly 99.0 5.3E-05 1.1E-09 82.2 44.0 415 73-577 10-464 (656)
136 KOG2300 Uncharacterized conser 99.0 8.3E-05 1.8E-09 79.5 43.1 421 118-625 8-514 (629)
137 KOG3616 Selective LIM binding 98.9 2.3E-05 4.9E-10 87.1 40.1 326 60-430 455-818 (1636)
138 KOG3616 Selective LIM binding 98.9 0.0001 2.2E-09 82.1 44.2 227 126-390 670-908 (1636)
139 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.4E-08 5.2E-13 92.1 14.5 108 83-190 2-114 (119)
140 KOG1941 Acetylcholine receptor 98.9 3.8E-07 8.2E-12 93.2 22.7 306 231-573 14-356 (518)
141 COG4785 NlpI Lipoprotein NlpI, 98.9 1.2E-07 2.7E-12 89.8 17.9 105 36-151 63-167 (297)
142 KOG1914 mRNA cleavage and poly 98.9 0.00019 4.1E-09 78.0 43.7 189 496-700 309-503 (656)
143 PLN03088 SGT1, suppressor of 98.9 4E-08 8.8E-13 108.5 16.1 112 120-235 5-116 (356)
144 COG4235 Cytochrome c biogenesi 98.9 8.3E-08 1.8E-12 97.7 16.4 148 39-187 97-262 (287)
145 COG4785 NlpI Lipoprotein NlpI, 98.8 1.2E-07 2.5E-12 90.0 14.8 196 83-288 65-265 (297)
146 PRK02603 photosystem I assembl 98.8 1.6E-07 3.5E-12 92.7 15.8 120 79-222 31-153 (172)
147 KOG1941 Acetylcholine receptor 98.8 2.5E-06 5.4E-11 87.3 24.0 176 224-399 84-281 (518)
148 PRK15331 chaperone protein Sic 98.8 1.1E-07 2.4E-12 88.2 13.1 109 75-185 29-137 (165)
149 KOG1070 rRNA processing protei 98.8 3.6E-06 7.7E-11 100.2 28.5 234 133-375 1440-1680(1710)
150 cd00189 TPR Tetratricopeptide 98.7 1E-07 2.2E-12 83.7 11.8 98 85-183 2-99 (100)
151 COG4235 Cytochrome c biogenesi 98.7 2.8E-07 6.1E-12 93.9 16.0 121 133-254 138-258 (287)
152 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.6E-07 5.5E-12 85.2 14.6 108 261-368 3-113 (119)
153 PF13414 TPR_11: TPR repeat; P 98.7 3.8E-08 8.3E-13 80.3 8.0 67 82-148 2-69 (69)
154 PRK11906 transcriptional regul 98.7 7.6E-07 1.6E-11 96.4 19.3 135 87-225 259-408 (458)
155 COG1729 Uncharacterized protei 98.7 1.6E-07 3.5E-12 94.5 12.8 107 633-741 144-251 (262)
156 KOG3081 Vesicle coat complex C 98.7 7.1E-06 1.5E-10 81.2 23.6 195 482-698 74-270 (299)
157 CHL00033 ycf3 photosystem I as 98.7 4.3E-07 9.3E-12 89.4 15.7 101 65-166 15-120 (168)
158 PF12895 Apc3: Anaphase-promot 98.7 3.6E-08 7.8E-13 84.0 6.9 81 96-178 2-84 (84)
159 COG4105 ComL DNA uptake lipopr 98.7 8.5E-06 1.8E-10 81.4 24.4 82 82-163 33-119 (254)
160 PF09976 TPR_21: Tetratricopep 98.7 7E-07 1.5E-11 85.2 16.5 111 67-179 29-145 (145)
161 PRK10803 tol-pal system protei 98.7 2.3E-07 4.9E-12 96.7 14.1 111 629-741 141-253 (263)
162 PF13414 TPR_11: TPR repeat; P 98.7 6.8E-08 1.5E-12 78.8 8.0 67 116-183 2-69 (69)
163 PRK10803 tol-pal system protei 98.7 5.3E-07 1.1E-11 93.9 16.4 106 84-189 143-254 (263)
164 PF09976 TPR_21: Tetratricopep 98.7 8.7E-07 1.9E-11 84.6 16.1 119 94-216 22-145 (145)
165 PRK11906 transcriptional regul 98.7 1.7E-06 3.7E-11 93.8 19.9 148 64-216 273-434 (458)
166 KOG3081 Vesicle coat complex C 98.7 2.3E-05 5E-10 77.6 25.5 253 268-582 16-276 (299)
167 KOG2471 TPR repeat-containing 98.6 7.7E-05 1.7E-09 79.7 31.0 277 64-344 32-382 (696)
168 COG4105 ComL DNA uptake lipopr 98.6 9.7E-06 2.1E-10 81.0 22.9 200 478-739 32-238 (254)
169 PRK10153 DNA-binding transcrip 98.6 1.6E-06 3.6E-11 99.6 20.2 142 78-224 332-488 (517)
170 PF13432 TPR_16: Tetratricopep 98.6 9.9E-08 2.1E-12 76.7 7.4 63 88-150 2-64 (65)
171 KOG1070 rRNA processing protei 98.6 1E-05 2.2E-10 96.6 26.4 217 207-432 1442-1663(1710)
172 PF12895 Apc3: Anaphase-promot 98.6 5.5E-08 1.2E-12 82.9 5.7 80 63-143 3-84 (84)
173 PRK02603 photosystem I assembl 98.6 9.7E-07 2.1E-11 87.1 15.1 108 257-364 32-153 (172)
174 KOG0543 FKBP-type peptidyl-pro 98.6 5.8E-07 1.3E-11 94.8 14.0 136 2-148 215-357 (397)
175 KOG0543 FKBP-type peptidyl-pro 98.6 1.1E-06 2.4E-11 92.7 15.6 131 86-219 211-356 (397)
176 cd00189 TPR Tetratricopeptide 98.6 6.6E-07 1.4E-11 78.3 12.3 98 119-220 2-99 (100)
177 PF14938 SNAP: Soluble NSF att 98.6 1.6E-06 3.4E-11 93.1 17.1 209 371-628 41-269 (282)
178 KOG2300 Uncharacterized conser 98.6 0.002 4.4E-08 69.3 43.1 197 492-704 287-520 (629)
179 COG3898 Uncharacterized membra 98.6 0.00024 5.3E-09 74.0 31.4 278 67-359 102-391 (531)
180 PRK10153 DNA-binding transcrip 98.6 1.5E-06 3.3E-11 99.9 17.2 125 62-188 355-489 (517)
181 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00021 4.6E-09 74.8 32.7 120 63-183 37-161 (291)
182 KOG0985 Vesicle coat protein c 98.5 0.0048 1E-07 72.0 44.2 131 482-643 1196-1326(1666)
183 PF14938 SNAP: Soluble NSF att 98.5 2.2E-06 4.8E-11 92.0 17.0 107 632-738 116-229 (282)
184 PF13432 TPR_16: Tetratricopep 98.5 2.4E-07 5.1E-12 74.5 7.2 64 122-186 2-65 (65)
185 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00034 7.4E-09 73.2 33.9 227 97-363 37-268 (291)
186 CHL00033 ycf3 photosystem I as 98.5 1.7E-06 3.7E-11 85.1 14.5 106 259-364 34-153 (168)
187 PF13512 TPR_18: Tetratricopep 98.5 2.8E-06 6.1E-11 77.3 14.0 86 82-167 9-99 (142)
188 COG1729 Uncharacterized protei 98.5 3.4E-06 7.5E-11 85.1 15.3 110 226-335 144-253 (262)
189 KOG4648 Uncharacterized conser 98.5 7E-08 1.5E-12 97.5 3.0 242 87-372 101-342 (536)
190 PRK15331 chaperone protein Sic 98.5 1.9E-06 4.2E-11 80.1 12.1 107 112-223 32-138 (165)
191 COG3898 Uncharacterized membra 98.5 0.00072 1.6E-08 70.6 31.7 293 122-432 89-392 (531)
192 PF13512 TPR_18: Tetratricopep 98.5 4.7E-06 1E-10 75.9 13.9 111 629-741 9-135 (142)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 6.1E-06 1.3E-10 90.5 17.5 111 96-213 182-292 (395)
194 COG5107 RNA14 Pre-mRNA 3'-end 98.4 0.0046 1E-07 65.9 38.0 424 71-577 30-495 (660)
195 PF12688 TPR_5: Tetratrico pep 98.4 1.2E-05 2.5E-10 72.4 14.2 97 83-180 1-103 (120)
196 KOG1258 mRNA processing protei 98.4 0.0096 2.1E-07 66.7 40.4 184 331-561 297-488 (577)
197 KOG2796 Uncharacterized conser 98.3 7.5E-05 1.6E-09 73.5 19.9 164 494-678 163-332 (366)
198 KOG1258 mRNA processing protei 98.3 0.011 2.4E-07 66.2 41.7 187 403-644 297-489 (577)
199 PF14559 TPR_19: Tetratricopep 98.3 1.7E-06 3.7E-11 70.3 7.2 56 95-150 3-58 (68)
200 PF14559 TPR_19: Tetratricopep 98.3 1.8E-06 3.8E-11 70.2 6.7 64 129-193 3-66 (68)
201 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.7E-05 3.7E-10 87.1 16.2 121 123-250 175-295 (395)
202 PF10345 Cohesin_load: Cohesin 98.3 0.024 5.1E-07 68.2 53.1 472 205-733 37-605 (608)
203 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.3E-10 71.6 12.7 97 262-358 3-102 (120)
204 KOG4234 TPR repeat-containing 98.3 1.3E-05 2.7E-10 75.5 12.1 107 120-229 98-208 (271)
205 PF13371 TPR_9: Tetratricopept 98.3 5.3E-06 1.1E-10 68.5 8.7 60 91-150 3-62 (73)
206 COG4700 Uncharacterized protei 98.2 0.00029 6.3E-09 65.9 19.8 148 531-698 73-222 (251)
207 KOG4648 Uncharacterized conser 98.2 9.1E-07 2E-11 89.7 3.9 224 407-701 101-333 (536)
208 KOG4507 Uncharacterized conser 98.2 0.00044 9.5E-09 75.6 23.6 116 73-189 203-320 (886)
209 PF13371 TPR_9: Tetratricopept 98.2 8E-06 1.7E-10 67.4 8.5 70 124-194 2-71 (73)
210 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.017 3.6E-07 61.9 37.3 482 105-703 30-536 (660)
211 PF07079 DUF1347: Protein of u 98.2 0.019 4.2E-07 61.7 45.4 121 61-181 18-157 (549)
212 KOG2796 Uncharacterized conser 98.1 0.0011 2.3E-08 65.7 23.0 243 477-749 66-333 (366)
213 KOG4234 TPR repeat-containing 98.1 4.5E-05 9.8E-10 71.9 12.7 111 85-196 97-212 (271)
214 PF13424 TPR_12: Tetratricopep 98.1 1E-05 2.2E-10 67.8 7.6 68 667-734 3-75 (78)
215 PF10345 Cohesin_load: Cohesin 98.1 0.056 1.2E-06 65.0 45.3 409 277-738 38-567 (608)
216 PF07079 DUF1347: Protein of u 98.1 0.027 5.9E-07 60.7 43.0 145 85-252 8-157 (549)
217 COG4700 Uncharacterized protei 98.1 0.0004 8.6E-09 65.0 17.6 131 403-576 89-221 (251)
218 KOG0985 Vesicle coat protein c 98.1 0.058 1.3E-06 63.5 50.0 270 90-415 1055-1325(1666)
219 KOG2396 HAT (Half-A-TPR) repea 98.0 0.044 9.5E-07 59.9 40.1 435 67-577 89-559 (568)
220 KOG4555 TPR repeat-containing 98.0 0.00043 9.3E-09 60.6 15.1 99 86-184 46-147 (175)
221 KOG4555 TPR repeat-containing 98.0 0.00022 4.8E-09 62.4 13.2 104 635-745 48-153 (175)
222 KOG1586 Protein required for f 98.0 0.0011 2.4E-08 64.6 19.0 135 346-516 88-231 (288)
223 PF13424 TPR_12: Tetratricopep 97.9 1.8E-05 4E-10 66.2 6.0 74 626-699 1-76 (78)
224 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.8E-05 1E-09 82.7 9.7 68 79-146 71-141 (453)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 7.1E-05 1.5E-09 81.4 9.8 70 112-181 70-141 (453)
226 KOG2610 Uncharacterized conser 97.8 0.0025 5.5E-08 65.3 19.3 171 520-704 109-282 (491)
227 KOG1586 Protein required for f 97.8 0.0095 2.1E-07 58.3 21.9 186 344-580 27-227 (288)
228 PF06552 TOM20_plant: Plant sp 97.8 0.00024 5.2E-09 66.9 10.9 109 63-195 5-123 (186)
229 PF06552 TOM20_plant: Plant sp 97.7 0.00028 6.1E-09 66.4 10.9 106 99-232 7-123 (186)
230 PF05843 Suf: Suppressor of fo 97.7 0.00085 1.8E-08 71.7 15.9 132 86-221 4-139 (280)
231 KOG1550 Extracellular protein 97.7 0.018 3.9E-07 67.9 27.6 177 64-249 227-423 (552)
232 PF10300 DUF3808: Protein of u 97.7 0.0007 1.5E-08 77.7 15.3 163 8-180 201-375 (468)
233 KOG2610 Uncharacterized conser 97.7 0.0047 1E-07 63.4 19.0 127 86-215 106-235 (491)
234 KOG4507 Uncharacterized conser 97.7 0.01 2.2E-07 65.5 22.7 118 625-748 600-719 (886)
235 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.6E-08 70.6 16.0 127 610-741 15-143 (280)
236 KOG1585 Protein required for f 97.6 0.012 2.5E-07 58.1 20.2 56 376-431 83-138 (308)
237 KOG2396 HAT (Half-A-TPR) repea 97.6 0.17 3.7E-06 55.6 45.4 96 100-196 88-184 (568)
238 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.3E-09 52.4 5.5 43 83-125 1-43 (44)
239 KOG1585 Protein required for f 97.6 0.013 2.9E-07 57.7 19.6 200 153-387 32-250 (308)
240 KOG4642 Chaperone-dependent E3 97.6 0.00058 1.3E-08 66.7 10.4 123 302-424 15-138 (284)
241 KOG4642 Chaperone-dependent E3 97.6 0.0012 2.5E-08 64.7 12.3 86 61-146 22-107 (284)
242 KOG2062 26S proteasome regulat 97.5 0.29 6.3E-06 56.2 38.8 303 308-679 368-689 (929)
243 PF10300 DUF3808: Protein of u 97.5 0.11 2.3E-06 60.0 30.4 120 238-360 248-376 (468)
244 PF04184 ST7: ST7 protein; In 97.5 0.0051 1.1E-07 67.2 17.8 188 522-740 176-381 (539)
245 PF04184 ST7: ST7 protein; In 97.5 0.0029 6.3E-08 69.1 15.8 163 63-227 182-384 (539)
246 PF13281 DUF4071: Domain of un 97.5 0.014 2.9E-07 63.4 20.9 131 514-649 141-278 (374)
247 KOG1550 Extracellular protein 97.5 0.047 1E-06 64.5 26.9 165 479-660 359-539 (552)
248 PF13428 TPR_14: Tetratricopep 97.4 0.00032 6.8E-09 50.8 5.3 41 154-194 3-43 (44)
249 PF08631 SPO22: Meiosis protei 97.4 0.17 3.6E-06 54.2 27.8 68 187-254 85-152 (278)
250 PF08631 SPO22: Meiosis protei 97.4 0.11 2.3E-06 55.7 26.3 132 413-579 3-152 (278)
251 PF02259 FAT: FAT domain; Int 97.4 0.066 1.4E-06 60.0 26.1 151 219-375 142-302 (352)
252 COG3118 Thioredoxin domain-con 97.4 0.015 3.1E-07 59.7 17.9 60 84-143 135-194 (304)
253 PF13281 DUF4071: Domain of un 97.2 0.041 9E-07 59.7 21.0 182 401-635 139-344 (374)
254 COG2909 MalT ATP-dependent tra 97.2 0.38 8.3E-06 56.9 29.7 240 479-731 414-685 (894)
255 COG2976 Uncharacterized protei 97.2 0.0054 1.2E-07 58.6 12.2 120 614-738 70-192 (207)
256 KOG2041 WD40 repeat protein [G 97.2 0.63 1.4E-05 53.0 32.4 244 144-429 686-936 (1189)
257 PF02259 FAT: FAT domain; Int 97.2 0.33 7.1E-06 54.3 28.9 128 626-754 142-307 (352)
258 KOG0376 Serine-threonine phosp 97.1 0.0006 1.3E-08 74.0 5.7 89 62-150 17-105 (476)
259 KOG0376 Serine-threonine phosp 97.1 0.00077 1.7E-08 73.2 6.5 110 87-197 8-117 (476)
260 PRK15180 Vi polysaccharide bio 97.1 0.15 3.3E-06 55.2 23.1 125 61-186 301-425 (831)
261 KOG0545 Aryl-hydrocarbon recep 97.1 0.0043 9.2E-08 60.9 10.4 100 84-184 179-296 (329)
262 COG3118 Thioredoxin domain-con 97.1 0.058 1.3E-06 55.5 18.9 156 116-279 133-291 (304)
263 PF13431 TPR_17: Tetratricopep 97.1 0.00048 1E-08 46.3 2.7 32 72-103 2-33 (34)
264 KOG2062 26S proteasome regulat 97.1 0.95 2.1E-05 52.2 35.5 251 479-752 396-655 (929)
265 PF07719 TPR_2: Tetratricopept 97.1 0.0014 3.1E-08 44.2 5.1 33 706-738 2-34 (34)
266 KOG0545 Aryl-hydrocarbon recep 97.0 0.0071 1.5E-07 59.4 11.0 122 403-549 178-299 (329)
267 PF13431 TPR_17: Tetratricopep 97.0 0.00082 1.8E-08 45.2 3.2 32 106-137 2-33 (34)
268 KOG0530 Protein farnesyltransf 96.9 0.09 2E-06 52.7 17.8 183 67-250 61-251 (318)
269 KOG0890 Protein kinase of the 96.9 2.8 6.1E-05 55.3 40.1 391 228-632 1388-1840(2382)
270 COG2909 MalT ATP-dependent tra 96.9 1.6 3.5E-05 51.9 36.4 276 257-578 344-648 (894)
271 PF00515 TPR_1: Tetratricopept 96.9 0.002 4.3E-08 43.5 4.5 32 706-737 2-33 (34)
272 PRK13184 pknD serine/threonine 96.9 1.9 4E-05 53.4 32.5 124 62-186 488-625 (932)
273 COG2976 Uncharacterized protei 96.9 0.06 1.3E-06 51.7 15.7 102 261-363 90-191 (207)
274 PF00515 TPR_1: Tetratricopept 96.8 0.0019 4E-08 43.7 4.1 32 84-115 2-33 (34)
275 PF07719 TPR_2: Tetratricopept 96.8 0.0027 5.9E-08 42.8 4.8 31 85-115 3-33 (34)
276 KOG0128 RNA-binding protein SA 96.8 1.7 3.8E-05 51.0 38.3 236 481-726 313-555 (881)
277 PF08424 NRDE-2: NRDE-2, neces 96.8 0.092 2E-06 57.3 18.8 84 133-217 47-130 (321)
278 PRK13184 pknD serine/threonine 96.7 1.5 3.3E-05 54.2 30.4 112 228-343 480-598 (932)
279 KOG0551 Hsp90 co-chaperone CNS 96.7 0.11 2.3E-06 54.1 17.2 82 668-749 80-163 (390)
280 KOG0128 RNA-binding protein SA 96.7 2.2 4.7E-05 50.3 38.1 233 298-573 313-559 (881)
281 PRK15180 Vi polysaccharide bio 96.6 1.6 3.5E-05 47.6 29.0 129 92-224 298-426 (831)
282 KOG2041 WD40 repeat protein [G 96.5 2.3 5E-05 48.7 30.9 88 477-574 849-936 (1189)
283 PF04910 Tcf25: Transcriptiona 96.5 0.12 2.5E-06 57.2 17.1 150 74-223 31-227 (360)
284 KOG1464 COP9 signalosome, subu 96.4 0.24 5.2E-06 49.7 16.9 203 311-544 41-261 (440)
285 KOG0530 Protein farnesyltransf 96.4 0.72 1.6E-05 46.5 20.1 73 309-381 55-129 (318)
286 PF03704 BTAD: Bacterial trans 96.4 0.16 3.6E-06 48.3 15.8 127 262-404 8-137 (146)
287 KOG0551 Hsp90 co-chaperone CNS 96.4 0.033 7.2E-07 57.6 11.1 92 89-181 87-182 (390)
288 COG0790 FOG: TPR repeat, SEL1 96.3 0.47 1E-05 51.4 21.0 172 492-683 53-236 (292)
289 KOG0890 Protein kinase of the 96.2 7.4 0.00016 51.7 44.5 327 1-361 1389-1732(2382)
290 COG5159 RPN6 26S proteasome re 96.2 1.1 2.4E-05 45.6 20.1 177 404-628 126-317 (421)
291 PF03704 BTAD: Bacterial trans 96.2 0.28 6.1E-06 46.6 16.1 62 298-359 63-124 (146)
292 PF13174 TPR_6: Tetratricopept 96.0 0.0095 2.1E-07 39.7 3.8 30 671-700 2-31 (33)
293 KOG1308 Hsp70-interacting prot 96.0 0.0085 1.9E-07 62.2 5.0 95 89-184 120-214 (377)
294 PF04910 Tcf25: Transcriptiona 95.9 0.35 7.6E-06 53.4 17.4 98 337-434 109-224 (360)
295 PF08424 NRDE-2: NRDE-2, neces 95.9 0.64 1.4E-05 50.8 19.3 121 313-433 47-184 (321)
296 COG0790 FOG: TPR repeat, SEL1 95.9 1.3 2.8E-05 47.9 21.7 167 62-237 54-236 (292)
297 KOG1308 Hsp70-interacting prot 95.8 0.0047 1E-07 64.0 2.3 90 61-150 126-215 (377)
298 PF09613 HrpB1_HrpK: Bacterial 95.8 0.12 2.6E-06 48.6 11.0 85 84-169 11-95 (160)
299 PF13176 TPR_7: Tetratricopept 95.8 0.016 3.4E-07 39.7 4.0 28 671-698 1-28 (36)
300 PF13181 TPR_8: Tetratricopept 95.7 0.017 3.6E-07 38.9 4.0 30 154-183 3-32 (34)
301 PF13174 TPR_6: Tetratricopept 95.7 0.023 5.1E-07 37.8 4.7 33 706-738 1-33 (33)
302 PF13181 TPR_8: Tetratricopept 95.6 0.02 4.3E-07 38.5 4.1 30 707-736 3-32 (34)
303 KOG1464 COP9 signalosome, subu 95.5 1.2 2.7E-05 44.8 17.4 200 344-580 40-263 (440)
304 KOG2422 Uncharacterized conser 95.5 1.1 2.3E-05 50.4 18.5 158 64-222 253-452 (665)
305 KOG3364 Membrane protein invol 95.4 0.15 3.3E-06 45.7 9.7 81 668-748 31-114 (149)
306 KOG3783 Uncharacterized conser 95.4 2.7 5.9E-05 47.2 21.4 244 497-747 250-532 (546)
307 PF04781 DUF627: Protein of un 95.3 0.11 2.4E-06 45.2 8.4 106 1-112 2-107 (111)
308 KOG1144 Translation initiation 95.3 0.12 2.6E-06 59.2 10.8 7 806-812 218-224 (1064)
309 PF04781 DUF627: Protein of un 95.2 0.27 5.8E-06 42.9 10.4 102 124-251 3-106 (111)
310 COG4649 Uncharacterized protei 95.1 0.92 2E-05 42.7 13.9 95 228-324 99-194 (221)
311 PF09613 HrpB1_HrpK: Bacterial 95.0 0.32 7E-06 45.7 11.2 101 38-150 10-110 (160)
312 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.1 2.2E-06 39.1 6.3 43 706-748 2-44 (53)
313 COG5159 RPN6 26S proteasome re 94.9 5.3 0.00011 40.9 23.1 274 87-389 7-310 (421)
314 KOG3783 Uncharacterized conser 94.9 8.8 0.00019 43.4 26.3 254 206-513 250-524 (546)
315 PF14561 TPR_20: Tetratricopep 94.8 0.26 5.7E-06 41.9 9.3 64 103-166 8-72 (90)
316 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.13 2.9E-06 38.4 6.4 41 154-194 3-43 (53)
317 PF09986 DUF2225: Uncharacteri 94.7 0.3 6.4E-06 49.5 11.1 69 668-736 117-196 (214)
318 KOG1463 26S proteasome regulat 94.7 6.8 0.00015 41.4 22.9 169 191-362 133-318 (411)
319 KOG3364 Membrane protein invol 94.5 0.5 1.1E-05 42.5 10.4 79 116-194 31-113 (149)
320 PRK12798 chemotaxis protein; R 94.4 3.6 7.7E-05 45.1 18.7 199 537-751 100-302 (421)
321 KOG1463 26S proteasome regulat 94.3 8.2 0.00018 40.8 23.3 276 86-390 7-313 (411)
322 PF14561 TPR_20: Tetratricopep 94.3 0.41 8.9E-06 40.8 9.4 67 68-134 7-75 (90)
323 PF08492 SRP72: SRP72 RNA-bind 94.2 0.001 2.3E-08 50.0 -5.7 29 860-888 26-59 (59)
324 KOG3807 Predicted membrane pro 94.2 8.1 0.00018 40.4 19.6 118 156-290 188-305 (556)
325 PF13176 TPR_7: Tetratricopept 94.0 0.1 2.2E-06 35.6 4.1 23 86-108 2-24 (36)
326 PRK10941 hypothetical protein; 94.0 0.41 8.9E-06 50.1 10.6 62 89-150 187-248 (269)
327 TIGR02561 HrpB1_HrpK type III 94.0 1.5 3.3E-05 40.5 12.6 84 85-169 12-95 (153)
328 PF12968 DUF3856: Domain of Un 93.9 1.9 4.1E-05 37.8 12.3 98 637-734 16-129 (144)
329 KOG1538 Uncharacterized conser 93.8 14 0.00031 42.3 22.0 27 479-505 803-829 (1081)
330 COG4649 Uncharacterized protei 93.7 6.2 0.00013 37.4 16.1 126 89-217 64-195 (221)
331 PRK10941 hypothetical protein; 93.6 0.63 1.4E-05 48.8 11.1 76 300-375 184-259 (269)
332 KOG3824 Huntingtin interacting 93.6 0.091 2E-06 53.6 4.6 71 88-159 121-191 (472)
333 KOG2114 Vacuolar assembly/sort 93.5 21 0.00046 42.5 33.4 176 229-428 340-515 (933)
334 KOG3824 Huntingtin interacting 93.2 0.24 5.1E-06 50.7 6.9 65 162-229 126-190 (472)
335 PF10602 RPN7: 26S proteasome 93.2 0.52 1.1E-05 46.2 9.2 65 224-288 37-101 (177)
336 PF09986 DUF2225: Uncharacteri 93.2 2 4.2E-05 43.6 13.5 103 378-510 91-195 (214)
337 TIGR02561 HrpB1_HrpK type III 93.1 1.1 2.3E-05 41.5 10.1 70 65-134 26-95 (153)
338 PF04190 DUF410: Protein of un 93.1 13 0.00029 39.0 23.2 140 476-642 86-240 (260)
339 PF10602 RPN7: 26S proteasome 93.1 0.92 2E-05 44.5 10.7 103 631-735 37-143 (177)
340 smart00028 TPR Tetratricopepti 92.5 0.21 4.6E-06 32.3 4.0 30 85-114 3-32 (34)
341 KOG1538 Uncharacterized conser 92.2 10 0.00022 43.4 18.1 83 261-357 748-830 (1081)
342 smart00028 TPR Tetratricopepti 92.1 0.25 5.4E-06 32.0 3.9 28 671-698 3-30 (34)
343 KOG2422 Uncharacterized conser 92.1 7.9 0.00017 43.9 17.0 156 493-661 251-450 (665)
344 KOG3807 Predicted membrane pro 91.9 18 0.00038 38.0 18.1 103 633-742 278-399 (556)
345 PF12968 DUF3856: Domain of Un 91.9 8.4 0.00018 34.0 15.0 56 124-179 16-82 (144)
346 PF12862 Apc5: Anaphase-promot 91.6 1.3 2.8E-05 38.3 8.6 65 641-705 9-77 (94)
347 COG5191 Uncharacterized conser 91.1 0.61 1.3E-05 48.0 6.8 89 106-195 96-185 (435)
348 PRK11619 lytic murein transgly 91.0 43 0.00093 40.4 40.9 124 302-431 246-374 (644)
349 COG5191 Uncharacterized conser 91.0 0.36 7.8E-06 49.6 5.1 84 72-156 96-180 (435)
350 COG3914 Spy Predicted O-linked 90.9 8.8 0.00019 43.8 16.0 121 103-227 51-180 (620)
351 PRK11619 lytic murein transgly 90.4 49 0.0011 40.0 38.6 73 71-147 84-159 (644)
352 KOG1310 WD40 repeat protein [G 90.3 0.7 1.5E-05 51.1 6.9 101 84-185 375-478 (758)
353 COG3914 Spy Predicted O-linked 90.3 6.8 0.00015 44.6 14.5 127 68-195 50-185 (620)
354 COG4976 Predicted methyltransf 90.1 0.41 8.9E-06 47.2 4.5 58 127-185 5-62 (287)
355 COG5116 RPN2 26S proteasome re 89.8 41 0.00089 38.2 23.0 167 3-183 67-239 (926)
356 KOG0163 Myosin class VI heavy 89.1 53 0.0012 38.6 20.6 24 634-661 750-773 (1259)
357 COG4976 Predicted methyltransf 89.0 0.76 1.6E-05 45.4 5.4 59 92-150 4-62 (287)
358 KOG1832 HIV-1 Vpr-binding prot 89.0 0.18 3.9E-06 58.6 1.3 20 153-172 407-426 (1516)
359 PF13374 TPR_10: Tetratricopep 89.0 0.84 1.8E-05 32.0 4.5 30 670-699 3-32 (42)
360 PF10579 Rapsyn_N: Rapsyn N-te 88.7 2.6 5.6E-05 34.2 7.2 58 673-730 10-68 (80)
361 KOG1144 Translation initiation 88.6 10 0.00022 44.4 14.6 41 811-852 216-256 (1064)
362 PF10579 Rapsyn_N: Rapsyn N-te 88.6 4.4 9.5E-05 33.0 8.4 62 155-216 9-70 (80)
363 KOG4422 Uncharacterized conser 88.4 44 0.00094 36.8 32.0 262 5-287 125-425 (625)
364 PF15015 NYD-SP12_N: Spermatog 88.0 10 0.00022 41.2 13.2 88 121-211 180-284 (569)
365 KOG0529 Protein geranylgeranyl 87.9 40 0.00088 37.0 17.7 163 66-228 46-234 (421)
366 KOG2581 26S proteasome regulat 87.6 48 0.001 36.2 18.3 108 223-330 169-280 (493)
367 PF11817 Foie-gras_1: Foie gra 87.3 31 0.00066 36.1 16.7 88 645-732 153-245 (247)
368 PF12862 Apc5: Anaphase-promot 86.8 7.9 0.00017 33.3 10.0 61 373-433 7-71 (94)
369 KOG1839 Uncharacterized protei 86.8 5.5 0.00012 49.8 12.0 143 218-360 968-1128(1236)
370 KOG1029 Endocytic adaptor prot 86.5 9.3 0.0002 44.5 12.6 14 826-839 357-370 (1118)
371 PF13374 TPR_10: Tetratricopep 86.3 1.5 3.3E-05 30.7 4.5 30 705-734 2-31 (42)
372 PF04053 Coatomer_WDAD: Coatom 86.2 17 0.00037 41.5 14.9 20 517-536 298-317 (443)
373 KOG1839 Uncharacterized protei 86.1 7.8 0.00017 48.5 12.8 171 261-432 933-1128(1236)
374 PF04053 Coatomer_WDAD: Coatom 86.0 22 0.00048 40.6 15.7 159 89-285 267-427 (443)
375 PF15015 NYD-SP12_N: Spermatog 85.9 8.7 0.00019 41.7 11.4 105 410-539 183-287 (569)
376 KOG1310 WD40 repeat protein [G 85.7 2.7 5.9E-05 46.7 7.7 89 62-150 387-478 (758)
377 COG2912 Uncharacterized conser 85.6 4.3 9.3E-05 41.9 8.8 60 91-150 189-248 (269)
378 PF04190 DUF410: Protein of un 84.9 55 0.0012 34.4 20.3 80 158-237 147-242 (260)
379 PF11207 DUF2989: Protein of u 84.7 7.9 0.00017 38.2 9.7 60 363-423 139-198 (203)
380 PF07720 TPR_3: Tetratricopept 84.1 3.1 6.7E-05 28.3 4.8 21 85-105 3-23 (36)
381 PF07721 TPR_4: Tetratricopept 84.1 1.4 3.1E-05 27.3 3.0 22 671-692 3-24 (26)
382 KOG1029 Endocytic adaptor prot 84.0 8.2 0.00018 44.9 10.7 12 830-841 351-362 (1118)
383 PF13041 PPR_2: PPR repeat fam 83.7 4.5 9.7E-05 29.9 6.1 45 669-714 3-47 (50)
384 KOG2561 Adaptor protein NUB1, 83.5 26 0.00057 38.4 13.6 26 709-734 271-296 (568)
385 PF12854 PPR_1: PPR repeat 83.5 1.6 3.6E-05 29.1 3.3 28 629-656 6-33 (34)
386 KOG2581 26S proteasome regulat 83.4 75 0.0016 34.8 22.2 135 610-744 140-286 (493)
387 PF13041 PPR_2: PPR repeat fam 83.3 3.7 8.1E-05 30.3 5.6 45 548-592 3-47 (50)
388 PF10516 SHNi-TPR: SHNi-TPR; 83.2 2.5 5.5E-05 29.1 4.1 29 670-698 2-30 (38)
389 KOG2114 Vacuolar assembly/sort 82.9 1.2E+02 0.0026 36.7 26.8 93 267-365 497-595 (933)
390 PF07720 TPR_3: Tetratricopept 82.4 4.3 9.3E-05 27.6 4.9 30 119-148 3-34 (36)
391 PLN03237 DNA topoisomerase 2; 82.3 4.2 9E-05 52.2 8.5 31 962-992 1259-1293(1465)
392 COG3629 DnrI DNA-binding trans 82.2 23 0.00049 37.3 12.5 64 330-393 152-216 (280)
393 COG1747 Uncharacterized N-term 81.6 1E+02 0.0022 35.0 26.2 228 479-741 65-295 (711)
394 PRK12798 chemotaxis protein; R 81.3 95 0.0021 34.5 23.7 208 107-326 74-286 (421)
395 PF07721 TPR_4: Tetratricopept 81.2 2.3 4.9E-05 26.4 3.0 23 85-107 3-25 (26)
396 COG1747 Uncharacterized N-term 81.1 1E+02 0.0023 34.8 26.9 94 117-217 66-159 (711)
397 COG3629 DnrI DNA-binding trans 80.8 11 0.00023 39.7 9.6 66 295-360 151-216 (280)
398 PF11207 DUF2989: Protein of u 80.5 34 0.00074 33.8 12.3 54 117-171 141-197 (203)
399 PF00244 14-3-3: 14-3-3 protei 79.9 39 0.00085 34.9 13.5 43 120-162 4-46 (236)
400 COG2912 Uncharacterized conser 79.5 16 0.00035 37.9 10.2 76 300-375 184-259 (269)
401 PF10255 Paf67: RNA polymerase 78.8 3.9 8.4E-05 45.3 6.0 63 118-180 123-192 (404)
402 PF12854 PPR_1: PPR repeat 77.6 4.5 9.7E-05 27.0 3.8 28 667-694 5-32 (34)
403 PF10255 Paf67: RNA polymerase 77.2 25 0.00054 39.2 11.6 64 262-325 124-192 (404)
404 PF10037 MRP-S27: Mitochondria 76.5 1.4E+02 0.0031 33.8 23.2 90 522-625 74-167 (429)
405 KOG1150 Predicted molecular ch 76.1 80 0.0017 30.7 12.8 28 855-884 195-222 (250)
406 KOG0529 Protein geranylgeranyl 75.7 1.3E+02 0.0029 33.2 16.6 132 610-748 89-238 (421)
407 KOG1920 IkappaB kinase complex 75.6 2.3E+02 0.0051 35.9 24.1 25 634-658 1003-1027(1265)
408 COG4941 Predicted RNA polymera 75.0 1.2E+02 0.0027 32.4 14.9 190 531-748 213-408 (415)
409 PF00244 14-3-3: 14-3-3 protei 74.5 1.1E+02 0.0024 31.7 14.9 61 155-217 4-65 (236)
410 KOG2063 Vacuolar assembly/sort 73.5 2.2E+02 0.0047 35.5 18.8 114 262-375 506-636 (877)
411 KOG0687 26S proteasome regulat 72.9 72 0.0016 33.9 12.6 100 82-181 103-210 (393)
412 PTZ00266 NIMA-related protein 72.8 31 0.00068 43.4 12.1 10 618-627 274-283 (1021)
413 KOG3677 RNA polymerase I-assoc 72.6 79 0.0017 34.7 13.2 63 262-325 237-300 (525)
414 PF12753 Nro1: Nuclear pore co 72.4 1.1E+02 0.0023 33.8 14.3 86 5-96 70-161 (404)
415 PF06936 Selenoprotein_S: Sele 71.6 32 0.0007 33.8 9.5 10 876-885 116-125 (190)
416 PF04840 Vps16_C: Vps16, C-ter 70.7 1.7E+02 0.0036 32.0 28.1 80 479-572 207-286 (319)
417 KOG0686 COP9 signalosome, subu 70.3 1.4E+02 0.0029 33.0 14.4 100 332-431 151-257 (466)
418 PF10516 SHNi-TPR: SHNi-TPR; 69.9 7.9 0.00017 26.7 3.5 29 515-543 2-30 (38)
419 PF11817 Foie-gras_1: Foie gra 69.6 1.5E+02 0.0032 31.0 16.3 91 379-506 153-244 (247)
420 KOG2393 Transcription initiati 69.6 6.4 0.00014 44.1 4.7 11 976-986 336-346 (555)
421 KOG0066 eIF2-interacting prote 67.9 3.9 8.4E-05 44.4 2.6 21 966-986 90-110 (807)
422 PF07946 DUF1682: Protein of u 67.8 42 0.0009 36.6 10.6 8 778-785 241-248 (321)
423 PF10446 DUF2457: Protein of u 67.7 3.4 7.5E-05 45.1 2.2 12 975-986 106-117 (458)
424 smart00386 HAT HAT (Half-A-TPR 67.7 13 0.00028 23.9 4.3 27 98-124 2-28 (33)
425 COG3947 Response regulator con 67.3 22 0.00047 37.0 7.5 61 334-394 282-343 (361)
426 KOG4014 Uncharacterized conser 67.1 1.3E+02 0.0027 29.3 15.9 154 257-432 31-197 (248)
427 smart00299 CLH Clathrin heavy 67.0 1.1E+02 0.0023 28.4 13.9 36 308-343 18-53 (140)
428 smart00386 HAT HAT (Half-A-TPR 65.3 15 0.00032 23.6 4.3 27 167-193 2-28 (33)
429 PF04097 Nic96: Nup93/Nic96; 65.2 1.2E+02 0.0026 36.6 14.8 240 90-367 265-540 (613)
430 TIGR03504 FimV_Cterm FimV C-te 64.2 7.5 0.00016 27.8 2.6 25 673-697 3-27 (44)
431 PF12739 TRAPPC-Trs85: ER-Golg 64.1 2.6E+02 0.0057 31.8 16.6 27 121-147 212-238 (414)
432 COG3947 Response regulator con 63.8 27 0.00059 36.3 7.5 61 119-180 281-341 (361)
433 KOG0686 COP9 signalosome, subu 63.3 1.2E+02 0.0025 33.5 12.3 65 224-288 151-215 (466)
434 PF12921 ATP13: Mitochondrial 62.7 70 0.0015 29.3 9.4 82 632-713 4-96 (126)
435 COG4455 ImpE Protein of avirul 62.6 54 0.0012 32.7 8.9 59 92-150 10-68 (273)
436 KOG1832 HIV-1 Vpr-binding prot 62.6 9.6 0.00021 45.2 4.6 24 114-137 403-426 (1516)
437 PF14863 Alkyl_sulf_dimr: Alky 62.2 22 0.00049 33.1 6.2 52 81-132 68-119 (141)
438 PF12739 TRAPPC-Trs85: ER-Golg 61.7 2.9E+02 0.0063 31.5 16.9 42 151-193 207-248 (414)
439 PF01535 PPR: PPR repeat; Int 61.6 9.5 0.00021 24.3 2.7 27 632-658 2-28 (31)
440 COG4455 ImpE Protein of avirul 61.4 46 0.00099 33.2 8.2 60 305-364 9-68 (273)
441 TIGR03362 VI_chp_7 type VI sec 60.2 2.5E+02 0.0054 30.3 16.4 58 302-359 218-278 (301)
442 KOG3654 Uncharacterized CH dom 60.2 96 0.0021 34.6 11.1 18 834-851 415-432 (708)
443 PF10373 EST1_DNA_bind: Est1 D 60.1 32 0.00069 36.6 8.1 62 136-198 1-62 (278)
444 COG5536 BET4 Protein prenyltra 59.9 1.1E+02 0.0024 31.9 10.8 168 62-230 45-234 (328)
445 PF09797 NatB_MDM20: N-acetylt 59.9 2.9E+02 0.0062 30.9 22.6 32 475-506 212-243 (365)
446 KOG0276 Vesicle coat complex C 59.6 97 0.0021 35.8 11.3 104 614-731 625-747 (794)
447 PF10373 EST1_DNA_bind: Est1 D 59.6 23 0.0005 37.7 6.9 62 499-560 1-62 (278)
448 KOG2063 Vacuolar assembly/sort 59.5 4.4E+02 0.0095 32.9 22.0 20 2-21 353-372 (877)
449 KOG2141 Protein involved in hi 59.5 5.7 0.00012 46.1 2.1 13 1017-1029 265-277 (822)
450 TIGR03504 FimV_Cterm FimV C-te 58.9 20 0.00043 25.7 4.0 25 87-111 3-27 (44)
451 KOG3054 Uncharacterized conser 58.9 1.1E+02 0.0023 30.9 10.1 13 858-870 154-166 (299)
452 PF09205 DUF1955: Domain of un 58.8 1.5E+02 0.0032 27.2 12.8 113 610-734 16-149 (161)
453 cd00280 TRFH Telomeric Repeat 58.2 81 0.0018 30.6 9.0 20 2-21 20-39 (200)
454 KOG4014 Uncharacterized conser 57.1 1.9E+02 0.0042 28.1 14.8 171 545-748 31-209 (248)
455 KOG4422 Uncharacterized conser 56.6 3.2E+02 0.007 30.4 37.8 98 325-431 201-301 (625)
456 PF09670 Cas_Cas02710: CRISPR- 56.1 1.9E+02 0.0041 32.5 13.4 24 89-112 137-160 (379)
457 KOG4814 Uncharacterized conser 55.8 4.1E+02 0.0088 31.4 38.1 87 60-146 365-457 (872)
458 smart00299 CLH Clathrin heavy 54.8 1.8E+02 0.0039 27.0 15.1 36 163-198 18-53 (140)
459 KOG2038 CAATT-binding transcri 54.4 12 0.00027 43.8 3.6 14 935-948 844-857 (988)
460 KOG4279 Serine/threonine prote 54.4 1.7E+02 0.0037 34.8 12.4 79 561-644 256-334 (1226)
461 PF09670 Cas_Cas02710: CRISPR- 54.3 2.1E+02 0.0045 32.1 13.3 62 482-543 133-198 (379)
462 PF13812 PPR_3: Pentatricopept 54.3 19 0.00041 23.5 3.3 28 632-659 3-30 (34)
463 TIGR00756 PPR pentatricopeptid 53.8 20 0.00042 23.4 3.4 27 633-659 3-29 (35)
464 KOG0546 HSP90 co-chaperone CPR 53.2 20 0.00043 38.4 4.6 76 299-374 277-352 (372)
465 KOG4364 Chromatin assembly fac 53.0 1.6E+02 0.0034 34.5 11.7 11 991-1001 502-512 (811)
466 PLN03086 PRLI-interacting fact 52.9 94 0.002 36.4 10.4 14 827-840 22-35 (567)
467 PF01535 PPR: PPR repeat; Int 51.5 20 0.00043 22.7 3.0 27 671-697 2-28 (31)
468 KOG0546 HSP90 co-chaperone CPR 51.2 21 0.00046 38.2 4.5 128 408-559 227-354 (372)
469 cd02680 MIT_calpain7_2 MIT: do 50.9 31 0.00067 28.1 4.4 21 681-701 18-38 (75)
470 COG5593 Nucleic-acid-binding p 50.1 16 0.00035 40.7 3.5 22 94-115 95-116 (821)
471 KOG4279 Serine/threonine prote 49.9 1.1E+02 0.0025 36.2 10.1 129 492-623 299-440 (1226)
472 PRK15490 Vi polysaccharide bio 47.9 1.1E+02 0.0024 35.8 10.0 78 62-141 21-98 (578)
473 KOG0276 Vesicle coat complex C 47.8 2.9E+02 0.0063 32.3 12.6 46 271-324 648-693 (794)
474 TIGR00756 PPR pentatricopeptid 46.2 40 0.00087 21.8 4.0 28 671-698 2-29 (35)
475 KOG0292 Vesicle coat complex C 45.6 6.7E+02 0.015 30.9 19.6 23 485-507 911-933 (1202)
476 PF10037 MRP-S27: Mitochondria 45.2 2.5E+02 0.0055 31.8 12.0 93 267-360 73-167 (429)
477 PF14863 Alkyl_sulf_dimr: Alky 45.0 62 0.0013 30.2 6.1 50 117-167 70-119 (141)
478 PF07946 DUF1682: Protein of u 44.9 1.2E+02 0.0026 33.1 9.4 19 771-789 230-248 (321)
479 KOG0163 Myosin class VI heavy 44.8 6.3E+02 0.014 30.4 24.7 19 618-636 764-782 (1259)
480 cd02680 MIT_calpain7_2 MIT: do 44.3 44 0.00095 27.3 4.3 17 129-145 18-34 (75)
481 PF11846 DUF3366: Domain of un 43.7 1.1E+02 0.0024 30.4 8.4 49 687-738 129-177 (193)
482 KOG4322 Anaphase-promoting com 43.6 5.2E+02 0.011 29.0 16.5 208 43-253 236-472 (482)
483 PRK14552 C/D box methylation g 43.1 5.5E+02 0.012 29.1 14.8 25 771-795 296-320 (414)
484 cd02682 MIT_AAA_Arch MIT: doma 42.7 1.4E+02 0.0031 24.4 7.0 67 667-771 4-70 (75)
485 PF04097 Nic96: Nup93/Nic96; 42.1 7E+02 0.015 30.1 24.7 43 479-542 413-455 (613)
486 PF09477 Type_III_YscG: Bacter 41.5 2.5E+02 0.0054 24.8 11.3 83 90-178 13-95 (116)
487 TIGR03362 VI_chp_7 type VI sec 40.6 5E+02 0.011 28.0 15.1 37 129-166 111-147 (301)
488 PF04090 RNA_pol_I_TF: RNA pol 40.2 3.9E+02 0.0085 26.7 13.6 66 480-545 41-107 (199)
489 KOG0066 eIF2-interacting prote 39.7 27 0.00059 38.3 3.3 16 989-1004 151-166 (807)
490 PF13812 PPR_3: Pentatricopept 39.5 71 0.0015 20.6 4.3 25 86-110 4-28 (34)
491 PF05053 Menin: Menin; InterP 39.4 2.6E+02 0.0057 32.4 10.8 85 36-143 255-344 (618)
492 PF13226 DUF4034: Domain of un 39.1 5E+02 0.011 27.6 12.3 36 205-240 115-150 (277)
493 KOG0804 Cytoplasmic Zn-finger 38.9 4.7E+02 0.01 29.3 12.2 48 670-717 239-289 (493)
494 PF05053 Menin: Menin; InterP 38.3 3.1E+02 0.0067 31.8 11.1 147 363-566 275-425 (618)
495 PF13934 ELYS: Nuclear pore co 38.0 4.3E+02 0.0092 27.1 11.6 140 550-723 50-194 (226)
496 KOG4364 Chromatin assembly fac 37.9 1.6E+02 0.0035 34.4 8.9 89 813-901 271-365 (811)
497 PF13025 DUF3886: Protein of u 37.6 1.1E+02 0.0023 24.6 5.3 54 826-883 16-69 (70)
498 PTZ00121 MAEBL; Provisional 37.6 4.2E+02 0.009 34.6 12.8 86 796-881 1138-1223(2084)
499 COG5536 BET4 Protein prenyltra 37.4 5.1E+02 0.011 27.2 12.8 176 35-214 63-256 (328)
500 KOG3654 Uncharacterized CH dom 37.2 2.1E+02 0.0046 32.1 9.3 66 809-876 390-455 (708)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-105 Score=882.90 Aligned_cols=955 Identities=39% Similarity=0.636 Sum_probs=845.0
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|.+||+||++++|+.||+.++. +....|.++..+++.+++.|+.+|..+|.....+..+++.+..|+.+|+.+-+++.
T Consensus 47 ~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m 125 (1018)
T KOG2002|consen 47 IALEYYKQGKTEEFIKILESGLI-DANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDM 125 (1018)
T ss_pred HHHHHHhcccHHHHHHHHHhhhh-cccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhc
Confidence 58999999999999999999984 34556999999999999999999999999998888999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhH
Q 001618 81 HEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~l 158 (1043)
.....|+..+..++..|.. +.|...|..++..+|+|+.++++.|.+.+..|+|..|+.+|++++.++|...+.+++++
T Consensus 126 ~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi 205 (1018)
T KOG2002|consen 126 YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI 205 (1018)
T ss_pred cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh
Confidence 9999999999999888876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 159 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
|.|++++|+.+.|+..|+++++++|.++.++..||.+.+...+...+..++..+.+++..+|.+|.+++.|+..|+..|+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
|..+..+...++......+..+++++++|++|+.+|+|++|..+|..++.. .+..+..+++++|++|+..|+++.|+.
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHH
Confidence 999999999999988777888899999999999999999999999999974 223358889999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLG----QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 394 (1043)
+|+++++..|++.+++..||.+|...+ ..+.|..++.+++...|.+..+|+.++.++..++...++.+|..++.++
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 6789999999999999999999999999998888888899999999988
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCC
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1043)
...+..+++++++++|..++..|++..|..+|..++..+......+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de--------------------------------- 490 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE--------------------------------- 490 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc---------------------------------
Confidence 88877899999999999999999999999999999874210000000
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
......+..|++|+++...+++..|...|..++..+|.++++|+++|.+....++..+|..+++.++..+..+|.+|..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 01234778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 633 (1043)
|.+|+...+|..|.+.|..+++.... +|+|++++|||+ |+...+...++++.+++.+++|+++|.++|..+|.|.++.
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 99999999999999999988876543 599999999998 9999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
+++|+|++..|++.+|+.+|.++++... +++++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHh-----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 9999999999999999999999999885 68899999999999999999999999999999988888999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLH 793 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~ 793 (1043)
+|+..|++.+|..++.+|+++.|.++.+.||+|+++.+.+...+...++++++|..++.+++.|+++|.+|+...+.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~--- 801 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK--- 801 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001618 794 GFDEKKINTHVEYCKHLLDAAKIHREAAER-EEQQNRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 869 (1043)
Q Consensus 794 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1043)
+++++.+.+++++|+++++++..|...+++ .|++.++|+ +.+++.++.++++|.++|++..+++.++++++.+...
T Consensus 802 r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~t 881 (1018)
T KOG2002|consen 802 RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERT 881 (1018)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999887764 445554555 4555566677788888777777777666676666666
Q ss_pred HHHHHHHHHHHhhhccCchh-hhhhccCCCCccccccccccccCCcccccccCcC-CcccchhhhhcccCCCCCCcchhc
Q 001618 870 QQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSR-SHYETEYAEADMMDYREEPEDEDA 947 (1043)
Q Consensus 870 ~~~~~~~~~~e~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1043)
+..+.+.+-+++|+++.... |||..+ ++..++||+||+|||+++++ .++..+++|.+.+++...+.....
T Consensus 882 k~~~~~~~~~e~~k~s~g~~~~~~~~~--------~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~ 953 (1018)
T KOG2002|consen 882 KEILKLPEIEEEKKKSGGGGRKRGDDS--------DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAF 953 (1018)
T ss_pred HHHHhccchHhhhhhcCCCCCCCCCcC--------cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhh
Confidence 66778888899997766544 333221 24445566666555533333 333455566777778778887777
Q ss_pred cCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001618 948 SMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS-DVDDEMAPSITAARRRRALSESDDDEPF 1009 (1043)
Q Consensus 948 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1043)
++.+++++.+. ...+.+++++.++ ..+..++.++ |+|.|..+++. .||++++|.|||..++
T Consensus 954 ~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 954 ISTSERSDDDVVKKAESDSDDDSQDSREASEESDRPIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred hcccccccccccCcccCCcccccccccchhhccCCccccccccCcccc-cccchhhccccccccc
Confidence 77765333222 2233444555665 7888898887 77777788888 9999999999987653
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.7e-51 Score=519.35 Aligned_cols=678 Identities=21% Similarity=0.249 Sum_probs=509.8
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|..|+.+|++++|+.+++.++...+ ....++..++.++...|... +|+..|++++..+|
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~-----------~A~~~~~~a~~~~p 224 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE-----------LALAAYRKAIALRP 224 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHhhCC
Confidence 36778888999999988888765432 22346667777777777555 66666666666666
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
.++.+++.++.+++..|++++|...|+.++...|.++.+++..|.+++..|++++|+..|++++..+|.. ...++.+|.
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY-LPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666665 334555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHH
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (1043)
++..+|++++|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++..++.++...|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666666665555555555555555 555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHH----------------------------------HHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE----------------------------------KAGLYYMAS 286 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~----------------------------------~A~~~~~~a 286 (1043)
+|..++..++... |....++..+|.++...|+++ +|+..+...
T Consensus 381 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555555554332 333344444444444444444 444444444
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366 (1043)
Q Consensus 287 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 366 (1043)
.. ..|.....+..+|.++...|++++|+.+|.+++..+|++..++..++.++...|++++|+..|++++...|.+..
T Consensus 458 ~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (899)
T TIGR02917 458 EK---KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534 (899)
T ss_pred HH---hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 43 346667788888999999999999999999999989988889999999999999999999999999988898888
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccch
Q 001618 367 AFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 445 (1043)
Q Consensus 367 ~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (1043)
++..++.++ ..|++++|+..+.+++...+. ....+..++.++...|++++|+.++++++...+... .
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~ 602 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP-------E 602 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-------H
Confidence 999999988 888999999988888776443 356777888888888888888888888876432100 0
Q ss_pred hhhhhhhhHHH----hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHH
Q 001618 446 YVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 521 (1043)
Q Consensus 446 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 521 (1043)
........... ...+..+..+.. ..|.++.++..++.++...|++++|+.+|++++..+|++..++..++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00000000000 123333443333 45677888999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhc
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~ 601 (1043)
.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|.+++...|.+ ..+..++.+ +...
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~---- 749 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS---- 749 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC----
Confidence 999999999999999999999999999999999999999999999999999999887765 455667777 7777
Q ss_pred ccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHH
Q 001618 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 681 (1043)
Q Consensus 602 ~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~ 681 (1043)
|++++|+..+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.++.++|+++..
T Consensus 750 --------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 750 --------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLE 816 (899)
T ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887 678899999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 682 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 682 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
.|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|..+|+++++.+|.++.++++++.++
T Consensus 817 ~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 817 LKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred cCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 999 8899999999988 4566888999999999999999999999999999999999999999987
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-50 Score=512.97 Aligned_cols=680 Identities=22% Similarity=0.232 Sum_probs=534.9
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|..|+.+|++++|+..+..+.... .+....++..+|.+|...|+.. +|...|++++..+|
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~a~~~~~ 156 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLD--------DEGAAELLALRGLAYLGLGQLE-----------LAQKSYEQALAIDP 156 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCC--------chhhHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCC
Confidence 4788999999999999998764221 1244567888999999888666 89999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
.++.+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.++.
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~ 235 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALAT 235 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHH
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (1043)
++...|++++|...+.++++..|.+..+++..+.++...|+ +++|+..|.+++..+|.+..++..++.+++..|+++
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 99999999999999999999899888888888888888888 899999999999999888888888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
.|..++..++... |....++..++.++...|++++|+..+..++. ..+.....+..+|.++...|++++|+.+|
T Consensus 313 ~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 313 QAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred HHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998888654 55567788888888888888888888888876 55666777888888888888888888888
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 321 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
++++...|++..++..+|.++...|++++|+..|.+++...|........++.++ ..|++++|+..+.......|.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 463 (899)
T TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD--- 463 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Confidence 8888888888888888888888888888888888888888888888888888888 888888888888777654332
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCCCC
Q 001618 400 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVEL 475 (1043)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 475 (1043)
.+.++..+|.++...|++++|+.+|.+++...+... ............ ......+..+.. .
T Consensus 464 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~------~ 528 (899)
T TIGR02917 464 --NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKVLT------I 528 (899)
T ss_pred --CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH------h
Confidence 466778888888888888888888888876543110 000000000000 122333333332 4
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
.|.+..++..++.++...|++++|+.++.+++..+|.+...+..++.++...|++++|+.++++++...|.++.++..++
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777777777777788888888888877777777777777777777788888888888887777777777778888
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
.++...|++++|+..|++++...|. +..++..++.+ |... |++++|+..|.+++..+|++..++..
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888888888888888877776654 45566667777 6666 77778888888877777777777777
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
++.++...|++++|+.+++.+....| ..+.++..+|.++...|++++|+..|++++...|.+ .++..++.++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~ 746 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRAL 746 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHH
Confidence 77777777777777777777777665 556677777777777777777777777777764322 5666777777
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
...|++.+|...+++++...|++..+++++|.+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777765
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=410.25 Aligned_cols=582 Identities=17% Similarity=0.165 Sum_probs=509.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
++.|...|..+++..|.+..+++..|.+.+..|+|-.|+.+|..++..+|.. +...+++|.|+.++|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999875 567789999999999999999999999
Q ss_pred HHhCCCChhHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
++++|.+ ..++..||.+-.... .+..+...+.++...+|.|+.++..|+..++-.++ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 677788887766654 47789999999999999999999999999999999 9999999999888664
Q ss_pred C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh
Q 001618 221 Y---CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297 (1043)
Q Consensus 221 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 297 (1043)
. -...++.+|.+|..+|+|++|..+|-.+++..+.+ ....++.+|..|...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 3 34569999999999999999999999999765432 367789999999999999999999999998 667888
Q ss_pred hhHHHHHHHHHHcC----CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001618 298 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 368 (1043)
Q Consensus 298 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 368 (1043)
.....+|.+|...+ ..+.|..++.+++...|.+..+|..++.++....-+.. +.+|..++.+ .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999999886 67889999999999999999999999999887655544 8899888743 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccc
Q 001618 369 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 442 (1043)
Q Consensus 369 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 442 (1043)
.++|.++ ..|++..|...|..+...... . +......+.++++.++-..+++..|...|..++.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999887331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001618 443 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 522 (1043)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 522 (1043)
..|..+..+..+|.+....++..+|..+++.++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 467899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHcC--CChHHHHHHHHHhhhc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001618 523 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 588 (1043)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~~ 588 (1043)
+++....+..|..-|...++.-. .++.+...||++++.. +.+..|+..|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999887777665443 3566777888877653 4578999999999998887 7888888
Q ss_pred hhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001618 589 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 668 (1043)
Q Consensus 589 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 668 (1043)
+|.+ +-.. |++..|+.+|.++.+.-.++..+|.++|.||+.+|+|..|+..|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 8888 6666 999999999999998888888999999999999999999999999999887422 67
Q ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 001618 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 718 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~ 718 (1043)
+.++..||.+++..|.+.+|...+..++.. .+.++.+.+++|.+..+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 899999999999999999999999999998 456678888888887664
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-42 Score=442.27 Aligned_cols=623 Identities=17% Similarity=0.088 Sum_probs=505.3
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001618 37 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 116 (1043)
Q Consensus 37 ~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 116 (1043)
....|...+.+|...++.. .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~ 95 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS 95 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC
Confidence 3445666677777776555 99999999999999999999999999999999999999999999999999
Q ss_pred HHHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 117 VPAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 117 ~~a~----------------~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
+.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 96 NAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 7763 667888999999999999999999998887433233333444456999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---
Q 001618 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--- 257 (1043)
Q Consensus 181 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--- 257 (1043)
.+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 999999999999999999999 99999999999876554322211111111122222233333333222211111
Q ss_pred --------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 258 --------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323 (1043)
Q Consensus 258 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 323 (1043)
........+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+.+|+++
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112233568899999999999999999998 66788899999999999999999999999999
Q ss_pred HHHCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHH
Q 001618 324 LEIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFK 388 (1043)
Q Consensus 324 l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~ 388 (1043)
++.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..+|.++ ..|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999987642 2234578889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 389 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
+++...|. ...++..++.++. .+++++|+.++..+....+. .....
