Query 001618
Match_columns 1043
No_of_seqs 1412 out of 4735
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 16:50:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001618.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_915-919//hhsearch_pdb/001618hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 339.8 45.8 505 116-749 83-594 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 335.0 49.1 487 81-679 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 313.8 46.3 382 89-528 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 310.9 51.1 378 303-749 5-383 (388)
5 3fp2_A TPR repeat-containing p 1.0 1 1 296.5 42.0 466 82-743 24-500 (537)
6 2gw1_A Mitochondrial precursor 1.0 1 1 293.4 42.7 255 478-749 235-493 (514)
7 3fp2_A TPR repeat-containing p 1.0 1 1 291.5 41.4 370 34-431 21-406 (537)
8 2gw1_A Mitochondrial precursor 1.0 1 1 285.3 45.8 465 83-711 6-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 267.9 45.9 361 67-562 10-377 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 258.0 42.5 348 257-749 23-373 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=339.77 Aligned_cols=505 Identities=12% Similarity=0.036 Sum_probs=384.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 98899998999998099399999999999849999057887599999980999899999999995298869999999999
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
++..+..++..+...|++++|+.+|.+++...|+. ..++.++.++...|++++|+..|.+++.. |.+..++..++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 99999999999987458347999999999608993--57999999999747699999999987335-4565089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99810077499999999999983988499999999999960998999999999985058998733899999999997299
Q 001618 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 275 (1043)
Q Consensus 196 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 275 (1043)
+...|+ +++|+..|.+ ..|...... .....+.
T Consensus 160 ~~~~g~---~~~A~~~~~~---~~~~~~~~~------------------------------------------~~~~~~~ 191 (597)
T 2xpi_A 160 LVKLYD---WQGALNLLGE---TNPFRKDEK------------------------------------------NANKLLM 191 (597)
T ss_dssp HHHTTC---HHHHHHHHCS---SCTTC----------------------------------------------------C
T ss_pred HHHHHH---HHHHHHHHHC---CCCCCCCCC------------------------------------------CCCCCCC
T ss_conf 998866---9999999842---488632232------------------------------------------3433432
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH--
Q ss_conf 999999999999840899987455898999999829979999999999987999699999999999972998999999--
Q 001618 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL-- 353 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-- 353 (1043)
.....+....+++.+|.++...|++++|+..|++++..+|.+..++..++.++...+....+...
T Consensus 192 -------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 192 -------------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp -------------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred -------------CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf -------------1123512589999988999983998999999999997293256999999985034615678999865
Q ss_pred -HHHHHHHCCCC-HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf -99999729999-99999999999-0299889999999999988861999869999999999998299899999999997
Q 001618 354 -LRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430 (1043)
Q Consensus 354 -~~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 430 (1043)
+......++.. ...+..++..+ ..|++++|+..+.+++.. + ....+++.++.++...|++++|+..|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-C-----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 7742344308899999999999980731399999999876438-8-----309999999999998468999999999999
Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 02022321134552035344566777656666542103788777898406888769999995599278999999999868
Q 001618 431 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 510 (1043)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 510 (1043)
.. .|....++..++.++...|++++|..++..++...
T Consensus 333 ~~-------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 333 EI-------------------------------------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HH-------------------------------------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HC-------------------------------------------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 72-------------------------------------------95537999999999998277779999999998518
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 69099999999999983993689999999998769995799998778610365689999999953138987769999756
Q 001618 511 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 590 (1043)
Q Consensus 511 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg 590 (1043)
|.+..++..++.++...|++++|+.+|++++...|.+..+|..++.++...|++++|+..|++++...|. +...+..++
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 448 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLG 448 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 3547999999999998356999999999998729777899999999999757779999999999986813-438999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCC-
Q ss_conf 29999977310148068866599999999999800855099997769999822990479999999999834898-7786-
Q 001618 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM- 668 (1043)
Q Consensus 591 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~- 668 (1043)
.+ |... |++++|+..|++++...|.++.++..++.++...|++++|+.+|+++++..|..+ .++.
