Query 001619
Match_columns 1043
No_of_seqs 573 out of 3238
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047 mRNA splicing factor [ 100.0 1.6E-74 3.5E-79 645.7 42.3 550 13-587 3-695 (835)
2 KOG0495 HAT repeat protein [RN 100.0 9E-54 1.9E-58 479.2 43.4 454 22-554 334-827 (913)
3 KOG1258 mRNA processing protei 100.0 1.7E-45 3.7E-50 417.8 46.6 493 13-517 21-545 (577)
4 KOG1915 Cell cycle control pro 100.0 1.1E-45 2.4E-50 401.8 40.6 455 23-522 59-542 (677)
5 KOG1914 mRNA cleavage and poly 100.0 2.2E-39 4.8E-44 359.0 46.4 434 25-520 8-505 (656)
6 KOG1915 Cell cycle control pro 100.0 7E-37 1.5E-41 333.3 43.9 435 25-522 95-591 (677)
7 KOG0495 HAT repeat protein [RN 100.0 5.8E-32 1.3E-36 304.3 40.8 450 21-522 364-886 (913)
8 KOG2047 mRNA splicing factor [ 100.0 3.2E-29 7E-34 282.3 44.1 475 22-511 45-718 (835)
9 COG5107 RNA14 Pre-mRNA 3'-end 100.0 7.3E-29 1.6E-33 269.4 36.9 435 22-522 27-537 (660)
10 KOG0128 RNA-binding protein SA 99.9 4.7E-23 1E-27 239.9 40.5 431 6-516 79-563 (881)
11 KOG1070 rRNA processing protei 99.9 3.2E-21 7E-26 232.8 28.2 204 289-518 1497-1702(1710)
12 TIGR02917 PEP_TPR_lipo putativ 99.8 9E-17 1.9E-21 205.8 54.3 342 53-422 445-799 (899)
13 KOG1914 mRNA cleavage and poly 99.8 1.8E-17 3.9E-22 185.5 41.0 397 18-475 34-503 (656)
14 TIGR02917 PEP_TPR_lipo putativ 99.8 2E-16 4.4E-21 202.5 55.1 380 21-422 347-765 (899)
15 KOG4626 O-linked N-acetylgluco 99.8 3E-18 6.4E-23 193.1 31.0 391 22-522 101-491 (966)
16 KOG1258 mRNA processing protei 99.8 1.1E-16 2.5E-21 183.4 42.3 392 22-444 64-486 (577)
17 KOG1070 rRNA processing protei 99.8 1.2E-17 2.6E-22 202.4 27.7 252 92-422 1443-1700(1710)
18 KOG2396 HAT (Half-A-TPR) repea 99.8 1.1E-15 2.3E-20 170.7 38.9 96 23-120 91-187 (568)
19 TIGR00990 3a0801s09 mitochondr 99.8 3.4E-15 7.4E-20 184.6 47.2 413 43-520 133-575 (615)
20 KOG4626 O-linked N-acetylgluco 99.8 6E-17 1.3E-21 182.7 27.9 357 20-477 133-489 (966)
21 PRK11447 cellulose synthase su 99.8 3.7E-15 7.9E-20 196.3 48.1 405 53-517 283-741 (1157)
22 PRK11447 cellulose synthase su 99.8 2.5E-14 5.3E-19 188.5 50.5 418 23-521 48-529 (1157)
23 PRK10049 pgaA outer membrane p 99.7 3.5E-14 7.7E-19 179.2 49.5 426 32-522 13-462 (765)
24 PRK15174 Vi polysaccharide exp 99.7 1.3E-14 2.8E-19 179.6 42.1 314 24-422 63-381 (656)
25 PRK15174 Vi polysaccharide exp 99.7 4.5E-14 9.9E-19 174.8 43.9 325 53-477 56-385 (656)
26 TIGR00990 3a0801s09 mitochondr 99.7 2E-13 4.4E-18 168.9 48.7 407 76-522 130-543 (615)
27 PRK10049 pgaA outer membrane p 99.6 1.4E-12 3E-17 164.7 44.0 392 24-477 36-460 (765)
28 KOG2396 HAT (Half-A-TPR) repea 99.6 6E-12 1.3E-16 141.1 40.3 131 24-158 38-187 (568)
29 COG5107 RNA14 Pre-mRNA 3'-end 99.6 3.6E-13 7.7E-18 148.0 29.8 392 18-476 57-534 (660)
30 PF05843 Suf: Suppressor of fo 99.6 2.4E-15 5.2E-20 166.9 12.9 133 39-174 3-136 (280)
31 PF13429 TPR_15: Tetratricopep 99.6 7.9E-15 1.7E-19 163.4 13.8 267 74-422 9-277 (280)
32 PRK11788 tetratricopeptide rep 99.6 8E-12 1.7E-16 145.7 38.2 305 84-477 46-355 (389)
33 PRK11788 tetratricopeptide rep 99.5 1.7E-11 3.7E-16 142.9 34.9 292 53-424 49-349 (389)
34 PF05843 Suf: Suppressor of fo 99.5 3.4E-13 7.5E-18 149.7 17.4 131 291-422 3-136 (280)
35 KOG2076 RNA polymerase III tra 99.5 1.8E-10 3.9E-15 137.2 40.5 367 21-416 157-549 (895)
36 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.8E-18 152.6 12.0 269 32-386 5-276 (280)
37 KOG0547 Translocase of outer m 99.5 3.3E-10 7.1E-15 126.7 35.7 424 53-518 129-568 (606)
38 PLN03218 maturation of RBCL 1; 99.5 1.4E-09 3.1E-14 139.4 47.0 414 33-521 366-788 (1060)
39 PLN03081 pentatricopeptide (PP 99.5 2.9E-10 6.3E-15 142.9 40.3 428 37-520 87-527 (697)
40 PRK09782 bacteriophage N4 rece 99.4 7.4E-11 1.6E-15 150.1 33.7 281 56-422 458-740 (987)
41 PLN03218 maturation of RBCL 1; 99.4 4.2E-09 9.1E-14 135.1 47.9 388 25-474 392-784 (1060)
42 KOG0128 RNA-binding protein SA 99.4 3.9E-10 8.5E-15 133.2 35.2 375 56-521 96-531 (881)
43 PRK14574 hmsH outer membrane p 99.4 9.4E-09 2E-13 128.6 49.0 437 21-522 52-519 (822)
44 PRK09782 bacteriophage N4 rece 99.4 2E-09 4.4E-14 137.1 42.6 203 290-521 543-745 (987)
45 PLN03077 Protein ECB2; Provisi 99.4 1.5E-09 3.2E-14 139.8 42.2 434 36-522 221-692 (857)
46 TIGR00540 hemY_coli hemY prote 99.4 1.8E-09 3.9E-14 126.9 39.4 320 27-424 62-401 (409)
47 KOG2002 TPR-containing nuclear 99.3 1.4E-08 3E-13 122.2 42.2 355 16-437 143-534 (1018)
48 PLN03081 pentatricopeptide (PP 99.3 4.4E-09 9.5E-14 132.3 39.2 418 35-516 121-557 (697)
49 KOG1155 Anaphase-promoting com 99.3 1.4E-08 3.1E-13 113.3 37.5 334 34-423 159-496 (559)
50 KOG2076 RNA polymerase III tra 99.3 3.1E-08 6.8E-13 118.5 39.0 349 38-420 140-510 (895)
51 PLN03077 Protein ECB2; Provisi 99.3 4.5E-08 9.7E-13 126.2 43.9 419 35-517 251-721 (857)
52 PRK10747 putative protoheme IX 99.2 5.1E-08 1.1E-12 114.3 38.4 316 27-422 62-390 (398)
53 TIGR02521 type_IV_pilW type IV 99.2 5.4E-09 1.2E-13 111.0 26.3 201 72-385 30-230 (234)
54 PRK14574 hmsH outer membrane p 99.2 2.2E-07 4.8E-12 116.5 43.9 405 22-477 87-517 (822)
55 PRK12370 invasion protein regu 99.2 4.7E-09 1E-13 128.1 28.7 138 33-174 252-401 (553)
56 KOG0547 Translocase of outer m 99.2 8.7E-08 1.9E-12 107.7 34.6 170 284-472 389-565 (606)
57 PRK12370 invasion protein regu 99.2 1E-08 2.2E-13 125.2 30.2 140 284-426 367-506 (553)
58 KOG2002 TPR-containing nuclear 99.2 6.4E-07 1.4E-11 108.2 43.9 322 53-422 213-559 (1018)
59 PF08424 NRDE-2: NRDE-2, neces 99.2 8.6E-10 1.9E-14 124.9 18.5 152 22-173 4-182 (321)
60 KOG1126 DNA-binding cell divis 99.2 9.5E-09 2.1E-13 119.7 27.0 287 54-422 334-620 (638)
61 TIGR02521 type_IV_pilW type IV 99.1 2.4E-08 5.2E-13 106.0 27.0 204 288-518 30-234 (234)
62 KOG1155 Anaphase-promoting com 99.1 4.7E-08 1E-12 109.2 29.5 280 54-421 242-535 (559)
63 COG3063 PilF Tfp pilus assembl 99.1 4.3E-08 9.2E-13 101.3 23.8 196 300-522 46-242 (250)
64 PRK11189 lipoprotein NlpI; Pro 99.0 4.7E-08 1E-12 109.8 24.9 148 18-172 41-192 (296)
65 TIGR00540 hemY_coli hemY prote 99.0 3E-07 6.5E-12 108.2 31.2 279 24-386 105-398 (409)
66 PRK10747 putative protoheme IX 99.0 1.3E-06 2.8E-11 102.4 36.0 202 284-517 182-391 (398)
67 KOG1156 N-terminal acetyltrans 98.9 1.3E-05 2.8E-10 93.5 40.7 349 23-387 61-468 (700)
68 PRK11189 lipoprotein NlpI; Pro 98.9 4E-07 8.6E-12 102.3 27.3 117 56-176 43-163 (296)
69 KOG1156 N-terminal acetyltrans 98.9 2.5E-05 5.5E-10 91.2 39.9 354 25-422 29-434 (700)
70 COG3063 PilF Tfp pilus assembl 98.8 3.2E-07 6.8E-12 95.0 20.2 90 83-176 45-134 (250)
71 KOG1126 DNA-binding cell divis 98.8 1.5E-06 3.3E-11 101.7 25.6 253 53-386 367-619 (638)
72 PF12569 NARP1: NMDA receptor- 98.8 7.9E-05 1.7E-09 89.1 40.6 305 44-425 11-337 (517)
73 KOG1125 TPR repeat-containing 98.7 1.4E-06 3.1E-11 100.4 22.2 228 53-352 299-527 (579)
74 COG5191 Uncharacterized conser 98.7 5.8E-08 1.3E-12 103.3 10.0 140 24-173 38-199 (435)
75 KOG4162 Predicted calmodulin-b 98.7 0.00013 2.8E-09 87.0 38.1 136 288-425 649-786 (799)
76 KOG1173 Anaphase-promoting com 98.7 2.6E-05 5.6E-10 89.9 30.1 28 19-46 157-184 (611)
77 cd05804 StaR_like StaR_like; a 98.6 7.4E-05 1.6E-09 86.0 34.5 311 33-422 2-336 (355)
78 PRK10370 formate-dependent nit 98.6 5.2E-07 1.1E-11 95.0 15.1 116 54-173 54-172 (198)
79 KOG2003 TPR repeat-containing 98.6 6.2E-05 1.3E-09 83.9 31.3 191 302-521 503-694 (840)
80 KOG4162 Predicted calmodulin-b 98.6 0.00051 1.1E-08 82.1 40.3 136 359-519 651-786 (799)
81 KOG1127 TPR repeat-containing 98.6 0.0001 2.2E-09 89.6 34.9 388 21-422 476-913 (1238)
82 KOG1174 Anaphase-promoting com 98.6 0.00017 3.8E-09 80.1 34.0 227 285-522 228-473 (564)
83 KOG1174 Anaphase-promoting com 98.6 2.6E-05 5.5E-10 86.5 27.5 136 284-422 363-500 (564)
84 KOG1173 Anaphase-promoting com 98.6 5.6E-06 1.2E-10 95.2 22.6 133 35-173 242-374 (611)
85 KOG1840 Kinesin light chain [C 98.6 2.1E-05 4.5E-10 93.0 26.9 126 296-422 332-479 (508)
86 PRK10370 formate-dependent nit 98.6 1.4E-06 3.1E-11 91.8 15.6 119 302-422 52-173 (198)
87 PRK15179 Vi polysaccharide bio 98.6 2.6E-06 5.7E-11 105.1 20.1 148 286-441 83-230 (694)
88 COG5191 Uncharacterized conser 98.5 1.3E-07 2.7E-12 100.8 7.1 108 22-137 92-200 (435)
89 PRK15359 type III secretion sy 98.5 2.6E-06 5.6E-11 85.1 15.8 120 23-151 13-132 (144)
90 PF08424 NRDE-2: NRDE-2, neces 98.5 4.1E-06 9E-11 95.0 18.9 147 267-422 5-183 (321)
91 COG2956 Predicted N-acetylgluc 98.5 0.00039 8.5E-09 75.5 32.3 266 78-422 41-311 (389)
92 KOG0548 Molecular co-chaperone 98.5 0.00063 1.4E-08 78.5 35.4 400 19-477 18-459 (539)
93 cd05804 StaR_like StaR_like; a 98.5 0.00018 4E-09 82.7 31.9 99 286-385 111-213 (355)
94 PLN02789 farnesyltranstransfer 98.5 4.8E-05 1.1E-09 85.9 26.2 138 34-177 34-174 (320)
95 COG2956 Predicted N-acetylgluc 98.4 0.0011 2.4E-08 72.1 33.6 266 113-476 42-314 (389)
96 PRK15359 type III secretion sy 98.4 4.4E-06 9.6E-11 83.4 14.9 111 284-399 22-132 (144)
97 KOG1840 Kinesin light chain [C 98.4 3.5E-05 7.7E-10 91.1 24.6 211 290-517 242-480 (508)
98 PRK15179 Vi polysaccharide bio 98.4 1.2E-05 2.5E-10 99.5 20.7 147 25-177 74-220 (694)
99 TIGR02552 LcrH_SycD type III s 98.4 9E-06 1.9E-10 79.7 15.8 115 24-141 4-118 (135)
100 PLN02789 farnesyltranstransfer 98.3 6.8E-05 1.5E-09 84.8 23.0 177 288-477 36-216 (320)
101 KOG1129 TPR repeat-containing 98.3 5.1E-05 1.1E-09 81.9 20.3 133 34-175 178-320 (478)
102 KOG1127 TPR repeat-containing 98.3 0.0012 2.6E-08 80.7 33.7 97 285-383 813-909 (1238)
103 KOG3598 Thyroid hormone recept 98.3 1.6E-06 3.5E-11 106.5 9.2 12 800-811 1963-1974(2220)
104 KOG1125 TPR repeat-containing 98.3 4.2E-05 9E-10 88.6 20.2 227 84-386 296-526 (579)
105 PF12569 NARP1: NMDA receptor- 98.2 0.0013 2.8E-08 78.9 31.8 292 26-386 27-333 (517)
106 KOG1129 TPR repeat-containing 98.2 6E-05 1.3E-09 81.4 18.0 222 53-352 237-458 (478)
107 TIGR02552 LcrH_SycD type III s 98.2 2.3E-05 5E-10 76.8 14.0 111 310-422 4-114 (135)
108 KOG1128 Uncharacterized conser 98.2 0.00032 6.9E-09 83.3 24.7 122 302-425 498-619 (777)
109 KOG3598 Thyroid hormone recept 98.2 1.1E-06 2.4E-11 107.8 4.7 8 824-831 1990-1997(2220)
110 PRK14720 transcript cleavage f 98.2 0.00011 2.4E-09 91.7 22.0 152 284-439 26-195 (906)
111 TIGR03302 OM_YfiO outer membra 98.2 7.3E-05 1.6E-09 80.9 18.4 138 34-173 30-194 (235)
112 KOG3617 WD40 and TPR repeat-co 98.2 0.0054 1.2E-07 73.4 34.0 97 289-385 912-1049(1416)
113 KOG2376 Signal recognition par 98.2 0.026 5.6E-07 66.2 38.6 128 38-177 14-142 (652)
114 COG3071 HemY Uncharacterized e 98.1 0.022 4.8E-07 64.0 36.0 319 26-422 61-390 (400)
115 KOG3060 Uncharacterized conser 98.1 0.00077 1.7E-08 71.1 22.8 186 87-352 26-220 (289)
116 PRK14720 transcript cleavage f 98.1 0.0016 3.5E-08 81.6 29.9 123 293-422 120-252 (906)
117 KOG3060 Uncharacterized conser 98.1 0.00042 9.2E-09 73.0 20.5 160 302-477 65-224 (289)
118 PF08311 Mad3_BUB1_I: Mad3/BUB 98.1 4.4E-05 9.5E-10 74.2 12.3 109 306-420 2-126 (126)
119 TIGR03302 OM_YfiO outer membra 98.1 0.00053 1.2E-08 74.1 22.0 193 284-519 28-235 (235)
120 PF08311 Mad3_BUB1_I: Mad3/BUB 98.1 6.5E-05 1.4E-09 73.0 13.2 108 56-172 2-126 (126)
121 KOG0624 dsRNA-activated protei 98.0 0.013 2.9E-07 64.2 31.1 44 286-329 220-263 (504)
122 KOG1128 Uncharacterized conser 98.0 0.0022 4.7E-08 76.5 27.2 219 73-387 398-616 (777)
123 KOG3617 WD40 and TPR repeat-co 97.9 0.014 3E-07 70.1 31.4 21 598-618 1395-1415(1416)
124 smart00777 Mad3_BUB1_I Mad3/BU 97.9 6.5E-05 1.4E-09 72.2 10.3 106 267-383 5-124 (125)
125 COG5010 TadD Flp pilus assembl 97.9 0.00081 1.8E-08 71.5 19.2 150 308-477 52-201 (257)
126 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.5E-09 64.8 11.1 94 292-386 3-96 (100)
127 KOG2003 TPR repeat-containing 97.9 0.011 2.5E-07 66.4 28.0 133 287-422 556-689 (840)
128 PRK15363 pathogenicity island 97.9 0.0004 8.7E-09 69.2 15.1 102 286-388 32-133 (157)
129 cd00189 TPR Tetratricopeptide 97.8 0.00019 4E-09 63.4 11.1 84 53-137 14-97 (100)
130 COG4235 Cytochrome c biogenesi 97.8 0.0003 6.4E-09 76.6 14.1 116 54-173 137-255 (287)
131 PF09976 TPR_21: Tetratricopep 97.8 0.0008 1.7E-08 67.2 16.1 116 302-420 24-145 (145)
132 PLN03088 SGT1, suppressor of 97.8 0.00029 6.2E-09 81.3 14.6 90 297-387 10-99 (356)
133 KOG0548 Molecular co-chaperone 97.8 0.065 1.4E-06 62.4 33.0 88 333-422 368-455 (539)
134 PLN03088 SGT1, suppressor of 97.7 0.00062 1.3E-08 78.6 16.3 99 53-153 16-114 (356)
135 PRK15363 pathogenicity island 97.7 0.0011 2.4E-08 66.0 15.2 104 34-140 32-135 (157)
136 COG4783 Putative Zn-dependent 97.7 0.0039 8.5E-08 71.6 21.1 135 286-422 303-437 (484)
137 KOG0624 dsRNA-activated protei 97.6 0.035 7.6E-07 61.0 26.4 298 21-352 56-370 (504)
138 KOG2376 Signal recognition par 97.6 0.26 5.6E-06 58.2 37.2 118 305-422 357-487 (652)
139 PF09976 TPR_21: Tetratricopep 97.5 0.0036 7.7E-08 62.5 16.6 126 39-172 14-145 (145)
140 COG4783 Putative Zn-dependent 97.5 0.003 6.5E-08 72.5 17.5 117 53-173 320-436 (484)
141 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.2E-07 65.0 23.1 185 304-519 30-228 (282)
142 COG5010 TadD Flp pilus assembl 97.5 0.0025 5.4E-08 67.9 15.2 135 285-421 96-230 (257)
143 smart00386 HAT HAT (Half-A-TPR 97.5 0.00018 3.9E-09 51.7 4.6 31 88-118 2-32 (33)
144 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0025 5.4E-08 60.3 13.8 100 38-140 3-108 (119)
145 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0026 5.6E-08 60.3 13.6 97 291-387 4-105 (119)
146 PF14938 SNAP: Soluble NSF att 97.4 0.0095 2.1E-07 66.5 20.0 172 294-477 40-229 (282)