T Consensus 410 ~aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~----- 455 (1157)
T PRK11447 410 QALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI----- 455 (1157)
T ss_pred HHHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH-----
Confidence 99988654 4677888888875 46789999888764331100 00000
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 548 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (1043)
........+..+|.++...|++++|+.+|++++..+|+++.+++.++.++...|++++|+..+++++..+|.++
T Consensus 456 ------~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 456 ------ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred ------HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 00112345778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH---------HHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHH
Q 001618 549 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 619 (1043)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 619 (1043)
.+++.++.++...+++++|+..++++.......... ..+.++.. +... |++++|+.++
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l 596 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALL 596 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHH
Confidence 999999999999999999999999875432221111 12234445 5555 9999999987
Q ss_pred HHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 620 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 620 ~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
+ .+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++++|+..|+.++..
T Consensus 597 ~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 597 R----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred H----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 7 6899999999999999999999999999999999998 78999999999999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 700 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 4566888999999999999999999999999999887664
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.3e-42 Score=435.36 Aligned_cols=642 Identities=14% Similarity=0.119 Sum_probs=520.4
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH 81 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~ 81 (1043)
++.+-.+++.+-|.+.|.+++..++ +...++..++.+++..|+.. +|...++++++.+|+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~l~~l~~~~P~ 94 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKLLDRLSQLAPD 94 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHHHHHHHhhCCC
Confidence 3455677999999999999876644 23557778888888888776 999999999999999
Q ss_pred ChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHH
Q 001618 82 EPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACVEFNRGRYSDSLEFYKRAL 144 (1043)
Q Consensus 82 ~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~la~~~~~~g~~~~Al~~~~~~l 144 (1043)
++.++ +.+|.++...|++++|+..|++++..+|.+... ......+....|++++|+..|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll 174 (1157)
T PRK11447 95 SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLN 174 (1157)
T ss_pred ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHH
Confidence 98764 667888999999999999999999999887642 2233333445699999999999999
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------------HHhHHH
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------------AAGIRK 207 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------------~~~~~~ 207 (1043)
..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+. ......
T Consensus 175 ~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 175 ADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred HhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 999999 67899999999999999999999999987655432221111000001111 011233
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 208 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
|...+.+.....++.......++..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444333322222233456888999999999999999999754 7778999999999999999999999999999
Q ss_pred HhcCCCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 288 KEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 288 ~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
...+..+.. ......+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 854332221 112345588899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 357 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
++..+|.+..++..++.++..+++++|+.++..+....+.. ........+..+|.++...|++++|+.+|++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~- 489 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA- 489 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 99999999999999999995567899998886543322110 0011234567789999999999999999999998
Q ss_pred hhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC
Q 001618 433 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512 (1043)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 512 (1043)
..|.++.+++.+|.+|...|++++|+..|++++..+|+
T Consensus 490 ------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 490 ------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred ------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 56788999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC----------hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCC
Q 001618 513 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 582 (1043)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 582 (1043)
++..++.++..+...+++++|+.+++++....... ......++..+...|++++|+.+++ ..|. +
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~-~ 602 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPP-S 602 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCC-C
Confidence 99999999999999999999999998764322111 1123467888999999999999987 3344 5
Q ss_pred hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC
Q 001618 583 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662 (1043)
Q Consensus 583 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 662 (1043)
...++.+|.+ |... |++++|+..|++++..+|+++.++..++.++...|++++|+..|++++...|
T Consensus 603 ~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 603 TRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred chHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 5677889999 8888 9999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 001618 663 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIH 733 (1043)
Q Consensus 663 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~ka~~ 733 (1043)
+++.++..+|.++...|++++|+..|++++...+..+ ++.++..+|.++...|++++|+..|++++.
T Consensus 669 ----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 ----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999999998864332 245777889999999999999999999986
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-44 Score=378.28 Aligned_cols=454 Identities=20% Similarity=0.273 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.|+|.+|.+.++.+...||.+...+..++.++++..+++.....-..+++..|....++-.+|.++...|+++.|+.+|.
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
.++++.|+. .+.|+++|.|+...|+.+.|..+|..+++++|+...+...+|.++...|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 78899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHH
Q 001618 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 301 (1043)
...+|..||.++..+|+...|++.|+++++. +|....+|++||.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 9999999999999999999999999999965 588889999999999999999999999999998 6788999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
++|.+|+.+|..+-||.+|++++...|+.++++.++|.++...|+..+|..+|.+++.+.|+.+++..+||.++ .+|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
+.|..+|.+++..+|.. ...++++|.+|-++|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998773 78999999999999999999999999998
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
+.|....++.++|.+|-.+|+...|+.+|.+++..+|.+++++.+||.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 541 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
+++.|+.++++.++..++.-..+|..--+.+.+
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999887766655543333333
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-43 Score=371.42 Aligned_cols=460 Identities=20% Similarity=0.254 Sum_probs=322.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
.....+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++-++|.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~aN~ 125 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLANI 125 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHHHH
Confidence 334456666666666777777777776666666666666666666666666666666666666666666 5556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+-..|++..|+..|+.++++.|++.++|..+|.++...|+ ...|..+|..+++++|...
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~------------------ 184 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY------------------ 184 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh------------------
Confidence 6666666666666666666666666666666666666666 6666666666666665433
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
.+...+|..+-..|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..|+
T Consensus 185 -------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 185 -------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred -------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 3334455555555555555555555554 444555555555555555555555555555
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 401 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 401 (1043)
++++++|+..++|++||.+|...+.++.|+..|.+++.+.|++
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------------------- 285 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------------------- 285 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------------------
Confidence 5555555555555555555555555555555555555555544
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhH
Q 001618 402 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 481 (1043)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1043)
..++.++|++|+.+|..+.|+..|++++. ..|..+.
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~ 321 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPD 321 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchH
Confidence 44555566666666666666666666666 4566777
Q ss_pred HHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
++.++|..+-..|+..+|..+|.+++..+|+++++..+||.++..+|.+++|..+|.+++..+|....+..+++.+|-++
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 77777777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
|++++|+.+|+.++.+.|. -..++.++|+. |-.. |+...|++.|.+++..+|....+..+||.+|.
T Consensus 402 gnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred ccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8888888888888877665 55677778888 7777 88899999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCH
Q 001618 642 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 685 (1043)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~ 685 (1043)
..|++.+|+..|+.++.+.| +.++++.|+.+++.--..+
T Consensus 468 DsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 99999999999999999988 8899999999997665443
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=366.19 Aligned_cols=614 Identities=11% Similarity=0.009 Sum_probs=432.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+..|+++++.+|+++.+++.++.+|+..|++++|+..+++++..+|.|...+..++.+ +++.+|+.+|++++..
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHh
Confidence 677777777777777777777777777777777777777777777777776666666554 6777777777777777
Q ss_pred CCCChhHHHHhHHHH--------HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001618 147 HPSCPGAIRLGIGLC--------RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218 (1043)
Q Consensus 147 ~p~~~~~~~~~lg~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 218 (1043)
+|.+ ..+++.++.. |.+.+....++. .+.+..+|......+.+..+|...++ +++++..+.++.+.
T Consensus 138 ~P~n-~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d---w~~Ai~lL~~L~k~ 211 (987)
T PRK09782 138 QKAC-DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ---WSQADTLYNEARQQ 211 (987)
T ss_pred CCCC-hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC---HHHHHHHHHHHHhc
Confidence 7777 5556666665 444433334443 22222223334445555777777766 77777777777777
Q ss_pred CCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC-
Q 001618 219 YPYCAMALNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF- 296 (1043)
Q Consensus 219 ~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~- 296 (1043)
.|.+...+..|+.+|.. .++ +.+..++...+ ..++.++..++..|...|+.++|...+...-......|..
T Consensus 212 ~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 212 NTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 77777777777776666 355 55555543221 2455667777777777777777776666543322222222
Q ss_pred ----------------------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Q 001618 297 ----------------------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 297 ----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 348 (1043)
..+...++..+...+.+..+..+ +...|.++. ...........+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchh
Confidence 22333445556666666644422 445565553 222222233447777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---HHHHHH
Q 001618 349 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQ 424 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~ 424 (1043)
++...+.......|.+...+..++.+. ..|+..+|...|+.+... +. ....+..+...++.+|...+. ...+..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 888888887777788888888888888 888888888888877764 21 112245566678888887776 333333
Q ss_pred HHHHHHc--chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCc--hhHHHHhHHHHHHhcCChHHHH
Q 001618 425 SFKDALG--DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 500 (1043)
Q Consensus 425 ~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~ 500 (1043)
+...+-. .+.|..-+.+. ......+.. .+...|. .+.+++++|.++.. +++.+|+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGI--------------ADNCPAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred hccccccchhHHHHhhhhhh--------------hhhHHHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 3111100 00000000000 000111111 1124466 88999999999998 8999999
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCC
Q 001618 501 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 501 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
..|.+++...|+.. ..+.++.++...|++++|+..|++++...|. ...+..+|.++...|++.+|..+|.+++...|.
T Consensus 497 ~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 497 YAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred HHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 99999999999854 4666777788999999999999998777555 456789999999999999999999999998765
Q ss_pred CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHh
Q 001618 581 KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 581 ~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 660 (1043)
. ......++.. .... |++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++...
T Consensus 575 ~-~~l~~~La~~-l~~~------------Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 575 D-NALYWWLHAQ-RYIP------------GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred c-HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 3333333333 3334 8999999999999999996 8899999999999999999999999999999
Q ss_pred cCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 661 p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
| +++.++.++|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...|++++.+.|++..
T Consensus 640 P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 640 P-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 8 78999999999999999999999999999998 5677999999999999999999999999999999999999
Q ss_pred hhhHHHHHH
Q 001618 741 LRFDAGVAM 749 (1043)
Q Consensus 741 ~~~nla~~~ 749 (1043)
+.+..|.+.
T Consensus 713 i~~~~g~~~ 721 (987)
T PRK09782 713 ITPLTPEQN 721 (987)
T ss_pred hhhhhhHHH
Confidence 999888875
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=350.47 Aligned_cols=592 Identities=12% Similarity=0.004 Sum_probs=448.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
...++..|..+...|++++|+..|++++..+|+++.+++.++.+|+..|++++|+..+++++..+|.+ ...+..++.+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-ARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHh-
Confidence 34677889999999999999999999999999999999999999999999999999999999999988 4445545444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--------DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
+++++|+..|++++..+|++..++..++.+ |...+. ..+++. .+.+..+|....+...+..+|.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eq---Al~AL~--lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPV---ARAQLN--DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHH---HHHHHH--HhhhCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999998 555444 555555 4444444455566666799999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 313 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~ 313 (1043)
..|+++.|+.++.++++.. +........++.+|.. +++ +.+..++...+ .....++..++..|...|+.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHhCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999764 6667888899999988 477 88888866422 25677889999999999999
Q ss_pred HHHHHHHHHHHHH---CCCcHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHhC
Q 001618 314 RSALTNFEKVLEI---YPDNCETLKALGH-----------------------------IYVQLGQIEKAQELLRKAAKID 361 (1043)
Q Consensus 314 ~~A~~~~~~~l~~---~p~~~~~~~~la~-----------------------------~~~~~g~~~~A~~~~~~~l~~~ 361 (1043)
++|...+...-.. .|.+...++.++. .+...+.+.-+. +++...
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 339 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATL 339 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCC
Confidence 9999988875443 3444444444443 333344444332 223445
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccc
Q 001618 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441 (1043)
Q Consensus 362 p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (1043)
|.++.....++.....+...++........... +.....+..++......|++.+|..+|+.+..... ...+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-----~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-- 411 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQE-----PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG-DARL-- 411 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc-cccc--
Confidence 666542222222224466666666655544432 23578899999999999999999999999987311 0000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHH------HHHHhcCChHH---HHHHHHHHHHhCcC
Q 001618 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA------RLLEQIHDTVA---ASVLYRLILFKYQD 512 (1043)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la------~~~~~~g~~~~---A~~~~~~~l~~~p~ 512 (1043)
.. .+...-..++..- ..+..+.-...++ .-..-.|+..+ +...+..++...|.
T Consensus 412 ---~~-------~l~~~l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~ 473 (987)
T PRK09782 412 ---SQ-------TLMARLASLLESH--------PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP 473 (987)
T ss_pred ---CH-------HHHHHHHHHHHhC--------CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence 00 0000000000000 0000000000010 00112344433 44555556666677
Q ss_pred --cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001618 513 --YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 590 (1043)
Q Consensus 513 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg 590 (1043)
++.+|..+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..|++++...+. ...++.+|
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la 549 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAA 549 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHH
Confidence 89999999999987 899999999999999999865 3666677778999999999999998776443 34466778
Q ss_pred hHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001618 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 670 (1043)
Q Consensus 591 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 670 (1043)
.+ +... |++..|+.+|.+++..+|.+......++..+...|++++|+..|++++...| + +.
T Consensus 550 ~a-ll~~------------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~ 610 (987)
T PRK09782 550 NT-AQAA------------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-AN 610 (987)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HH
Confidence 77 7777 9999999999999999999887777777777788999999999999999997 4 78
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
+++++|.++..+|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|++++.++|+++.+++++|.++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 6777899999999999999999999999999999999999999999997
No 11
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-33 Score=348.25 Aligned_cols=698 Identities=14% Similarity=0.073 Sum_probs=558.7
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC-
Q 001618 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH- 81 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~- 81 (1043)
..|++.|++++|..+|..+....+.+ + ...+..+...+...+. +..|..++..+++..+.
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~-------~-~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~ 119 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPV-------D-EDAYVALFRLCEWKRA-----------VEEGSRVCSRALSSHPSL 119 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCC-------C-hhHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHcCCCC
Confidence 57899999999999999875532211 1 1123334444444443 34788889888877654
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHhHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIG 159 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~lg 159 (1043)
+......+...|.+.|+++.|...|+.+. +.+..+|..+...+.+.|++++|+.+|.++.... |+. .++..+.
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~--~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV--YTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHH
Confidence 34455667778889999999999999875 3467889999999999999999999999998754 554 5566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
..+...+++..+.+.+..++.... .+...+..|...|.+.|+ ++.|..+|..+. ..+...|+.+...|...|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhHHHHHHHHhCCC
Confidence 777888999999999988887543 356678888899999998 999999998754 3466789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
+.+|+.+|..+.... ...+..++..+..++...|+.+.|.+++..+... .......++..+...|.+.|++++|..
T Consensus 269 ~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 269 CLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999998653 2335577888889999999999999999998864 223446778999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 395 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 395 (1043)
+|+.+.. .+...|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|..++..+.+.
T Consensus 345 vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~-- 418 (857)
T PLN03077 345 VFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERK-- 418 (857)
T ss_pred HHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHh--
Confidence 9998743 457789999999999999999999999987643 6554 444444556 999999999998877654
Q ss_pred hcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCC
Q 001618 396 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 475 (1043)
Q Consensus 396 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1043)
+...+..+++.+...|.+.|++++|...|++...
T Consensus 419 --g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------------------- 452 (857)
T PLN03077 419 --GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-------------------------------------------- 452 (857)
T ss_pred --CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------------------------------------------
Confidence 4445678899999999999999999999987543
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSML 554 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 554 (1043)
.+...|..+...|...|+..+|+.+|++++...+.+..++..+...+...|..+.+..++..++... ..+..+...+
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 2456788899999999999999999999987655567788888888999999999999999988865 3445677788
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc-cHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAA 633 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~ 633 (1043)
..+|.+.|++++|...|... .++..+|..+... |... |+.++|+.+|+++...... |..++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCCcccH
Confidence 99999999999999999876 3478889899988 8888 9999999999999986533 66678
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
..+...+.+.|.+++|..+|+.+.+..+- ..+..+|..+..+|.+.|++++|.++++.+ +..+++.+|..|..
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi---~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ 665 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSI---TPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Confidence 88888999999999999999999965531 135689999999999999999999997765 45778999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLH 793 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~ 793 (1043)
+|...|+.+.+....++++++.|++...+..++.+| ...+++. .+..++..+.+...-.....+|...... .|
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y-----a~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~-~~ 738 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY-----ADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGK-VH 738 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH-----HHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCE-EE
Confidence 999999999999999999999999999999999988 2233333 3446666666666666677777776554 34
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001618 794 GFDE-KKINTHVEYCKHLLDAAKIHREA 820 (1043)
Q Consensus 794 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 820 (1043)
.|.. ++.|+....+..+|..+..++.+
T Consensus 739 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 739 AFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 4444 36777778888877777666543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.5e-31 Score=318.69 Aligned_cols=436 Identities=15% Similarity=0.132 Sum_probs=350.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 163 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~ 163 (1043)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.++...|++++|+..+.+++.++|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 34667899999999999999999999999995 7789999999999999999999999999999999 678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 001618 164 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 243 (1043)
Q Consensus 164 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 243 (1043)
.+|++++|+..|..++.+++.+......+..... ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654432222111111 22345556667777887766666666644221 111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 244 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......+....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1112111 12233334445555443 33578999999999999643335677788999999999999999999999
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 321 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
++++..+|.+..++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999988654
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCch
Q 001618 400 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479 (1043)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1043)
....+.++|.++...|++++|+..|.+++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred hHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHH------HHHHHH-HHHHcCChhHHHHHHHHHHHHcCCChHHHH
Q 001618 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAA-IAKARNNLQLSIELVNEALKVNGKYPNALS 552 (1043)
Q Consensus 480 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (1043)
+.++..+|.++...|++++|+..|++++.+.|..... +...+. ++...|++++|+.++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999998864322 222222 333469999999999999999999999999
Q ss_pred HHHHHhhhccchHHHHHHHHHhhhcCCC
Q 001618 553 MLGDLELKNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
.+|.++...|++++|+..|++++.+...
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.4e-31 Score=317.59 Aligned_cols=444 Identities=17% Similarity=0.130 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 40 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119 (1043)
Q Consensus 40 ~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 119 (1043)
.+..+|..|+..| +|.+|+..|++++...|+ +..++.+|.+|+..|++++|+..|.+++..+|++..+
T Consensus 129 ~~k~~G~~~~~~~-----------~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNK-----------DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3445555555555 555999999999999995 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
++.+|.++...|+|++|+..|..++..++.........+...+ ...+...+..++...|.+...+..++.++...
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 9999999999999999999998887776655222111111111 13455667777788888777777777654322
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
. .......+......+|.....+..++..+. ..+.|++|+.+|+.++......|....++..+|.++...|++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 272 R----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred c----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 1 222233344555566666555566554433 357899999999999987655677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
++|+..|.+++. ..|....+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 348 ~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999997 67888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhh
Q 001618 357 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 435 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (1043)
++.++|++..+++.+|.++ ..|++++|+..|.+++...|. .+.+++.+|.++...|++++|+..|.+++.+.+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999 999999999999999987654 4789999999999999999999999999985321
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHH-HHHHhcCChHHHHHHHHHHHHhCcCcH
Q 001618 436 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQDYV 514 (1043)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~ 514 (1043)
... ... ....+...+ .++...|++++|+.+|++++.++|++.
T Consensus 500 ~~~------------------------------------~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 500 TKP------------------------------------MYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred ccc------------------------------------ccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 000 001 112223333 344457999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH
Q 001618 515 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (1043)
.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999887555
No 14
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=1.4e-28 Score=274.30 Aligned_cols=648 Identities=15% Similarity=0.120 Sum_probs=453.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
|++++|+.++.++++++|.++.+|+.+|.+|-++|+.++|...+-.+-.++|++...|..++.....+|++..|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 143 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 143 ~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
+++.+|.+ ....+..+.+|.++|+...|...|.+++...|.. ... -...+..+...++ -+.|+..+..++.
T Consensus 233 AI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s 308 (895)
T KOG2076|consen 233 AIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS 308 (895)
T ss_pred HHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence 99999999 6667889999999999999999999999999921 111 2233455555555 5888888888887
Q ss_pred h--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------h---cCCCCCchHH-HHHHHHH
Q 001618 218 I--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSHS-YYNLARS 269 (1043)
Q Consensus 218 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~---~~~~~~~~~~-~~~la~~ 269 (1043)
. +-.....++.++.++.....++.+......... . ++..+.+..+ ...++.+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 3 333456778899999999999998888776654 1 1111112222 5555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHH
Q 001618 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 270 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~ 348 (1043)
....+...+++..+..--. -...+.+..++.++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred cccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 6666666666665543321 124556677999999999999999999999999886553 5679999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 349 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
.|+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......+++..|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999 9999999998887654211 11111223567788889999999998855
Q ss_pred HHHHHHHcchhhhhhcccccchhh-hhhh-----------hhHHH-----hhhhhhhhhhccC--CCCCCCCCchh----
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYV-IDAS-----------ASMLQ-----FKDMQLFHRFEND--GNHVELPWNKV---- 480 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~---- 480 (1043)
..-...+.........-+..+... .... ..... ......-..+.+. ...........
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 555544443221111100000000 0000 00000 0000000000000 00001111222
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHcCChhHHHHHHHHHHHH-----cCCChH
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD--YV----DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPN 549 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 549 (1043)
.....+..++.+.+++.+|..+...++....- +. ...+....+.+..+++..|..+++.++.. +|..+.
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 23345566788889999999888887763321 11 22233334566778899999999888887 555555
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCccc
Q 001618 550 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 629 (1043)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 629 (1043)
+|...-.+....++-.--...+..++...+..++...+..|.. .+.. +.+.-|+..|.++...+|++
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCC
Confidence 6654334444445444444455555555555445444445655 5555 78899999999999999998
Q ss_pred HHHHHHhHHHHHhcC----------CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 630 LYAANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 630 ~~a~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
|..-..+|..+.+.. ..-+++.++.+..+.-... +...+.+|+|.+|...|-..-|+.+|+++|...
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 887777777666531 3456666776666554311 356788899999999999889999999988874
Q ss_pred cCC--------CC--HHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 001618 700 YYN--------TD--AQILLYLARTHYEAEQWQDCKKSLLRAI 732 (1043)
Q Consensus 700 ~~~--------~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~ 732 (1043)
|.+ -+ -.+.++|..+|..+|+...|.+++++-+
T Consensus 851 p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 851 PKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 321 11 5677888888888888888888877643
No 15
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.9e-27 Score=252.67 Aligned_cols=597 Identities=16% Similarity=0.131 Sum_probs=447.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-++ ....+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999988888876543 344555666666
Q ss_pred HHHHhCCCChhHHHHhHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 142 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
.++...|.+ ..+|+..+. ....+.+.+.|+-.+.++++.-|.+.+.|+.|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 666666666 333333222 2234455566777777777777777777777665
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHH
Q 001618 195 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 272 (1043)
Q Consensus 195 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~ 272 (1043)
+. .|..|..+++++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 42 2777778888888888888888888888888888888888888777754322 23445667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 273 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352 (1043)
Q Consensus 273 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 352 (1043)
.|..-.+..+....+...-...+.-..|+.-++.+.+.+.++-|..+|..+++.+|....+|...+.+--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77777777776666654334455566788888888888888888888888888888888888888888778888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 353 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 353 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+|++++...|.....|...+..+ ..|+...|..++..+....|. +.+++.....+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 88888888888888888888877 778888888888887776554 467777777788888888888888888765
Q ss_pred chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc
Q 001618 432 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511 (1043)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 511 (1043)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2556777777777778888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhh
Q 001618 512 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 591 (1043)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~ 591 (1043)
++...|+.+|+++..+++.+.|...|...+...|.++.+|..++.+-.+.|....|..+|.++.-.+|. +...|+....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888777776 3333433332
Q ss_pred HHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 001618 592 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 671 (1043)
Q Consensus 592 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 671 (1043)
+ =+.. |+.+.|..+..++|+..|++...|..-..+.-+-++-..++..+.+. . .++.|
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchh
Confidence 2 2222 88888888888888888888777766666666666655555554443 2 46778
Q ss_pred HHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 672 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 672 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
++..|..+....+++.|.++|.++++..++. ..+|..+-..+...|.-++-.++|.+.....|.+...|-.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8888888888888888888888888884443 4455555566777787777788888888888877665443
No 16
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-28 Score=304.85 Aligned_cols=618 Identities=14% Similarity=0.049 Sum_probs=511.7
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q 001618 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 82 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 82 (1043)
.++..++.+..+..++..++..... ..+.+.+.|...|...|... .|..+|+++.. .+
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~n~li~~~~~~g~~~-----------~A~~~f~~m~~---~d 151 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPS--------LGVRLGNAMLSMFVRFGELV-----------HAWYVFGKMPE---RD 151 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCC--------CCchHHHHHHHHHHhCCChH-----------HHHHHHhcCCC---CC
Confidence 3456778888888888876543321 11236678888899888776 89999998753 46
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
..+|..+...|...|++++|+.+|.++.... ..+...+..+...+...+++..+..++..+++........++..+..+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 7899999999999999999999999998643 235666777777788889999999999999887654445678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 240 (1043)
|.+.|+++.|...|.++.. .+...|..+...|.+.|+ +.+|+.+|.++.... ..+..++..+...+...|+.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 9999999999999998743 356778999999999999 999999999998754 335667888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
.+.+++..+.... ...+..++..+...|.+.|++++|..+|..+.. + ....|..+...|.+.|++++|+.+|
T Consensus 306 ~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~-d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 306 LGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----K-DAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-CeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998753 234678899999999999999999999998642 2 3467999999999999999999999
Q ss_pred HHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001618 321 EKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 396 (1043)
Q Consensus 321 ~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 396 (1043)
..+.... |+ ...+..+...+...|+++.|..++..+.+.. ..+..++..|...| ..|++++|...|.++..
T Consensus 378 ~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 452 (857)
T PLN03077 378 ALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---- 452 (857)
T ss_pred HHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----
Confidence 9987653 54 4556666678899999999999999998875 34577888899999 99999999999886532
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCC
Q 001618 397 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476 (1043)
Q Consensus 397 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1043)
.+..+|+.+...|...|++.+|+.+|.+++.. ..
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------------------------------~~ 486 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------------------------------LK 486 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------------------------------------------CC
Confidence 23567889999999999999999999998752 23
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
| +...+..+...+...|..+.+..++..++.... .+...+..+...|.+.|++++|...|+.+ +.+...|..+.
T Consensus 487 p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI 561 (857)
T PLN03077 487 P-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILL 561 (857)
T ss_pred C-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHH
Confidence 3 445566666778899999999999999887542 34556678889999999999999999886 66788999999
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCc--ccHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAA 633 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~ 633 (1043)
..|...|+.++|+..|+++......++..++..+... |... |.+++|..+|+.+....+ .+...+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999987777788777777777 7777 999999999999985432 366889
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
..+..+|.+.|++++|..+++++- .. .++.+|..|-..+...|+.+.|....+++++. .|.++..+..|+.
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n 699 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCN 699 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHH
Confidence 999999999999999999999872 22 35788999988888899999999999999988 5667889999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHh
Q 001618 714 THYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
+|...|++++|.++.+.....
T Consensus 700 ~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 700 LYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHCCChHHHHHHHHHHHHc
Confidence 999999999999998877554
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.97 E-value=3.1e-26 Score=255.72 Aligned_cols=626 Identities=18% Similarity=0.194 Sum_probs=449.1
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH 81 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~ 81 (1043)
|...|.+|++++|..|+..++..++. ....+..||.+|-.+|+.. ++...+-.|...+|+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLLAAHLNPK 205 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHHHHhcCCC
Confidence 67788899999999999998765432 2346788999999999777 899999999999999
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHh
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLG 157 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~----~~~~~~~ 157 (1043)
+...|..++.....+|++.+|+-+|.++++.+|.+....+..+.+|.+.|++..|+..|.+++...|.. ....-..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999933 1223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH------------------
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------------ 217 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~------------------ 217 (1043)
.+..+...++-+.|+..++.++.... ...+.+..++.+++.... ++.++........
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 67788888888999999999998322 244556778888888777 7777776665544
Q ss_pred ----hC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 218 ----IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 218 ----~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
+. +.+..+ ..+..++......+....+.................++.++.+|...|.|..|+.+|..++
T Consensus 363 ~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11 111122 2344444444444444444444443332345667899999999999999999999999998
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---- 363 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---- 363 (1043)
... ...+..+|+.+|.||...|.++.|+.+|++++...|++.++...|+.++.++|+.++|++.+.....-++.
T Consensus 442 ~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 NRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred cCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 632 23346689999999999999999999999999999999999999999999999999999999987633322
Q ss_pred -----CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc----------------C--CC-------------------
Q 001618 364 -----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA----------------G--EE------------------- 400 (1043)
Q Consensus 364 -----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~----------------~--~~------------------- 400 (1043)
...+......++ ..|+.++-+.....++..+... + ..
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 234445556666 7777766444333322211000 0 00
Q ss_pred --------------------Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 401 --------------------VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 401 --------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
.. .+++..+..++...+.+++|..+...++....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~---------------------- 657 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI---------------------- 657 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh----------------------
Confidence 00 12222333444555555555555555443210
Q ss_pred hhhhhhhhhhccCCCCCCCCCchh-HHHHhHHHHHHhcCChHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHcCCh
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARNNL 530 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~ 530 (1043)
....+... .+-+....+-...+++..|..+++.++.. +|.....|...-.+....++-
T Consensus 658 ----------------f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 658 ----------------FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred ----------------hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00111212 33344445566779999999999999887 555555555333344444544
Q ss_pred hHHHHHHHHHHHHcCCC-hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHh
Q 001618 531 QLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 609 (1043)
Q Consensus 531 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 609 (1043)
.--...+..++...|.+ +......|..++..+.|..|+..|-++....|. ++...+.+|.. |...+.. +....+-
T Consensus 722 v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~q--r~v~~Rh 797 (895)
T KOG2076|consen 722 VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQ--RRVSNRH 797 (895)
T ss_pred HHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHH--HHHhhhH
Confidence 44455566666777777 667778888999999999999999999998887 44444556666 5554221 1111112
Q ss_pred hhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCC-------CCchhHHHhHHHHHH
Q 001618 610 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-------VQMPDVWINLAHVYF 680 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~lg~~~~ 680 (1043)
-..-+++.++.+..++.-. .-.+.+++|.+|-..|-..-|+.+|++++...|.+.. .-.-.+-+||..||.
T Consensus 798 ~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~ 877 (895)
T KOG2076|consen 798 AQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYK 877 (895)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhc
Confidence 3455677777766665544 7789999999999999999999999999998764311 113457899999999
Q ss_pred HccCHHHHHHHHHHH
Q 001618 681 AQGNFALAMKMYQNC 695 (1043)
Q Consensus 681 ~~g~~~~A~~~~~~a 695 (1043)
..|+...|..++.+-
T Consensus 878 ~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 878 KSGNMQLARQILEKY 892 (895)
T ss_pred cCCcHHHHHHHHHhh
Confidence 999999999987654
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=3e-25 Score=237.44 Aligned_cols=564 Identities=14% Similarity=0.120 Sum_probs=465.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHH
Q 001618 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 176 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 176 (1043)
++..+|..+++.+.+.+|.++.+|+.-|++--..|++..|..++.+..+..|.+ .++|+.-. ++...+.|..+.-
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-eDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-EDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-HHHHHHHH----hcCChHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999998 77777543 4556667777777
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhh------------------------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 177 RALQLDPENVEALVALAVMDLQANE------------------------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 177 ~al~~~p~~~~a~~~la~~~~~~~~------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
.++...|.++..|+.-+.+.....+ ....+.|..++.++++..|.+...|..++.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL 419 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL 419 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888888777777665554433221 1114456677777777778777777766544
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHc
Q 001618 233 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKL 310 (1043)
Q Consensus 233 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~ 310 (1043)
.-|+.|.++++++.+.. |.+..+|..-+.+-...|+.+.-..++.+++..+.. ..-+...|+.-|..+-..
T Consensus 420 ----etYenAkkvLNkaRe~i---ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 420 ----ETYENAKKVLNKAREII---PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred ----HHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 45777888888887655 666688888888888888888888888888765532 233445577777777777
Q ss_pred CCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001618 311 GDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 386 (1043)
Q Consensus 311 g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 386 (1043)
|..--+..+...++.+. .+....|..-+..+.+.+-++-|+.+|..+++..|....+|...+.+- ..|..+.-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 77766666666666553 234578888999999999999999999999999999999999998888 88889988899
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001618 387 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466 (1043)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1043)
+++++...|+ ...+|...+..++..|+...|..++..+.+
T Consensus 573 lqkav~~~pk-----ae~lwlM~ake~w~agdv~~ar~il~~af~----------------------------------- 612 (913)
T KOG0495|consen 573 LQKAVEQCPK-----AEILWLMYAKEKWKAGDVPAARVILDQAFE----------------------------------- 612 (913)
T ss_pred HHHHHHhCCc-----chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-----------------------------------
Confidence 9999988776 356677778889999999999999999987
Q ss_pred ccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC
Q 001618 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 546 (1043)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (1043)
..|++..+|+.-..+......++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++.+++.+|.
T Consensus 613 --------~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 613 --------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred --------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 56788899999999999999999999999999998776 678888889999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccC
Q 001618 547 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 626 (1043)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 626 (1043)
...+|.++|+++..+++.+.|...|...+...|. .+..|+.|+.+ =-.. |...+|..+++++.-.+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakl-eEk~------------~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKL-EEKD------------GQLVRARSILDRARLKN 749 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHH-HHHh------------cchhhHHHHHHHHHhcC
Confidence 9999999999999999999999999999998887 66667777666 3333 88999999999999999
Q ss_pred cccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHH
Q 001618 627 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 706 (1043)
Q Consensus 627 P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 706 (1043)
|.+...|.....+-.+.|+.+.|...+.++++..| .+...|..-.+..-.-++-..++.. ++++ ..|+.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-----~sg~LWaEaI~le~~~~rkTks~DA----Lkkc--e~dph 818 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECP-----SSGLLWAEAIWLEPRPQRKTKSIDA----LKKC--EHDPH 818 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccchhHHHHHHhccCcccchHHHHH----HHhc--cCCch
Confidence 99999999999999999999999999999999998 4455666666666666666666666 5552 55689
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 746 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla 746 (1043)
++...|+.++...+++.|.++|.++++.+|++..++-.+-
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 9999999999999999999999999999999887765543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=7e-27 Score=284.96 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=333.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
+.+++. .+..|-++....-...++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445555 5566777777777788888999999999999999888888888899999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
.+ ..++..++.++...|++++|+..+++++..+|++.. +..+|.++...|+ +.+|+..+++++..+|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667889999999999999999999999999999999 9999999999988 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhcCCCCCCh--
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYH-----SKGDY---EKAGLYYMASVKEINKPHEFI-- 297 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~-----~~g~~---~~A~~~~~~a~~~~~~~~~~~-- 297 (1043)
++.++...|..+.|+..++.+...+.. ..........+..+.. ..+++ ++|+..++.++...+..|...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888766531100 0000112222222222 22334 778888888886544444332
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001618 298 --FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 370 (1043)
Q Consensus 298 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~ 370 (1043)
.+.+....+++..|++++|+..|++++...|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 2222212344677999999999999988764322 244446889999999999999999998887765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhc
Q 001618 371 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 439 (1043)
Q Consensus 371 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 439 (1043)
++.++ ..+++++|+..+..+....|... .+ ....++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999888877654210 00 1134566777788888888888888888776
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHH
Q 001618 440 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 519 (1043)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 519 (1043)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 446677788888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHH
Q 001618 520 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 552 (1043)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (1043)
++.++...|++++|...++.++...|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888888888888776544
No 20
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-27 Score=252.17 Aligned_cols=465 Identities=14% Similarity=0.066 Sum_probs=308.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001618 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 305 (1043)
++.-...+...|+|++|.+...+++... |.+..+++....++...+.|++|+.+.+.-.. ........+..++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHH
Confidence 3333445666778888888888877554 66678888888899999999999865554331 1111122378999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALD 385 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~ 385 (1043)
|.++.+..++|+.++. ..++.+..++...|++++++|+|++|+.+|+.+++.+.++.+.......+-.. .+..
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~ 160 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQ 160 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hhhh
Confidence 9999999999999998 34566678999999999999999999999999988776665544333222100 0000
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001618 386 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 465 (1043)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1043)
. +.++..+.. ...+.+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 161 ~--~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~---------------------- 215 (652)
T KOG2376|consen 161 V--QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN---------------------- 215 (652)
T ss_pred H--HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc----------------------
Confidence 0 012222221 133578999999999999999999999999988764211000000
Q ss_pred hccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC---ChhH--HHHHHHHH
Q 001618 466 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN---NLQL--SIELVNEA 540 (1043)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~--A~~~~~~a 540 (1043)
.-++......+...++.++..+|+..+|..+|..++..+|.+........+.+.... ++.. ++..++..
T Consensus 216 ------eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 216 ------EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 001223456788899999999999999999999999998876544433333322221 1111 22222222
Q ss_pred HHHcCC----------ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhh
Q 001618 541 LKVNGK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610 (1043)
Q Consensus 541 l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 610 (1043)
....++ ...++.+.+.+.+-.+....+.+.....-...|......+ +-.. +... ..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~ 355 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EK 355 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HH
Confidence 222211 1235556666666667667666666554333333222222 1111 1111 14
Q ss_pred hHHHHHHHHHHHHccCccc-HHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhHHHhHHHHHHHccCHHH
Q 001618 611 HLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFAL 687 (1043)
Q Consensus 611 ~~~~A~~~~~~~l~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~ 687 (1043)
.+.+|..++......+|.+ ....+.++++.+.+|++..|+.++..++...-.+ .....|.+--.+-..|+..+..+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 6889999999999999997 7778888999999999999999999444221100 001344455555566778888888
Q ss_pred HHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 688 AMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 688 A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
|...+..++..|..... -.++..++..-.+.|+-.+|...++.+++.+|+|..+...+..+|
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999988754332 444556677777789999999999999999999988766655554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=9.8e-26 Score=274.92 Aligned_cols=410 Identities=12% Similarity=0.001 Sum_probs=341.1
Q ss_pred HHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001618 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 121 (1043)
Q Consensus 42 ~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 121 (1043)
.....+....|... +|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus 19 ~d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 19 ADWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33455556666555 9999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
.++.++...|++.+|+..+++++...|++ .. ++.+|.++...|++.+|+..|++++..+|++..++..++.++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999 55 89999999999999999999999999999999999999999988887
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhhcCCCCCch----HHHH
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTKS----HSYY 264 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~~~~~~~~----~~~~ 264 (1043)
.+.|+..+.++.. .|.... ....+..+.. ..+++ ++|+..++.++...+..|... .+.+
T Consensus 166 ---~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 ---SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ---hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 8889999987765 544211 1222222222 22334 678888888887644444332 2223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHH
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHI 340 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~ 340 (1043)
....++...|++++|+..|++++...+..|.. +...+|.++...|++++|+.+|++++...|.+ ......++.+
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 32334568899999999999988632212333 34446999999999999999999999888765 4567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 404 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 404 (1043)
+...|++++|+.++.++....|. ...++..++.++ ..|++++|+..+++++...|. .+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~ 394 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQG 394 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 99999999999999999988763 235677888899 999999999999999887655 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHH
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 484 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1043)
++..+|.++...|++++|+..+++++. ..|++..+++
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~ 431 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHH
Confidence 999999999999999999999999998 5688999999
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHH
Q 001618 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 518 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 518 (1043)
.+|.++...|++++|...++.++...|+++.+..
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999876543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=9.1e-26 Score=269.11 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
......+..++..|++.+|+..+...+. ..|....+++.+|.+....|+++.|+..|++++..+|+++.++..+|.+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3455556667777777777777777776 5566666777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 419 (1043)
+...|++++|+..|++++.++|+++.++..++.++ ..|++++|+..+..+....|. ++..+..++ .+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-----~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-----RGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-----CHHHHHHHH-HHHHcCCH
Confidence 77777777777777777777777777777777777 777777777777766555432 234444333 36677777
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHH
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 499 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 499 (1043)
++|+..+..++... ++........++.++...|++++|
T Consensus 194 ~eA~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 194 PEDHDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHHHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHH
Confidence 77777777766521 112223334556667777777777
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhh
Q 001618 500 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 575 (1043)
Q Consensus 500 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 575 (1043)
+..|.+++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777764 6777777777777777777777777777777777777777777
Q ss_pred hcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHH
Q 001618 576 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655 (1043)
Q Consensus 576 ~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~ 655 (1043)
...|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++
T Consensus 312 ~l~P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 312 ATHPD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76665 45556666766 6666 7777777777777777777766666667777777777777777777
Q ss_pred HHHHhcC
Q 001618 656 VQEAASG 662 (1043)
Q Consensus 656 ~~~~~p~ 662 (1043)
+++..|.
T Consensus 378 al~~~P~ 384 (656)
T PRK15174 378 YIQARAS 384 (656)
T ss_pred HHHhChh
Confidence 7777663
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.2e-25 Score=268.07 Aligned_cols=325 Identities=12% Similarity=0.024 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.|++.+|..++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP- 220 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p- 220 (1043)
+++..+|++ ..++..+|.++...|++++|+..+.+++...|++..++..++. +...|+ +.+|+..+.+++..+|
T Consensus 135 ~Al~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 135 QAWLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCC
Confidence 999999999 6778999999999999999999999999999999988876644 677788 9999999999999876
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCCCC
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEF 296 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~ 296 (1043)
........++.++...|++++|+..+..++.. .|.++.+++.+|.++...|++++ |+..|++++. ..|..
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCC
Confidence 34445566788899999999999999999965 47778999999999999999986 8999999998 66788
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001618 297 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 375 (1043)
Q Consensus 297 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 375 (1043)
..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc
Q 001618 376 ISSDTGAALDAFKTARTLLKKA 397 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~ 397 (1043)
..|++++|+..|++++...|..
T Consensus 364 ~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999987764
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-25 Score=227.60 Aligned_cols=429 Identities=16% Similarity=0.161 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
..+-..|.-+++.|+|++|+++|..+|.+.|+. +..|-+++-||..+|++++-++...++++++|+.+.+++..+..+-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345566777778888888888888888888876 4567778888888888888888888888888888888888888887
Q ss_pred HhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 198 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 198 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
..|+ +.+|+....-..-+. -.+......+-..+-.+ +..-...-++ ....|..+.+.+.-. |+.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k-~nr~p~lPS~~fi~s--yf~---- 259 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLK-ENRPPVLPSATFIAS--YFG---- 259 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhc-ccCCCCCCcHHHHHH--HHh----
Confidence 7777 777665443221111 01111111111111111 1111111111 011122222111100 000
Q ss_pred HHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHHC----CCc---------HHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIY----PDN---------CETLKALGH 339 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~----p~~---------~~~~~~la~ 339 (1043)
.|..-+......+ ....+...-+.-.... ..|..|...+.+..... ..+ ..++...|.
T Consensus 260 -----sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 -----SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred -----hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 0000000000000 0000100001111111 13444444444332211 001 344455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH
Q 001618 340 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419 (1043)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 419 (1043)
.+.-.|++-.|...|..++.++|.+...|+.++.+ |....+.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~--------------------------------------y~d~~~~ 376 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAA--------------------------------------YADENQS 376 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHH--------------------------------------Hhhhhcc
Confidence 55555555566666666555555555555444444 4444455
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHH
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 499 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 499 (1043)
.+-...|.++.. ++|.++.+|+..|.++.-++++++|
T Consensus 377 ~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 377 EKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred HHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 555555555555 5567778888888888888888888
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCC
Q 001618 500 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 500 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
+.-|++++.++|+++-++..++.+..+++.+.++...|+.+...+|+.++++...+.++..+++|+.|.+.|.+++.+.|
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888766
Q ss_pred CCC-----hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHH
Q 001618 580 GKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 654 (1043)
Q Consensus 580 ~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~ 654 (1043)
..+ .-.++.-+.+.+... +++..|+.++.++++.+|.+-.++-++|.+..++|+.++|+++|+
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccchhhhhhhHhhhchh------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 521 112222222201111 889999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001618 655 QVQEAA 660 (1043)
Q Consensus 655 ~~~~~~ 660 (1043)
+...+.
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 998765
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.4e-25 Score=228.71 Aligned_cols=427 Identities=16% Similarity=0.152 Sum_probs=326.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.+-.+|+-++..|+|++|+++|..++..+|+.+..+..++-||...|+|++.++...+++.++|+. .-+++..+.++..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 445579999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHh-cCCHH
Q 001618 165 LGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI-Y-PYCAMALNYLANHFFF-TGQHF 240 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~-~g~~~ 240 (1043)
+|++.+|+.-..-..-+. -.+......+-.++.. .|+.....-+.. . |.-|.+ ..++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk--------~a~~ka~e~~k~nr~p~lPS~-~fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK--------QAMKKAKEKLKENRPPVLPSA-TFIASYFGSFHADP- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH--------HHHHHHHHhhcccCCCCCCcH-HHHHHHHhhccccc-
Confidence 999999987665432211 1222222222233322 233334444441 2 222211 112111110 0000
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC-CC---------ChhhHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQ 307 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~---------~~~~~~~la~~~ 307 (1043)
..........+.+...-+.-.+..+ .|..|...+.+........ .. ...++...|..+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000111222222222222233 5777777776655421111 11 256677888889
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 386 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 386 (1043)
+-.|++-.|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++++|+..|.++ ..+++++|+.-
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001618 387 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466 (1043)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1043)
|++++.+.|. ....+..++++.++.+.++++...|+.++.
T Consensus 417 F~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk----------------------------------- 456 (606)
T KOG0547|consen 417 FQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK----------------------------------- 456 (606)
T ss_pred HHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 9999998776 477888899999999999999999999988
Q ss_pred ccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC------cHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 001618 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNE 539 (1043)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~ 539 (1043)
..|..+.++...|.++..+++++.|++.|..++.+.|. ++..+...+.+.. -.+++..|+.++++
T Consensus 457 --------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 457 --------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred --------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 45788999999999999999999999999999999988 5555555554433 34899999999999
Q ss_pred HHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCC
Q 001618 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 540 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
+++++|.+..++..||.+.+++|+.++|+++|++++.+..
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=4.2e-22 Score=243.53 Aligned_cols=544 Identities=11% Similarity=0.014 Sum_probs=326.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 144 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~~l 144 (1043)
.++..++..+.-.+ +...++..-..+...|++.+|+.+|+.+...+. .+...+..+...+...|.+.+|+.+|..+.
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 34444444443322 333444445555667777777777777765542 233334444455666677777777766654
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-Cc
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 222 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~ 222 (1043)
. |+ ...|..+..++...|+++.|..+|..+.+.... +...+..+...|.+.|+ ++.|..+|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 3 43 345666666677777777777777777665432 55666677777777776 7777777777766542 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 302 (1043)
..+|..+...|.+.|++++|..+|..+.... ...+..+|..+...|.+.|++++|..+|..+.............+..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 6677777777777777777777777776432 12335667777777777777777777777776421111222455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-hcC
Q 001618 303 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGELL-ISS 378 (1043)
Q Consensus 303 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~-~~~ 378 (1043)
+...|.+.|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|+.+|.++... .| +...|..+...+ ..|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC
Confidence 7777777777777777777776654 345667777777777777777777777777654 24 355666666666 777
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
++++|..++..+.+. +...+..+++.+...|.+.|++++|..+|+.+...+
T Consensus 664 ~~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------- 714 (1060)
T PLN03218 664 DLDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------- 714 (1060)
T ss_pred CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 777777777665542 344456677777777777777777777777765421
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
..| +...|..+...|.+.|++++|..+|..+... .|+ ..+|..+...+...|+++.|..+
T Consensus 715 ----------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 715 ----------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred ----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 122 4456777777777777777777777776653 333 55666666777777777777777
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHH
Q 001618 537 VNEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 615 (1043)
Q Consensus 537 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 615 (1043)
+..+++.... +..++..+..++. +.+.+|.......+... .+.. +... +....|
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~A 831 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWA 831 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHH
Confidence 7777665422 2223333322221 23455544443333221 1111 1111 345567
Q ss_pred HHHHHHHHccCcc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 616 KELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 616 ~~~~~~~l~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
+.+|++++...-. +...+..+..++...+....+..++..+... +...+...|..+.+.+.. ...+|..+|+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~----~~~~~~~~y~~Li~g~~~--~~~~A~~l~~e 905 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS----ADSQKQSNLSTLVDGFGE--YDPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC----CCCcchhhhHHHHHhhcc--ChHHHHHHHHH
Confidence 7777777765421 3344444444555555555555444443221 122455566666666522 12467777777
Q ss_pred HHHHh
Q 001618 695 CLRKF 699 (1043)
Q Consensus 695 al~~~ 699 (1043)
+...-
T Consensus 906 m~~~G 910 (1060)
T PLN03218 906 AASLG 910 (1060)
T ss_pred HHHcC
Confidence 77654
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=9.8e-22 Score=240.35 Aligned_cols=545 Identities=13% Similarity=0.055 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRA 178 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 178 (1043)
..++.+++..+...+ +...++.+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|...+|...|..+
T Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 354 ENSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 334444444444333 44555555566778999999999999998776432 1333445666778889999999999877
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001618 179 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257 (1043)
Q Consensus 179 l~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 257 (1043)
.. | +...|..+...+...|+ ++.|..+|..+.... +.+..++..+...|...|+++.|..+|+.+.... ..
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~ 504 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VE 504 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CC
Confidence 54 4 56778888888888888 999999999998865 3467899999999999999999999999998643 23
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHH
Q 001618 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCET 333 (1043)
Q Consensus 258 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~ 333 (1043)
.+..+|..+...|.+.|++++|+.+|..+... ........|..+...+.+.|++++|..+|..+... .| +..+
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vT 581 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHIT 581 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHH
Confidence 45789999999999999999999999998753 22234577999999999999999999999999763 34 4678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 001618 334 LKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 411 (1043)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~ 411 (1043)
+..+...|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+..
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 8889999999999999999999998876 55778899999999 999999999999987653 44456788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH
Q 001618 412 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 491 (1043)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 491 (1043)
.+...|++++|..+|..+.+.+ .+.+..++..+...|.
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHHHHHHHHHHHH
Confidence 9999999999999999988742 1336678999999999
Q ss_pred hcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHHHHHhhhccchHHHH
Q 001618 492 QIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 568 (1043)
+.|++++|..+|+.+... .| +..+|..+...|...|++++|..+|..+.... ..+...+..+...+.+.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998763 44 47889999999999999999999999987654 334567777888999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~ 648 (1043)
.+|..+++....++...+..+..+ +. +.+.+|......++..++.++ ....+....
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~---------~~~n~w~~~ 830 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP---------QIENKWTSW 830 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc---------ccccchHHH
Confidence 999999998877777766655433 21 446777766666555443322 222234567
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhc-HHHHHHH
Q 001618 649 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKKS 727 (1043)
Q Consensus 649 A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~-~~~A~~~ 727 (1043)
|+.+|+++++..- ..+...+..+-.|+...+....+..+++... .-+..++..++..|-..+ |+ ..+|...
T Consensus 831 Al~lf~eM~~~Gi----~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l 902 (1060)
T PLN03218 831 ALMVYRETISAGT----LPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSL 902 (1060)
T ss_pred HHHHHHHHHHCCC----CCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHH
Confidence 9999999998762 1345666666677888888888777766533 223444556666666655 33 3579999
Q ss_pred HHHHHHhC
Q 001618 728 LLRAIHLA 735 (1043)
Q Consensus 728 ~~ka~~~~ 735 (1043)
|+.+....
T Consensus 903 ~~em~~~G 910 (1060)
T PLN03218 903 LEEAASLG 910 (1060)
T ss_pred HHHHHHcC
Confidence 99998773
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=7.9e-24 Score=257.94 Aligned_cols=445 Identities=13% Similarity=0.009 Sum_probs=355.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
.|..+...+...|++.+|+.+|..+...... ..+..++..+..++...++++.|..++..+... +..| ...++..+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~-~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEP-DQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCc-chHHHHHHH
Confidence 4566666777778888888888777643222 234567777888888888888888888777653 2223 356677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGA 382 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~-~~~~~~~ 382 (1043)
.+|.+.|+++.|..+|+.+.. | +...|..+...|.+.|++++|+.+|.++....+ .+...+..+...+ ..+....
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 888888888888888887743 2 566788888888888999999999988876542 2345556666666 7788887
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001618 383 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 462 (1043)
Q Consensus 383 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1043)
+..++..+.+. +...+..+++.+...|.+.|++++|...|+...
T Consensus 243 ~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------- 286 (697)
T PLN03081 243 GQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------- 286 (697)
T ss_pred HHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------------------------
Confidence 77766655443 334456788888999999999999999997643
Q ss_pred hhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001618 463 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541 (1043)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (1043)
+.+..+|..+...|...|++++|..+|.++.... ..+..++..+...+...|.+++|..++..++
T Consensus 287 --------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 287 --------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred --------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 2366788899999999999999999999987643 2246788899999999999999999999999
Q ss_pred HHc-CCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH
Q 001618 542 KVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 620 (1043)
Q Consensus 542 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 620 (1043)
+.. +.+..++..+...|.+.|+++.|...|+++.. ++..+|..|... |... |+.++|+.+|+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~ 415 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFE 415 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHH
Confidence 886 66778899999999999999999999998754 367788888888 8888 99999999999
Q ss_pred HHHccCcc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 621 RVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 621 ~~l~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
++...... |..++..+...+.+.|.+++|..+|+.+.+..+ ...+..+|..+..+|.+.|++++|.+++++ .
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g---~~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~ 488 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR---IKPRAMHYACMIELLGREGLLDEAYAMIRR----A 488 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---CCCCccchHhHHHHHHhcCCHHHHHHHHHH----C
Confidence 99886533 677889999999999999999999999987543 113567899999999999999999998765 3
Q ss_pred cCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 700 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
+..++..+|..|..+|...|+.+.|..++++++.+.|++...+..++.+|
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 56678889999999999999999999999999999999888877777776
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.5e-24 Score=218.58 Aligned_cols=460 Identities=18% Similarity=0.168 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHHHHhh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChH
Q 001618 62 EEHFILATQYYNKASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~a~~~la~~~~~~g~~~ 134 (1043)
...+.+|+..|+-+++ ..|+....-+.+|.+++++.+|.+|+++|+.++..-|.- ...+..+|..+.+.|.|+
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 4567789999987765 356777777889999999999999999999999988752 456778888999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCcHHHHHHHHHHHHHhh
Q 001618 135 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------------DPENVEALVALAVMDLQAN 200 (1043)
Q Consensus 135 ~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~a~~~la~~~~~~~ 200 (1043)
.|+..|+.+....|+. ..-+++..|++..|+-++-.+.|.+++.+ +|++.-....+-.-+++.-
T Consensus 294 dainsfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 9999999999999998 34577889999999999999999999875 2222111111111111111
Q ss_pred hHHhHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001618 201 EAAGIRKGMEKMQRAFEI-YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 279 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 279 (1043)
...+-..|......+.++ .|-. .-+|...-.++-..++.....+...+.-.+.+..+.+.|+++.|
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi-------------~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVI-------------APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhcccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 111112222222222222 1110 01111112233333333333344445667788889999999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (1043)
++++.-.-+. .+.....+-.+|..+++.. .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|+++
T Consensus 439 ieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 439 IEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9988765542 2222234455666666653 47889999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhh
Q 001618 358 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 436 (1043)
Q Consensus 358 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (1043)
+..+.....+++++|..+ .+|+.++|+.+|-+...++.+ +.++++.++.+|..+.+..+|+++|.++..
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s----- 586 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS----- 586 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----
Confidence 998888899999999999 999999999999998888766 489999999999999999999999999876
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHH
Q 001618 437 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 516 (1043)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 516 (1043)
.-|.++.++..||.+|-+.|+-.+|.+++-......|.+..+
T Consensus 587 --------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 587 --------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred --------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 568899999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH
Q 001618 517 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 587 (1043)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 587 (1043)
.-+|+..|....-+++|+.+|+++--+.|+......+++.++.+.|+|..|...|+.+-...|. +...+-
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclk 698 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLK 698 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHH
Confidence 9999999999999999999999999999999888889999999999999999999998888776 444443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1.6e-22 Score=240.54 Aligned_cols=469 Identities=10% Similarity=-0.029 Sum_probs=333.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001618 77 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156 (1043)
Q Consensus 77 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~ 156 (1043)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|++++|+.++++++...|.. .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~ll 106 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGLA 106 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHHH
Confidence 34566777777777777777777777777777777777775444466667777777777777777777222222 22333
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.+|.++...|+++.|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 346677777777777777777777777777777777777777766 777777777777777775544 4445555556
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-----
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG----- 311 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g----- 311 (1043)
+++.+|+..+++++... |.+...+..+..++...|-...|......--..+ ...+........+.-.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 66656777777777543 6666777777777777777777766554322111 00111111111111111111
Q ss_pred -------CHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-
Q 001618 312 -------DFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 375 (1043)
Q Consensus 312 -------~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~- 375 (1043)
-.+.|+..++.++...+.. ..+..-...++...|++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 2355777777777643332 2344456667788899999999999876544 33456777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhh-hhhcccccchhhhhhhhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 453 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 453 (1043)
..+++++|+.+|..++...+.. ...........|...|+..+++++|..++++.....|+ ....+...
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~---------- 408 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG---------- 408 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC----------
Confidence 9999999999999886643221 11222333567888999999999999999999875442 11111111
Q ss_pred HHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHH
Q 001618 454 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533 (1043)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 533 (1043)
...+|+-......++.++...|++.+|+..++.++...|.++..++.+|.++...|.+..|
T Consensus 409 -------------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 409 -------------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 1145677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 534 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
...++.+..++|.+..+...++.+++..++|.+|......++...|.+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999999999999999999999999887443
No 31
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.94 E-value=1.8e-22 Score=225.99 Aligned_cols=610 Identities=17% Similarity=0.124 Sum_probs=428.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
+...|...|-++++++|+...+|..+|.+|..--+...|..+|+++..++|.+..++-..+..|....+++.|..+.-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 46678888888899999988899999998888888888999999999999888888888888888888888888775555
Q ss_pred HHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 144 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 144 l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|. +..|+..|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 5555433 123355577778888888888888888888888888888888888888887 888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHHcCCHHH--------------------
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEK-------------------- 278 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~la~~~~~~g~~~~-------------------- 278 (1043)
..+.+..+.+....|.|.+++..+...+..... .....+++..++..+...|-+.+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 877787888888888887777766665521100 00111122222222211111111
Q ss_pred ---------------------------------------------------HHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 001618 279 ---------------------------------------------------AGLYYMASVKEINKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 279 ---------------------------------------------------A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 307 (1043)
+.+++-..+. -......|+++|..|
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHH
Confidence 2222222222 122256688888887
Q ss_pred HH--------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC
Q 001618 308 LK--------LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS 378 (1043)
Q Consensus 308 ~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~ 378 (1043)
+. ..+...|+.++.++++...++...|..||.+ ...|++.-|...|-+.+...|.....|.++|.++ ...
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 75 2234589999999999999999999999998 6679999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
+++.|-..|.++..+.|. +...|...+.+....|+.-++...|...-..+...+
T Consensus 865 d~E~A~~af~~~qSLdP~-----nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--------------------- 918 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPL-----NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--------------------- 918 (1238)
T ss_pred cHHHhhHHHHhhhhcCch-----hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc---------------------
Confidence 999999999999888766 467788888888999999999999987444321000
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV----------AASVLYRLILFKYQDYVDAYLRLAAIAKARN 528 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 528 (1043)
.......|+.-.......|+++ .|.-.+.+.+..+|++..+|...|.....++
T Consensus 919 -----------------ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 919 -----------------KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred -----------------ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHH
Confidence 0011222333333344444444 4444555666789999999999999999999
Q ss_pred ChhHHHHHHHHHHHHc------CCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcc
Q 001618 529 NLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 602 (1043)
Q Consensus 529 ~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~ 602 (1043)
.+..|.....+++.+- ..++.+--.+|.+++..|.++.|...+...-..... +. .-+.++ .|..