T Consensus 449 ~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 449 MQ-HMQL------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HH-HHHH------------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99-9985------------7999999999999984888767999999999981899999999999998532345453549
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 15897699999970698899999999998852899999999999999862019999999999998399982034589999
Q 001618 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~ 748 (1043)
..+|.++|.+|...|++++|+..|++++.. .+.++.++..+|.+|...|++++|..+|+++++++|+++.++++++.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999804799999999999973--899738999999999981789999999999972088874899999998
Q ss_pred H
Q ss_conf 8
Q 001618 749 M 749 (1043)
Q Consensus 749 ~ 749 (1043)
|
T Consensus 594 ~ 594 (597)
T 2xpi_A 594 L 594 (597)
T ss_dssp T
T ss_pred H
T ss_conf 7
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=334.96 Aligned_cols=487 Identities=13% Similarity=0.048 Sum_probs=275.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99225999999999839998999999999983999988999989999980993999999999998499990578875999
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 160 (1043)
.++..|..++..+...|++++|+..|++++...|+ ...++.++.++...|++.+|+..|++++.. |.+ ..++..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS-SACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCC-HHHHHHHHH
T ss_conf 89999999999998745834799999999960899-357999999999747699999999987335-456-508999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998099989999999999529886-------------------999999999999810077499999999999983988
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPEN-------------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
+|...|++++|+..|++ ..|.. ..++..++.++...|+ +++|+..|.+++..+|.
T Consensus 159 ~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCH
T ss_conf 99988669999999842---4886322323433432112351258999998899998399---89999999999972932
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 49999999999996099899999999998505899873389999999999729999999999999984089998745589
Q 001618 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 301 (1043)
+..++..++.++...+....+.. ... . +...... ........+.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~--~~l-~-------------------------------~~~~~~~--~~~~~~~~~~ 276 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLV--LKL-N-------------------------------YSTYSKE--DAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHH--HHS-C-------------------------------THHHHGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHH--HHC-C-------------------------------CCCCCCC--HHHHHHHHHH
T ss_conf 56999999985034615678999--865-7-------------------------------7423443--0889999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCH
Q ss_conf 89999998299799999999999879996999999999999729989999999999972999999999999999-02998
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
.++..+...|++++|+..|.+++.. |.+..++..++.++...|++++|+..|++++...|.+..++..++.++ ..|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 9999980731399999999876438-830999999999999846899999999999972955379999999999982777
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999988861999869999999999998299899999999997020223211345520353445667776566
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
++|+..+..++...+. ...+++.++.+|...|++++|+.+|.+++.
T Consensus 356 ~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------- 401 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPE-----KAVTWLAVGIYYLCVNKISEARRYFSKSST----------------------------- 401 (597)
T ss_dssp HHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----------------------------
T ss_conf 7999999999851835-----479999999999983569999999999987-----------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 66542103788777898406888769999995599278999999999868690999999999999839936899999999
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
..|....++..++.++...|++++|+.+|++++...|.+..++..++.++...|++++|..+|+++
T Consensus 402 --------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 402 --------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf --------------297778999999999997577799999999999868134389999999999857999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC----CCC--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 987699957999987786103656899999999531389----877--69999756299999773101480688665999
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD----GKD--SYATLSLGNWNYFAALRNEKRAPKLEATHLEK 614 (1043)
Q Consensus 541 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~--~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 614 (1043)
+...|.++.++..++.++...|++++|+..|++++...+ .++ ...+..+|.+ |... |++++
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~ 534 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA-YRKL------------KMYDA 534 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH-HHHT------------TCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHH------------CCHHH
T ss_conf 9848887679999999999818999999999999985323454535499999999999-9980------------47999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999800855099997769999822990479999999999834898778615897699999
Q 001618 615 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 615 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
|+..|++++..+|.+..++..++.++...|++++|+.+|+++++..| +++.++..++.+|
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHH
T ss_conf 99999999973899738999999999981789999999999972088-----8748999999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=313.81 Aligned_cols=382 Identities=22% Similarity=0.281 Sum_probs=183.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 99999983999899999999998399998899998999998099399999999999849999057887599999980999