147 smart00777 Mad3_BUB1_I Mad3/BU 97.4 0.0018 3.9E-08 62.3 11.8 107 307-419 3-125 (125)
148 PF14559 TPR_19: Tetratricopep 97.4 0.00054 1.2E-08 58.5 7.3 63 53-115 5-67 (68)
149 PF14559 TPR_19: Tetratricopep 97.4 0.00035 7.6E-09 59.7 6.1 63 302-365 4-66 (68)
150 COG4235 Cytochrome c biogenesi 97.4 0.0033 7.1E-08 68.6 14.8 125 15-142 134-261 (287)
151 PRK10153 DNA-binding transcrip 97.4 0.0046 1E-07 74.6 17.6 141 286-434 334-488 (517)
152 PF12895 Apc3: Anaphase-promot 97.3 0.00089 1.9E-08 60.0 7.9 80 337-418 3-83 (84)
153 PF13432 TPR_16: Tetratricopep 97.3 0.00095 2.1E-08 56.5 7.6 54 53-106 11-64 (65)
154 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.6E-08 55.9 8.0 57 296-352 4-60 (65)
155 PRK02603 photosystem I assembl 97.3 0.0035 7.7E-08 64.4 12.9 85 34-120 32-119 (172)
156 PRK02603 photosystem I assembl 97.3 0.0049 1.1E-07 63.4 13.9 88 286-374 32-122 (172)
157 KOG0553 TPR repeat-containing 97.3 0.0058 1.2E-07 66.4 14.6 93 299-393 91-183 (304)
158 PF13414 TPR_11: TPR repeat; P 97.2 0.0015 3.2E-08 56.0 8.1 64 73-137 3-67 (69)
159 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0064 1.4E-07 70.4 15.1 119 294-417 174-292 (395)
160 PF12895 Apc3: Anaphase-promot 97.2 0.0023 5E-08 57.3 9.0 81 302-384 2-84 (84)
161 PF13414 TPR_11: TPR repeat; P 97.1 0.0024 5.3E-08 54.6 8.7 67 36-104 2-69 (69)
162 KOG0553 TPR repeat-containing 97.1 0.0032 6.9E-08 68.4 11.0 91 335-433 93-183 (304)
163 CHL00033 ycf3 photosystem I as 97.1 0.0099 2.1E-07 60.8 14.4 86 31-118 27-117 (168)
164 PF12688 TPR_5: Tetratrico pep 97.1 0.0094 2E-07 57.4 13.0 95 291-386 3-103 (120)
165 KOG0550 Molecular chaperone (D 97.1 0.11 2.3E-06 58.8 22.6 101 285-386 245-349 (486)
166 PRK04841 transcriptional regul 97.1 0.34 7.4E-06 63.3 31.5 128 295-423 618-761 (903)
167 PF13428 TPR_14: Tetratricopep 97.0 0.0013 2.8E-08 51.3 5.4 42 74-115 2-43 (44)
168 KOG0550 Molecular chaperone (D 97.0 0.13 2.8E-06 58.2 22.7 138 284-423 198-351 (486)
169 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.012 2.7E-07 68.1 15.6 117 44-169 176-292 (395)
170 PRK04841 transcriptional regul 97.0 2.3 5E-05 55.6 38.9 172 295-477 579-764 (903)
171 CHL00033 ycf3 photosystem I as 97.0 0.011 2.4E-07 60.5 13.2 81 287-368 33-116 (168)
172 PRK10803 tol-pal system protei 97.0 0.014 3E-07 64.2 14.8 103 36-141 141-250 (263)
173 PF02184 HAT: HAT (Half-A-TPR) 96.9 0.001 2.2E-08 47.3 3.4 28 89-117 3-30 (32)
174 smart00386 HAT HAT (Half-A-TPR 96.9 0.0017 3.6E-08 46.5 4.4 32 53-84 1-32 (33)
175 PF13371 TPR_9: Tetratricopept 96.8 0.0077 1.7E-07 52.1 8.6 57 53-109 9-65 (73)
176 PRK11906 transcriptional regul 96.7 0.012 2.7E-07 68.0 12.0 116 305-422 274-401 (458)
177 PRK10803 tol-pal system protei 96.7 0.042 9.2E-07 60.5 15.7 105 73-178 142-251 (263)
178 KOG0890 Protein kinase of the 96.7 2.9 6.3E-05 57.1 34.3 216 288-520 1628-1889(2382)
179 COG3071 HemY Uncharacterized e 96.7 1.7 3.7E-05 49.4 34.8 135 354-519 259-393 (400)
180 PF13371 TPR_9: Tetratricopept 96.6 0.0073 1.6E-07 52.2 7.5 53 300-352 6-58 (73)
181 KOG0890 Protein kinase of the 96.6 3.5 7.7E-05 56.3 34.2 237 285-538 1666-1951(2382)
182 PRK10153 DNA-binding transcrip 96.6 0.033 7.1E-07 67.3 14.9 144 28-176 328-484 (517)
183 PF13428 TPR_14: Tetratricopep 96.6 0.0041 9E-08 48.4 4.9 40 325-365 3-42 (44)
184 PF02259 FAT: FAT domain; Int 96.4 1.6 3.6E-05 49.8 27.7 119 286-405 143-304 (352)
185 PRK11906 transcriptional regul 96.4 0.071 1.5E-06 61.9 15.4 116 25-141 280-405 (458)
186 PF02184 HAT: HAT (Half-A-TPR) 96.3 0.0047 1E-07 44.0 3.4 30 54-84 2-31 (32)
187 PF02259 FAT: FAT domain; Int 96.3 0.2 4.3E-06 57.4 18.9 121 319-445 142-304 (352)
188 KOG3785 Uncharacterized conser 96.1 2.5 5.4E-05 47.2 24.4 73 345-417 380-452 (557)
189 PRK10866 outer membrane biogen 96.1 1.9 4.2E-05 47.0 24.1 69 72-143 31-104 (243)
190 PRK15331 chaperone protein Sic 96.0 0.11 2.4E-06 52.3 12.9 102 285-387 33-134 (165)
191 KOG3616 Selective LIM binding 95.8 6.6 0.00014 47.6 29.4 43 53-96 458-500 (1636)
192 KOG3616 Selective LIM binding 95.8 6.6 0.00014 47.6 33.1 29 488-516 996-1024(1636)
193 PF12688 TPR_5: Tetratrico pep 95.6 0.28 6E-06 47.2 13.2 80 53-133 15-100 (120)
194 KOG1585 Protein required for f 95.6 3.1 6.8E-05 44.4 21.5 57 300-386 82-138 (308)
195 PF04733 Coatomer_E: Coatomer 95.5 0.19 4.1E-06 56.3 13.8 199 289-519 66-268 (290)
196 PF03704 BTAD: Bacterial trans 95.4 0.43 9.4E-06 47.3 14.6 64 74-138 63-126 (146)
197 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.15 3.3E-06 59.1 12.0 69 32-102 70-141 (453)
198 PRK15331 chaperone protein Sic 95.2 0.17 3.6E-06 51.0 10.7 83 53-136 51-133 (165)
199 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.25 5.4E-06 57.4 13.5 69 284-352 70-141 (453)
200 PF13525 YfiO: Outer membrane 95.2 2.3 4.9E-05 45.0 20.2 134 293-433 9-175 (203)
201 COG1729 Uncharacterized protei 95.2 0.33 7.1E-06 52.7 13.6 94 334-433 152-249 (262)
202 COG0457 NrfG FOG: TPR repeat [ 95.2 4 8.8E-05 41.3 25.1 201 291-519 61-268 (291)
203 COG4700 Uncharacterized protei 95.2 0.82 1.8E-05 46.7 15.3 125 295-422 95-222 (251)
204 PF13525 YfiO: Outer membrane 95.2 2.1 4.7E-05 45.2 19.8 23 500-522 154-176 (203)
205 PF04184 ST7: ST7 protein; In 95.1 1.1 2.4E-05 52.4 18.0 254 302-589 181-464 (539)
206 COG3898 Uncharacterized membra 95.0 8.2 0.00018 43.9 30.6 292 53-422 98-392 (531)
207 PF13424 TPR_12: Tetratricopep 95.0 0.076 1.7E-06 46.5 6.8 64 289-352 5-75 (78)
208 PF04733 Coatomer_E: Coatomer 94.9 1.5 3.2E-05 49.2 18.5 133 288-422 130-265 (290)
209 KOG0543 FKBP-type peptidyl-pro 94.9 0.83 1.8E-05 52.1 16.1 101 360-477 259-359 (397)
210 KOG4555 TPR repeat-containing 94.9 0.39 8.5E-06 46.1 11.4 52 301-352 55-106 (175)
211 COG1729 Uncharacterized protei 94.8 0.41 8.9E-06 52.0 12.9 98 38-141 143-248 (262)
212 KOG0985 Vesicle coat protein c 94.7 17 0.00037 46.1 28.0 107 301-426 1206-1312(1666)
213 PF13424 TPR_12: Tetratricopep 94.7 0.11 2.3E-06 45.6 7.1 62 361-422 8-75 (78)
214 PF13431 TPR_17: Tetratricopep 94.7 0.03 6.4E-07 41.0 2.7 33 311-343 1-33 (34)
215 KOG3785 Uncharacterized conser 94.6 0.73 1.6E-05 51.2 14.3 134 286-422 56-214 (557)
216 PRK10866 outer membrane biogen 94.6 4.8 0.0001 43.9 21.0 129 291-422 34-204 (243)
217 KOG3081 Vesicle coat complex C 94.5 5.5 0.00012 43.2 20.1 200 288-518 71-273 (299)
218 COG4700 Uncharacterized protei 94.4 3.3 7.2E-05 42.5 17.2 136 326-476 92-229 (251)
219 PF06552 TOM20_plant: Plant sp 94.0 0.29 6.2E-06 50.0 9.0 28 124-155 96-123 (186)
220 COG0457 NrfG FOG: TPR repeat [ 93.9 8 0.00017 39.0 30.2 120 300-422 141-265 (291)
221 PF13431 TPR_17: Tetratricopep 93.7 0.094 2E-06 38.4 3.7 32 62-93 2-33 (34)
222 KOG4555 TPR repeat-containing 93.6 0.89 1.9E-05 43.8 11.0 88 334-422 54-144 (175)
223 KOG4234 TPR repeat-containing 93.5 1.2 2.5E-05 46.1 12.4 86 300-386 106-196 (271)
224 KOG4234 TPR repeat-containing 93.5 0.61 1.3E-05 48.1 10.4 87 334-422 106-197 (271)
225 KOG4642 Chaperone-dependent E3 93.5 0.7 1.5E-05 49.0 11.1 98 55-154 26-126 (284)
226 PF03704 BTAD: Bacterial trans 93.5 4.7 0.0001 39.8 16.9 107 300-426 17-129 (146)
227 PF06552 TOM20_plant: Plant sp 93.3 0.6 1.3E-05 47.7 9.9 82 55-136 7-101 (186)
228 KOG2053 Mitochondrial inherita 93.3 26 0.00055 44.1 25.2 56 367-422 199-255 (932)
229 KOG1972 Uncharacterized conser 93.2 15 0.00032 45.6 22.6 135 284-422 717-865 (913)
230 KOG0543 FKBP-type peptidyl-pro 92.9 0.8 1.7E-05 52.2 11.2 94 78-175 262-356 (397)
231 PF13512 TPR_18: Tetratricopep 92.2 3.7 7.9E-05 40.6 13.4 62 359-422 11-76 (142)
232 KOG0889 Histone acetyltransfer 92.1 81 0.0018 45.8 32.6 72 30-102 2421-2511(3550)
233 KOG1586 Protein required for f 91.5 22 0.00048 38.0 20.3 121 302-422 86-224 (288)
234 COG4785 NlpI Lipoprotein NlpI, 91.3 22 0.00047 37.6 19.9 173 284-474 94-267 (297)
235 COG4785 NlpI Lipoprotein NlpI, 91.3 13 0.00028 39.2 16.7 194 291-515 67-265 (297)
236 PF13512 TPR_18: Tetratricopep 91.2 5.9 0.00013 39.2 13.7 54 53-108 24-82 (142)
237 PF10602 RPN7: 26S proteasome 91.1 7 0.00015 40.4 15.0 64 289-352 36-102 (177)
238 KOG4648 Uncharacterized conser 91.0 1.1 2.5E-05 49.5 9.3 51 293-343 101-151 (536)
239 PF15297 CKAP2_C: Cytoskeleton 90.6 1 2.2E-05 50.6 8.8 85 323-422 83-169 (353)
240 KOG1308 Hsp70-interacting prot 90.6 0.21 4.6E-06 55.4 3.4 120 301-423 126-245 (377)
241 PF07719 TPR_2: Tetratricopept 90.1 0.78 1.7E-05 32.8 5.1 32 74-105 2-33 (34)
242 KOG1585 Protein required for f 89.9 32 0.00069 37.1 20.3 89 53-174 45-139 (308)
243 KOG4648 Uncharacterized conser 89.9 2.1 4.5E-05 47.6 10.1 103 332-442 106-208 (536)
244 PF11498 Activator_LAG-3: Tran 89.5 0.11 2.3E-06 56.9 0.0 10 739-748 268-277 (468)
245 KOG1586 Protein required for f 89.0 36 0.00077 36.5 19.9 117 291-422 56-183 (288)
246 PF09986 DUF2225: Uncharacteri 88.8 5.7 0.00012 42.4 12.5 93 303-423 91-195 (214)
247 PF10300 DUF3808: Protein of u 88.7 5.5 0.00012 47.9 13.8 122 302-423 246-377 (468)
248 COG1747 Uncharacterized N-term 88.4 46 0.001 39.4 19.8 130 291-422 101-234 (711)
249 KOG3824 Huntingtin interacting 88.4 11 0.00024 41.6 14.1 60 455-518 245-312 (472)
250 KOG4642 Chaperone-dependent E3 88.0 4.8 0.0001 43.0 10.8 96 19-116 26-126 (284)
251 PF03154 Atrophin-1: Atrophin- 87.2 42 0.00092 42.7 19.9 96 595-697 34-136 (982)
252 PF07719 TPR_2: Tetratricopept 86.8 1.5 3.4E-05 31.2 4.8 29 324-352 2-30 (34)
253 PF04184 ST7: ST7 protein; In 86.8 19 0.00041 42.6 15.7 137 284-422 197-375 (539)
254 KOG1920 IkappaB kinase complex 85.3 1.4E+02 0.0029 39.3 26.6 34 124-159 889-922 (1265)
255 PF00515 TPR_1: Tetratricopept 85.3 2.2 4.7E-05 30.6 5.0 32 74-105 2-33 (34)
256 KOG1920 IkappaB kinase complex 85.0 1.4E+02 0.003 39.2 27.4 59 291-352 910-968 (1265)
257 PF15297 CKAP2_C: Cytoskeleton 84.8 4.2 9E-05 45.8 9.0 86 74-174 84-169 (353)
258 KOG1166 Mitotic checkpoint ser 84.7 3.6 7.7E-05 52.9 9.5 116 288-407 33-163 (974)
259 PF13281 DUF4071: Domain of un 84.7 85 0.0018 36.4 24.1 176 291-477 143-338 (374)
260 PF09770 PAT1: Topoisomerase I 84.5 0.3 6.5E-06 62.8 0.0 13 732-744 63-75 (808)
261 PF13181 TPR_8: Tetratricopept 84.2 2.3 5E-05 30.4 4.7 32 74-105 2-33 (34)
262 COG3898 Uncharacterized membra 84.1 87 0.0019 36.1 29.4 198 291-519 190-395 (531)
263 KOG3824 Huntingtin interacting 83.9 2 4.4E-05 47.0 5.8 56 84-140 127-182 (472)
264 PF10602 RPN7: 26S proteasome 83.7 21 0.00045 36.9 13.2 65 74-139 37-104 (177)
265 PF10300 DUF3808: Protein of u 83.5 50 0.0011 39.7 18.3 119 302-422 201-334 (468)
266 COG3118 Thioredoxin domain-con 83.5 69 0.0015 35.6 17.3 84 331-415 142-225 (304)
267 KOG1538 Uncharacterized conser 83.2 21 0.00046 43.0 14.1 30 356-385 802-831 (1081)
268 KOG3081 Vesicle coat complex C 83.1 25 0.00054 38.4 13.5 50 88-138 188-237 (299)
269 PF04910 Tcf25: Transcriptiona 82.4 45 0.00098 38.6 16.7 123 303-439 24-147 (360)
270 KOG2041 WD40 repeat protein [G 81.7 1.4E+02 0.0031 36.8 31.1 15 288-302 890-904 (1189)
271 COG3629 DnrI DNA-binding trans 81.4 20 0.00044 39.7 12.6 61 75-136 155-215 (280)
272 KOG2041 WD40 repeat protein [G 80.9 1.5E+02 0.0033 36.6 27.0 41 132-173 680-720 (1189)
273 PF13181 TPR_8: Tetratricopept 80.7 3.8 8.1E-05 29.3 4.6 29 324-352 2-30 (34)
274 KOG0530 Protein farnesyltransf 80.5 95 0.0021 34.0 17.9 102 284-386 72-175 (318)
275 KOG1166 Mitotic checkpoint ser 80.2 15 0.00033 47.4 12.6 122 285-422 11-143 (974)
276 KOG2610 Uncharacterized conser 80.2 34 0.00073 38.4 13.5 138 285-423 133-277 (491)
277 KOG2053 Mitochondrial inherita 78.4 2E+02 0.0044 36.6 39.4 114 53-169 23-138 (932)
278 PF00515 TPR_1: Tetratricopept 77.5 4.5 9.9E-05 28.9 4.2 29 324-352 2-30 (34)
279 KOG0687 26S proteasome regulat 77.3 21 0.00046 39.8 10.9 117 305-423 84-211 (393)
280 PF13174 TPR_6: Tetratricopept 77.2 4.7 0.0001 28.3 4.2 21 85-105 12-32 (33)
281 PF13176 TPR_7: Tetratricopept 77.0 4.5 9.7E-05 29.7 4.1 27 76-102 2-28 (36)
282 PF09986 DUF2225: Uncharacteri 76.9 17 0.00038 38.7 10.2 49 339-387 141-194 (214)
283 PF13174 TPR_6: Tetratricopept 76.3 6.1 0.00013 27.7 4.6 31 40-72 3-33 (33)
284 PF08631 SPO22: Meiosis protei 75.8 1E+02 0.0022 34.3 16.4 58 455-521 98-155 (278)
285 PF13281 DUF4071: Domain of un 75.8 96 0.0021 36.0 16.3 179 324-521 142-339 (374)
286 KOG1941 Acetylcholine receptor 75.7 1.3E+02 0.0029 34.3 16.5 119 304-422 137-275 (518)
287 KOG1538 Uncharacterized conser 75.2 1.4E+02 0.0031 36.5 17.4 53 365-422 780-833 (1081)
288 KOG4340 Uncharacterized conser 74.6 1.5E+02 0.0032 33.1 26.0 144 21-175 28-174 (459)
289 KOG2796 Uncharacterized conser 74.2 1.4E+02 0.0031 32.7 20.5 136 286-422 166-315 (366)
290 COG3629 DnrI DNA-binding trans 74.2 26 0.00057 38.8 10.8 50 53-102 167-216 (280)
291 PF13176 TPR_7: Tetratricopept 73.6 6.4 0.00014 28.9 4.2 27 326-352 2-28 (36)
292 PF12144 Med12-PQL: Eukaryotic 72.8 4.1 8.8E-05 41.7 3.8 67 800-866 109-177 (204)
293 COG4105 ComL DNA uptake lipopr 71.9 1.6E+02 0.0034 32.2 22.3 80 71-155 32-116 (254)
294 PF14561 TPR_20: Tetratricopep 71.3 29 0.00063 31.6 8.8 49 21-71 6-54 (90)
295 KOG1308 Hsp70-interacting prot 71.2 8.3 0.00018 43.3 6.1 81 53-136 128-210 (377)
296 PF09670 Cas_Cas02710: CRISPR- 70.0 95 0.0021 36.2 15.0 131 290-423 133-271 (379)
297 PRK12798 chemotaxis protein; R 69.7 2.3E+02 0.005 33.2 21.9 196 296-520 88-290 (421)
298 KOG4340 Uncharacterized conser 69.5 1.9E+02 0.0041 32.2 17.0 113 302-422 57-173 (459)
299 PF09613 HrpB1_HrpK: Bacterial 69.0 59 0.0013 32.9 11.1 51 335-386 22-72 (160)