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk----- 1051 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK----- 1051 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH-----
Confidence 9999988888766542 233447778999999999999887776532211110 11 111122 2333
Q ss_pred cChhHHhhhHHHHHHHHHHHHccCcccH---HHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 603 RAPKLEATHLEKAKELYTRVIVQHTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 603 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~---~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
+++.++++.|++++.+..++. .....++++....+.-+.|...+-.+....| ....+.+.++-++
T Consensus 1052 -------ndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1052 -------NDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVY 1119 (1238)
T ss_pred -------hHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHH
Confidence 889999999999998765533 3444556666778888999999999988776 5677888888777
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
....+-.-.....+...+.- .... -.--+..-.++-..|+..-..+.++++++.+|+|+.+|-.|..
T Consensus 1120 ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1120 ILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 66554433333333332220 1110 0011223345566788888889999999999999999888874
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.5e-24 Score=217.02 Aligned_cols=478 Identities=18% Similarity=0.171 Sum_probs=311.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHh
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 157 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~~ 157 (1043)
.+++.++..|.....+.+|+..|+-+++. .|+....-..+|.++++..+|.+|+++|+-++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988864 576666778899999999999999999999999888763 334567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--------------CCcH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 223 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--------------p~~~ 223 (1043)
+|..+.+.|.|+.|+..|+.+++..|+.. +-+.|..+++..|+ .++..+.|.+++.+. |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88899999999999999999999999655 44566777788888 666677777777642 2211
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChh
Q 001618 224 MALNYLANHFF---FTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 298 (1043)
Q Consensus 224 ~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 298 (1043)
.+...+-.-.. ...+-..|.+..-.+.+... ..|..+..+-| .-..++.....+....
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw-----------------cle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW-----------------CLESLKASQHAELAID 420 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH-----------------HHHHHHHhhhhhhhhh
Confidence 11111111110 01111112222222222110 00111111111 1111110001111222
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
.-...+-.+.+.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+-..++.++.-++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 33455666777778887777776554433221 233444555555433 677777777777777777777777777766
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhH
Q 001618 376 -ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 454 (1043)
Q Consensus 376 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1043)
..|++++|...|+.++..... ..++++++|..+-.+|++++|+.+|-+...+
T Consensus 501 f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i---------------------- 553 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------------- 553 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------
Confidence 777777777777777654222 3567777777777777777777777665442
Q ss_pred HHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHH
Q 001618 455 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534 (1043)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (1043)
--+++.+++.++.+|..+.+..+|+++|.++..+-|+++..+..|+.+|-+.|+..+|.
T Consensus 554 ---------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 554 ---------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred ---------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 12466777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHH
Q 001618 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 614 (1043)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 614 (1043)
.++-......|.+.++.-.++..|+...-+++|+.+|+++.-+.|....+.+ .++.+ +... |+|.+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql-miasc-~rrs------------gnyqk 678 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL-MIASC-FRRS------------GNYQK 678 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH-HHHHH-HHhc------------ccHHH
Confidence 7777777777777777777777777777777777777777666554333322 22333 4444 77777
Q ss_pred HHHHHHHHHccCcccHHHHHHhHHHHHhcC
Q 001618 615 AKELYTRVIVQHTSNLYAANGAGVVLAEKG 644 (1043)
Q Consensus 615 A~~~~~~~l~~~P~~~~a~~~la~~~~~~g 644 (1043)
|+..|+..-...|.++..+..|..+....|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 777777777777777777766666666555
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.5e-22 Score=238.88 Aligned_cols=443 Identities=12% Similarity=-0.002 Sum_probs=354.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
-+.|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567779999999999999999755558888999999999999999999944455566666668899999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
|++++..+|++ +.++..++.++...++.++|+..+++++..+|.+... ..++.++...++ ..+|+..+++++..+
T Consensus 125 y~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~ 199 (822)
T PRK14574 125 WQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhC
Confidence 99999999999 6778899999999999999999999999999986554 555555544444 666999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc---------C---CHHHHHHHHHHHH
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASV 287 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~a~ 287 (1043)
|.+..++..+...+...|-...|.++...--..... ..........+.-..+. . -.+.|+.-+...+
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887653221110 00011111111112211 1 2455666777766
Q ss_pred HhcCCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 288 KEINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 288 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 362 (1043)
...+..|. ...+..-.-.++...|++.+++..|+.+.... |--.-+....|..|...+++++|+.+|..++...|
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 64444343 23445566677889999999999999887544 22345788899999999999999999999988652
Q ss_pred ------CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh----------cCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 363 ------RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK----------AGEEVPIEVLNNIGVIHFEKGEFESAHQS 425 (1043)
Q Consensus 363 ------~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (1043)
........|...+ ..+++++|..++.+.....|- .+.+.-......++.++...|++.+|...
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333346667777 999999999999998875441 01112256777889999999999999999
Q ss_pred HHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHH
Q 001618 426 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 505 (1043)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 505 (1043)
+++.+. ..|.++.++..+|.++...|.+..|...++.
T Consensus 439 le~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 439 LEDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999987 5689999999999999999999999999999
Q ss_pred HHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHH
Q 001618 506 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 551 (1043)
Q Consensus 506 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (1043)
++..+|.+..+...++.++..++++.+|......++..+|+++.+.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999998655
No 34
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=1.9e-22 Score=245.94 Aligned_cols=462 Identities=12% Similarity=0.003 Sum_probs=318.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
.|......+...|++.+|+.+|..+.... +.+..++..+..++.+.+++..|..++..+..........++..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45555555666666666666666665432 2244555555556666666666666666655543222234455555666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 242 (1043)
.+.|+++.|...|+.+.. | +...|+.+...|...|++++|
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~--------------------------------------~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R--------------------------------------NLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C--------------------------------------CeeeHHHHHHHHHHCcCHHHH
Confidence 666666666666555421 1 333445555555555555555
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322 (1043)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 322 (1043)
+.+|..+.... ...+..++..+..++...|....+..++..+.+. .......++..+...|.+.|++++|..+|+.
T Consensus 209 ~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 209 FALFREMWEDG--SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHhC--CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555555332 1223345566666666777777777776666542 1223345667777888888888888888776
Q ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001618 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 400 (1043)
Q Consensus 323 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 400 (1043)
+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|+++.|...+..+.+. +..
T Consensus 285 m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~ 357 (697)
T PLN03081 285 MP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP 357 (697)
T ss_pred CC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC
Confidence 53 3467778888888888888888888888876543 22455677777777 888888888877766654 334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
.+..+++.+...|.+.|++++|...|+++.. .+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d~ 391 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KNL 391 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CCe
Confidence 4567778888888888888888888876543 245
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGD 556 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 556 (1043)
.+|..+...|...|+.++|+.+|+++... .|+ ..++..+...+...|..++|..+|+.+....+- +...+..+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 67888888888888888898888888763 344 567778888888889999999999888765432 3456788888
Q ss_pred HhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHh
Q 001618 557 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 636 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~l 636 (1043)
++.+.|++++|.+.++++ ...++...|..|... +... |+++.|...+++++...|.++..+..+
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 899999999999888764 233466777777777 7777 889999999999999999988888899
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHh
Q 001618 637 GVVLAEKGQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 637 a~~~~~~g~~~~A~~~~~~~~~~~ 660 (1043)
+.+|...|++++|..+++.+.+..
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988764
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-22 Score=213.53 Aligned_cols=464 Identities=14% Similarity=0.127 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 284 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 284 (1043)
|.-|+-.-.++..+. .+|.-.+.++.+++..|+|..|..+...-. ....+....+..+.++....++++|+.++.
T Consensus 32 y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~----le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYK----LEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666665555 566666667777777777776666554432 223444556666677777777777766665
Q ss_pred HHHHhc---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 285 ASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 285 ~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..-... ...+.. . +......+.. ...+ -...+.+..|.+|....++++|...|.+++.
T Consensus 107 ~~~~~~~~f~yy~~~-----~-~~~l~~n~~~-----------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKD-----A-ANTLELNSAG-----------EDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred ccchhhcchhhcchh-----h-hceeccCccc-----------ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 331100 000000 0 0000000000 0000 0122344455555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHH-hcC----------CH----HHHHHHHHHHHHHH-------------H---hcCCCCcHHHHHH
Q 001618 360 IDPRDAQAFIDLGELL-ISS----------DT----GAALDAFKTARTLL-------------K---KAGEEVPIEVLNN 408 (1043)
Q Consensus 360 ~~p~~~~~~~~la~~~-~~~----------~~----~~A~~~~~~a~~~~-------------~---~~~~~~~~~~~~~ 408 (1043)
.++.+..+...+.... ... ++ .+-.+.++....+. + -.+...+..++..
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 5554444333332211 000 00 00000011011100 0 0011224677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH
Q 001618 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488 (1043)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 488 (1043)
.+..++..++|.+...++...+.. .++.....-..+|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~------------------------------------------dpfh~~~~~~~ia- 286 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK------------------------------------------DPFHLPCLPLHIA- 286 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh------------------------------------------CCCCcchHHHHHH-
Confidence 888899999999999999998874 2233334445556
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHH
Q 001618 489 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 568 (1043)
++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...|..++|+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHH
Confidence 88888998888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~ 648 (1043)
..|..+.+..++... ..+.+|.- |... ++++-|..+|.+++.+.|.++...+-+|.+....+.|.+
T Consensus 367 aaY~tAarl~~G~hl-P~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 367 AAYFTAARLMPGCHL-PSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHHHHHHHhccCCcc-hHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHH
Confidence 999999998776332 23335555 7777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHH
Q 001618 649 SKDLFTQVQEAASGSVF--VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726 (1043)
Q Consensus 649 A~~~~~~~~~~~p~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~ 726 (1043)
|..+|+.++...+.... +.....+.||||+|.+++++.+||..|++++.. .+.++.++..+|.+|...|+++.|+.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 99999999955432110 124456899999999999999999999999999 67789999999999999999999999
Q ss_pred HHHHHHHhCCCCcchhhHHHHHH
Q 001618 727 SLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 727 ~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
.|.+++-+.|+|..+.--|+.++
T Consensus 511 ~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 511 HFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999988766666654
No 36
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.93 E-value=9.7e-22 Score=220.22 Aligned_cols=603 Identities=13% Similarity=0.051 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
++.+..|..+|+.++..+|.+ ....|.+......|..|...+..+.... .|-..+..+..++.+.+.-.-=...|.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 345556666666666666655 4556666666677777777776666554 333334444444333110000000000
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
... ...|..++. ....+...|...|-+++.++|....++..||.+|....+ ...|..+|.++++++|.
T Consensus 457 ~~e-------~~~~w~a~~--~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat 524 (1238)
T KOG1127|consen 457 ECE-------NSEFWVALG--CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT 524 (1238)
T ss_pred HHH-------HHHHHHHHH--HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch
Confidence 000 001111111 122346667777777777777777777777777777665 66777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHH
Q 001618 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 301 (1043)
+..++-.++..|....+++.|..+.-.+-+.... ......|..+|..|...+++..|+..|+.+++ .+|....+|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~ 600 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWL 600 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHH
Confidence 7777777777777777777776663333221110 11223455567777777777777777777776 5666667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQAFIDLGEL 374 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~ 374 (1043)
.+|.+|...|.+..|++.|.++..++|.+.-..+..+.+....|.|.+|+..+..++...... ...++.++..
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777666543222 2333333333
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHhcCC---C--------------------------------------------------
Q 001618 375 L-ISSDTGAALDAFKTARTLLKKAGE---E-------------------------------------------------- 400 (1043)
Q Consensus 375 ~-~~~~~~~A~~~~~~a~~~~~~~~~---~-------------------------------------------------- 400 (1043)
+ ..|-...|..++++.+..+...-. .
T Consensus 681 ~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~L 760 (1238)
T KOG1127|consen 681 SAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFL 760 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHH
Confidence 3 344444444444444433221100 0
Q ss_pred ------------CcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 401 ------------VPIEVLNNIGVIHFE--------KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 401 ------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
..+..|+++|..|++ +.+...|+.++.+++.
T Consensus 761 g~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~----------------------------- 811 (1238)
T KOG1127|consen 761 GYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS----------------------------- 811 (1238)
T ss_pred HHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-----------------------------
Confidence 001122222222221 0011122233333222
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
...++...|..||.+ ...|++.-|..+|-+.+...|....+|+++|.++..+.+++-|...|..+
T Consensus 812 --------------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 812 --------------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred --------------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 223445555556555 44466666666666666666666666666666666666666666666666
Q ss_pred HHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH-HhhcccChhH---HhhhHHHHH
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA-LRNEKRAPKL---EATHLEKAK 616 (1043)
Q Consensus 541 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~-~~~~~~~~~~---~~~~~~~A~ 616 (1043)
..++|.+...|...+.+....|+.-++...|...-..........-+.+. ++.. .+...++.+. ..+....|-
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw---~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW---LCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH---HHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 66666666666666666666666666666665532222111111111100 0000 0000000000 124444455
Q ss_pred HHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHhHHHHHHHccCHHHHHHHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 695 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 695 (1043)
-.+.+.+..+|+...++...|..+.+.+.+..|.+...+.+......- ....+.+--+.|.+++..|.|+.|...+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 566777788999999999999999999999999999888776532100 0022224445666666666666554432111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 696 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 696 l~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
- ...+ +-........+-.|++.++.+.|++++.+.-
T Consensus 1034 ~----~evd-Edi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1034 W----MEVD-EDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred c----hhHH-HHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 0 0111 1111112222445556666666666655544
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-22 Score=212.33 Aligned_cols=447 Identities=17% Similarity=0.162 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
..+|.-|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .....+..+.+..+.++.....++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346888999999988776 78888899999999999999998887665 5556678899999999999999999999988
Q ss_pred HH------HHhCCCC------------------hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 142 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 142 ~~------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.+++..|-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111111 12345667888999999999999999999999999888777665444
Q ss_pred HhhhH-----H------hHHHHHHHHHHHHHh-------------C--------CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001618 198 QANEA-----A------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 245 (1043)
Q Consensus 198 ~~~~~-----~------~~~~A~~~~~~al~~-------------~--------p~~~~~~~~la~~~~~~g~~~~A~~~ 245 (1043)
..... . ...+=.+.++..+++ + ..++.++...+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 33210 0 011111111111111 1 24677888889999999999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 246 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 325 (1043)
Q Consensus 246 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 325 (1043)
++..+... |-....+....-++...|+..+-..+-.+.+. ..|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999664 44444444434488888887776666666666 7788888999999999999999999999999999
Q ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHH
Q 001618 326 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 404 (1043)
Q Consensus 326 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 404 (1043)
++|....+|...|..+.-.|..++|+..|..+.++-|......+.+|.-| ..+++.-|..+|.+++.+.|. ++-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999888888899989 899999999999999999876 588
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHH
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 484 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1043)
++..+|.+.+..+.|.+|..+|+.++..-+ + .....+.-.+++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~----------------------------------~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--S----------------------------------VLNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--h----------------------------------ccccccchhHHHH
Confidence 999999999999999999999999984210 0 0001113456899
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 001618 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 557 (1043)
+||.++.+++.+.+|+..|++++...|.++.++..+|.++..+|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777766644
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-21 Score=197.55 Aligned_cols=425 Identities=16% Similarity=0.082 Sum_probs=333.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-------------------HHHHHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-------------------DSLEFYKRALQ 145 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~-------------------~Al~~~~~~l~ 145 (1043)
..+.+|..|+....++.|.-.++.... ....+..-.+.+..|.-+ ..+..+.+-+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le 154 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLE 154 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHH
Confidence 346689999999999999888877653 222222222322222211 11222222222
Q ss_pred h---CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--
Q 001618 146 V---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-- 220 (1043)
Q Consensus 146 ~---~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-- 220 (1043)
. .-+..+..++..|.++...|....|+..|..++...|-+..+|..|+.+..... ........-|
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~ 224 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSD 224 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCccc
Confidence 1 222236678889999999999999999999999999999999999998754432 2222222233
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
.+...-..+..++....+.++++.-.+.....+ .|.....-...|.+.+.+.++++|+..|+.+.+ ++|....-.
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dm 299 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDM 299 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhH
Confidence 344555666777777778888777777766542 356667777889999999999999999999998 566666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001618 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 379 (1043)
Q Consensus 301 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 379 (1043)
-.+..+++-.++-.+-.-+...+..++.--++....+|.-|.-.++.++|+.+|+++++++|....+|..+|.-| ...+
T Consensus 300 dlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 300 DLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 667777777766666556666777788778889999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhh
Q 001618 380 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 459 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1043)
...|+..|+.++.+.|. +..+|+.+|..|.-++...=|+-+|++++.
T Consensus 380 t~AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------------------- 426 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------------------- 426 (559)
T ss_pred cHHHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh----------------------------
Confidence 99999999999998776 578999999999999999999999999988
Q ss_pred hhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001618 460 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539 (1043)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (1043)
..|.+..+|..||.+|.+.++.++|+++|..++........+++.+|.++...++..+|..+|.+
T Consensus 427 ---------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 427 ---------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred ---------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56889999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHH-------cCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 540 ALKV-------NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 540 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
.+.. .|....+...|+..+.+.+++++|..+...++.-
T Consensus 492 ~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 492 YVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9884 4555668888999999999999998887776554
No 39
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-20 Score=201.43 Aligned_cols=525 Identities=14% Similarity=0.108 Sum_probs=380.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
.++..+.-.+..++|...+++++.+++. .|..++++...|..+...|+-++|..+...++. +++....+|+.+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHH
Confidence 4444455566788999999999999974 477789999999999999999999999999997 7788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 383 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 383 (1043)
.++....+|++|+.+|..++.+.|+|..++..++.+..++++++.....-.+.++..|.....|+.++..+ ..|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 384 LDAFKTARTLLKKAGEEV---PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
...++............. ..+.......++...|.+++|++.+..--..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------- 214 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------- 214 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----------------------------
Confidence 999888777653211111 1355556677888899989888887654321
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHH-HHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNE 539 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~ 539 (1043)
.-+........+.++..++++++|..+|..++..+|++...+..+-.++..-.+.-+++ ..|..
T Consensus 215 ---------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 215 ---------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred ---------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11234455567889999999999999999999999999998888888776333344444 55555
Q ss_pred HHHHcCCChHHHHHHHHHhhhccchH-HHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHH
Q 001618 540 ALKVNGKYPNALSMLGDLELKNDDWV-KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 618 (1043)
Q Consensus 540 al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 618 (1043)
.-+..|........--.+... .++. ..-.++...++.+-.+-... +-.+ |-.. + ...-.++=+..
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~vf~d---l~SL-yk~p--------~-k~~~le~Lvt~ 345 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPSVFKD---LRSL-YKDP--------E-KVAFLEKLVTS 345 (700)
T ss_pred HhhcCcccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCchhhh---hHHH-Hhch--------h-HhHHHHHHHHH
Confidence 555555544333222222222 2222 23334444444422111111 1111 1110 0 00111222222
Q ss_pred HHHHHcc-------------Ccc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccC
Q 001618 619 YTRVIVQ-------------HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 684 (1043)
Q Consensus 619 ~~~~l~~-------------~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~ 684 (1043)
|...+.- .|. -.|.++.++.-+-..|+++.|..++..++...| ..++.|..-|.++...|.
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-----TliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-----TLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHHhcCC
Confidence 2222221 222 356677888889999999999999999999988 778899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH--HhhhcCC
Q 001618 685 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS--TLQKTRR 762 (1043)
Q Consensus 685 ~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~--~l~~~~~ 762 (1043)
+++|..++..+... +.+|..+-...|.-..++++.++|.+++.+--... .+..-..+-..|++++.+. .+.+
T Consensus 421 l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~-~~~~~~L~~mqcmWf~~E~g~ay~r--- 494 (700)
T KOG1156|consen 421 LDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG-FGAVNNLAEMQCMWFQLEDGEAYLR--- 494 (700)
T ss_pred hHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc-cchhhhHHHhhhHHHhHhhhHHHHH---
Confidence 99999999999887 66676676688999999999999999887664432 3444444555666666552 2222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001618 763 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK--KINTHVEYC--KHLLDAAKIHREAAEREE 825 (1043)
Q Consensus 763 ~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~~~~~~~~~e 825 (1043)
+..+-.|++......++|..|+..... +|.++.. .....+.+. .+.|......+++++.+.
T Consensus 495 -~~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai 559 (700)
T KOG1156|consen 495 -QNKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAI 559 (700)
T ss_pred -HHHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 235677889999999999999998765 6777776 344555555 566666666666666544
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.9e-22 Score=219.41 Aligned_cols=314 Identities=20% Similarity=0.240 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001618 34 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 113 (1043)
Q Consensus 34 ~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 113 (1043)
....+.++-.+|..|..+..+ +..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-...
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677777788888777544 35689999999766677777788889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
|-.+...-....++....+--+---+.+.++..+|.. +..|..+|.||..+++++.|+.+|+++++++|+...++..+|
T Consensus 384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlG 462 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLG 462 (638)
T ss_pred cccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcC
Confidence 9766555555566666655554445567778888998 778999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc
Q 001618 194 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273 (1043)
Q Consensus 194 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 273 (1043)
.=+....+ ++.|+.+|++++..+|.+..+|+-+|.+|.++++++.|+-.|.+++. .+|.+......+|.++...
T Consensus 463 hE~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 463 HESIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQL 536 (638)
T ss_pred ChhhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHh
Confidence 88888877 99999999999999999999999999999999999999999999984 4578888888899999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
|+.++|+.+|++|+. .+|.++.+.+..|.+++..+++++|+..++.+-.+.|+...+++.+|.+|.+.|+.+.|+..
T Consensus 537 k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999987 67788888899999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 001618 354 LRKAAKIDPRDAQ 366 (1043)
Q Consensus 354 ~~~~l~~~p~~~~ 366 (1043)
|.-+..++|.-..
T Consensus 614 f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 614 FSWALDLDPKGAQ 626 (638)
T ss_pred hHHHhcCCCccch
Confidence 9988888887554
No 41
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=6.9e-19 Score=190.28 Aligned_cols=450 Identities=15% Similarity=0.151 Sum_probs=334.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
....++..+.-.+..++|...++..+.+++..|.++..+...|..+...|+-++|..+...++..++.+ ..+|..+|.+
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~ 84 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHH
Confidence 345677788888889999999999999999999999999999999999999999999999999999888 6789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+....+|++|+.+|..|+.++|+|...|.-|+.+..+.++ ++-....-.+.+++.|.....|..++..++..|++..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 8888888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 242 VEQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
|..+.+...+.....+. ...+......++...|.+++|++.+..--. ..-+........+.++.+.+++++|
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999888876543332 244566667778888998888888766543 2223334456678899999999999
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
+..|...+..+|++...+..+-.++.+..+--+++ ..|...-+..|.. .+...++... ...++.. .+.+.+...
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~---~vdkyL~~~ 314 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKE---IVDKYLRPL 314 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHH---HHHHHHHHH
Confidence 99999999999999988888877776333334444 5555544444433 2222233322 2222222 222222221
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC---
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN--- 471 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 471 (1043)
-..|. +.+...+-.+|-.-. .. .++++.+. ++.+.+...+.
T Consensus 315 l~Kg~---p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 315 LSKGV---PSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNF 358 (700)
T ss_pred hhcCC---CchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCc
Confidence 11111 222233322222111 11 12332221 11111111110
Q ss_pred ----CCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC
Q 001618 472 ----HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 547 (1043)
Q Consensus 472 ----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (1043)
..+.+......++.++..+...|+++.|..+...++...|..++.|...|.++...|++++|..++..+.+++-.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 0123334556777889999999999999999999999999999999999999999999999999999999999877
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
..+-...+...++.++.++|.++..+.-...
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 7777788888899999999999988776654
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-20 Score=189.93 Aligned_cols=376 Identities=16% Similarity=0.182 Sum_probs=317.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIG 159 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg 159 (1043)
.++..++..|.++-..|....|+..|..++...|-+-.+|..++.+... +.........-|. .....-+.++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 4677888899999999999999999999999999999999998876543 3333333433453 2233345678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 160 LCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
.++..+...++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|....-.-...++++-..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 8888888999999999998888 78888888888888888888 9999999999999999888777777887777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
-.+..-+...+... +.-.+++...+|..|...++.++|+.+|+++++ .+|....+|..+|.-|..+.+...|+.
T Consensus 312 ~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 66655555555543 345668899999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 397 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~ 397 (1043)
.|+++++++|.+..+|+.||+.|.-++-..=|+-+|++++...|+++..|..||.+| ..++.++|+++|..++.....
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999876332
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCC
Q 001618 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477 (1043)
Q Consensus 398 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1043)
...++..+|.+|-+.++..+|..+|.+.+.... + .....+
T Consensus 465 ----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~----~--------------------------------eg~~~~ 504 (559)
T KOG1155|consen 465 ----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE----L--------------------------------EGEIDD 504 (559)
T ss_pred ----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----h--------------------------------hcccch
Confidence 468899999999999999999999999887310 0 001345
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
....+...|+..+.+.+++++|..+...++.-.+..
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 566777779999999999999998888877654443
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-18 Score=189.48 Aligned_cols=413 Identities=20% Similarity=0.182 Sum_probs=308.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC
Q 001618 269 SYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346 (1043)
Q Consensus 269 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 346 (1043)
++.-..+.++++-.....+.... ........+-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 34444455555544433332111 1223455677788889999999999999999998877888999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-----
Q 001618 347 IEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG----- 417 (1043)
Q Consensus 347 ~~~A~~~~~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g----- 417 (1043)
-..|+.+++..+... |.++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 999999999999888 88888888888877 889999999999999997654445556778888888775332
Q ss_pred ------CHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH
Q 001618 418 ------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 491 (1043)
Q Consensus 418 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 491 (1043)
...++++.++++++ .+|.++.+.+.++.-|.
T Consensus 453 ~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQYA 489 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHHHH
Confidence 14456666666665 56788899999999999
Q ss_pred hcCChHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHH
Q 001618 492 QIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 570 (1043)
.+++...|....++++..++ +.+.+|..++.++...+++..|+.+...++...|.|.........+-...++.++|...
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 99999999999999999955 56899999999999999999999999999999998766555555555555555555555
Q ss_pred HHHhhhcCC--------------------------------------------------------------CCCh-----
Q 001618 571 FRAASDATD--------------------------------------------------------------GKDS----- 583 (1043)
Q Consensus 571 ~~~~l~~~~--------------------------------------------------------------~~~~----- 583 (1043)
....+..-. .++.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 443332111 0000
Q ss_pred -HHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC
Q 001618 584 -YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662 (1043)
Q Consensus 584 -~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 662 (1043)
..|...+.. |.. .++.+.|..++.++-..+|..++.++..|.++...|.+.+|...|..++..+|
T Consensus 650 ~~lwllaa~~-~~~------------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP- 715 (799)
T KOG4162|consen 650 QKLWLLAADL-FLL------------SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP- 715 (799)
T ss_pred HHHHHHHHHH-HHh------------cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-
Confidence 001111111 111 26677777778888888888888888888888888888888888888888877
Q ss_pred CCCCCchhHHHhHHHHHHHccCHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 663 SVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 663 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+.+.....+|.++...|+..-|.. ++..+++. ++.++++|++||.++.+.|+.+.|..+|.-++++.+.+|.
T Consensus 716 ----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 ----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 667777788888888887777776 77888877 6667788888888888888888888888888888888777
Q ss_pred hhhH
Q 001618 741 LRFD 744 (1043)
Q Consensus 741 ~~~n 744 (1043)
..|.
T Consensus 790 ~pFs 793 (799)
T KOG4162|consen 790 LPFS 793 (799)
T ss_pred cccc
Confidence 6553
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.4e-21 Score=202.03 Aligned_cols=450 Identities=17% Similarity=0.164 Sum_probs=258.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCC
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~ 167 (1043)
..|...+..|+|+.|+.+|..++.++|.|...+.....+|...|+|.+|+..-.+.++++|+. +..|..+|..+.-+|+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhccc
Confidence 345566666666666666666666666666666666666666666666666666666666666 4456666666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH------------------HhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEA------------------AGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 168 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~------------------~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
|++|+..|.+.|+.+|+|...+..|+.++...... .++-..-..|...+...|.++..+...
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 66666666666666666666666665555211000 001111112222222222222111100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh----------c-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChh
Q 001618 230 ANHFFFTGQHFLVEQLTETALAV----------T-NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 298 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~----------~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 298 (1043)
. . .....+........ . ...+..+. ...-...-..++..+-...- ....
T Consensus 166 l----~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~d~~ee~~~k-----------~~a~ 225 (539)
T KOG0548|consen 166 L----N---DPRLMKADGQLKGVDELLFYASGIEILASMAEPC--KQEHNGFPIIEDNTEERRVK-----------EKAH 225 (539)
T ss_pred c----c---cHHHHHHHHHHhcCccccccccccccCCCCCCcc--cccCCCCCccchhHHHHHHH-----------Hhhh
Confidence 0 0 00000000000000 0 00000000 00000000000000000000 0112
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 378 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 378 (1043)
..-.+|...++..++..|++.|..++.++ .+...+.+.+.+|+..|.+...+.....+++.......-+..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI------- 297 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI------- 297 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH-------
Confidence 24556677777777777777777777777 6666777777777777777776666666444322111111110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
...+..+|..|...++++.|+.+|++++....
T Consensus 298 ------------------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------ 329 (539)
T KOG0548|consen 298 ------------------------AKALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------ 329 (539)
T ss_pred ------------------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc------------------------
Confidence 22333367778888999999999998876210
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 538 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (1043)
. ..+.......++++.......-.+|.-...-..-|..++..|+|..|+..|.
T Consensus 330 --------------------t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 330 --------------------T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred --------------------C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 1 3334445556677777776666777766666667888888888888888888
Q ss_pred HHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHH
Q 001618 539 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 618 (1043)
Q Consensus 539 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 618 (1043)
+++..+|+++.++.+.+.+|.++|.+..|+...+.++++.|+ ..-+++.-|.+ ++.+ .+|++|++.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAlea 448 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEA 448 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHH
Confidence 888888888888888888888888888888888888888665 56667777777 7777 888999999
Q ss_pred HHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHH
Q 001618 619 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655 (1043)
Q Consensus 619 ~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~ 655 (1043)
|.++++.+|++..+..++..+...+.......++.++
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999988888888887777765333344444444
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-19 Score=183.67 Aligned_cols=470 Identities=16% Similarity=0.200 Sum_probs=386.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
...|+..++.+.-+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++.+....|..++++++.+-|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 44566666777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
.. ...|+....+--.+|+...|.++|++.+...|+ ..+|......-++.++ .+.|...|++.+-.+|. +..|..
T Consensus 139 RV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wik 212 (677)
T KOG1915|consen 139 RV-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIK 212 (677)
T ss_pred hH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHH
Confidence 98 677888888889999999999999999999984 6788888888888877 99999999999888864 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 308 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 308 (1043)
.+..-...|+...+..+|+.++.....+......+...|..-..+..++.|..+|.-++..++.+.. ...+-.+...--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHH
Confidence 8999999999999999999999876665555566777777788889999999999999986543211 222333333333
Q ss_pred HcCCH---HHHH-----HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHH
Q 001618 309 KLGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---------AQAFIDL 371 (1043)
Q Consensus 309 ~~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l 371 (1043)
+-|+. +.++ -.|+..+..+|.|.++|+....+-...|+.+.-.+.|++++...|.. ..+|++.
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 44543 3443 25777888999999999999999999999999999999999876653 3455555
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhh
Q 001618 372 GELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 449 (1043)
Q Consensus 372 a~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (1043)
+..- ...+.+.+...|+.++.+.|... -.-..++...+....++.+...|...+-.++..||
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkk-FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP--------------- 435 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKK-FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP--------------- 435 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC---------------
Confidence 5544 67899999999999999887632 22367888889999999999999999999999876
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Q 001618 450 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 529 (1043)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 529 (1043)
...+.-....+-.++++++....+|++.+.-.|.+-.+|...|.+-..+|+
T Consensus 436 -----------------------------K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 436 -----------------------------KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred -----------------------------chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 233444445566778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCh--HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001618 530 LQLSIELVNEALKVNGKYP--NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 592 (1043)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 592 (1043)
.+.|..+|.-+++...-+. .+|-.+..+-...|.++.|..+|++++...+. ..+|++.+..
T Consensus 487 tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~f 549 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHH
Confidence 9999999999988764433 36677788888899999999999999998664 3356555533
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.5e-20 Score=211.53 Aligned_cols=301 Identities=20% Similarity=0.123 Sum_probs=247.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIG 159 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg 159 (1043)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999999999999999999999999999999999999999998754332 124678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFF 234 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 234 (1043)
.++...|+++.|..+|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 9999999999999887653 24556788888
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHcCCH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 313 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~~ 313 (1043)
..|++++|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 8888888888888888653 455678888888888888888888888888863 3332 34567788888888888
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Q 001618 314 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTA 390 (1043)
Q Consensus 314 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a 390 (1043)
++|+..+++++...|+... +..++.++...|++++|+..|.+++...|++......+...+ . .|+..+++..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 8888888888888887644 477888888888888888888888888888776554454444 2 45777888877777
Q ss_pred HHH
Q 001618 391 RTL 393 (1043)
Q Consensus 391 ~~~ 393 (1043)
++.
T Consensus 345 ~~~ 347 (389)
T PRK11788 345 VGE 347 (389)
T ss_pred HHH
Confidence 653
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=6.1e-20 Score=182.72 Aligned_cols=346 Identities=18% Similarity=0.191 Sum_probs=277.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHh
Q 001618 78 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 157 (1043)
Q Consensus 78 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~ 157 (1043)
.+|.++.-.+.+|..++..|++..|+..|..++..+|++..+++..|.+|..+|+-..|+..+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3566777889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
.|.+++++|.++.|..-|..++..+|++... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2211111000
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 314 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 314 (1043)
..+......++..|++..|+.++..++. ..|..+..+...+.+|+..|++.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1122223345566788888888888876 56777777888899999999999
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001618 315 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 315 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 394 (1043)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+++++++|+.-..+- .|.++.++.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----------------~YKklkKv~ 270 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----------------FYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755443 222222221
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCC
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1043)
.. ..-+......+.|.+++...++.++..|.
T Consensus 271 K~----------les~e~~ie~~~~t~cle~ge~vlk~ep~--------------------------------------- 301 (504)
T KOG0624|consen 271 KS----------LESAEQAIEEKHWTECLEAGEKVLKNEPE--------------------------------------- 301 (504)
T ss_pred HH----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------
Confidence 11 01123345667888888888888874320
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
..+........+..|+..-+++.+|+..+..++..+|+++.++...+..|+....|+.|+..|+++...++++..+.-.+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 11223334445677888999999999999999999999999999999999999999999999999999999988765443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-21 Score=212.00 Aligned_cols=290 Identities=20% Similarity=0.237 Sum_probs=178.6
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK 211 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~ 211 (1043)
+..+|+..|.+.-...++. ..++..+|..|+.+++|++|..+|+.+-.+.|-.+...-.+..++....+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt-~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNT-GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 3445555555533334444 35555555555555555555555555555555444333333333333322 1111112
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001618 212 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291 (1043)
Q Consensus 212 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 291 (1043)
.+..+..+|..|..|..+|.+|..+++++.|++.|+++++. +|....+|..+|.-+.....|+.|..+|+.++.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 23344555666666666666666666666666666666643 345556666666666667777777777777665
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001618 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371 (1043)
Q Consensus 292 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 371 (1043)
.+|....+|+++|.+|.++++++.|.-.|++++.++|.+..++..+|.++.+.|+.++|+.+|++++.++|.++-..+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhh
Q 001618 372 GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 436 (1043)
Q Consensus 372 a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (1043)
+.++ ..+++.+|+..++++..+.|+ ...+++.+|.+|.+.|+.+.|+..|.-|..+.|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7766 677777777777766666555 35666677777777777777777777776665543
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.4e-20 Score=214.92 Aligned_cols=272 Identities=19% Similarity=0.176 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 378 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 378 (1043)
..+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+++.++...+....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------ 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------
Confidence 34455666666677777777777777766666666666777777777777777666666553221110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
....++..+|.++...|+++.|+.+|.+++.
T Consensus 105 ----------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--------------------------- 135 (389)
T PRK11788 105 ----------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD--------------------------- 135 (389)
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc---------------------------
Confidence 0012344445555555555555555555543
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcH-----HHHHHHHHHHHHcCChhHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLS 533 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A 533 (1043)
..|....++..++.++...|++++|+..+..++...|... ..+..++.++...|++++|
T Consensus 136 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 136 ----------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 1233444455555555555555555555555555444321 1233444445555555555
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHH
Q 001618 534 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 613 (1043)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 613 (1043)
+.+|++++..+|.+..++..+|.++...|++++|+..|++++...|......+..++.+ |... |+++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~ 266 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEA 266 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHH
Confidence 55555555555555555555555555555555555555554444332222233333333 4333 4444
Q ss_pred HHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhc
Q 001618 614 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 614 ~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
+|+..+++++..+|+...+ ..++.++...|++++|+.+|++++...|
T Consensus 267 ~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 4444444444444433222 3444444444444444444444444443
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-18 Score=189.73 Aligned_cols=436 Identities=17% Similarity=0.132 Sum_probs=337.5
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHh
Q 001618 80 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLG 157 (1043)
Q Consensus 80 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~ 157 (1043)
.+++.+|-.+...+...|+|..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35777888888999999999999999999998887788999999999999999999999999999988 7776677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
-..|+...+.+++++.+..+++.... -.+.++..+|.+|...-. .....++++.++++++.+|+|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 77888899999999999999998431 134567777777755422 12257889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
+.++++.-|...++...|......++.... ...+.+|..++.++...+++..|+.+...++... +.+........
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~ 554 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKI 554 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhh
Confidence 999999999999999999999999997632 3556889999999999999999999999998854 34444455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
.+-...++.++|+..+...+........+-..++ .+....++..+|+..+.++. ...
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls--------------~l~ 620 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS--------------SLV 620 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH--------------HHH
Confidence 6666788999999988888776543333333332 11111112222222222211 111
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc---CCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKA---GEEV-----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 447 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~---~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 447 (1043)
. .+...+. +.. . .|.. ..+. ...+|...+..+...++.++|..++.++..
T Consensus 621 a-~~~~~~~--se~--~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------------- 678 (799)
T KOG4162|consen 621 A-SQLKSAG--SEL--K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------------- 678 (799)
T ss_pred H-hhhhhcc--ccc--c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----------------
Confidence 0 0000000 000 0 1110 0000 135667788889999999999999999887
Q ss_pred hhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Q 001618 448 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 527 (1043)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 527 (1043)
+.|..+.+++..|.++...|+..+|...|..++.++|+++.+...+|.++...
T Consensus 679 ---------------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 679 ---------------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred ---------------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHH--HHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 528 NNLQLSIE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 528 g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
|+..-|.. ++..+++++|.++++|+.+|.++.+.|+...|..+|.-++++.++...
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99888888 999999999999999999999999999999999999999998766443
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=2.3e-19 Score=178.60 Aligned_cols=304 Identities=16% Similarity=0.122 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
++|..|+..|-.++..+|++..+++.+|.+|+..|+-.-|+.-|.+++.+.|+...+.+..|.+++++|.++.|...|..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 46669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChh--------------HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHH
Q 001618 143 ALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 208 (1043)
Q Consensus 143 ~l~~~p~~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A 208 (1043)
++..+|++.. .........++..|+...|+......|++.|-+...+...+.+|...|+ ...|
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e---~k~A 208 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE---PKKA 208 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc---HHHH
Confidence 9999996511 1123344556677999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHH---------HHHHHHcCCHHHH
Q 001618 209 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL---------ARSYHSKGDYEKA 279 (1043)
Q Consensus 209 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A 279 (1043)
+..+..+-++..++...++.++.+++..|+.+.++......++..+........|-.+ +......++|.++
T Consensus 209 I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 209 IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999997654433222222222 3345667888999
Q ss_pred HHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+...++.++ ..|.. ...+-.+..|+...+++.+|+..+..++.++|+++.++...+.+|+-...|+.|+..|+
T Consensus 289 le~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 289 LEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999988887 44442 33345577888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 001618 356 KAAKIDPRDAQAFIDLG 372 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la 372 (1043)
++.+.++++..+.-.+-
T Consensus 366 ~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 366 KALELNESNTRAREGLE 382 (504)
T ss_pred HHHhcCcccHHHHHHHH
Confidence 99999998877665443
No 52
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-18 Score=184.25 Aligned_cols=437 Identities=17% Similarity=0.139 Sum_probs=297.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..|...+..|+|+.|+.+|..++. .+|.+...+.+...+|...|+|++|+.--.+..++.|+-+..|..+|..+.-+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~---l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIM---LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHc---cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 456667777888888888887776 45556666777777888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCHHHHH
Q 001618 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE-KGEFESAH 423 (1043)
Q Consensus 345 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 423 (1043)
|+|++|+..|.+.++.+|++..+...++.++ .-+.. +...|. .+.++..+...-.. .-..+.+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~-~~~~~~-------------~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYA-ADQLFT-------------KPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHH-hhhhcc-------------CcHHHHHhhcChhhhhhhccHHH
Confidence 8888888888888888888877777777766 10100 011110 01111111110000 00011111
Q ss_pred HHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC---------------CCCCCCC------chhHH
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---------------NHVELPW------NKVTV 482 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~------~~~~~ 482 (1043)
......+..+|.+-.+... ...+-...+.+.......+....... ..+.... ....-
T Consensus 149 ~~~l~~~~~~p~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHhhcCcHhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 1111111111100000000 00000000000000000000000000 0000000 12234
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh-------HHHHHHH
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLG 555 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~ 555 (1043)
...+|.......++..|++.|..++.++ .....+...+.+++..|.+..++.....+++..-... .+...+|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999 8888899999999999999999988888777654322 2344467
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
..|.+.++++.|+.+|.+++..+..++. .... +..++++.......-.+|.-......
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~----------ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~ 363 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL----------LSKL------------KEAEKALKEAERKAYINPEKAEEERE 363 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH----------HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHH
Confidence 7888889999999999998876543222 2222 67788888888888888887666677
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
-|..+...|+|..|+..|.+++...| +++..|.|.|.||..+|.+..|+.-.+.+++. +++....+..-|.++
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 79999999999999999999999998 88999999999999999999999999999999 677799999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~ 751 (1043)
+...+|+.|.+.|.++++.+|++..+.-.+.-|++.
T Consensus 437 ~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999998887777777643
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5e-18 Score=173.39 Aligned_cols=435 Identities=17% Similarity=0.105 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHHHHHhhc--------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 60 EKEEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 119 (1043)
..+..|..|.+.|..++++ .|.+.......+.+|...++-+.|+..+..+.... ..+..
T Consensus 54 ~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~i 132 (564)
T KOG1174|consen 54 YKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRI 132 (564)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhH
Confidence 4456677788888777644 23455667778999999999999999887765433 24666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---HHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMD 196 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~la~~~ 196 (1043)
.+.++..+-..++-.++.--|..++...|-.... ..+..-....-++.+-.. -.++...|.....| ..++.++
T Consensus 133 nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~---i~~ll~l~v~g~e~~S~~-m~~~~~~~~~dwls~wika~Aq~~ 208 (564)
T KOG1174|consen 133 NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV---IEALLELGVNGNEINSLV-MHAATVPDHFDWLSKWIKALAQMF 208 (564)
T ss_pred HHHHHHHHhccccccHHHHhhhHHHHhcchHHHH---HHHHHHHhhcchhhhhhh-hhheecCCCccHHHHHHHHHHHHH
Confidence 6777777777777667777777777766544111 111111111112222111 12233444433332 2233333
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 197 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 197 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
...+. +.-+..++-......|+|...+..+|.+++..|++.+|+-.|+++... +|....+.-..|..+...|++
T Consensus 209 ~~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 209 NFKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred hcccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCH
Confidence 33332 555666667777788999999999999999999999999999998854 467777788888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
++--.+....+. ........|+.-+..++..+++..|+.+.++++..+|.+..++...|.++...|+.++|+-.|+.
T Consensus 283 e~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 283 EQDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hhHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 988777777665 34455666888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHcch
Q 001618 357 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la-~~-~~~~g~~~~A~~~~~~al~~~ 433 (1043)
+..+.|.....|..|..+| ..+.+.+|......+++.++. +...+..+| .+ ...----++|..++++++.
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-- 432 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-- 432 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhc--
Confidence 9999999999999999999 999999999988888888776 356666665 33 3334456788888888887
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
+.|....+...+|.++...|.+..++.++++.+...|+
T Consensus 433 -----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D- 470 (564)
T KOG1174|consen 433 -----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD- 470 (564)
T ss_pred -----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-
Confidence 56788888899999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 001618 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 557 (1043)
...+..||.++...+.+++|+..|..++.++|.+..+...+-.+
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 46788899999999999999999999999999987766555443
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.3e-16 Score=162.81 Aligned_cols=467 Identities=17% Similarity=0.148 Sum_probs=361.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 182 (1043)
.+.|+..+..+.-+...|...|.--..++++..|..+|+++|..+..+ ..+|+..+.+-++......|..+|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 455666677777778899999999999999999999999999999887 6779999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001618 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 262 (1043)
Q Consensus 183 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 262 (1043)
|.-...|+....+--..|+ ..-|.++|.+.+...|+ ..+|......-.+.+..+.|..+|++.+-.. .....
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~ 209 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSN 209 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHH
Confidence 9988889888888888888 99999999999999885 4588888888889999999999999988543 34577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHH
Q 001618 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN--CETLKALGHI 340 (1043)
Q Consensus 263 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~ 340 (1043)
|...+..-...|+..-|..+|..++..+++.......+...|..-..+..++.|.-+|.-++..-|.+ ..++..+...
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 88899999999999999999999998776655555556666677777889999999999999988887 3444444444
Q ss_pred HHHcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc----HHHHH
Q 001618 341 YVQLGQI---EKAQ-----ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP----IEVLN 407 (1043)
Q Consensus 341 ~~~~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~ 407 (1043)
--+-|+. +.++ --|++.+..+|.+.++|+.+..+. ..|+.+.-...|++++...|....... ..++.
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 4455653 3333 346777888999999999999999 889999999999999876554222111 12222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 408 NIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 408 ~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
+.+. .-+...+.+.+.+.|+.++++-|. ..-....+|...
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiWlmy 410 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHHHHH
Confidence 2222 124567888888888888874220 112356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHH
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 566 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (1043)
|.....+.+...|.+++-.++..+|.+ ..+-....+-.++++++.+..+|++.+..+|.+..+|..+|.+-..+|+++.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 888888889999999999999888874 4445555667778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccH
Q 001618 567 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 630 (1043)
Q Consensus 567 A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 630 (1043)
|..+|.-+++... -+..-++- .. |... +.+.|.+++|..+|+++|...+...
T Consensus 490 aRaifelAi~qp~-ldmpellw--ka-YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 490 ARAIFELAISQPA-LDMPELLW--KA-YIDF--------EIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHhcCcc-cccHHHHH--HH-hhhh--------hhhcchHHHHHHHHHHHHHhcccch
Confidence 9999988887533 23332211 11 2222 1122777888888888777766543
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.2e-17 Score=167.58 Aligned_cols=314 Identities=16% Similarity=0.085 Sum_probs=257.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..+.+.+..++...|...+-.+-. ...-+.+...+..+|.+++..|++.+|+..|+++..++|.+...+-..|.++.+.
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence 345555555665555555544332 2245677788888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 345 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
|+++.--.+...++........-|+.-+.++ ..+++..|+.+-.+++...+. +...+..-|.++...|+.++|+
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHH
Confidence 9999888888888887766667777766666 888999999999888887554 4677888899999999999999
Q ss_pred HHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHH
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 503 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 503 (1043)
-.|..++. +.|....+|..+..+|...|.+.+|...-
T Consensus 355 IaFR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 355 IAFRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999887 45678889999999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHH-HHHH-HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCC
Q 001618 504 RLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 581 (1043)
Q Consensus 504 ~~~l~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 581 (1043)
+.++...|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.+..++..+++.+...+
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-- 469 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-- 469 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--
Confidence 999999999999988886 4443 233447799999999999999999999999999999999999999999988766
Q ss_pred ChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHh
Q 001618 582 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 642 (1043)
Q Consensus 582 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~ 642 (1043)
|...+..||.+ +... +.+.+|+..|..++.++|++..+.-++-.+--.
T Consensus 470 D~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 470 DVNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred ccHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 56667779998 8777 889999999999999999998777766544433
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.82 E-value=1.5e-14 Score=156.20 Aligned_cols=606 Identities=14% Similarity=0.112 Sum_probs=399.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
+..|..--..|++++..-...|..|+.....+..+|+...-...|+++|..-|- +..+|-.........+-..-++..
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 345667777788887766677889999999999999999999999999988773 345565555566677778899999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-------PENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
|++-|+..|... -.....+...++.++|.+.+...+..+ +.+...|..+..+..+.-+...--..-..+
T Consensus 161 yrRYLk~~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKVAPEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhcCHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999999998873 234456778889999999998887542 345566777777666654422222233455
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh
Q 001618 213 QRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKE 289 (1043)
Q Consensus 213 ~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--a~~~ 289 (1043)
+..+...++. ...|..||..|.+.|.++.|..+|+.++...-...+...++-. | -.|++..-.+.- +...
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~----Y---a~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA----Y---AQFEESCVAAKMELADEE 309 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH----H---HHHHHHHHHHHHhhhhhc
Confidence 6666666654 4678888999999999999999988888654222221111111 1 112221111111 1101
Q ss_pred cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----
Q 001618 290 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR----- 363 (1043)
Q Consensus 290 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~----- 363 (1043)
..+.......-..++..-.-.+....-+ =.-++..+|+++.-|.....++ .|+..+-+..|..++. .+|.
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs 385 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGS 385 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCC
Confidence 1111122222222222222111111111 1224567888888888776554 5788899999999876 4443
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccc
Q 001618 364 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 442 (1043)
Q Consensus 364 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 442 (1043)
...+|..++.+| ..|+.+.|...|+++....-. ....-..+|...|..-....+++.|+.+.+.+........
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----- 459 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----- 459 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----
Confidence 357899999999 999999999999998865211 1111267888889899999999999999999987532100
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001618 443 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 522 (1043)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 522 (1043)
+.+|....... ..-.....+|..++.+....|-++.....|.+++.+---.+....+.|.
T Consensus 460 -----------------~~~yd~~~pvQ---~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 460 -----------------LEYYDNSEPVQ---ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred -----------------hhhhcCCCcHH---HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00110000000 0011356678888899999999999999999999988777888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHHc--CCChHHHHHHHHHhhh---ccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH
Q 001618 523 IAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597 (1043)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~ 597 (1043)
.+....-++++.+.|++.+.++ |.-.++|..+-.-..+ --+.+.|...|+++++..|+...-.++. . |...
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyL-l---YA~l 595 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYL-L---YAKL 595 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH-H---HHHH
Confidence 8888888999999999998887 4555666654433332 2358899999999999877533322221 1 2222
Q ss_pred HhhcccChhHHhhhHHHHHHHHHHHHccC-cccHHHHHHhHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhH
Q 001618 598 LRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 675 (1043)
Q Consensus 598 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 675 (1043)
+.+-|-...|+.+|+++-..- +.+...++++-+.-+ ..=-...-..+|+++++..|++ ......+..
T Consensus 596 --------EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrF 664 (835)
T KOG2047|consen 596 --------EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRF 664 (835)
T ss_pred --------HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHH
Confidence 112278888999999876543 334443333321111 1223455678999999998854 344566677
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHH
Q 001618 676 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 723 (1043)
Q Consensus 676 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~ 723 (1043)
+..-...|..+.|...|.-+.+..+...++..|..--..-.+.|+-+.
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 888889999999999999988887555568888777777778888443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.7e-18 Score=169.09 Aligned_cols=250 Identities=16% Similarity=0.127 Sum_probs=229.2
Q ss_pred hHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 480 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
......+|.||..+|.+.+|.+.++..+...|. ++++..|+.+|....++..|+..+...+...|.+...+..++.++.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 344557999999999999999999999998876 8999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
.+++++.|.++|+.+++..+. +..+...++.- ||.. ++.+-|+.+|+++|++.-.++..++++|.|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 999999999999999998776 55566666666 8887 999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhh
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 719 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g 719 (1043)
+.-.++++-++..|++++....++. .-.++|+|+|++....|++..|...|+-|+.. ++++...+.+||..-.+.|
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcC
Confidence 9999999999999999998864332 45799999999999999999999999999987 6677999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 720 QWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 720 ~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
+...|..++..|-.+.|.-....||++++
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred chHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999998888998875
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=1.2e-16 Score=181.38 Aligned_cols=305 Identities=13% Similarity=0.050 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.....|.+.+..|+++.|.+.+.++....|.....++..|.++...|+++.|..+|.++.+..|+....+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34667889999999999999999999999988889999999999999999999999999999999844567777999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCHH
Q 001618 165 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHF 240 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~ 240 (1043)
.|+++.|...++.+++..|+++.++..++.++...|+ ++.++..+.+..+..+.++.... .....+...+..+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 99999999999987554443322 2222223444444
Q ss_pred HHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhh--HHHHHHHHHHcCCHHHHH
Q 001618 241 LVEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSAL 317 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~ 317 (1043)
.+...+..+....+ ..+.++..+..++..+...|++++|...+.++++.. |+.... ...........++...++
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHH
Confidence 44556665554332 223577889999999999999999999999999843 333321 122333344567888999
Q ss_pred HHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001618 318 TNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 392 (1043)
Q Consensus 318 ~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 392 (1043)
..+++.++..|+++ .++..+|.++++.|++++|..+|+ .++...|+... +..++.++ ..|+.++|..++++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 888899999999999999999999 57777787665 55889988 99999999999998876
Q ss_pred HHHh
Q 001618 393 LLKK 396 (1043)
Q Consensus 393 ~~~~ 396 (1043)
..-.
T Consensus 399 ~~~~ 402 (409)
T TIGR00540 399 LMLA 402 (409)
T ss_pred HHhc
Confidence 6433
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.81 E-value=8e-14 Score=150.62 Aligned_cols=593 Identities=11% Similarity=0.118 Sum_probs=412.9
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHH--Hc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLL--AK------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~--~~------g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
+-..+|+++++.-|.+...|+..-..-. -. ..|..--.+|++++-.-.+.+..|+.....++.+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 4577899999999999999987542211 11 236666778888888777788999999999999999999999
Q ss_pred HHHHHHHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 139 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 139 ~~~~~l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
.|.++|..-|-. ...+|-.........|-++-++..|++.|+++|...+-++ ..+...++ .++|.+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 999999988754 1334544555566778888999999999999998754433 33444555 7888888877765
Q ss_pred hC-------CCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 218 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 218 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
.+ |.+...|..+..+..+.-+.-. ...++...+... .......|..||..|.+.|.+++|..+|++++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43 6677888888887776655433 334444444332 12335678999999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--H--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 362 (1043)
...-...++..++...+.. ++..-.+.--+. . ++ +...+-..++..-.-+.....-+ -.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya~F-------EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQF-------EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHHHH-------HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCC
Confidence 7544444444433322221 111110000000 0 11 11222222332222222211111 112456789
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccc
Q 001618 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441 (1043)
Q Consensus 363 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (1043)
+++..|.....++ .|+..+-+..|..++... |......+..++..+|.+|...|+.+.|...|+++.+..-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999998877776 566777888888877653 3333344468899999999999999999999999987421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC---------
Q 001618 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--------- 512 (1043)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------- 512 (1043)
..-.+...+|...|..-....+++.|..+.+.+...-..
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 011235788999999999999999999999988752211
Q ss_pred ---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 513 ---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 513 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
....|..++......|-++.....|++.+.+---.|.+..++|.++....-++++.+.|++.+.+.+.+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 24567777888888899999999999999999999999999999999999999999999999998877666
Q ss_pred HHHHHhhhHHHHHHH--hhcccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHH
Q 001618 584 YATLSLGNWNYFAAL--RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659 (1043)
Q Consensus 584 ~~~~~lg~~~y~~~~--~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 659 (1043)
+-+ .+. |+... +... ...+.|..+|+++|...|. .-..+...+.+-.+-|....|+.+|+++...
T Consensus 547 ~di---W~t-YLtkfi~rygg-------~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDI---WNT-YLTKFIKRYGG-------TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHH---HHH-HHHHHHHHhcC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 532 222 33221 1111 5689999999999998885 2234455566666779999999999998776
Q ss_pred hcCCCCCCchhHHHhHHHHHHHc-----cCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 660 ASGSVFVQMPDVWINLAHVYFAQ-----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 660 ~p~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
.+ ..-.+.+-++|... | ...-...|++|+...|+..-...-...+..-...|..+.|..+|...-++
T Consensus 616 v~-------~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 616 VK-------EAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 53 23333343444331 2 33456789999998665554566667778888899999999999888777
Q ss_pred C
Q 001618 735 A 735 (1043)
Q Consensus 735 ~ 735 (1043)
.
T Consensus 688 ~ 688 (835)
T KOG2047|consen 688 C 688 (835)
T ss_pred C
Confidence 4
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=2.6e-19 Score=193.10 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
..++.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997665421 146788889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHH
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 566 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (1043)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++++|+.++.++++..+ ++..+..+..++...++++.
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988888888888 789999999999999988764 56777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCC
Q 001618 567 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 645 (1043)
Q Consensus 567 A~~~~~~~l~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~ 645 (1043)
+...+.++....+ ..+...+..+|.+ +... |+.++|+.+|++++..+|+|..+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776432 3467788888988 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHH
Q 001618 646 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 725 (1043)
Q Consensus 646 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~ 725 (1043)
++++..++.......| .++.++..+|.+|...|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999998 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 001618 726 KSLLRAIHL 734 (1043)
Q Consensus 726 ~~~~ka~~~ 734 (1043)
.++.+++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888653
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.6e-15 Score=149.51 Aligned_cols=449 Identities=14% Similarity=0.116 Sum_probs=244.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 170 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~ 170 (1043)
-++...+|.-|+.+++..+..+.... ..-+.+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34556667777777766664443322 444556677777777777777776655532 2235566667777777777776
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 171 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 171 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
|...-.+ .|+++-....|-.+..+.++ -++-..+...+-
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd-------------------------------------Ek~~~~fh~~Lq 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND-------------------------------------EKRILTFHSSLQ 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHh
Confidence 6655544 24444333333333333333 222222111111
Q ss_pred hhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q 001618 251 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330 (1043)
Q Consensus 251 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 330 (1043)
+..+-...++.+++..-.|.+|+.+|.+.+. .++.....-..++.+|+++.-|+-+.+++.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113445566666666677777777777776 566666666677778888887877777777777777877
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 408 (1043)
+-+....+...++.=+-..|..-...+... +...+.+-..+-.-+ .-.+-+.|+..+-..+.. -|++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhh
Confidence 777777776666654433444443333321 111121111111111 122334555544444333 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH
Q 001618 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488 (1043)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 488 (1043)
+...|.++++..+|..+.+. ..|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 77777777777777776644 34556666666666
Q ss_pred HHHhcCChHHHHHHHHHHH---Hh------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 489 LLEQIHDTVAASVLYRLIL---FK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~l---~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
++...|+--...+.++-+- .+ .-+.+.....++.+++...++++.+.+++..-...-++....++++..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 6666665433333332221 11 11223334445555555666777777777666666666667777777777
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH-HHHHhHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY-AANGAGV 638 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~-a~~~la~ 638 (1043)
..|++.+|.+.|-++....-.++..-...|+.+ |... +.+.-|..+|-+. ..|.... .+..++.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArC-yi~n------------kkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARC-YIRN------------KKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH-HHhc------------CCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 777777777777655432212222222233444 5555 5555555554332 1233222 3334455
Q ss_pred HHHhcCCchHHHHHHHHHHHHhc
Q 001618 639 VLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 639 ~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
.+...+.+=-|...|..+-.+.|
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCC
Confidence 55566665555555555555554
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.9e-15 Score=151.47 Aligned_cols=452 Identities=15% Similarity=0.148 Sum_probs=279.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHH
Q 001618 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 206 (1043)
Q Consensus 127 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 206 (1043)
+....+|..|+.+++-.+..+......+...+|.|++.+|+|++|...|.-+...+.-+.+.++.|+.++.-.|. |.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HH
Confidence 456678888888888777665544345667788888888888888888877766544455555556555555554 44
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 207 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 286 (1043)
Q Consensus 207 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 286 (1043)
+|..... ++ |..+.....+-.+-++.++-.+-..+....
