BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001619
         (1043 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
          Length = 641

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 210/400 (52%), Gaps = 30/400 (7%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DF+ WT LL  +E    + +      +D+FLA +P CYGYW+KYAD + +  +I +  EV
Sbjct: 69  DFNTWTYLLQYVEQE--NHLFAARKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEV 126

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFEDPND------VRRLFKRALSFVGKDYLCHTMWD 149
           + R +Q+ T SVD+W HY +    T  DP D      +R  F+ A+   G D+    +W+
Sbjct: 127 YRRGIQAITLSVDLWMHYLNFLKETL-DPADPETSLTLRGTFEHAVVSAGLDFRSDKLWE 185

Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
            YI +E  Q   S +  I+ + L  P++    ++  FK+ + G    E    S+  +E +
Sbjct: 186 MYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF-LTSEKFIELR 244

Query: 209 SEL---VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
            EL    L G       +D+  S ++++ DP+    R+  ++  R    ++++E   L+E
Sbjct: 245 KELASMTLHGGT-----NDDIPSGLEEIKDPAK---RTTEVENMRHRIIEVHQEIFNLNE 296

Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
               KI  FE  I+RPYFHVKPL+  QL NW +YL F  + G  + +V L+ERC+I CA 
Sbjct: 297 HEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILFERCVIACAC 356

Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381
           Y EFW++Y  +ME+    E   +  +RA  + L + P++HL  A ++EQ G+   AR   
Sbjct: 357 YEEFWIKYAKYMENHSV-EGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQGNLEEARRIL 415

Query: 382 PESYIDSDSRFIEKVTF-KANMERRLGNFVAACDTYKEAL 420
               I++    +  V   + N+ERR GN   A    +EA+
Sbjct: 416 KN--IETAIEGLAMVRLRRVNLERRHGNVKEAEHLLEEAM 453


>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=prp39 PE=3 SV=1
          Length = 612

 Score =  197 bits (501), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 19/381 (4%)

Query: 36  DFDEWTSLLSEIE--------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC 87
           DFD W  L+   E        NS    I  +  VYD FL ++PL +GYW+KYAD +  + 
Sbjct: 27  DFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVA 86

Query: 88  SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTM 147
             +    ++ER +    +SVD+W +YC+  M T  D N+VR LF +  + VG D+L H  
Sbjct: 87  GAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPF 146

Query: 148 WDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207
           WDKY+EFE  Q+R  ++ Q+  + +  P  +   Y++ F +++ +   +     D     
Sbjct: 147 WDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASI 206

Query: 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKI 267
           ++++  E   PA      +  +  +     +++ R    + Y  I  QI+++      K 
Sbjct: 207 RADVTRE---PAKVVSAGSKQITVE--RGELEIEREMRARIYN-IHLQIFQKVQLETAKR 260

Query: 268 NCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM 327
             FE+ I+RPYFHVK LD+ QL NW  YL F E +GDF  +  LYERCLI CA Y EFW 
Sbjct: 261 WTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWF 320

Query: 328 RYVDFMESKGGR-EIASYALDRATQIF--LKRLPVIHLFNARYKEQIGDTSAARAAFPES 384
           RY  +M ++       S   +RA+ IF  + R P I +  A ++E  G+ ++A+A + +S
Sbjct: 321 RYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRVQYALFEESQGNIASAKAIY-QS 378

Query: 385 YIDSDSRFIEKVTFKANMERR 405
            +      +E V     +ERR
Sbjct: 379 ILTQLPGNLEAVLGWVGLERR 399


>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
          Length = 669

 Score =  195 bits (496), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 202/405 (49%), Gaps = 30/405 (7%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DF  W  LL  +E    + +      +D F   +P CYGYW+KYAD + R  +I    EV
Sbjct: 94  DFTGWVYLLQYVEQE--NHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEV 151

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFE--DP---NDVRRLFKRALSFVGKDYLCHTMWDK 150
           + R +Q+   SVD+W HY +    T +  DP   N +R  F+ A+   G D+    +W+ 
Sbjct: 152 YRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEM 211

Query: 151 YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210
           YI +E  Q     +  I+ + L  P++   H++  FK+             +  ++ + E
Sbjct: 212 YINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRE 271

Query: 211 LVLEGEVPAYYKDD-----ETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
           L     V  +  DD     +  S I+D+ DP+  L+      ++R I  +I++E    +E
Sbjct: 272 L---ASVNGHSGDDGPPGDDLPSGIEDITDPA-KLITEIENMRHRII--EIHQEMFNYNE 325

Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
               K   FE  I+RPYFHVKPL+  QLKNW +YL F  + G  + VV L+ERC+I CA 
Sbjct: 326 HEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCAL 385

Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR--- 378
           Y EFW++Y  +ME+    E   +   RA  I L + P++H+  A ++EQ G+ + AR   
Sbjct: 386 YEEFWIKYAKYMENH-SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNIL 444

Query: 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423
             F E  +      + +V+    +ERR GN   A    ++A++ A
Sbjct: 445 KTFEECVLGLAMVRLRRVS----LERRHGNLEEAEHLLQDAIKNA 485


>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
          Length = 752

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 212/442 (47%), Gaps = 34/442 (7%)

Query: 14  EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIG--LVYDSFLAEFPL 71
           EP  P  + +  L + + +   DF+ W  LL  +E     +  ++G    +D+F   +P 
Sbjct: 145 EPELPTEYER--LSKVVEDNPEDFNGWVYLLQYVEQ----ENHLLGSRKAFDAFFLHYPY 198

Query: 72  CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSL-----SMSTFEDPND 126
           CYGYW+KYAD + +   I    EV+ R +Q+   SVD+W HY +        S  E  + 
Sbjct: 199 CYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESR 258

Query: 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186
           +R  ++ A+   G D+    +W+ YI +E  Q + +++  I+ + L  P++    ++  F
Sbjct: 259 IRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKF 318

Query: 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSS-------VIKDLLDPS-- 237
           K    +   +     +  +  + EL      P+  +D ET +         +DL DP+  
Sbjct: 319 KDHVQSNNPKHFLSEEEFVSLRVELA-NANKPSGDEDAETEAPGEELPPGTEDLPDPAKR 377

Query: 238 ---VDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294
              ++ +R K I+  + +      E S    K   FE  I+RPYFHVK L+  QL NW +
Sbjct: 378 VTEIENMRHKVIETRQEMFNHNEHEVS----KRWAFEEGIKRPYFHVKALEKTQLNNWRE 433

Query: 295 YLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFL 354
           YL F  + G  + VV L+ERCLI CA Y EFW++Y  ++ES    E   +   +A  + L
Sbjct: 434 YLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESY-STEAVRHIYKKACTVHL 492

Query: 355 KRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414
            + P +HL  A ++EQ G    AR+      +      + ++  + ++ERR GN   A  
Sbjct: 493 PKKPNVHLLWAAFEEQQGSIDEARSILKAVEVSVPGLAMVRLR-RVSLERRHGNMEEAEA 551

Query: 415 TYKEALETA--AEQRKFHTLPL 434
             ++A+     + +  F+++ L
Sbjct: 552 LLQDAITNGRNSSESSFYSVKL 573


>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
          Length = 665

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 207/436 (47%), Gaps = 36/436 (8%)

Query: 7   NLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66
           NL    AE + P  F K    + +     DF  W  LL  +E    + +      +D F 
Sbjct: 65  NLPVTEAEGDFPPEFEK--FWKTVEMNPQDFTGWVYLLQYVEQE--NHLMAARKAFDKFF 120

Query: 67  AEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126
             +P CYGYW+KYAD + R  +I +  EV+ R +Q+   SVD+W HY +    T E P D
Sbjct: 121 VHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLE-PGD 179

Query: 127 ------VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
                 +R  F+ A+   G D+    +W+ YI +E  Q     +  ++ + L  P++   
Sbjct: 180 QETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYS 239

Query: 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKD-----DETSSVIKDLLD 235
           H++  FK+             +  ++ + EL     V  +  D     D+  S I+D+  
Sbjct: 240 HHFQRFKEHVQNNLPRDLLTGEQFIQLRREL---ASVNGHSGDDGPPGDDLPSGIEDI-- 294

Query: 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDE----KINCFENLIRRPYFHVKPLDDIQ-LK 290
               L+      ++R I  +I++E    +E    K   FE  I+RPYFHVKPL+  Q  K
Sbjct: 295 SPAKLITEIENMRHRII--EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKK 352

Query: 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRAT 350
           NW +YL F  + G  + VV L+ERC+I CA Y EFW++Y  +ME+    E   +   RA 
Sbjct: 353 NWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENH-SIEGVRHVFSRAC 411

Query: 351 QIFLKRLPVIHLFNARYKEQIGDTSAARA---AFPESYIDSDSRFIEKVTFKANMERRLG 407
            + L + P+ H+  A ++EQ G+ + AR     F E  +      + +V+    +ERR G
Sbjct: 412 TVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVS----LERRHG 467

Query: 408 NFVAACDTYKEALETA 423
           N   A    ++A++ A
Sbjct: 468 NMEEAEHLLQDAIKNA 483


>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
           PE=1 SV=1
          Length = 1066

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 30  IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI 89
           + E S DF  WT LL  ++N    D E     YD+FL+ +P CYGYWRKYAD++ R    
Sbjct: 372 VKEDSTDFTGWTYLLQYVDNES--DAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIK 429