300 KOG1972 Uncharacterized conser 68.6 34 0.00074 42.6 10.9 49 127-175 816-866 (913)
301 KOG2610 Uncharacterized conser 68.4 1.2E+02 0.0026 34.3 14.0 158 302-473 116-276 (491)
302 TIGR02996 rpt_mate_G_obs repea 68.0 9.8 0.00021 29.2 4.0 32 311-342 4-35 (42)
303 TIGR03362 VI_chp_7 type VI sec 68.0 2E+02 0.0043 32.5 16.3 131 291-423 102-280 (301)
304 smart00028 TPR Tetratricopepti 67.9 9 0.0002 25.4 3.8 30 75-104 3-32 (34)
305 KOG0529 Protein geranylgeranyl 66.8 63 0.0014 37.5 11.9 132 18-150 90-234 (421)
306 COG1747 Uncharacterized N-term 66.2 2.7E+02 0.0058 33.5 16.8 91 87-182 145-242 (711)
307 COG3118 Thioredoxin domain-con 66.0 60 0.0013 36.1 11.2 116 302-422 147-265 (304)
308 COG3947 Response regulator con 65.3 84 0.0018 34.9 11.9 86 34-120 224-326 (361)
309 KOG4318 Bicoid mRNA stability 64.2 1.8E+02 0.0039 37.1 15.8 88 296-385 714-806 (1088)
310 KOG0551 Hsp90 co-chaperone CNS 63.4 1.3E+02 0.0028 34.1 13.1 89 333-422 91-182 (390)
311 COG4976 Predicted methyltransf 63.2 8.5 0.00018 40.9 4.0 52 301-352 7-58 (287)
312 COG2976 Uncharacterized protei 62.5 2.1E+02 0.0045 30.1 17.9 95 326-422 92-188 (207)
313 PF12862 Apc5: Anaphase-promot 62.4 51 0.0011 30.0 8.7 30 396-425 44-73 (94)
314 COG4976 Predicted methyltransf 61.7 9.1 0.0002 40.7 3.9 57 330-387 2-58 (287)
315 PF12862 Apc5: Anaphase-promot 61.6 43 0.00094 30.5 8.0 53 334-386 9-69 (94)
316 PF14929 TAF1_subA: TAF RNA Po 60.5 79 0.0017 38.6 12.1 80 53-136 358-440 (547)
317 KOG2422 Uncharacterized conser 59.3 4.1E+02 0.0088 32.5 18.8 107 304-422 253-371 (665)
318 KOG0376 Serine-threonine phosp 59.2 14 0.0003 43.4 5.2 84 302-386 17-100 (476)
319 KOG0376 Serine-threonine phosp 58.0 14 0.00031 43.3 5.0 86 335-422 16-101 (476)
320 KOG2690 Uncharacterized conser 55.3 28 0.00061 38.6 6.4 68 284-351 162-237 (331)
321 KOG2066 Vacuolar assembly/sort 55.2 5.4E+02 0.012 32.6 24.1 54 445-516 623-676 (846)
322 COG4105 ComL DNA uptake lipopr 55.2 3.2E+02 0.0069 29.9 20.2 133 289-422 34-196 (254)
323 KOG4369 RTK signaling protein 54.8 7.9 0.00017 49.2 2.4 14 408-421 904-917 (2131)
324 PF04910 Tcf25: Transcriptiona 54.6 1E+02 0.0023 35.7 11.4 40 25-66 28-67 (360)
325 smart00299 CLH Clathrin heavy 54.6 69 0.0015 31.2 8.8 13 144-156 124-136 (140)
326 TIGR02561 HrpB1_HrpK type III 54.2 1.2E+02 0.0025 30.5 9.9 51 336-387 23-73 (153)
327 KOG1941 Acetylcholine receptor 54.0 4E+02 0.0086 30.7 16.9 90 333-422 132-235 (518)
328 smart00028 TPR Tetratricopepti 52.4 20 0.00042 23.6 3.3 27 325-351 3-29 (34)
329 PF00244 14-3-3: 14-3-3 protei 51.3 3.5E+02 0.0076 29.3 15.2 47 306-352 150-198 (236)
330 TIGR02996 rpt_mate_G_obs repea 51.1 33 0.00073 26.4 4.3 28 62-89 5-32 (42)
331 KOG0686 COP9 signalosome, subu 50.2 1.4E+02 0.0031 34.6 11.1 63 108-175 155-217 (466)
332 PF14561 TPR_20: Tetratricopep 48.8 1.7E+02 0.0036 26.6 9.5 65 60-140 9-73 (90)
333 KOG4369 RTK signaling protein 48.0 19 0.00042 46.0 4.2 8 763-770 1505-1512(2131)
334 PRK10941 hypothetical protein; 46.9 91 0.002 34.5 9.0 59 84-143 192-250 (269)
335 KOG0545 Aryl-hydrocarbon recep 45.3 4.3E+02 0.0093 28.9 12.9 62 360-422 232-293 (329)
336 KOG0545 Aryl-hydrocarbon recep 44.9 3.4E+02 0.0074 29.6 12.1 95 296-392 185-297 (329)
337 PF10952 DUF2753: Protein of u 43.0 1.8E+02 0.004 28.1 8.8 59 301-359 13-89 (140)
338 KOG0529 Protein geranylgeranyl 42.6 1.7E+02 0.0037 34.1 10.3 92 28-120 54-157 (421)
339 PF04053 Coatomer_WDAD: Coatom 42.2 4.5E+02 0.0098 31.4 14.4 114 291-419 297-428 (443)
340 KOG2471 TPR repeat-containing 41.6 80 0.0017 37.3 7.5 45 391-441 333-377 (696)
341 KOG3521 Predicted guanine nucl 40.3 5.9E+02 0.013 31.6 14.4 53 61-116 191-245 (846)
342 KOG1811 Predicted Zn2+-binding 39.7 3.5E+02 0.0076 32.9 12.3 62 359-420 588-651 (1141)
343 PRK15338 type III secretion sy 39.1 1.6E+02 0.0034 34.0 9.3 82 91-174 107-196 (372)
344 COG2976 Uncharacterized protei 39.1 4.9E+02 0.011 27.5 13.4 141 303-476 48-191 (207)
345 PF13374 TPR_10: Tetratricopep 38.9 68 0.0015 23.4 4.7 28 325-352 4-31 (42)
346 KOG4507 Uncharacterized conser 38.8 7.8E+02 0.017 30.2 14.9 82 305-387 195-278 (886)
347 COG3947 Response regulator con 37.9 1.1E+02 0.0024 34.0 7.5 65 365-430 286-350 (361)
348 smart00299 CLH Clathrin heavy 37.7 3.1E+02 0.0067 26.5 10.5 34 53-86 21-54 (140)
349 TIGR03504 FimV_Cterm FimV C-te 37.6 52 0.0011 25.7 3.7 23 328-350 4-26 (44)
350 PF07721 TPR_4: Tetratricopept 37.5 54 0.0012 22.1 3.4 18 364-381 7-24 (26)
351 PRK10941 hypothetical protein; 37.5 1.9E+02 0.0041 32.1 9.6 54 53-106 195-248 (269)
352 PF11207 DUF2989: Protein of u 37.5 1.9E+02 0.004 30.6 8.9 57 320-377 138-197 (203)
353 KOG0530 Protein farnesyltransf 37.3 6.1E+02 0.013 28.1 12.9 119 302-422 56-176 (318)
354 PF09670 Cas_Cas02710: CRISPR- 36.5 3.5E+02 0.0076 31.6 12.2 68 32-102 124-198 (379)
355 KOG2796 Uncharacterized conser 36.4 6.3E+02 0.014 27.9 17.5 95 328-422 182-281 (366)
356 KOG0985 Vesicle coat protein c 36.1 1.2E+03 0.025 30.9 40.1 23 286-308 1351-1373(1666)
357 PF11207 DUF2989: Protein of u 35.6 1.7E+02 0.0037 30.9 8.3 81 332-413 115-198 (203)
358 KOG3807 Predicted membrane pro 35.3 7.2E+02 0.016 28.3 18.9 30 393-422 273-304 (556)
359 PF08631 SPO22: Meiosis protei 35.2 6.5E+02 0.014 27.8 24.2 176 327-515 88-274 (278)
360 PF07079 DUF1347: Protein of u 33.8 8.9E+02 0.019 28.9 15.9 71 354-424 75-159 (549)
361 KOG1130 Predicted G-alpha GTPa 33.5 8.5E+02 0.018 28.6 18.6 21 404-424 246-266 (639)
362 PF00244 14-3-3: 14-3-3 protei 33.5 6.5E+02 0.014 27.2 15.5 58 408-472 141-201 (236)
363 KOG2034 Vacuolar sorting prote 33.1 6.7E+02 0.015 32.3 14.0 171 324-512 363-555 (911)
364 PF04053 Coatomer_WDAD: Coatom 32.9 9.2E+02 0.02 28.8 17.8 100 302-421 274-375 (443)
365 COG5187 RPN7 26S proteasome re 32.2 7.6E+02 0.016 27.6 14.9 67 69-136 69-147 (412)
366 cd02684 MIT_2 MIT: domain cont 32.2 1.6E+02 0.0035 25.8 6.4 15 122-136 20-34 (75)
367 PF04781 DUF627: Protein of un 31.2 4.7E+02 0.01 24.9 10.1 25 302-326 9-33 (111)
368 PF04781 DUF627: Protein of un 30.6 4.3E+02 0.0094 25.2 9.3 24 53-76 10-33 (111)
369 KOG0889 Histone acetyltransfer 30.3 2.2E+03 0.049 32.5 25.0 126 291-422 2814-2954(3550)
370 PF13374 TPR_10: Tetratricopep 30.0 1.2E+02 0.0026 22.0 4.8 29 396-424 5-33 (42)
371 PF09205 DUF1955: Domain of un 29.5 2.7E+02 0.0059 27.5 7.8 57 296-352 93-149 (161)
372 KOG1112 Ribonucleotide reducta 29.1 1.2E+02 0.0026 35.8 6.3 50 448-499 312-377 (796)
373 KOG3807 Predicted membrane pro 28.8 9.1E+02 0.02 27.5 13.1 41 60-102 205-245 (556)
374 cd02684 MIT_2 MIT: domain cont 28.2 2E+02 0.0043 25.2 6.3 15 371-385 19-33 (75)
375 TIGR02710 CRISPR-associated pr 27.8 1E+03 0.022 27.8 14.1 126 291-423 133-276 (380)
376 PRK15490 Vi polysaccharide bio 27.8 7E+02 0.015 30.8 12.8 55 326-383 45-99 (578)
377 cd02680 MIT_calpain7_2 MIT: do 27.6 1.2E+02 0.0026 26.7 4.7 35 374-424 3-37 (75)
378 KOG0551 Hsp90 co-chaperone CNS 27.4 3.7E+02 0.0081 30.6 9.5 95 290-385 82-180 (390)
379 KOG1464 COP9 signalosome, subu 27.4 8.8E+02 0.019 26.8 13.8 136 290-425 66-223 (440)
380 KOG4422 Uncharacterized conser 27.1 6.4E+02 0.014 29.8 11.5 115 311-433 198-313 (625)
381 KOG2471 TPR repeat-containing 27.1 1E+02 0.0023 36.4 5.4 48 72-119 334-381 (696)
382 PF09205 DUF1955: Domain of un 25.8 6.6E+02 0.014 25.0 9.7 81 302-387 69-149 (161)
383 KOG3783 Uncharacterized conser 25.8 1.3E+03 0.028 28.2 20.5 55 332-386 458-519 (546)
384 KOG4786 Ubinuclein, nuclear pr 25.2 1.9E+02 0.0041 35.6 7.2 11 428-438 559-569 (1136)
385 PF09613 HrpB1_HrpK: Bacterial 25.1 7.4E+02 0.016 25.2 14.2 98 53-173 24-121 (160)
386 KOG4507 Uncharacterized conser 25.1 1.6E+02 0.0034 35.8 6.5 93 327-422 610-705 (886)
387 PF11846 DUF3366: Domain of un 24.7 2.1E+02 0.0045 29.7 7.0 49 55-104 127-175 (193)
388 KOG1464 COP9 signalosome, subu 24.5 8.2E+02 0.018 27.1 11.1 94 53-148 41-144 (440)
389 PF10579 Rapsyn_N: Rapsyn N-te 23.9 4.6E+02 0.01 23.4 7.6 49 88-137 21-69 (80)
390 KOG2758 Translation initiation 23.9 1.1E+03 0.024 26.8 15.2 67 319-386 125-195 (432)
391 PRK15338 type III secretion sy 23.1 1.1E+03 0.024 27.3 12.6 45 58-102 108-152 (372)
392 KOG1130 Predicted G-alpha GTPa 22.6 1.3E+03 0.028 27.2 17.2 51 53-106 31-81 (639)
393 PF04212 MIT: MIT (microtubule 22.5 1.7E+02 0.0037 24.8 4.9 16 370-385 17-32 (69)
394 PF15080 DUF4547: Domain of un 22.5 7.8E+02 0.017 24.9 9.7 93 64-160 30-130 (196)
395 KOG2422 Uncharacterized conser 22.5 1.5E+03 0.033 27.9 15.8 35 30-66 277-311 (665)
396 PF11817 Foie-gras_1: Foie gra 22.1 6.2E+02 0.013 27.5 10.3 48 306-353 155-208 (247)
397 PF12854 PPR_1: PPR repeat 21.6 1.9E+02 0.0042 20.8 4.2 22 326-347 10-31 (34)
398 PF01535 PPR: PPR repeat; Int 21.0 1.3E+02 0.0029 20.2 3.3 26 396-421 3-28 (31)
399 PF11846 DUF3366: Domain of un 21.0 5.3E+02 0.011 26.7 9.2 55 455-519 122-176 (193)
400 PF12854 PPR_1: PPR repeat 20.9 1.8E+02 0.0039 21.0 4.0 26 73-98 7-32 (34)
401 KOG2908 26S proteasome regulat 20.5 1.3E+03 0.029 26.4 16.3 90 324-413 76-177 (380)
402 cd02680 MIT_calpain7_2 MIT: do 20.1 1.5E+02 0.0033 26.1 3.9 36 460-519 3-38 (75)
No 1
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.6e-74 Score=645.66 Aligned_cols=550 Identities=17% Similarity=0.261 Sum_probs=451.4
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Q 001619 13 AEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL------ 86 (1043)
Q Consensus 13 ~~~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~------ 86 (1043)
++.|..++.++.+||+.|.+||+++++|.+||++... .+.++++.+|||||+.+|.|+++|+.|++.....
T Consensus 3 ~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~ 79 (835)
T KOG2047|consen 3 ENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCP 79 (835)
T ss_pred CCccccccccccchHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCC
Confidence 4567778888999999999999999999999998766 5888999999999999999999999999776543
Q ss_pred --CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhH
Q 001619 87 --CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSL 164 (1043)
Q Consensus 87 --~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a 164 (1043)
.-++.+..+|||||.+++++++||+.|+.|++++ ++++.+|++|+|||+++|.+. +.+||..|++|.++++-.+.+
T Consensus 80 T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 80 TDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHH
Confidence 1378999999999999999999999999999999 999999999999999999988 689999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh-------hh-----hhhhhh-HHHH------------------HHhhh
Q 001619 165 AQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE-------LE-----CESDSA-MEFQ------------------SELVL 213 (1043)
Q Consensus 165 ~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~-------l~-----~~~~~~-~~~~------------------~e~i~ 213 (1043)
.++|+|+|++.+...+.+.+ |....+.++++ ++ ++.+++ ...| .+.|+
T Consensus 158 ~rvyrRYLk~~P~~~eeyie-~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 158 IRVYRRYLKVAPEAREEYIE-YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHHHHhcCHHHHHHHHH-HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 99999999987665444433 22222222221 11 111111 1111 22355
Q ss_pred ccccccCccc--hhhhHHHHhhcCCchhhHHHHHHHHHH-----HHH--HHHHHH-------------------------
Q 001619 214 EGEVPAYYKD--DETSSVIKDLLDPSVDLVRSKAIQKYR-----FIG--EQIYKE------------------------- 259 (1043)
Q Consensus 214 ~~~l~~~~~~--~e~~~~i~~~~~~~~~~e~ar~i~~~~-----~~~--~~~y~~------------------------- 259 (1043)
++.+. .++| ..+|+.+++|+.+.|.+++||++|+.. +++ ..+|+.
T Consensus 237 R~gi~-rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 237 RGGIR-RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred Hhhcc-cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 55554 3444 367999999999999999999999852 122 122220
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCCC---CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCcHHHHHHH
Q 001619 260 ASQLDEKINCFENLIRRPY-FHVKP---LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP------CADYPEFWMRY 329 (1043)
Q Consensus 260 a~~~~~~~~~fE~~i~r~~-~~~~~---~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~------~~~~~~LWl~y 329 (1043)
..++...+..||.+|.+.. +.+.+ +||++++.|++++.+. .|+..+.+.+|.+||.. .++...||..|
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 0122345678898886543 33332 7999999999999998 68899999999999963 57889999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC-----------------
Q 001619 330 VDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD----------------- 389 (1043)
Q Consensus 330 Ak~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~----------------- 389 (1043)
|+|||.+|+++.||.+|++|+++..+ +++.+||.||++|.++.++++|++++++|+..+.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 99999999999999999999997544 4578999999999999999999999999986431
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH--------------------------
Q 001619 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT-------------------------- 443 (1043)
Q Consensus 390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~-------------------------- 443 (1043)
.+++++|.+|+++|+.+|.++++|++|++.|++++++ |.+.++||.|+
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 4678999999999999999999999999999998876 55555554331
Q ss_pred --H-HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619 444 --Y-TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 444 --~-~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~ 520 (1043)
| +++.+|..++|+.+ +||||+|||+||+.||. ++.++|+.+|..||+++|.+++++.+|+||+.+++..