T Consensus 109 eA~~~~~----------------------------------ka-------~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 109 EAKSIAE----------------------------------KA-------PKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred HHHHHHh----------------------------------hC-------CCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4444333 22 222233333344445566655544443333
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366 (1043)
Q Consensus 287 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 366 (1043)
. +...-.+.++.+.+..-.|++||.+|.+++..+|+.......++.||+++.-++-+.+++.-.+...|+.+.
T Consensus 148 q-------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 148 Q-------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred h-------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 2 222457788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccccc
Q 001618 367 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 443 (1043)
Q Consensus 367 ~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (1043)
+....+... ..|+..++ -..... .+. +.. |..+..+++.-+-
T Consensus 221 A~NLkacn~fRl~ngr~ae~--E~k~la---dN~-~~~-----------------~~f~~~l~rHNLV------------ 265 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAED--EKKELA---DNI-DQE-----------------YPFIEYLCRHNLV------------ 265 (557)
T ss_pred HHHHHHHHHhhhhccchhHH--HHHHHH---hcc-ccc-----------------chhHHHHHHcCeE------------
Confidence 877666544 23332221 111111 110 000 1111111111000
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 001618 444 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 523 (1043)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 523 (1043)
--.+-+.|++++-.++..- +++..+++..
T Consensus 266 ------------------------------------------------vFrngEgALqVLP~L~~~I---PEARlNL~iY 294 (557)
T KOG3785|consen 266 ------------------------------------------------VFRNGEGALQVLPSLMKHI---PEARLNLIIY 294 (557)
T ss_pred ------------------------------------------------EEeCCccHHHhchHHHhhC---hHhhhhheee
Confidence 0011122333333333222 2344444444
Q ss_pred HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccch-------HHHHHHHHHhhhcCCC-CChHHHHHhhhHHHH
Q 001618 524 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-------VKAKETFRAASDATDG-KDSYATLSLGNWNYF 595 (1043)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~ 595 (1043)
|+.+++..+|+.+++. ++|..|.-+...|.+....|+- .-|...|.-+=..... ......-+++.. +|
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FF 370 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HH
Confidence 4455555555444332 3455555444444444444432 2222223222111111 122233345555 66
Q ss_pred HHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhH
Q 001618 596 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 675 (1043)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 675 (1043)
.. .+++..+.++..+-....+|....++++++.+..|++.+|.++|-++.... ..+.......|
T Consensus 371 L~------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~----ikn~~~Y~s~L 434 (557)
T KOG3785|consen 371 LS------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE----IKNKILYKSML 434 (557)
T ss_pred HH------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh----hhhhHHHHHHH
Confidence 66 789999999988888888888888999999999999999999998875432 11334445577
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 676 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 676 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
+.||...|++..|..+|-+ .........++..++..+|+.+.+--|.+.|..+-.++|+.
T Consensus 435 ArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 9999999999999998643 32112226778888999999999999999999888888854
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=4.8e-19 Score=191.06 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=98.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+.+.+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 344 45566666666666666666666666666666666666555555 444
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 279 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 279 (1043)
++ +.+|+.++.++++..+ ++..+..++.++...++++++..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45 6666666666665443 34455556666667777777777776665422 2245566777777888888888888
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
+..|++++. ..|++..+...++.+++..|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 888888877 55666677777777787888888777777777777677777777788888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 360 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 360 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
.+|+++..+..++.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888 778888887777766543
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=8.8e-17 Score=189.27 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 98 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 98 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 456677777777777777776666666665533 23567777777777777776 45566677777777777
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001618 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 248 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (1043)
++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777777777777777777777766 77777777777777777666555555556666777777777766
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001618 249 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328 (1043)
Q Consensus 249 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 328 (1043)
++... .|..+.++..+|.++...|++++|...+.++.. ..+....+...++..|...|+ .|...++.+++..-
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 66432 244556677777777777777777777776654 445555666666667666663 66666666555432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
....-...+..+|.-.|+.+.+... +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223366666777777666665 555443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1e-17 Score=166.04 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=242.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
+++...+...|-..+..++... |. +-..-..+|.||++.|-+.+|.+.++..+...|.. +.+..++.+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHHH
Confidence 4555677777776666655432 21 11223678999999999999999999999998875 678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++..|+..++.+-
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
|+.+|.++++..- ..++.+.++|.+++..++++-++..|++++.....+.....+|+++|.+....|++..|..+|+
T Consensus 343 AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 343 ALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999999998763 4568999999999999999999999999997665566778899999999999999999999999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 374 (1043)
-++..++++.+++.+||.+-.+.|+.+.|..++..+....|...+..++++.+
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999999999999999999887777766543
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.8e-16 Score=186.67 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=214.8
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC---------CHHHHHHHHHH
Q 001618 112 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 177 (1043)
Q Consensus 112 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 177 (1043)
..|.+..+ ++..|..++.. +.+.+|+.+|++++..+|++ ..++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 34455444333 45789999999999999999 677888998877543 37899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001618 178 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257 (1043)
Q Consensus 178 al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 257 (1043)
+++++|++..++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999765 5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Q 001618 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337 (1043)
Q Consensus 258 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 337 (1043)
..+..++.++.+++..|++++|+..+.+++.. .+|....++..+|.++...|++++|...+.++....|....+...+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 55556666777788899999999999998863 2466777888999999999999999999999988888888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001618 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 392 (1043)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 392 (1043)
+..|...|+ .|...++++++.......-...+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999998884 777777776664322222222266666 67777776655 55443
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=2.4e-15 Score=169.61 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=219.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
.+..|...+..|+|+.|.+.+.......+.....++..+.+....|+++.|..+|.++.+.+|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887665543323344445666699999999999999999999998445555668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH--------HHHHHHhcC
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 237 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------la~~~~~~g 237 (1043)
|+++.|...++++++.+|+++.++..++.+|...|+ +++++..+.++.+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999999988877665443221 111111122
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 317 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 317 (1043)
+.+...++.... +...+.++.+...++..+...|+.++|...+.++++ ..+ ....... ......+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 222222222222 122356678888888888888888888888888875 222 2222222 2223458888888
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 318 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 318 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++.. +..++.++ ..|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888888888887544 55688888 8888888888888777653
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.3e-14 Score=152.86 Aligned_cols=446 Identities=14% Similarity=0.070 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.++.|++|++..++++...|+++.+......++.+.++|++|+.+.+.-......+. ..+..|.|.|+.+..++|+.++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 467899999999999999999999999999999999999999965554333222222 2379999999999999999999
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
+ ..++.+ ..+....|.+++++|+|++|...|+..++.+.++.+.......+..... .... +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 8 334444 4567789999999999999999999999887776665544443322211 1111 344444555
Q ss_pred C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 221 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPT-------KSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 221 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
. ....+++.+.++...|+|.+|++++..++.. ...+.. ...+...++.++..+|+..+|..+|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5678999999999999999999999999432 111111 12356788999999999999999999999
Q ss_pred HhcCCCC-CChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHHCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 288 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYP----------DNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 288 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
...+.+. ....+.+++..+-....-++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322221111111 12222222211111 112455666666666677666666655
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchh
Q 001618 356 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 434 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (1043)
..-...|............. ....+..+..++.......|. ....+...++.+.+.+|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 54444444332222222222 222456666665544433222 1356888889999999999999999985542 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh-----
Q 001618 435 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----- 509 (1043)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 509 (1043)
|...+. .....+.+...+..++...++...|..++..++..
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 11123344445555666767766676666666542
Q ss_pred --CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 001618 510 --YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 510 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 558 (1043)
.+.....+..++..-...|+.++|...++++++.+|++..++..+...|
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1222333444455555557777777777777777777766666555443
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=5.7e-15 Score=167.59 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.+|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 357888999999999999998888889999999999999999999999999999875 5667789999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH----HHHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
++.+++..|++ +.++..++.++...|+++.|...+.+.++..+.+...+. ....-....+. ..++...+..+
T Consensus 176 l~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~ 251 (409)
T TIGR00540 176 VDKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNW 251 (409)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHH
Confidence 99999999999 578899999999999999999999999987554443322 11111122222 45556678888
Q ss_pred HHhCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001618 216 FEIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291 (1043)
Q Consensus 216 l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 291 (1043)
....| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk--- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK--- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---
Confidence 88777 58999999999999999999999999999986543321110 13333344556889999999999998
Q ss_pred CCCCCh--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 292 KPHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 292 ~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
..|++. .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666 778899999999999999999999 57778887655 559999999999999999999998653
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=171.46 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=189.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..|+..+.++++++|+|..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777777777777777666 6667777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 236 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.|.-..|.+++..-+.......... .-.+.....+.....+..-..+|..+....+. ...+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcch
Confidence 7777777777776654321000000 00000000001111123334455555543321 256678999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
+|+.|+.+|+.+|...|++...|..||..+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----cHHHHHHHHHHHHHcCCHHHHHH
Q 001618 391 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 391 ~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
+.+.+...... +-.+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99887732111 13566666666666776664433
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=8e-15 Score=165.34 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 198 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 198 (1043)
.+..|.+.+..|+|+.|.+.+.+.....+ .+...+...+.+....|+++.|..+|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34566777778999999988777655433 334445555666699999999999999999999998544 4455899999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH-----HHHHHHHHHHHc
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 273 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~la~~~~~~ 273 (1043)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999976544332211 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
.+-+....++...-. ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 233333333333322 34567788999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 354 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 354 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
+++.++..|+++..++.+|.++ ..+++.+|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987544 566778999999999999999999999874
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=6.7e-16 Score=166.07 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=190.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
+..|+.+++.|++.+|.-.|+.++. .+|....+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 3467888888888888888888887 467888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH-------Hhh
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-------LEL 559 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-------~~~ 559 (1043)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+-+...|........--. -..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 8888888888888888888888888888888888888888888888888888888877654322111000 011
Q ss_pred hccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHH
Q 001618 560 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 638 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~ 638 (1043)
....+..-.+.|-.+....+. .++.....||.+ |+.. +.|++|+.+|+.+|...|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 112244455555555554442 567777778877 7777 88888888888888888888888888888
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC---C-----HHHHHH
Q 001618 639 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---D-----AQILLY 710 (1043)
Q Consensus 639 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~-----~~~l~~ 710 (1043)
.++...+..+|+..|++++++.| ....+++|||.++..+|-|.+|+.+|-.||...+.+. . -.+|..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 88888888888888888888887 6777888888888888888888888888887754421 1 246666
Q ss_pred HHHHHHhhhcHHHH
Q 001618 711 LARTHYEAEQWQDC 724 (1043)
Q Consensus 711 la~~~~~~g~~~~A 724 (1043)
|-.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 66666666665543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=4.2e-15 Score=160.32 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 63 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
...+.++..+.+++...| ..+..|+.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456678888888886443 2356788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001618 139 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218 (1043)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 218 (1043)
.|++++.++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 66788899999999999999999999999999887422211 12233344 78888888766544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=4.7e-15 Score=159.88 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHH
Q 001618 97 GEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p---~-~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 172 (1043)
+..+.++..+.+++...| . .+..++.+|.++...|++.+|+..|++++..+|++ +.+++.+|.++...|+++.|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 467888888988986433 3 36779999999999999999999999999999998 778999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 173 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 173 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++.... ...+....+++++|+..+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999888 99999999999999998873211 1122233445555555554443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=7.9e-15 Score=140.15 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=168.6
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
..+++.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688888899999999999999999999999999999999999999888 888889999999999888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.++.+|.+++|...|+.++..+ ..+..+.++-++|.|..+.|+++.|..+|++++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888887653 2345567788888888888888888888888887 56677777788888888888
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 367 (1043)
+|-.|..+++......+-..+.+.....+-...|+...+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888887777766677777777777777888877777777777777766543
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=7.2e-15 Score=140.42 Aligned_cols=210 Identities=23% Similarity=0.256 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 376 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 376 (1043)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+++.+.|..+ .
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
+|.+++|...|.+++.. |. ...++.++.|+|.|..+.|+++.|..+|++++.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------- 167 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------- 167 (250)
T ss_pred CCChHHHHHHHHHHHhC-CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-------------------------
Confidence 89999999999888763 22 233468889999999999999999999999988
Q ss_pred hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
.+|..+.....++..+...|++..|..+++......+-..+.+.....+....|+-..+..+
T Consensus 168 ------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 168 ------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred ------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 56788888899999999999999999999988888777788888888888889999998888
Q ss_pred HHHHHHHcCCChHHHHH
Q 001618 537 VNEALKVNGKYPNALSM 553 (1043)
Q Consensus 537 ~~~al~~~p~~~~~~~~ 553 (1043)
-.++...+|..++.-..
T Consensus 230 ~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 230 QAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHhCCCcHHHHhH
Confidence 88888888988765433
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=7.6e-14 Score=155.45 Aligned_cols=254 Identities=23% Similarity=0.280 Sum_probs=189.7
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 001618 254 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-- 326 (1043)
Q Consensus 254 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 326 (1043)
...|....+...++..|...|+|+.|+..+..++..+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455666667778888888888888888887776421 12333344556888899999999999999988875
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001618 327 ------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTAR 391 (1043)
Q Consensus 327 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 391 (1043)
+|....++.+|+.+|...|++.+|..++++++.+. |.-...+.+++.++ ..+.+++|..++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33445788889999999999999999998888753 33456677788888 8999999999999999
Q ss_pred HHHHhcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 392 TLLKKAGEEV---PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 392 ~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
++........ .+.+..++|.+|+.+|++.+|..+|++++.......
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------------- 401 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------------- 401 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-------------------------------
Confidence 9887543332 268899999999999999999999999998421000
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh-------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (1043)
....+.....+.++|..|...+.+.+|..+|..+..+ +|+....+.+|+.+|..+|+++.|+++.+.++
T Consensus 402 ----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 402 ----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0023445678889999999999999999988887653 34445667777777777777777777777665
Q ss_pred H
Q 001618 542 K 542 (1043)
Q Consensus 542 ~ 542 (1043)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=7.4e-15 Score=151.08 Aligned_cols=313 Identities=16% Similarity=0.147 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.-....+..++...+|.+|+..|..++...|++ ...|...+.+++.+|+++.|.-..+..+.++|+........+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345666677777777777777777777777777 5667777777777777777777777777777777766666666666
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHH
Q 001618 198 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277 (1043)
Q Consensus 198 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 277 (1043)
..++ ..+|...|+ +.. ++ ...
T Consensus 129 a~~~---~i~A~~~~~--------~~~-------------------------------------~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLK--------SKQ-------------------------------------AY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhh--------hhh-------------------------------------hh-----------HHh
Confidence 6655 444444433 000 00 112
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 278 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (1043)
.|+..++..+......|....+.+.-+.++...|++.+|+..--.++++++.+.++++..|.+++..++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333332222234445566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhh
Q 001618 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 437 (1043)
Q Consensus 358 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (1043)
+.++|+...+-. .+.... ....+..-|.-.++.|++..|.++|..+|.+.|.
T Consensus 230 l~ldpdh~~sk~----------------~~~~~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKS----------------ASMMPK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-- 281 (486)
T ss_pred hccChhhhhHHh----------------HhhhHH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--
Confidence 999997654321 111111 1344556688889999999999999999986441
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHH
Q 001618 438 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 517 (1043)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 517 (1043)
....++.+|.+++.+...+|+..+|+...+.++.++|.+..++
T Consensus 282 -------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 282 -------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred -------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1234677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH
Q 001618 518 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 556 (1043)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 556 (1043)
...|.++..++++++|++.|+++++...+ ......+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 99999999999999999999999998876 555554443
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.1e-15 Score=153.81 Aligned_cols=275 Identities=19% Similarity=0.201 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
-+...|..|+..+..++...|.++..|..++..+...|+|++|....++.+...|..+......+.|+...++..+|...
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHHH---------------HhC---CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 140 YKRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 140 ~~~~l---------------~~~---p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|+..- ..+ |.+ ..+.+..+.|+..+|+++.|...--..+++++.+.++++..|.++....+
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc
Confidence 54211 111 222 34567788999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 281 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 281 (1043)
.+.++..|++++.++|....+-.. + ..+.....+...|.-.++.|+|..|.+
T Consensus 219 ---~~ka~~hf~qal~ldpdh~~sk~~----~---------------------~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 219 ---ADKAINHFQQALRLDPDHQKSKSA----S---------------------MMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred ---hHHHHHHHhhhhccChhhhhHHhH----h---------------------hhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 999999999999999987643221 0 012333567778888999999999999
Q ss_pred HHHHHHHhcCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 282 YYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 282 ~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
.|..++..-|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.++..++++++|++.|+++++.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999974332 12335568889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 001618 361 DPR 363 (1043)
Q Consensus 361 ~p~ 363 (1043)
..+
T Consensus 351 ~~s 353 (486)
T KOG0550|consen 351 EKD 353 (486)
T ss_pred ccc
Confidence 644
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=1.2e-13 Score=153.95 Aligned_cols=255 Identities=25% Similarity=0.229 Sum_probs=212.2
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 290 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 290 (1043)
.+|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 457777888889999999999999999999999752 1234445556679999999999999999999999743
Q ss_pred ---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 291 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 291 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..+|....++.+||.+|...|++.+|..++++++.+. |.-...+..++.++..++++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567777889999999999999999999999998863 23346788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 360 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 427 (1043)
Q Consensus 360 ~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~ 427 (1043)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|..+|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 23467889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHH
Q 001618 428 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 507 (1043)
Q Consensus 428 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 507 (1043)
+++.+.. ... ...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~---~~g---------------------------------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMK---LCG---------------------------------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH---HhC---------------------------------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9987421 000 0456788899999999999999999999999887
Q ss_pred H
Q 001618 508 F 508 (1043)
Q Consensus 508 ~ 508 (1043)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.5e-14 Score=152.15 Aligned_cols=177 Identities=21% Similarity=0.293 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|.+++..
T Consensus 49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 49 VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555543
Q ss_pred C--CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001618 147 H--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 147 ~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
. |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.++...|+ +++|+..+++++...|.++.
T Consensus 129 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 129 PLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---YKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHH
Confidence 2 111 23344455555555555555555555555555555555555555555555 55555555555555444444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTE 247 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~ 247 (1043)
.+..++.++...|+.+.|..+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444444444444433
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=2.4e-14 Score=150.58 Aligned_cols=202 Identities=23% Similarity=0.280 Sum_probs=120.9
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++...|.+..++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666 666666666666666666655555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
++...|++++|...+..++.... .+.....+..+|.++...|++++|...|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 55555555555555555553211 123334555566666666666666666666665 33444455666666666666
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
++++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666665656666666666666666666666665554443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.67 E-value=2.2e-13 Score=154.13 Aligned_cols=449 Identities=14% Similarity=0.122 Sum_probs=242.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
.+.++....++...|++++|+..+......-++....+-.+|.+++++|++++|...|..++..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 34555566666677777777777766666666666666667777777777777777777777777766 44455555555
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 163 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 163 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.... ....-...|+......|....+.. +...+. .|+ .+...+. ++...+.. ..|.+...+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3222 344445555555555554332211 111111 111 1322222 22222221 2233333333333211
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHH
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 315 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 315 (1043)
....-...++......... .+.+. ... .....+|. ...+++.+|+.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 1111111111111110000 00000 000 00001111 13456778888888888888
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 316 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
|+.++++++...|+.++.+...|.++-..|++.+|...++.+-.+++.+..+....+..+ ..|+.++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 888888888888888888888888888888888888888888888888877777777777 8888888887665443221
Q ss_pred HhcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 395 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 395 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
. +...+ .......|.+|.+.|++..|+..|..+.+... .+ ..-.+++...++....+..|-.+..
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~--~~-----~~DQfDFH~Yc~RK~t~r~Y~~~L~ 363 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD--DF-----EEDQFDFHSYCLRKMTLRAYVDMLR 363 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HH-----hcccccHHHHHHhhccHHHHHHHHH
Confidence 1 00001 23445568889999999999999988876421 00 0111223333333222222222222
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHH------------------HHHHHHHHH----------------------
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAA------------------SVLYRLILF---------------------- 508 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~~l~---------------------- 508 (1043)
....+..+|....+.....++|..+.+.... ....++.-+
T Consensus 364 ~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~ 443 (517)
T PF12569_consen 364 WEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQ 443 (517)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Confidence 2222333344444444444444432211100 011110000
Q ss_pred ----------hCcCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHh
Q 001618 509 ----------KYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574 (1043)
Q Consensus 509 ----------~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (1043)
..+.+.+ -+|.-+... .-.++|..+++-++...|++..+|..--.+|++.|++--|++.+.++
T Consensus 444 ~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 444 NKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred ccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 0000010 012222222 34677899999999999999999999999999999999888887653
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=7.5e-13 Score=132.28 Aligned_cols=300 Identities=20% Similarity=0.246 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHhHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 161 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~----~~~~~~~lg~~ 161 (1043)
-|..|.-++...+.++|+..|-.+++.+|....+.+.+|.++.+.|..+.|+.+.+..+. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999999999999999999999999887654 4554 23467789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
|+..|-++.|...|........--..++..|..+|....+ +.+|+...++..++.+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~e--------------- 178 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRVE--------------- 178 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchhH---------------
Confidence 9999999999999998876544466788888899988888 9999999998888887654221
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
-+..+..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|+.|++.++
T Consensus 179 -----------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 179 -----------------IAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred -----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 123444555555556666666666666665 455566666666666666666666666666
Q ss_pred HHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 322 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 322 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
.+++.+|.. +++.-.|..+|.++|+.++.+..+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 666666654 3455566666666666666666666666655432 2333344433 333344444444333332222
Q ss_pred CCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHc
Q 001618 400 EVPIEVLNNIGVIH---FEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 400 ~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~ 431 (1043)
...++.+.... ..-|...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 23333333222 234455555555555554
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.4e-13 Score=134.72 Aligned_cols=295 Identities=20% Similarity=0.182 Sum_probs=197.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 237 (1043)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+.+.+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~----------------------- 94 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQT----------------------- 94 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHH-----------------------
Confidence 44445555555555555555555555555555555555555555 5555555443
Q ss_pred CHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 238 QHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
++..++.. .....+.+.||.-|...|-++.|..+|..... .+.....+.-.|..+|-...+|++|
T Consensus 95 -----------L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d---e~efa~~AlqqLl~IYQ~treW~KA 160 (389)
T COG2956 95 -----------LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD---EGEFAEGALQQLLNIYQATREWEKA 160 (389)
T ss_pred -----------HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---chhhhHHHHHHHHHHHHHhhHHHHH
Confidence 33322111 12234667777788888888888888877764 2333445677777888888888888
Q ss_pred HHHHHHHHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 317 LTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
|++.++..++.+.. ...+..++..+....+.+.|+..+.++++.+|..+.+-+.+|.+. ..|+++.|++.++.+
T Consensus 161 Id~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 161 IDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 88888888776653 356677777777778888888888888888888888888888888 888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC
Q 001618 391 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 470 (1043)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1043)
++..+.. .++++..+..+|...|+..+.+.++.++....
T Consensus 241 ~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~------------------------------------- 279 (389)
T COG2956 241 LEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN------------------------------------- 279 (389)
T ss_pred HHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-------------------------------------
Confidence 7765543 46778888889999999999999988887631
Q ss_pred CCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---CChhHHHHHHHHHH
Q 001618 471 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR---NNLQLSIELVNEAL 541 (1043)
Q Consensus 471 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 541 (1043)
..+.+...++.+.....-.+.|..++.+-+..+|+-- ...++......- |...+.+..++.++
T Consensus 280 -------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2334455566666666677888888888888888743 333443333222 23444444444443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=2.1e-12 Score=145.42 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ ....+..+.++...|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78888999999999988999999888888888777654 45677788888999999999999999999999884 333
Q ss_pred HhHHHHHHHcCCHH----HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 156 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
.. +..+..+|.+. .+...+......+|....++..+|.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 55555555443 34444433334566677777788888888888 888999999999988888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
+++..|++++|+.++..++...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888765433222 234566788888888888888888888753
No 87
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=2.7e-13 Score=145.25 Aligned_cols=222 Identities=13% Similarity=-0.035 Sum_probs=193.4
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+....++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++..+| .+++++.++.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34455566566666788899999999999999999999999999999999998 67999999999999999999999999
Q ss_pred HHHhhhccch--HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHH
Q 001618 555 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 632 (1043)
Q Consensus 555 ~~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 632 (1043)
++++...|.. ..++.++.+++...|. +..+|...+.+ +... |.+++|+.++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888874 7889999999998876 88899999988 7777 89999999999999999999999
Q ss_pred HHHhHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHH----ccCHHHHHHHHHHHHHHhcC
Q 001618 633 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 633 ~~~la~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~ 701 (1043)
|+..+.++.+. |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998876 333 478888899999998 788999999999988 45667899999888775 5
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001618 702 NTDAQILLYLARTHYEA 718 (1043)
Q Consensus 702 ~~~~~~l~~la~~~~~~ 718 (1043)
++.+.++..|+.+|...
T Consensus 252 ~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 252 SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCcHHHHHHHHHHHHhh
Confidence 66688999999999863
No 88
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=3.5e-13 Score=144.41 Aligned_cols=226 Identities=14% Similarity=0.003 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKR 142 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~ 142 (1043)
.|.+|..+|..++. ..+.+++|+..+.+++..+|.+..+|..++.++...| ++.+++.++.+
T Consensus 35 ~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 35 EFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 45566666665544 3467888999999999999999999999999999988 68999999999
Q ss_pred HHHhCCCChhHHHHhHHHHHHHcCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 143 ALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 143 ~l~~~p~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
++..+|.+ ..+|...+.++..+|.. ..++.++.++++.+|.|..+|...+.++...|. +++++..+.++++.+|
T Consensus 98 ~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 98 VAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCC
Confidence 99999998 66788889888888874 678889999999999999999999999998888 9999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
.+..+|+..+.++...|... . .....+.++.+..+++. ..|.+..+|
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW 220 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESPW 220 (320)
T ss_pred CchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCHH
Confidence 99988888877655432100 0 00012345566656665 456666677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Q 001618 301 YGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343 (1043)
Q Consensus 301 ~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 343 (1043)
+.++.++.. .+...+|+..+..++...|.++.++-.|+.+|..
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 777777666 3445667777777777777777777777777765
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=3.1e-12 Score=144.86 Aligned_cols=324 Identities=16% Similarity=0.140 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 45666777888889999999999877554 23456778
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHcCCCh---------
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYP--------- 548 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~--------- 548 (1043)
+-..|.++..+|++++|...|..++..+|++...+..+..+..... +...-..+|.......|...
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 8888999999999999999999999999999888888887773332 45566777777776666432
Q ss_pred -----------------------HHHHHHHHHhhhccchHHHHHHHHHhhhc---C-----------CCCCh--HHHHHh
Q 001618 549 -----------------------NALSMLGDLELKNDDWVKAKETFRAASDA---T-----------DGKDS--YATLSL 589 (1043)
Q Consensus 549 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~-----------~~~~~--~~~~~l 589 (1043)
.+...+-.+|....+..-...++...+.. . ..+.. ++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 23333333333333322222233322211 0 01122 344444
Q ss_pred hhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001618 590 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 669 (1043)
Q Consensus 590 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 669 (1043)
+.. |... |++++|+.++++++...|+.+..+...|.++.+.|++.+|...++.++.+++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 544 5454 9999999999999999999999999999999999999999999999999886 444
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCC--Ccc
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 740 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~--~~~ 740 (1043)
-+-...+..+++.|+.++|...+....+...++ .+ .......|.+|++.|++..|++.|..+.+..-+ +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555566888999999999999954443321101 11 223346789999999999999999888877553 233
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCC
Q 001618 741 LRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAAS 788 (1043)
Q Consensus 741 ~~~nla~~~~~~~~~~l~~~~~~~~~l~~a---~~~l~~a~~~~~~l~~~~ 788 (1043)
+-|+ .+|+.++..+..-.+-+..+.|... +.-...+++++..|.+..
T Consensus 343 fDFH-~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFH-SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHH-HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 3334 3456777765544444333444332 556678899999998754
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=1.2e-12 Score=147.22 Aligned_cols=307 Identities=15% Similarity=0.079 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112 (1043)
Q Consensus 36 ~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 112 (1043)
+....+..++.+|...|... .|...+.++....|.+ ....+..+.++...|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888888888887655 5566666666665544 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 113 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 113 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
+|.+..++.. +..++..|++..+...+.+++ ..+|.. ...+..+|.++...|++++|...+++++.++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999987775 666666555544444444444 334444 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH-H
Q 001618 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 263 (1043)
Q Consensus 189 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~ 263 (1043)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++......+..... .
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887443 345679999999999999999999986433211111111 0
Q ss_pred H-HHHHHHHHcCCHHHHHHH--H-HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------c
Q 001618 264 Y-NLARSYHSKGDYEKAGLY--Y-MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------N 330 (1043)
Q Consensus 264 ~-~la~~~~~~g~~~~A~~~--~-~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~ 330 (1043)
. .+...+...|....+..+ + .......+. +.........+.++...|+...|...+..+...... .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 222233333432222222 1 111110001 112222234566666677777776666665442211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..+....+.++...|+++.|+..+..++.
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555566666666666655554
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.4e-12 Score=126.73 Aligned_cols=423 Identities=16% Similarity=0.104 Sum_probs=272.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A 171 (1043)
.+....+|..|++++..-...+|.+...+..+|.||+...+|..|-.+|.+.-...|.. ...++..+..+++.+.+..|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHH
Confidence 34677889999999999999999999999999999999999999999999999999998 67788899999999999999
Q ss_pred HHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001618 172 RQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTET 248 (1043)
Q Consensus 172 ~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (1043)
+.+...+... |. .......-+.+....++ +..+..+++ .-| +.....+..|.+.++.|+|+.|.+-|+.
T Consensus 98 LrV~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 98 LRVAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 9888766532 22 22333334444455555 444444443 334 4667788888888888999988888888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001618 249 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327 (1043)
Q Consensus 249 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 327 (1043)
+++..... +..-++++.+++..|++..|+.+...++... ...|........-|.--...|+. +.....+
T Consensus 170 AlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~Sa---- 239 (459)
T KOG4340|consen 170 ALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQSA---- 239 (459)
T ss_pred HHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHHH----
Confidence 88766443 3677788888888888888888888777532 12333211100000000011111 1111111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHH
Q 001618 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEV 405 (1043)
Q Consensus 328 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 405 (1043)
-.+++...+.++++.++++.|.+.+..+--.. .-++..+.+++..-..+++.....-+.-.+.+. +.+.++
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-----PfP~ET 312 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-----PFPPET 312 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-----CCChHH
Confidence 24567778889999999999988765432211 224677777777667777777777666666653 346899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHh
Q 001618 406 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 485 (1043)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1043)
+.++-.+|++..-|+.|...+-+--... . .-....+++
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------y-k~L~~Yly~ 350 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------Y-KFLTPYLYD 350 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------H-HHhhHHHHH
Confidence 9999999999988888888775422210 0 001122233
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 486 LARLL-EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 486 la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
+-..+ ...-..++|.+-+..+-....+.......-......+++ ...+++.|...+++. ..+....+++|+..
T Consensus 351 LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~ 427 (459)
T KOG4340|consen 351 LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNL 427 (459)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Confidence 32222 223445555554444332211111111111111111221 233555566666553 45778899999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYA 585 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~ 585 (1043)
.+|..+.+.|....+....++.+-
T Consensus 428 ~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 428 EDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cccHHHHHHHHHHHhhhcccceee
Confidence 999999999999998877777654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.3e-11 Score=121.59 Aligned_cols=288 Identities=13% Similarity=0.076 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.++..|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.|..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
...+... |.....+.-.-+.+.+..+++..+....++.- ..+........|.+..+.|+ ++.|++-|+.+++..
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVS 174 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhc
Confidence 8876543 44334455556777888899888887776532 12567778899999999998 999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCC-------------------------chHHHHHHHHHHHHc
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSK 273 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~-------------------------~~~~~~~la~~~~~~ 273 (1043)
..++.+.+.++.+.++.|++..|+++...++...- ..|. ..+++...+.++++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 99999999999999999999999999988885321 1111 123455556666777
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
|+++.|...+..+--.. .....+..+++++..- ..+++.....-+.-++.++|--.+...++-.+|++..-|+.|..+
T Consensus 255 ~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 77776665543321100 0111223344444332 234455555556666666665566677777777776666666655
Q ss_pred HH
Q 001618 354 LR 355 (1043)
Q Consensus 354 ~~ 355 (1043)
+-
T Consensus 333 LA 334 (459)
T KOG4340|consen 333 LA 334 (459)
T ss_pred Hh
Confidence 43
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=1.9e-12 Score=135.98 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=93.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--
Q 001618 78 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 152 (1043)
Q Consensus 78 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~-- 152 (1043)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456788999999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHH
Q 001618 153 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALV 190 (1043)
Q Consensus 153 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~ 190 (1043)
.+++.+|.++... |+++.|+..|++++..+|++..++.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 2678888888876 6677777777777777777655443
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=4e-12 Score=133.48 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q 001618 113 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 187 (1043)
Q Consensus 113 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 187 (1043)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001618 188 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 262 (1043)
Q Consensus 188 a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 262 (1043)
+++.+|.++.... +.+.+.+|+..|.+++..+|.+..++..+..+....+ . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------~---------~~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------R---------LAGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------H---------HHHH
Confidence 6888899888751 1123899999999999999998765533322211100 0 0122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001618 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328 (1043)
Q Consensus 263 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 328 (1043)
...+|..+...|++.+|+..|..++...+..|....+++.+|.++...|++++|+.+++.+...+|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345666666777777777777777665555555566666677777777777777666666555444
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=6.8e-13 Score=125.82 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
..+|++++..+|++ ++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56789999999874 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++.++..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888776544
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=1e-09 Score=114.01 Aligned_cols=297 Identities=18% Similarity=0.112 Sum_probs=200.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
..-|..-+..|+|.+|.....+.-+..+....+++.-+...-.+|+++.|-.++.++-+..++..-.+.+..+..+...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 33566667789999999999888887777778888888888889999999999999888866665677788888888999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH---HHHHH--HHHhcCCHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL---NYLAN--HFFFTGQHFL 241 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~--~~~~~g~~~~ 241 (1043)
+++.|......++...|.++.++.....+|...|+ +.....++.+.-+..--+..-. -..+. ++-..++-..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998888889998888 7777777766665442221111 11110 1111111111
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
+..+..---..+..-..++.....++.-+...|+.++|..+...+++.. -+. . +..-.-....+++..-++..+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHH
Confidence 1211111111111112335666667777777777777777777777532 111 1 111122335667777777777
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
+.++..|+++..+..||.++.+.+.+.+|..+|+.+++..| +...+..++.++ ..|+...|-..++.++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777665 345566777777 777777777777776644
No 97
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=2.4e-12 Score=132.01 Aligned_cols=297 Identities=20% Similarity=0.201 Sum_probs=203.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCCCChhhHHHHHH
Q 001618 230 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~la~ 305 (1043)
+.-+++.|++...+.+|+.+++....+ ...+.+|..+|.+|+.+++|.+|+++...-+. .+++......+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445566677777777777776654322 22345677788888888888888887654332 22233444556677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 359 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~ 359 (1043)
++...|.|++|+.++.+-+.+.. ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988887765432 134688889999887754 3455566655554
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 360 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 360 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+... ...++-+||..| ..|+++.|+...+.-+.+....++... ..++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4221 245667788878 889999999888877777776655433 46788899999999999999999998876
Q ss_pred chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc
Q 001618 432 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511 (1043)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 511 (1043)
+... +..........|.||..|.-..++++|+.++.+-+.+..
T Consensus 264 LAie-------------------------------------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIE-------------------------------------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHH-------------------------------------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4221 112234567888899999998999999998887665432
Q ss_pred ------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc----CC--ChHHHHHHHHHhhhccc
Q 001618 512 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GK--YPNALSMLGDLELKNDD 563 (1043)
Q Consensus 512 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l~~~~~~~g~ 563 (1043)
....+++.||..+...|..+.|+.+....+.+. .. ...+..++..+....|.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 235678888888988999888888877766543 11 23345555555444444
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=7e-11 Score=139.37 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=149.7
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001618 76 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 151 (1043)
Q Consensus 76 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~---- 151 (1043)
...+|.+..+|..++..+...|++++|+..++..+..+|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4567889999999999999999999999999999999999999999999999999998888766 6666555541
Q ss_pred --------------hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 152 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 152 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + +++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 134555555555555555555555555555555555555555555555 4 5555555555544
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 297 (1043)
. |+..++|..+..+..+++... |.+...+ ..+.+++..... ....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f----------------~~i~~ki~~~~~-~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFF----------------LRIERKVLGHRE-FTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHH----------------HHHHHHHHhhhc-cchhH
Confidence 3 333344444444444444322 2222222 122222221110 11122
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..+.-+-..|...++|++++.++..+++.+|+|..+...++.+|...
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 33444556777888899999999999999999988888888888743
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=2.1e-11 Score=122.11 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 139 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 139 (1043)
+...+++..+.++++.+|+++..|+.+|.+|...|+++.|+..|++++...|+++.++..+|.++ ...|+ +.+|+.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566666777777777777777777777777777777777777777777777777777777654 45555 4677777
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
+++++..+|++ ..+++.+|.+++..|++++|+.+|+++++++|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 55666677777777777777777777777666543
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.4e-09 Score=112.99 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=228.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQAN 200 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~ 200 (1043)
.-|..-+..|+|..|.+...+.-+..+.. ...++.-+.+.-++|+++.|-.++.++-+..++ ...+.+..+.+....|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34555567899999999999977666665 666777888999999999999999999998554 5567888999999999
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH--HHHcCCHHH
Q 001618 201 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHSKGDYEK 278 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~--~~~~g~~~~ 278 (1043)
+ +..|...+.+++...|.++.++.....+|+..|++.....++..+.+..-.++....-+-..+.. +...++-..
T Consensus 168 d---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 D---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred C---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 99999999999999999999999999999999999999999998887543333222222222111 112222222
Q ss_pred HH---HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 279 AG---LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 279 A~---~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+. .+++..-... ...+.....++.-+..+|+.++|.+....+++..-+.. ....+ -..+.++...=++..+
T Consensus 245 ~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh---hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHH
Confidence 22 2333332222 22345567788889999999999999999998764432 22222 2345688899999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 356 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+.++..|+++.++..||.++ ..+.|.+|..+|+.++...+ +...+..+|.++.+.|+...|.+.+++++.
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999998887644 378889999999999999999999999985
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-11 Score=127.04 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhc---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCC
Q 001618 276 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 346 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 346 (1043)
++.|..+|..-+... ...-....++-+||..|+-+|+|+.|+...+.-+.+... ...++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555555443321 122223456788899999999999999888776655322 23688899999999999
Q ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCC
Q 001618 347 IEKAQELLRKAAKID------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 418 (1043)
Q Consensus 347 ~~~A~~~~~~~l~~~------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~ 418 (1043)
++.|+++|+..+.+. .......+.||..| ...++..|+.++.+-+.+....++.. ...+++.+|..+...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999876542 22356678899999 88899999999999888876654332 25788999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 001618 419 FESAHQSFKDALGD 432 (1043)
Q Consensus 419 ~~~A~~~~~~al~~ 432 (1043)
.++|+.+....+.+
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=9.7e-10 Score=140.04 Aligned_cols=387 Identities=13% Similarity=0.029 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGH 339 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 339 (1043)
..+...+..+...|++.+|+..+..+- ..+.........+..+...|.+..+..++..+-. ....++......+.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 445566777888899988887665443 2222233345566777788888877776655311 11234455677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 001618 340 IYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 409 (1043)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 409 (1043)
++...|++++|...+..+....+. ...+...++.++ ..|+++.|..++..++...+.............+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 888999999999999888654221 123344566677 8999999999999888753321110113456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
|.++...|+++.|...+.+++...... .........+.+++.+
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~-------------------------------------g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQH-------------------------------------DVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------------------cchHHHHHHHHHHHHH
Confidence 999999999999999999998642100 0111234567788999
Q ss_pred HHhcCChHHHHHHHHHHHHhCc--------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC-----ChHHHHHHHH
Q 001618 490 LEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGD 556 (1043)
Q Consensus 490 ~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~ 556 (1043)
+...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 9999999999999999887422 12334567788889999999999999998876432 2445667888
Q ss_pred HhhhccchHHHHHHHHHhhhcCCCCC-hHHH-HH---hhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH
Q 001618 557 LELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 631 (1043)
++...|++..|...+..+........ ...+ .. +....+... |+.+.|..++.......+....
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccch
Confidence 99999999999999999876532211 1111 00 011102222 7788888887776553322221
Q ss_pred ----HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 632 ----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 632 ----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
....++.++...|++.+|...|++++......... ....++..+|.++..+|+..+|...+.+++..+.
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 24567888888888889988888888765332211 2345677788888888988889999888888764
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.38 E-value=9.4e-12 Score=118.03 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 182 (1043)
..+|++++..+|++ +..+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46788999999875 5678999999999999999999999999998 7789999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 183 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
|+++.+++.+|.++...|+ +++|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999988887776654
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.1e-10 Score=108.78 Aligned_cols=210 Identities=18% Similarity=0.059 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 378 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 378 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
.+.++-+......+...+.. -.+....++-.+..+....|..+-|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34555555555555444432 1112245556667778889999999999988765
Q ss_pred hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
..|.+..+...-|..+...|++++|+++|..+++.+|.+..++.+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 537 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 537 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
+...+..++.+.++|..++.+|+..|+|.+|.-++++++-..|- .+..+..++.+.|..... .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~----------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGA----------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhH----------HHHHHHH
Confidence 99999999999999999999999999999999999999988776 555566788884444422 6789999
Q ss_pred HHHHHHHccCcccHHHHHHhHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
.+|.++++++|.+..+++++-.+..
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHHH
Confidence 9999999999999888888755443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=5.6e-09 Score=133.12 Aligned_cols=366 Identities=15% Similarity=0.088 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
++..|+.++..+-.. +.-.......+..+...|.+..+...+..+-. ....++......+.+++..|++.+|..++..
T Consensus 356 ~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 356 FPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344666555443111 11123344457777888998887777665411 1123345567788888999999999999998
Q ss_pred HHHhCCC--------ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhhhHHhHHHHH
Q 001618 143 ALQVHPS--------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGM 209 (1043)
Q Consensus 143 ~l~~~p~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~A~ 209 (1043)
+....+. ....+...++.++...|+++.|...++.++...|... .+...+|.++...|+ +..|.
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~ 511 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARAL 511 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHH
Confidence 8765322 1234455678888999999999999999998655422 345677888888888 99999
Q ss_pred HHHHHHHHhCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHHcCCHHH
Q 001618 210 EKMQRAFEIYPY------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEK 278 (1043)
Q Consensus 210 ~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~ 278 (1043)
..+.+++..... ...++..++.+++..|++..|...+..++...... +.....+..+|.++...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999998875322 12456778999999999999999999988653321 2223446678999999999999
Q ss_pred HHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHH----HHHHHHHHHcCCHHH
Q 001618 279 AGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEK 349 (1043)
Q Consensus 279 A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~ 349 (1043)
|...+..++..... ......++..++.++...|+++.|...+..+..+.+.. .... ......+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 99999998764321 12234556678999999999999999999987753321 1111 112344556789999
Q ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 001618 350 AQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 350 A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
|...+.......+... ..+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998877654322222 2245778888 89999999999999998866544332 2467888999999999999999
Q ss_pred HHHHHHHcch
Q 001618 424 QSFKDALGDG 433 (1043)
Q Consensus 424 ~~~~~al~~~ 433 (1043)
..+.+++...
T Consensus 752 ~~L~~Al~la 761 (903)
T PRK04841 752 RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=1.5e-10 Score=114.06 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=145.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001618 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~ 147 (1043)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555566677888888 8888888888888888888888888888888888778888888888888888888888888
Q ss_pred CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 148 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 148 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+ ++.|..++..+....+.+..+..
T Consensus 131 p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 131 PTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred CCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHH
Confidence 888 67788888888888888888888888888888888888888888888888 88888888888877777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
+|+.+....|++..|..+...-+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccc
Confidence 88888888888877777665433
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=6.6e-10 Score=108.02 Aligned_cols=166 Identities=17% Similarity=0.092 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
..+-|..+++.+....|.+..+....|..+-..|++++|+++|+..+..+|.|..++.....+...+|+--+|++.+...
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34477788887777778888888888888888888888888888888888888888777777777788888888888888
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 223 (1043)
+...|.+ ..+|..++.+|...|+|.+|.-+++.++-+.|.++..+..+|.++...|-..++.-+..+|.++++++|.+.
T Consensus 147 L~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 147 LDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 8888888 667888888888888888888888888888888888888888888777777778888888888888888776
Q ss_pred HHHHHHH
Q 001618 224 MALNYLA 230 (1043)
Q Consensus 224 ~~~~~la 230 (1043)
.+++.+.
T Consensus 226 ral~GI~ 232 (289)
T KOG3060|consen 226 RALFGIY 232 (289)
T ss_pred HHHHHHH
Confidence 6665543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=9e-11 Score=130.05 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 39 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 118 (1043)
Q Consensus 39 ~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 118 (1043)
.++.....||..+|... +|..+..+-++ .|+++..|..+|.+.....-|++|.++++..- ..
T Consensus 425 emw~~vi~CY~~lg~~~-----------kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s------ar 486 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHG-----------KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS------AR 486 (777)
T ss_pred HHHHHHHHHHHHhcccc-----------hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh------HH
Confidence 35555666666666444 55555555555 45556666666666555555555555555442 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
+...+|...+..++|.++...++..+.++|-. ...|+.+|.|.++++++..|..+|.+++.++|++..+|.+++..|..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 44555555555666666666666666666666 45566666666666666666666666666666666666666666666
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 252 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 252 (1043)
.++ -.+|...+.++++.+-.+..+|-+...+....|.+++|++.+.+.+..
T Consensus 566 ~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred Hhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 665 666666666666666555555555555555555555555555555543
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=1.3e-10 Score=116.46 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH-HHccC--HH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 686 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-~~~g~--~~ 686 (1043)
++.++++..+++++..+|++..+|..+|.++...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 7899999999975 67787 59
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 687 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 687 ~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+|+..++++++. ++.++.+++.+|.+++..|++++|+.+|++++++.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999 6778999999999999999999999999999999987653
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.29 E-value=7e-11 Score=111.95 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=110.0
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001618 70 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149 (1043)
Q Consensus 70 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~ 149 (1043)
..|.+++..+|.+..+.+.+|..++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 150 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
+ ..+++.+|.++...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 67789999999999999999999999999999876643
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=1.5e-10 Score=136.70 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=177.2
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+|.+..++..|+..+...+++++|+.+++..+..+|+....|+.+|.++...+++..+.-+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67889999999999999999999999999999999999999999999999888886666544 44444433
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 634 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 634 (1043)
..++ .+..++-..+...+. +.++++.+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333333333333333 56688999999 9998 9999999999999999999999999
Q ss_pred HhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----------
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 704 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 704 (1043)
++|..|... ++++|+.++.+++..+ ...++|..+.+++++.+..-+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998863 3445666666666666655322222
Q ss_pred --------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001618 705 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 750 (1043)
Q Consensus 705 --------~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~ 750 (1043)
..++.-|=..|...++|++++.+|+.+++.+|.|..+++.++.||.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2333333367777899999999999999999999999999999983
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.29 E-value=2.1e-06 Score=98.20 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHH----HHHccCH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV----YFAQGNF 685 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~----~~~~g~~ 685 (1043)
+.+-+|+-+++..+..+|.|...-..+..+|.-.|-+..|...|..+--..- -...+|+. +...|++
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I---------Q~DTlgh~~~~~~~t~g~~ 523 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI---------QTDTLGHLIFRRAETSGRS 523 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh---------hhccchHHHHHHHHhcccc
Confidence 6788999999999999999999999999999999999999999987643321 11233433 4556899
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 686 ALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 686 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
.-+...+...++.|. ++-.++..+++.+|
T Consensus 524 ~~~s~~~~~~lkfy~-~~~kE~~eyI~~AY 552 (932)
T KOG2053|consen 524 SFASNTFNEHLKFYD-SSLKETPEYIALAY 552 (932)
T ss_pred hhHHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 999999999998873 33344555555544
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.27 E-value=7.4e-10 Score=109.24 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|...+..|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666666777789999989 999999999999999999999999889988 5667779999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 001618 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 259 (1043)
Q Consensus 180 ~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 259 (1043)
.+.|+++.+|..+|.+|.+.|+ ++.|...|.+++++.|..+.+.++++..|+..|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999988654 456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 260 SHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 260 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
..+..+++.+....|++..|..+...-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6889999999999999999987765443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=7.2e-08 Score=107.65 Aligned_cols=283 Identities=15% Similarity=0.089 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc----CCCCC
Q 001618 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN----DGNHV 473 (1043)
Q Consensus 398 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 473 (1043)
....++.++..-+..+....+|++|..++-.+.+......+.. .+.....+.+.+ .....
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~----------------~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK----------------NRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCCCchhHHHHHhcCcCcCCC
Confidence 4455688999999999999999999988765544211110000 011111111111 11111
Q ss_pred CCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHH
Q 001618 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 553 (1043)
Q Consensus 474 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (1043)
........++..+|.++.++|.|..|.+-|.++=. .+..-..+++.|+.++-.-..+. ....++|.+
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt~KI~FFAn~-----sRqkEiYIm 1205 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDTQKIRFFANT-----SRQKEIYIM 1205 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCcceEEEEeec-----cccceeeee
Confidence 11123456888999999999999999988877421 22233445566665542211110 112222222
Q ss_pred HHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHH
Q 001618 554 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633 (1043)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 633 (1043)
+.-|++.-+|..--+.++.++..+.+ ..++-.|++. |-..+..+- .+-.+|++|...++.+
T Consensus 1206 -AANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAqiEi----ee~q~ydKa~gAl~eA----------- 1266 (1416)
T KOG3617|consen 1206 -AANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQIEI----EELQTYDKAMGALEEA----------- 1266 (1416)
T ss_pred -hhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHHhhH----HHHhhhhHHhHHHHHH-----------
Confidence 22234444444444444444333322 1223335555 433321110 0113333333332222
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILL 709 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~ 709 (1043)
+.|+.+...-..+...|....+.. ....+.+..-.+|. .+....|...+.++.. |.-++ ..++-
T Consensus 1267 ---~kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a 1334 (1416)
T KOG3617|consen 1267 ---AKCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTLLEE-PILDDIIRCTRLFA 1334 (1416)
T ss_pred ---HHHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHH
Confidence 111111111111112222221111 01111111122222 2445555555555543 12221 56777
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 710 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 710 ~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
.|-..+....+|..|...++.+....|+-..
T Consensus 1335 ~lie~~v~~k~y~~AyRal~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1335 LLIEDHVSRKNYKPAYRALTELQKKVPNVDL 1365 (1416)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcCCccch
Confidence 8888888999999999999999888886533
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=120.06 Aligned_cols=222 Identities=19% Similarity=0.184 Sum_probs=194.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001618 294 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373 (1043)
Q Consensus 294 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 373 (1043)
|........++.++...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 445566778999999999999999999875 5677788999999999999999999888 7788899999988
Q ss_pred HH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhh
Q 001618 374 LL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 452 (1043)
Q Consensus 374 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 452 (1043)
+. ...-|++|.++.+ .. +..+...+|......++|.++..+|+..+.
T Consensus 466 v~~d~s~yEkawElsn-------~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~--------------------- 513 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSN-------YI----SARAQRSLALLILSNKDFSEADKHLERSLE--------------------- 513 (777)
T ss_pred hccChHHHHHHHHHhh-------hh----hHHHHHhhccccccchhHHHHHHHHHHHhh---------------------
Confidence 87 5444455544433 21 244556677777889999999999999988
Q ss_pred hHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhH
Q 001618 453 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 532 (1043)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 532 (1043)
++|....+||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++..+
T Consensus 514 ----------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 514 ----------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ----------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 5678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 533 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 533 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
|...+.++++.+-.+..+|-++..+..+.|.+++|++.+.+.+...
T Consensus 572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998754
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=7.9e-10 Score=130.30 Aligned_cols=150 Identities=13% Similarity=-0.001 Sum_probs=128.4
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~- 153 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS- 153 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-
Confidence 3334556788888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
...++.+|.++..+|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 67788899999999999999999999988888888899999999988888 888899999888876554443
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=5.6e-10 Score=105.76 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=108.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 104 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 104 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
..|++++..+|.+..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++...|++++|..+|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 67889999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 184 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 184 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
.++..++.+|.++...|+ +++|+..|++++..+|.+...
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEY 121 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchH
Confidence 999999999999999998 999999999999999987753
No 118
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.15 E-value=7.6e-06 Score=93.86 Aligned_cols=470 Identities=13% Similarity=0.019 Sum_probs=259.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.++|.+|...+.+.++..|+.+.+....|.++++.|++++|..+++..-...+++...+-.+-.+|..+|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35788999999999999999999999999999999999999988888877778888888889999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-HH------hHHHHHHHHHH
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-AA------GIRKGMEKMQR 214 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-~~------~~~~A~~~~~~ 214 (1043)
+++..+|. ....+.+-.+|.+.+.|.+=.++--+..+..|+++..+.....+.+..-. .+ -..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999999 46677788888888888776666666666788887665555444443221 00 12234445555
Q ss_pred HHHhC-CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001618 215 AFEIY-PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 292 (1043)
Q Consensus 215 al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 292 (1043)
.+... +-.. .-....-.++...|.+++|..++..-+... ..+.+...-......+...+++.+-.++..+++..
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--- 255 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--- 255 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---
Confidence 55544 2211 111222344556677777777774333211 11223333445555666677777777777777653
Q ss_pred CCCChhhHHH----H---------HHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 293 PHEFIFPYYG----L---------GQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAA 358 (1043)
Q Consensus 293 ~~~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l 358 (1043)
.++....+.. + +..+...+..+..++...+.+.....++. ++..+-.-+...|+.+++...|-+-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 2222111111 0 01111122222333333333322111221 22222222335567777666554433
Q ss_pred HhCCCC------------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH-----
Q 001618 359 KIDPRD------------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----- 419 (1043)
Q Consensus 359 ~~~p~~------------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 419 (1043)
..-|-. +.....+...+ ..++...+.+.+.+.+ ..-.+....|.+
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~----------------c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHL----------------CVLLLLRLLGLYEKLPA 399 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHH----------------HHHHHHHHhhccccCCh
Confidence 322211 11111111111 1111111111111111 111111112211
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCch---hHHHHhHHHHHHhcCC-
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK---VTVLFNLARLLEQIHD- 495 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~- 495 (1043)
+.-..++.+...... ..+++-..+. ..+..+.+ ..+...+..++.+.++
T Consensus 400 d~i~a~~~kl~~~ye-----------------------~gls~~K~ll----~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 400 DSILAYVRKLKLTYE-----------------------KGLSLSKDLL----PTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred HHHHHHHHHHHHHHh-----------------------cccccccccc----ccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 111111111111000 0000000000 00011111 1122334455666665
Q ss_pred --hHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 496 --TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 496 --~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
+-+|+.+++..+..+|.++.+...+..+|...|-+..|.+.|..+--.+-..-.+-+.+-..+...|.+..+...+..
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHH
Confidence 457889999999999999999999999999999999999998764322222222223334445566788888888888
Q ss_pred hhhcCCC
Q 001618 574 ASDATDG 580 (1043)
Q Consensus 574 ~l~~~~~ 580 (1043)
.+....+
T Consensus 533 ~lkfy~~ 539 (932)
T KOG2053|consen 533 HLKFYDS 539 (932)
T ss_pred HHHHHhh
Confidence 8776654
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=6.7e-10 Score=102.47 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.2
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001618 75 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 153 (1043)
Q Consensus 75 a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~ 153 (1043)
+..+. ++.-...+.+|..++..|++++|..+|+.+...+|.+...|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 67778899999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+++.+|.|++.+|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=6.4e-10 Score=111.69 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
+-..|.-++..++|.+|+..|.++|.++|.|+..+..+|.+|.++|.|..|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 34456777777777777777777777777777777777777777777777777777777777777 56677777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|++.+|+..|+++|.++|++..++..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777777777777666666655555444
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.12 E-value=2.2e-08 Score=103.71 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL---LGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 155 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~---~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~ 155 (1043)
..+..++..|..++..|+|++|+..|+.++...|..+.+. +.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4567788999999999999999999999999999886554 8999999999999999999999999999873 4567
Q ss_pred HhHHHHHHHcC
Q 001618 156 LGIGLCRYKLG 166 (1043)
Q Consensus 156 ~~lg~~~~~~g 166 (1043)
+.+|.|+..++
T Consensus 110 Y~~g~~~~~~~ 120 (243)
T PRK10866 110 YMRGLTNMALD 120 (243)
T ss_pred HHHHHhhhhcc
Confidence 77887765543
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.6e-06 Score=97.36 Aligned_cols=188 Identities=20% Similarity=0.160 Sum_probs=101.0
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHcCCChH
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARN--NLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~ 549 (1043)
.+..+.|.+|+.|...|++.+|+.+|.++-.. ...+ +..-.|+.+....+ +.-.|..+|+.. |.
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~d~v~aArYyEe~----g~--- 1036 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGSDLVSAARYYEEL----GG--- 1036 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCchhHHHHHHHHHHc----ch---
Confidence 46678899999999999999999999876432 1111 11122222222222 223344444432 10
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHh----------hhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHH
Q 001618 550 ALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 619 (1043)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 619 (1043)
-...-..+|.+.|.+.+|++..-.. -.+.+..|+..+..-+.. +... .+|++|..++
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF-F~~~------------~qyekAV~lL 1103 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF-FENN------------QQYEKAVNLL 1103 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHH
Confidence 1111223455566666665543221 124455677666666666 6666 7888888876
Q ss_pred HHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCC----CCCCchhHHHhHHHHHHHccCHHHHHHHHHHH
Q 001618 620 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS----VFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 695 (1043)
Q Consensus 620 ~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 695 (1043)
-.+-+.. + |.-++...+..-..++-+.+ .|.. +......++..+|.+..++|.|..|-+-|.+|
T Consensus 1104 ~~ar~~~--------~-AlqlC~~~nv~vtee~aE~m---Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1104 CLAREFS--------G-ALQLCKNRNVRVTEEFAELM---TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHH--------H-HHHHHhcCCCchhHHHHHhc---CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 5543221 1 11122222222222222222 1211 11123467888899999999999998888776
Q ss_pred HHH
Q 001618 696 LRK 698 (1043)
Q Consensus 696 l~~ 698 (1043)
=.+
T Consensus 1172 GdK 1174 (1416)
T KOG3617|consen 1172 GDK 1174 (1416)
T ss_pred hhH
Confidence 443
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=1.1e-09 Score=116.31 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 302 (1043)
+.+....|.+++..|++++|++++... ...+.......++...++++.|...+..+.+ ..++.....+.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa 170 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLA 170 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHH
Confidence 334444445555555555555544321 2334555555566666666666666655543 23344433444
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001618 303 LGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 379 (1043)
Q Consensus 303 la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 379 (1043)
.+.+.+..| .+.+|..+|+.+....+.++.++..++.++..+|++++|...+.+++..+|.++.++.+++.+. ..|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 444444444 4666666666655555555666666666666666666666666666666666666666666655 5555
Q ss_pred H
Q 001618 380 T 380 (1043)
Q Consensus 380 ~ 380 (1043)
.
T Consensus 251 ~ 251 (290)
T PF04733_consen 251 P 251 (290)
T ss_dssp T
T ss_pred C
Confidence 5
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=1.8e-09 Score=114.48 Aligned_cols=259 Identities=15% Similarity=0.118 Sum_probs=177.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
...++..|+|..++..++ ....+|. .......+.++++.+|++...+.-+... ..|.. .+...++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhH--HHHHHHHHHHhCccch
Confidence 456677899998887776 3333332 3456677888888889888766544331 13333 2233344444444456
Q ss_pred HHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 169 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
+.++..++..+.... .+....+..|.++...|+ +++|+..+.+. .+.........+|...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244556666677777777 88888877653 56777778888999999999999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 324 (1043)
..+.+.. .+...+....+.+....| .+.+|..+|+.... ..+..+..+..++.+++.+|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877542 233333333344444455 69999999999875 445677888999999999999999999999999
Q ss_pred HHCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001618 325 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 367 (1043)
Q Consensus 325 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~ 367 (1043)
..+|++++++.+++.+....|+. +.+.+++.++...+|.++.+
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999998 66777888888889987754
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=9.4e-09 Score=109.96 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
|.-..++++.|..++..|.++.|+..++.++...|++ +.++-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 6677788888888888888888888888888888877 666777788888888888888888888888888877788888
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc
Q 001618 194 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273 (1043)
Q Consensus 194 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 273 (1043)
..++..|+ +.+|+..++..+..+|+++..|..|+..|..+|+..++. ...+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~--------------------~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL--------------------LARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH--------------------HHHHHHHHhC
Confidence 88888887 778888888888888888888888888888888765433 3445667777
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001618 274 GDYEKAGLYYMASVKEI 290 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~ 290 (1043)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 88888888888887754
No 126
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.3e-08 Score=102.92 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-----cHHHH
Q 001618 333 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-----PIEVL 406 (1043)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~ 406 (1043)
+.......|.++.+...+..-.+.++....+.+.+.+..+..+ ..|++..|.+.+... .+....+... ....+
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheee
Confidence 3333444556666777777777777777777888888888887 899999988876532 1211112111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHh
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 485 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1043)
+++|+++++.|.|.-+..+|.+++. .|..... + +.....-.-.......++|+
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHh
Confidence 8999999999999999999999995 3321110 0 00000000023356789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Q 001618 486 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 527 (1043)
Q Consensus 486 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 527 (1043)
.|..|...|++-.|.++|.+++...-.++..|++++.++...