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 168 (1043)
+|..++..|++++|+..|..++..+|+++.++..++.+++..|++++|+..+..++..+|.. ...+..+|.++...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCH
T ss_conf 79999877999999999999998497889999999999998689999999999997619786-69999999999877999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89999999999529886999999999999810077499999999999983988499999999999960998999999999
Q 001618 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 248 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (1043)
++|+..|++++..+|++..++..++.++...|+ +++|+..|.+++..+|....++..++.++...|++++|+..+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999987496539999999999998589---99999999999975989689999999999984689999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 98505899873389999999999729999999999999984089998745589899999982997999999999998799
Q 001618 249 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328 (1043)
Q Consensus 249 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 328 (1043)
++... |....++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..+.+++...|
T Consensus 161 al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 161 AIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 98729---89789999999999985999999999999985---5988679999999999985789999999999985296
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 96999999999999729989999999999972999999999999999-02998899999999999888619998699999
Q 001618 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 407 (1043)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 407 (1043)
++..++..+|.++...|++++|+..|++++...|.++.++..++.++ ..|++++|+..+++++...|. .+.++.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 309 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSLN 309 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----CHHHHH
T ss_conf 878999999999998688999999999998649998899999999999869979999999999864944-----499999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999998299899999999997020223211345520353445667776566665421037887778984068887699
Q 001618 408 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 487 (1043)
Q Consensus 408 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 487 (1043)
.++.++...|++++|+..|++++. ..|....++..++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNLA 346 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------CCCCCHHHHHHHH
T ss_conf 999999984899999999999986-------------------------------------------0987399997799
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99995599278999999999868690999999999999839
Q 001618 488 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 528 (1043)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 528 (1043)
.++...|++++|+..|++++..+|++..++..+|.++...|
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99998688899999999998619997899985999998745
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=310.92 Aligned_cols=378 Identities=20% Similarity=0.255 Sum_probs=194.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHH
Q ss_conf 9999998299799999999999879996999999999999729989999999999972999999999999999-029988
Q 001618 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 381 (1043)
Q Consensus 303 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 381 (1043)
+|..++..|++++|+..+..++...|++..++..++.++...|++++|...+..++..+|.+..++..+|.++ ..|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 79999877999999999999998497889999999999998689999999999997619786699999999998779999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999888619998699999999999982998999999999970202232113455203534456677765666
Q 001618 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 461 (1043)
Q Consensus 382 ~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (1043)
+|+..|++++...|. ....+..+|.++...|++++|+..|.+++.
T Consensus 85 ~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------------ 129 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ------------------------------ 129 (388)
T ss_dssp HHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------
T ss_conf 999999999874965-----399999999999985899999999999997------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 65421037887778984068887699999955992789999999998686909999999999998399368999999999
Q 001618 462 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541 (1043)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (1043)
..|....++..+|.++...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++
T Consensus 130 -------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 130 -------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp -------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -------------5989689999999999984689999999999987298978999999999998599999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87699957999987786103656899999999531389877699997562999997731014806886659999999999
Q 001618 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621 (1043)
Q Consensus 542 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 621 (1043)
..+|.++.++..+|.++...|++++|+..|.+++...|. +...+..+|.+ |... |++++|+..|++
T Consensus 197 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~ 262 (388)
T 1w3b_A 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTYRR 262 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHH
T ss_conf 559886799999999999857899999999999852968-78999999999-9986------------889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 98008550999977699998229904799999999998348987786158976999999706988999999999988528
Q 001618 622 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 622 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 701 (1043)
++..+|.++.++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|++++.. .