T Consensus 548 diW~tYLtkfi~rygg~k-lEraRdLFEqaL~~Cpp-------~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTK-LERARDLFEQALDGCPP-------EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred HHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 1 45567888899987 99999999999999885 5889999999999999999999999999999999999
Q ss_pred ccccccCccchhhhHHHh----hhhhhhhhhhcCC-cccccccccccccccccCC------CCCcCCCccCCCCCCCC
Q 001619 521 VRTAYECPGRETKSLRAF----IRGKRESNVASLP-QPFESEHLMPSASQDKKFS------PPEKSDSESGDDATSLP 587 (1043)
Q Consensus 521 ~~~~~~~~~~k~~s~~~~----~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~ 587 (1043)
.+..+++. +++|+++.+ .|..++++|..|| ..+++|||||+++|+ +|| +||+||||+||||++-.
T Consensus 620 ~~l~myni-~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt-klGEidRARaIya~~sq~~dPr~~~~ 695 (835)
T KOG2047|consen 620 QRLDMYNI-YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET-KLGEIDRARAIYAHGSQICDPRVTTE 695 (835)
T ss_pred HHHHHHHH-HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhhhhcCCCcCChH
Confidence 99777774 666767777 4666799999999 999999998888887 699 49999999999999943
No 2
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=9e-54 Score=479.19 Aligned_cols=454 Identities=16% Similarity=0.227 Sum_probs=378.5
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~ 101 (1043)
--.....+|+.+|.++.+|+++++ ++ .+....++|+++||+.+|.|++||+..+++|. .+.||.+++||++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~d-LE----~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~----~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAAD-LE----SDTKNKKRVLRKALEHIPRSVRLWKAAVELEE----PEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHh-hh----hHHHHHHHHHHHHHHhCCchHHHHHHHHhccC----hHHHHHHHHHHHH
Confidence 345678899999999999999999 67 47888899999999999999999999999984 4679999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-CCCccHH
Q 001619 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR-FPSKKLH 180 (1043)
Q Consensus 102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~-~p~~~l~ 180 (1043)
+||.|++||++|+++ .+++.|++|+++|.+.+|+ ++.||+..+++|+..|+.+.+.+|+.|+|. +-.....
T Consensus 405 ccp~s~dLwlAlarL-----etYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 405 CCPQSMDLWLALARL-----ETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred hccchHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 999999999999999 6889999999999999999 568999999999999999999999999974 2222211
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCC------chhhHHHHHHHHHHHHHH
Q 001619 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDP------SVDLVRSKAIQKYRFIGE 254 (1043)
Q Consensus 181 ~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~------~~~~e~ar~i~~~~~~~~ 254 (1043)
. ....|+.. +.+|+..+++ ..+..|+...++.+..++|... .|.++ .+.++.+|+||.
T Consensus 477 i---~rdqWl~e---Ae~~e~agsv-~TcQAIi~avigigvEeed~~~---tw~~da~~~~k~~~~~carAVya------ 540 (913)
T KOG0495|consen 477 I---NRDQWLKE---AEACEDAGSV-ITCQAIIRAVIGIGVEEEDRKS---TWLDDAQSCEKRPAIECARAVYA------ 540 (913)
T ss_pred e---cHHHHHHH---HHHHhhcCCh-hhHHHHHHHHHhhccccchhHh---HHhhhHHHHHhcchHHHHHHHHH------
Confidence 1 12233332 3334333222 3344555555555555554432 23332 233444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619 255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1043)
Q Consensus 255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e 334 (1043)
.+|. .+|.+..+|...+.|++.+|+.+++..+|++||..||+.+.||++||+.+|
T Consensus 541 -----------------~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 541 -----------------HALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred -----------------HHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 3333 678899999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~ 414 (1043)
..||+..||.++..|+.. .+++.+||++.+++|.++..+++||.+|.+|... ....++|++++.||+.+|++++|+.
T Consensus 596 ~agdv~~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 999999999999999987 8889999999999999999999999999999853 3358999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccHHHHHHH------------HHHHH--------------HHHHHHHHHhCCCchHHHHHHHHH
Q 001619 415 TYKEALETAAEQRKFHTLPLLYVQF------------SRLTY--------------TELIKFTMVHGGRSHISIVDAVIS 468 (1043)
Q Consensus 415 lyekale~~~~~~~~p~~~~l~~~~------------ar~~~--------------~~~~~fe~~~g~~~~leraR~l~e 468 (1043)
+++++|+. ||.++++|++. ||..| +.++++|++.|. +-|||++|+
T Consensus 673 llEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ild 743 (913)
T KOG0495|consen 673 LLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILD 743 (913)
T ss_pred HHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHH
Confidence 99999998 89999999997 44444 677889999886 568999999
Q ss_pred HHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc------ccccCccchhhhHHHhhhhh
Q 001619 469 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR------TAYECPGRETKSLRAFIRGK 542 (1043)
Q Consensus 469 rAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~------~~~~~~~~k~~s~~~~~~~~ 542 (1043)
+++.+||++ ..+|..-+.+|.+.|+.+.|..++.||++.||.+|. .+++++.||+||.|||++|.
T Consensus 744 rarlkNPk~---------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 744 RARLKNPKN---------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred HHHhcCCCc---------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 999999998 456777777777899999999999999999999998 58899999999999999999
Q ss_pred hhh-hhhcCCccc
Q 001619 543 RES-NVASLPQPF 554 (1043)
Q Consensus 543 ~~~-~i~~~~~~~ 554 (1043)
+++ ++.++++.|
T Consensus 815 ~dphVllaia~lf 827 (913)
T KOG0495|consen 815 HDPHVLLAIAKLF 827 (913)
T ss_pred CCchhHHHHHHHH
Confidence 877 777777444
No 3
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=1.7e-45 Score=417.78 Aligned_cols=493 Identities=37% Similarity=0.643 Sum_probs=403.7
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001619 13 AEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKV 92 (1043)
Q Consensus 13 ~~~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a 92 (1043)
..+.+.--.+.+.+.+.+..+--++++|..+|...... .+++.+|.+|..+|..+|+++++|++|+.+|.+.|+.+++
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s 98 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENS 98 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHH
Confidence 33444445577889999999999999998888865554 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619 93 VEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1043)
Q Consensus 93 ~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL 172 (1043)
.+||||+|..+|.|++||+.|+.|+....++.+.+|++|++|+..+|.+|.|+++|..|++||...+++..+..||+|.|
T Consensus 99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 99 VKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999887899999999999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccc-ccCccchhhhHHHHhhcCCchhhHHHHH-HHHHH
Q 001619 173 RFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEV-PAYYKDDETSSVIKDLLDPSVDLVRSKA-IQKYR 250 (1043)
Q Consensus 173 ~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l-~~~~~~~e~~~~i~~~~~~~~~~e~ar~-i~~~~ 250 (1043)
.+|+..+..++..|..+++.....+....+...........+..+ ......++....+.+..+.++..+.++. +.++.
T Consensus 179 eiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~ 258 (577)
T KOG1258|consen 179 EIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV 258 (577)
T ss_pred hhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence 999999999999999998875443322221111111111110000 0112233444456666677777776663 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHH
Q 001619 251 FIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYV 330 (1043)
Q Consensus 251 ~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yA 330 (1043)
.++..+|........+++.||..|+|+|+|+.++++.+...|..|++|+.+.|+++++..+|+||+.+|..+.++|++|+
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA 338 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH
Q 001619 331 DFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV 410 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e 410 (1043)
+|++..|+.+.|..++.+|++++.+..|.|.+.||.|++..||++.|+.+|.+..... |..+.+-++++.+|++.|+.+
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999876 888999999999999999999
Q ss_pred HHHH---HHHHHHHHHHhhccCCccHHHHHHHHHHHH---------------------------HHHHHHHHHhCCCchH
Q 001619 411 AACD---TYKEALETAAEQRKFHTLPLLYVQFSRLTY---------------------------TELIKFTMVHGGRSHI 460 (1043)
Q Consensus 411 ~Ar~---lyekale~~~~~~~~p~~~~l~~~~ar~~~---------------------------~~~~~fe~~~g~~~~l 460 (1043)
.+.. +|...++- +.....+.+++++|+|+.| ..+++|+...+.....
T Consensus 418 ~~~~~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~ 494 (577)
T KOG1258|consen 418 DANYKNELYSSIYEG---KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREY 494 (577)
T ss_pred hhhHHHHHHHHhccc---ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhh
Confidence 9994 43333332 2223335789999988766 4567777777654445
Q ss_pred HHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619 461 SIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 517 (1043)
Q Consensus 461 eraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~ 517 (1043)
+....++...+..-.+.....+..+ .|++|.+..|+...+.....++++.+
T Consensus 495 d~~e~~~~~~~~~~~~~~~~~~~~~------k~~ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 495 DLLEPIDWKELKMLIDFDDSRSSTD------KYIEFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred hhhhhHHHHHHhhhccccccccchH------HHHHHHHhccchhHhHhhchHHHHHH
Confidence 6667777666643322222222222 29999999999999998888888887
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-45 Score=401.84 Aligned_cols=455 Identities=18% Similarity=0.254 Sum_probs=369.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
-..+|..|++|-.+...|++|+..-+.. .++..+|.||||||...-.+..||++|+++|+++..+..||+|+.||+..
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq--~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQ--KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 3568889999999999999999987766 79999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh-cCCCccHHH
Q 001619 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL-RFPSKKLHH 181 (1043)
Q Consensus 103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL-~~p~~~l~~ 181 (1043)
+|.--.+|..|+-++... |+++.||.+|+|=+.--| ....|..|++||.++..++.||.||.|.+ ..|.-..|.
T Consensus 137 lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~w~P----~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi 211 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEML-GNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI 211 (677)
T ss_pred cchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH
Confidence 999999999999988777 999999999999988766 46799999999999999999999999995 567667788
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~ 261 (1043)
.|++|++..+... ..+.+++..++..- .....+.+-...+.|.+..++.+|||.||+|.... ..-.++.
T Consensus 212 kyarFE~k~g~~~---------~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae 280 (677)
T KOG1915|consen 212 KYARFEEKHGNVA---------LARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE 280 (677)
T ss_pred HHHHHHHhcCcHH---------HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence 8888877655422 23455555443221 00001122334567778889999999999974211 0012234
Q ss_pred HHHHHHHHHHHH----------h--ccc--CCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-------
Q 001619 262 QLDEKINCFENL----------I--RRP--YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA------- 320 (1043)
Q Consensus 262 ~~~~~~~~fE~~----------i--~r~--~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~------- 320 (1043)
+++.++..||+. | +|. |......||.+++.|..|+.+++..|+.++++.+|||||...|
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 444444444442 2 121 2222336899999999999999999999999999999997543
Q ss_pred --CcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhH
Q 001619 321 --DYPEFWMRYVDFMES-KGGREIASYALDRATQIFLK----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI 393 (1043)
Q Consensus 321 --~~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~ 393 (1043)
.+.-||++||-|.+. ..|++.+|.||.+|+.+ .| ..++||++||.||.|+.++..||+++.+|+.. +|+ .
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK-~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPK-D 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCc-h
Confidence 456899999999875 56899999999999986 44 35689999999999999999999999999975 454 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 001619 394 EKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYS 473 (1043)
Q Consensus 394 ~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~ 473 (1043)
+++..|++||..++++|++|++|++-|+. .|.....| ..|++||...|+ .+|+|+||+-|++.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W--------~kyaElE~~Lgd---tdRaRaifelAi~q 500 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAW--------SKYAELETSLGD---TDRARAIFELAISQ 500 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHH--------HHHHHHHHHhhh---HHHHHHHHHHHhcC
Confidence 79999999999999999999999999996 66656566 455778888888 56999999999985
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 474 RPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 474 ~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.. .+.++.+|..|++||-..|..+.++++|.|.+..-++..-
T Consensus 501 p~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 501 PA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred cc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 32 2678999999999999999999999999999998776543
No 5
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=358.96 Aligned_cols=434 Identities=20% Similarity=0.335 Sum_probs=348.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P 104 (1043)
..++.|+.||+|++.|..+|++++. .+++++|.+||+.+..||.+...|+.||+.|....+++.+.++|.|+|.. -
T Consensus 8 ~~~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-v 83 (656)
T KOG1914|consen 8 NPRERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-V 83 (656)
T ss_pred CHHHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H
Confidence 3488999999999999999998876 58999999999999999999999999999999999999999999999998 5
Q ss_pred CCHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---------hhhhhhHHHHHHHH
Q 001619 105 YSVDVWFHYCSLSMSTFEDP----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1043)
Q Consensus 105 ~s~~LWl~Y~~~~~~~~~~~----e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~---------~~~~e~a~~iy~ra 171 (1043)
.+++||..|+.|..+..+.. +.....|+-|+..+|++..|..||..|+.|.+. ...++.+|++|.|+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 67999999999998874443 345677999999999999999999999999974 34688999999999
Q ss_pred hcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 001619 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1043)
Q Consensus 172 L~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~ 251 (1043)
|..|..+++..|..|+.|...++..++. +.+ .+.+..
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tar------K~i-------------------------~e~s~~------------ 200 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITAR------KFI-------------------------GERSPE------------ 200 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHH------HHH-------------------------HhhCHH------------
Confidence 9999999999999999999886532220 000 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----CChHHHHHHHHHHHHHHHcC------C--hHHHHHHHHHHhccC
Q 001619 252 IGEQIYKEASQLDEKINCFENLIRRPYFHVKP----LDDIQLKNWHDYLSFAEKQG------D--FDWVVKLYERCLIPC 319 (1043)
Q Consensus 252 ~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~----~~p~~~~~W~~yi~~e~~~g------~--~e~~~~lyerAl~~~ 319 (1043)
|..|..++..+...-++++|....+.+ ..-..+++|+++|+||+.++ + ..|+..+|+.|+...
T Consensus 201 -----Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l 275 (656)
T KOG1914|consen 201 -----YMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL 275 (656)
T ss_pred -----HHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 334444444555555666654333222 12357899999999998764 1 348999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC---HHHHHHHHH
Q 001619 320 ADYPEFWMRYVDFMESKGG--------------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGD---TSAARAAFP 382 (1043)
Q Consensus 320 ~~~~~LWl~yAk~~e~~g~--------------~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~---~d~Ar~ll~ 382 (1043)
+.++++|+.|+.|+...++ -++|+++|||++....+.+..++.+++.+++..-+ .+....++.
T Consensus 276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~ 355 (656)
T KOG1914|consen 276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYN 355 (656)
T ss_pred hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence 9999999999999998887 68999999999998777777899999999987666 778888888
Q ss_pred hhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH--------HHHH-----------
Q 001619 383 ESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF--------SRLT----------- 443 (1043)
Q Consensus 383 ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~--------ar~~----------- 443 (1043)
+++....-+..-+|+.|+++-+|...++.||.+|.+|-+......++. ....++.| |--+
T Consensus 356 ~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf-Va~A~mEy~cskD~~~AfrIFeLGLkkf~d~ 434 (656)
T KOG1914|consen 356 KLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF-VAAALMEYYCSKDKETAFRIFELGLKKFGDS 434 (656)
T ss_pred HHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh-HHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Confidence 887643333334799999999999999999999999999754331111 12333333 1001
Q ss_pred --H-HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619 444 --Y-TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 444 --~-~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~ 520 (1043)
| ..|+.|+...++.. .+|.||||++.. .++++..+.+|..|++||-..|++..+.++..|...+||..
T Consensus 435 p~yv~~YldfL~~lNdd~---N~R~LFEr~l~s------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 435 PEYVLKYLDFLSHLNDDN---NARALFERVLTS------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred hHHHHHHHHHHHHhCcch---hHHHHHHHHHhc------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 1 56788888877754 499999999984 57778899999999999999999999999999999999953
No 6
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7e-37 Score=333.34 Aligned_cols=435 Identities=16% Similarity=0.255 Sum_probs=297.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSI--------------- 89 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~--------------- 89 (1043)
.+|++|.-+-.++.+|++|+++--+. ..+..+|.|+.||+...|.-..+|.+|+-.|+.+|++
T Consensus 95 v~ERALdvd~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P 172 (677)
T KOG1915|consen 95 VFERALDVDYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP 172 (677)
T ss_pred HHHHHHhcccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence 57788888888999999998864444 5677788888888888888888888888777776655
Q ss_pred ------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619 90 ------------------DKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY 151 (1043)
Q Consensus 90 ------------------e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y 151 (1043)
+.||.+|+|.|.++| .+.-|+.|++|+.++ |++..+|.||++|++.++.+.....+..++
T Consensus 173 ~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~-g~~~~aR~VyerAie~~~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 173 DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKH-GNVALARSVYERAIEFLGDDEEAEILFVAF 250 (677)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555555555543 455666666666666 566666666666666666655555666666
Q ss_pred HHHHHHhhhhhhHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhhhhhh--hhhHHHHHHhhhccccccCccchhhhH
Q 001619 152 IEFEISQQRWSSLAQIFVQTLR-FPSKKLHHYYDSFKKLAGAWKEELECES--DSAMEFQSELVLEGEVPAYYKDDETSS 228 (1043)
Q Consensus 152 i~fe~~~~~~e~a~~iy~raL~-~p~~~l~~~~~~y~~~~~~~~e~l~~~~--~~~~~~~~e~i~~~~l~~~~~~~e~~~ 228 (1043)
++||+.+..+++++-||.-+|. +|......++..|..|.+.+.+....+. .+..+.-++..+. ..-.++|.|.
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~----~np~nYDsWf 326 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS----KNPYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH----hCCCCchHHH
Confidence 6666666666666666666663 5555555555555555554332111100 0000011111111 0111222232
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh-----HHHHHHHHHHHHHH-Hc
Q 001619 229 VIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD-----IQLKNWHDYLSFAE-KQ 302 (1043)
Q Consensus 229 ~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p-----~~~~~W~~yi~~e~-~~ 302 (1043)
..-++.+. .++...-+..||++|.. +.+... --.-+|+.|+-|++ ..
T Consensus 327 dylrL~e~-----------------------~g~~~~Ire~yErAIan----vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 327 DYLRLEES-----------------------VGDKDRIRETYERAIAN----VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHHHHHh-----------------------cCCHHHHHHHHHHHHcc----CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111 22333446677777742 111111 12347888877765 45
Q ss_pred CChHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH
Q 001619 303 GDFDWVVKLYERCLIPCAD----YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 303 g~~e~~~~lyerAl~~~~~----~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar 378 (1043)
.|.++++.+|.+||..-|+ +..+|++||.|+.++.++..||+++.+|+.. +|. +++.-.|.++|...+++|++|
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK-~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPK-DKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCc-hhHHHHHHHHHHHHhhHHHHH
Confidence 7899999999999986554 5799999999999999999999999999877 322 258889999999999999999
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 001619 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRS 458 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~ 458 (1043)
+||++.+. ..|...-.|++|+.||..+|+.|+||.+|+-||+. |. +.-..++|..|+.||...|.
T Consensus 458 kLYEkfle-~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-------p~-----ldmpellwkaYIdFEi~~~E-- 522 (677)
T KOG1915|consen 458 KLYEKFLE-FSPENCYAWSKYAELETSLGDTDRARAIFELAISQ-------PA-----LDMPELLWKAYIDFEIEEGE-- 522 (677)
T ss_pred HHHHHHHh-cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-------cc-----cccHHHHHHHhhhhhhhcch--
Confidence 99999994 67777889999999999999999999999999994 32 12234567899999998887
Q ss_pred hHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhhCCCCcc
Q 001619 459 HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD-----LCG-----------TIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 459 ~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee-----~~G-----------~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.+++|+|+++.|...+-. .+|.-+..|+- ..| ++..|+++++||...+..++.