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=6.4e-09 Score=122.73 Aligned_cols=148 Identities=9% Similarity=-0.038 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 102 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
++.-+.......|.++.+++.+|.+....|.+++|+.+++.++.+.|++ ..++..++.++.+++++++|+..+++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3444444456678899999999999999999999999999999999999 788999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001618 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 253 (1043)
Q Consensus 182 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 253 (1043)
+|++..+++.+|.++...|+ +++|+..|++++..+|+++.++..+|..+...|+.++|...|.+++...
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQ---SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999999999999999999999999999999999999999999998764
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=1.7e-08 Score=102.28 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=115.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~ 156 (1043)
.+..++..|..++..|+|.+|+..|+.++...|.. +.+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678888999999999999999999999888765 56788899999999999999999999999988873 45677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.+|.+++.+..-. + ....+.....+|+..|+..+...|++..+-.
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 7777766542111 0 0011112255666666666666666542211
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
|...+..+.. ....--+.+|..|.+.|.|..|+..++.+++.++..+....++..++.++..+|..+.|
T Consensus 129 -----A~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1111111110 11133445666677777777777777777776666555566677777777777766643
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=7.8e-08 Score=103.10 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=88.7
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..|+ ..+|.+.+++++.++|..+.+...+|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666 666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.|+..|++.+|+..++..+.. .|.++..|..|+.+|..+|+..+|... .+..+...|
T Consensus 383 all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGYALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHHHhCC
Confidence 666666666666666655533 345556666666666666655444322 233444555
Q ss_pred CHHHHHHHHHHHHHHC
Q 001618 312 DFRSALTNFEKVLEIY 327 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~ 327 (1043)
+++.|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666665555543
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.5e-09 Score=106.45 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.+.++|.+|+..|++|+.++|.++..|..++.+|.+.|.|+.|++-++.++.++|....+|..+|.+|+.+|+|.+|+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLG 169 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~ 169 (1043)
|+++|.++|++ ..++-.|..+-..++...
T Consensus 172 ykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 99999999999 566666666655555444
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=8.2e-09 Score=95.36 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 110 LEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 110 l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
.... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3445 6677888999999999999999999999999999999 7779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 189 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
++.+|.+++..|+ ...|...|+.++...
T Consensus 106 ~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 9999999999998 889999999888776
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.01 E-value=9.2e-08 Score=99.08 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHH
Q 001618 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 189 (1043)
Q Consensus 115 ~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 189 (1043)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577788999999999999999999999999999883 22358899999999999999999999999999864 567
Q ss_pred HHHHHHHHHhh---------------hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 190 VALAVMDLQAN---------------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 190 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
+.+|.++...+ +.....+|+..|+..+...|+...+-. |...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~--------------A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD--------------ATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH--------------HHHHHHHHHH---
Confidence 78887654433 223356788888888888887753211 1111111100
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 255 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 255 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
....--+..|..|.+.|.|..|+.-++.++..++..+....+++.++.+|...|..++|.....
T Consensus 173 ---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 ---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0012233455566666666666666666666555555555566666666666666666555443
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=4.2e-08 Score=99.36 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=115.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
.+..++..|..+...|++.+|+..|+.++...|.. ..+.+.+|.++...|++..|+..++..+...|.++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 34555566666666666666666666666655542 4555556666666666666666666666665555431
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
.++++.+|.+ ++....... ......+...+|+..|+.++...|++.++.
T Consensus 79 ---------------------------~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 79 ---------------------------DYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp ---------------------------HHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred ---------------------------hhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 1233333333 222211110 000111678899999999999999876543
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 714 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~ 714 (1043)
+|...+..+.+.. ...-+.+|..|++.|.|..|+..|+.+++.||+++. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~l--------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNRL--------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 3444444444432 345667899999999999999999999999987766 7899999999
Q ss_pred HHhhhcHHHHH
Q 001618 715 HYEAEQWQDCK 725 (1043)
Q Consensus 715 ~~~~g~~~~A~ 725 (1043)
+.+.|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 99999988543
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.01 E-value=6.6e-09 Score=114.71 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
+...|..++..|+|+.|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877765444
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=5.3e-05 Score=82.20 Aligned_cols=415 Identities=12% Similarity=0.038 Sum_probs=214.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001618 73 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 152 (1043)
Q Consensus 73 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~ 152 (1043)
++-++.+|.+..+|+.+..-+-.+ .+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998877666 99999999999999999999999999999999999999999999998765443 2
Q ss_pred HHHHhHHHHHHHcCCHHHHHHH----HHHHHh---hCCCcHHHHHHHHHHHHHhhhH------HhHHHHHHHHHHHHHhC
Q 001618 153 AIRLGIGLCRYKLGQLGKARQA----FQRALQ---LDPENVEALVALAVMDLQANEA------AGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~~~----~~~al~---~~p~~~~a~~~la~~~~~~~~~------~~~~~A~~~~~~al~~~ 219 (1043)
.....+-.+....|....+... |+-++. .++.....|...+..+..-... ..++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2223344444444544443332 333322 3455555555555443321111 11344444555554433
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCC
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHE 295 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~ 295 (1043)
-.+..-+. .+|..-+.-.+.+. ..-.+--....|..|...+++...... ..+.
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221110 11111111111111 011111222334455555544433111 0010
Q ss_pred ChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHH
Q 001618 296 FIFPYYGLGQVQLKLGDF--RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAAKIDPRDAQAFIDL 371 (1043)
Q Consensus 296 ~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l 371 (1043)
... .|-- -.+++.+...++....|+--. ..|. -....-.|++++..-+-.+.+|+..
T Consensus 225 vp~-----------~~T~~e~~qv~~W~n~I~wEksNpL~t--------~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~ 285 (656)
T KOG1914|consen 225 VPP-----------KGTKDEIQQVELWKNWIKWEKSNPLRT--------LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDY 285 (656)
T ss_pred CCC-----------CCChHHHHHHHHHHHHHHHHhcCCccc--------ccccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000 0000 011122222222111110000 0000 0011122333333334444444443
Q ss_pred HHHH--------hcCC-------HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHcch
Q 001618 372 GELL--------ISSD-------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF---EKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 372 a~~~--------~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 433 (1043)
+..+ ..|+ ..++..+|+.++...... ...+++.++..-- ..+.++....++.+++..
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~- 360 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI- 360 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-
Confidence 3332 2222 344555555555432221 1112222211111 111233344444444432
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
...+..-++.++...-.+..-...|..+|.++-+..-..
T Consensus 361 -----------------------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 361 -----------------------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred -----------------------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 111222344555555555566778888888887644333
Q ss_pred HHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 514 VDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 514 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
..++..-|.+ |...++..-|..+|+-.+...++.+..-..+...+...++-..+...|++++..
T Consensus 400 hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 400 HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 3444444443 446788899999999999999999998888888899999999999999998876
No 136
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=8.3e-05 Score=79.50 Aligned_cols=421 Identities=14% Similarity=0.105 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhC---CCc----
Q 001618 118 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 185 (1043)
Q Consensus 118 ~a~~~la~~~~~~g--~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 185 (1043)
.+++++|..+...| +...++++++..+...|... +..++.+|.+++ ...+++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666676666666 67777777777776666552 233455555544 3567777777777776543 222
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH
Q 001618 186 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261 (1043)
Q Consensus 186 ~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 261 (1043)
..+...|+.+|....+ .+..+...+++++++....+ ...+.|+.++....++..|..++..-.... ++ ...
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA--d~-~~~ 162 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA--DH-ICF 162 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc--ch-hhh
Confidence 2345556666665542 25666667777776655444 223344444444455544444422111000 00 000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH--HHHHHHHcC---CHHHHHHHHHHHHHHCCCcH-----
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG--LGQVQLKLG---DFRSALTNFEKVLEIYPDNC----- 331 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--la~~~~~~g---~~~~A~~~~~~~l~~~p~~~----- 331 (1043)
.|+ ...+. .+.++.... +...+...+..+......++
T Consensus 163 ~yl---------------------------------r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~ 209 (629)
T KOG2300|consen 163 PYL---------------------------------RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEM 209 (629)
T ss_pred HHH---------------------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHH
Confidence 000 11111 112222222 22233333333333221111
Q ss_pred --HHHHHHHHHH-HHcCCHHHHHHHHHHHHHh----CC----------------------C-CHHHHHHHHHHH---hcC
Q 001618 332 --ETLKALGHIY-VQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISS 378 (1043)
Q Consensus 332 --~~~~~la~~~-~~~g~~~~A~~~~~~~l~~----~p----------------------~-~~~~~~~la~~~---~~~ 378 (1043)
..+..+-.+| ...|+...+...++++-.. .+ + ...++..+..+. ..|
T Consensus 210 LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~g 289 (629)
T KOG2300|consen 210 LKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAG 289 (629)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhH
Confidence 1223333333 3446666665555544221 11 0 112222222222 345
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCC-c--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 449 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (1043)
-++++.++-++++....+..... . ...+-++..+-.-.|++.+|++....+.+.|.....
T Consensus 290 y~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~----------- 358 (629)
T KOG2300|consen 290 YFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT----------- 358 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc-----------
Confidence 67778887777777655543222 1 244556777888899999999998887764421000
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC-c--HHHHHHHHHHHHH
Q 001618 450 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKA 526 (1043)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~ 526 (1043)
..+ .....+.+.+.+|......+.++.|...|..+.+.... + ..+-.+++.+|..
T Consensus 359 ----------~~L------------lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 359 ----------PLL------------LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred ----------hHH------------HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence 000 11235667788888888999999999999998875432 2 4456678888999
Q ss_pred cCChhHHHHHHHHHHHHcCCC----------hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH-----HHHHhhh
Q 001618 527 RNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGN 591 (1043)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----~~~~lg~ 591 (1043)
.++.+.-.+.++ .+.|.+ ..+++..|.+.+.++++.+|...+.+.++.....+.. .+..||.
T Consensus 417 ~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 417 IGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred hccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 887655444443 344543 2367788888899999999999999999987554443 3445566
Q ss_pred HHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 592 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 592 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
+ +... |+..++......++..
T Consensus 494 v-~lsl------------gn~~es~nmvrpamql 514 (629)
T KOG2300|consen 494 V-FLSL------------GNTVESRNMVRPAMQL 514 (629)
T ss_pred H-HHHh------------cchHHHHhccchHHHH
Confidence 6 5555 7777777766666543
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=2.3e-05 Score=87.05 Aligned_cols=326 Identities=12% Similarity=0.102 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPA 119 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------------~~p~~~~a 119 (1043)
..+++|+.|...++. +...|.....|..++.+.+..|++--|..+|..+-. ...+-...
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 456889999887765 567788888899988888888887777666643211 12233445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
+...|.+.+...+|.+|..+|-. .+... . ..-.|..+.++++|+..-+-. -.|.........-..+...
T Consensus 534 ykvra~lail~kkfk~ae~ifle---qn~te--~----aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEAEMIFLE---QNATE--E----AIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHh---cccHH--H----HHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 55666666666777777666532 12111 1 112345556666666543311 1222111111111122222
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---------CCCchHHHHHHHHHH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLARSY 270 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~~~~la~~~ 270 (1043)
|+ -.+|- ++...+... .....+|...|....|......--..... .-...+.|-.-|.+|
T Consensus 603 ~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 603 GQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred Cc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 22 11111 111111111 11223444555544443332111000000 001123444455566
Q ss_pred HHcCCHHHHHHHHHHHHH--------hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 001618 271 HSKGDYEKAGLYYMASVK--------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 342 (1043)
Q Consensus 271 ~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 342 (1043)
.+..++++|+++|.+.-. .+.-+...+..--..|.-+...|+++.|+..|-.+- .+........
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai 743 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAI 743 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 666666677666654321 011111122223345566666777777776665431 1122223334
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHH
Q 001618 343 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421 (1043)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 421 (1043)
....+.+|+.++..+-... .....|-.++.-| ..|+++.|..+|.++- .......+|-+.|++..
T Consensus 744 ~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHHH
Confidence 4456666666665543221 1223344456666 6677776666654432 22333455666777777
Q ss_pred HHHHHHHHH
Q 001618 422 AHQSFKDAL 430 (1043)
Q Consensus 422 A~~~~~~al 430 (1043)
|..+-.+..
T Consensus 810 a~kla~e~~ 818 (1636)
T KOG3616|consen 810 AFKLAEECH 818 (1636)
T ss_pred HHHHHHHhc
Confidence 766665544
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=0.0001 Score=82.10 Aligned_cols=227 Identities=19% Similarity=0.194 Sum_probs=124.8
Q ss_pred HHHHcCChHHHHHHHHH------HHHh----CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 126 VEFNRGRYSDSLEFYKR------ALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 126 ~~~~~g~~~~Al~~~~~------~l~~----~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
++-+..++++|+++|++ ++++ .|......--..|.-+...|+++.|+..|-.+-.+ ..-...
T Consensus 670 lfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kaiea 741 (1636)
T KOG3616|consen 670 LFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAIEA 741 (1636)
T ss_pred HHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHHHH
Confidence 33444455566655543 2222 23332233334566777778888887777554211 111111
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCC
Q 001618 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 275 (1043)
Q Consensus 196 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 275 (1043)
...... +.+|+..+...-... .....+-.++..|...|+|+.|..+|..+- .+..-...|.+.|+
T Consensus 742 ai~ake---w~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 742 AIGAKE---WKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred Hhhhhh---hhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhcccc
Confidence 122222 667776666543322 223345567788888888888888876542 23334456777788
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+.+|..+-.+.. .+......|...+.-+-..|+|.+|..+|-.+- .|+ ....+|-+.|.++..+.+..
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~------~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPD------KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--Cch------HHHHHHHhhCcchHHHHHHH
Confidence 888877776665 344555566667777777788877776653321 121 12234555555555555444
Q ss_pred HHHHhCCCC-HHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 356 KAAKIDPRD-AQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 356 ~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
+ ..|+. ...+..++.-+ ..|+...|...|-++
T Consensus 875 k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 875 K---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred H---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3 22332 34555666666 667776666655444
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.4e-08 Score=92.11 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHh
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 157 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~ 157 (1043)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+.+|+.++...|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 56889999999999999999999999999988852 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 190 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 190 (1043)
+|.++..+|++++|...|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.90 E-value=3.8e-07 Score=93.18 Aligned_cols=306 Identities=15% Similarity=0.096 Sum_probs=195.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCCCChhhHHHHHHHH
Q 001618 231 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~ 307 (1043)
.-++...++.+++....+.+............+-.+..+...+|.|++++.+--..+... ........++.+++..+
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444332222333444455666667777777665543333211 12222345677788888
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL- 375 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~- 375 (1043)
...-++.+++.+....+...... ..+...++.++.-++.++++++.|+++++...++ ..++..|+.++
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 88888888888777766543222 2566778888888888888998888888764322 35677888888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKAGE-EVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 450 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (1043)
...|+++|+-+..++..+....+- ... ..+++.++..+...|..-.|.++.+++.++....
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~-------------- 239 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH-------------- 239 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--------------
Confidence 888899998888888888777542 222 4677889999999999999999999998753100
Q ss_pred hhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC------cHHHHHHHHHHH
Q 001618 451 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIA 524 (1043)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~ 524 (1043)
...+.....+..+|.+|...|+.+.|..-|+.+...... .+.++...+.++
T Consensus 240 -----------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 240 -----------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred -----------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 123446677888999999999999999999998864422 133444444443
Q ss_pred HHcCC-----hhHHHHHHHHHHHHcCCC------hHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 525 KARNN-----LQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 525 ~~~g~-----~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
....- .-.|+++-.+++++...- ...+..++.+|...|.-++-...+..
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 32222 233666666666654321 23556677777666665555555444
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.2e-07 Score=89.85 Aligned_cols=105 Identities=30% Similarity=0.332 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 36 ~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
+|..+++.-|.+|=.+|-.. -|..-|.+++.+.|..+.++..+|..+...|+|+.|.+.|+.++..+|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56666666666666666544 7778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+..+.+..|..++--|+|.-|...+.+..+.+|++|
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 888888888888888888888888888888888873
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=0.00019 Score=78.05 Aligned_cols=189 Identities=14% Similarity=0.174 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHcCCChH-HHHHHHHHhhhccchHHHHHH
Q 001618 496 TVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 570 (1043)
Q Consensus 496 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 570 (1043)
..++..+|+.++..- ..+...++.++..-...- ..+.....+++++.....++. ++..+.+.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 667777888777532 233444555544332222 366677788888887655544 566666666666778899999
Q ss_pred HHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHH
Q 001618 571 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 649 (1043)
Q Consensus 571 ~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A 649 (1043)
|.++-+..-. +..+...++.. |+.. ++..-|..+|+--++..++.+...+.....+.+.++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999875433 35555544443 4555 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 650 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 650 ~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
..+|++++...- + ......+|..+-..-..-|+...++++=++....|+
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999998720 0 013457788777777778888888888777777665
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=4e-08 Score=108.52 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
+...|..++..|+|..|+.+|.+++..+|.+ ..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666443
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.3e-08 Score=97.73 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHcchhhhh----h-----------hhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 39 AILNALGVYYTYLGKIETK----Q-----------REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 103 (1043)
Q Consensus 39 ~~l~~La~~y~~~g~~~~~----~-----------~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 103 (1043)
-+...++..|+.+|.+... + ...+...+.-+.-++.-+..+|+++..|..+|.+|+..|++..|.
T Consensus 97 ~~~~v~~~~y~~~g~y~~vg~~~q~~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~ 176 (287)
T COG4235 97 ALVAVLALSYLLLGLYQAVGAPEQPADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDAL 176 (287)
T ss_pred HHHHHHHHHHHHhhhhhhcCCccccchhhhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHH
Confidence 3455566677777665421 1 011233556677777788889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 104 SAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 104 ~~~~~~l~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
..|.+++++.|+|+..+..+|.+++... ...++..+|++++..+|.+ ..+++.+|..++..|++.+|...|+.++.
T Consensus 177 ~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 177 LAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999988888887654 4568888899999999988 66788889999999999999999999988
Q ss_pred hCCCcHH
Q 001618 181 LDPENVE 187 (1043)
Q Consensus 181 ~~p~~~~ 187 (1043)
..|.+..
T Consensus 256 ~lp~~~~ 262 (287)
T COG4235 256 LLPADDP 262 (287)
T ss_pred cCCCCCc
Confidence 8876543
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=1.2e-07 Score=90.02 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
+..++.+|..|-..|-+.-|..-|.+++.+.|.-+.++..+|.-+...|+|+.|.+.|+.+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45677889999999999999999999999999999999999999999999999999999999999999 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM-QRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+--|++..|..-|.+-.+.+|+++---..|-......+ ..+|..-+ +++...+.. ...|+... +..|+..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS- 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKIS- 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhcc-
Confidence 99999999999999999999998754333332222222 45555433 444333322 11222111 1112211
Q ss_pred HHHHHHHHHhhcCCC----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
...++.++......+ ....++++.+|..+...|+.++|...|.-++.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122223332221111 11235677777777777777777777776664
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=1.6e-07 Score=92.67 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=101.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
+|....+++.+|..+...|++++|+.+|++++...|+. ..+++.+|.++...|++++|+..|.+++...|.. ...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence 34566788999999999999999999999999877653 4689999999999999999999999999999998 6678
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
..+|.++...|+...+...+..++.. +.+|+.++.+++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 88999999999987777666655432 677888888888888876
No 147
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.78 E-value=2.5e-06 Score=87.33 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCCChh
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIF 298 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~ 298 (1043)
.++.+++..+...-++.+++.+....+..+...+ .-......++.++..++.|+++++.|+.+++.... ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 4556666666666777777777776665544433 22356677888888999999999999988863322 222345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----N------CETLKALGHIYVQLGQIEKAQELLRKAAKID------P 362 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p 362 (1043)
++..+|.++....++++|+-+..++..+... + .-+++.++..+..+|..-.|.++.+++.++. +
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6788899999999999999888888775321 1 2456778888888899999999998887753 3
Q ss_pred CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 363 RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 363 ~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
........++.+| ..|+.+.|..-|+.+.......++
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 3456677788899 889999999999888887655443
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=1.1e-07 Score=88.25 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.3
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 001618 75 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 154 (1043)
Q Consensus 75 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~ 154 (1043)
+..+.+..-...+..|.-++..|++++|..+|.-+...+|.++..|+++|.++..+++|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455556667889999999999999999999999999999999999999999999999999999999999999988 667
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 155 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 89999999999999999999999997 4543
No 149
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=3.6e-06 Score=100.23 Aligned_cols=234 Identities=16% Similarity=0.184 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCc----HHHHHHHHHHHHHhhhHHhHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPEN----VEALVALAVMDLQANEAAGIRK 207 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~~~~~~~~~ 207 (1043)
-.+....|.+.+..+|+. ...|+.+...+..+++.+.|+..+++||.. ++.. ...|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788899999998 778888888889999999999999999974 4432 2344444444444444 566
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 208 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
....|+++.+... ...++..|..+|...+.+++|.++++.+++... .....|..++..++.+++-+.|..++.+++
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6778888877653 345788899999999999999999999998764 445789999999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDA 365 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 365 (1043)
..++. ..........|++-++.|+.+.+..+|+-.+..+|.-.++|..+...-.+.|+...+..+|++++.+. |...
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87655 44666777889999999999999999999999999999999999999999999999999999998764 4445
Q ss_pred HHHHHHHHHH
Q 001618 366 QAFIDLGELL 375 (1043)
Q Consensus 366 ~~~~~la~~~ 375 (1043)
..++..-.-|
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.75 E-value=1e-07 Score=83.67 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
+++.+|.+++..|++++|+..|..++...|.+..+++.+|.++...|++++|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888888877 4667788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001618 165 LGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p 183 (1043)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-07 Score=93.89 Aligned_cols=121 Identities=21% Similarity=0.155 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
.+.-+.-++..+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|.++....+.....++...|
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 556666778888899999 6678899999999999999999999999999999999999998888877656678899999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 213 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 213 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
++++..+|.+..+++.||..++..|+|.+|...++.++...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999887643
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.74 E-value=2.6e-07 Score=85.20 Aligned_cols=108 Identities=29% Similarity=0.358 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 337 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 337 (1043)
..++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667777778888888888888887776544434445667778888888888888888888888777664 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001618 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 368 (1043)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 368 (1043)
|.++...|++++|+.++.+++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888877776543
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.74 E-value=3.8e-08 Score=80.32 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~~l~~~p 148 (1043)
++.+|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 56666666666666655
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=98.72 E-value=7.6e-07 Score=96.45 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=114.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001618 87 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 87 ~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777776664 567889999999 88999999999999988765 23567888888999999998
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
+.++..+|.+++..++++.|...|++++.++|+...+++..|.+..-.|+ .++|+..++++++++|....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHH
Confidence 77788899999999999999999999999999999999999999988888 899999999999999876533
No 155
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=1.6e-07 Score=94.50 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=99.7
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 711 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 711 (1043)
.+..|.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|..|...|..+++.||.++- |..++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667778888999999999999999999998875 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 712 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 712 a~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
|.+....|+.++|..+|+++++.+|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999998776
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=7.1e-06 Score=81.18 Aligned_cols=195 Identities=14% Similarity=0.163 Sum_probs=136.8
Q ss_pred HHHhHHHHHHhcCChHHHH-HHHHHHHHhCcCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 482 VLFNLARLLEQIHDTVAAS-VLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
+...++..+..-++.+.-+ ..++.+....... ......-+.++...+++++|...+.. ..+.++...-..+++
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHH
Confidence 3334445444444444444 3344444333333 34455556778888899999887776 334566667777888
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
++.+++-|...++++.+... -..+..|+.. |...+... +.+..|.-+|+.+-...|..+...++.+.+
T Consensus 149 k~~r~d~A~~~lk~mq~ide---d~tLtQLA~a-wv~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDE---DATLTQLAQA-WVKLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHccch---HHHHHHHHHH-HHHHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 88888889888888877643 3455557777 76664432 568888888888888888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+..+|++++|..+++.++...+ .+|+++.|+..+-...|...++..-+-.-++.
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888877 67888888888888888887777665554544
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=4.3e-07 Score=89.36 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 001618 65 FILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
|..+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455555554444443 4566777888888888888888888887775542 34777788888888888888888
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
|.+++...|.. ...+..+|.++..+|
T Consensus 95 ~~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 88888877777 455667777777444
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.70 E-value=3.6e-08 Score=84.00 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHH
Q 001618 96 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 173 (1043)
Q Consensus 96 ~g~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 173 (1043)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777777664 344556667777777777777777766 5555555 4445556777777777777777
Q ss_pred HHHHH
Q 001618 174 AFQRA 178 (1043)
Q Consensus 174 ~~~~a 178 (1043)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
No 159
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.69 E-value=8.5e-06 Score=81.37 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=70.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~ 156 (1043)
.+..|+..|...++.|+|.+|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999998875 46889999999999999999999999999999873 44555
Q ss_pred hHHHHHH
Q 001618 157 GIGLCRY 163 (1043)
Q Consensus 157 ~lg~~~~ 163 (1043)
..|.+++
T Consensus 113 lkgLs~~ 119 (254)
T COG4105 113 LKGLSYF 119 (254)
T ss_pred HHHHHHh
Confidence 6666644
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=7e-07 Score=85.21 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001618 67 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555666666666666 4556666777777777777777777777666543 345666777777777777777777
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
+.+ . .+...+.++..+|.++...|++++|+..|++++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 552 1 122234556667777777777777777776653
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=2.3e-07 Score=96.68 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=97.0
Q ss_pred cHHHHHHhHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HH
Q 001618 629 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 706 (1043)
Q Consensus 629 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 706 (1043)
+....+..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++.+|+..|+.+++.||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 344555555554 5679999999999999999996643 3689999999999999999999999999999987665 99
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
+++.+|.++...|+++.|+.+|+++++.+|++..+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999998754
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.69 E-value=6.8e-08 Score=78.83 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 183 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 183 (1043)
++.+|..+|.+++..|+|++|+..|.+++..+|++ ..+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777 566777777777777 57777777777777766
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=5.3e-07 Score=93.95 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=90.7
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHh
Q 001618 84 STWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 157 (1043)
Q Consensus 84 ~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~~ 157 (1043)
..++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5677777766 56789999999999999999987 5789999999999999999999999999888875 3667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 89999999999999999999999999876543
No 164
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=8.7e-07 Score=84.57 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHhHHHHHHHcCCH
Q 001618 94 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 94 ~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~~lg~~~~~~g~~ 168 (1043)
+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36788888988999999999988 5677889999999999999999999999987654 345678899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001618 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 216 (1043)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3334455667778888888887 778887777653
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.66 E-value=1.7e-06 Score=93.76 Aligned_cols=148 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001618 64 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 64 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 131 (1043)
....|+.+|.+++ ..+|..+.++-.++.+++.. ....+|....++++..+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999 99999999999999888765 24568889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH-HHHH-HHHHhhhHHhHHHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV-ALAV-MDLQANEAAGIRKGM 209 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~-~~~~~~~~~~~~~A~ 209 (1043)
+++.|+..|++++.++|+. +.+++..|......|+.++|...++++++++|....+-. .+.. +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 788999999999999999999999999999997655433 2222 444443 67777
Q ss_pred HHHHHHH
Q 001618 210 EKMQRAF 216 (1043)
Q Consensus 210 ~~~~~al 216 (1043)
.+|-+--
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7665543
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.3e-05 Score=77.63 Aligned_cols=253 Identities=14% Similarity=0.060 Sum_probs=158.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Q 001618 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347 (1043)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 347 (1043)
+-++-.|+|..++..-.+... .+........+...|+..|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 334455666666655544432 22334445556666777776655444332221 11233444455555545555
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 348 EKAQELLRKAAKI-DPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 348 ~~A~~~~~~~l~~-~p~~~~~~~~l-a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
+.-+.-+.+.+.. .......+..+ +.++ ..+++++|+........ .++...-..++.++.+++-|..
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443332 22222233333 3455 78888888877665322 3444444567778888888888
Q ss_pred HHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHh----cCChHHHH
Q 001618 425 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAAS 500 (1043)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 500 (1043)
.++++.+. +.-.++.+||..+.. .+.+..|.
T Consensus 159 ~lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 159 ELKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88888763 223344445444432 34678888
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHH-HHHHhhhcCC
Q 001618 501 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE-TFRAASDATD 579 (1043)
Q Consensus 501 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~~ 579 (1043)
-+|+.+-...|..+......+.++..++++++|..+++.++..++++|+++.++..+-...|...++.. .+.+....+|
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 899998887888888999999999999999999999999999999999999999988888888765544 4444545555
Q ss_pred CCC
Q 001618 580 GKD 582 (1043)
Q Consensus 580 ~~~ 582 (1043)
.+.
T Consensus 274 ~h~ 276 (299)
T KOG3081|consen 274 EHP 276 (299)
T ss_pred cch
Confidence 543
No 167
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=7.7e-05 Score=79.67 Aligned_cols=277 Identities=13% Similarity=0.110 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 127 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~--~---~p----------~~~~a~~~la~~~ 127 (1043)
.|+.-.+++..+-.++-.+..+++..+.+ |+..|.+.- ...++.... . .| ++....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 45556666666655555554444555544 444444322 222222211 1 11 2345667778888
Q ss_pred HHcCChHHHHHHHHHHHHhCC----CChhHHHHhHHHHHHHcCCHHHHHHHHHHH---Hhh---CC--CcH---------
Q 001618 128 FNRGRYSDSLEFYKRALQVHP----SCPGAIRLGIGLCRYKLGQLGKARQAFQRA---LQL---DP--ENV--------- 186 (1043)
Q Consensus 128 ~~~g~~~~Al~~~~~~l~~~p----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~---~p--~~~--------- 186 (1043)
+....|..|+.........-. .....+-+..-..+.....-++|+.++.-. +.. .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 888888888877665544321 111222233333344444455555443222 111 00 000
Q ss_pred ----------------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 187 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 187 ----------------~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
.+...-...++...+ ..-+..-...+.....+.+.++...+..++..|+|.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122222222 4444444555555666788899999999999999999999886543
Q ss_pred hhc-CC---CCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------C-------CCCCChhhHHHHHHHHHH
Q 001618 251 AVT-NH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--------N-------KPHEFIFPYYGLGQVQLK 309 (1043)
Q Consensus 251 ~~~-~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~-------~~~~~~~~~~~la~~~~~ 309 (1043)
-.. .. .|. ....|.++|.+++..|.|.-+..+|.++++.. . .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 111 00 111 23456889999999999999999999998511 0 112334568899999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 310 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 310 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
.|++-.|.++|.++...+-.+|..|..++.++...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999989999999999988743
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.64 E-value=9.7e-06 Score=80.99 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=139.3
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHH---H
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 551 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 551 (1043)
..+..+++-|...+..|++.+|+..|+.+...+|.. ..+.+.++.++.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356678888888888888888888888888877754 4567777777888888888888888888888777653 2
Q ss_pred HHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH
Q 001618 552 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631 (1043)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 631 (1043)
+..|.+ ++..+....++ ......|+..|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 233322 11111111111 14566788889999999999877
Q ss_pred HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHH
Q 001618 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 710 (1043)
Q Consensus 632 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~ 710 (1043)
+-.... -+..+.... ...=..+|..|.+.|.+..|+.-++.+++.++..+. ...+..
T Consensus 152 a~dA~~--------------~i~~~~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKA--------------RIVKLNDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHH--------------HHHHHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 654322 222222211 223346788999999999999999999999876665 788899
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHhCCCCc
Q 001618 711 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 739 (1043)
Q Consensus 711 la~~~~~~g~~~~A~~~~~ka~~~~P~~~ 739 (1043)
+..+|+..|-.++|.+.-.-+-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999877665555556665
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=1.6e-06 Score=99.63 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=115.4
Q ss_pred cCCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 001618 78 IDMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRAL 144 (1043)
Q Consensus 78 ~~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~~l 144 (1043)
.-|.++.+ ++..|..++..+. +..|+.+|++++..+|++..++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555544 4567888877655 889999999999999999999998888776543 2345555566655
Q ss_pred Hh--CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 145 QV--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 145 ~~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
.. +|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|..
T Consensus 412 al~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 412 ALPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hcccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC
Confidence 54 5555 46788888888899999999999999999999 57899999999999999 999999999999999998
Q ss_pred HH
Q 001618 223 AM 224 (1043)
Q Consensus 223 ~~ 224 (1043)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 85
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.64 E-value=9.9e-08 Score=76.72 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
No 171
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=1e-05 Score=96.59 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 207 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYM 284 (1043)
Q Consensus 207 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 284 (1043)
+....|.+.+..+|+....|......+...++.+.|.+++++++...+... .....|..+-.....-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344567777777888888887777777888888888888888876543222 123345555555555566667777777
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 001618 285 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR- 363 (1043)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~- 363 (1043)
++.+. -+...++..|..+|...+++++|.++|+.+++.......+|..++..+++.++-+.|..++.++++.-|.
T Consensus 1522 RAcqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 77752 2334567778888888888888888888888877777788888888888888888888888888887777
Q ss_pred -CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 364 -DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 364 -~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
+.......+.+- ..|+.+.+..+|+..+...|+ ..++|+.+...-...|+..-+..+|++++.+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 566666667766 788888888888877776655 3567777777778888888888888888774
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=5.5e-08 Score=82.86 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ +..+|.++...+.+|.+++.+|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5788999999999999995 466788899999999999999999999 8888888899999999999999999999999
Q ss_pred HHH
Q 001618 141 KRA 143 (1043)
Q Consensus 141 ~~~ 143 (1043)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.61 E-value=9.7e-07 Score=87.12 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Q 001618 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 336 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 336 (1043)
+....+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+..+.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34456677888888888888888888888876433333345677888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCCCC
Q 001618 337 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 364 (1043)
Q Consensus 337 la~~~~~~g~~--------------~~A~~~~~~~l~~~p~~ 364 (1043)
+|.++...|+. .+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888877763 44555555555555544
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.8e-07 Score=94.77 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=87.8
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhh-hhc-----cHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHH
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 75 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~-~~~-----~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 75 (1043)
+..||+.|+|..|....++++..=...+ +++ ...-++.++.+|+.+|+.+..+. .|+..++++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~~c~kv 283 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIESCNKV 283 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHHHHHHH
Confidence 4689999999999999888754210000 000 11233455666666666665333 777777777
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCC
Q 001618 76 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHP 148 (1043)
Q Consensus 76 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~~l~~~p 148 (1043)
|..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .+.|..++..-+
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777777777777777777777777777777777777777776666666666655554443 566666665543
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-06 Score=92.69 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRD---------------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.-..|..|++.|+|..|...|++++..-+. -..+++.+|.|+.+++.|..|+..+.++|..+|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345688999999999999999998775321 12456667777777777777777777777777777
Q ss_pred hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
.-++|..|.++..+|+++.|+..|+++++++|+|..+...|..+..+... ........|.+++..-
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55567777777777777777777777777777777666666665555433 1223345555555443
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=6.6e-07 Score=78.31 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|++++|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677777888888888888888888887777 46677788888888888888888888888888777777778877777
Q ss_pred hhhHHhHHHHHHHHHHHHHhCC
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p 220 (1043)
.|+ +..|...+..++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7777777777776665
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.58 E-value=1.6e-06 Score=93.09 Aligned_cols=209 Identities=14% Similarity=0.088 Sum_probs=135.7
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhh
Q 001618 371 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 448 (1043)
Q Consensus 371 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (1043)
.|.+| ..+++++|...|.++.......+.... ...+...+.++... ++++|+.+|++++......+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G----------- 108 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG----------- 108 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-----------
Confidence 35566 667777777777777766655433222 34555556665444 89999999999887431100
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhc-CChHHHHHHHHHHHHhCcC------cHHHHHHHH
Q 001618 449 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLA 521 (1043)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la 521 (1043)
....-..++..+|.+|... |+++.|+.+|++++..... ...++..++
T Consensus 109 --------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 109 --------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 1123466888999999999 9999999999999985421 256788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCCh-------HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCC--Ch--HHHHHhh
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKETFRAASDATDGK--DS--YATLSLG 590 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~--~~--~~~~~lg 590 (1043)
.++...|++++|+..|++.....-.++ ..+...+.+++..|++..|...|++.....|.- +. .....|.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 999999999999999999887542211 245567778999999999999999998876531 11 1222222
Q ss_pred hHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc
Q 001618 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628 (1043)
Q Consensus 591 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 628 (1043)
.. | .... ...+..|+.-|+.+-+++|-
T Consensus 243 ~A-~----~~~D------~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 243 EA-Y----EEGD------VEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HH-H----HTT-------CCCHHHHCHHHTTSS---HH
T ss_pred HH-H----HhCC------HHHHHHHHHHHcccCccHHH
Confidence 22 1 1111 15688888888877766654
No 178
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.002 Score=69.32 Aligned_cols=197 Identities=14% Similarity=0.066 Sum_probs=129.3
Q ss_pred hcCChHHHHHHHHHHHHhC------cCcH--------HHHHHHHHHHHHcCChhHHHHHHHHHHHHc---CC-------C
Q 001618 492 QIHDTVAASVLYRLILFKY------QDYV--------DAYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 547 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~------p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~ 547 (1043)
-.|-+++|.++-.+++... |... ..+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 3466677777766666532 1111 223344455566799999988877776654 44 2
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH--HhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
+.+...+|......+-++.|...|..+.+.....+..+.+ .++.+ |... ++-+. +|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~ed---~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAED---LYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHHH---HHHHHHhc
Confidence 3466677777777888999999999999987776665443 45555 6665 33322 22222223
Q ss_pred Cccc----------HHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 626 HTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 626 ~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
.|.| ..+++..|.....++++.+|...+.+.++.....++ .-..-.+..||++....|+..++.....-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 4432 123455577777899999999999999887521111 01234566789999999999999999988
Q ss_pred HHHHhcCCCC
Q 001618 695 CLRKFYYNTD 704 (1043)
Q Consensus 695 al~~~~~~~~ 704 (1043)
++......+|
T Consensus 511 amqlAkKi~D 520 (629)
T KOG2300|consen 511 AMQLAKKIPD 520 (629)
T ss_pred HHHHHhcCCC
Confidence 8887666666
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.57 E-value=0.00024 Score=74.01 Aligned_cols=278 Identities=19% Similarity=0.156 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
.|.+.-.+..+.-..+ +.+++.-++..+..|+++.|.+-|+-++. +|. -...+.++-.-..+.|.++.|+.+-..+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4444444443332332 33444456667777777777777777664 222 1112222222233567777777777777
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH---HHHHH--HHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---DPENV---EALVA--LAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~--la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
...-|.. ...+...-......|+++.|++..+..... .++-. .+-+. -+...+ ..+ ...|...-..+
T Consensus 181 a~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad---p~~Ar~~A~~a 255 (531)
T COG3898 181 AEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD---PASARDDALEA 255 (531)
T ss_pred HhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC---hHHHHHHHHHH
Confidence 7777777 444444555566677777777776655432 22211 11111 111111 112 45566666666
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 001618 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 295 (1043)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 295 (1043)
+++.|+.......-+..++..|+..++-++++.+.+..++ | .++..|....--+.++.-++++.......++
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P-------~ia~lY~~ar~gdta~dRlkRa~~L~slk~n 327 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-P-------DIALLYVRARSGDTALDRLKRAKKLESLKPN 327 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-h-------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCcc
Confidence 6667766666666666666666666666666666644321 1 1122222222222233333333222223344
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001618 296 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 359 (1043)
Q Consensus 296 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~ 359 (1043)
+....+.++...+..|++..|...-+.+....|. ..++..++.+-... |+-.++...+-++++
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4444555555555555555555555555444443 22333333333322 555555555444443
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.56 E-value=1.5e-06 Score=99.90 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~~l~~--~p~~~~a~~~la~~~~~~g 131 (1043)
.+.+..|+.+|+++++.+|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888776643 345566666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
++++|...|++++.++|+ ...+..+|.++...|++++|...|++++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999995 4689999999999999999999999999999998753
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=0.00021 Score=74.79 Aligned_cols=120 Identities=24% Similarity=0.316 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 63 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
..+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555555544443 244445555555555555555555555554 344445555555555555555555555
Q ss_pred HHHHHHHhCCCChhHHHHhHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q 001618 139 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
.+..++...+.. .......+. ++...|+++.|...|.+++..+|
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555544443 222233333 45555555555555555544443
No 182
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.0048 Score=71.97 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=85.5
Q ss_pred HHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
-.-..|.-+...|.|+.|.-+|.. +.-|..|+..+..+|++..|....+++ ++..+|-.........
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch
Confidence 344566667777888888877765 566778888888888988888887775 4456676666666666
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
+.+.-|.-+=-.++-.. .-+-.+.+. |... |.+++-+.+++..+-+.......+..||++|.
T Consensus 1263 ~EFrlAQiCGL~iivha-----deLeeli~~-Yq~r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHA-----DELEELIEY-YQDR------------GYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hhhhHHHhcCceEEEeh-----HhHHHHHHH-HHhc------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 65555543322111111 111223333 4444 88888888888888877777777777888777
Q ss_pred hc
Q 001618 642 EK 643 (1043)
Q Consensus 642 ~~ 643 (1043)
+-
T Consensus 1325 ky 1326 (1666)
T KOG0985|consen 1325 KY 1326 (1666)
T ss_pred hc
Confidence 54
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.55 E-value=2.2e-06 Score=91.96 Aligned_cols=107 Identities=16% Similarity=0.258 Sum_probs=81.7
Q ss_pred HHHHhHHHHHhc-CCchHHHHHHHHHHHHhcCCCC-CCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----
Q 001618 632 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----- 704 (1043)
Q Consensus 632 a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 704 (1043)
++..+|.+|... |+++.|+.+|+++.+.+..... .....++.++|.++...|+|.+|+..|+++.......+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 345668888888 9999999999999998754321 123567889999999999999999999999886533221
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 705 ~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
...++..+.+++..|++..|...+++....+|+-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2456678889999999999999999999998853
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.54 E-value=2.4e-07 Score=74.50 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=45.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
.+|..++..|+|++|+..|++++..+|.+ ..+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45677777777777777777777777776 56677777777777777777777777777777653
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.54 E-value=0.00034 Score=73.21 Aligned_cols=227 Identities=30% Similarity=0.388 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHhHHHHHHHcCCHHHHH
Q 001618 97 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 172 (1043)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555544432 44444455555555555555555555544 23333 334444555555555555555
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001618 173 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 252 (1043)
Q Consensus 173 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 252 (1043)
..+..++...+.........+. + ++...|++..+...+..++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~-~~~~~~~~~~a~~~~~~~~~~ 159 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLAL-----------------------------------G-ALYELGDYEEALELYEKALEL 159 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHH-----------------------------------H-HHHHcCCHHHHHHHHHHHHhc
Confidence 5555555444443222222222 0 444444444444444444321
Q ss_pred cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q 001618 253 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331 (1043)
Q Consensus 253 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 331 (1043)
.+........+...+..+...+++..|+..+..++. ..+. ....+..++..+...+.+..|+..+..++...|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (291)
T COG0457 160 DPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA 236 (291)
T ss_pred CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH
Confidence 100012233444444446666677777777776665 2233 355566677777777777777777777777776655
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363 (1043)
Q Consensus 332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 363 (1043)
..+..++..+...+.+..+...+.+++...|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666666666556677777777777776665
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.53 E-value=1.7e-06 Score=85.10 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Q 001618 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338 (1043)
Q Consensus 259 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 338 (1043)
....++.+|.++...|++++|+..|.+++...+.++....++..+|.++...|++++|+..|++++.+.|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45678888999999999999999999998654333334567889999999999999999999999999888888888888
Q ss_pred HHHH-------HcCCHHHH-------HHHHHHHHHhCCCC
Q 001618 339 HIYV-------QLGQIEKA-------QELLRKAAKIDPRD 364 (1043)
Q Consensus 339 ~~~~-------~~g~~~~A-------~~~~~~~l~~~p~~ 364 (1043)
.++. ..|++..| +.+|++++..+|.+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888 55665533 44444444445543
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.51 E-value=2.8e-06 Score=77.30 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~ 156 (1043)
.+..++..|...+..|+|..|++.|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45688899999999999999999999999988765 5788999999999999999999999999999987 356678
Q ss_pred hHHHHHHHcCC
Q 001618 157 GIGLCRYKLGQ 167 (1043)
Q Consensus 157 ~lg~~~~~~g~ 167 (1043)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887654
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=3.4e-06 Score=85.08 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001618 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 305 (1043)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|..|..+|..+.+.++..+..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45555555666666666666666666666666666677777777777777777777777777666666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 335 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 335 (1043)
++..+|+.++|...|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 777777777777777777666666554433
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.48 E-value=7e-08 Score=97.54 Aligned_cols=242 Identities=13% Similarity=0.048 Sum_probs=146.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
-..|..|+.+|.|++|+.+|.+.+..+|.|+..+...|.+|++.+.|..|...+..++.++... ..+|...|.+-..+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLG 179 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHh
Confidence 3467777777777777777777777777777777777777777777777777777777776655 455666777777777
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
...+|..-++.+|.+.|++.+....++.+..-. ++ .-+.+.-|....+.. -.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-------E~----~I~~KsT~G~~~A~Q-----------------~~ 231 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLR-------ER----KIATKSTPGFTPARQ-----------------GM 231 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-------hh----hHHhhcCCCCCcccc-----------------ch
Confidence 777777777777777777655444433322110 00 000011111110000 00
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 326 (1043)
.+++ ..-.-|..+...|.++.++..|...+... ..+...... +..+.+.-+++.++.-..+.+..
T Consensus 232 ~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 232 IQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred hhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 0000 11223555667777777777776655422 222222222 56677777888888877777776
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001618 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372 (1043)
Q Consensus 327 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 372 (1043)
.|.........+.+-.-.|...++...++.++.+.|.+......+.
T Consensus 297 ~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 297 KPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred CCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 6665555555555555566777788888888888777655444443
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=98.47 E-value=1.9e-06 Score=80.14 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=93.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001618 112 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191 (1043)
Q Consensus 112 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 191 (1043)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..++++++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 444556788899999999999999999999999999998 6778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001618 192 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 192 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 223 (1043)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999998 8899999988887 44443
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.47 E-value=0.00072 Score=70.63 Aligned_cols=293 Identities=17% Similarity=0.125 Sum_probs=196.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 200 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~-~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 200 (1043)
..|.+..-.|+-..|.+.-.+.-.+ ..+..+.+++.-+..-.-.|+++.|..-|+.++. +|.. -+..|-.+|+...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt--RllGLRgLyleAq 165 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET--RLLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH--HHHhHHHHHHHHH
Confidence 3445555667777777776666533 2333455566666677777777777777777664 3322 1233334444443
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHH--HHHHHHHHHHcCC
Q 001618 201 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHS--YYNLARSYHSKGD 275 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~--~~~la~~~~~~g~ 275 (1043)
..+..+.|+.+-..+...-|.-+-++.......+..|+++.|+++.+......-..+.. ..+ +...+.... .-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence 34447777778888888888877777777777788888888888887766433222221 111 222222222 234
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
...|...-..+.+ ..|+...+-..-+..++..|+..++-.+++.+.+..|. +.++ +..++.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHH
Confidence 6677777777776 67888888889999999999999999999999998875 3332 2223444554 3444444
Q ss_pred ---HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 001618 356 ---KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDAL 430 (1043)
Q Consensus 356 ---~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 430 (1043)
++..+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+-... |+-.++..++-+++
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 44456799999999998877 899999988877777766544 46677778776655 99999999999998
Q ss_pred cc
Q 001618 431 GD 432 (1043)
Q Consensus 431 ~~ 432 (1043)
..
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 75
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=4.7e-06 Score=75.86 Aligned_cols=111 Identities=12% Similarity=0.189 Sum_probs=98.1
Q ss_pred cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHH
Q 001618 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 707 (1043)
Q Consensus 629 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 707 (1043)
.+..++.-|.-....|+|.+|+..|+.+...+|.+.+ ...+.+.||.+|+..|++.+|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4566778888899999999999999999999998765 4589999999999999999999999999999888877 889
Q ss_pred HHHHHHHHHhhhc---------------HHHHHHHHHHHHHhCCCCcch
Q 001618 708 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 708 l~~la~~~~~~g~---------------~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
++..|.+++.... ...|...|++++...|++.-+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999998876 778999999999999988654
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=6.1e-06 Score=90.48 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHH
Q 001618 96 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175 (1043)
Q Consensus 96 ~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 175 (1043)
.++++.|+.+|+++.+.+|. +...++.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.|+.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555555554444432 23334444444445555555555555555544 344444455555555555555555
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001618 176 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213 (1043)
Q Consensus 176 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 213 (1043)
++++...|++...|..|+.+|...|+ ++.|+..++
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 55555555555555555555555554 555554444
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.42 E-value=0.0046 Score=65.94 Aligned_cols=424 Identities=12% Similarity=0.025 Sum_probs=226.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 71 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 71 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+..-++.+|++...|+.+...+-.+|.+++-.+.++++..-.|--+.+|......-...++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45666788999999999999999999999999999999999888888888777666677789999999999998765443
Q ss_pred hhHHHHhHHHHHHHcC-----C----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHH
Q 001618 151 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 215 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 215 (1043)
..|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332222222221 1 1223332222333567777777776665543221 11244455566666
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Q 001618 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---- 291 (1043)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---- 291 (1043)
+...-.+..-+ -.+|+.-..-++++-...-. .. ..--|-.|...|++......
T Consensus 188 l~tP~~nlekl---------W~dy~~fE~e~N~~TarKfv-ge-------------~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 188 LQTPMGNLEKL---------WKDYENFELELNKITARKFV-GE-------------TSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred HcCccccHHHH---------HHHHHHHHHHHHHHHHHHHh-cc-------------cCHHHHHHHHHHHHHHHHhccccc
Confidence 65443332111 11222211111111110000 00 00012233333333322110
Q ss_pred CCCCCh-----------hhHHHHHHHHHHc-----CC-HHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 292 KPHEFI-----------FPYYGLGQVQLKL-----GD-FRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 292 ~~~~~~-----------~~~~~la~~~~~~-----g~-~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
.+|.+. .-|+++...-... |+ ... ---.+++++...|-.+++|+.........++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 001000 0122222211111 11 111 12245556666666777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 001618 354 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDA 429 (1043)
Q Consensus 354 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 429 (1043)
..+.+...|. ....++.+| ...+.+....+|+++...+... +.++..-.. -|+++...+++-+-
T Consensus 325 v~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 325 VERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHHHHH
Confidence 6666555554 556666677 5555555555565554432221 000000000 11121111111100
Q ss_pred HcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh
Q 001618 430 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 509 (1043)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 509 (1043)
+ .....++..+...-.+..-.+.|..+|.++-+.
T Consensus 393 ~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 393 I----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred H----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 0 011223333333333444466777777776654
Q ss_pred CcCcHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 510 YQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 510 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
.--...+|..-|.+ +...|++.-|..+|+-.+...|+++.....+-..++..++-..|...|++++..
T Consensus 427 ~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 32223444444433 456788888999999999999998887777777888888888899999877654
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.37 E-value=1.2e-05 Score=72.40 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 156 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~---~~~~~~~ 156 (1043)
+.++|.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++.+...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3578899999999999999999999999875443 568899999999999999999999999998887 4 56677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999999998887764
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.36 E-value=0.0096 Score=66.74 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 409 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 409 (1043)
...|......-...|++....-.|++++--.......|+..+... ..|+..-+-..+..+.++... ..+.+...-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----~~~~i~L~~ 372 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----KTPIIHLLE 372 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----CCcHHHHHH
Confidence 355666666667777888888888777766666677777777777 667777766666666555332 234555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
+.+.-..|++..|...|+..... . |....+-...+..
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e------------------------------------------~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE------------------------------------------Y-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh------------------------------------------C-CchhhhHHHHHhH
Confidence 66666777777777777777653 2 4455555555555
Q ss_pred HHhcCChHHHHH---HHHHHHHh--CcC-cHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 490 LEQIHDTVAASV---LYRLILFK--YQD-YVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 490 ~~~~g~~~~A~~---~~~~~l~~--~p~-~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
....|+.+.+.. ++.....- ++. ....+...+.. +.-.++.+.|...+.+++...|.+...+..+..+....
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 666666666663 22222221 111 12223333332 33456677777777777777777777766666554443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=7.5e-05 Score=73.53 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=123.8
Q ss_pred CChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHHHHHhhhccchHHHHHHHH
Q 001618 494 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFR 572 (1043)
Q Consensus 494 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (1043)
...+..+..+++-+ ..+.+.++.++.-.+.|.-.+..+++.++.+ |..|.....+|.+.++.|+.+.|..+|+
T Consensus 163 ~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 163 LAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred cchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33455666666644 3456667777788888888888888888888 6677888889999999999999998888
Q ss_pred HhhhcCCC-----CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCch
Q 001618 573 AASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 647 (1043)
Q Consensus 573 ~~l~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~ 647 (1043)
.+-+.... ...-...+.+.+ |.-. +++..|...|.+++..+|.++.+.++.|.|+.-.|+..
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 55432211 122333344444 5555 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHhHHHH
Q 001618 648 VSKDLFTQVQEAASGSVFVQMPDVWINLAHV 678 (1043)
Q Consensus 648 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~ 678 (1043)
.|+..++.+.+..|+... +..+.+||-.+
T Consensus 304 DAiK~~e~~~~~~P~~~l--~es~~~nL~tm 332 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYL--HESVLFNLTTM 332 (366)
T ss_pred HHHHHHHHHhccCCccch--hhhHHHHHHHH
Confidence 999999999999986532 34456666544
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.33 E-value=0.011 Score=66.22 Aligned_cols=187 Identities=9% Similarity=-0.045 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
...|......-...|+++...-.|++++--| ......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHH
Confidence 3556666677778899999999999988643 246678
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+....|++..|...++...+..|+...+-.....+..+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888899999988887777654 666777788888888889999999999999998899888888888888888
Q ss_pred cchHHHHH---HHHHhhhcCCCCChHH--HHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHh
Q 001618 562 DDWVKAKE---TFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 636 (1043)
Q Consensus 562 g~~~~A~~---~~~~~l~~~~~~~~~~--~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~l 636 (1043)
|+.+.+.. .+.....-..+..... ++......|... ++.+.|...+.+++...|.+...+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 88888873 3333322211112211 111122212222 788889999999999999888877777
Q ss_pred HHHHHhcC
Q 001618 637 GVVLAEKG 644 (1043)
Q Consensus 637 a~~~~~~g 644 (1043)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 66665443
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.32 E-value=1.7e-06 Score=70.27 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 95 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 95 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444445555554444444444444444444444444444444444444444443
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=1.8e-06 Score=70.18 Aligned_cols=64 Identities=34% Similarity=0.563 Sum_probs=33.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 129 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555 444555555555555555555555555555555544444443
No 201
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.7e-05 Score=87.06 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001618 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 202 (1043)
Q Consensus 123 la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 202 (1043)
+..++...++++.|+.+|+++...+|+. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~- 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK- 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Confidence 3444556688999999999998888763 45588888889999999999999999999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 203 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 203 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
++.|+.+.++++...|.+...|..|+.+|...|+++.|+-.++.+-
T Consensus 250 --~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 --YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999998887653
No 202
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.29 E-value=0.024 Score=68.18 Aligned_cols=472 Identities=15% Similarity=0.101 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHhCCC----cHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCC---chHHHHHHHHHHHHcCCH
Q 001618 205 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~~~~g~~ 276 (1043)
+..|+.+++-+++..+- ...+...+|.+++ ...+++.|...+.+++.....+.. ...+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44566666666642211 2345666676666 677777788777777655443111 134456667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCChhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHHC--CCcHH----HHHHHHHHHHHcCCH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 347 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 347 (1043)
. |+..+.+.+......+..... .+.+ ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 888888887754432222211 1111 223333478888888888877654 23332 223345566666777
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001618 348 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 401 (1043)
Q Consensus 348 ~~A~~~~~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 401 (1043)
+.++..+.++.... +....+|..+..+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777764321 12234454444433 56666666555544443332211110
Q ss_pred ------------c------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHh
Q 001618 402 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 457 (1043)
Q Consensus 402 ------------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1043)
. .-++..-|......+..+.|..++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 11222234455566666678888877776311000
Q ss_pred hhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHH
Q 001618 458 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
. . .....+...... ..-..++..+. ..+.+..+.+.+..+++..|...+
T Consensus 336 --------~-~---~~~~~~~sl~~~-------------~~~~~~~~~l~------~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 --------I-K---SPSAPSESLSEA-------------SERIQWLRYLQ------CYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred --------c-c---CCCCCCcCHHHH-------------HHhHHHHHHHH------HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0 0 000000000000 00011111110 234455566666778887777777
Q ss_pred HHHHHHc---CC------ChHHHHHHHHHhhhccchHHHHHHHH--------HhhhcCCCCChHHHHHhhhHHHHHHHhh
Q 001618 538 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 600 (1043)
Q Consensus 538 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~l~~~~~~~~~~~~~lg~~~y~~~~~~ 600 (1043)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+. ..|. +.-. ..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila-~LNl-~~I~-~~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA-ALNL-AIIL-QY 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH-HHHH-HHHh-Hh
Confidence 7666543 22 36678888888888899999999997 343444444443332 2222 1111 11
Q ss_pred cccChhHHhhhHHHHHHHHHHHHccCcc-c-HHHHHHhHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-chhHHHh
Q 001618 601 EKRAPKLEATHLEKAKELYTRVIVQHTS-N-LYAANGAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 674 (1043)
Q Consensus 601 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~-~~a~~~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 674 (1043)
+..... ...+....+...+......|+ + ..++..+..++. ..-...++...+...++.. ....... ..-++.-
T Consensus 462 ~~~~~~-~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 462 ESSRDD-SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hcccch-hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 110000 000133333333333333333 2 222222222222 1223347777777776665 2211111 2234555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHH-----HHHHHHHhhhcHHHHHHHHHHHHH
Q 001618 675 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 733 (1043)
Q Consensus 675 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~-----~la~~~~~~g~~~~A~~~~~ka~~ 733 (1043)
+++.++ .|...+.......+.......++ ..+|. .+...+...|+.++|.....+...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 78888877777777765544433 34443 344556668999998887776643
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=1.5e-05 Score=71.60 Aligned_cols=97 Identities=27% Similarity=0.266 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKALG 338 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la 338 (1043)
+.+.+|.++-..|+.++|+.+|++++......+....+++.+|..+...|++++|+..++..+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45555666666666666666666665432222333445555666666666666666666666655555 445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 001618 339 HIYVQLGQIEKAQELLRKAA 358 (1043)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~l 358 (1043)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56666666666665555444
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.3e-05 Score=75.52 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
+-.-|.-+|..|+|.+|..-|..+|...|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33445666777777777777777777776652 33455667777777777777777777777777777777777777
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 196 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
|-+... +++|+..|.+++..+|....+.-.+
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHH
Confidence 777665 7777777777777777666544433
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.25 E-value=5.3e-06 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 91 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 91 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+|+..++|+.|+.+++.++..+|.++..++.+|.+++..|++.+|+..|++++...|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344445555555555555555555555555555555555555555555555555555544
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=0.00029 Score=65.85 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhh
Q 001618 531 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610 (1043)
Q Consensus 531 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 610 (1043)
+....-..+.+...|.. .-.+.++..+...|++.+|...|.+++.-.-.++...++.+++. .+.. +
T Consensus 73 ~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------~ 138 (251)
T COG4700 73 ERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------Q 138 (251)
T ss_pred hHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------c
Confidence 33333334444444442 23456666667777777777777776665444566666666666 5555 6
Q ss_pred hHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHH
Q 001618 611 HLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688 (1043)
Q Consensus 611 ~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 688 (1043)
++..|...++++.+.+|. .+.....+|.++...|.+..|...|+.++.-+| .+......+..+..+|+..+|
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhHH
Confidence 666677777766666665 445555666667777777777777777776665 345555666666666766666
Q ss_pred HHHHHHHHHH
Q 001618 689 MKMYQNCLRK 698 (1043)
Q Consensus 689 ~~~~~~al~~ 698 (1043)
..-|..+.+.