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 335 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV--F 335 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C
T ss_conf 9864999889999999999986997999999999986494-----44999999999999848999999999999860--9
Q ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999999999999998620199999999999983999820345899998
Q 001618 702 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 702 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~~ 749 (1043)
|.++.++..+|.++...|++++|...|++++.+.|+++.+++++|.++
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 873999977999999868889999999999861999789998599999
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=296.46 Aligned_cols=466 Identities=13% Similarity=0.103 Sum_probs=270.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 92259999999998399989999999999839999889999899999809939999999999984999905788759999
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 161 (1043)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++.+|+..|++++..+|++ ..+++.+|.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
T ss_conf 899999999999986429999999999986389984899999999998689999999999998609862-8999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99809998999999999952988699999999999981007749999999999998398849999999999996099899
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+..+|++++|+..|+ ++..+|+....+.. .+...+. ...++..+..++...|.....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~~~---------------- 159 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRGSQ---------------- 159 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------C----------------
T ss_pred HHHCCCHHHHHHHHH-HHHCCCCCCHHHHH---HHHHHHH---HHHHHHHHHHHHHHCCCCCCC----------------
T ss_conf 998389999999999-98648787858899---9998778---988999999999747454543----------------
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999850589987338999999999972999999999999998408999874558989999998299799999999
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
..|.. .....+....+...++..+..... ..+........++.++.
T Consensus 160 -------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~------------- 205 (537)
T 3fp2_A 160 -------------VLPSN-----TSLASFFGIFDSHLEVSSVNTSSN---YDTAYALLSDALQRLYS------------- 205 (537)
T ss_dssp -------------CCCCH-----HHHHHHHHTSCHHHHHHTSCCCCS---SCSSHHHHHHHHHHHHT-------------
T ss_pred -------------CCCHH-----HHHHHHHHHCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHH-------------
T ss_conf -------------45067-----579999974474999998763256---46178999999987887-------------
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99987999699999999999972998999999999997299999999999999902998899999999999888619998
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 401 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 401 (1043)
. ..+......+++++|+..|++++...|.+...+..++.
T Consensus 206 -------~------~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~---------------------------- 244 (537)
T 3fp2_A 206 -------A------TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL---------------------------- 244 (537)
T ss_dssp -------C------SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH----------------------------
T ss_pred -------H------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----------------------------
T ss_conf -------6------40206888879999999999999878774044599999----------------------------
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 69999999999998299899999999997020223211345520353445667776566665421037887778984068
Q 001618 402 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 481 (1043)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1043)
++..+|.++...|++++|+..|.+++.. .|. ..
T Consensus 245 ---~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------------------------------------------~~~-~~ 277 (537)
T 3fp2_A 245 ---ALCYTGIFHFLKNNLLDAQVLLQESINL-------------------------------------------HPT-PN 277 (537)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------CCC-HH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------------------CCC-CH
T ss_conf ---9999999987545578999999999866-------------------------------------------987-46
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 88769999995599278999999999868690999999999999839936899999999987699957999987786103
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (1043)
+++.+|.++...|++++|+..+.+++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------- 349 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ-------- 349 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH--------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH--------
T ss_conf 999999999980379999999999754599987999999999986689999999999999859997799999--------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 65689999999953138987769999756299999773101480688665999999999998008550999977699998
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 641 (1043)
+|.+ |+.. |++++|+..|.+++..+|.+..++..+|.++.
T Consensus 350 ---------------------------la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 350 ---------------------------LACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp ---------------------------HHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ---------------------------HHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---------------------------9999-9984------------77999999999998739998599999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 2299047999999999983489877-8615897699999970----------6988999999999988528999999999
Q 001618 642 EKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNTDAQILLY 710 (1043)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~l~~ 710 (1043)
..|++++|+..|++++...|..... .....++.+|.++... |++.+|+..|++++.. .+.++.++..