T Consensus 523 -~ekaR~LYerlL~rt~h~----------kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 523 -FEKARALYERLLDRTQHV----------KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred -HHHHHHHHHHHHHhcccc----------hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 679999999999865543 25666677764 335 789999999999999876653
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=304.31 Aligned_cols=450 Identities=16% Similarity=0.174 Sum_probs=324.7
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
...-.+.++|+..|.|+.+|..+++ ++ .+.+ +|.+++||++.+|.|.++|..|+++| .|+.|++++.+|-
T Consensus 364 ~K~RVlRKALe~iP~sv~LWKaAVe-lE----~~~d-arilL~rAveccp~s~dLwlAlarLe----tYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALEHIPRSVRLWKAAVE-LE----EPED-ARILLERAVECCPQSMDLWLALARLE----TYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHh-cc----ChHH-HHHHHHHHHHhccchHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3456789999999999999999999 45 2444 99999999999999999999999998 5899999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC---CC----------------------------------
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD---YL---------------------------------- 143 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~---~~---------------------------------- 143 (1043)
+.+|.+..||+.-++++..+ |+++.+.++.+|++..+-.. ..
T Consensus 434 e~iptd~~IWitaa~LEE~n-gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEAN-GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 99999999999999999888 88888888888888655222 10
Q ss_pred --cHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCc-cHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccccc
Q 001619 144 --CHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA 219 (1043)
Q Consensus 144 --s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~-~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~ 219 (1043)
-..-|..-+++.++.+.++.+|.||..+|.. |.. .+|.....|++..+..++... .+.+++. .
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A--------llqkav~-----~ 579 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA--------LLQKAVE-----Q 579 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH--------HHHHHHH-----h
Confidence 0124444444445555677788888888764 333 456555555555444332111 0000000 0
Q ss_pred CccchhhhHHH--HhhcCCchhhHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHhcccCCCCCCCCh
Q 001619 220 YYKDDETSSVI--KDLLDPSVDLVRSKAIQKYR----FIGEQIYKEA-------SQLDEKINCFENLIRRPYFHVKPLDD 286 (1043)
Q Consensus 220 ~~~~~e~~~~i--~~~~~~~~~~e~ar~i~~~~----~~~~~~y~~a-------~~~~~~~~~fE~~i~r~~~~~~~~~p 286 (1043)
.-..+.+|... ..|. .|+...||.|.... .-.+.+|-.+ .+....|..|-++-. ..
T Consensus 580 ~pkae~lwlM~ake~w~--agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---------~s 648 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWK--AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---------IS 648 (913)
T ss_pred CCcchhHHHHHHHHHHh--cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---------cC
Confidence 00111112111 1111 13333344332210 0001111111 111122222222211 12
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1043)
Q Consensus 287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~ 366 (1043)
....+|.+++.|+.-.++.++++.++|+||+.+|+++.||++....++..++++.||..|..+++. +|.++-+|+..++
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 235699999999999999999999999999999999999999999999999999999999999988 7788789999999
Q ss_pred HHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH--
Q 001619 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY-- 444 (1043)
Q Consensus 367 ~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~-- 444 (1043)
+|++.|++-+||.+|++++. ..|+...+|+..+.+|.+.|+.+.|+.+..+||.. .|....||..-..++-
T Consensus 728 leEk~~~~~rAR~ildrarl-kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe------cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARL-KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE------CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHhcchhhHHHHHHHHHh-cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccchhHHHHHHhccCc
Confidence 99999999999999999985 46778899999999999999999999999999997 7777888865311100
Q ss_pred ---HHHHHHHHHhC--------------CCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHH
Q 001619 445 ---TELIKFTMVHG--------------GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIR 507 (1043)
Q Consensus 445 ---~~~~~fe~~~g--------------~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~ 507 (1043)
...+.-+++-. ..+.++++|+.|+||+..+|+. .++|-.+..|+..+|+-+.-.
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~---------GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN---------GDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---------chHHHHHHHHHHHhCCHHHHH
Confidence 11111111100 0123789999999999999997 467999999999999999999
Q ss_pred HHHHHHHhhCCCCcc
Q 001619 508 NAWNQHIKLFPHTVR 522 (1043)
Q Consensus 508 ~~~~ra~k~~p~~~~ 522 (1043)
.+|.++..+=|.-|.
T Consensus 872 ev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGE 886 (913)
T ss_pred HHHHHHhccCCCCCc
Confidence 999999999887665
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=3.2e-29 Score=282.35 Aligned_cols=475 Identities=15% Similarity=0.230 Sum_probs=333.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCC--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIEN----SCP--DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~----~~~--~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~l 95 (1043)
-...||++++..|.|++.|..|++.-.. .++ .-+...+..|||+|...-..+.+|+.|+.+..+.+++.+.|.+
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence 3457999999999999999999964322 233 3457788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC------------------------------
Q 001619 96 FERAVQSATY--SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL------------------------------ 143 (1043)
Q Consensus 96 feRAL~~~P~--s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~------------------------------ 143 (1043)
|.|||...|- +-+||-.|++|+..+ +-++.+.++|+|-|+..|.+-.
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence 9999999885 679999999999988 7777888888888865544310
Q ss_pred -----c--------------------------------------HHHHHHHHHHHHHhhhhhhHHHHHHHHhcC--CCcc
Q 001619 144 -----C--------------------------------------HTMWDKYIEFEISQQRWSSLAQIFVQTLRF--PSKK 178 (1043)
Q Consensus 144 -----s--------------------------------------~~IW~~yi~fe~~~~~~e~a~~iy~raL~~--p~~~ 178 (1043)
+ +.||...+++..+.|.+++|+.+|++++.. --.+
T Consensus 204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD 283 (835)
T KOG2047|consen 204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD 283 (835)
T ss_pred hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence 1 246666666666678899999999999853 2235
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhhhh------------------------------------hHH-------------
Q 001619 179 LHHYYDSFKKLAGAWKEE---LECESDS------------------------------------AME------------- 206 (1043)
Q Consensus 179 l~~~~~~y~~~~~~~~e~---l~~~~~~------------------------------------~~~------------- 206 (1043)
....|+.|..|....-.. ++.+... .+.
T Consensus 284 Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~ 363 (835)
T KOG2047|consen 284 FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNA 363 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCCh
Confidence 566666666555431100 0000000 000
Q ss_pred -----HHHHhhhccccccCc-cchhhhHHHHhhcCCchhhHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHH
Q 001619 207 -----FQSELVLEGEVPAYY-KDDETSSVIKDLLDPSVDLVRSKAIQKYR------FIG--EQIYKEASQLDEKINCFEN 272 (1043)
Q Consensus 207 -----~~~e~i~~~~l~~~~-~~~e~~~~i~~~~~~~~~~e~ar~i~~~~------~~~--~~~y~~a~~~~~~~~~fE~ 272 (1043)
...+++..-.-.... .-..+|+.+++++++.+.++.||.|.+-. ++. ..+|-.-.+...+-..|+.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 000111100000000 01235666777777777888888776521 111 1111111111112223333
Q ss_pred Hhc---c----------cCCCCCC--CC--hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 001619 273 LIR---R----------PYFHVKP--LD--DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES 335 (1043)
Q Consensus 273 ~i~---r----------~~~~~~~--~~--p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~ 335 (1043)
+++ + -++.+.. +. -.+..+|..|+++++..|.++..+.+|+|.+..---.+.+-++||.|++.
T Consensus 444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe 523 (835)
T KOG2047|consen 444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE 523 (835)
T ss_pred HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 321 1 1111111 00 04668999999999999999999999999998766678999999999999
Q ss_pred cCChHHHHHHHHHHHHHHh-cccchHHHHH-HHHHHHhC--CHHHHHHHHHhhhhCCChhhHH-HHHHHHHHHHHcCCHH
Q 001619 336 KGGREIASYALDRATQIFL-KRLPVIHLFN-ARYKEQIG--DTSAARAAFPESYIDSDSRFIE-KVTFKANMERRLGNFV 410 (1043)
Q Consensus 336 ~g~~e~Ar~ilerA~~~~~-~~~p~iwl~~-A~~E~~~g--~~d~Ar~ll~ral~~~~~~~~~-lw~~~a~lE~~~G~~e 410 (1043)
+.-+++|-++|+|++.+|. |..-+||..| .+|-.+.| .+++||.+|++|++.++|...+ +|+.|+.||++.|-..
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998864 3455799887 45666766 5899999999999988887776 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCccHHHHHHH---HH---------HHH----------------HHHHHHHHHhCCCchHHH
Q 001619 411 AACDTYKEALETAAEQRKFHTLPLLYVQF---SR---------LTY----------------TELIKFTMVHGGRSHISI 462 (1043)
Q Consensus 411 ~Ar~lyekale~~~~~~~~p~~~~l~~~~---ar---------~~~----------------~~~~~fe~~~g~~~~ler 462 (1043)
.|.++|++|........ -..+|..| |. .+| +.++.||.+.|. ++|
T Consensus 604 ~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE---idR 676 (835)
T KOG2047|consen 604 HAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE---IDR 676 (835)
T ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh---HHH
Confidence 99999999887532110 12233333 32 233 678889999998 789
Q ss_pred HHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619 463 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN 511 (1043)
Q Consensus 463 aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ 511 (1043)
||.|+.-+-..|++. --.++|..|-+||-.|||-+++++++.
T Consensus 677 ARaIya~~sq~~dPr-------~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPR-------VTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHhhhhcCCCc-------CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999988877664 234689999999999999999888874
No 9
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.97 E-value=7.3e-29 Score=269.40 Aligned_cols=435 Identities=13% Similarity=0.235 Sum_probs=328.8
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~ 101 (1043)
+...|.+.|+.||.|+-.|..+|..++.. +..++.|++||.++.-||.-...|..|+.-|...+++..+..+|.|+|.
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 55699999999999999999999999987 8999999999999999999999999999988888899999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---------hhhhhhHHHH
Q 001619 102 SATYSVDVWFHYCSLSMSTFEDP-----NDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQI 167 (1043)
Q Consensus 102 ~~P~s~~LWl~Y~~~~~~~~~~~-----e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~---------~~~~e~a~~i 167 (1043)
. ..+++||..|+.+..+....+ -.+-++|+-.+.+.+.+..+..+|..|+.|.+. ...++.+|++
T Consensus 105 k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 105 K-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8 668999999999998763222 235677888888888888899999999999874 3568899999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHH
Q 001619 168 FVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQ 247 (1043)
Q Consensus 168 y~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~ 247 (1043)
|.|+|..|..+++..|..|..|...++...+ .+.+. +.+..+..||+.|
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~Ta------rKfvg-------------------------e~sp~ym~ar~~y 232 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITA------RKFVG-------------------------ETSPIYMSARQRY 232 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHH------HHHhc-------------------------ccCHHHHHHHHHH
Confidence 9999999999999999999999887653221 11111 0111223344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC----CCCChHHHHHHHHHHHHHHHcC-----C--hHHHHHHHHHHh
Q 001619 248 KYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV----KPLDDIQLKNWHDYLSFAEKQG-----D--FDWVVKLYERCL 316 (1043)
Q Consensus 248 ~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~----~~~~p~~~~~W~~yi~~e~~~g-----~--~e~~~~lyerAl 316 (1043)
.. +..+-+++++.-+-. ..........|..+|+|+..+| + ..|+..+|+.++
T Consensus 233 qe-----------------~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~ 295 (660)
T COG5107 233 QE-----------------IQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQIL 295 (660)
T ss_pred HH-----------------HHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHH
Confidence 32 222222221100000 0011134456999999998764 2 348889999999
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--------
Q 001619 317 IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-------- 388 (1043)
Q Consensus 317 ~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-------- 388 (1043)
...+..+++|+.|..|+...+|...|....+||.. .+|.+.+.++++++-.++-+..+..|++++...
T Consensus 296 ~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~----~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~ 371 (660)
T COG5107 296 DYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE----MSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGE 371 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc----CCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999998888864 588899999999998888888888777765310
Q ss_pred ---------C------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH--------
Q 001619 389 ---------D------------SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF-------- 439 (1043)
Q Consensus 389 ---------~------------~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~-------- 439 (1043)
. .++.-+|+-+++..++...++.||++|-++-+..+.+..+. ....++.|
T Consensus 372 s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy-i~~A~~E~~~~~d~~t 450 (660)
T COG5107 372 SESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY-IYCAFIEYYATGDRAT 450 (660)
T ss_pred hhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee-eeHHHHHHHhcCCcch
Confidence 0 12233677788888999999999999999988643221111 12334443
Q ss_pred HHHHH--------------HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHH
Q 001619 440 SRLTY--------------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHD 505 (1043)
Q Consensus 440 ar~~~--------------~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~ 505 (1043)
|.-++ ..|..|+...++. +.||+|||.++...-+ ...+.+|.-|++||-.+|++..
T Consensus 451 a~~ifelGl~~f~d~~~y~~kyl~fLi~inde---~naraLFetsv~r~~~-------~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 451 AYNIFELGLLKFPDSTLYKEKYLLFLIRINDE---ENARALFETSVERLEK-------TQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH---HHHHHHHHHhHHHHHH-------hhhhHHHHHHHHHHHhhcchHH
Confidence 11111 4566677776664 3699999998874332 3457899999999999999999
Q ss_pred HHHHHHHHHhhCCCCcc
Q 001619 506 IRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 506 a~~~~~ra~k~~p~~~~ 522 (1043)
+..+.+|....+|....
T Consensus 521 v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 521 VYSLEERFRELVPQENL 537 (660)
T ss_pred HHhHHHHHHHHcCcHhH
Confidence 99999999999998655
No 10
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.7e-23 Score=239.94 Aligned_cols=431 Identities=19% Similarity=0.229 Sum_probs=294.8
Q ss_pred ccccccCCCCCCCCC---ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001619 6 SNLESLSAEPNSPVG---FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADH 82 (1043)
Q Consensus 6 ~~~~~~~~~~~~~~~---~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~ 82 (1043)
|++++.+.++++..+ -++..|+..+..|++++...+.||..+.+. +++++++...+.+.+.+|++.-+|+.|+..
T Consensus 79 Se~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d 156 (881)
T KOG0128|consen 79 SEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKD 156 (881)
T ss_pred CcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 556666666666554 378899999999999999999999999988 999999999999999999999999999998
Q ss_pred HHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHhcCCCCC-cHHHHHHHH
Q 001619 83 KARL---CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF------EDPNDVRRLFKRALSFVGKDYL-CHTMWDKYI 152 (1043)
Q Consensus 83 e~~~---~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~------~~~e~ar~lferAL~~lp~~~~-s~~IW~~yi 152 (1043)
+... ++...+..+|++||.. ..++.||..|+.|+.... ++++..|.+|+|||+.+|.+.. ...||..|+
T Consensus 157 ~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~ 235 (881)
T KOG0128|consen 157 ELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYR 235 (881)
T ss_pred HHhhccCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHH
Confidence 8654 5778999999999998 889999999999987653 4578899999999999998864 458999999
Q ss_pred HHHHHhh---hhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHH
Q 001619 153 EFEISQQ---RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV 229 (1043)
Q Consensus 153 ~fe~~~~---~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~ 229 (1043)
+|+..+- ..+.+..+|.+.|+.| .++......|.++.+..- . +.+
T Consensus 236 E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~------------------~---------~~~---- 283 (881)
T KOG0128|consen 236 EFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHV------------------Y---------DVE---- 283 (881)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcch------------------H---------HHH----
Confidence 9998642 2356888899999988 333333333433332100 0 000
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 001619 230 IKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVV 309 (1043)
Q Consensus 230 i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~ 309 (1043)
....+.....+...+..||+.+. ..+.....|+.|++|+.+.|++-++.
T Consensus 284 -----------------------~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 284 -----------------------TKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred -----------------------hccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 00001111122233445666654 45778899999999999999999999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHH-HHHHHHHhhhhC
Q 001619 310 KLYERCLIPCADYPEFWMRYVDFMESKGG-REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-AARAAFPESYID 387 (1043)
Q Consensus 310 ~lyerAl~~~~~~~~LWl~yAk~~e~~g~-~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d-~Ar~ll~ral~~ 387 (1043)
.+|+|++.-.+....+|+.|.-|+...-+ ...+..++-||++. ++..-.+|-.+-.-.+|++... .-...|.+++..
T Consensus 333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 99999998777779999999998765433 33445666677654 2222245555442223333222 223344444432
Q ss_pred CChhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHhhccCCc-----cHHHHHHH----------HHHH---
Q 001619 388 SDSRFIEKVTFKANMERRLG------NFVAACDTYKEALETAAEQRKFHT-----LPLLYVQF----------SRLT--- 443 (1043)
Q Consensus 388 ~~~~~~~lw~~~a~lE~~~G------~~e~Ar~lyekale~~~~~~~~p~-----~~~l~~~~----------ar~~--- 443 (1043)
.+.++..|..+-++.+ .++.-|+.|..|.+.+........ .-++|..+ +|.+
T Consensus 412 ----~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~ 487 (881)
T KOG0128|consen 412 ----TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF 487 (881)
T ss_pred ----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 1223334433334333 245556666666666543322211 12233322 2222
Q ss_pred ------------HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619 444 ------------YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN 511 (1043)
Q Consensus 444 ------------~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ 511 (1043)
|+.++++|..+|+.. -+|.++.+|+...-+ +++...+++.|..||+.+|+++.+.....
T Consensus 488 imty~~~~iag~Wle~~~lE~~~g~~~---~~R~~~R~ay~~~~~------~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 488 IMTYGGGSIAGKWLEAINLEREYGDGP---SARKVLRKAYSQVVD------PEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred cccCCcchHHHHHHHHHhHHHHhCCch---hHHHHHHHHHhcCcC------chhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 366778888888854 599999999875433 36678899999999999999988776665
Q ss_pred HHHhh
Q 001619 512 QHIKL 516 (1043)
Q Consensus 512 ra~k~ 516 (1043)
+-+..
T Consensus 559 ~~~pr 563 (881)
T KOG0128|consen 559 KVLPR 563 (881)
T ss_pred hhcch
Confidence 54443
No 11
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.88 E-value=3.2e-21 Score=232.82 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK 368 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E 368 (1043)
..+|.+|+++|...|+-+.+..+||||...|. ...++..++.+|++.+.+++|.++|++.++.|- ....+|+.|+.|.
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHH
Confidence 45899999999889998999999999998764 458899999999999999999999999998855 6667999999999
Q ss_pred HHhCCHHHHHHHHHhhhhCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Q 001619 369 EQIGDTSAARAAFPESYIDSDSR--FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTE 446 (1043)
Q Consensus 369 ~~~g~~d~Ar~ll~ral~~~~~~--~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~ 446 (1043)
.++++-++||.++.||++ +.|+ ..++..++|.||.+.|+.+++|.+|+..+.. +|.-..+| ..
T Consensus 1575 l~~ne~~aa~~lL~rAL~-~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKRtDlW--------~V 1639 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALK-SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKRTDLW--------SV 1639 (1710)
T ss_pred hcccHHHHHHHHHHHHHh-hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------CccchhHH--------HH
Confidence 999999999999999996 4554 7889999999999999999999999999987 77666666 66
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619 447 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 447 ~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p 518 (1043)
|++.|.++|+. +.+|+||+|++.. .|++..++.++..||+||..+|+.+.+..+=+||++.+.
T Consensus 1640 Yid~eik~~~~---~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1640 YIDMEIKHGDI---KYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred HHHHHHccCCH---HHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Confidence 68899999984 4799999999984 678899999999999999999999999999999998874
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=9e-17 Score=205.76 Aligned_cols=342 Identities=10% Similarity=0.011 Sum_probs=168.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
++.+++..++++++..+|.+...|..++......|++++|..+|++++...|.+...|..++...... +++++|.++|+
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555555555555555555555554444 55555555555
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHH--HHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYD--SFKKLAGAWKEELECESDSAMEFQSE 210 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~--~y~~~~~~~~e~l~~~~~~~~~~~~e 210 (1043)
+++...|. +..+|..++.+....|+.+.+..+|.+++...+......+. .+....+.+.+++ ..+..