T Consensus 213 ~aq~~~v~d~ 222 (251)
T COG4700 213 NAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.22 E-value=9.1e-07 Score=89.67 Aligned_cols=224 Identities=9% Similarity=-0.059 Sum_probs=149.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
-..|.-|+.+|+|++|+.+|.+++. ..|.++..+.+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~NR 137 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHINR 137 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhhH
Confidence 3468899999999999999999987 567889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccc---
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD--- 563 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--- 563 (1043)
|..|+++..|..|..-+..++.++..+..+|.+.+.+-..+|...+|.+.++.++.+.|.+.++.-.++.+-.-...
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876666554321000
Q ss_pred ------hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhH
Q 001618 564 ------WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 637 (1043)
Q Consensus 564 ------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la 637 (1043)
+-.|.....+++.. -.-|+. |+.. +.+..++..|..-+..+..+...-.+ +
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~---------K~~G~~-Fsk~------------~~~~~~i~~~~~~~A~~~~~~~L~~~-~ 274 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPI---------KKPGYK-FSKK------------AMRSVPVVDVVSPRATIDDSNQLRIS-D 274 (536)
T ss_pred hhcCCCCCccccchhhhccc---------cCcchh-hhhh------------hccccceeEeeccccccCccccCccc-H
Confidence 11111111111111 112333 4444 66777777666555444333222222 4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001618 638 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 701 (1043)
..+.+.-++..|+.--.+.....|. ........|..-.-.|...++...++.++..-|.
T Consensus 275 ~~~~KI~~~~~~~~~~~~~~~~~~s-----~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 275 EDIDKIFNSNCGIIEEVKKTNPKPT-----PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred HHHHHHhhcchhHHHHHHhcCCCCC-----cCcccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence 4444555566665544444433321 1112223344444456666777777777766443
No 208
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.19 E-value=0.00044 Score=75.65 Aligned_cols=116 Identities=20% Similarity=0.096 Sum_probs=82.0
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 73 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 73 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..+++.+|.+...+..-+..+..+|+.-+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++..++.-.|..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 44555566555444444444455788888888888888776654 3467788888888888888877777776666655
Q ss_pred hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
...++.++.++..+|.+......|..+.+.+|......
T Consensus 283 -t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 283 -TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred -cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 44477788888888888888888888888887654443
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=8e-06 Score=67.39 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=58.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
..+++..++|+.|+.++++++..+|++ ...++..|.|+..+|++.+|+..|+++++..|++..+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467888888888888888888888888 6778888888888899999998898888888888877665553
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.18 E-value=0.017 Score=61.91 Aligned_cols=482 Identities=11% Similarity=0.101 Sum_probs=252.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 105 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 105 ~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
-++.-++.+|+|...|+.+..-+-.+|.+++-.+.|.++..-.|-. +.+|......-...+++..-...|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-EHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-cHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 4556678899999999999999999999999999999998877776 44455444444455677777778888876433
Q ss_pred cHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 001618 185 NVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT 258 (1043)
Q Consensus 185 ~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 258 (1043)
+.+.|...-..-.+.+. ...+-+|.++.-...-.+|.....|...+..+-.-..
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~-------------------- 167 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEE-------------------- 167 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccc--------------------
Confidence 24444333222222221 0112333333333333455555555544433221100
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHH
Q 001618 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKA 336 (1043)
Q Consensus 259 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~ 336 (1043)
++ -...+.+.+.-...|.+++. .+-++ +-.+...-.+++. .+.++.. .-.+....+..
T Consensus 168 -------~~-kwEeQqrid~iR~~Y~ral~---tP~~n------leklW~dy~~fE~---e~N~~TarKfvge~sp~ym~ 227 (660)
T COG5107 168 -------LG-KWEEQQRIDKIRNGYMRALQ---TPMGN------LEKLWKDYENFEL---ELNKITARKFVGETSPIYMS 227 (660)
T ss_pred -------cc-cHHHHHHHHHHHHHHHHHHc---Ccccc------HHHHHHHHHHHHH---HHHHHHHHHHhcccCHHHHH
Confidence 00 01122334444555555553 11111 1111111111111 1111110 00000001110
Q ss_pred HHHHHHHcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHH------hcCC-HHHHHH-HHHHHHHHHHhcCCCCcH
Q 001618 337 LGHIYVQLGQIEKAQELL-----RKAAKIDPRDAQAFIDLGELL------ISSD-TGAALD-AFKTARTLLKKAGEEVPI 403 (1043)
Q Consensus 337 la~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~------~~~~-~~~A~~-~~~~a~~~~~~~~~~~~~ 403 (1043)
--..|....+....+..+ +++-+.......-|.+....- ..++ ..+-+. .+++++..++- .+
T Consensus 228 ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~-----~~ 302 (660)
T COG5107 228 ARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY-----AE 302 (660)
T ss_pred HHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh-----hH
Confidence 001111111111111000 000000000011132222211 1111 122121 23444444332 36
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHH
Q 001618 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 483 (1043)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1043)
++|+.........++-+.|+.....++.. .+.+.
T Consensus 303 evw~dys~Y~~~isd~q~al~tv~rg~~~----------------------------------------------spsL~ 336 (660)
T COG5107 303 EVWFDYSEYLIGISDKQKALKTVERGIEM----------------------------------------------SPSLT 336 (660)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhcccC----------------------------------------------CCchh
Confidence 77777777777888888888877776653 33466
Q ss_pred HhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 001618 484 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK---ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560 (1043)
Q Consensus 484 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 560 (1043)
+.++.+|...++.+.-..+|.++...- ...+..+..-. .-|+++...+++-+-. ....-+|..+.+.-.+
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r 409 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLR 409 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHH
Confidence 677788877777776667777665311 00011111100 0123322222221111 1233455555555556
Q ss_pred ccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 561 NDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 561 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
..-...|..+|-++-+.. ..++.|..+++.. |... +++.-|..+|+--+...|++....+..-..
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E--~~~~------------~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE--YYAT------------GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHH--HHhc------------CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 666888999999887765 5567766655443 3444 889999999999999999988888888888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 703 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 703 (1043)
+...++-..|..+|+++++..... ....+|-.+...-..-|....++.+=+.....+|..+
T Consensus 476 Li~inde~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 889999999999999888765311 2245666666666667888888877777777765443
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.15 E-value=0.019 Score=61.72 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 135 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~ 135 (1043)
+.+++++|..+|.++.......+ +++.++....+-..+.+.-...+...-+..|..+...+..|...++.+.|.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 44567799999999876554443 3344455555667788877777777777889889999999999999999999
Q ss_pred HHHHHHHHHHhCCCC------------hh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 136 SLEFYKRALQVHPSC------------PG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 136 Al~~~~~~l~~~p~~------------~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
|+..+......-... .. ..-...+.|+...|.+.+++..+.+.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999887665441111 01 11234789999999999999999988764
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0011 Score=65.66 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=164.9
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-------------cCc------HHHHHHHHHHHHHcCChhHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-------------QDY------VDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
.....+|...-.++.++..+++|..-+...-..+ |+- ....+..+.+....|+..+.+.-+
T Consensus 66 ~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl 145 (366)
T KOG2796|consen 66 TDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRL 145 (366)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3455666667777778888888776655443322 211 123344455555666666665554
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhccc-hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 538 NEALKVNGKYPNALSMLGDLELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 538 ~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
......-. .+... ...+. .+..+..+++-+. ...+.+.++ ..-. |.|.-.+
T Consensus 146 ~~L~~~V~-------~ii~~-~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~-llG~------------kEy~iS~ 197 (366)
T KOG2796|consen 146 HKLKTVVS-------KILAN-LEQGLAEESSIRLWRKRLG-------RVMYSMANC-LLGM------------KEYVLSV 197 (366)
T ss_pred HHHHHHHH-------HHHHH-HHhccchhhHHHHHHHHHH-------HHHHHHHHH-Hhcc------------hhhhhhH
Confidence 44332211 01111 11122 2333344433221 223334444 4444 8889999
Q ss_pred HHHHHHHccC-cccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 617 ELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 617 ~~~~~~l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
..+.++++.+ |.++.....||.+.++.|+.+.|..+|+.+-+.... +.......|.-+.+.+|.-++++..|...|.+
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 9999999998 558999999999999999999999999977654321 12224567888999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC---cchhhHHHHHH
Q 001618 695 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAM 749 (1043)
Q Consensus 695 al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~---~~~~~nla~~~ 749 (1043)
++.. ++.++....+-|.|+.-.|+..+|++..+.++...|.. .++.|||-.+|
T Consensus 278 i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 278 ILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred cccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9988 67778899999999999999999999999999999964 45566666554
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=4.5e-05 Score=71.90 Aligned_cols=111 Identities=19% Similarity=0.266 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
.+-.-|.-++..|+|.+|...|..+|...|..+ ..+...|.++++++.++.|+..+.+++.++|.. ..+....+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRA 175 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRA 175 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHH
Confidence 345568899999999999999999999998753 456778999999999999999999999999998 56677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
.+|.++..++.|+.-|.++++.+|....+.-..+.+-
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9999999999999999999999999877766665543
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.11 E-value=1e-05 Score=67.80 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=55.9
Q ss_pred CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC----C-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 667 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
+...++.++|.+|..+|++++|+.+|++++......+ . ..++..+|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999998742222 1 667889999999999999999999999876
No 215
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.10 E-value=0.056 Score=64.97 Aligned_cols=409 Identities=18% Similarity=0.148 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC--CcH----HHHHHHHHHHHHcCCHH
Q 001618 277 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 348 (1043)
..|+.+++.+++..+.+ .....+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556666655422221 223455777787777 67788888888888876642 222 34456677777777666
Q ss_pred HHHHHHHHHHHhCCC---C-HHHHHHHH--HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHH
Q 001618 349 KAQELLRKAAKIDPR---D-AQAFIDLG--ELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 420 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~---~-~~~~~~la--~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~ 420 (1043)
|...+.+.+..... . ....+.+. .+. ..+++..|+..++.........++... ..+....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888888775433 1 22222222 222 336888899888887776543322111 222333466677788888
Q ss_pred HHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH--HHHhcCChHH
Q 001618 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 498 (1043)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 498 (1043)
.+++.++.+....... .+++ . ..+....++..+-. ++...|++..
T Consensus 197 d~~~~l~~~~~~~~~~-q~~~------------------------------~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSL-QLDP------------------------------S--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhc-ccCC------------------------------C--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888876532100 0000 0 11223334444433 3455667666
Q ss_pred HHHHHHHHHH------hCc---C---------------------------------cHHHHHHHHHHHHHcCChhHHHHH
Q 001618 499 ASVLYRLILF------KYQ---D---------------------------------YVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 499 A~~~~~~~l~------~~p---~---------------------------------~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
+...++.+-. ..| . .+-+|+.-+......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 6655444321 111 0 012344444455666766678787
Q ss_pred HHHHHHHcCCCh--------------------------HHHHHHHHHhhhccchHHHHHHHHHhhhcCC---C-----CC
Q 001618 537 VNEALKVNGKYP--------------------------NALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KD 582 (1043)
Q Consensus 537 ~~~al~~~p~~~--------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~-----~~ 582 (1043)
+.+++..-.... .+....+++.+-.++|..|...+..+..... . ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 777765421111 1445567777888999999999988776431 1 23
Q ss_pred hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH--------HHHccCcc---cHHHHHHhHHHHHhcCCchH---
Q 001618 583 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLAEKGQFDV--- 648 (1043)
Q Consensus 583 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~P~---~~~a~~~la~~~~~~g~~~~--- 648 (1043)
+..++..|-. +... |+.+.|...|. .+....+. .+.+..++..++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 4555555555 5555 99999999998 55555555 34456677777776665444
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHhHHHHH-----H--HccCHHHHHHHHHHHHHHh-cCCCC----HHHHHHHHHHH
Q 001618 649 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVY-----F--AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 715 (1043)
Q Consensus 649 -A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-----~--~~g~~~~A~~~~~~al~~~-~~~~~----~~~l~~la~~~ 715 (1043)
+-.++.++..... +.+..++..++++ . ..-...++...+..+++.. ....+ ..++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4444444433222 1222233332222 1 2224458888888888887 32222 44566677777
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCC
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
+ .|+..+.......++++.+..
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 788888666666666665433
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.08 E-value=0.027 Score=60.65 Aligned_cols=145 Identities=13% Similarity=0.044 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
.+...|.++-.++++.+|..+|.++.+...+++ ..+.++....+-..+.+.-...+...-+..|.+ +.+.+-.|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 455678888999999999999999987665543 333444444555667776666666666677866 66677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 239 (1043)
...++.+.+.+|+..+......-..+...|...- +.+- . .+...-...|.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~l----------~-~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQL----------F-SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHHH----------h-hHHHHHHHHHHHHHhcCCc
Confidence 8889999999998888766544222221111110 0000 0 1112234456777788888
Q ss_pred HHHHHHHHHHHhh
Q 001618 240 FLVEQLTETALAV 252 (1043)
Q Consensus 240 ~~A~~~~~~~l~~ 252 (1043)
.++..++++++..
T Consensus 145 ~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 145 SEGRAILNRIIER 157 (549)
T ss_pred chHHHHHHHHHHH
Confidence 8888888877753
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.0004 Score=64.98 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
..-.+.++......|++.+|...|++++.- +...++.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG------------------------------------------~fA~d~a~ 126 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG------------------------------------------IFAHDAAM 126 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------------------------------------------ccCCCHHH
Confidence 455677899999999999999999999863 44568889
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 560 (1043)
+..++......+++..|...++.+.+.+|. .++..+.++..+...|.+.+|...|+.++...|. +.....++.++.+
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~ 205 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK 205 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 999999999999999999999999998885 4778889999999999999999999999999886 6778888999999
Q ss_pred ccchHHHHHHHHHhhh
Q 001618 561 NDDWVKAKETFRAASD 576 (1043)
Q Consensus 561 ~g~~~~A~~~~~~~l~ 576 (1043)
+|+..+|..-+..+.+
T Consensus 206 qgr~~ea~aq~~~v~d 221 (251)
T COG4700 206 QGRLREANAQYVAVVD 221 (251)
T ss_pred hcchhHHHHHHHHHHH
Confidence 9988887776665543
No 218
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.058 Score=63.52 Aligned_cols=270 Identities=15% Similarity=0.145 Sum_probs=157.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHH
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 169 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~ 169 (1043)
|.+....+-|++|..+|++.- -+..+...+ .-..++.+.|.++..++ +.+.+|..+|.+..+.|...
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchH
Confidence 445555555666666665431 122222221 12334555555554443 12567888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001618 170 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249 (1043)
Q Consensus 170 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 249 (1043)
+|+..|-++ +++..+.....+....|. |++-+.++.-+-+.. ..+.+-..|...|...++..+.+.++.
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc--
Confidence 888877654 455566666666666666 777776666554432 122233445556666666665554432
Q ss_pred HhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 001618 250 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329 (1043)
Q Consensus 250 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 329 (1043)
.|+. .-.-..|.-++..|.|+.|.-+|...-. |..++..+..+|+|+.|+...+++ +
T Consensus 1191 ------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA-----n 1247 (1666)
T KOG0985|consen 1191 ------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA-----N 1247 (1666)
T ss_pred ------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-----c
Confidence 1222 2344567778888888888777765432 777888888999999998888776 4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 001618 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408 (1043)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 408 (1043)
+..+|...+.++...+.+.-|.-+=-.+ --..+-+-.+...| ..|-+++-+..++.++.+-.. ....+..
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-----HMgmfTE 1318 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-----HMGMFTE 1318 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-----HHHHHHH
Confidence 5567777666666665554443211110 11234455566667 777777777777666554322 2344555
Q ss_pred HHHHHHH
Q 001618 409 IGVIHFE 415 (1043)
Q Consensus 409 la~~~~~ 415 (1043)
+|.+|.+
T Consensus 1319 LaiLYsk 1325 (1666)
T KOG0985|consen 1319 LAILYSK 1325 (1666)
T ss_pred HHHHHHh
Confidence 5555543
No 219
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.044 Score=59.93 Aligned_cols=435 Identities=13% Similarity=0.086 Sum_probs=220.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 145 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~~l~ 145 (1043)
.-..+|..++...+.++..|.......-+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 457788889988899999999998888888889999999999999999999999999988887765 9999999999999
Q ss_pred hCCCChhHHHHhHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---------hhHHhH----------
Q 001618 146 VHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQA---------NEAAGI---------- 205 (1043)
Q Consensus 146 ~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~---------- 205 (1043)
.+|++ +.+|.. |+++.- +-.=...-.+.+..+..+...-...+...... +.....
T Consensus 169 ~npds-p~Lw~e----yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 169 FNPDS-PKLWKE----YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred cCCCC-hHHHHH----HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHH
Confidence 99999 444432 221110 00001111122222222221111111100000 000000
Q ss_pred -HH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001618 206 -RK-GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 283 (1043)
Q Consensus 206 -~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 283 (1043)
.+ -...+.-.....|.++..+..++.-.+ +-..... . ....+......---.-+....+|
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l------------~i~~~td-l-----~~~~~~~~~~~~~~k~s~~~~v~ 305 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQREL------------EILSQTD-L-----QHTDNQAKAVEVGSKESRCCAVY 305 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHH------------HHHHHhh-c-----cchhhhhhchhcchhHHHHHHHH
Confidence 00 001111222235666666655544322 1111100 0 00000111111111122223555
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHH--cC-CHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 001618 284 MASVKEINKPHEFIFPYYGLGQVQLK--LG-DFRSALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKA-QELLRK 356 (1043)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~la~~~~~--~g-~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 356 (1043)
+.++..++. ......+..+-.-... .| ....-+.+++++... .+..+.-+..+..++.......++ ......
T Consensus 306 ee~v~~l~t-~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e 384 (568)
T KOG2396|consen 306 EEAVKTLPT-ESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE 384 (568)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH
Confidence 555542110 0000111111111111 11 223333444444332 455566666666666666543332 222223
Q ss_pred HHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC-HHHHHHH-HHHHHcc
Q 001618 357 AAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQS-FKDALGD 432 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~-~~~al~~ 432 (1043)
. ..++...|...-.+. ...+++- ..+.....+.+... ...+....... .|+ ....... +-.++.
T Consensus 385 ~---f~~s~k~~~~kl~~~~~s~sD~q~--~f~~l~n~~r~~~~----s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~- 452 (568)
T KOG2396|consen 385 L---FRDSGKMWQLKLQVLIESKSDFQM--LFEELFNHLRKQVC----SELLISWASAS--EGDSLQEDTLDLIISALL- 452 (568)
T ss_pred H---hcchHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHhc----chhHHHHHHHh--hccchhHHHHHHHHHHHH-
Confidence 2 234555555444444 1222221 11111111111100 01111011000 122 1111110 001110
Q ss_pred hhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC
Q 001618 433 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512 (1043)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 512 (1043)
.. ..+...+.-..+-..+...|-+.+|...|......-|-
T Consensus 453 --------------------------------s~--------~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~ 492 (568)
T KOG2396|consen 453 --------------------------------SV--------IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF 492 (568)
T ss_pred --------------------------------Hh--------cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc
Confidence 00 23445556666677788889999999999999988888
Q ss_pred cHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 513 YVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 513 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
....+..+..+-.. .-+..-+..+|..++.....++.+|..+-..-...|..+.+-.++-++++.
T Consensus 493 sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 493 SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 77777666555322 223677889999999999999999999988888888888777777777653
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.99 E-value=0.00043 Score=60.64 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 162 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~ 162 (1043)
+-..|..+...|+++.|++.|.+++...|.++.++...|..+.-.|+.++|+..+.+++.+.... .-..+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888899999999999999999999999999999999999999999999999999985332 234577889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001618 163 YKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
..+|+.+.|..-|+.+.++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887543
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.98 E-value=0.00022 Score=62.39 Aligned_cols=104 Identities=19% Similarity=0.100 Sum_probs=82.8
Q ss_pred HhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 712 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la 712 (1043)
.-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+..+|+.-+.+++........ ...+..-|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 447788888999999999999999888 77889999999999999999999999999988544333 55667778
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHH
Q 001618 713 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 745 (1043)
Q Consensus 713 ~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nl 745 (1043)
.+|...|+-+.|..-|+.+-++. ++.++..|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG--S~FAr~QL 153 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG--SKFAREQL 153 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC--CHHHHHHH
Confidence 88888999999999898887773 44443333
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0011 Score=64.61 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHc
Q 001618 346 QIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 416 (1043)
Q Consensus 346 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 416 (1043)
++.+|+..+++++++..+. ..-+..++.+| ...++++|+.+|+++-..+........ ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555443222 22345678888 557999999999999888765322222 35566677778889
Q ss_pred CCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCCh
Q 001618 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 496 (1043)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 496 (1043)
++|.+|+..|+++......+.. +....-..++.-|.++.-..+.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHHHHHHHHhHhcccH
Confidence 9999999999988763210000 0111223445556677776787
Q ss_pred HHHHHHHHHHHHhCcCcHHH
Q 001618 497 VAASVLYRLILFKYQDYVDA 516 (1043)
Q Consensus 497 ~~A~~~~~~~l~~~p~~~~~ 516 (1043)
-.+...+++....+|...++
T Consensus 212 v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHhcCCccccc
Confidence 77888888888888876544
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.94 E-value=1.8e-05 Score=66.20 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred CcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 626 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
+|+-..+++.+|.+|...|++++|+.+|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356677899999999999999999999999998731 11222357789999999999999999999999999874
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=4.8e-05 Score=82.69 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=39.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+++.+|+++|.+|+..|+|++|+..|++++.++|++.. +|+.+|.+|..+|++++|+..|++++.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555556666666666666666666666666666655553 2555555555555555555555555554
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.84 E-value=7.1e-05 Score=81.40 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 112 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 112 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999842 46999999999999999999999999997
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0025 Score=65.29 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=133.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc-CCCCChHHHHH--hhhHHHHH
Q 001618 520 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLS--LGNWNYFA 596 (1043)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~--lg~~~y~~ 596 (1043)
-+.+....|++.+|.....+++.-.|.+.-++..--.+++-+|+...-...+++++.. ++....++++. ++-. +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 3455677899999999999999999999999999999999999999999999999886 44444444432 1111 222
Q ss_pred HHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHH
Q 001618 597 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 676 (1043)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 676 (1043)
. |.|++|.+.-+++++++|.+.++...++.++...|++.++.++..+--..-..+.. ....-|..-+
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 3 99999999999999999999999999999999999999999998876554322111 1233456678
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhcCCCC
Q 001618 677 HVYFAQGNFALAMKMYQNCLRKFYYNTD 704 (1043)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 704 (1043)
.++...+.|+.|.+.|..-+-.-....|
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 8899999999999999876544334444
No 227
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0095 Score=58.29 Aligned_cols=186 Identities=18% Similarity=0.126 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 001618 344 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 422 (1043)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 422 (1043)
.+++++|..+|.++ +..| ...+|..|-..|.++.....+.+...+....+.-+.-.++.++..+|
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 35777887777765 3445 55677777777777777666655544444444444444566689999
Q ss_pred HHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhc-CChHHHHH
Q 001618 423 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASV 501 (1043)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 501 (1043)
+.++++++++....+ ....-......+|.+|..- .++++|+.
T Consensus 93 v~cL~~aieIyt~~G-------------------------------------rf~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMG-------------------------------------RFTMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred HHHHHHHHHHHHhhh-------------------------------------HHHHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 999998887532110 0111234456788888765 88999999
Q ss_pred HHHHHHHhCcC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHH-------HHHHHHHhhhccchHHHH
Q 001618 502 LYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA-------LSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 502 ~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~ 568 (1043)
+|+++-.-... -..+++..+......+++.+|+..|++.....-+++.+ ++.-|.+++-..+.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 99998764432 24567778888888999999999999988877666543 334566677777877788
Q ss_pred HHHHHhhhcCCC
Q 001618 569 ETFRAASDATDG 580 (1043)
Q Consensus 569 ~~~~~~l~~~~~ 580 (1043)
..+++..+..|.
T Consensus 216 ~ALeky~~~dP~ 227 (288)
T KOG1586|consen 216 RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHhcCCc
Confidence 888888777775
No 228
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.78 E-value=0.00024 Score=66.90 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 132 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 132 (1043)
--|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 356788888888889999999999988887776533 4667777777788888888888888877766542
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
+ .|+. .. ....|++|..+|+++...+|+|......|...
T Consensus 85 l-------------~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 L-------------TPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H----------------H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred h-------------cCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1 1111 00 00124556666666666666666555555444
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.75 E-value=0.00028 Score=66.45 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHH
Q 001618 99 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175 (1043)
Q Consensus 99 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 175 (1043)
|+.|.+.++.....+|.++..++..|.++..+.++.. +.. .+++|+.-|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~----------------------------miedAisK~ 58 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK----------------------------MIEDAISKF 58 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH----------------------------HHHHHHHHH
Confidence 5667777777777777777777776666655433211 111 134566667
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 176 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 176 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
+.+|.++|+...++..+|.++...+. ...+++|..+|+++...+|.+......|-..
T Consensus 59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77777777777777777776666543 1338999999999999999998777666554
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00085 Score=71.66 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
|+.......+.+..+.|..+|.+++...+.+..+|...|.+.+. .++...|..+|+.+++..|.+ ..+|+.....+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
Confidence 33334444444444444444444443333334444444444333 233333444444444444444 3334444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 165 LGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
.|+.+.|+.+|++++..-|... ..|..........|+ .+....+..++....|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence 4444444444444444333322 334444444444444 55555555555555554
No 231
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.68 E-value=0.018 Score=67.89 Aligned_cols=177 Identities=17% Similarity=0.168 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 131 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~~~~~g-- 131 (1043)
....|..+++.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345788888887654 5667777788777654 5789999999988761 1125667888899888753
Q ss_pred ---ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHh
Q 001618 132 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 204 (1043)
Q Consensus 132 ---~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 204 (1043)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..|.. -.+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCC
Confidence 6788999999888776444 4677888888765 56789999998875 45788888888887653 22334
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 001618 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETA 249 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~ 249 (1043)
...|..++.++...+ ++.+...++.++... +.+..+.-.+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 788999999888887 444444444443332 5555544444433
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.0007 Score=77.70 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=118.9
Q ss_pred cCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHc-chhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhH
Q 001618 8 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL-GKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 86 (1043)
Q Consensus 8 ~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~-g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~ 86 (1043)
.|+-+.+.++|..+....- . ...+..+..| ++|... +-... .. .......|..++.......|+.+..+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~---i----~~~la~L~LL-~y~~~~~~~~~~-~~-~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSEN---I----RSPLAALVLL-WYHLVVPSFLGI-DG-EDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred CCcHHHHHHHHHHHhccCC---c----chHHHHHHHH-HHHHHHHHHcCC-cc-cCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4777888899988754321 0 0112222222 233222 11121 11 44567789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
+..|+++...|+.++|+..|+.++..... ....++.++.++..+++|++|..+|.++.+.+.-+.....+..|.|+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99999999999999999999988743222 24567889999999999999999999999988777777888899999
Q ss_pred HHcCCH-------HHHHHHHHHHHh
Q 001618 163 YKLGQL-------GKARQAFQRALQ 180 (1043)
Q Consensus 163 ~~~g~~-------~~A~~~~~~al~ 180 (1043)
..+|+. ++|...|.++-.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 999998 666666655543
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0047 Score=63.43 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=106.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChh--HHHHhHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPG--AIRLGIGLCR 162 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~-~p~~~~--~~~~~lg~~~ 162 (1043)
....+.++..+|++.+|....+++++..|.+..++..--.+++.+|+...-...+.+++.. +|+.|- .+.-.++.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445667778899999999999999999999999888888899999999999999999877 666533 3334577888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
...|-|++|...-.++++++|.+.-+...++.++...++ +.++.+++.+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~t 235 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKT 235 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhc
Confidence 899999999999999999999998888888888888888 88888877654
No 234
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.67 E-value=0.01 Score=65.45 Aligned_cols=118 Identities=11% Similarity=0.082 Sum_probs=95.9
Q ss_pred cCcc-cHHHHHHhHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC
Q 001618 625 QHTS-NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 702 (1043)
Q Consensus 625 ~~P~-~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 702 (1043)
..|. -.|...++|-+| ...|+...|+.++..++...|.. .-....+|+.++...|....|-.++.+++.. ..
T Consensus 600 ~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~ 673 (886)
T KOG4507|consen 600 NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAI--NS 673 (886)
T ss_pred cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cc
Confidence 3444 334444444444 46799999999999999888743 2345779999999999999999999999998 35
Q ss_pred CCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 703 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 703 ~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
..|-..+.+|++++...+.+.|++.|+.|+++.|+++.+.-.|-.+
T Consensus 674 sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 674 SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 5588899999999999999999999999999999999988777665
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0012 Score=70.57 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 688 (1043)
+..+.|..+|.++++..+.+...|...|.+... .++...|..+|+.+++..| .+..+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 669999999999997767677888888888666 5666669999999999998 7889999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 689 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 689 ~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998854433 35688888888888999999999999999999986554
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.012 Score=58.09 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 376 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
....+.++..+|+++..+....|.+.+...-...+--....-+++.|+++|++++.
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 33444445555555444444433333322222222223444566666666666655
No 237
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.17 Score=55.60 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCC-HHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRA 178 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a 178 (1043)
..-..+|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +.+|+..+.-.+..+. .+.|+..|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445678889999999999999998888888888999999999999999999 7889988888887776 89999999999
Q ss_pred HhhCCCcHHHHHHHHHHH
Q 001618 179 LQLDPENVEALVALAVMD 196 (1043)
Q Consensus 179 l~~~p~~~~a~~~la~~~ 196 (1043)
|..+|+++..|...-.+-
T Consensus 167 LR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRME 184 (568)
T ss_pred hhcCCCChHHHHHHHHHH
Confidence 999999998876655443
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00015 Score=52.44 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 125 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~ 125 (1043)
|.+|+.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888888888888888888888888888888888887764
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.013 Score=57.68 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=122.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH------HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001618 153 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA------LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 226 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a------~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 226 (1043)
..+...+.+|....++++|..++.++.+-..+|... +-..+.+...... +.++..+++++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k---lsEvvdl~eKA----------- 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK---LSEVVDLYEKA----------- 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH-----------
Confidence 344555666777777777777777777543333211 1122222222222 44455554444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh---hhHHHH
Q 001618 227 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI---FPYYGL 303 (1043)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~l 303 (1043)
..+|...|..+.|...++++-+. ....++++|+.+|++++..+....... ..+-..
T Consensus 98 ---s~lY~E~GspdtAAmaleKAak~------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 98 ---SELYVECGSPDTAAMALEKAAKA------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred ---HHHHHHhCCcchHHHHHHHHHHH------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34566666666665555555433 334567777777777766443322222 224456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Q 001618 304 GQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQAFIDLGE 373 (1043)
Q Consensus 304 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~ 373 (1043)
+.++.+...+.+|...+.+-... .++....+.....+|+...+|..|...++...++ .|.+..+..+|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 67788888888888777664332 3444455666667777778999999999987664 3667788888888
Q ss_pred HHhcCCHHHHHHHH
Q 001618 374 LLISSDTGAALDAF 387 (1043)
Q Consensus 374 ~~~~~~~~~A~~~~ 387 (1043)
.|..|+.++....+
T Consensus 237 ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AYDEGDIEEIKKVL 250 (308)
T ss_pred HhccCCHHHHHHHH
Confidence 88888888766554
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00058 Score=66.70 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
.-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+.+..++.+|..+ ....+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555666778888888999999889988888888999999988999998888899999998888888888888 88888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
..|+..++++..+...........+...|-.+-...=...++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 88998888888777665444334444444444333333333333
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0012 Score=64.71 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
....|..|+..|.+++.++|..+..|-..+.++++..+++.+.....++++++|+.+.+.+.+|.+......|.+|+..+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34578899999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001618 141 KRALQV 146 (1043)
Q Consensus 141 ~~~l~~ 146 (1043)
+++..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 998665
No 242
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.29 Score=56.16 Aligned_cols=303 Identities=15% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHcCCHHHHHHHHHHHHHHC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHH-hcCC
Q 001618 308 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI-DLGELL-ISSD 379 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~-~~~~ 379 (1043)
+..|+...|.+++.-.+-.. +. ...+++.+|.++...|+- ...++...++...+.+..+- .||.-+ ..|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35788888888887766442 11 236888889888888765 77888877776543322211 112211 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhh
Q 001618 380 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 459 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1043)
.-...|+++..............+-..+|.+....++.+.-..++.-+.+.
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--------------------------- 496 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--------------------------- 496 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh---------------------------
Confidence 223455555554433111111223344555544444443333344333321
Q ss_pred hhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-cC-cHHHHHHHHHHHHHcCChhHHHHHH
Q 001618 460 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QD-YVDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
......--..+|..+...|+-++|..+.++++... |- -....+.++..|...|+...-..++
T Consensus 497 ----------------QHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 497 ----------------QHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ----------------hHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 11222233344555666677778888877776532 21 1234456666777777765544444
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH-HHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 538 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
.-++.--.++..-...++.-+.-..+++....+..-+.+.+..+-.| +-+.||.. +.. .-..+|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa--CAG------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA--CAG------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh--hcC------------CCcHHHH
Confidence 44333222333322233333333445555555555444443332222 33344433 221 2245677
Q ss_pred HHHHHHHccCcccH---HHHHHhHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 617 ELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~---~a~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
.+++.+.. +|.+. .++..+|.+.+++. ++..-.+.|.+++.. ...+....+|-++
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d-------KhEd~~aK~GAil 689 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND-------KHEDGMAKFGAIL 689 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh-------hhhHHHHHHHHHH
Confidence 77777665 55532 35555566655543 333334444444332 2345555555554
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.11 Score=60.00 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
....+..++....... |......+..|+++...|+.++|+..|+.++..-. -..-...+++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3444555565555443 45555666667777777777777777776553111 1122335577888888888888888
Q ss_pred HHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001618 317 LTNFEKVLEIYPDNC-ETLKALGHIYVQLGQI-------EKAQELLRKAAKI 360 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~ 360 (1043)
..+|..+.+.+.-.. -..+..|.++...|+. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888887665443 3445567777777877 8888888877654
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.51 E-value=0.0051 Score=67.21 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=121.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhc
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~ 601 (1043)
.-..+..+...-++..++|+.++|+++.++..|+.- ...-..+|..+|+++++.... .++.. ....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~---- 241 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ---- 241 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh----
Confidence 344566778888888899999999998888877652 233467888888888765322 11111 1000
Q ss_pred ccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 602 KRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 602 ~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
....+-..+...+. -+++...+|.++-+.|+.++|++.|+.+++..|.. ++..++.+|..++
T Consensus 242 -------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~L 305 (539)
T PF04184_consen 242 -------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEAL 305 (539)
T ss_pred -------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHH
Confidence 00011111112222 34566788999999999999999999999888743 4667999999999
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hhc---------------HHHHHHHHHHHHHhCCCCcc
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~-~g~---------------~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+.++.|.++...+.+. ....-+..+.+.+..+....+ .++ -..|.+.+.+|++.+|.-+.
T Consensus 306 Lelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 306 LELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999885552 111112334554544433322 122 12377889999999996643
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.50 E-value=0.0029 Score=69.07 Aligned_cols=163 Identities=14% Similarity=0.144 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------C--CH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------D--NV 117 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----------------------~--~~ 117 (1043)
.+...-++.-.+|+.++|+.+.+|+.++.-. .....+|..+|+++++... . .+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 4455678888899999999999998876531 2235666666666655210 0 13
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVM 195 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~ 195 (1043)
.+...+|.|..+.|+.++|++.|..+++..|. +...++..+..|+..++.+.++...+.+.=.+ -|+.....+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45577888999999999999999999988876 34668889999999999999999988886433 24555555555544
Q ss_pred HHHh-hh------------HHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 196 DLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 196 ~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
..+. ++ ...-..|++.+.++++.||..+..+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 3331 11 11134577888999999998875543
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.014 Score=63.37 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH----cCCChHHHHHHHHHhhh---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001618 514 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 586 (1043)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~ 586 (1043)
++....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.+.|+..+..++.....+++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344455555666777777777777666555 45566677777777777 78888888888887666666677777
Q ss_pred HHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHH
Q 001618 587 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 649 (1043)
Q Consensus 587 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A 649 (1043)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++...|.-.+.
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccc
Confidence 777877 66553321111 11559999999999999996 445555666666666654333
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.047 Score=64.49 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=86.3
Q ss_pred hhHHHHhHHHHHHh----cCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHcCCChH----
Q 001618 479 KVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPN---- 549 (1043)
Q Consensus 479 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~---- 549 (1043)
.+.+.+.++.+|.. ..+...|..+|.++.... .+.+...++.++... +.+..+.-.+.......-..+.
T Consensus 359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~ 436 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAA 436 (552)
T ss_pred ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHH
Confidence 45556666666553 235666777777766655 234444444433222 5555544444333333211111
Q ss_pred HHHHHHHHhhhc----cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 550 ALSMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 550 ~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
.+......+... .+...+...+.++... -...+.+.||.+ |+.. .... .++..|...|..+...
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~a~~~lgd~-y~~g-~g~~-------~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 437 YLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---GNADAILKLGDY-YYYG-LGTG-------RDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHhccccccccccccchhHHHHHHHHHHhc---cCHHHHhhhcce-eeec-CCCC-------CChHHHHHHHHHHHHh
Confidence 111111011111 1334444455444332 255666777777 6655 2211 5678888888888777
Q ss_pred CcccHHHHHHhHHHHHhc---CCchHHHHHHHHHHHHh
Q 001618 626 HTSNLYAANGAGVVLAEK---GQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~---g~~~~A~~~~~~~~~~~ 660 (1043)
. ..+.+++|.++... ..+..|..++.++.+..
T Consensus 505 ~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 505 G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6 77778888887753 12677777777777654
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.44 E-value=0.00032 Score=50.77 Aligned_cols=41 Identities=39% Similarity=0.510 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
+++.+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46667777777777777777777777777777777766654
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.39 E-value=0.17 Score=54.20 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 187 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 187 ~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
.++..++.+++..+......+|...++.+-...|+.+.++..-..+....++.+.+...+.+++....
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44667777787777767777888888887777788777776666666667888888888888876543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.39 E-value=0.11 Score=55.69 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=96.7
Q ss_pred HHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHh
Q 001618 413 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 492 (1043)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 492 (1043)
....|+++.|..++.++-.... ...+ ........++++.|.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~ 47 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLS 47 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999998865310 0000 0011345688999999999
Q ss_pred cC-ChHHHHHHHHHHHHhC----------cCc----HHHHHHHHHHHHHcCChh---HHHHHHHHHHHHcCCChHHHHHH
Q 001618 493 IH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 493 ~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+ +++.|..++++++..- |+. ..++..++.++...+.++ .|..+++.+-...|+.+.++...
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99 9999999999998762 111 446777888888777654 46666777777789988888777
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCC
Q 001618 555 GDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
-.+..+.++.+.+.+.+.+++...+
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcc
Confidence 7777778999999999999988655
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.37 E-value=0.066 Score=59.98 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCCCC
Q 001618 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEF 296 (1043)
Q Consensus 219 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~ 296 (1043)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+. ..... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~-~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN-ID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cc
Confidence 3455677888888999999999998888888764322 222567888888899999999999988888776 22111 00
Q ss_pred hhhHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHH
Q 001618 297 IFPYYGLGQVQLK--LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAF 368 (1043)
Q Consensus 297 ~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~ 368 (1043)
......+...... ............. .....++..+|...... +..+.++..|..++...|....+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 0000000000000 0000000000000 01234555666666555 677777777777777777777777
Q ss_pred HHHHHHH
Q 001618 369 IDLGELL 375 (1043)
Q Consensus 369 ~~la~~~ 375 (1043)
+.+|..+
T Consensus 296 ~~~a~~~ 302 (352)
T PF02259_consen 296 HSWALFN 302 (352)
T ss_pred HHHHHHH
Confidence 7776654
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.015 Score=59.71 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
..-+..+.-....|++..|...|..++...|.+..+.+.++.++...|+.+.|..++..+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 334445555666666666666666666666666666666666666666666666555543
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.041 Score=59.72 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=126.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
..+.+..++-..|....+|+.-+.+.+..-.... -..+..+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~---------------------------------------~~~~~~~ 179 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPT---------------------------------------CDVANQH 179 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc---------------------------------------cchhcch
Confidence 3467777888889999999988888877654210 0123466
Q ss_pred HHHHhHHHHHHh---cCChHHHHHHHHHH-HHhCcCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHHcCCC
Q 001618 481 TVLFNLARLLEQ---IHDTVAASVLYRLI-LFKYQDYVDAYLRLAAIAKAR---------NNLQLSIELVNEALKVNGKY 547 (1043)
Q Consensus 481 ~~~~~la~~~~~---~g~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 547 (1043)
.+.+..|.++.+ .|+.++|+.++..+ ....+.+++++..+|.+|... ...++|+.+|.+++..+|+
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~- 258 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD- 258 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-
Confidence 778888999888 99999999999984 455667899999999987543 2467899999999999964
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhh--------h---cCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAAS--------D---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l--------~---~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
...-.+++.++...|.......-+.++. . ..+..+.+....+..+ .... +++++|.
T Consensus 259 ~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea-~vL~------------~d~~ka~ 325 (374)
T PF13281_consen 259 YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA-SVLA------------GDYEKAI 325 (374)
T ss_pred ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHc------------CCHHHHH
Confidence 4445566666666665322222222211 1 1233455666666666 6666 9999999
Q ss_pred HHHHHHHccCcccHHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~ 635 (1043)
+.+++++...|...+.-.+
T Consensus 326 ~a~e~~~~l~~~~W~l~St 344 (374)
T PF13281_consen 326 QAAEKAFKLKPPAWELEST 344 (374)
T ss_pred HHHHHHhhcCCcchhHHHH
Confidence 9999999998876654433
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.24 E-value=0.38 Score=56.85 Aligned_cols=240 Identities=15% Similarity=0.079 Sum_probs=147.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh-
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 548 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 548 (1043)
.+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|..+.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4445555666777778888888887777654333 133444556677788899999999998888877653
Q ss_pred ----HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH-----HhhhHHHHHHHhhcccChhHHhhh--HHHHHH
Q 001618 549 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKE 617 (1043)
Q Consensus 549 ----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 617 (1043)
.+...+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 366778888888899999988888877764443433221 11222 2222 42 222222
Q ss_pred H----HHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCc-hhHHHhHHHHHHHccCHHHHHHH
Q 001618 618 L----YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQM-PDVWINLAHVYFAQGNFALAMKM 691 (1043)
Q Consensus 618 ~----~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~ 691 (1043)
. +.+-+...|...+.....+.++...-+++.+..-....++.... .+.+.. .-++++|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2 23334445665556555555554443466666555555554321 111111 22335899999999999999999
Q ss_pred HHHHHHHhcCCC---C--HHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 001618 692 YQNCLRKFYYNT---D--AQILLYLARTHYEAEQWQDCKKSLLRA 731 (1043)
Q Consensus 692 ~~~al~~~~~~~---~--~~~l~~la~~~~~~g~~~~A~~~~~ka 731 (1043)
+..+......+. + ..+.......+...|+...|..++.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999888765542 1 122222234456689999998887763
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0054 Score=58.59 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=83.9
Q ss_pred HHHHHHHHHHccCcccHHHH---HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHH
Q 001618 614 KAKELYTRVIVQHTSNLYAA---NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 690 (1043)
Q Consensus 614 ~A~~~~~~~l~~~P~~~~a~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 690 (1043)
+......+....+|.+.++. ..++..+...|++++|+..++.++....++.+ .+-+-.+|+.+.+.+|++++|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444455555666666543 45688888899999999999988764432211 24566788899999999999998
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 691 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 691 ~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+...-.. .=.+.+....|.++...|+..+|+..|++++...+++
T Consensus 148 ~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 148 TLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 86554221 0114556678899999999999999999998887544
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.63 Score=52.96 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=147.3
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-------HHhHHHHHHHHHHHH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-------AAGIRKGMEKMQRAF 216 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-------~~~~~~A~~~~~~al 216 (1043)
++-+|.. ..|..++......-.++-|..+|-+.-. .|. ......|+.++....+ .+.+++|...|-.+-
T Consensus 686 iEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 686 IEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred HhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 3345553 5666677766666666777776665432 111 1122223333222111 233777777765432
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC
Q 001618 217 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 296 (1043)
Q Consensus 217 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 296 (1043)
..+ ....++...|+|-.+.+++..--. ...+.....++..+|..+.....+++|.++|.....
T Consensus 762 rrD--------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 762 RRD--------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred hhh--------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 221 234566778888888777764321 112234467899999999999999999999987653
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001618 297 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376 (1043)
Q Consensus 297 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 376 (1043)
.-+++.+++....|++-. .+...-|++...+-.+|.++...|--++|+..|-+.- .|. + .+..+..
T Consensus 825 ---~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a--Av~tCv~ 890 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A--AVHTCVE 890 (1189)
T ss_pred ---hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H--HHHHHHH
Confidence 345667777777776643 3344458888999999999999999999998886531 221 1 1222335
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 429 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (1043)
..+|.+|.++.++.. .|. ...+....+.-+...++.-+|++...++
T Consensus 891 LnQW~~avelaq~~~--l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ--LPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhcc--chh-----HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 567777776544321 111 1223333444556777788888877766
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.17 E-value=0.33 Score=54.33 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=98.7
Q ss_pred CcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHH-HhcCC--
Q 001618 626 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 702 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~-- 702 (1043)
.......+...+.+..+.|++..|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3446678889999999999999999999999886532211 2678899999999999999999999999888 32211
Q ss_pred ---------------------C-C-------HHHHHHHHHHHHhh------hcHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 703 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 703 ---------------------~-~-------~~~l~~la~~~~~~------g~~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
. . ..++..+|.-.... +..+++...|..+.++.|+....+++.|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 34455555555555 77788899999999999999999999999
Q ss_pred HHHHHHH
Q 001618 748 AMQKFSA 754 (1043)
Q Consensus 748 ~~~~~~~ 754 (1043)
.+.....
T Consensus 301 ~~~~~~~ 307 (352)
T PF02259_consen 301 FNDKLLE 307 (352)
T ss_pred HHHHHHH
Confidence 8644433
No 258
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.14 E-value=0.0006 Score=74.01 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
+..|+.|+..|.+++.++|+.+..+-.++..++..++|..|+.-+.++++.+|....+++..|.+.+..+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCC
Q 001618 142 RALQVHPSC 150 (1043)
Q Consensus 142 ~~l~~~p~~ 150 (1043)
....+.|+.
T Consensus 97 ~~~~l~Pnd 105 (476)
T KOG0376|consen 97 KVKKLAPND 105 (476)
T ss_pred HhhhcCcCc
Confidence 555555555
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.14 E-value=0.00077 Score=73.18 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
-..+..++..+.|+.|+.+|.+++.++|+++..+-..+..+++.++|..|+..+.++++.+|.. ...|+..|.++..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456777788889999999999999999998888888899999999999999999999999988 667888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.+.+|+..|+....+.|+.+.+...+..+..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999998887766665543
No 260
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.13 E-value=0.15 Score=55.17 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+|++..|-+.+..+++..|.+|......+.+....|.|+.|...+.-+-..-..-..+...+-+.++..|+++.|+...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35777788888888999999999999999999999999999999987765554444556666777888999999999998
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
.-++.-.-+. +.+....+...-.+|-++++...|++++.++|...
T Consensus 381 ~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 381 EMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8887665555 33333345556678899999999999999988643
No 261
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0043 Score=60.94 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRD----------NVPALLGQACVEFNRGRYSDSLEFYKRALQ 145 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~----------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~ 145 (1043)
.++...|+-++..|+|.+|...|..++.. .|. ..+.++..+.|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45666788888888888888877776532 232 233455555666666666666666666666
Q ss_pred hCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 146 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
..|.+ ..+++..|.+....=+..+|..-|.++|+++|.
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 66666 445566666666666666666666666666654
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.058 Score=55.46 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH-HH-
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 193 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 193 (1043)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-....+ ..+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHH
Confidence 34556777788889999999999999999999999 788999999999999999999887753221111 11211 11
Q ss_pred -HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHH
Q 001618 194 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 272 (1043)
Q Consensus 194 -~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 272 (1043)
.++..... .. -...+.+.+..+|++..+.+.++..+...|+++.|...+-.++.... ...+..+...+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222221 11 12446666778899999999999999999999988888877776532 22334455555555555
Q ss_pred cCCHHHH
Q 001618 273 KGDYEKA 279 (1043)
Q Consensus 273 ~g~~~~A 279 (1043)
.|.-+.+
T Consensus 285 ~g~~Dp~ 291 (304)
T COG3118 285 FGPADPL 291 (304)
T ss_pred cCCCCHH
Confidence 5533333
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00048 Score=46.31 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 103 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 103 (1043)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 264
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.95 Score=52.20 Aligned_cols=251 Identities=11% Similarity=-0.009 Sum_probs=127.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHcCChh-HHHHHHHHHHHHcCCChH--HHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY-LRLAAIAKARNNLQ-LSIELVNEALKVNGKYPN--ALSML 554 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~--~~~~l 554 (1043)
..-+++.+|.++...|.- ...++...+....+.+..+ ..||.-+..+|.-. +-.+.++..+..+..-.. +-..+
T Consensus 396 EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred ccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 445788888888877764 7778777776554332222 22333344444322 233334444443332221 33344
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccC-cc-cHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS-NLYA 632 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~-~~~a 632 (1043)
|.+.+...+ .+|+.-+...-.........--+.+|.. +... |..+.|-.+.++++.-. |- -..-
T Consensus 474 Gl~mlGt~~-~eaiedm~~Ya~ETQHeki~RGl~vGia-L~~y------------grqe~Ad~lI~el~~dkdpilR~~G 539 (929)
T KOG2062|consen 474 GLLMLGTAN-QEAIEDMLTYAQETQHEKIIRGLAVGIA-LVVY------------GRQEDADPLIKELLRDKDPILRYGG 539 (929)
T ss_pred hhHhhCcCc-HHHHHHHHHHhhhhhHHHHHHHHHHhHH-HHHh------------hhhhhhHHHHHHHhcCCchhhhhhh
Confidence 544444433 3344422222111111111112233333 3344 77778888888887543 32 2234
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 712 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la 712 (1043)
.+.++..|+-.|+...-..++.-++. .++ ++..-..-+|.-+.-..+++.-....+-..+.|...-..-+-..||
T Consensus 540 m~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 540 MYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred HHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHh
Confidence 56778888888887554444443332 221 2222222223333333466666666554444431111244556788
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHH
Q 001618 713 RTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKF 752 (1043)
Q Consensus 713 ~~~~~~g~~~~A~~~~~ka~~~~P~~---~~~~~nla~~~~~~ 752 (1043)
.+|.-.|. .+|+.+++-+.. +|.+ ..+...+|+|+-.+
T Consensus 615 IaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 615 IACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 88888887 678888887765 6765 34555566665333
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.05 E-value=0.0014 Score=44.22 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466677777777777777777777777777764
No 266
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0071 Score=59.43 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
..++..-|.-++..|+|.+|...|..|+..-...... ....... -+.+.....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk-EkP~e~e------------------------W~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK-EKPGEPE------------------------WLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc-cCCCChH------------------------HHHHHHhhhHH
Confidence 3456667888899999999999999988632111100 0000000 00022335678
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (1043)
+.|.+.|+...|++-++++....++..+|.++.+|+..|.+....=+..+|...|.+++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8899999999999999999999999999999999999999999888999999999999999987544
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.97 E-value=0.00082 Score=45.16 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001618 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSL 137 (1043)
Q Consensus 106 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al 137 (1043)
|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
No 268
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.09 Score=52.66 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=144.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 144 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~~l 144 (1043)
.|+++-..++..+|.+..+|..+-.++-..+ ++.+-+.++..++..+|.|..+|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988777666554 6788899999999999999999999988888899988 8899999999
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hh--HHhHHHHHHHHHHHHHhCCC
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NE--AAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~--~~~~~~A~~~~~~al~~~p~ 221 (1043)
..+..+ -.+|-..--|+...+.++.-+.+...+++.+-.|-.+|...-.+.... |- ....+.-+.+..+.+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 566777778888888899999999999998887777776543322221 11 12356677888899999999
Q ss_pred cHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 001618 222 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 250 (1043)
Q Consensus 222 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 250 (1043)
|..+|+.|..++.. .| .+.....++..+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988876 44 1333444444443
No 269
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=2.8 Score=55.28 Aligned_cols=391 Identities=12% Similarity=0.033 Sum_probs=203.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 307 (1043)
.++.+-++.+.|..|..++++-.............++.+-.+|...++++.-..+...-.. . ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~----~sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----D----PSLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----C----ccHHHHHHHH
Confidence 5677778888888888888774211111112223344555578888887776665543111 1 1244445566
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 385 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~ 385 (1043)
...|++..|..+|+++++..|+....+...-...+..|.+...+...+-.....++...-|..++.-- ..++|+.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 67788888888888888888877766666666666667777766665555444444444444444322 4444443322
Q ss_pred HHH-------HHH---HHHHhcCCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhh------
Q 001618 386 AFK-------TAR---TLLKKAGEEVPIEV-----------LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL------ 438 (1043)
Q Consensus 386 ~~~-------~a~---~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 438 (1043)
++. .+. .+.-.......... ..++..+ ...|.|..+..+.-+....+.....
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSAC-SIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 211 000 00000000000000 0011111 1112333444433333322211000
Q ss_pred cccccchhhhhhhhhHHH---------hh--hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHH
Q 001618 439 LDSKTKTYVIDASASMLQ---------FK--DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 507 (1043)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 507 (1043)
.+.... ...+...|... .+ .+.+...+...............+|.+.|++....|.++.|....-.+.
T Consensus 1619 ~s~~~~-s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1619 VSYDED-SANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred cCcccc-ccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 000000 00000001000 00 1111111111111223556788999999999999999999998888777
Q ss_pred HhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CC----------ChH------HHHHHHHHhhhccc--hHHHH
Q 001618 508 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GK----------YPN------ALSMLGDLELKNDD--WVKAK 568 (1043)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~~~------~~~~l~~~~~~~g~--~~~A~ 568 (1043)
+.. -+.++...|..++..|+...|+..+++.+..+ |+ ... +...++...-..++ -..-+
T Consensus 1698 e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~il 1775 (2382)
T KOG0890|consen 1698 ESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDIL 1775 (2382)
T ss_pred hcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 665 46788999999999999999999999999765 22 111 22233333333444 34556
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHH---HHHHHHHHHccCcccHHH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK---AKELYTRVIVQHTSNLYA 632 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~P~~~~a 632 (1043)
+.|..+....+. ....++.+|.. |-......+.+.....|++.. ++-.|.+++..+...++.
T Consensus 1776 k~Y~~~~ail~e-we~~hy~l~~y-y~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1776 KYYHDAKAILPE-WEDKHYHLGKY-YDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHHccc-ccCceeeHHHH-HHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 777888777663 22233345533 333222222233333466666 777777888776555443
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.87 E-value=1.6 Score=51.88 Aligned_cols=276 Identities=17% Similarity=0.063 Sum_probs=164.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc
Q 001618 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 330 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 330 (1043)
+...+.+..-+..+...|...+|+...-.+- +|... ......+.-++..++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 3446677777888888888888887765543 12221 112223333444444433 222333333 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 400 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 400 (1043)
+......+.......++.+|..++.++...-+. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566777788888889999999998887654322 1 12222233444 7899999999999999988876555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
.....+..+|.+..-.|++++|..+...+.+.... .+......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~-------------------------------------~~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ-------------------------------------HDVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH-------------------------------------cccHHHHH
Confidence 55778888999999999999999999988764210 00122344
Q ss_pred HHHHhHHHHHHhcCChHHHH--HHHHHH----HHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----cCCChH-
Q 001618 481 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 549 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~- 549 (1043)
.+.+..+.++..+|+...|. ..|..+ +...|.........+.++...-+++.+..-....+.. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 56666788888888433333 333322 2233332222222222222222244444333333333 233322
Q ss_pred --HHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 550 --ALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 550 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
+.++++.+++..|++++|...+..+....
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23467888888888888888888776644
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.87 E-value=0.002 Score=43.52 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 737 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~ 737 (1043)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666654
No 272
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.87 E-value=1.9 Score=53.41 Aligned_cols=124 Identities=23% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001618 62 EEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 131 (1043)
.+.|+.|+..|+++....|.- -++.+..|..++.+ | .+.+|+..|+... ..|.-|.-+++.|.+|.+.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhh
Confidence 567889999999988888864 35777777777654 3 4777888887653 45667788899999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc----CCHHHHHHHHHHHHhhCCCcH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL----GQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~ 186 (1043)
+|.+-+++|.-+++..|..+...++.--.||... .+-..|....--++..-|...
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999998888544433222222110 122344444455555556543
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.06 Score=51.70 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
.+...++..+...|++++|...++.++....+......+-..++.+++..|.+++|+..+...-.. .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 345667777788888888888888777432222223445667888888888888888777654321 1123345667888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPR 363 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~ 363 (1043)
+...|+..+|+..|.+++...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88888888888888888877643
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.84 E-value=0.0019 Score=43.65 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
.+|+.+|.+++.+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555566666666666666666666655554
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.81 E-value=0.0027 Score=42.81 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
+|+.+|.+++..|++++|+..|++++..+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 276
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=1.7 Score=51.02 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=122.9
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
..+..+.......|.+..-...+++++...+.....|+..+...- .++-...+...+..++...|-...+|...-..+.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 344444455556666666666777777766666666666655432 2333334445555555555554444443332222
Q ss_pred hccc-hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccC--hhHHhhhHHHHHHHHHHHHccCcc-cHHHHHH
Q 001618 560 KNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA--PKLEATHLEKAKELYTRVIVQHTS-NLYAANG 635 (1043)
Q Consensus 560 ~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~--~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~~ 635 (1043)
+.+. ...-...+.+.+...-. +...... |+..--..... -..-+..|..|...|.......-+ ....+..
T Consensus 393 R~re~~~vI~~~l~~~ls~~~~-----l~~~~~~-~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~ 466 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMTVE-----LHNDYLA-YRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQL 466 (881)
T ss_pred hcCcchhhHHHHHHHHHHHHHH-----HHHHHHH-HHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 2221 12222223332221000 0000000 11110000000 001136677788877776665211 2334445
Q ss_pred hHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 001618 636 AGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLAR 713 (1043)
Q Consensus 636 la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~ 713 (1043)
.|.+.+ .+++++.|+.+.+.+..... . .....|+....+-...|+...+..++.+|+..-..+.+ -.++...-+
T Consensus 467 wA~~E~sl~~nmd~~R~iWn~imty~~-~---~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r 542 (881)
T KOG0128|consen 467 WAQVEASLLKNMDKAREIWNFIMTYGG-G---SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRR 542 (881)
T ss_pred HHHHHHHHhhchhhhhHhhhccccCCc-c---hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHH
Confidence 566655 46899999999988876542 1 23337888888888889999999999999876444433 345555555
Q ss_pred HHHhhhcHHHHHH
Q 001618 714 THYEAEQWQDCKK 726 (1043)
Q Consensus 714 ~~~~~g~~~~A~~ 726 (1043)
.....|.++....