Query: 90  DKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-EDPNDVRRLFKRALSFVGKDYLCHTMW 148
               +VFER +++   SVD+W HY     S   +D   VR  ++RA+   G ++    +W
Sbjct: 430 ANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLW 489

Query: 149 DKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKL 189
           D YI +E   +R+  + QI+ + L  P++  + ++D+F+ L
Sbjct: 490 DAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDL 530



 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 13/218 (5%)

Query: 228 SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287
           S +  L D  V  +R +AI   R    +++K           FE  I+RPYFHVKPL+  
Sbjct: 648 SDLSTLNDEEVVSIRDRAISARR----KVHKLTVSAVTARWSFEEGIKRPYFHVKPLERA 703

Query: 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES----KGGREIAS 343
           QLKNW DYL F  ++GD + V+ L+ERCLI CA Y EFW++ + ++ES     G  ++  
Sbjct: 704 QLKNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVR 763

Query: 344 YALDRATQIFLKRLPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTF-KAN 401
               RA +I     P +HL  A ++E Q+    AA        ID     + ++++ + N
Sbjct: 764 DVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEIL---QRIDQRCPNLLQLSYRRIN 820

Query: 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439
           +ERR G      + YK  +E+   +    +L + Y +F
Sbjct: 821 VERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARF 858


>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
          Length = 629

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 74/350 (21%)

Query: 8   LESLSAEPNSPVGFGKQGLEEFIA----EGSLDFDEWTSL---LSEIENSC-----PDDI 55
           +E +   P++  G   Q L++  A       LD+ + +SL   +  IE +      P+D 
Sbjct: 9   IEDIEPRPDALRGLDTQFLQDNTALVQAYRGLDWSDISSLTQMVDVIEQTVVKYGNPNDS 68

Query: 56  EMIGL--VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113
             + L  +    L ++PL +G+W+++A  + +L  + K + V   +V+    S+++W  Y
Sbjct: 69  IKLALETILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDY 128

Query: 114 CSLSMSTFEDPND---VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ 170
             L++    +PN+   +R  F+ A   +GK +L H  WDK+IEFE+ Q+ W ++ +I+  
Sbjct: 129 --LNVLCVNNPNETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEY 186

Query: 171 TLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVI 230
            +  P  +   ++ S+KK                                          
Sbjct: 187 IIEVPLHQYARFFTSYKK------------------------------------------ 204

Query: 231 KDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK 290
                     +  K ++  R I   + K  + ++E I  FE+ I++P+F++  + +  L+
Sbjct: 205 ---------FLNEKNLKTTRNIDIVLRKTQTTVNE-IWQFESKIKQPFFNLGQVLNDDLE 254

Query: 291 NWHDYLSFA---EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337
           NW  YL F     K  D ++V+ +++RCLIPC  +   WM Y+ ++  K 
Sbjct: 255 NWSRYLKFVTDPSKSLDKEFVMSVFDRCLIPCLYHENTWMMYIKWLTKKN 304


>sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0175
            PE=4 SV=1
          Length = 4662

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 32/205 (15%)

Query: 817  GYRGHSHKRQH--QQRRFSSQRYPRNESGDQMPMNSRFPSQPLPS---QNPQAQQGSQAQ 871
            GY  H   +Q   QQ R   +R  +     +     R   + L     Q  + QQ    Q
Sbjct: 4198 GYSTHDMNQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQERLQQ 4257

Query: 872  SQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSN- 930
             +       Q W  Q +QQ+ +  +   +         +++ +   S        LQ N 
Sbjct: 4258 ERLQQERLQQKWEQQKIQQELYQKSHNDK---------ESETNNSSSYQELNNHTLQENT 4308

Query: 931  LAYNQMWQYYYYQQQQQQQL----------FLQQQHLQLQQQHLQPLQQQQFVQQQQYQQ 980
            +A + M Q+ + + +QQ+ +           LQ + ++ QQ     LQQQ + QQ   Q 
Sbjct: 4309 IAKDSMRQHIFLKTRQQENIPKELQKMHSHQLQTEKMKTQQLSAHSLQQQMYPQQMTSQV 4368

Query: 981  QHSLY-------LQQQPQHQQLEQY 998
              S +       LQQQ  HQQ+ ++
Sbjct: 4369 HSSFHAQKIKQQLQQQMNHQQINKH 4393


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,465,533
Number of Sequences: 539616
Number of extensions: 16766622
Number of successful extensions: 195215
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 1024
Number of HSP's that attempted gapping in prelim test: 74806
Number of HSP's gapped (non-prelim): 35187
length of query: 1043
length of database: 191,569,459
effective HSP length: 128
effective length of query: 915
effective length of database: 122,498,611
effective search space: 112086229065
effective search space used: 112086229065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)