T Consensus 524 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--------~~~~~ 592 (899)
T TIGR02917 524 KVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL--------AILNE 592 (899)
T ss_pred HHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH--------HHHHH
Confidence 55554443 23455555555555555555555555554432222111111 0000001111110 00100
Q ss_pred hhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001619 211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF-----------IGEQIYKEASQLDEKINCFENLIRRPYF 279 (1043)
Q Consensus 211 ~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~-----------~~~~~y~~a~~~~~~~~~fE~~i~r~~~ 279 (1043)
. .+. ...+.+.+..+.......+.++.|...+.... .....|....+...+...|++++.
T Consensus 593 ~-~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 663 (899)
T TIGR02917 593 A-ADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---- 663 (899)
T ss_pred H-HHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----
Confidence 0 000 00111122222222222233333333222100 000111111222233334444432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccch
Q 001619 280 HVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV 359 (1043)
Q Consensus 280 ~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~ 359 (1043)
.+|.+...|..++.++...|+++.+..+++++....+....+|...+..+...|++++|...|.+++.. .++. .
T Consensus 664 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~ 737 (899)
T TIGR02917 664 ----LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSS-Q 737 (899)
T ss_pred ----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc-h
Confidence 345556666666666666666666666666666666666666666666666667777777777776665 2222 4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 360 iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
++...+.+....|++++|...+.+++.. .++...++...+.+....|+++.|..+|+++++.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5566666666777777777777776643 3444566666677777777777777777777775
No 13
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.84 E-value=1.8e-17 Score=185.52 Aligned_cols=397 Identities=15% Similarity=0.190 Sum_probs=224.6
Q ss_pred CCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCH----HHH
Q 001619 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSI----DKV 92 (1043)
Q Consensus 18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~----e~a 92 (1043)
+.+..-+.||+.+..+|++...|..||+..-.. .+++.+.++|-|+|..- ++.+||+.|+..-.+. +.. +..
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 667777899999999999999999999965555 79999999999999887 6799999999976544 332 344
Q ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh--
Q 001619 93 VEVFERAVQSA---TYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ-- 159 (1043)
Q Consensus 93 ~~lfeRAL~~~---P~s~~LWl~Y~~~~~~~~--------~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~-- 159 (1043)
...|+=|+..+ +.|..||..|+.|+.... ..++.+|++|.|||. .|++- -..||..|..||....
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm~n-lEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPMHN-LEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-Ccccc-HHHHHHHHHHHHHHHHHH
Confidence 55566666654 678899999999986431 247889999999986 56653 3689999999998653
Q ss_pred -----------hhhhHHHHHHHHhc-----------CCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccc
Q 001619 160 -----------RWSSLAQIFVQTLR-----------FPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEV 217 (1043)
Q Consensus 160 -----------~~e~a~~iy~raL~-----------~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l 217 (1043)
.+-.||++|+.... +|..........+
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv------------------------------- 237 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQV------------------------------- 237 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHH-------------------------------
Confidence 23345555443311 1211111001111
Q ss_pred ccCccchhhhHHHHhhcCCch------hhHHHH--HHHHHH----HHHHHHH-H------HHHHHH--------HHHHHH
Q 001619 218 PAYYKDDETSSVIKDLLDPSV------DLVRSK--AIQKYR----FIGEQIY-K------EASQLD--------EKINCF 270 (1043)
Q Consensus 218 ~~~~~~~e~~~~i~~~~~~~~------~~e~ar--~i~~~~----~~~~~~y-~------~a~~~~--------~~~~~f 270 (1043)
++|..+-+|....+ ..-.-| .+++.. .....+| + ...+++ .+...+
T Consensus 238 -------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 238 -------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred -------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 11111111111000 000001 111100 0000000 0 000000 000011
Q ss_pred HHHhcccCCCCC-CCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619 271 ENLIRRPYFHVK-PLDDIQLKNWHDYLSFAEKQGD---FDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASYA 345 (1043)
Q Consensus 271 E~~i~r~~~~~~-~~~p~~~~~W~~yi~~e~~~g~---~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~e~Ar~i 345 (1043)
| ++..|+... .+...+..++..|+++++...+ .+.+...|++++.. ..+..-+|+.|.+|..+...+..||.|
T Consensus 311 e--~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 311 E--AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 1 111111111 1222344555555665554333 45555566666543 233334466666666666666666666
Q ss_pred HHHHHHHHhcccchHHHHHHHHHH-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001619 346 LDRATQIFLKRLPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1043)
Q Consensus 346 lerA~~~~~~~~p~iwl~~A~~E~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~ 424 (1043)
|.+|.+. ....-.|+++.|-+|. -.++.+.|.+||+-+++. .++...+-.+|++|...+|+-+.||.+|++++...
T Consensus 389 F~kaR~~-~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~- 465 (656)
T KOG1914|consen 389 FKKARED-KRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV- 465 (656)
T ss_pred HHHHhhc-cCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-
Confidence 6666553 1111256666666654 345666666666666643 23345566677777777777777777777777641
Q ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 001619 425 EQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRP 475 (1043)
Q Consensus 425 ~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p 475 (1043)
.+ ...+..+|..|+.||.+.|+ ++-+++|-+|-...-|
T Consensus 466 ----l~------~~ks~~Iw~r~l~yES~vGd---L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 466 ----LS------ADKSKEIWDRMLEYESNVGD---LNSILKLEKRRFTAFP 503 (656)
T ss_pred ----CC------hhhhHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhcc
Confidence 11 12245567889999999998 5567777776555333
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=2e-16 Score=202.48 Aligned_cols=380 Identities=11% Similarity=-0.008 Sum_probs=205.4
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
.-...+++.+..+|.+...|..++..+... ++.+++..+|++++...|.....|..++......|++++|...|++++
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLAL--GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 345567777888888888888877766665 778888888888888888888888888877777778888888888888
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHH
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~ 180 (1043)
...|.....+..++...... ++.+++..+|++.+...|. ...+|...+......|+++.|..+|.+++.+.+....
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 500 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRS-GQFDKALAAAKKLEKKQPD---NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500 (899)
T ss_pred hhCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Confidence 77777666666666555555 6677777777776665554 3456666666666666677777777777654333222
Q ss_pred HHHHH---------HHHHHHHHHHhhhhhh-------------------hhhHHHHHHhhhccccccCccchhhhHHHHh
Q 001619 181 HYYDS---------FKKLAGAWKEELECES-------------------DSAMEFQSELVLEGEVPAYYKDDETSSVIKD 232 (1043)
Q Consensus 181 ~~~~~---------y~~~~~~~~e~l~~~~-------------------~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~ 232 (1043)
..+.. +.+.+..+.+.+.... ..+...+...+.. ...+.+.+..+..
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~ 575 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQ 575 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHH
Confidence 11110 0010111110000000 0000000000000 0000111111111
Q ss_pred hcCCchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHH
Q 001619 233 LLDPSVDLVRSKAIQKYR-----------FIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEK 301 (1043)
Q Consensus 233 ~~~~~~~~e~ar~i~~~~-----------~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~ 301 (1043)
.....+.++.|..+++.. ......|....+...++..|++.+. .+|.+...|..++..+..
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHH
Confidence 111222222222222110 0000111111222223333444432 234445556666665555
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
.|+++.+..+|++++..+|+....|..++..+...|+.+.|..+++++... .+..+.+|...+......|++++|.+.|
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655544 3344555666666666666666666666
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.+++... ++. ..+...+.+....|++++|...|+++++.
T Consensus 727 ~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 727 RKALKRA-PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHhhC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6666432 222 34555566666667777777777666665
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3e-18 Score=193.15 Aligned_cols=391 Identities=15% Similarity=0.166 Sum_probs=279.3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~ 101 (1043)
....-..+|+.+|.--+++..+.+.++.. +.+..+...|+.+++..|...+.|+..+......|+.+.|..+|..||.
T Consensus 101 s~a~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 101 SSAGSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 44455678999999999999999877766 8999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1043)
Q Consensus 102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~ 181 (1043)
.+|..+..-.....++... |..++|..-|-+|++..|. -.-.|....-.....|++-.+..-|++++++.+.-+..
T Consensus 179 lnP~l~ca~s~lgnLlka~-Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAE-GRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred cCcchhhhhcchhHHHHhh-cccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 9998888777777777666 8889999999999998875 24678888888888899888999999999876543333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~ 261 (1043)
++. ++. +|+++.
T Consensus 255 YiN-----LGn---------------------------------------------------------------V~ke~~ 266 (966)
T KOG4626|consen 255 YIN-----LGN---------------------------------------------------------------VYKEAR 266 (966)
T ss_pred Hhh-----HHH---------------------------------------------------------------HHHHHh
Confidence 221 010 011112
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH
Q 001619 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1043)
Q Consensus 262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~ 341 (1043)
....+...|++++. +.|+....+-..+-.+.+.|.+|-++.+|+|||...|++++.+.+.|.-+...|++.+
T Consensus 267 ~~d~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 267 IFDRAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred cchHHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 22233444555543 2355555555555555567788888888888888888888888888888877888888
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 342 Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
|...|.+|+.. ++..++-.-..+....+.|.++.|..+|.+|+. ..|.+.......+.+....|++++|...|++||.
T Consensus 339 a~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 339 AVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 88888888866 555565555566666777888888888888874 4566666677777777778888888888888887
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcC
Q 001619 422 TAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCG 501 (1043)
Q Consensus 422 ~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G 501 (1043)
. .|.+...|.+... -.+..|+ +..|-..+++|+..+|.- .+. ..-..-.-+.-|
T Consensus 417 I------~P~fAda~~NmGn--------t~ke~g~---v~~A~q~y~rAI~~nPt~--------AeA-hsNLasi~kDsG 470 (966)
T KOG4626|consen 417 I------KPTFADALSNMGN--------TYKEMGD---VSAAIQCYTRAIQINPTF--------AEA-HSNLASIYKDSG 470 (966)
T ss_pred c------CchHHHHHHhcch--------HHHHhhh---HHHHHHHHHHHHhcCcHH--------HHH-HhhHHHHhhccC
Confidence 6 5554543322211 0111222 445777788888877753 111 111222224558
Q ss_pred CHHHHHHHHHHHHhhCCCCcc
Q 001619 502 TIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 502 ~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
++..|...|+.|++.-|+...
T Consensus 471 ni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 471 NIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred CcHHHHHHHHHHHccCCCCch
Confidence 888888888888888776543
No 16
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.82 E-value=1.1e-16 Score=183.39 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=250.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAV 100 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~e~a~~lfeRAL 100 (1043)
--..|...|...|.....|.+++++--+. +.++++.+||||++..+|.|+.+|..|+.+.... |+.+.++.+|+||+
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34567788889999999999999976666 8999999999999999999999999999987654 78889999999999
Q ss_pred HhcC---CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh-----hhhhHHHHHHHHh
Q 001619 101 QSAT---YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ-----RWSSLAQIFVQTL 172 (1043)
Q Consensus 101 ~~~P---~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~-----~~e~a~~iy~raL 172 (1043)
..+. .|..||-.|++|+... ++...+-.+|+|-|. +|.+. -...+..|.++..... ..+.+.++-....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~q-ks~k~v~~iyeRile-iP~~~-~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQ-KSWKRVANIYERILE-IPLHQ-LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HhcccchhccHHHHHHHHHHhcc-ccHHHHHHHHHHHHh-hhhhH-hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 9875 4789999999999777 888999999999987 46554 2466667776665421 1122111111000
Q ss_pred ---cCCCcc-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHH---HHhhhccccccCccchhhh----HHHHhhcCCchhhH
Q 001619 173 ---RFPSKK-LHHYYDSFKKLAGAWKEELECESDSAMEFQ---SELVLEGEVPAYYKDDETS----SVIKDLLDPSVDLV 241 (1043)
Q Consensus 173 ---~~p~~~-l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~---~e~i~~~~l~~~~~~~e~~----~~i~~~~~~~~~~e 241 (1043)
.++... ....+..+...+..-...+.... +....+ .+.+-.+.. ...+.. ..|++.+-....++
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~-~~l~~~~~~~~~~~~~s~----~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEK-TILKRIVSIHEKVYQKSE----EEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHH-HHHHHHHHHHHHHHHhhH----hHHHHHHhhhhhccccccccCccc
Confidence 011110 01111111111111000000000 000000 000000000 000000 00000000001111
Q ss_pred HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 001619 242 RSK--AIQKY--RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLI 317 (1043)
Q Consensus 242 ~ar--~i~~~--~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~ 317 (1043)
.|. ....| ..+..+.|++ ....||+.+..- ..-.+.|.+|+.|....|+.+-+..++.+|.+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~------~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSR------VFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHH------HHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 110 00000 0111222222 223444444210 12347999999999999999999999999986
Q ss_pred -cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH---HHHHhhhhC--CChh
Q 001619 318 -PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR---AAFPESYID--SDSR 391 (1043)
Q Consensus 318 -~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar---~ll~ral~~--~~~~ 391 (1043)
.+++.+.+-+.+|.|.+..|+++.|+.+|++...-+ ++.-.+-+.++.+|.+.|+.+.+. .++...... ....
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i 438 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGI 438 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcch
Confidence 578999999999999999999999999999999886 777788899999999999999998 555444331 1223
Q ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619 392 FIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1043)
Q Consensus 392 ~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~ 444 (1043)
...++..++.|-... ++.+.|+.++.++++. +|.+-.+|+.+.++++
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~------~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI------LPDCKVLYLELIRFEL 486 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------CCccHHHHHHHHHHHH
Confidence 345677777776654 7899999999999997 7777888888877654
No 17
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=202.37 Aligned_cols=252 Identities=19% Similarity=0.235 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHhhhhhhHHHHHH
Q 001619 92 VVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC--HTMWDKYIEFEISQQRWSSLAQIFV 169 (1043)
Q Consensus 92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s--~~IW~~yi~fe~~~~~~e~a~~iy~ 169 (1043)
..+=|+|.|...|+|.-+|+.|+.|.+.. .++++||++++|||..+.+.-.. -.||.+|+.+|..+|.-+.+.++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 44568999999999999999999998888 88999999999999998654321 2699999999999998899999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHH
Q 001619 170 QTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY 249 (1043)
Q Consensus 170 raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~ 249 (1043)
||.++.. .+.-|+.+.+-+.. ...
T Consensus 1522 RAcqycd-----~~~V~~~L~~iy~k-----------------------------------------~ek---------- 1545 (1710)
T KOG1070|consen 1522 RACQYCD-----AYTVHLKLLGIYEK-----------------------------------------SEK---------- 1545 (1710)
T ss_pred HHHHhcc-----hHHHHHHHHHHHHH-----------------------------------------hhc----------
Confidence 9987532 12222222221110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC--cHHHHH
Q 001619 250 RFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD--YPEFWM 327 (1043)
Q Consensus 250 ~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~--~~~LWl 327 (1043)
|..|.+++.. .+++ +......|..|++|+.++.+-+.++.++.||+.+.|+ +.++--
T Consensus 1546 -------~~~A~ell~~------m~KK--------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1546 -------NDEADELLRL------MLKK--------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred -------chhHHHHHHH------HHHH--------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 1111121111 1111 1235679999999999999999999999999999988 889999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-ChhhHH-HHHHHHHHHHH
Q 001619 328 RYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFIE-KVTFKANMERR 405 (1043)
Q Consensus 328 ~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-~~~~~~-lw~~~a~lE~~ 405 (1043)
.+|.++-+.||.+.+|.+|+-.+..+ |...++|..|+++|.++|+.+.+|.+|+|++... .++-++ +|.+|+++|..
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999999999999999888774 4455799999999999999999999999999743 233343 78899999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 001619 406 LGNFVAACDTYKEALET 422 (1043)
Q Consensus 406 ~G~~e~Ar~lyekale~ 422 (1043)
.|+-+.+..+=.||++.
T Consensus 1684 ~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred cCchhhHHHHHHHHHHH
Confidence 99999888888888875
No 18
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.1e-15 Score=170.66 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 001619 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQ 101 (1043)
Q Consensus 23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~ 101 (1043)
...|.+++.+.+.|++.|..||.++.+. +...++..||..+|..+|+++++|+..+.||.+-+ +++.||.+|-|||.
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3568888899999999999999999887 66888899999999999999999999999987664 58999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhh
Q 001619 102 SATYSVDVWFHYCSLSMST 120 (1043)
Q Consensus 102 ~~P~s~~LWl~Y~~~~~~~ 120 (1043)
.+|.+++||.+|.++++..
T Consensus 169 ~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred cCCCChHHHHHHHHHHHHH
Confidence 9999999999999998765
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=3.4e-15 Score=184.61 Aligned_cols=413 Identities=12% Similarity=0.061 Sum_probs=270.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 001619 43 LLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE 122 (1043)
Q Consensus 43 ~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~ 122 (1043)
....+-+. ++++++...|++++...|. ..+|...+......|++++|...|++||+..|.+++.|...+...... +
T Consensus 133 ~G~~~~~~--~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l-g 208 (615)
T TIGR00990 133 KGNKAYRN--KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL-G 208 (615)
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C
Confidence 33333344 8999999999999999996 678988888888999999999999999999999999999999888887 8
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc--cHHHHHHHHHHH-----------
Q 001619 123 DPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK--KLHHYYDSFKKL----------- 189 (1043)
Q Consensus 123 ~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~--~l~~~~~~y~~~----------- 189 (1043)
++++|..-|..++..-+.. ...+-..+.+.... .+...+..+++.... ..+.....|...
T Consensus 209 ~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 9999999887776543332 11111111111110 011111111111000 000000000000
Q ss_pred -------------HHHHHHhhhh----hhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHH
Q 001619 190 -------------AGAWKEELEC----ESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFI 252 (1043)
Q Consensus 190 -------------~~~~~e~l~~----~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~ 252 (1043)
.......+.. ....+.+.+...+..+.+. ...+.... .
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~---------------------~~~a~a~~----~ 336 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG---------------------EKEAIALN----L 336 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC---------------------hhhHHHHH----H
Confidence 0000000000 0000111111111100000 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 001619 253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDF 332 (1043)
Q Consensus 253 ~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~ 332 (1043)
....+....+...++..|+++|. .+|.....|..++..+...|+++.+...|++|+...|+...+|...+..
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11112222233445556677764 4678888999999988889999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHH
Q 001619 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAA 412 (1043)
Q Consensus 333 ~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~A 412 (1043)
+...|++++|...|++++.. .|+....|+..+.+..+.|++++|...|.+++.. .|....+|..++.+....|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999987 6677788999999999999999999999999964 566678899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHH
Q 001619 413 CDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSL 492 (1043)
Q Consensus 413 r~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~l 492 (1043)
++.|+++++. .|.....+............-|. ..| +.+.|..++++|+...|+. ...+..
T Consensus 487 ~~~~~~Al~l------~p~~~~~~~~~~~l~~~a~~~~~-~~~---~~~eA~~~~~kAl~l~p~~---------~~a~~~ 547 (615)
T TIGR00990 487 IEKFDTAIEL------EKETKPMYMNVLPLINKALALFQ-WKQ---DFIEAENLCEKALIIDPEC---------DIAVAT 547 (615)
T ss_pred HHHHHHHHhc------CCccccccccHHHHHHHHHHHHH-Hhh---hHHHHHHHHHHHHhcCCCc---------HHHHHH
Confidence 9999999997 33222222221111111111111 112 3678999999999988875 223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001619 493 YLQFLDLCGTIHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 493 wl~fee~~G~~~~a~~~~~ra~k~~p~~ 520 (1043)
........|+.+.|.+.|+++++..+..