T Consensus 543 ~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 543 FEREYGTLESFDL 555 (881)
T ss_pred HHhccccHHHHhh
Confidence 5555566655443
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.76 E-value=0.092 Score=57.34 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
.+.-+.+|++|++.+|.+ ..+++.+-.+.....+.+....-|++++..+|++...|..+-......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345567777777777766 5666666666667777777777788888777777777665554433321111144555555
Q ss_pred HHHHH
Q 001618 213 QRAFE 217 (1043)
Q Consensus 213 ~~al~ 217 (1043)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55443
No 278
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.73 E-value=1.5 Score=54.19 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
..-.++...+.|+.|+..|.++....+.-..-.++.+..|..+..+ | .+.+|+.-|++.. ..+..+.-|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHH
Confidence 3456677778888888888888876655555567788888777643 2 4778888887766 566777779
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Q 001618 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343 (1043)
Q Consensus 301 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 343 (1043)
++.|.+|...|++++-+++|.-+++.+|..+.+-...-.+.++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999887655444444333
No 279
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.11 Score=54.08 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=68.2
Q ss_pred chhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHH
Q 001618 668 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 745 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nl 745 (1043)
.+..|-.-|+-|++..+|..|+..|.+.++.-...++ ..++.+-+-+.+..|++..|+.-+.+++.++|.+.-+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3445556688899999999999999999987444444 66778889999999999999999999999999998887777
Q ss_pred HHHH
Q 001618 746 GVAM 749 (1043)
Q Consensus 746 a~~~ 749 (1043)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 7774
No 280
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=2.2 Score=50.29 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 375 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 375 (1043)
..|..+.......|....-...+++++...+.+...|...+...- .++-...+...+.+++...|-...+|-..-..+
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 345556666667788777777888888777777777776665442 234444555666666666666665554433333
Q ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcchhhhhhcccccchhhh
Q 001618 376 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE------FESAHQSFKDALGDGIWLTLLDSKTKTYVI 448 (1043)
Q Consensus 376 ~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (1043)
..+ ....-...+.+++.. ....++.........++ ++.-...|+.|...
T Consensus 393 R~re~~~vI~~~l~~~ls~--------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~e---------------- 448 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSM--------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEE---------------- 448 (881)
T ss_pred hcCcchhhHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH----------------
Confidence 222 122222222222221 01111111111122222 22222223332221
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH-hcCChHHHHHHHHHHHHhCcCcHH-HHHHHHHHHHH
Q 001618 449 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE-QIHDTVAASVLYRLILFKYQDYVD-AYLRLAAIAKA 526 (1043)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~ 526 (1043)
+...... .-.....++...|.++. .+++.+.+..++..++...-.... .|+....+-..
T Consensus 449 --------------Lt~~~~~-----~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 449 --------------LTELYGD-----QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred --------------HHHHhhh-----hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 0000000 00113344445555543 457888899988887765554444 77777777778
Q ss_pred cCChhHHHHHHHHHHHHcCCC---hHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 527 RNNLQLSIELVNEALKVNGKY---PNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
.|+...+..+++.++..-... ..++..+-.+....|.++.......+
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 899999999888877643222 22444444444555666655554443
No 281
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.56 E-value=1.6 Score=47.64 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=97.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A 171 (1043)
-.+..|+.-.|-..+..++...|..|......+.+....|+|+.++..+.-+-..-... ....-.+-.....+|+++.|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHH
Confidence 34567888889999999999999999999999999999999999998887654443222 12233355667788999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001618 172 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 172 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
...-.-++...-.++++...-+......+- ++++...+.+.+.++|....
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhcc
Confidence 998888887666666666555554455555 89999999999999876443
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=2.3 Score=48.72 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=45.8
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 556 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 556 (1043)
|++...+-.+|.++...|.-++|.+.|-+.- .|.- ....+..++++.+|.++.++.. -|.-..+....+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aa 918 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAA 918 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH
Confidence 4566667777888888888888877665421 1211 1122344556666666554421 1222222333333
Q ss_pred HhhhccchHHHHHHHHHh
Q 001618 557 LELKNDDWVKAKETFRAA 574 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~ 574 (1043)
-++..++..+|++..+++
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 344555666666665554
No 283
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.45 E-value=0.12 Score=57.17 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=104.0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001618 74 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 124 (1043)
Q Consensus 74 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p------------~~---~~a~~~la 124 (1043)
..++.+|.++++++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 446789999999999999999999999999988887531 11 12 23556667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHH
Q 001618 125 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 198 (1043)
Q Consensus 125 ~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 198 (1043)
..+.+.|-+..|+++.+-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7788889999999999999999998 76677777777777888887777776665442111 11334444455554
Q ss_pred hhhH------------HhHHHHHHHHHHHHHhCCCcH
Q 001618 199 ANEA------------AGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 199 ~~~~------------~~~~~A~~~~~~al~~~p~~~ 223 (1043)
.++. ...+.|...+.+++...|...
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 4441 112667777777777766443
No 284
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.42 E-value=0.24 Score=49.71 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHH-hcCC
Q 001618 311 GDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQ-AFIDLGELL-ISSD 379 (1043)
Q Consensus 311 g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-~~~~la~~~-~~~~ 379 (1043)
..+++|+..|.+++.+.+.. ..++..+..++++++++++-...|.+++.. ..+... ....+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 46777888888888776653 346666777888888888888888777642 111111 111111111 3333
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 380 TGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
.+--...|+..+..+... .+.........+|.+|+..|+|..-...+++....|...+--+...
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k--------------- 185 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK--------------- 185 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh---------------
Confidence 444444555555554442 2222344556789999999999998888888777654211110000
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc--HHH----HHHHHHHHHHcCChhH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDA----YLRLAAIAKARNNLQL 532 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~----~~~la~~~~~~g~~~~ 532 (1043)
.......++..-..+|..+.+...-..+|++++.+...- +.. .-.-|.++...|.+++
T Consensus 186 ----------------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 186 ----------------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred ----------------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 111233445555566777777677777777777643321 111 1111233555566666
Q ss_pred HHHHHHHHHHHc
Q 001618 533 SIELVNEALKVN 544 (1043)
Q Consensus 533 A~~~~~~al~~~ 544 (1043)
|...|-.+++..
T Consensus 250 AhTDFFEAFKNY 261 (440)
T KOG1464|consen 250 AHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHHHhcc
Confidence 666665555543
No 285
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.72 Score=46.51 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=40.9
Q ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001618 309 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 381 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 381 (1043)
+...-..|+.+...++..+|.+..+|...-.++..++ +..+-+.++..++..+|.+..+|...-.+. ..|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 3444555666666666666666666655555554443 445555666666666666666665555555 444443
No 286
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.16 Score=48.26 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
.+...+......|+...++..+.+++.....+.-..... ..+- .....+... ...++..++..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~------~~~~~~~l~~~ 71 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL------YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 334446666778888889999988887553221111000 1111 111222222 34577778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-cCCCCcHH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPIE 404 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 404 (1043)
+...|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+.. .+..+++.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999 999999999999999887764 35444443
No 287
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.033 Score=57.62 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
-|+-|+...+|..|+.+|...|+..-. +...|...|-+.+..|+|..|+..+.+++..+|.+ .-+++.-+.|++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhHHHHH
Confidence 355555555555555555555544221 23344555555555555555555555555555555 3444555555555
Q ss_pred cCCHHHHHHHHHHHHhh
Q 001618 165 LGQLGKARQAFQRALQL 181 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~ 181 (1043)
+..+..|..+.+..+++
T Consensus 166 Le~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 55555555555554443
No 288
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.31 E-value=0.47 Score=51.41 Aligned_cols=172 Identities=19% Similarity=0.117 Sum_probs=115.9
Q ss_pred hcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh----ccc
Q 001618 492 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 563 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 563 (1043)
..+.+..|...+..+-.. ....+...++.++... .+...|..+|.. .....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccC
Confidence 446777777777776552 2236677777777654 357789999984 4456678889999999887 458
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhc
Q 001618 564 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 643 (1043)
Q Consensus 564 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~ 643 (1043)
..+|..+|.++......+...+...++.+ |.... ... .-..+...|+..|.++.... ++.+...+|.+|...
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~----~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QAL----AVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhh----cccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999987654334446667766 55541 000 00034457888888877665 566677777777653
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHcc
Q 001618 644 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 683 (1043)
Q Consensus 644 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 683 (1043)
.++.+|..+|.++.+.. + ....++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 37778888888887765 3 66777777 666555
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=7.4 Score=51.65 Aligned_cols=327 Identities=12% Similarity=0.031 Sum_probs=179.4
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHH-HHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA-ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 79 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 79 (1043)
+|++=++-|-|.+|...+|+-...+. +.+.-. .+..|-.+|..++..... .-... ....+
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~-~r~a~ 1449 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSA-RRFAD 1449 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHH-HhhcC
Confidence 35566777788888888887522221 122222 233344467666655411 11111 01223
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 80 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 80 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
| .+..........|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....++........--
T Consensus 1450 ~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1450 P----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGV 1525 (2382)
T ss_pred c----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHH
Confidence 3 455566667778999999999999999999988888888888889999999888777666555554333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh--HHHHHHHHHHHHHhCC--------CcHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALNYL 229 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~--~~~A~~~~~~al~~~p--------~~~~~~~~l 229 (1043)
.+-|.+++++.-..+.. ..+-.+..+.. +|.+.......+. ..+.++..+..+ +.| .....+..+
T Consensus 1526 eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1526 EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHH
Confidence 44588888877665544 12222333321 4554444332111 112232222211 111 001111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCCChhhHHHH
Q 001618 230 ANHFFFTGQHFLVEQLTETALAVTNHG--PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHEFIFPYYGL 303 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~~l 303 (1043)
..++... +.+ ............. ..+..-|.+....-....+..+-+-.+++++-... .......+|+..
T Consensus 1601 ~kLH~l~-el~---~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLLL-ELE---NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHH-HHH---HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 1111000 000 0111111111111 11122222222221222223444444444443221 234567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001618 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361 (1043)
Q Consensus 304 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 361 (1043)
|++....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999888887765 56888899999999999999999999988653
No 290
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=1.1 Score=45.56 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHH
Q 001618 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 483 (1043)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1043)
.+-..++.+++..|.|.+|+......+..-. ..+..+...+++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877665211 111345566677
Q ss_pred HhHHHHHHhcCChHHHHHHHHHHHH-----hCcCcHHHHH--HHHHHHHHcCChhHHHHHHHHHHHHcC---CChHHHHH
Q 001618 484 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVNG---KYPNALSM 553 (1043)
Q Consensus 484 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 553 (1043)
..-..+|....+..++..-+..+-. -+|....+-+ .-|..++.-.+|..|..+|-++++-.. .+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777788888888777776665543 2343333322 223445666788889888888877542 23333333
Q ss_pred HHHHhh---hccchHHHHHHHH--HhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc
Q 001618 554 LGDLEL---KNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628 (1043)
Q Consensus 554 l~~~~~---~~g~~~~A~~~~~--~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 628 (1043)
+-.+.+ ..+..++....+. ..++...+....+....+.. |... ...+|..|+..|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR----------sL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR----------SLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC----------cHhhHHHHHHHhhHHhccCHH
Confidence 222221 1222222222221 22222233334444444433 2211 116778888888777766654
No 291
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.16 E-value=0.28 Score=46.65 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
.+...++..+...|+++.|+..+.+++..+|.+-.++..+..+|...|+...|+..|.++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999998754
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.04 E-value=0.0095 Score=39.72 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
+++++|.+|...|++++|+..|+.++..||
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344444444444445555555444444443
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.02 E-value=0.0085 Score=62.21 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
.+.-.+..|.++.|+..|..++.++|.....+...+.+++.+++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 34556677888888888888888888888888888888888888888888888888888887 55566778888888888
Q ss_pred HHHHHHHHHHHhhCCC
Q 001618 169 GKARQAFQRALQLDPE 184 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~ 184 (1043)
.+|...|..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 8888888888877643
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.92 E-value=0.35 Score=53.44 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 001618 337 LGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413 (1043)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 413 (1043)
....+.+.|-+..|+++.+-++.++|. ++-....+...| ..++++--+..++.............-|...+.++.++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 334444444555555555555555544 443333333333 33444433333332222100000001234566667777
Q ss_pred HHcCCH---------------HHHHHHHHHHHcchh
Q 001618 414 FEKGEF---------------ESAHQSFKDALGDGI 434 (1043)
Q Consensus 414 ~~~g~~---------------~~A~~~~~~al~~~~ 434 (1043)
+..++. +.|...+.+|+..-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 777776 788888888887655
No 295
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.90 E-value=0.64 Score=50.82 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h---cCCHHHHHHHHH
Q 001618 313 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 388 (1043)
Q Consensus 313 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 388 (1043)
.+.-+.+|+++++.+|++..++..+-.+..+....++...-+++++..+|++..+|....... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998877765 2 235778888888
Q ss_pred HHHHHHHhcCCCC-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcch
Q 001618 389 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 389 ~a~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (1043)
+++..+....... -..++..+.......|-.+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888766542221 13566667778889999999999999999864
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.86 E-value=1.3 Score=47.91 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 133 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~----~g~~ 133 (1043)
...+..|...+..+... .++...+.++..|... .+..+|+.+|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 45667778877777552 2335666667666654 35777888888444 34467777778887776 4478
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001618 134 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 205 (1043)
Q Consensus 134 ~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 205 (1043)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++.... +..+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 888888888877754331233566666666531 2236777777766544 666777777666542 323346
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001618 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237 (1043)
Q Consensus 206 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 237 (1043)
.+|...|.++-.... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 777777777776665 55566666 555544
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.84 E-value=0.0047 Score=64.03 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+|.++.|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q 001618 141 KRALQVHPSC 150 (1043)
Q Consensus 141 ~~~l~~~p~~ 150 (1043)
..+.+++-+-
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9998876443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.80 E-value=0.12 Score=48.59 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 163 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~ 163 (1043)
..++....+-+..++.+.+..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3556667777778888888888888888889988888889999999999999999999887777777 666777888888
Q ss_pred HcCCHH
Q 001618 164 KLGQLG 169 (1043)
Q Consensus 164 ~~g~~~ 169 (1043)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888754
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.79 E-value=0.016 Score=39.66 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+|.+||.+|..+|+|++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776644
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.74 E-value=0.017 Score=38.87 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+++.+|.++..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666555
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.73 E-value=0.023 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+++.+|.+++..|++++|+.+|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999999975
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.65 E-value=0.02 Score=38.48 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555544
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.53 E-value=1.2 Score=44.85 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcC
Q 001618 344 LGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKG 417 (1043)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~la~~~~~~g 417 (1043)
...+++|+..|.+++++.+.- ..++-.+..++ ..+++++-+..|.+.+........ ..+....+.+...-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 347899999999999988664 34555666677 899999999999988877665321 122233333333333344
Q ss_pred CHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChH
Q 001618 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 497 (1043)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 497 (1043)
+.+.-..+|+..+..- .... ....-...-..+|.+|...+.+.
T Consensus 120 ~m~LLQ~FYeTTL~AL------------------------------kdAK-------NeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDAL------------------------------KDAK-------NERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHHH------------------------------Hhhh-------cceeeeeccchHhhhheeHHHHH
Confidence 4444444444433310 0000 00001112235788888888888
Q ss_pred HHHHHHHHHHHhCcC------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH--HH----HHHHHHhh
Q 001618 498 AASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--AL----SMLGDLEL 559 (1043)
Q Consensus 498 ~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~----~~l~~~~~ 559 (1043)
.-.++++++-..+.. -...|..-..+|..+.+...-..+|++++.+...-|. +. -.=|.+++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 877777776553321 2445666667788888888888889999887644333 22 23356788
Q ss_pred hccchHHHHHHHHHhhhcCCC
Q 001618 560 KNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
+.|.|++|..-|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 889999999999998886644
No 304
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=1.1 Score=50.45 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 001618 64 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 112 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------- 112 (1043)
-|.+|...|.-+.. ..|.+.+.++.++.++..+|+.+-|..+..++|-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 45566666665543 35777889999999999999988877777666531
Q ss_pred --CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHH-----Hhh
Q 001618 113 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 181 (1043)
Q Consensus 113 --~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~ 181 (1043)
.|.|- .+++.....+.+.|-+..|+++++-++.++|. ++..+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 12232 23344455666789999999999999999998 65555555555555666776666666654 222
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 182 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
-| |...-+.+|.+|+.......-..|...+.+|+...|..
T Consensus 413 ~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 413 LP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred cC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 33 34455667777777665445677888888888888743
No 305
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.45 E-value=0.15 Score=45.69 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.3
Q ss_pred chhHHHhHHHHHHHccC---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 668 MPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
.....|+++|++....+ ..+.+.+++..++..+....-..+++|+..+++.++|+.++.++..+++..|+|+.+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46788999999988754 567888999988732222237889999999999999999999999999999999876443
Q ss_pred HHHH
Q 001618 745 AGVA 748 (1043)
Q Consensus 745 la~~ 748 (1043)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 3333
No 306
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=2.7 Score=47.23 Aligned_cols=244 Identities=14% Similarity=0.085 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC----hHHHHHHHHHhhhccchHHHHHHHH
Q 001618 497 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFR 572 (1043)
Q Consensus 497 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (1043)
....+.+.......|..+...+..+.++...|+.+.|+..++..+. +.. .-.++-+++++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556666678888888888888888888887888888887766 222 2245567888888888999999988
Q ss_pred HhhhcCCCCCh-HHHHHhhhHHHHHHHhhccc---ChhHHhhhHHHHHHHHHHHHccCcccHH-----------------
Q 001618 573 AASDATDGKDS-YATLSLGNWNYFAALRNEKR---APKLEATHLEKAKELYTRVIVQHTSNLY----------------- 631 (1043)
Q Consensus 573 ~~l~~~~~~~~-~~~~~lg~~~y~~~~~~~~~---~~~~~~~~~~~A~~~~~~~l~~~P~~~~----------------- 631 (1043)
.+......+.. |++ ..|-+ |+...+.-.. +.....--.+.+...+..+-+..|-+.+
T Consensus 328 ~L~desdWS~a~Y~Y-fa~cc-~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTY-FAGCC-LLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHhhhhhhHHHHHH-HHHHH-HhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 88776554332 232 22233 4333211110 1111111111222222221122222211
Q ss_pred ---H--HHHhHHHHHhcCCchHHHHHHHHHHHH--hcCCC-CCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC-
Q 001618 632 ---A--ANGAGVVLAEKGQFDVSKDLFTQVQEA--ASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN- 702 (1043)
Q Consensus 632 ---a--~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 702 (1043)
+ +..+ +|.-.|--.-+..-+.++... .|... ..+..-.++.+|.++..+|+...|..+|..++......
T Consensus 406 ~~la~P~~El--~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~ 483 (546)
T KOG3783|consen 406 ILLASPYYEL--AYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT 483 (546)
T ss_pred ccccchHHHH--HHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 1 1222 222222111111122222222 23321 11233456778999999999999999999999654222
Q ss_pred CC----HHHHHHHHHHHHhhhc-HHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 703 TD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 703 ~~----~~~l~~la~~~~~~g~-~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
.+ |.+++.+|..|...|. ..+|..++.+|..... |..+-..|.+
T Consensus 484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~-dY~lenRLh~ 532 (546)
T KOG3783|consen 484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS-DYELENRLHM 532 (546)
T ss_pred cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc-ccchhhHHHH
Confidence 22 8999999999999988 9999999999977653 3344334433
No 307
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.34 E-value=0.11 Score=45.21 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
.|..||.+|+.-.|..|++..+...... . ...-++..-|.++..++....+...+--.+-.++..|.++....|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 3789999999999999999976542211 1 111344455667777766655555666667777777777777777
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 112 (1043)
..+..++.+|.-+-..--|+++....++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777777776666666667777766666654
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.12 Score=59.21 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001618 806 YCKHLLD 812 (1043)
Q Consensus 806 ~~~~~l~ 812 (1043)
.+..+|.
T Consensus 218 ~~qe~La 224 (1064)
T KOG1144|consen 218 AMQEALA 224 (1064)
T ss_pred HHHHHHH
Confidence 3333333
No 309
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.24 E-value=0.27 Score=42.88 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=50.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|.-++..|++-+|+++.+.++...++... .++...|.++..+. ...+..+....+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y----------- 59 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY----------- 59 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH-----------
Confidence 45556666666666666666666655421 33334444443221 111111111111
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 251 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 251 (1043)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++.+.
T Consensus 60 ---Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 60 ---LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred ---HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22344555555555565566666666555555556666655555554
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=0.92 Score=42.74 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 306 (1043)
..+.+....|+...|...|..+-.....+.. .-.+...-+.++...|.|++-....+-.-. +.+|-...+.-.||..
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~--d~n~mR~sArEALglA 176 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLA 176 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC--CCChhHHHHHHHHhHH
Confidence 3344444445555555555444432221111 112223333344444444444333332211 1223333344444555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 001618 307 QLKLGDFRSALTNFEKVL 324 (1043)
Q Consensus 307 ~~~~g~~~~A~~~~~~~l 324 (1043)
-++.|++..|...|..+.
T Consensus 177 a~kagd~a~A~~~F~qia 194 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 555555555555554443
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.04 E-value=0.32 Score=45.75 Aligned_cols=101 Identities=15% Similarity=0.000 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001618 38 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 117 (1043)
Q Consensus 38 ~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 117 (1043)
+..+..+.+.-+..+.. .++..++.-+--..|..+..-+.-|.+++.+|+|.+|+.+|+.+....|..+
T Consensus 10 v~gLie~~~~al~~~~~-----------~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDP-----------DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHccCCh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33444445555555533 4888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+--.++.|++..|+..= ..+-..++...++.
T Consensus 79 ~~kALlA~CL~~~~D~~W-r~~A~evle~~~d~ 110 (160)
T PF09613_consen 79 YAKALLALCLYALGDPSW-RRYADEVLESGADP 110 (160)
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHhcCCCh
Confidence 999999999999988652 22234455555443
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.02 E-value=0.1 Score=39.07 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
..++.+|.++++.|++.+|..+.+.++++.|+|..+.--...|
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998764444443
No 313
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=5.3 Score=40.94 Aligned_cols=274 Identities=15% Similarity=0.121 Sum_probs=142.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhH
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~l 158 (1043)
+.+++-....+++++|+..|.+++...-. ...+.+.++.+|...|++..--......-.. +...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~--------m~~f 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA--------MEDF 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH--------HHHh
Confidence 55666667777777777777777765211 1345566677777777666544333222111 1000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 159 GLCRYKLGQLGKARQAFQRALQLDPE---NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 159 g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
-...-....+..++..|. +.+-...+......-. ..+-..+++.. .-..++.+++.
T Consensus 79 --------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA----~rEkr~fLr~~---------Le~Kli~l~y~ 137 (421)
T COG5159 79 --------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA----DREKRKFLRLE---------LECKLIYLLYK 137 (421)
T ss_pred --------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH----HHHHHHHHHHH---------HHHHHHHHHHh
Confidence 001112233333333333 3222222221111100 11112222222 33457888999
Q ss_pred cCCHHHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCCChhhH--HHHHHHHH
Q 001618 236 TGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFPY--YGLGQVQL 308 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~--~~la~~~~ 308 (1043)
.|.|.+|+.+.+.++.. .+..+.....+..-..+|+...+..++...+..+...... -|....+. +.-|...+
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999998887743 3444566677788888899998888888877766542211 11111221 22344556
Q ss_pred HcCCHHHHHHHHHHHHHHCC---CcHHHHHHHH---HHHHHcCCHHHHHHHHH--HHHH-hCCCCHHHHHHHHHHH---h
Q 001618 309 KLGDFRSALTNFEKVLEIYP---DNCETLKALG---HIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFIDLGELL---I 376 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la---~~~~~~g~~~~A~~~~~--~~l~-~~p~~~~~~~~la~~~---~ 376 (1043)
...+|.-|..+|-.+++-.. .+..+...+- ..-...+..++...++. ..++ .+.....+....+..+ .
T Consensus 218 dd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRs 297 (421)
T COG5159 218 DDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRS 297 (421)
T ss_pred ccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCc
Confidence 67789999999988887542 2333332222 22222344444433332 2222 2344566777777777 2
Q ss_pred cCCHHHHHHHHHH
Q 001618 377 SSDTGAALDAFKT 389 (1043)
Q Consensus 377 ~~~~~~A~~~~~~ 389 (1043)
..++..|+..|..
T Consensus 298 L~df~~aL~qY~~ 310 (421)
T COG5159 298 LKDFSDALAQYSD 310 (421)
T ss_pred HhhHHHHHHHhhH
Confidence 3456666665543
No 314
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=8.8 Score=43.37 Aligned_cols=254 Identities=17% Similarity=0.126 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 206 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
....+.+.......|+++......+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445556666677888888888888888888887777777777664 111122334567778888888888888888887
Q ss_pred HHHhcCCCCCChhh-HHH-HHHHHHH--------cCCHHHHHHHHHHH---HHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 286 SVKEINKPHEFIFP-YYG-LGQVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 352 (1043)
Q Consensus 286 a~~~~~~~~~~~~~-~~~-la~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 352 (1043)
..+. .+...+ |.. .|.++.. .|+-+.|-.+++.. +...|.+..+-... ..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~---------~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI---------VRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH---------HHHHHH
Confidence 7752 222222 222 2233321 23444443333322 22222221110000 011111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCCHHHHHHH
Q 001618 353 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQS 425 (1043)
Q Consensus 353 ~~~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~ 425 (1043)
+-.+.- .++..+. .++.++.++ ......+..+ +. +....+... ..+ .-.+..+|.++...|+...|..+
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k-~~-~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEK-MR-AELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHHH-HH-HHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111110 1111111 234444444 1222222221 11 111122222 222 23445679999999999999999
Q ss_pred HHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCC-hHHHHHHHH
Q 001618 426 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYR 504 (1043)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 504 (1043)
|...++... .......-.|.++|.+|.++...+. ..++..++.
T Consensus 472 f~i~~~~e~------------------------------------~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~ 515 (546)
T KOG3783|consen 472 FKIQVEKES------------------------------------KRTEDLWAVPFALYELALLYWDLGGGLKEARALLL 515 (546)
T ss_pred HHHHHHHHH------------------------------------hhccccccccHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998875310 0001334567899999999999988 899999999
Q ss_pred HHHHhCcCc
Q 001618 505 LILFKYQDY 513 (1043)
Q Consensus 505 ~~l~~~p~~ 513 (1043)
++-.-..++
T Consensus 516 kAr~~~~dY 524 (546)
T KOG3783|consen 516 KAREYASDY 524 (546)
T ss_pred HHHhhcccc
Confidence 988766544
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.81 E-value=0.26 Score=41.91 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHhHHHHHHHcC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~~lg~~~~~~g 166 (1043)
+..++..+..+|++..+.+.+|..++..|++++|+..+-.++..+|.. ....+-.+-.++..+|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 344555555566666666666666666666666666666555555443 2233333334443333
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.74 E-value=0.13 Score=38.39 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
.++.+|..++++|+|..|+.+.+.+|++.|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777777777777777777777777777766554443
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.74 E-value=0.3 Score=49.47 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=48.0
Q ss_pred chhHHHhHHHHHHHccCHHHHHHHHHHHHHHh-------cCCC----CHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 668 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-------YYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
.+.++..+||+|..+|+......++++|+..| ..+. ...+++.+|...++.|++++|+++|.+++...-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35677778888888887555444444444433 2211 167888899999999999999999998877643
No 318
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=6.8 Score=41.36 Aligned_cols=169 Identities=11% Similarity=0.063 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCc--h
Q 001618 191 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTK--S 260 (1043)
Q Consensus 191 ~la~~~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~--~ 260 (1043)
.|..+|...++ |.+|+......+. ++ +.-..+...-...|+...+..+|...+..+....+. .|.. +
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 34455555555 6666665544433 22 122344444555666666666666555555433221 1111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHHCCCcHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 335 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 335 (1043)
..-..-|..+....+|..|..+|-++.+.+........+ +-.+-.+-+..+..++.-.++ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 122233455555567777777777776644332222222 222233334455555433333 334444444566666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001618 336 ALGHIYVQL--GQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 336 ~la~~~~~~--g~~~~A~~~~~~~l~~~p 362 (1043)
..+.++.+. .+|..|+..|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666665543 356666666666554443
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.55 E-value=0.5 Score=42.48 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001618 116 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g---~~~~Al~~~~~~l~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 191 (1043)
.....+.+|.++.... +..+.+.+++.++. ..|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3566777788877654 46678888888886 5677666777888999999999999999999999999988877554
Q ss_pred HHH
Q 001618 192 LAV 194 (1043)
Q Consensus 192 la~ 194 (1043)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 333
No 320
>PRK12798 chemotaxis protein; Reviewed
Probab=94.45 E-value=3.6 Score=45.11 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=134.1
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHH
Q 001618 537 VNEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 615 (1043)
Q Consensus 537 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 615 (1043)
++.++..++. +.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|
T Consensus 100 lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~A 167 (421)
T PRK12798 100 LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATA 167 (421)
T ss_pred HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHH
Confidence 4444445543 445555666667778999999999887765554445555555544423333 789999
Q ss_pred HHHHHHHHccCcccHH---HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHH
Q 001618 616 KELYTRVIVQHTSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 692 (1043)
Q Consensus 616 ~~~~~~~l~~~P~~~~---a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 692 (1043)
+.+|+.+--.-|.... ++-.-..+....|+.+++..+-.+.+..+..|++..+..-.|-.+.+-+. .+. -...+
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l 244 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARL 244 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHH
Confidence 9999999888898442 33444555678999999999999999999877776544444444433332 222 22336
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001618 693 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751 (1043)
Q Consensus 693 ~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~ 751 (1043)
..++..+.......+|..+++.-.-.|+..-|.-.-.+++.+... ...-...+.+|+.
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRG 302 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHH
Confidence 667776543444789999999999999999999999999999743 3333455565643
No 321
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=8.2 Score=40.77 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=156.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEA--DRDN--------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
.+..+.......++++++..|..++.. .|.+ ..+.+.++.++...|++.+-..+....-. ++
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp--------f~ 78 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP--------FL 78 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH--------HH
Confidence 355666666777788888888888763 2222 24567777778888877765555544321 11
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLD---PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
..++. ..|....+..+... |++...-..+..-...- .-.+-..++++. .-..++.+
T Consensus 79 ~~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeW----A~~ekRtFLRq~---------Learli~L 137 (411)
T KOG1463|consen 79 SSVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEW----AKREKRTFLRQS---------LEARLIRL 137 (411)
T ss_pred HHhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHH----HHHHhHHHHHHH---------HHHHHHHH
Confidence 11111 12222222222222 22221111111100000 011222233333 23467889
Q ss_pred HHhcCCHHHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCCC-hhhHHHHHH
Q 001618 233 FFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEF-IFPYYGLGQ 305 (1043)
Q Consensus 233 ~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~-~~~~~~la~ 305 (1043)
|+..++|.+|+.+...++.. .+..+...+.+..-..+|+...+..+|...+..+....+. +|.. ...-+.-|.
T Consensus 138 y~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGI 217 (411)
T KOG1463|consen 138 YNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGI 217 (411)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccc
Confidence 99999999999998888753 3334455667777888999999999999888877653211 1111 111223355
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCC---CcH---HHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH--
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYP---DNC---ETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDLGELL-- 375 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~~la~~~-- 375 (1043)
++....+|..|..+|-.+++-+. +.+ ..+..+..+-...+..++.-.++ +.+++....+..+...++..+
T Consensus 218 lha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~n 297 (411)
T KOG1463|consen 218 LHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGN 297 (411)
T ss_pred eeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcC
Confidence 55666899999999988887532 122 33444445555566666655444 345566677788888888888
Q ss_pred -hcCCHHHHHHHHHHH
Q 001618 376 -ISSDTGAALDAFKTA 390 (1043)
Q Consensus 376 -~~~~~~~A~~~~~~a 390 (1043)
...++..|+.-|..-
T Consensus 298 RSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 298 RSLKDFEKALADYKKE 313 (411)
T ss_pred CcHHHHHHHHHHhHHH
Confidence 234566666665543
No 322
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.34 E-value=0.41 Score=40.76 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChH
Q 001618 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~ 134 (1043)
.+..+...+..+|.+..+.+.+|..++..|+++.|+..|-.++..++.. ..+...+-.++-..|.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4667788899999999999999999999999999999999999998765 444444444554555433
No 323
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=94.24 E-value=0.001 Score=49.97 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-----hccCch
Q 001618 860 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 888 (1043)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~e~w-----~~~~~~ 888 (1043)
++.++.++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34555669999999999999999 888875
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.18 E-value=8.1 Score=40.40 Aligned_cols=118 Identities=15% Similarity=0.022 Sum_probs=74.5
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
+.+....|+..+...-+..-..+++++|.+..+++.|+.-.... ..+|..+|+++++....... .......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~yr----~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIYR----QSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHHh----hHHHHhh
Confidence 45666777888888888888899999999999999888654444 67788888888765422111 1111111
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001618 236 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 290 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 290 (1043)
.|...+|. .+. ........-..++.+..++|+..+|++.++...+.+
T Consensus 259 ~~~~~da~------~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~ 305 (556)
T KOG3807|consen 259 QSPQHEAQ------LRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF 305 (556)
T ss_pred hccchhhh------hhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 11111111 100 011122345567888889999999999998887643
No 325
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.03 E-value=0.1 Score=35.62 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKI 108 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~ 108 (1043)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 326
>PRK10941 hypothetical protein; Provisional
Probab=94.01 E-value=0.41 Score=50.14 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
+-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 44556666777777777777777777777666667777777777777777777777766666
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.95 E-value=1.5 Score=40.54 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.++......+..++++++..++..+--..|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHh
Confidence 344445555568888888888888888889888888888999999999999999998887777666 5566778888888
Q ss_pred cCCHH
Q 001618 165 LGQLG 169 (1043)
Q Consensus 165 ~g~~~ 169 (1043)
+|+..
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 87753
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.92 E-value=1.9 Score=37.84 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=67.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC----CC-
Q 001618 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN----TD- 704 (1043)
Q Consensus 637 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~- 704 (1043)
|.-....|.|.+|...+.++.+....-+.. -+.-++..|+..+..+|+|++++..-..++..|... .+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 444455677888888888877764211100 034466677888999999999999999999988532 22
Q ss_pred HH----HHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 705 AQ----ILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 705 ~~----~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
.. +.+.-+.++-..|+.++|++.|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 3456678888899999999999988654
No 329
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.81 E-value=14 Score=42.33 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=15.6
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRL 505 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 505 (1043)
...+++..|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 344555666666666666666655544
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=6.2 Score=37.43 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHHH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 163 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~~ 163 (1043)
-+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455566666666666665544332 3344556666666677777777776665544322 1234455555556
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 164 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 164 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
..|-|+.-..-.+-.- ..+|-...+.-.||....+.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 6666655444333221 1122233444455555555555 5555555554443
No 331
>PRK10941 hypothetical protein; Provisional
Probab=93.63 E-value=0.63 Score=48.79 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 300 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999988766554443
No 332
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.61 E-value=0.091 Score=53.57 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
..+.-....|+.++|..+|+.++...|.++.++...|...-..++.-+|-.+|-+++.++|.+ ..++.+.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n-seALvnR~ 191 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN-SEALVNRA 191 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc-hHHHhhhh
Confidence 344555677888888888888888888888888888888887888888888888888888887 33344333
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=21 Score=42.54 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 308 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 308 (1043)
-..+++....|.-|+.+...--. ............|..++..|++++|...|-+.+..+. |.. ...-+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~------Vi~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSE------VIKKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHH------HHHHhc
Confidence 34556666677777766654321 1122345677788999999999999999988885321 111 112223
Q ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 001618 309 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 388 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~ 388 (1043)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.++..+.- ...-..+.-..+-.++..+-.++|.-+
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L-- 485 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL-- 485 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH--
Confidence 44445555566666666655566666778889999999877655544321 000000111111111233333333222
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 389 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 428 (1043)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (1043)
....+. .. ..+-.++...++|++|+.++..
T Consensus 486 -----A~k~~~--he---~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 -----ATKFKK--HE---WVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred -----HHHhcc--CH---HHHHHHHHHhcCHHHHHHHHhc
Confidence 111111 11 1234556778999999999865
No 334
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.24 E-value=0.24 Score=50.70 Aligned_cols=65 Identities=31% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
....|+.++|...|+.++.++|.+++++..+|.+....++ +-+|-.+|-+++.++|.+..++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCchHHHhhh
Confidence 4455666666666666666666666666666666555555 6666666666666666666555443
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.22 E-value=0.52 Score=46.21 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
.++..+|.+|...|+.+.|++.|.++...........+.++.+.++.+..+++.....++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666666654444344455666666666666666666666666554
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.17 E-value=2 Score=43.61 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHH
Q 001618 378 SDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 455 (1043)
Q Consensus 378 ~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (1043)
..++.|+..|.-++-.....+... ...++..++++|...|+.+....++++|+....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~--------------------- 149 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE--------------------- 149 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH---------------------
Confidence 345566666655554433222222 256777889999999987777777766665311
Q ss_pred HhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC
Q 001618 456 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 510 (1043)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 510 (1043)
..+.. .......-+...+++.+|.+..+.|++++|..+|.+++...
T Consensus 150 --------~a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 150 --------EAYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred --------HHHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 00000 00000122456788899999999999999999999988743
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=1.1 Score=41.51 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001618 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 134 (1043)
+.++..++..+--..|+.+..-..-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3488888888878889999999999999999999999999999999988888988899999999988854
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.06 E-value=13 Score=39.03 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=69.7
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHH--HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 553 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (1043)
...++.++..+|..|.+.|++.+|..+|-.. ++...... +..... ..-.|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~---------------~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWS---------------TKGYPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHH---------------HHTSS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHH---------------HhcCCcchhHHHH
Confidence 3467899999999999999998888776432 22222111 111122 2233444455444
Q ss_pred HHH-HhhhccchHHHHHHHHHhhhc----CCC--------CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH
Q 001618 554 LGD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 620 (1043)
Q Consensus 554 l~~-~~~~~g~~~~A~~~~~~~l~~----~~~--------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 620 (1043)
.+. .|+..++...|...+...++. +|. +..+.+++.... ......... ...+..-.+.|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhC
Confidence 444 356678888888777666554 221 122333333333 222211111 134555555666
Q ss_pred HHHccCcccHHHHHHhHHHHHh
Q 001618 621 RVIVQHTSNLYAANGAGVVLAE 642 (1043)
Q Consensus 621 ~~l~~~P~~~~a~~~la~~~~~ 642 (1043)
..|+.+|.-...+..+|.+|..
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 6666667666677777777764
No 339
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.06 E-value=0.92 Score=44.51 Aligned_cols=103 Identities=10% Similarity=0.180 Sum_probs=82.5
Q ss_pred HHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HH
Q 001618 631 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 706 (1043)
Q Consensus 631 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 706 (1043)
.++..+|..|.+.|+++.|+..|.++++...++. ...++++++..+.+..|++.....+..++-.......+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678899999999999999999999988764322 35688899999999999999999999998877655444 33
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 735 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~ 735 (1043)
+-.+-|..++..++|..|...|-.+..-.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 44566778888999999988887665444
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.49 E-value=0.21 Score=32.29 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 114 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 114 (1043)
+++.+|.++...|+++.|+..|..++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555444
No 341
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.23 E-value=10 Score=43.36 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
+.+..++..+.....+.-|.++|.++-. .-.+.+++...+++.+|..+.++.-+.- +.+++-.|+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqw 813 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQW 813 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHH
Confidence 4444455555555555555555555432 2233445555566666655544432221 2344444454
Q ss_pred HHHcCCHHHHHHHHHHH
Q 001618 341 YVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~ 357 (1043)
+....++++|.+.|.++
T Consensus 814 LAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 55555555555555444
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.13 E-value=0.25 Score=31.97 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+++++|.++..+|++..|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555544
No 343
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=7.9 Score=43.91 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHh------------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc----------------
Q 001618 493 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 544 (1043)
Q Consensus 493 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 544 (1043)
...|++|...|.-+... +|-+++.++.++.++..+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34456666666655543 45568899999999999999988888877765421
Q ss_pred -----CCChH---HHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 545 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 545 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
|.+-. +++.....+.+.|=|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2223333445678899999999999999999899888888877 54432 5566666
Q ss_pred HHHHHH-----HccCcccHHHHHHhHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001618 617 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 617 ~~~~~~-----l~~~P~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 661 (1043)
++++.. +..-|+-.+. ..+|..|.+... -..|+..+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666554 3334554332 355666666554 5778889999988776
No 344
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.93 E-value=18 Score=38.02 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=50.2
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcC---CCCHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY---NTDAQILL 709 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~l~ 709 (1043)
-..|+.|-.+.|+..+|+..|+......|-. ....++.||...++...-|...... +.++.+ |..+.+-+
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNLiEalLE~QAYADvqav----LakYDdislPkSA~icY 350 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENLLEALLELQAYADVQAV----LAKYDDISLPKSAAICY 350 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHhhccccCcchHHHHH
Confidence 3455666666677777777776666554411 2334455555555544433333222 333211 11122222
Q ss_pred HHHHH-------------HHhhhc---HHHHHHHHHHHHHhCCCCcchh
Q 001618 710 YLART-------------HYEAEQ---WQDCKKSLLRAIHLAPSNYTLR 742 (1043)
Q Consensus 710 ~la~~-------------~~~~g~---~~~A~~~~~ka~~~~P~~~~~~ 742 (1043)
..+.. -.+.|- -..|++...++++.+|.-|...
T Consensus 351 TaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 351 TAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 11111 111111 1238888999999999776553
No 345
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.92 E-value=8.4 Score=34.01 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSC-----------PGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
|.-.+.-|-|.+|..-+.++.....+. ...++..++..+..+|+|++++..-.++|
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444556678888888888887764322 23456667777777888777766544443
No 346
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.59 E-value=1.3 Score=38.27 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.7
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001618 641 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 705 (1043)
Q Consensus 641 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 705 (1043)
...|++..|++.+.+..+....+.... ...+.+++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 467888888888888887765432211 24567788888888899999999998888887666663
No 347
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.05 E-value=0.61 Score=47.99 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHh-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 106 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
|.+.....|+++..|...+.-..+.|-|.+--.+|.+++..+|.+ ..+|.. .+.-+...++++.++..|.+++..+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 344445567788888888777777888888888888888888888 566665 555667778888888888888888888
Q ss_pred cHHHHHHHHHH
Q 001618 185 NVEALVALAVM 195 (1043)
Q Consensus 185 ~~~a~~~la~~ 195 (1043)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 88777655443
No 348
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.00 E-value=43 Score=40.42 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-Hh
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI 376 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~ 376 (1043)
.++..-....+.+.|...+........-+. .+...++.-....+...+|...+..+.....+. ..+-....+ +.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHH
Confidence 344445566777888888887655443222 233444444444333567777777654332222 222222223 27
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
.++++.....+..+-... .......+-+|..+...|+.++|..+|+++..
T Consensus 325 ~~dw~~~~~~i~~L~~~~-----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 788887766665532211 12467888899998899999999999999855
No 349
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.00 E-value=0.36 Score=49.59 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
|.++....|+++..|...+......|.|.+--..|.++++.+|.|+..|.. -+.-+.-.+++..+..+|.++++.+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445568899999999988889999999999999999999999999977 5666778899999999999999999999
Q ss_pred hhHHHH
Q 001618 151 PGAIRL 156 (1043)
Q Consensus 151 ~~~~~~ 156 (1043)
+.+|+
T Consensus 176 -p~iw~ 180 (435)
T COG5191 176 -PRIWI 180 (435)
T ss_pred -chHHH
Confidence 45454
No 350
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=8.8 Score=43.78 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHH-HH
Q 001618 103 SSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-AL 179 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al 179 (1043)
+..+...+..+|.++..++.. ...+...+....+.-.+..++..+|.+ ..++..++......|....+...+.. +.
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333444444433222 333344444545555555555555554 23344444444444444444433333 44
Q ss_pred hhCCCcHHHHHHH------HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 180 QLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 180 ~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
...|.+......+ +.+....+. ..++...+.+++...|.++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHh
Confidence 4455544443333 333333333 44444444455555555544333
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.39 E-value=49 Score=39.99 Aligned_cols=73 Identities=8% Similarity=-0.005 Sum_probs=46.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001618 71 YYNKASRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147 (1043)
Q Consensus 71 ~~~~a~~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~ 147 (1043)
-+...+..+|+.|..-........ ..+++..-+.+ ....|.+.......+......|+-.+|......+....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 344456667877766555544333 34455544442 22347777777777888888999888877777766554
No 352
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.34 E-value=0.7 Score=51.09 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
......|.-.+..+....|+..|.+++...|.....+...|.++++. |+.-.|+.....+++++|.. ..+++.++.
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~ 453 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLAR 453 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHH
Confidence 33344444445555677788888888888888888887777777765 45556777777777888777 566788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
++..++++.+|+.+...+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 8888888888888777776666643
No 353
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=6.8 Score=44.64 Aligned_cols=127 Identities=23% Similarity=0.163 Sum_probs=98.7
Q ss_pred HHHHHHHHhhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001618 68 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 144 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-~l 144 (1043)
++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++......|..-.++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5666666667888888775554 66666778888999999999999999999999999988888777766666655 77
Q ss_pred HhCCCChhHHH------HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 145 QVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 145 ~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
...|.+ ..+. +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777887 3322 3358888888999999999999999999987665555544
No 354
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.11 E-value=0.41 Score=47.16 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=32.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 127 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
....++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344455555555555555555555 4445555555555555555555555555555543
No 355
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=41 Score=38.23 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCc-ch--hhhhhc-cHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 001618 3 REYFKQGKVEQFRQILEEGSSP-EI--DEYYAD-VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 78 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~-~~--~~~~~~-~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 78 (1043)
..||..|.|++|+...-++-.. .+ ..+|.. --+.++.++..+..-...-|....-.. . -.-+++.+...
T Consensus 67 KvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~----~---l~~v~e~i~~k 139 (926)
T COG5116 67 KVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDR----I---LDFVLEVIGAK 139 (926)
T ss_pred HHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchH----H---HHHHHHHHHHH
Confidence 6899999999999987665431 11 112222 122333333333222222222110001 1 11122222222
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~ 156 (1043)
.-.+...-+.+|.... |. -+..++.++....+. ...++.++........+. -+++...+...|..+.--++
T Consensus 140 c~~~se~~~~lgIa~e--g~---rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr--~~ilr~l~~~~~~~~~pdyf 212 (926)
T COG5116 140 CVDDSEIGYLLGIAAE--GL---RLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFR--KEILRMLAEIGPGKPKPDYF 212 (926)
T ss_pred HhhHHHHHHHHHHHHH--HH---HHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHH--HHHHHHHHHhcCCCCCCcEE
Confidence 2223333333443321 11 133444555443222 234455555544433333 24566667777766444578
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
.++.|+..+++...|...+.+..+.+.
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 899999999999999999999877543
No 356
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.06 E-value=53 Score=38.56 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=12.3
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhc
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
+++..++..-|.|.+ |.++....|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 344445555555543 555555544
No 357
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.02 E-value=0.76 Score=45.36 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=50.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567888888888888888888888888888888888888888888888888888887
No 358
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.96 E-value=0.18 Score=58.62 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHcCCHHHHH
Q 001618 153 AIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~ 172 (1043)
...+++..|++..|-...+.
T Consensus 407 ~~~~g~s~cly~~~~~q~~m 426 (1516)
T KOG1832|consen 407 ETFYGLSSCLYTIGSLQGIM 426 (1516)
T ss_pred hhhhhHHHHHHHHhhhhhHH
Confidence 44566666666666555444
No 359
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.96 E-value=0.84 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
.++.++|.+|..+|++.+|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466788888888888888888888887764
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.72 E-value=2.6 Score=34.21 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred HhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhhcHHHHHHHHHH
Q 001618 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 730 (1043)
Q Consensus 673 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~k 730 (1043)
..-|.-++.+.+..+|+..+.+++++.+.+++ ..++-+|..+|...|++.+.+.+.-.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999999776665 67777888999999999997776533
No 361
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=88.65 E-value=10 Score=44.35 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001618 811 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQK 852 (1043)
Q Consensus 811 l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1043)
++.++..+...+++|++ ..|.++.+..++++++++++++.+
T Consensus 216 v~~~qe~La~~qe~eE~-qkreeEE~~r~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEER-QKREEEERLRREEEEERRREEEEA 256 (1064)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544433322 233333333344444444444443
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.64 E-value=4.4 Score=32.95 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001618 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216 (1043)
Q Consensus 155 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 216 (1043)
.+.-|.-++...+..+|+..|.++++..++...-+..||.+.....+.|.+.+.+.+...-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677778888888888888877777777777766555555444777666554433
No 363
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.42 E-value=44 Score=36.76 Aligned_cols=262 Identities=13% Similarity=0.017 Sum_probs=132.5
Q ss_pred HHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhh---------------hhhhhHHHHHHHHH
Q 001618 5 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE---------------TKQREKEEHFILAT 69 (1043)
Q Consensus 5 y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~---------------~~~~~r~~~~~~A~ 69 (1043)
...+|.+.++.-+.+.+.+..++- ++.-+. -+..|..+|-...-.. +...=++|...+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~v----S~kvq~-~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-- 197 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDV----SEKVQL-ELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-- 197 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCC----CHHHHH-HHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH--
Confidence 345677777777777765443211 111222 2444555554332211 011123343333
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHh-
Q 001618 70 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQA-CVEFNRGRYSDSLEFYKRALQV- 146 (1043)
Q Consensus 70 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la-~~~~~~g~~~~Al~~~~~~l~~- 146 (1043)
+|- +.-|..+..+..+..-+.+--..+.|..+|+..-.... -...++.++. .+-+..| .++...++..
T Consensus 198 -L~~---E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 -LLF---ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQK 268 (625)
T ss_pred -HHH---hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhh
Confidence 333 34465555555444334444678889999987754332 2334444332 2223333 5666666655
Q ss_pred -CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--
Q 001618 147 -HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE-- 217 (1043)
Q Consensus 147 -~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~-- 217 (1043)
.|+. ..+..+-.|..+.|+++.|+..+.+++. .+|.-...++. .....+.++. ..-+...+..+..
T Consensus 269 m~Pnl--~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~i-ik~f~re~dp--~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 MTPNL--FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLI-IKNFKRESDP--QKVASSWINDIQNSL 343 (625)
T ss_pred cCCch--HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHH-HHHhcccCCc--hhhhHHHHHHHHHhh
Confidence 4665 6678899999999999999998887764 35654444333 3344444431 2234444443332
Q ss_pred -------hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCc---hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 218 -------IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTK---SHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 218 -------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
..|.+.........++....+..-|.++..-.-...+- .+.. ...+..+-.+.+.....+.-+..|..
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444445777777666665443321110 0111 11222333444455556666666665
Q ss_pred HH
Q 001618 286 SV 287 (1043)
Q Consensus 286 a~ 287 (1043)
++
T Consensus 424 lV 425 (625)
T KOG4422|consen 424 LV 425 (625)
T ss_pred hc
Confidence 55
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.01 E-value=10 Score=41.24 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 121 LGQACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 121 ~~la~~~~~~g~~~~Al~~~~~~l~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+.-|..++++++|..|..-|..+|.+. |.. ...+--.+..||..+++.+.|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 444566777777777777777777652 111 122344688899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001618 184 ENVEALVALAVMDLQANEAAGIRKGMEK 211 (1043)
Q Consensus 184 ~~~~a~~~la~~~~~~~~~~~~~~A~~~ 211 (1043)
.+...++..|.++....+ |.+|-..
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHH
Confidence 988888888888887776 6665543
No 365
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=40 Score=37.00 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001618 66 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 132 (1043)
Q Consensus 66 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~- 132 (1043)
..++.+=.+.+..+|....+|...-.++.. ..-++.-+.+...++..+|+...+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777778888899887777664333322 1235666777888899999999999999998887764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHh---HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------hh-
Q 001618 133 -YSDSLEFYKRALQVHPSCPGAIRLG---IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 201 (1043)
Q Consensus 133 -~~~Al~~~~~~l~~~p~~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 201 (1043)
+..=+.++.++++.+|.+.....+. .+..-.......+=+.+..+++..++.|..+|.....+.... |.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788899999999999873222222 122222222355667778888888888888888877766532 10
Q ss_pred --HHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 202 --AAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 202 --~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
..-...-+.....++-.+|.+..+|++
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122445556666677777777766665
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=48 Score=36.25 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCCCChh
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTN---HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIF 298 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~ 298 (1043)
...|+.+...|-..|+......++...+.... .....+....++-+.|...+.|+.|-....+..- ....+.....
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 34566666667777776666666655554321 2233455567777888888888888777766541 0001123344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 330 (1043)
..+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 56677888888888888888888888888863
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.31 E-value=31 Score=36.10 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCC-CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhh
Q 001618 645 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAE 719 (1043)
Q Consensus 645 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g 719 (1043)
.....+.++.++.+.+...... -...+...+|..|+..|++++|+.+|+.+...|....- ..++..|..|....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3344566666666665322111 13456678899999999999999999999888754443 677788889999999
Q ss_pred cHHHHHHHHHHHH
Q 001618 720 QWQDCKKSLLRAI 732 (1043)
Q Consensus 720 ~~~~A~~~~~ka~ 732 (1043)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9888777655443
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.85 E-value=7.9 Score=33.34 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcch
Q 001618 373 ELLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 373 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (1043)
..+..+++..|++.+.+............ ....+.+++.++...|++++|+..+++++.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33467788888887777777665543322 24567788999999999999999999999853
No 369
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.80 E-value=5.5 Score=49.78 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=93.7
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE--- 289 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--- 289 (1043)
+.|.....+..|+.++...|++++|+.+..++.-. ....+.....+..++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45666666677777777777777777666655421 2234555666777777777777777777776666541
Q ss_pred --cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 290 --INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 290 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
.+..|.......+++.++...++++.|+.+++.+++.. | .....+..++.++...+++..|+...+....
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 13456666666777777777777888888777777642 2 2455667777888888888777777666554
Q ss_pred h
Q 001618 360 I 360 (1043)
Q Consensus 360 ~ 360 (1043)
+
T Consensus 1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred H
Confidence 3
No 370
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.46 E-value=9.3 Score=44.53 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 001618 826 QQNRQRQEAARQAA 839 (1043)
Q Consensus 826 ~~~~~~~~~~~~~~ 839 (1043)
.++|+++|+.|+.+
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566555544
No 371
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.30 E-value=1.5 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 705 ~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
..++..||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.18 E-value=17 Score=41.47 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=9.1
Q ss_pred HHHHHHHHHHcCChhHHHHH
Q 001618 517 YLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~ 536 (1043)
...++..+...|-++.|+.+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 34444445555555555443
No 373
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.10 E-value=7.8 Score=48.52 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------Y 327 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~ 327 (1043)
.-....+......|.+.+|.+ ..+++..+. ..+....++..++.++...|++++|+..-.++.-+ .
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556777777888888877 333333221 45777888999999999999999999988776543 2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001618 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 398 (1043)
Q Consensus 328 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 398 (1043)
|+....+.+++......++...|+..+.++..+ .|.-.....++..++ ..+.++.|+.+++.+........
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 445677888888888889999999998888764 365666777888888 77899999999999998766543
Q ss_pred CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 399 EE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 399 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
.+ .....+..++.++...+++..|+...+....+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 32 22455666777777888888877777666553
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.96 E-value=22 Score=40.55 Aligned_cols=159 Identities=17% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 89 KGQLLLAKGEVEQASSAFK--IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
.-...+.+|+++.+..... +++..-| ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg 332 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLG 332 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcC
Confidence 3455667888888887775 2222222 3345666677777888888776532 2 3445544 35778
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
+++.|..... ..++...|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+...++.
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 8888876543 33467788888888888888 8888877776422 335556677777776666666
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
..+.... -+...-.+++..|++++.+.++..
T Consensus 397 ~~a~~~~--------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG--------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc--------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555332 122223344455666665555543
No 375
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.94 E-value=8.7 Score=41.73 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
+..++++++|..|.--|..++++|.....++...... .-++......+.-.+..|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-------------------------~~di~~vaSfIetklv~C 237 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-------------------------AEDISSVASFIETKLVTC 237 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-------------------------hhhHHHHHHHHHHHHHHh
Confidence 5667888889999888988888765332222110000 000111123345578899
Q ss_pred HHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001618 490 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539 (1043)
Q Consensus 490 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (1043)
|..+++++.|+..-.+.+..+|.+..-+++.+.++..+.+|.+|...+--
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888665443
No 376
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.70 E-value=2.7 Score=46.72 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
...+..|+..|.+++...|.....+..++.+++++ |+.-.|+.-+..++..+|....+++.++.++...+.+.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44567899999999999999999999999888886 566678888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001618 139 FYKRALQVHPSC 150 (1043)
Q Consensus 139 ~~~~~l~~~p~~ 150 (1043)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
No 377
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.61 E-value=4.3 Score=41.94 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 91 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 91 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 345556666667766666666666666666666666666676666766666666666666
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.92 E-value=55 Score=34.45 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=39.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh----CCC----------cHHHHHHH--HHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~~l--a~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
....|..+++...|...+...++. +|+ ....+..+ -..-+..++...+..-...|...++.+|.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~ 226 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPS 226 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHH
Confidence 334566778888888877766655 332 22222211 22222333333455555556666666677
Q ss_pred cHHHHHHHHHHHHhcC
Q 001618 222 CAMALNYLANHFFFTG 237 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g 237 (1043)
....+..+|..|+...
T Consensus 227 ~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 227 FKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp THHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCC
Confidence 7777777777777643
No 379
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.69 E-value=7.9 Score=38.16 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 363 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
+++...+.||..|...+..+++.++-+++.+... +...+++++..++.++...|+++.|-
T Consensus 139 ~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455566666666555666666666666665443 22455667777777777777766654
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.11 E-value=3.1 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSA 105 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~ 105 (1043)
.|+.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.09 E-value=1.4 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHccCHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMY 692 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~ 692 (1043)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4555566666666666665554
No 382
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.00 E-value=8.2 Score=44.94 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 001618 830 QRQEAARQAALA 841 (1043)
Q Consensus 830 ~~~~~~~~~~~~ 841 (1043)
.|-|++|+.|+.
T Consensus 351 EreE~ekkerer 362 (1118)
T KOG1029|consen 351 EREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 334445554443
No 383
>PF13041 PPR_2: PPR repeat family
Probab=83.75 E-value=4.5 Score=29.85 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001618 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 714 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~ 714 (1043)
...|..+-+.|.+.|++++|.++|+.+.+. .-.++..++..+-..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 345555666666666666666666666544 234444444444433
No 384
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.52 E-value=26 Score=38.39 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 709 LYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 709 ~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
..-|.+.|+.|+.++|.++|+.+...
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34577888888888888888877543
No 385
>PF12854 PPR_1: PPR repeat
Probab=83.50 E-value=1.6 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=18.0
Q ss_pred cHHHHHHhHHHHHhcCCchHHHHHHHHH
Q 001618 629 NLYAANGAGVVLAEKGQFDVSKDLFTQV 656 (1043)
Q Consensus 629 ~~~a~~~la~~~~~~g~~~~A~~~~~~~ 656 (1043)
|...++.+...|++.|++++|..+|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4556666666666666666666666653
No 386
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=75 Score=34.82 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHccCcc---------cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchhHHHhHHHHH
Q 001618 610 THLEKAKELYTRVIVQHTS---------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~---------~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~lg~~~ 679 (1043)
+.+.+|..+-...+..... ..-.|+.+..++...|+...-...+...+....= ............|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 6778887776665543211 1223455566666777766666666665554311 11111223344456778
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
+..+.|+.|-..-.+..--...+++ +..++++|++..-.++|..|.++|-.|+...|++..+-|.
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 8889999998885443311111222 6778999999999999999999999999999997665443
No 387
>PF13041 PPR_2: PPR repeat family
Probab=83.29 E-value=3.7 Score=30.26 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 592 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 592 (1043)
...|..+...+.+.|++++|.++|+++.+..-.++.+++..+...
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777788888888888888888877766677776655544
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.15 E-value=2.5 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.5
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+++..||.+-+..++|.+|+.-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999998876
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=1.2e+02 Score=36.69 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-CCcHHHH----HHHHHH
Q 001618 267 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-Y-PDNCETL----KALGHI 340 (1043)
Q Consensus 267 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~-p~~~~~~----~~la~~ 340 (1043)
-.++...++|++|+.++..+ ..+.........|..++.. .+++-...+-+.... + +...... ..+-.+
T Consensus 497 ~ille~~~ny~eAl~yi~sl-----p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i 570 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSL-----PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSNIPDSIEFI 570 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhe
Confidence 34456667777777776543 1223333444555555433 333333333333322 1 1110000 112223
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDA 365 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~ 365 (1043)
+.-.+++..-..++....+..|+..
T Consensus 571 ~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 571 GIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred eeeccCHHHHHHHHHHHHhcCCCch
Confidence 3344566666666665666655543
No 390
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.44 E-value=4.3 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH--HHHHhCC
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYK--RALQVHP 148 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~--~~l~~~p 148 (1043)
.++.+|..+..+|+|++|+.+|+ -+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555555666666666666632 4444443
No 391
>PLN03237 DNA topoisomerase 2; Provisional
Probab=82.31 E-value=4.2 Score=52.20 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=18.1
Q ss_pred CchhhhhhhhHHHhcCCCC----CCCCCCCCCCch
Q 001618 962 DDDVEENANDRLAAAGLED----SDVDDEMAPSIT 992 (1043)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 992 (1043)
+++.-.+-+++|++-.|.- |-.-.++.|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 3444457788999988833 222233556655
No 392
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.20 E-value=23 Score=37.32 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
...++..++..+...|+++.++..+++++..+|-+...|..+...| ..|+...|+..|.++...