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 467 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIG 467 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_conf 83788999999999987097624468889999988999999764010022475799999999999974--9997899999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 999998620199999999999983999820345
Q 001618 711 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 743 (1043)
Q Consensus 711 la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~ 743 (1043)
+|.++...|++++|..+|++++.+.|.+.....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999851499999999999986899388888
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=293.39 Aligned_cols=255 Identities=14% Similarity=0.126 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 40688876999999559927899999999986869099999999999983993689999999998769995799998778
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (1043)
....+++.+|.++...|++++|+..+++++...|. ..++..++.++...|++++|+..+++++...|.++.++..++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 78999999999999878999999999999863864-89999999999988889999999999861386778999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 61036568999999995313898776999975629999977310148068866599999999999800855099997769
Q 001618 558 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 637 (1043)
Q Consensus 558 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 637 (1043)
+...|++++|+..|.+++...|. +...+..+|.+ |... |++++|+..|.+++...|.+..++..+|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99807799999999999873850-28999999999-9986------------8999999999999987546778999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998229904799999999998348987-7861589769999997---06988999999999988528999999999999
Q 001618 638 VVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
.++...|++++|+.+|++++...|.... .....+++++|.++.. .|++++|+..|++++.. .+.++.++..+|.
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 457 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_conf 99987889999999999999761233217899999999999986633258889999999999875--8555899999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 998620199999999999983999820345899998
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~~ 749 (1043)
++...|++++|...|++++.+.|+++.++..+.+..
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999825799999999999876614688999999999
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=291.49 Aligned_cols=370 Identities=16% Similarity=0.157 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 89899999999999997012232355679999999999999861299992259999999998399989999999999839
Q 001618 34 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 113 (1043)
Q Consensus 34 ~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 113 (1043)
.......+..+|..|...|++. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 0788999999999999864299-----------99999999986389984899999999998689999999999998609
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH---H
Q ss_conf 9998899998999998099399999999999849999057887599999980999899999999995298869999---9
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 190 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 190 (1043)
|.++.+++.+|.++...|++++|+..|+ ++...|+.... + ...+...+....|+..+..++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCCCHH-H---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 8628999999999998389999999999-98648787858-8---99999877898899999999974745454345067
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCCC----
Q ss_conf 999999981007749999999999998398849999999999996--------09989999999999850589987----
Q 001618 191 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF--------TGQHFLVEQLTETALAVTNHGPT---- 258 (1043)
Q Consensus 191 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~---- 258 (1043)
.....+....+ ...++..+.+.....+........+..++.. .|++.+|+.++..++...+.++.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred HHHHHHHHHCC---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 57999997447---499999876325646178999999987887640206888879999999999999878774044599
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 33899999999997299999999999999840899987455898999999829979999999999987999699999999
Q 001618 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338 (1043)
Q Consensus 259 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 338 (1043)
...++..+|.++...|++++|+..|.+++. ..|. ..++..+|.++...|++++|+..+.+++...|.++.++..+|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999998754557899999999986---6987-469999999999803799999999997545999879999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999729989999999999972999999999999999-029988999999999998886199986999999999999829
Q 001618 339 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 417 (1043)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g 417 (1043)
.++...|++++|+..|.+++...|.+..++..++.++ ..|++++|+..+.+++...|. .+.++..+|.++...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHC
T ss_conf 99986689999999999999859997799999999999847799999999999873999-----8599999999998837
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 98999999999970
Q 001618 418 EFESAHQSFKDALG 431 (1043)
Q Consensus 418 ~~~~A~~~~~~al~ 431 (1043)
++++|+..|++++.