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 5555667899999999999999997653
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=6e-17 Score=182.73 Aligned_cols=357 Identities=14% Similarity=0.183 Sum_probs=284.4
Q ss_pred CccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 20 GFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERA 99 (1043)
Q Consensus 20 ~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRA 99 (1043)
.+.+..|+.+|+..|+.+++|+.+...+-.. ++.+.+-..|-.+|..+|..+-.-.....+....|..++|..+|-+|
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~--~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQ--GDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--CCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 3456789999999999999999998888776 88889999999999999999988888888888889999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccH
Q 001619 100 VQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL 179 (1043)
Q Consensus 100 L~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l 179 (1043)
++..|.-.-.|..++-..... |++..+..-|++|++.-|. |. ..++.......+.+.+++|...|.|++..-+...
T Consensus 211 i~~qp~fAiawsnLg~~f~~~-Gei~~aiq~y~eAvkldP~-f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQ-GEIWLAIQHYEEAVKLDPN-FL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HhhCCceeeeehhcchHHhhc-chHHHHHHHHHHhhcCCCc-ch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 999998889999998888777 8999999999999986553 22 3333333344455667777777777776422210
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 001619 180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKE 259 (1043)
Q Consensus 180 ~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~ 259 (1043)
.. .++ +.| .+++
T Consensus 287 ~a--------~gN----la~-------------------iYye------------------------------------- 298 (966)
T KOG4626|consen 287 VA--------HGN----LAC-------------------IYYE------------------------------------- 298 (966)
T ss_pred hh--------ccc----eEE-------------------EEec-------------------------------------
Confidence 00 000 000 0110
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCCh
Q 001619 260 ASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGR 339 (1043)
Q Consensus 260 a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~ 339 (1043)
-..+..++..|+++|. +.|+-.+.+...+.-++..|+..++...|.+||..|+++.+--.+++..+...|.+
T Consensus 299 qG~ldlAI~~Ykral~--------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALE--------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred cccHHHHHHHHHHHHh--------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 1122334556666664 45777888999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 340 e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka 419 (1043)
+.|..+|++|+.+ .+.+..-+-..|.+....|++++|...|+.|+. ..|.++..+..........|+.+.|...|.+|
T Consensus 371 e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 371 EEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 9999999999987 667777788888999999999999999999995 57888888888888899999999999999999
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 420 LETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 420 le~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
|.. .|++.. ...++...+.+..++..|-.-++.||...||.
T Consensus 449 I~~------nPt~Ae-----------AhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 449 IQI------NPTFAE-----------AHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred Hhc------CcHHHH-----------HHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 997 555443 33444445544445788999999999988886
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=3.7e-15 Score=196.26 Aligned_cols=405 Identities=12% Similarity=0.058 Sum_probs=258.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------------HHHHH--HHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD------------VWFHY--CSLSM 118 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~------------LWl~Y--~~~~~ 118 (1043)
++.+++...|+++|+.+|.+..+|..++......|++++|+..|++|++..|.+.. .|... +....
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999887642 23322 33444
Q ss_pred hhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHH-HHHHHhh
Q 001619 119 STFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA-GAWKEEL 197 (1043)
Q Consensus 119 ~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~-~~~~e~l 197 (1043)
.. ++++.|+..|++|+..-|. ....|..........|+++.|++.|++++++.+.+..........+. ...++++
T Consensus 363 ~~-g~~~eA~~~~~~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 363 KA-NNLAQAERLYQQARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 55 8999999999999998776 45677788888888999999999999999864443322221111111 1111111
Q ss_pred hhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001619 198 ECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRP 277 (1043)
Q Consensus 198 ~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~ 277 (1043)
. .+..+ ... . ...+.+. ........+ ......+....+...++..|+++++
T Consensus 439 ~--------~l~~l-~~~---------~-~~~~~~~-------~~~l~~~~~-~~~a~~~~~~g~~~eA~~~~~~Al~-- 489 (1157)
T PRK11447 439 A--------FIASL-SAS---------Q-RRSIDDI-------ERSLQNDRL-AQQAEALENQGKWAQAAELQRQRLA-- 489 (1157)
T ss_pred H--------HHHhC-CHH---------H-HHHHHHH-------HHHhhhhHH-HHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 1 01000 000 0 0000000 000000000 0011112223344455667777775
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----
Q 001619 278 YFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI----- 352 (1043)
Q Consensus 278 ~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~----- 352 (1043)
.+|.+..+|..++..+...|++++++.+|++++...|.....+..++.++...|+.++|...|+++...
T Consensus 490 ------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 490 ------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 568888889999999989999999999999999988999999999999988888888888887753210
Q ss_pred --------------------------------H--hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHH
Q 001619 353 --------------------------------F--LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTF 398 (1043)
Q Consensus 353 --------------------------------~--~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~ 398 (1043)
+ .+..+.+++..+.+..+.|++++|+.+|++++.. .|.....+..
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~ 642 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLG 642 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 0 1223345555556666666666666666666542 3444555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCcc
Q 001619 399 KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVL 478 (1043)
Q Consensus 399 ~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~ 478 (1043)
.+.+....|++++|+++|+++++. .|..+.++... .......|. .+.|..+|++++...|+..
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~------~p~~~~~~~~l--------a~~~~~~g~---~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPAT------ANDSLNTQRRV--------ALAWAALGD---TAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc------CCCChHHHHHH--------HHHHHhCCC---HHHHHHHHHHHhhhCccCC
Confidence 555655566666666666655553 22223222111 111122333 5679999999988655431
Q ss_pred ccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619 479 KVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 517 (1043)
Q Consensus 479 ~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~ 517 (1043)
. ......++.....+.+..|..+.|...|.+++.+.
T Consensus 706 ~---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 706 P---SMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred c---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 1 01122344445667778899999999999998755
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=2.5e-14 Score=188.48 Aligned_cols=418 Identities=11% Similarity=0.030 Sum_probs=221.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHc
Q 001619 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWR----------------KYADHKARL 86 (1043)
Q Consensus 23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~----------------~y~~~e~~~ 86 (1043)
...|++.+..+|.|.+.+...+..+... ++.+.+...++++++..|.+..+|. ..+++....
T Consensus 48 ~~~l~kl~~~~p~~p~~~~~~~~~~l~~--g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 48 RQSLYRLELIDPNNPDVIAARFRLLLRQ--GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3466777777777777777777766555 7777777778888888887777653 333345556
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHH
Q 001619 87 CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1043)
Q Consensus 87 ~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~ 166 (1043)
|++++|..+|++++...|....+=..|...+....+..+.|++.|++++..-|. +..+|..++.+....++.+.|..
T Consensus 126 g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHH
Confidence 777778888888777777666554444444333335667777777777776665 45677777777777777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHH
Q 001619 167 IFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAI 246 (1043)
Q Consensus 167 iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i 246 (1043)
+|++++..+...... ...+...+... .... +....+..+..
T Consensus 203 ~l~~~~~~~~~~~~a-a~~~~~~l~~~--------------------------~~~~-~~~~~l~~~l~----------- 243 (1157)
T PRK11447 203 VLEQMAKSPAGRDAA-AQLWYGQIKDM--------------------------PVSD-ASVAALQKYLQ----------- 243 (1157)
T ss_pred HHHHHhhCCCchHHH-HHHHHHHHhcc--------------------------CCCh-hhHHHHHHHHH-----------
Confidence 777776654321100 00000000000 0000 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHH
Q 001619 247 QKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFW 326 (1043)
Q Consensus 247 ~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LW 326 (1043)
.|.........+..++...... .+|..... .........|+++.++..|++++...|....+|
T Consensus 244 ---------~~p~~~~~~~A~~~L~~~~~~~------~dp~~~~~--~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~ 306 (1157)
T PRK11447 244 ---------VFSDGDSVAAARSQLAEQQKQL------ADPAFRAR--AQGLAAVDSGQGGKAIPELQQAVRANPKDSEAL 306 (1157)
T ss_pred ---------HCCCchHHHHHHHHHHHHHHhc------cCcchHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 0000000001111111111100 01111110 112222235566666666666666666666666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcccch------------HHH--HHHHHHHHhCCHHHHHHHHHhhhhCCChhh
Q 001619 327 MRYVDFMESKGGREIASYALDRATQIFLKRLPV------------IHL--FNARYKEQIGDTSAARAAFPESYIDSDSRF 392 (1043)
Q Consensus 327 l~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~------------iwl--~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~ 392 (1043)
..++..+...|++++|+..|++|++. .++.+. .|+ ..+....+.|++++|+..|++++.. .|..
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~-~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~ 384 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALAL-DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTD 384 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 66666666666666666666666654 222211 111 1233444556666666666666643 3333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH-----------------------------
Q 001619 393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT----------------------------- 443 (1043)
Q Consensus 393 ~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~----------------------------- 443 (1043)
...+...+.+....|++++|++.|+++++. .|.....+...+...
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRM------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555555666666666666666666654 333333332221110
Q ss_pred -----HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619 444 -----YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 444 -----~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p 518 (1043)
+..........| ..+.|..+|++|+...|++ ..++..........|+.+.|..+++++++..|
T Consensus 459 l~~~~~~~~a~~~~~~g---~~~eA~~~~~~Al~~~P~~---------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 459 LQNDRLAQQAEALENQG---KWAQAAELQRQRLALDPGS---------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred hhhhHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 000111111223 3678999999999998886 12233333344567999999999999999888
Q ss_pred CCc
Q 001619 519 HTV 521 (1043)
Q Consensus 519 ~~~ 521 (1043)
...
T Consensus 527 ~~~ 529 (1157)
T PRK11447 527 NDP 529 (1157)
T ss_pred CCH
Confidence 654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=3.5e-14 Score=179.18 Aligned_cols=426 Identities=8% Similarity=-0.047 Sum_probs=254.1
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 001619 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWF 111 (1043)
Q Consensus 32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl 111 (1043)
.+|.-+..|+.++... ++.+++..+|++++...|.....|..++......+++++|..+|+++|...|.+++.|.
T Consensus 13 ~~~~~~~d~~~ia~~~-----g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWA-----GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445566666666532 45666667777777666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHH
Q 001619 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAG 191 (1043)
Q Consensus 112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~ 191 (1043)
.++..+... ++.+.|...+++++..-|. ... |..++......|+.+.|...|++++++.+.+....+. +...+.
T Consensus 88 ~la~~l~~~-g~~~eA~~~l~~~l~~~P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~-la~~l~ 161 (765)
T PRK10049 88 GLILTLADA-GQYDEALVKAKQLVSGAPD---KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE-YVQALR 161 (765)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Confidence 776666666 6677777777777766554 334 6666666666677777777777777654443222221 111111
Q ss_pred H---HHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 192 A---WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1043)
Q Consensus 192 ~---~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~ 268 (1043)
. .+.++. .+. .+.. ..+....+. + ......++..+.........|. ....++.
T Consensus 162 ~~~~~e~Al~--------~l~-~~~~--------~p~~~~~l~-~---~~~~~~~r~~~~~~~~~~~r~~---~ad~Al~ 217 (765)
T PRK10049 162 NNRLSAPALG--------AID-DANL--------TPAEKRDLE-A---DAAAELVRLSFMPTRSEKERYA---IADRALA 217 (765)
T ss_pred HCCChHHHHH--------HHH-hCCC--------CHHHHHHHH-H---HHHHHHHHhhcccccChhHHHH---HHHHHHH
Confidence 0 000110 000 0000 000000000 0 0000000000000000000010 1123344
Q ss_pred HHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYA 345 (1043)
Q Consensus 269 ~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~i 345 (1043)
.|+.++... .......+.....+..++..+...|+++.|+..|++++... |.+..+|+ +..+...|+.++|..+
T Consensus 218 ~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 218 QYDALEALW-HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHhhc-ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHH
Confidence 555555321 01111123333444443333345689999999999999864 66677885 7777888999999999
Q ss_pred HHHHHHHHhccc----chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC--------------hhhHHHHHHHHHHHHHcC
Q 001619 346 LDRATQIFLKRL----PVIHLFNARYKEQIGDTSAARAAFPESYIDSD--------------SRFIEKVTFKANMERRLG 407 (1043)
Q Consensus 346 lerA~~~~~~~~----p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~--------------~~~~~lw~~~a~lE~~~G 407 (1043)
|++++.. .+.. ...+...+....+.|++++|..++.++....+ .....++...+.+....|
T Consensus 295 l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 295 LTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 9998865 3322 13344445556889999999999999886421 123456677888888899
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHH
Q 001619 408 NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 487 (1043)
Q Consensus 408 ~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~ 487 (1043)
++++|+++|++++.. .|..+.+++..|. .....|. .+.|..++++|+...|++ .
T Consensus 374 ~~~eA~~~l~~al~~------~P~n~~l~~~lA~--------l~~~~g~---~~~A~~~l~~al~l~Pd~---------~ 427 (765)
T PRK10049 374 DLPQAEMRARELAYN------APGNQGLRIDYAS--------VLQARGW---PRAAENELKKAEVLEPRN---------I 427 (765)
T ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHH--------HHHhcCC---HHHHHHHHHHHHhhCCCC---------h
Confidence 999999999999997 6777776655433 3333444 568999999999999987 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 488 ~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.+...........|+.+.|.+++.++++..|.+..
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 22333333445679999999999999999998654
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=1.3e-14 Score=179.60 Aligned_cols=314 Identities=13% Similarity=0.026 Sum_probs=197.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~ 103 (1043)
..|+..+..+|.+.+.+..++...... ++.+.+..+|++++...|.+...|...+......|++++|...|++|+...
T Consensus 63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~--g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 63 TLLSDRVLTAKNGRDLLRRWVISPLAS--SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HHhHHHHHhCCCchhHHHHHhhhHhhc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555555555555555554433333 555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCccHHHH
Q 001619 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSKKLHHY 182 (1043)
Q Consensus 104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~~l~~~ 182 (1043)
|.++.+|...+..+... ++.+.|..+|++++...|. +...|...+. ....|+++.|..+|++++.. |... ...
T Consensus 141 P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~-~~~ 214 (656)
T PRK15174 141 SGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLARALLPFFALER-QES 214 (656)
T ss_pred CCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcc-hhH
Confidence 55555555555555444 5555555555555544443 2223322222 23345555555555555442 1110 000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001619 183 YDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQ 262 (1043)
Q Consensus 183 ~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~ 262 (1043)
+. ... ..+.....
T Consensus 215 ~~----~l~---------------------------------------------------------------~~l~~~g~ 227 (656)
T PRK15174 215 AG----LAV---------------------------------------------------------------DTLCAVGK 227 (656)
T ss_pred HH----HHH---------------------------------------------------------------HHHHHCCC
Confidence 00 000 00000011
Q ss_pred HHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHhccCCCcHHHHHHHHHHHHHcCC
Q 001619 263 LDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDW----VVKLYERCLIPCADYPEFWMRYVDFMESKGG 338 (1043)
Q Consensus 263 ~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~----~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~ 338 (1043)
...+...|++++. .+|.+...|..++..+...|+++. +...|++|+...|+...+|..++..+...|+
T Consensus 228 ~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 228 YQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 1122334444443 357778888888888888888774 8999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 339 REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKE 418 (1043)
Q Consensus 339 ~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyek 418 (1043)
+++|...|++++.. .|+.+.++..++......|++++|+..|.+++.. .|.....+...+.+....|++++|++.|++
T Consensus 300 ~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 300 NEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999987 6778889999999999999999999999999864 344444455556677888999999999999
Q ss_pred HHHH
Q 001619 419 ALET 422 (1043)
Q Consensus 419 ale~ 422 (1043)
+++.
T Consensus 378 al~~ 381 (656)
T PRK15174 378 YIQA 381 (656)
T ss_pred HHHh
Confidence 9997
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=4.5e-14 Score=174.80 Aligned_cols=325 Identities=10% Similarity=-0.001 Sum_probs=252.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
++...+..+++..+...|.....+..++......|+++.|...|++++...|.+.+.|...+..+... ++.+.|...|+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~-g~~~~Ai~~l~ 134 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS-KQYATVADLAE 134 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 88999999999999999999999999998888899999999999999999999999999999998888 89999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i 212 (1043)
+|+..-|. ....|...+......|+++.|..+|++++...+.....+.. ...+.
T Consensus 135 ~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~---------------------- 188 (656)
T PRK15174 135 QAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFL---------------------- 188 (656)
T ss_pred HHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHH----------------------
Confidence 99998776 56789999999999999999999999887643332111110 00000
Q ss_pred hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh-HHHHH
Q 001619 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD-IQLKN 291 (1043)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p-~~~~~ 291 (1043)
.. +. ++++.. .++..+.. +| .....
T Consensus 189 ~~-----------------------g~-----------------~~eA~~------~~~~~l~~--------~~~~~~~~ 214 (656)
T PRK15174 189 NK-----------------------SR-----------------LPEDHD------LARALLPF--------FALERQES 214 (656)
T ss_pred Hc-----------------------CC-----------------HHHHHH------HHHHHHhc--------CCCcchhH
Confidence 00 00 111111 12222221 11 11122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHhcccchHHHHHHHH
Q 001619 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI----ASYALDRATQIFLKRLPVIHLFNARY 367 (1043)
Q Consensus 292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~----Ar~ilerA~~~~~~~~p~iwl~~A~~ 367 (1043)
+...+..+...|+++.+...|++++...|....+|..++..+...|++++ |...|++|+.. .|+.+.+|..++.+
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~ 293 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 23334455568999999999999999999999999999999999999885 89999999987 77888999999999
Q ss_pred HHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Q 001619 368 KEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTEL 447 (1043)
Q Consensus 368 E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~ 447 (1043)
....|++++|...|++++.. .|....++..++.+....|+++.|+..|+++++. .|..+.+++. .
T Consensus 294 l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~--------~ 358 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSKWNRY--------A 358 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHH--------H
Confidence 99999999999999999964 5666778888899999999999999999999986 4443322211 1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 448 IKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 448 ~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
.......|+ .+.|...|++++..+|+.
T Consensus 359 a~al~~~G~---~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 359 AAALLQAGK---TSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHhChhh
Confidence 122233454 568999999999988875
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=2e-13 Score=168.85 Aligned_cols=407 Identities=11% Similarity=0.087 Sum_probs=268.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 001619 76 WRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155 (1043)
Q Consensus 76 W~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe 155 (1043)
++..+....+.|++++|...|++||...|. ..+|...+...... ++.++|...|++||..-|. ....|.......
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNAL-GDWEKVVEDTTAALELDPD---YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence 455566667789999999999999999995 67888888777777 8999999999999997665 457888888888
Q ss_pred HHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHH-----HHHhhhhhhhh--hHHHHHHhhhccccccCccchhhhH
Q 001619 156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA-----WKEELECESDS--AMEFQSELVLEGEVPAYYKDDETSS 228 (1043)
Q Consensus 156 ~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~-----~~e~l~~~~~~--~~~~~~e~i~~~~l~~~~~~~e~~~ 228 (1043)
...|+++.|..-|..++.++..........+...+.. ..+.+...... ....+................
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 280 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL---- 280 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh----
Confidence 8889999999888877655433211111111111111 00001000000 000000000000000000000
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHH
Q 001619 229 VIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWV 308 (1043)
Q Consensus 229 ~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~ 308 (1043)
....+.......+. +........ .........+...|++++... ...|.....|..++.+....|+++.+
T Consensus 281 --~~~~~~~~~~~~~~-~~l~~~~~e--~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 281 --EDSNELDEETGNGQ-LQLGLKSPE--SKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred --hcccccccccccch-HHHHHHHHH--hhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 00000000000000 000000000 000112223345566666421 23577788899988888889999999
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC
Q 001619 309 VKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS 388 (1043)
Q Consensus 309 ~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~ 388 (1043)
+..|++++...|.....|+.++..+...|++++|...|++++.. .++.+.+|...+.+....|++++|+..|++++..