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777 777777777777777664
No 393
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.58 E-value=1e+02 Score=34.98 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=123.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 558 (1043)
+-..+..+..++.......-...++.+++... .+--+++.++.+|... ..+.-..++++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33444455555555555555667777777754 3467888899999887 567778888999998888888888888877
Q ss_pred hhccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHH
Q 001618 559 LKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANG 635 (1043)
Q Consensus 559 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~ 635 (1043)
.+ ++-..+..+|.+++... |.....+ +-.+ |....+... .+.+.-+....++-..... -..++..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~---i~ev-WeKL~~~i~-------dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAA---IKEV-WEKLPELIG-------DDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhh---HHHH-HHHHHHhcc-------ccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 66 88888999998887632 2111100 1111 111111000 2233333333333222221 1112222
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
+-.-|....++++|+.++..+++... .+.++.-++...+. .++....+.+-+.....+-
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~lR----------------d~y~~~~~~e~yl~~s~i~ 269 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENLR----------------DKYRGHSQLEEYLKISNIS 269 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHHH----------------HHhccchhHHHHHHhcchh
Confidence 22334445566666666666666542 22222222222111 1122222223333333333
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
..-.++.+|+.-|++.++.+.+|-..
T Consensus 270 ~~~rnf~~~l~dFek~m~f~eGnFVf 295 (711)
T COG1747 270 QSGRNFFEALNDFEKLMHFDEGNFVF 295 (711)
T ss_pred hccccHHHHHHHHHHHheeccCceEE
Confidence 33456778888899999998887544
No 394
>PRK12798 chemotaxis protein; Reviewed
Probab=81.26 E-value=95 Score=34.50 Aligned_cols=208 Identities=19% Similarity=0.095 Sum_probs=92.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 001618 107 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPEN 185 (1043)
Q Consensus 107 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 185 (1043)
..-+..+|.|..+.+.. .+.-|+..- ++.++..++.......+.-|..-+-.|+..+|...+..+--. -|..
T Consensus 74 ~~~vw~dprNv~Aa~iy---~lSGGnP~v----lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~ 146 (421)
T PRK12798 74 DPEVWDDPRNVDAALIY---LLSGGNPAT----LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAE 146 (421)
T ss_pred CHHHhCCccchhHHHhh---HhcCCCHHH----HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCch
Confidence 33344455555543322 123344432 333444444433444555666666777777777766553211 1122
Q ss_pred HHHHHHHHHHHHH-hhhHHhHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH
Q 001618 186 VEALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261 (1043)
Q Consensus 186 ~~a~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 261 (1043)
.-.++.|...... ..+ ...|+..|..+--..|... .++..-..+....|+.+++..+....+.....++....
T Consensus 147 lg~~laLv~a~l~~~~d---P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~ 223 (421)
T PRK12798 147 LGAYLALVQGNLMVATD---PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ 223 (421)
T ss_pred hhhHHHHHHHHHhcccC---HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH
Confidence 2333333322222 222 6777777777766666543 23333333445555555555555555544444443333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 326 (1043)
.+-.++..+...++-. -...+..++..+ ..+.....|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 224 F~~~F~~~~~~~~d~~-~~~~l~~~ls~~-d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 224 FAQRFVDLVVRLDDEI-RDARLVEILSFM-DPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHhccccc-cHHHHHHHHHhc-CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 3333333333322111 111122223221 12222334444555555555555555555544444
No 395
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.16 E-value=2.3 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFK 107 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~ 107 (1043)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.07 E-value=1e+02 Score=34.85 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
-..+..+..++.......-...++.+++....+- ..++.++.||... ..++-...|++.++.+-+++..-..|+..|
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3334444444444444444455556666554433 3456666666665 344555566666666666665555555555
Q ss_pred HHhhhHHhHHHHHHHHHHHHH
Q 001618 197 LQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 197 ~~~~~~~~~~~A~~~~~~al~ 217 (1043)
-. .+ ...+..+|.+++-
T Consensus 143 Ek-ik---~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EK-IK---KSKAAEFFGKALY 159 (711)
T ss_pred HH-hc---hhhHHHHHHHHHH
Confidence 44 33 4555555555543
No 397
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.81 E-value=11 Score=39.71 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 295 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
....++..++..+...|+++.++..++..+..+|.+-..|..+...|...|+...|+..|+++-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 344678889999999999999999999999999999999999999999999999999999987653
No 398
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.50 E-value=34 Score=33.85 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHHHHcCCHHHH
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~~~~g~~~~A 171 (1043)
+...+.+|..|. ..+..+|+.++-+++.+.+.. .+.++..++.++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444333 445555555555555553222 234445555555555555444
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.93 E-value=39 Score=34.91 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
+..+|.+..+.|+|++.+.++++++..+|.....=+..+..+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4456666667777777777777777766655444455555554
No 400
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=79.52 E-value=16 Score=37.87 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 300 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|+..+...+...|+++.+-..-..+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455577888999999999999999999999999999999999999999999999999999999887765544443
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.84 E-value=3.9 Score=45.35 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~-------l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|-||+.+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888999999999999997743 2223555566788999999999999999999998764
No 402
>PF12854 PPR_1: PPR repeat
Probab=77.57 E-value=4.5 Score=27.05 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.2
Q ss_pred CchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 667 QMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 667 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
.+...|..+.+.|.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3566777777777777777777777665
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.17 E-value=25 Score=39.17 Aligned_cols=64 Identities=27% Similarity=0.279 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----c-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKE----I-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 325 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~----~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 325 (1043)
+...+.++++..|+|..|++.+...--. + ...+-.+..++.+|.+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888776543210 0 01233445577788888888888888888877654
No 404
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=76.50 E-value=1.4e+02 Score=33.80 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCC----hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~ 597 (1043)
.......+.+.+..++.+.-.. |.. +.....+...++..|..+.++.++..=+..+--+|.++.+.|.+. ++..
T Consensus 74 n~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~-fl~~ 151 (429)
T PF10037_consen 74 NNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH-FLKK 151 (429)
T ss_pred hhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH-Hhhc
Confidence 3333344455566665554332 221 223345666778888888888888766665544566777777777 7776
Q ss_pred HhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 598 LRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 598 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
|++..|.++...+...
T Consensus 152 ------------~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 152 ------------GNYKSAAKVATEMMLQ 167 (429)
T ss_pred ------------ccHHHHHHHHHHHHHh
Confidence 8888888877765544
No 405
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.14 E-value=80 Score=30.73 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 001618 855 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 884 (1043)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~e~w~~ 884 (1043)
.++++|+++ ...+.++++-..-.-.|+.
T Consensus 195 aeek~Kr~~--E~qKnfEEsRd~Rv~sWrn 222 (250)
T KOG1150|consen 195 AEEKRKRER--EWQKNFEESRDGRVGSWRN 222 (250)
T ss_pred HHHHHHHHH--HHHHHHHHhcccccchHHH
Confidence 344555555 3678888887777788863
No 406
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.72 E-value=1.3e+02 Score=33.16 Aligned_cols=132 Identities=10% Similarity=0.035 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHc----c
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----G 683 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~----g 683 (1043)
...+.-+.+...+++.+|++.++|+...+++.+.+ ++..=+.+.+++++..|.+ -.+|...=.++... .
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN-----fh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN-----FHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc-----ccchHHHHHHHHHHhcccc
Confidence 45667788889999999999999999999999876 4688899999999998844 33443333332222 2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------hhc------HHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 684 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE------AEQ------WQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 684 ~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~------~g~------~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
...+=+++..+++.. +..+.++|.+-..++-. .|+ ...-+..-..|+-.+|+|++.||-.-..
T Consensus 164 ~~~~El~ftt~~I~~--nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 164 LEKEELEFTTKLIND--NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred cchhHHHHHHHHHhc--cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 245556677777776 45556777766655542 232 1223455677888899999988764443
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.59 E-value=2.3e+02 Score=35.86 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=14.3
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQE 658 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~ 658 (1043)
..|+.-+..+++.-+|-.++.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4455555566666666666555543
No 408
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.01 E-value=1.2e+02 Score=32.41 Aligned_cols=190 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhh
Q 001618 531 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610 (1043)
Q Consensus 531 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 610 (1043)
.+|+.+-.-+..+.|..|+++-.++.+.+.......=...=-..+-+.+. |...|.. +
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQ-Dr~lW~r---------------------~ 270 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQ-DRSLWDR---------------------A 270 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeecccc-chhhhhH---------------------H
Q ss_pred hHHHHHHHHHHHHccC-cccHHHHHHhHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccC
Q 001618 611 HLEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 684 (1043)
Q Consensus 611 ~~~~A~~~~~~~l~~~-P~~~~a~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~ 684 (1043)
..+++...+.+++... |.-....-.++-++.... ++..-..+|.-.....| +|.|-+|.+......--
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~~G 344 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 685 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 685 ~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
...++.+.+-....-.-....-.+-.-|..+.+.|+..+|...|.+++.+.++...-.|.....
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.47 E-value=1.1e+02 Score=31.65 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 155 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
++.++.+..+.|++++.+.++.+++..+|. +.+-...|+.+|.+. .+....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~--i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV--IGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc--cccchHHHHhhhhHhh
Confidence 456888999999999999999999999776 444455566555443 1114445554444433
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.47 E-value=2.2e+02 Score=35.48 Aligned_cols=114 Identities=18% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCcH-------
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDF--RSALTNFEKVLEIYPDNC------- 331 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~------- 331 (1043)
-+..|+..|...|..++|++++........ .++.....+-.+...+...+.. +-..++-.-++..+|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 355566666666666666666666654221 1111222222233333333333 344444444444443211
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 001618 332 ------ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL 375 (1043)
Q Consensus 332 ------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~ 375 (1043)
..-.....-|.......-++.+++.++..... ....+..++.+|
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 00011122234556667777888887765543 344444555544
No 411
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.90 E-value=72 Score=33.89 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGA 153 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~ 153 (1043)
-..++..+|..|.+.|+-+.|.+.|.+.....- +-....+.+|..|....-..+.+...+.+++...+. ...
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 346888888899999999999888877665431 123344556666665554555555555555554443 112
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
.....|...+...++.+|...|-.++..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 3334555566666777777777666543
No 412
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=72.82 E-value=31 Score=43.45 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=3.9
Q ss_pred HHHHHHccCc
Q 001618 618 LYTRVIVQHT 627 (1043)
Q Consensus 618 ~~~~~l~~~P 627 (1043)
++..+|..+|
T Consensus 274 LI~~~L~~dP 283 (1021)
T PTZ00266 274 LIKNLLNLSA 283 (1021)
T ss_pred HHHHHhcCCh
Confidence 3333444333
No 413
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.60 E-value=79 Score=34.70 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 325 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 325 (1043)
++..|.+.+.-+|++....+.+...-... +..|.. .+-+..|.+|...++|.+|+..|..++-
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c-~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMC-RVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccce-eEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788554333333222211 122222 2337788888888888888888877764
No 414
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=72.39 E-value=1.1e+02 Score=33.82 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhh------hHHHHHHHHHHHHHHHhhc
Q 001618 5 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR------EKEEHFILATQYYNKASRI 78 (1043)
Q Consensus 5 y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~------~r~~~~~~A~~~~~~a~~~ 78 (1043)
+.-+|-+.++-+||...-+..-.. . -...+|...|.++..++.+..... .-...|+.|+.-++--+..
T Consensus 70 llLnGiIHECDRLLR~~e~~~~~~----~--Lp~~FhaIYalALsELa~f~~~~~~~~~~~~v~efFdaAlER~e~Gl~~ 143 (404)
T PF12753_consen 70 LLLNGIIHECDRLLRNSEEEEKKK----E--LPDRFHAIYALALSELAIFKAEEEEEKKREKVSEFFDAALERVELGLEK 143 (404)
T ss_dssp HHHHHHHHHHHHHHHHSS-GG-------G--S-HHHHHHHHHHHHHHHHTHHHHGGGS-TT--HHHHHHHHHHHHHGGSS
T ss_pred hhhccchHHHHHHHHccccccccc----c--ccHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 445677888888888753221000 0 011245555666666666653322 2257899999999999999
Q ss_pred CCCChhhHHHHHHHHHHc
Q 001618 79 DMHEPSTWVGKGQLLLAK 96 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~ 96 (1043)
.|.+....+..+.+++.+
T Consensus 144 ~p~s~~L~l~~skIll~r 161 (404)
T PF12753_consen 144 FPDSILLLLAKSKILLQR 161 (404)
T ss_dssp S--H-HHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHh
Confidence 999988888777776654
No 415
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=71.57 E-value=32 Score=33.81 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.8
Q ss_pred HHHHHhhhcc
Q 001618 876 QRVKEQWRSS 885 (1043)
Q Consensus 876 ~~~~e~w~~~ 885 (1043)
+...+.|.+.
T Consensus 116 rqkie~we~~ 125 (190)
T PF06936_consen 116 RQKIEMWESM 125 (190)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHH
Confidence 3444667443
No 416
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=70.67 E-value=1.7e+02 Score=31.96 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=45.6
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 558 (1043)
+...|+....++...+++++-..+... ...|..|.-...++...|+..+|..++.++ | . .....+|
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----~---~--~~rv~~y 272 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYIPKI----P---D--EERVEMY 272 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----C---h--HHHHHHH
Confidence 445566666667777777665554321 122344555556666677777777666651 1 1 3345556
Q ss_pred hhccchHHHHHHHH
Q 001618 559 LKNDDWVKAKETFR 572 (1043)
Q Consensus 559 ~~~g~~~~A~~~~~ 572 (1043)
++.|+|.+|.+...
T Consensus 273 ~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 273 LKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHH
Confidence 67777777765543
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.28 E-value=1.4e+02 Score=33.01 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH---HhcCCCCcHH
Q 001618 332 ETLKALGHIYVQLGQIEKAQELLRKAAKID---PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL---KKAGEEVPIE 404 (1043)
Q Consensus 332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~ 404 (1043)
.++..+|.-|...|+++.|++.|-++-... ......+.++..+- ..++|..-..+..++.... .+.....++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 466777888888888888888887754332 22345566666666 7778877777766665542 1112233455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+...-|.+++..++|..|..+|-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666677788888899999999866543
No 418
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.90 E-value=7.9 Score=26.69 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 001618 515 DAYLRLAAIAKARNNLQLSIELVNEALKV 543 (1043)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (1043)
+++..||.+....++|.+|+.-|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566666666666666666666666654
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.65 E-value=1.5e+02 Score=30.98 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 457 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1043)
.....+..+.++...+...+.... ..+...+|..|+..|++++|..+|+.+........
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------------------- 212 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------------------- 212 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 344556777777777766543222 45667889999999999999999999864311000
Q ss_pred hhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHH
Q 001618 458 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506 (1043)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 506 (1043)
-......++..+..|+...|+.+..+.+.-++
T Consensus 213 -----------------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 213 -----------------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 01124456677778888888877766654443
No 420
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=69.61 E-value=6.4 Score=44.11 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=6.1
Q ss_pred cCCCCCCCCCC
Q 001618 976 AGLEDSDVDDE 986 (1043)
Q Consensus 976 ~~~~~~~~~~~ 986 (1043)
.|..|+|+|++
T Consensus 336 ~desDeedd~e 346 (555)
T KOG2393|consen 336 SDESDEEDDLE 346 (555)
T ss_pred ccccccccCcc
Confidence 56666555543
No 421
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=67.90 E-value=3.9 Score=44.45 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=12.8
Q ss_pred hhhhhhHHHhcCCCCCCCCCC
Q 001618 966 EENANDRLAAAGLEDSDVDDE 986 (1043)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~ 986 (1043)
++..+-.|-+--|.|+|+|+.
T Consensus 90 ~e~~e~~~~~~~l~~~~~de~ 110 (807)
T KOG0066|consen 90 DEKPEKSLPANDLDDEDDDEA 110 (807)
T ss_pred ccchhhcCcccccCCCCchhh
Confidence 334555566667877776644
No 422
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=67.84 E-value=42 Score=36.65 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 001618 778 VRVFSHLS 785 (1043)
Q Consensus 778 ~~~~~~l~ 785 (1043)
+.+...+.
T Consensus 241 ~~l~D~~~ 248 (321)
T PF07946_consen 241 FYLIDKLA 248 (321)
T ss_pred HHHHHHhh
Confidence 33333333
No 423
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=67.74 E-value=3.4 Score=45.07 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=9.6
Q ss_pred hcCCCCCCCCCC
Q 001618 975 AAGLEDSDVDDE 986 (1043)
Q Consensus 975 ~~~~~~~~~~~~ 986 (1043)
-+|++|||+++|
T Consensus 106 E~GFAdSDDEdD 117 (458)
T PF10446_consen 106 EAGFADSDDEDD 117 (458)
T ss_pred cccccccccccc
Confidence 379999988765
No 424
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.68 E-value=13 Score=23.93 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001618 98 EVEQASSAFKIVLEADRDNVPALLGQA 124 (1043)
Q Consensus 98 ~~~~A~~~~~~~l~~~p~~~~a~~~la 124 (1043)
+++.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555554444444433
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.32 E-value=22 Score=36.98 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
+...+..|...|.+.+|+.+.++++.++|-+...+..+..++ ..||--.+...|++..+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 334455555556666666666666666666666665555555 5555555555555544433
No 426
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.10 E-value=1.3e+02 Score=29.25 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=97.3
Q ss_pred CCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH-----HcCCHHHHHHHHHHHHHHCCCc
Q 001618 257 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-----KLGDFRSALTNFEKVLEIYPDN 330 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~~p~~ 330 (1043)
...+++.+.|+..+.. +.+|+.|..+|..-.. ....+...+.+|..++ ..+++..|+..|..+-. .+.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd----en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~ 104 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD----ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANI 104 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCC
Confidence 3456777777776643 4578888888876553 3444556666766555 34578899999988765 457
Q ss_pred HHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcH
Q 001618 331 CETLKALGHIYVQL-----G--QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 403 (1043)
Q Consensus 331 ~~~~~~la~~~~~~-----g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 403 (1043)
+.+...+|.++..- + +..+|..++.++-.+ .+..+-+.|...+..|.-. +....|..+.+..
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k--------~~t~ap~~g~p~~- 173 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEK--------FKTNAPGEGKPLD- 173 (248)
T ss_pred HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchh--------hcccCCCCCCCcc-
Confidence 88888888887653 2 377899999988765 4566667777766433211 1111222222221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 404 EVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
.+..+.-..+.+.|.++--++-++
T Consensus 174 -----~~~~~~~~kDMdka~qfa~kACel 197 (248)
T KOG4014|consen 174 -----RAELGSLSKDMDKALQFAIKACEL 197 (248)
T ss_pred -----hhhhhhhhHhHHHHHHHHHHHHhc
Confidence 233444566778888887777653
No 427
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.05 E-value=1.1e+02 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=17.2
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 343 (1043)
...+.+...+.+++.++..++.++.....+..+|.+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 334455555555555554444444444444444443
No 428
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.27 E-value=15 Score=23.60 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554443
No 429
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.23 E-value=1.2e+02 Score=36.55 Aligned_cols=240 Identities=16% Similarity=0.065 Sum_probs=100.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH-hHHHH---HHHc
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-GIGLC---RYKL 165 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~-~lg~~---~~~~ 165 (1043)
..+++..|+|+.|+.++-. .+.+..--..+|.++...|-..-.-..-...+..+|..++.+.+ .+... .+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4677889999999999876 22233222333444444443333333225555555544221111 11112 2345
Q ss_pred CCHHHHHHHHHHHHhh-CCCcHH-HHHHHHHHHHHhh-------h---HH-hHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001618 166 GQLGKARQAFQRALQL-DPENVE-ALVALAVMDLQAN-------E---AA-GIRKGMEKMQRAFEIYPY---CAMALNYL 229 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~-~p~~~~-a~~~la~~~~~~~-------~---~~-~~~~A~~~~~~al~~~p~---~~~~~~~l 229 (1043)
.+...|+.+|--+-.. +|.... .+..+..+.+..+ + .| ...-.+....+.+..... ...+....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 6777788777644322 122221 2222333322222 1 00 123334443334444322 22445556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC----CCChhhHH-
Q 001618 230 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KP----HEFIFPYY- 301 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~----~~~~~~~~- 301 (1043)
|.-....|++..|+.+|.-+- +|+.++.++.+.+...- .. .....-..
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~------------------------~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~ 476 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE------------------------EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIE 476 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-------------------------HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHcCccccccccchhhhHHH
Confidence 677777888888888887652 45556655555544210 11 00111122
Q ss_pred ---HHHHHHHHcCCH-----HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 302 ---GLGQVQLKLGDF-----RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367 (1043)
Q Consensus 302 ---~la~~~~~~g~~-----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 367 (1043)
.+...|...+.. ......|..++.+ .-..-++..|+++.|+..+++ +.+-|.+...
T Consensus 477 la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L---------~~ff~~~~~g~~~~AL~~i~~-L~liP~~~~~ 540 (613)
T PF04097_consen 477 LAKEILERYKSNPHISSKVSRKNRETFQLLLDL---------AEFFDLYHAGQYEQALDIIEK-LDLIPLDPSE 540 (613)
T ss_dssp HHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHH---------HHHHHHHHTT-HHHHHHHHHH-TT-S-S-HHH
T ss_pred HHHHHHHHHHhCcchHhhccHHHHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHh-CCCCCCCHHH
Confidence 222333332222 4556666666663 233446677888888888876 3456755544
No 430
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.24 E-value=7.5 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=15.3
Q ss_pred HhHHHHHHHccCHHHHHHHHHHHHH
Q 001618 673 INLAHVYFAQGNFALAMKMYQNCLR 697 (1043)
Q Consensus 673 ~~lg~~~~~~g~~~~A~~~~~~al~ 697 (1043)
++|+.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666653
No 431
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=64.13 E-value=2.6e+02 Score=31.83 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001618 121 LGQACVEFNRGRYSDSLEFYKRALQVH 147 (1043)
Q Consensus 121 ~~la~~~~~~g~~~~Al~~~~~~l~~~ 147 (1043)
..+|..++..|+|+-|...|+.+..-.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 446666666666666666666655543
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.80 E-value=27 Score=36.28 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
.+...+..|...|.+.+|+.+.++++..+|-+ ...+..+...+..+|+--.|...|++.-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556777888899999999999999999988 66788888889999987777777776543
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.32 E-value=1.2e+02 Score=33.49 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
.++..++..|...|+.+.|++.|.++.............+.++..+-...|+|..-..+..++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35566677777777777777777765544333334445566666666666666666666665553
No 434
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=62.66 E-value=70 Score=29.27 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=57.5
Q ss_pred HHHHhHHHHHhcCCchHHHHHHHHHHHHh-----------cCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAA-----------SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 632 a~~~la~~~~~~g~~~~A~~~~~~~~~~~-----------p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
.+..+..++...|+++.-..+++++-... |+++.-.+..++..+.++|...|++..|+.+.....+.|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 45566677778888888877777765443 2233334567778888888888888888888888888877
Q ss_pred CCCCHHHHHHHHH
Q 001618 701 YNTDAQILLYLAR 713 (1043)
Q Consensus 701 ~~~~~~~l~~la~ 713 (1043)
-+-...+|..|-.
T Consensus 84 I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 84 IPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHH
Confidence 5555666665543
No 435
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.64 E-value=54 Score=32.72 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=34.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.++..+.+++|+...+.-++..|.+......+-.+++-.|+|.+|+.-++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455555666666666666666655555555555555666666666655555555554
No 436
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.57 E-value=9.6 Score=45.22 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHH
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSL 137 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al 137 (1043)
|.-..+.+++..|++-.|-.+.++
T Consensus 403 pr~s~~~~g~s~cly~~~~~q~~m 426 (1516)
T KOG1832|consen 403 PRVSETFYGLSSCLYTIGSLQGIM 426 (1516)
T ss_pred CCchhhhhhHHHHHHHHhhhhhHH
Confidence 344455555555555555444443
No 437
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.22 E-value=22 Score=33.13 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 132 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 132 (1043)
.-.+..+..+...+..|++.-|..+++.++..+|+|..+...++.++.++|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888887766553
No 438
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=61.65 E-value=2.9e+02 Score=31.49 Aligned_cols=42 Identities=19% Similarity=0.046 Sum_probs=29.9
Q ss_pred hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
+....-.+|.+.+.+|+|+.|...|+-+..-.- +-.+|..+|
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A 248 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLA 248 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHH
Confidence 344455699999999999999999998876332 333444444
No 439
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.62 E-value=9.5 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=17.9
Q ss_pred HHHHhHHHHHhcCCchHHHHHHHHHHH
Q 001618 632 AANGAGVVLAEKGQFDVSKDLFTQVQE 658 (1043)
Q Consensus 632 a~~~la~~~~~~g~~~~A~~~~~~~~~ 658 (1043)
+++.+...|.+.|++++|..+|.++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666667777777777777776654
No 440
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.38 E-value=46 Score=33.22 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 364 (1043)
.-+++.+...+|+...+.-++..|.+......+-.+++-.|++++|...++-+-.+.|.+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445667777788888877777788887777777888888888888888887777777765
No 441
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=60.21 E-value=2.5e+02 Score=30.27 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
.-+..+...+.++.|+..++..+...+. .....+.++.++...|.++-|..+|..+.+
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3356666677777777777765443222 223445567777777777777777777654
No 442
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=60.16 E-value=96 Score=34.61 Aligned_cols=18 Identities=56% Similarity=0.647 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001618 834 AARQAALAEEARRKAEEQ 851 (1043)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~ 851 (1043)
++...+..+|.+|+++|.
T Consensus 415 eae~e~kreearrkaeee 432 (708)
T KOG3654|consen 415 EAEKEQKREEARRKAEEE 432 (708)
T ss_pred HHHHHHHHHHHHHhhHhh
Confidence 333333344445554444
No 443
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.09 E-value=32 Score=36.65 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 136 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 136 Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
|..+|.+++.+.|.. ..++..+|.++...|+.-.|+-+|-+++-.....+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 456666666666666 56666666666666666666666666665433344455554444333
No 444
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.93 E-value=1.1e+02 Score=31.89 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--G 131 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~--g 131 (1043)
...-..|++.-...+..+|....+|...-.+... .--++.-+..+..++..+|.+...|...-.++-.. .
T Consensus 45 keys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~ 124 (328)
T COG5536 45 KEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP 124 (328)
T ss_pred hhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc
Confidence 3444567777777777778766666665444433 12256677888999999999998888777666554 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHH------HHcCCHHHHHHHHHHHHhhCCCcHHHHHHH---HHHHHHhhhH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR------YKLGQLGKARQAFQRALQLDPENVEALVAL---AVMDLQANEA 202 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~~~a~~~l---a~~~~~~~~~ 202 (1043)
++..-+.+.++++..+|.+ -.+|...-.|+ .....+..-.++-..++..++.|..+|... .......|+.
T Consensus 125 ~~~rEl~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 125 SWGRELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred ccchhHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 6888888889999999887 33333222222 222333344455556677788888887766 3333334442
Q ss_pred Hh---HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001618 203 AG---IRKGMEKMQRAFEIYPYCAMALNYLA 230 (1043)
Q Consensus 203 ~~---~~~A~~~~~~al~~~p~~~~~~~~la 230 (1043)
.+ +.+-+++.-..+-.+|.+..+|..+-
T Consensus 204 isqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 204 ISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred chHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 21 44555666666666777776666543
No 445
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=59.93 E-value=2.9e+02 Score=30.88 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=23.6
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 506 (1043)
..|.+..+...+.++|...|-...|...|..+
T Consensus 212 ~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 212 KSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45677777777777777778877777777653
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=97 Score=35.84 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=65.8
Q ss_pred HHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHH
Q 001618 614 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 693 (1043)
Q Consensus 614 ~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 693 (1043)
+...+.+++|...|+... .-.+..+.|+++.|..+..++ ++..-|-.||.+....|++..|.+.|.
T Consensus 625 e~~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~----------~s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 625 ESQGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEA----------NSEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred hhccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhh----------cchHHHHHHHHHHhhcccchhHHHHHH
Confidence 334445555665554322 123455778888888776665 456778899999999999999999988
Q ss_pred HHHHHh------cCCCCHHHHHHHH-------------HHHHhhhcHHHHHHHHHHH
Q 001618 694 NCLRKF------YYNTDAQILLYLA-------------RTHYEAEQWQDCKKSLLRA 731 (1043)
Q Consensus 694 ~al~~~------~~~~~~~~l~~la-------------~~~~~~g~~~~A~~~~~ka 731 (1043)
++...- ....+...+..|| .+++..|++++|++.+.+-
T Consensus 691 ~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 691 RARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 875431 1233344444444 3566677777777666543
No 447
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.56 E-value=23 Score=37.72 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 001618 499 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560 (1043)
Q Consensus 499 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 560 (1043)
|..+|.+++.+.|+....|..+|.++...|+.-.|+.+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788889999999989999999998888888888888888886665557777777777655
No 448
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.53 E-value=4.4e+02 Score=32.92 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.7
Q ss_pred hHHHHHcCCHHHHHHHHHhc
Q 001618 2 QREYFKQGKVEQFRQILEEG 21 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~ 21 (1043)
|..+|.||+|++|...|+.+
T Consensus 353 a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhh
Confidence 45688999999999998875
No 449
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=59.52 E-value=5.7 Score=46.09 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=6.7
Q ss_pred chhhccCCchhhc
Q 001618 1017 TDELQDSDGELRE 1029 (1043)
Q Consensus 1017 ~~~~~~~~~~~~~ 1029 (1043)
-...+.++++||+
T Consensus 265 d~i~E~~~~~i~~ 277 (822)
T KOG2141|consen 265 DGISEISNSEIRD 277 (822)
T ss_pred ccccccccccccC
Confidence 3344555555555
No 450
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.88 E-value=20 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLE 111 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~ 111 (1043)
+.+|..|...|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4456666666666666666666663
No 451
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.86 E-value=1.1e+02 Score=30.88 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHhhHHHHHHHHH
Q 001618 858 KRKLEDEQKRLRQ 870 (1043)
Q Consensus 858 ~~~~~~~~~~~~~ 870 (1043)
..|++++.|+++.
T Consensus 154 e~k~ee~~RkakE 166 (299)
T KOG3054|consen 154 ELKEEEKERKAKE 166 (299)
T ss_pred HHhHHHHHHHHHH
Confidence 3344444444444
No 452
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=58.82 E-value=1.5e+02 Score=27.25 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHccCcccHHHH---HHh--------HHHHH---------hcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAA---NGA--------GVVLA---------EKGQFDVSKDLFTQVQEAASGSVFVQMP 669 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~---~~l--------a~~~~---------~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 669 (1043)
|..++..++..+.....|-.-+-| +-+ ..++- ..|++..-+..+-.+- ..
T Consensus 16 G~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n----------~~ 85 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN----------KL 85 (161)
T ss_dssp T-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------------
T ss_pred chHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc----------ch
Confidence 888888999988887766532222 111 11111 1244444444444331 12
Q ss_pred hHHHhHH-HHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 670 DVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 670 ~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
.-|+.+| .++..+|+-+.=-+.+....+. ...+|+++..+|.+|.+.|+..++-+.+.+|.+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2345555 3455667776666666665542 4566999999999999999999999999988765
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.23 E-value=81 Score=30.64 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=16.2
Q ss_pred hHHHHHcCCHHHHHHHHHhc
Q 001618 2 QREYFKQGKVEQFRQILEEG 21 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~ 21 (1043)
|..||+.|++.+|.++.+.+
T Consensus 20 ~c~aFR~~r~~dFr~~rdi~ 39 (200)
T cd00280 20 ACRAFREGRYEDFRRTRDIA 39 (200)
T ss_pred HHHHHHccChHHHHHHHHHH
Confidence 56799999999998876653
No 454
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=57.08 E-value=1.9e+02 Score=28.06 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=88.9
Q ss_pred CCChHHHHHHHHHhhh-ccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHH
Q 001618 545 GKYPNALSMLGDLELK-NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 623 (1043)
Q Consensus 545 p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 623 (1043)
...|+....||..+.. ..+|+.|.++|..--..+. -+.+.+.+|+. ++..-.... +++..|++.|..+-
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~--y~kSCyKyG~y-~~~GKgG~~-------~~l~~a~r~~~~aC 100 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS--YPKSCYKYGMY-MLAGKGGDD-------ASLSKAIRPMKIAC 100 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CcHHHHHhhhh-hhcccCCCc-------cCHHHHHHHHHHHh
Confidence 3455666666665443 3467777777776444321 22334445554 443311111 67788888888776
Q ss_pred ccCcccHHHHHHhHHHHHhc-----C--CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHH
Q 001618 624 VQHTSNLYAANGAGVVLAEK-----G--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696 (1043)
Q Consensus 624 ~~~P~~~~a~~~la~~~~~~-----g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 696 (1043)
.. +.+.+-..++.++... + +..+|+.++.++.+.. +..+.++|.-.|....+ ++ .
T Consensus 101 ~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~-------~~~aCf~LS~m~~~g~~--k~-------~ 162 (248)
T KOG4014|consen 101 DA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE-------DGEACFLLSTMYMGGKE--KF-------K 162 (248)
T ss_pred cc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-------CchHHHHHHHHHhccch--hh-------c
Confidence 53 3445555555555432 2 3678888888888764 45666677665554221 11 1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 697 ~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
...|....|-.-. ..+.-..+.+.|.++.-+|.++. ++.+--|+...
T Consensus 163 t~ap~~g~p~~~~---~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrM 209 (248)
T KOG4014|consen 163 TNAPGEGKPLDRA---ELGSLSKDMDKALQFAIKACELD--IPQACANVSRM 209 (248)
T ss_pred ccCCCCCCCcchh---hhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHH
Confidence 1111101111111 12223455666777777777663 44444455554
No 455
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.60 E-value=3.2e+02 Score=30.45 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=61.3
Q ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCC
Q 001618 325 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEV 401 (1043)
Q Consensus 325 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~ 401 (1043)
+.-|..++.+..+..-+++--..+.|..+|++.-... .-+..++..+..+. ..| .+++..++.. ...+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisq----km~P 271 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQ----KMTP 271 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHh----hcCC
Confidence 4556666666665555555577888888888765432 33445555444433 222 2333333332 2234
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 402 PIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+..+++.+-.+...-|+|+.|...+-+++.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~ 301 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILG 301 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 567888888899999999999888887765
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.09 E-value=1.9e+02 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEA 112 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~ 112 (1043)
.+..++..++|..|...|..+...
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555543
No 457
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.76 E-value=4.1e+02 Score=31.36 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 001618 60 EKEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 133 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~ 133 (1043)
-+.++|..++++|...++..|.+. ...-.++.+|+...+.+.|.+.+..+-+.+|.++...+..-.+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 456789999999999998888654 23345678899999999999999999999999999888888888899999
Q ss_pred HHHHHHHHHHHHh
Q 001618 134 SDSLEFYKRALQV 146 (1043)
Q Consensus 134 ~~Al~~~~~~l~~ 146 (1043)
.+|+.+.......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877655
No 458
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.81 E-value=1.8e+02 Score=26.95 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
...+.....+.+++.++..++.++.....+..++..
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 334455555555555555444444444444444443
No 459
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.35 E-value=12 Score=43.79 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=8.4
Q ss_pred ccCCCCCCcchhcc
Q 001618 935 MMDYREEPEDEDAS 948 (1043)
Q Consensus 935 ~~~~~~~~~~~~~~ 948 (1043)
++++.|+.+|++-.
T Consensus 844 ~~~~~~e~~ddd~e 857 (988)
T KOG2038|consen 844 EDGSLPEEEDDDYE 857 (988)
T ss_pred cCCcCcccccchhh
Confidence 45666666666444
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.35 E-value=1.7e+02 Score=34.76 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHH
Q 001618 561 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 640 (1043)
Q Consensus 561 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~ 640 (1043)
-|+-..|+...-.+++......+..++.-|.+ |-..--. +.....+..+.|+.+|+++++..|.-. +-.+++.++
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRI-YKDmF~~---S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL 330 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRI-YKDMFIA---SNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLL 330 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechh-hhhhhhc---cCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHH
Confidence 35667777777766665544333333334554 4333110 000112788999999999999999733 233445555
Q ss_pred HhcC
Q 001618 641 AEKG 644 (1043)
Q Consensus 641 ~~~g 644 (1043)
...|
T Consensus 331 ~aaG 334 (1226)
T KOG4279|consen 331 RAAG 334 (1226)
T ss_pred HHhh
Confidence 5444
No 461
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.29 E-value=2.1e+02 Score=32.15 Aligned_cols=62 Identities=21% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHH--HHHHH--HHHHHHcCChhHHHHHHHHHHHH
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--AYLRL--AAIAKARNNLQLSIELVNEALKV 543 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 543 (1043)
.....+..+...++|..|..++..+...-|.... .+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445667788999999999999999886333332 33333 44456778899999999987765
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.26 E-value=19 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHhHHHHHhcCCchHHHHHHHHHHHH
Q 001618 632 AANGAGVVLAEKGQFDVSKDLFTQVQEA 659 (1043)
Q Consensus 632 a~~~la~~~~~~g~~~~A~~~~~~~~~~ 659 (1043)
.++.+..++.+.|+++.|..+|..+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566677777777777777777777664
No 463
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.77 E-value=20 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEA 659 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 659 (1043)
++.+...|.+.|++++|..+|..+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455666666777777777777766554
No 464
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=53.19 E-value=20 Score=38.43 Aligned_cols=76 Identities=22% Similarity=0.173 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 374 (1043)
....++.+-++.+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++..+...+..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 4556778888888888888888878777788889999999999999999999999999999999887665544443
No 465
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=53.03 E-value=1.6e+02 Score=34.46 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=6.0
Q ss_pred chHHHHhhhcC
Q 001618 991 ITAARRRRALS 1001 (1043)
Q Consensus 991 ~~~~~~~~~~~ 1001 (1043)
|.+.+.||-|-
T Consensus 502 S~~VsarrPlA 512 (811)
T KOG4364|consen 502 SQVVSARRPLA 512 (811)
T ss_pred ccccccCCccc
Confidence 44555566554
No 466
>PLN03086 PRLI-interacting factor K; Provisional
Probab=52.87 E-value=94 Score=36.36 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001618 827 QNRQRQEAARQAAL 840 (1043)
Q Consensus 827 ~~~~~~~~~~~~~~ 840 (1043)
+.+.|++..|++++
T Consensus 22 ~~~~~~~~~~~~~~ 35 (567)
T PLN03086 22 RAKLKLERERKAKE 35 (567)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 467
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.52 E-value=20 Score=22.67 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLR 697 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 697 (1043)
+|..+-.+|.+.|++++|...|.++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666777777777777777776654
No 468
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=21 Score=38.20 Aligned_cols=128 Identities=18% Similarity=0.091 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHH
Q 001618 408 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 487 (1043)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 487 (1043)
..+...+..+++..|..-|.+++..... ++...... + .+ ...........+..+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~~~~e------------------~-~~--~~~~~~~~r~~~~~n~~ 282 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSE---QSRDREKE------------------Q-EN--RIPPLRELRFSIRRNLA 282 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcc---cccccccc------------------c-cc--ccccccccccccccchH
Confidence 3566788899999999999888763210 00000000 0 00 00112333445666788
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 488 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
.+-...+.+..|+..-..++..+++...++++.+..+....++++|+..+..+....|.+..+...+..+-.
T Consensus 283 ~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 283 AVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred HhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 888899999999888777777888889999999999999999999999999999999998876665554433
No 469
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.85 E-value=31 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.8
Q ss_pred HccCHHHHHHHHHHHHHHhcC
Q 001618 681 AQGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 681 ~~g~~~~A~~~~~~al~~~~~ 701 (1043)
..|+|++|+.+|..++..|-.
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 458889999999998888743
No 470
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=16 Score=40.75 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=9.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 001618 94 LAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 94 ~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
+..|-...-+..+.-.++.+|.
T Consensus 95 ls~GT~~DrIsalTLLVq~sP~ 116 (821)
T COG5593 95 LSHGTVKDRISALTLLVQRSPS 116 (821)
T ss_pred HhcCchhhhhhhhHhhhccCcc
Confidence 3344444444444444444443
No 471
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.87 E-value=1.1e+02 Score=36.16 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHcC-----CC-------hHHHHHHHHHh
Q 001618 492 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNG-----KY-------PNALSMLGDLE 558 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-----~~-------~~~~~~l~~~~ 558 (1043)
..+..+.|+.+|+++++..|... +-.+++.++...|. ++...++-.-.+.++. .+ .++-..++ +-
T Consensus 299 Da~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~-as 376 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE-AS 376 (1226)
T ss_pred chhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh-hh
Confidence 34566789999999999888642 22344444444443 3334443333333331 11 11111121 12
Q ss_pred hhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHH
Q 001618 559 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 623 (1043)
Q Consensus 559 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 623 (1043)
.-.+++.+|+...+.+.++.|. ..|....++++.++..-+.....+..+...+.==..+|-++-
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P-~WYLkS~meni~l~~~fr~t~e~p~~e~q~~~FWmdF~leat 440 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPP-VWYLKSTMENILLINRFRPTIEPPEKEKQQFLFWMDFFLEAT 440 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCc-eehHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 3357889999999988888765 555555666663444333333333333344444444444443
No 472
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.93 E-value=1.1e+02 Score=35.85 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
+..++.+....+.-+..........+..+..+-..|..++|-.+|++.+..+|+ ..++..|..+++.|-...|..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 345556666666655555555666677777777777778888888888777776 566677777777777777776666
No 473
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.85 E-value=2.9e+02 Score=32.26 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 271 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324 (1043)
Q Consensus 271 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 324 (1043)
.+.|+++.|..+..++- ...-|-.||.+....+++..|.++|.++.
T Consensus 648 l~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 45566666655544332 12336666666666666666666666553
No 474
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.17 E-value=40 Score=21.78 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+|..+-..|.+.|++++|..+|..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3556677788888888888888776654
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=6.7e+02 Score=30.93 Aligned_cols=23 Identities=17% Similarity=-0.125 Sum_probs=17.8
Q ss_pred hHHHHHHhcCChHHHHHHHHHHH
Q 001618 485 NLARLLEQIHDTVAASVLYRLIL 507 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l 507 (1043)
.|+.-+...|.++.|..++..-+
T Consensus 911 ~L~adhvaAGsf~tA~~lL~dqv 933 (1202)
T KOG0292|consen 911 PLAADHVAAGSFETAMRLLHDQV 933 (1202)
T ss_pred cchhhhhhcCchHHHHHHHHhhh
Confidence 35666778899999999887654
No 476
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=45.17 E-value=2.5e+02 Score=31.84 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=52.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHc
Q 001618 267 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 267 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~ 344 (1043)
+.......+.+.+..++.+....-..........+.+...++..|..+.++.++..=+. +.|++ ...+.+...+...
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN-FSFNLLMDHFLKK 151 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh-hhHHHHHHHHhhc
Confidence 33333444455555555555431111111122344666777777777777777765443 34543 4445566677788
Q ss_pred CCHHHHHHHHHHHHHh
Q 001618 345 GQIEKAQELLRKAAKI 360 (1043)
Q Consensus 345 g~~~~A~~~~~~~l~~ 360 (1043)
|++..|..+...++..
T Consensus 152 ~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQ 167 (429)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 8888888887776544
No 477
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.03 E-value=62 Score=30.25 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCC
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~ 167 (1043)
....+..|...+..|+|.-|..+.+.++..+|++ ..++...+.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHH
Confidence 5566667777788889999999999999999988 5667777777766553
No 478
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=44.93 E-value=1.2e+02 Score=33.11 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 001618 771 VAELENAVRVFSHLSAASN 789 (1043)
Q Consensus 771 ~~~l~~a~~~~~~l~~~~~ 789 (1043)
+..+..-+..+-.|.+...
T Consensus 230 ~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344555566666666543
No 479
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.76 E-value=6.3e+02 Score=30.35 Aligned_cols=19 Identities=0% Similarity=0.153 Sum_probs=13.3
Q ss_pred HHHHHHccCcccHHHHHHh
Q 001618 618 LYTRVIVQHTSNLYAANGA 636 (1043)
Q Consensus 618 ~~~~~l~~~P~~~~a~~~l 636 (1043)
-|+++.+.+|.+...+...
T Consensus 764 EFDqiMksDPe~m~~lv~k 782 (1259)
T KOG0163|consen 764 EFDQIMKSDPETMLELVAK 782 (1259)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 4788888888876655433
No 480
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.32 E-value=44 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=10.8
Q ss_pred HcCChHHHHHHHHHHHH
Q 001618 129 NRGRYSDSLEFYKRALQ 145 (1043)
Q Consensus 129 ~~g~~~~Al~~~~~~l~ 145 (1043)
..|+|++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 45666666666666654
No 481
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.71 E-value=1.1e+02 Score=30.44 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 687 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 687 ~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
..++..++.++. .+++.++..++.++...|+.++|..+..++..+.|.+
T Consensus 129 ~~~~~a~~~l~~---~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 129 AYIEWAERLLRR---RPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 333444444443 5678999999999999999999999999999999933
No 482
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.56 E-value=5.2e+02 Score=29.01 Aligned_cols=208 Identities=14% Similarity=0.017 Sum_probs=124.8
Q ss_pred HHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----
Q 001618 43 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDN---- 116 (1043)
Q Consensus 43 ~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~---- 116 (1043)
.+.|....++.+. ....-.+.|-.|........-.+| ++..+..+.++....++..|..+++++.-.+ |.+
T Consensus 236 a~~wml~d~~~v~-~~~~~~~~~h~al~~~~g~d~~~s--vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~ 312 (482)
T KOG4322|consen 236 AMKWMLHDLLEVE-ENNLNTSYYHKALNSWFGGDYQQS--VENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEML 312 (482)
T ss_pred HHHHHHHHhHHHH-HhhhhhhHHHHHHHHhhcchHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 4566666666555 233345677777777665544443 6778889999999999999999999987654 333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc------
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------ 185 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 185 (1043)
..++..++.++.+.+.-..++.+.-.++..... .....-..++..+..+|..+.|...+..++..--.+
T Consensus 313 ~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr 392 (482)
T KOG4322|consen 313 HSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR 392 (482)
T ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc
Confidence 245566666666666666666555544443211 123345668888889999999999999887641100
Q ss_pred HHHHHHHHHHHHHhh---hHHhHHHHHHHHHHHHHh----C--CCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhc
Q 001618 186 VEALVALAVMDLQAN---EAAGIRKGMEKMQRAFEI----Y--PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVT 253 (1043)
Q Consensus 186 ~~a~~~la~~~~~~~---~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~ 253 (1043)
..+.+..+.++.... .....+.++..++.+-.. . .....+.+.++..|-..|+.++ +..+|.+.....
T Consensus 393 ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~l 472 (482)
T KOG4322|consen 393 ARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYL 472 (482)
T ss_pred ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Confidence 000000001100000 011134444444433321 2 2356788889999999998765 666777776544
No 483
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=43.07 E-value=5.5e+02 Score=29.14 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCC
Q 001618 771 VAELENAVRVFSHLSAASNLHLHGF 795 (1043)
Q Consensus 771 ~~~l~~a~~~~~~l~~~~~~~~~~~ 795 (1043)
|.-|..-..+|..|.....+|.+++
T Consensus 296 IqiLGAeKalf~~l~t~~~~pk~G~ 320 (414)
T PRK14552 296 IQVLGAEKALFRHLRTGAKPPKHGV 320 (414)
T ss_pred HHHhchhhHHHHHhccCCCCCCceE
Confidence 5556666668888988766555554
No 484
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.73 E-value=1.4e+02 Score=24.35 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001618 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 746 (1043)
Q Consensus 667 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla 746 (1043)
.++..+...|.-+-..|++.+|+.+|+.++.. +.+++...|+++.-.+-..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~-----------------------------L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV-----------------------------LSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------------HHHHHHhCCChHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHH
Q 001618 747 VAMQKFSASTLQKTRRTADEVRSTV 771 (1043)
Q Consensus 747 ~~~~~~~~~~l~~~~~~~~~l~~a~ 771 (1043)
.+. ..+.+.+ .|+..+
T Consensus 55 ki~-----eY~~Rae----~Lk~~v 70 (75)
T cd02682 55 MIN-----EYKRRIE----VLEKQN 70 (75)
T ss_pred HHH-----HHHHHHH----HHHHHc
No 485
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.07 E-value=7e+02 Score=30.15 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=30.8
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 542 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (1043)
...+....|.-....|++.+|+.+|.. .++++.++.++.+.+.
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~L---------------------a~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHL---------------------AEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHH---------------------TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------HhhHHHHHHHHHHHHH
Confidence 455677778889999999999998875 3467777777766654
No 486
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.49 E-value=2.5e+02 Score=24.75 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHH
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 169 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~ 169 (1043)
|.+--.....++|..+.+=.-........+.+.+...++++|+|++|+.. ...... +.+--..+.|-+++|--+
T Consensus 13 AL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~-----~~~~~~-pdL~p~~AL~a~klGL~~ 86 (116)
T PF09477_consen 13 ALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLL-----PQCHCY-PDLEPWAALCAWKLGLAS 86 (116)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHH-----HTTS---GGGHHHHHHHHHHCT-HH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHh-----cccCCC-ccHHHHHHHHHHhhccHH
Confidence 33333344577888777655544443455667778889999999999321 111111 333445788999999998
Q ss_pred HHHHHHHHH
Q 001618 170 KARQAFQRA 178 (1043)
Q Consensus 170 ~A~~~~~~a 178 (1043)
++...+.+.
T Consensus 87 ~~e~~l~rl 95 (116)
T PF09477_consen 87 ALESRLTRL 95 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
No 487
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=40.59 E-value=5e+02 Score=28.00 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=23.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 129 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
..+++.+.+..+++.+..+|-. -+.++..+.++.++|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfW-LDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFW-LDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHCC
Confidence 4556666666666666666655 445566666666666
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.20 E-value=3.9e+02 Score=26.67 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=40.0
Q ss_pred hHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHcC
Q 001618 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA-IAKARNNLQLSIELVNEALKVNG 545 (1043)
Q Consensus 480 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p 545 (1043)
...+..+-......|+++.|-.+|--++...+-+......+|. ++...+......++++.+....|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 3455566666777788888888888888766655555555554 34444444333355555444443
No 489
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=39.70 E-value=27 Score=38.27 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=7.0
Q ss_pred CCchHHHHhhhcCCCC
Q 001618 989 PSITAARRRRALSESD 1004 (1043)
Q Consensus 989 ~~~~~~~~~~~~~~~~ 1004 (1043)
|.|.--.|+.-.|+++
T Consensus 151 pa~~~~~k~~qa~~ee 166 (807)
T KOG0066|consen 151 PASKKSKKKQQASEEE 166 (807)
T ss_pred CCChhhhhhhhhhHHH
Confidence 3344334444555443
No 490
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.48 E-value=71 Score=20.60 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVL 110 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l 110 (1043)
|..+...+...|+++.|..+|+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555555444
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.39 E-value=2.6e+02 Score=32.40 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 001618 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--- 112 (1043)
Q Consensus 36 ~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 112 (1043)
+...+-..|-|+++-.|... .|..|+-.+-.+-.+.|... -..++.+|.+++..
T Consensus 255 e~~~lqq~lLw~lyd~ghl~--------~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~ 311 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMGHLA--------RYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSART 311 (618)
T ss_dssp HHHHHHHHHHHHHHHTTTTT--------T-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchh--------hCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHH
Confidence 44445556677777777666 56677777777766666421 12234444444432
Q ss_pred --CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 113 --DRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 113 --~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
+..++..+..+|-.+++.++|.+|+..+..+
T Consensus 312 ~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 312 YYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 2234555666666677777777777666555
No 492
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=39.12 E-value=5e+02 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHH
Q 001618 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (1043)
.+.|...+.+++.++|....+...+..+-...|...
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 667888888888888888888887777776666653
No 493
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.87 E-value=4.7e+02 Score=29.32 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=24.4
Q ss_pred hHHHhHHHHHHHccCHHH--HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Q 001618 670 DVWINLAHVYFAQGNFAL--AMKMYQNCLRKFYY-NTDAQILLYLARTHYE 717 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~~~-~~~~~~l~~la~~~~~ 717 (1043)
+.|..+.-.+.-.|+|.+ |+..|+.-...|.- -....+|.+.|.-|.+
T Consensus 239 ~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 239 DLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVH 289 (493)
T ss_pred cEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhh
Confidence 455555555556666654 55555543332211 1124567777766655
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.34 E-value=3.1e+02 Score=31.82 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhc
Q 001618 363 RDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 439 (1043)
Q Consensus 363 ~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 439 (1043)
..+.++.+||.+- ....-..++.+|.+++......-......-|..+|-.|++.+++.+|+..+-.+-.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~-------- 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD-------- 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHH
Q 001618 440 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 519 (1043)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 519 (1043)
+...-+-..+-.++|+..+++..+-+...+.
T Consensus 347 -------------------------------------------------Vi~~YnY~reDeEiYKEfleIAneLiP~~lk 377 (618)
T PF05053_consen 347 -------------------------------------------------VIRKYNYSREDEEIYKEFLEIANELIPNVLK 377 (618)
T ss_dssp -------------------------------------------------HHTTSB--GGGHHHHHHHHHHHHTHHHHHHH
T ss_pred -------------------------------------------------HHHHcccCccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHHHHHhhhccchHH
Q 001618 520 LAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVK 566 (1043)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 566 (1043)
.........+...-..-=...-..+ ..++..+..+-.+|-..-.|++
T Consensus 378 ~~~~~~~~~~e~~~e~~~~~~~~~~il~Dpecfa~lLrFYDgIC~WEE 425 (618)
T PF05053_consen 378 SESSGHSARSERHREDSPITYQAGSILRDPECFANLLRFYDGICKWEE 425 (618)
T ss_dssp HHHCHHHT----------------GGGG-HHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCccccccccccccccchhhhccCHHHHHHHHHHHhhceeccc
No 495
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.97 E-value=4.3e+02 Score=27.13 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc-
Q 001618 550 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS- 628 (1043)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~- 628 (1043)
+++.+-++....+ ..+...|.....+.+. +.....|-+ ++.. ++++.|+..+ .+|.
T Consensus 50 ~~YlLlD~~~~~~--~~~~~~Fa~~f~ip~~---~~~~~~g~W-~LD~------------~~~~~A~~~L-----~~ps~ 106 (226)
T PF13934_consen 50 FYYLLLDLDDTRP--SELAESFARAFGIPPK---YIKFIQGFW-LLDH------------GDFEEALELL-----SHPSL 106 (226)
T ss_pred HHHHHHhcCcccc--ccHHHHHHHHhCCCHH---HHHHHHHHH-HhCh------------HhHHHHHHHh-----CCCCC
Q ss_pred cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHH
Q 001618 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 708 (1043)
Q Consensus 629 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 708 (1043)
.++....+..++...|+...|+.+++.+.-.. ..++....+..+ ...|...+|..+ .+.++.......+
T Consensus 107 ~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l------~s~~~~~~~~~~-La~~~v~EAf~~----~R~~~~~~~~~l~ 175 (226)
T PF13934_consen 107 IPWFPDKILQALLRRGDPKLALRYLRAVGPPL------SSPEALTLYFVA-LANGLVTEAFSF----QRSYPDELRRRLF 175 (226)
T ss_pred CcccHHHHHHHHHHCCChhHHHHHHHhcCCCC------CCHHHHHHHHHH-HHcCCHHHHHHH----HHhCchhhhHHHH
Q ss_pred HHHHHHHH----hhhcHHH
Q 001618 709 LYLARTHY----EAEQWQD 723 (1043)
Q Consensus 709 ~~la~~~~----~~g~~~~ 723 (1043)
..+-..++ ..+..++
T Consensus 176 e~l~~~~~~~~~~~~~~~~ 194 (226)
T PF13934_consen 176 EQLLEHCLEECARSGRLDE 194 (226)
T ss_pred HHHHHHHHHHhhhhhHHHH
No 496
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=37.85 E-value=1.6e+02 Score=34.42 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--Hhh----hccC
Q 001618 813 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVK--EQW----RSST 886 (1043)
Q Consensus 813 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~w----~~~~ 886 (1043)
.....++...+.+++..-+.|..+...+..-.++..+++++.+.+..++.++....+.+++.-++.. ||- |.+.
T Consensus 271 leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~rk~d 350 (811)
T KOG4364|consen 271 LEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKSRKSD 350 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred chhhhhhccCCCCcc
Q 001618 887 PASKRRERSENDDDE 901 (1043)
Q Consensus 887 ~~~~~~~~~~~~~~~ 901 (1043)
..+||.+++..+..+
T Consensus 351 eerkK~e~ke~ea~E 365 (811)
T KOG4364|consen 351 EERKKLESKEVEAQE 365 (811)
T ss_pred hhhhhhhhhHHHHHH
No 497
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=37.64 E-value=1.1e+02 Score=24.57 Aligned_cols=54 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 001618 826 QQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 883 (1043)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~ 883 (1043)
...-+++-+.++...+++.+|.++++.+...+++.+++ -+.+++-+....=-||
T Consensus 16 ~d~~~kLka~k~eLk~~ee~r~e~e~~~~~~erk~rEK----nksFeELL~eS~ldWr 69 (70)
T PF13025_consen 16 EDVLAKLKAKKQELKAEEEKRKEEERARRREERKEREK----NKSFEELLNESELDWR 69 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHhcccCCCC
No 498
>PTZ00121 MAEBL; Provisional
Probab=37.58 E-value=4.2e+02 Score=34.59 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001618 796 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHF 875 (1043)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1043)
+..+.....+--......+.+..+++++.|+..++..+..++.....+..|.+++++++++.++.++.+++......+..
T Consensus 1138 ~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEA 1217 (2084)
T PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEA 1217 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 001618 876 QRVKEQ 881 (1043)
Q Consensus 876 ~~~~e~ 881 (1043)
+...+.
T Consensus 1218 RraEEE 1223 (2084)
T PTZ00121 1218 RKAEDA 1223 (2084)
T ss_pred HHHHHH
No 499
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.42 E-value=5.1e+02 Score=27.23 Aligned_cols=176 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 001618 35 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK--GEVEQASSAFKIVLEA 112 (1043)
Q Consensus 35 ~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~~l~~ 112 (1043)
|+-.++++.-=.+... .......+.-.++.-+..+..+++.+|.+...|..+-.++-.. .++..-+.+.+.++..
T Consensus 63 pe~ytiwnyr~~I~~h---~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~ 139 (328)
T COG5536 63 PEFYTIWNYRFSILKH---VQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDS 139 (328)
T ss_pred HHHHHHHhhHHHHHhh---hhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcc
Q ss_pred CCCCHHHHHHHHHHH------HHcCChHHHHHHHHHHHHhCCCChhHHHHhH---HHHHHHcCC------HHHHHHHHHH
Q 001618 113 DRDNVPALLGQACVE------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGI---GLCRYKLGQ------LGKARQAFQR 177 (1043)
Q Consensus 113 ~p~~~~a~~~la~~~------~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~ 177 (1043)
+|.|...|...-.++ +....+..-+++-..++..++.+ ..+|... .......|+ +.+-+.+.-.
T Consensus 140 DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N-~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~ 218 (328)
T COG5536 140 DSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN-NSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFD 218 (328)
T ss_pred cccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC-hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q ss_pred HHhhCCCcHHHHHHHHHHHHH-hhhHHhHHHHHHHHHH
Q 001618 178 ALQLDPENVEALVALAVMDLQ-ANEAAGIRKGMEKMQR 214 (1043)
Q Consensus 178 al~~~p~~~~a~~~la~~~~~-~~~~~~~~~A~~~~~~ 214 (1043)
++-.+|++..+|..+-.+... .-+.-.+.+-+..+.+
T Consensus 219 ~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k 256 (328)
T COG5536 219 KIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGK 256 (328)
T ss_pred hhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHh
No 500
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=37.20 E-value=2.1e+02 Score=32.10 Aligned_cols=66 Identities=29% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001618 809 HLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 876 (1043)
Q Consensus 809 ~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1043)
.+.+.+--....-+.+|...|.++-++...+..+|.+|+++|.|...++.+.+++ =+..+|+-+++
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~~keee~arre--firqey~rrkq 455 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERAPKEEEVARRE--FIRQEYERRKQ 455 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhhhHHH--HHHHHHHHHHH
Done!