T Consensus 393 ~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 393 DFDTAIKQYDIAKR 406 (537)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 88999999999987
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=285.33 Aligned_cols=465 Identities=13% Similarity=0.115 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22599999999983999899999999998399998899998999998099399999999999849999057887599999
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 162 (1043)
+..++.+|..++..|++++|+..|++++..+| ++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
T ss_conf 79999987899986027899999999985592-27899868899998854999999998776069378-99999888999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 98099989999999999529886999999999999810077499999999999983988499999999999960998999
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 242 (1043)
..+|++++|+..|++++...|.+......+..............+++..+..+... |........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-------------- 148 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPA-------------- 148 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHH--------------
T ss_conf 98766888999999999559875113789999999999999999999989999876-651267724--------------
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998505899873389999999999729999999999999984089998745589899999982997999999999
Q 001618 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322 (1043)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 322 (1043)
.+ . ....+..|..... ..+............+
T Consensus 149 -----------------------~~--------------~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 180 (514)
T 2gw1_A 149 -----------------------KE--------------R----KDKQENLPSVTSM-----ASFFGIFKPELTFANY-- 180 (514)
T ss_dssp -------------------------------------------------CCCCHHHH-----HHHHTTSCCCCCCSSC--
T ss_pred -----------------------HH--------------H----HHHCCCCCHHHHH-----HHHHHHCCHHHHHHHH--
T ss_conf -----------------------67--------------8----8634478615899-----9998625878888872--
Q ss_pred HHHHCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 998799969999999999997---2998999999999997-----2--99999999999999902998899999999999
Q 001618 323 VLEIYPDNCETLKALGHIYVQ---LGQIEKAQELLRKAAK-----I--DPRDAQAFIDLGELLISSDTGAALDAFKTART 392 (1043)
Q Consensus 323 ~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~ 392 (1043)
..|.+...+..++.++.. .|++++|+..|.+++. . .|.+....
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 233 (514)
T 2gw1_A 181 ---DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK------------------------ 233 (514)
T ss_dssp ---CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH------------------------
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------
T ss_conf ---59958889999899998762332299999999999988665422381001148------------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88861999869999999999998299899999999997020223211345520353445667776566665421037887
Q 001618 393 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 472 (1043)
Q Consensus 393 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1043)
+. .+.++..+|.++...|++++|+..|.+++..
T Consensus 234 --~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------------------------------------- 266 (514)
T 2gw1_A 234 --EK-----LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------------------------------- 266 (514)
T ss_dssp --HH-----HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----------------------------------------
T ss_pred --HH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------------------
T ss_conf --27-----8999999999999878999999999999863----------------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 77898406888769999995599278999999999868690999999999999839936899999999987699957999
Q 001618 473 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 552 (1043)
Q Consensus 473 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (1043)
.|. ..++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+.++++++...|.++.++.
T Consensus 267 ---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 267 ---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp ---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred ---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf ---864-8999999999998888999999999986138677899999999999807799999999999873850289999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH-
Q ss_conf 9877861036568999999995313898776999975629999977310148068866599999999999800855099-
Q 001618 553 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY- 631 (1043)
Q Consensus 553 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~- 631 (1043)
.+|.++...|++++|+..|.+++...|. +...+..+|.+ |... |++++|+..|.+++...|.+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEI-LTDK------------NDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9999999868999999999999987546-77899999999-9878------------89999999999999761233217
Q ss_pred -----HHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf -----99776999982---2990479999999999834898778615897699999970698899999999998852899
Q 001618 632 -----AANGAGVVLAE---KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 703 (1043)
Q Consensus 632 -----a~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 703 (1043)
++..+|.++.. .|++++|+..|++++...| +++.++..+|.+|...|++.+|+..|++++.. .+.
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~ 481 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ART 481 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCC
T ss_conf 89999999999998663325888999999999987585-----55899999999999825799999999999876--614
Q ss_pred CHHHHHHH
Q ss_conf 99999999
Q 001618 704 DAQILLYL 711 (1043)
Q Consensus 704 ~~~~l~~l 711 (1043)
++.++..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 68899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=267.88 Aligned_cols=361 Identities=19% Similarity=0.172 Sum_probs=300.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999861299992259999999998399989999999999839999889999899999809939999999999984
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 146 (1043)
.+...+..++..+|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 44656423566537899999999999998799999999999999849716899999999999879979999999999844
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999057887599999980999899999999995298869---9999999999981007749999999999998398849
Q 001618 147 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 147 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 223 (1043)
+|.. ..++..+|.++..+|++++|+..|++++..+|.+. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-------------------------
T ss_conf 9874-89999999999986999999999999972499970168899999999999-------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999999609989999999999850589987338999999999972999999999999998408999874558989
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 303 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 303 (1043)
..++.+|.++...|++++|+..|.+++. ..|....++..+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHH
T ss_conf -------------------------------------9999999999986899999999999998---688976999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999829979999999999987999699999999999972998999999999997299999999999999902998899
Q 001618 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 383 (1043)
Q Consensus 304 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A 383 (1043)
|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+..|++++...|.+...+..+..+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
T ss_conf 999987799999999999999868898799999999999759999999999999875998089999999999--------
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988861999869999999999998299899999999997020223211345520353445667776566665
Q 001618 384 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 463 (1043)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1043)
.......+|.++...|++++|+.+|.+++...
T Consensus 256 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------ 287 (450)
T 2y4t_A 256 ------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE------------------------------ 287 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------------------------------
T ss_conf ------------------99999999999987179999999999998508------------------------------
Q ss_pred HHHCCCCCCCCCCCCH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4210378877789840----688876999999559927899999999986869099999999999983993689999999
Q 001618 464 HRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539 (1043)
Q Consensus 464 ~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (1043)
|.. ...+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.++++
T Consensus 288 -------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 288 -------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf -------------7336899999999999999878899999999999884845489999999999870379999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99876999579999877861036
Q 001618 540 ALKVNGKYPNALSMLGDLELKND 562 (1043)
Q Consensus 540 al~~~p~~~~~~~~la~~~~~~g 562 (1043)
++.+.|+++.++..++.+....+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 98859352999999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=258.03 Aligned_cols=348 Identities=15% Similarity=0.171 Sum_probs=180.6
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 87338999999999972999999999999998408999874558989999998299799999999999879996999999
Q 001618 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 336 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 336 (1043)
|..+..++.+|..+...|++++|+..|.+++. ..|....+++.+|.++...|++++|+..|.+++...|.+..++..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 78999999999999987999999999999998---497168999999999998799799999999998449874899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999972998999999999997299999---999999999902998899999999999888619998699999999999
Q 001618 337 LGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413 (1043)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 413 (1043)
+|.++...|++++|+..|++++...|.+. .++..++.++ ....+..+|.++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------~~~~~~~~a~~~ 153 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD--------------------------EMQRLRSQALNA 153 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
T ss_conf 999999869999999999999724999701688999999999--------------------------999999999999
Q ss_pred HHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98299899999999997020223211345520353445667776566665421037887778984068887699999955
Q 001618 414 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 493 (1043)
Q Consensus 414 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 493 (1043)
...|++++|+..|.+++. ..|....++..+|.++...
T Consensus 154 ~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILE-------------------------------------------VCVWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHHHHHC
T ss_conf 986899999999999998-------------------------------------------6889769999999999877
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99278999999999868690999999999999839936899999999987699957999987786103656899999999
Q 001618 494 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 494 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 573 (1043)
|++++|+..|.+++..+|.++.++..++.++...|++++|+..+++++...|.+...+..++.+.
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--------------- 255 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------------- 255 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------
T ss_conf 99999999999999868898799999999999759999999999999875998089999999999---------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 53138987769999756299999773101480688665999999999998008550999977699998229904799999
Q 001618 574 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 653 (1043)
Q Consensus 574 ~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 653 (1043)
. ......+|.++...|++++|+.+|
T Consensus 256 -------------------------------------~------------------~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 256 -------------------------------------K------------------LNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp -------------------------------------H------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------------------------------------H------------------HHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -------------------------------------9------------------999999999998717999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99999834898778615897699999970698899999999998852899999999999999862019999999999998
Q 001618 654 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 733 (1043)
Q Consensus 654 ~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~ 733 (1043)
++++...|.... ....++.++|.++...|++.+|+..|++++.. .+.++.++..+|.++...|++++|...|++++.
T Consensus 281 ~~~l~~~p~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 281 ESVMKTEPSIAE-YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHCCSSHH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999850873368-99999999999999878899999999999884--845489999999999870379999999999988
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 3999820345899998
Q 001618 734 LAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 734 ~~P~~~~~~~~la~~~ 749 (1043)
+.|+++.++..++.+.
T Consensus 358 ~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQ 373 (450)
T ss_dssp TSSSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
T ss_conf 5935299999999999
Done!