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l- 428 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL- 428 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99999999999999999999999999999999999999999987 7788899999999999999999999999999964
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 001619 389 DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVIS 468 (1043)
Q Consensus 389 ~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~e 468 (1043)
.|+....|...+.+..+.|++++|..+|++++.. +|..+.+|..++. .....|. .+.|...|+
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~--------~~~~~g~---~~~A~~~~~ 491 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYYGE--------LLLDQNK---FDEAIEKFD 491 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHHHH--------HHHHccC---HHHHHHHHH
Confidence 5667788999999999999999999999999997 6666766644432 2222343 678999999
Q ss_pred HHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 469 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 469 rAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
+|+..+|+..... . ....++...+.+.+..|+.+.|..++.++++.-|....
T Consensus 492 ~Al~l~p~~~~~~-~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 492 TAIELEKETKPMY-M-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred HHHhcCCcccccc-c-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 9999887642111 0 01111222222333459999999999999999876543
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=1.4e-12 Score=164.75 Aligned_cols=392 Identities=10% Similarity=-0.019 Sum_probs=273.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~ 103 (1043)
..+.+.+..+|.+...|..++..+... ++..++..+|+++|+..|.+...|..++......|++++|..++++++...
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456666667899999999999888877 899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHH---------HhcC
Q 001619 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQ---------TLRF 174 (1043)
Q Consensus 104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~r---------aL~~ 174 (1043)
|.+.. |..++..+... ++.+.|..+|++|++.-|. ...+|..++......+..+.|.+.+++ .+..
T Consensus 114 P~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~ 188 (765)
T PRK10049 114 PDKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEA 188 (765)
T ss_pred CCCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999 99999888877 8999999999999998886 567888888888777777767766662 2211
Q ss_pred -CCccHHH-HHH----HHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619 175 -PSKKLHH-YYD----SFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK 248 (1043)
Q Consensus 175 -p~~~l~~-~~~----~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~ 248 (1043)
+....-. ... ....+ ...++++. .+..++..-. ...+ ....+.+++....
T Consensus 189 ~~~~~~~r~~~~~~~~~~~r~-~~ad~Al~--------~~~~ll~~~~-----~~p~----------~~~~~~~a~~d~l 244 (765)
T PRK10049 189 DAAAELVRLSFMPTRSEKERY-AIADRALA--------QYDALEALWH-----DNPD----------ATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHHhhcccccChhHHH-HHHHHHHH--------HHHHHHhhcc-----cCCc----------cchHHHHHHHHHH
Confidence 1000000 000 00000 00011111 0000000000 0000 0000111110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc----HH
Q 001619 249 YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PE 324 (1043)
Q Consensus 249 ~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~----~~ 324 (1043)
...+ .......++..|+++++.. ...|.....|. +..+...|++++|+.+|++++...+.. ..
T Consensus 245 -----~~Ll-~~g~~~eA~~~~~~ll~~~-----~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 245 -----GALL-ARDRYKDVISEYQRLKAEG-----QIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred -----HHHH-HhhhHHHHHHHHHHhhccC-----CCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 0001 1123334555677766431 12467777885 556666899999999999998765543 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhc------------c--cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh
Q 001619 325 FWMRYVDFMESKGGREIASYALDRATQIFLK------------R--LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS 390 (1043)
Q Consensus 325 LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~------------~--~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~ 390 (1043)
.+..++..+...|++++|..+|+++.....+ + ...++...+.+....|++++|+++|++++.. .|
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-AP 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 6777777778889999999999999876211 1 1235667888999999999999999999864 56
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 001619 391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNA 470 (1043)
Q Consensus 391 ~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erA 470 (1043)
....+|...+.+....|++++|.++|+++++. .|..+.+++..+. .....|. .+.|..+++++
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------~Pd~~~l~~~~a~--------~al~~~~---~~~A~~~~~~l 453 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVL------EPRNINLEVEQAW--------TALDLQE---WRQMDVLTDDV 453 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChHHHHHHHH--------HHHHhCC---HHHHHHHHHHH
Confidence 67889999999999999999999999999998 6766665543322 1122233 67899999999
Q ss_pred hhcCCCc
Q 001619 471 LYSRPDV 477 (1043)
Q Consensus 471 l~~~p~~ 477 (1043)
+...|++
T Consensus 454 l~~~Pd~ 460 (765)
T PRK10049 454 VAREPQD 460 (765)
T ss_pred HHhCCCC
Confidence 9999987
No 28
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.62 E-value=6e-12 Score=141.09 Aligned_cols=131 Identities=16% Similarity=0.291 Sum_probs=111.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc--------C-----------CCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENS--------C-----------PDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~--------~-----------~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~ 84 (1043)
..||..|.+--.+...+++||.. |.. + -.-..++-.+|++|+..|+..+++|..|+.+..
T Consensus 38 r~fE~kL~rr~~~i~Dfi~YI~Y-E~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k 116 (568)
T KOG2396|consen 38 RDFELKLQRRTLSIEDFINYIQY-EINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK 116 (568)
T ss_pred HHHHHHHccCcccHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 35777788888888888888774 321 0 011245678999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Q 001619 85 RLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQ 158 (1043)
Q Consensus 85 ~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~ 158 (1043)
+.+.+.++.++|..+|..+|++++||+.-|.++.+...+++.||.+|-|+|+..|. ++.||..|.++|...
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd---sp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD---SPKLWKEYFRMELMY 187 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999988756799999999999998876 789999999999865
No 29
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.62 E-value=3.6e-13 Score=148.01 Aligned_cols=392 Identities=14% Similarity=0.157 Sum_probs=244.4
Q ss_pred CCCccHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HH
Q 001619 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLS-EIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS------ID 90 (1043)
Q Consensus 18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~-~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~------~e 90 (1043)
+.+...+.|++...-+|+-..+|.-|+. ++.. .++..+..+|-|+|..- +++++|.-|++.-.+..+ .-
T Consensus 57 s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~---~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~ 132 (660)
T COG5107 57 SMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR---KDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRF 132 (660)
T ss_pred hHHHHHHHHHHhcCCCccccHHHHHHhcchhhh---hhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhh
Confidence 3455677889999999999999999987 2333 58899999999999886 679999999998765431 12
Q ss_pred HHHHHHHHHHH---hcCCCHHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 001619 91 KVVEVFERAVQ---SATYSVDVWFHYCSLSMSTF--------EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ 159 (1043)
Q Consensus 91 ~a~~lfeRAL~---~~P~s~~LWl~Y~~~~~~~~--------~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~ 159 (1043)
...++|+=.+. +.|.+..+|-.|+.|+.... ..++.+|+.|.|||. .|++- -..+|..|-.||.+..
T Consensus 133 ~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~n-leklW~dy~~fE~e~N 210 (660)
T COG5107 133 KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGN-LEKLWKDYENFELELN 210 (660)
T ss_pred hhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-Ccccc-HHHHHHHHHHHHHHHH
Confidence 33444444333 35899999999999975431 247889999999986 56653 3689999999998764
Q ss_pred hhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCch-
Q 001619 160 RWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSV- 238 (1043)
Q Consensus 160 ~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~- 238 (1043)
.. +||++.-.. .| -.-.....|.++..-.. .+........+.... + ..+.+-.|...-+|....+
T Consensus 211 ~~-TarKfvge~--sp--~ym~ar~~yqe~~nlt~-Gl~v~~~~~~Rt~nK-~-------~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 211 KI-TARKFVGET--SP--IYMSARQRYQEIQNLTR-GLSVKNPINLRTANK-A-------ARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HH-HHHHHhccc--CH--HHHHHHHHHHHHHHHhc-cccccCchhhhhhcc-c-------cccccchhhhHhhHhhcCCc
Confidence 33 233332111 11 01112223333332210 000000000000000 0 0011112332223321111
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001619 239 ----DLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYER 314 (1043)
Q Consensus 239 ----~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyer 314 (1043)
+....| --..|+.+|. -.+...++|..|-.+....++..+|..+-+|
T Consensus 277 ~L~~~~~~qR---------------------i~y~~~q~~~--------y~~~~~evw~dys~Y~~~isd~q~al~tv~r 327 (660)
T COG5107 277 KLGGRPHEQR---------------------IHYIHNQILD--------YFYYAEEVWFDYSEYLIGISDKQKALKTVER 327 (660)
T ss_pred ccCCCcHHHH---------------------HHHHHHHHHH--------HhhhhHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 100000 1113344442 1245678999999999888888999999999
Q ss_pred HhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-----------------------------cchHHHHHH
Q 001619 315 CLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-----------------------------LPVIHLFNA 365 (1043)
Q Consensus 315 Al~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-----------------------------~p~iwl~~A 365 (1043)
++..||. |-+.|+.+++..+|-+..+..|++++....+. ..-+||-+.
T Consensus 328 g~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~ 404 (660)
T COG5107 328 GIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHL 404 (660)
T ss_pred cccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHH
Confidence 9877665 78888999998888888889888887743210 114677788
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCC----------------------------------hhhHHHHHHHHHHHHHcCCHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSD----------------------------------SRFIEKVTFKANMERRLGNFVA 411 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~----------------------------------~~~~~lw~~~a~lE~~~G~~e~ 411 (1043)
..-.|...++.||++|.++.+... ++..-+..+|..|..+.++-+.
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHH
Confidence 888888899999999998876431 1222234456666667777777
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC
Q 001619 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPD 476 (1043)
Q Consensus 412 Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~ 476 (1043)
||++|+++++..-.+ -+..+|..|+.+|.++|+ +..+-++=+|.....|.
T Consensus 485 araLFetsv~r~~~~------------q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 485 ARALFETSVERLEKT------------QLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhHHHHHHh------------hhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcCc
Confidence 777777777653211 134567889999999998 44566666666665554
No 30
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.62 E-value=2.4e-15 Score=166.86 Aligned_cols=133 Identities=22% Similarity=0.386 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL-CSIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1043)
Q Consensus 39 ~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~-~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~ 117 (1043)
.|+.|++++++. +.++.+|.||++|++..+.++.+|.+++.+|... ++.+.|++|||+||+.+|.++++|+.|++|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 699999999887 7899999999999988888999999999999985 5666799999999999999999999999999
Q ss_pred HhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619 118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 118 ~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~ 174 (1043)
+.. ++++.||.||+||+..++.+..+..||..|++||..+|+.+.+++|+.|+...
T Consensus 81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998 89999999999999999876545689999999999999999999999999764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=7.9e-15 Score=163.36 Aligned_cols=267 Identities=18% Similarity=0.113 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSA--TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY 151 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~--P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y 151 (1043)
+..+.++.+....|++++|..++++++... |.++++|..++.+.... ++.+.|+..|++.+..-+. +......+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~---~~~~~~~l 84 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKA---NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc---cccccccc
Confidence 444566666666777777777776665544 66777777777766665 6677777777776653222 23445555
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHH
Q 001619 152 IEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIK 231 (1043)
Q Consensus 152 i~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~ 231 (1043)
+.+ ...++++.+.+++.+++...... ..+..+......
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~~~--~~l~~~l~~~~~--------------------------------------- 122 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDGDP--RYLLSALQLYYR--------------------------------------- 122 (280)
T ss_dssp ------------------------------------H-HHH---------------------------------------
T ss_pred ccc-ccccccccccccccccccccccc--chhhHHHHHHHH---------------------------------------
Confidence 555 45566666666666554422110 000000000000
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 001619 232 DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKL 311 (1043)
Q Consensus 232 ~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~l 311 (1043)
...|+++..++... +... ..+.+...|..++.++.+.|+++.+..+
T Consensus 123 ----------------------~~~~~~~~~~l~~~---~~~~---------~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 123 ----------------------LGDYDEAEELLEKL---EELP---------AAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------TT-HHHHHHHHHHH---HH-T------------T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ----------------------HhHHHHHHHHHHHH---Hhcc---------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00011111111111 1000 1245678999999999999999999999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChh
Q 001619 312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR 391 (1043)
Q Consensus 312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~ 391 (1043)
|++||...|+...++..++.++...|+.++++.++.+.... .+..+.+|..++......|++++|...|+++++. .|+
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 99999999999999999999999999999999999888776 4678889999999999999999999999999964 566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 392 FIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 392 ~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
...+...|+++....|..++|..++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6778899999999999999999999999875
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.58 E-value=8e-12 Score=145.70 Aligned_cols=305 Identities=14% Similarity=0.102 Sum_probs=203.1
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhhhhh
Q 001619 84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY-LCHTMWDKYIEFEISQQRWS 162 (1043)
Q Consensus 84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~-~s~~IW~~yi~fe~~~~~~e 162 (1043)
...|++++|..+|++++...|.++.+|...+.++... +++++|..+|++++...+... ....+|..++......|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4557888888899999888888888888888887777 788888888888877432211 01245666666667778888
Q ss_pred hHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHH
Q 001619 163 SLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVR 242 (1043)
Q Consensus 163 ~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ 242 (1043)
.|.++|.+++......... +...... .
T Consensus 125 ~A~~~~~~~l~~~~~~~~~----~~~la~~-------------------~------------------------------ 151 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGA----LQQLLEI-------------------Y------------------------------ 151 (389)
T ss_pred HHHHHHHHHHcCCcchHHH----HHHHHHH-------------------H------------------------------
Confidence 8888888888753222110 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc
Q 001619 243 SKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY 322 (1043)
Q Consensus 243 ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~ 322 (1043)
.....|+++ +..|+..++.. ...........|..++..+...|+++.+..+|++++...+..
T Consensus 152 ---------~~~g~~~~A------~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 152 ---------QQEKDWQKA------IDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred ---------HHhchHHHH------HHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 000001111 11222222210 000011123355666777777899999999999999988999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Q 001619 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1043)
Q Consensus 323 ~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~l 402 (1043)
...|+.++..+...|++++|..+|+++........+.+|...+......|++++|...|++++.. .|+. .++...+.+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~~la~~ 291 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGA-DLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc-hHHHHHHHH
Confidence 99999999999999999999999999987622223456777788888999999999999999864 3433 345777888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH-H--hCC-CchHHHHHHHHHHHhhcCCCc
Q 001619 403 ERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM-V--HGG-RSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 403 E~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~-~--~g~-~~~leraR~l~erAl~~~p~~ 477 (1043)
..+.|+++.|+.+|+++++. +|....+. .++.... . .|. ...++.++..+++.+...|++
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~------~P~~~~~~---------~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRR------HPSLRGFH---------RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHh------CcCHHHHH---------HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 88899999999999999997 55433222 1111111 1 222 224566777888888777775
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=1.7e-11 Score=142.93 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=215.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhCCChHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS----VDVWFHYCSLSMSTFEDPNDVR 128 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s----~~LWl~Y~~~~~~~~~~~e~ar 128 (1043)
++.+.+...|+++++.+|.+..+|...+.+....|++++|..+|++++...+.. ...|..++...... ++++.|.
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHH
Confidence 788999999999999999999999999999999999999999999999863222 25677777777777 8999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHH-HHHHHHHHHhhhhhhhhhHHH
Q 001619 129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF-KKLAGAWKEELECESDSAMEF 207 (1043)
Q Consensus 129 ~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y-~~~~~~~~e~l~~~~~~~~~~ 207 (1043)
.+|++++..-+. ....|..++......|+++.|..+|.++++............+ ......
T Consensus 128 ~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~--------------- 189 (389)
T PRK11788 128 ELFLQLVDEGDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ--------------- 189 (389)
T ss_pred HHHHHHHcCCcc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---------------
Confidence 999999986544 5678888888888899999999999999875322211100000 000000
Q ss_pred HHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChH
Q 001619 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287 (1043)
Q Consensus 208 ~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~ 287 (1043)
+.+..+...+...|+++++ .+|.
T Consensus 190 -------------------------------------------------~~~~~~~~~A~~~~~~al~--------~~p~ 212 (389)
T PRK11788 190 -------------------------------------------------ALARGDLDAARALLKKALA--------ADPQ 212 (389)
T ss_pred -------------------------------------------------HHhCCCHHHHHHHHHHHHh--------HCcC
Confidence 0000011112223333433 2355
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY-PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~-~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~ 366 (1043)
....|..++..+...|+++++..+|++++...|.. ..+|...+..+...|++++|...|++++.. .++.+ ++...+.
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~-~~~~la~ 290 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGAD-LLLALAQ 290 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCch-HHHHHHH
Confidence 66788888888888999999999999999876655 567888899999999999999999999987 45554 5588899
Q ss_pred HHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Q 001619 367 YKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER---RLGNFVAACDTYKEALETAA 424 (1043)
Q Consensus 367 ~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~---~~G~~e~Ar~lyekale~~~ 424 (1043)
+..+.|++++|+.+|++++.. .|+...+. .++.... ..|+.+++..++++.++..+
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRR-HPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 999999999999999999864 44443332 2222222 25688899999998887654
No 34
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.50 E-value=3.4e-13 Score=149.66 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~ 369 (1043)
+|..|+.|.++.++.+.+|.+|++|+........+|+.+|.++.. .++.+.|++||++|++. .+..+.+|+.|++|+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 799999999999999999999999997766678999999999888 45677799999999998 5567889999999999
Q ss_pred HhCCHHHHHHHHHhhhhCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 370 QIGDTSAARAAFPESYIDSDSR--FIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 370 ~~g~~d~Ar~ll~ral~~~~~~--~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
..|+++.||.+|++++...... ...+|.+|++||.+.|+++.++++++++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999754333 3469999999999999999999999999997
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.8e-10 Score=137.22 Aligned_cols=367 Identities=15% Similarity=0.089 Sum_probs=243.1
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
+-...+.++|+.+|....+|..+...++.. |++++....+-.|--.+|.+.++|+.++++-.+.|+++.|+-+|.||+
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345678999999999999999999988887 899998888888888999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC-C--CcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC---
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD-Y--LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF--- 174 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~-~--~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~--- 174 (1043)
...|..+++-..++.++.++ |+...|-..|.+++..+|.. + ....||...--|.+ .+..+.|.+++..++..
T Consensus 235 ~~~p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 235 QANPSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-HNERERAAKALEGALSKEKD 312 (895)
T ss_pred hcCCcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999888 89999999999999999821 1 02356654444443 34448888888888762
Q ss_pred --CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHH-------HHhhcCCchhhH-HHH
Q 001619 175 --PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSV-------IKDLLDPSVDLV-RSK 244 (1043)
Q Consensus 175 --p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~-------i~~~~~~~~~~e-~ar 244 (1043)
...++..+...|.... .++.++. .+........ -+|...+-+ ..-+.....+.. ..+
T Consensus 313 ~~~~ed~ni~ael~l~~~-q~d~~~~--------~i~~~~~r~~----e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNK-QSDKALM--------KIVDDRNRES----EKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred cccccHHHHHHHHHHHhH-HHHHhhH--------HHHHHhcccc----CCChhhhhhhhhccccccccccCCCCCCccch
Confidence 1122222222222211 1111111 1111100000 001000000 000000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcH
Q 001619 245 AIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYP 323 (1043)
Q Consensus 245 ~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~ 323 (1043)
.++-... ...-+..+....+..|- ... +. .....++++...++.+...|.+..|..+|..++.. +-...
T Consensus 380 v~rl~ic---L~~L~~~e~~e~ll~~l--~~~----n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 380 VIRLMIC---LVHLKERELLEALLHFL--VED----NV-WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred hHhHhhh---hhcccccchHHHHHHHH--HHh----cC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 0000000 00001111111111110 000 00 12356788999999999999999999999999974 34457
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC---------hhhHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD---------SRFIE 394 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~---------~~~~~ 394 (1043)
.+|...|..|...|..+.|...|++++.. .|++-++.+..+.+..+.|+.|+|.++++.... +. ..-.+
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~-~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIIN-PDGRNAEACAWEPERR 527 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC-CCccchhhccccHHHH
Confidence 89999999999999999999999999987 778888999999999999999999999988542 11 12345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 001619 395 KVTFKANMERRLGNFVAACDTY 416 (1043)
Q Consensus 395 lw~~~a~lE~~~G~~e~Ar~ly 416 (1043)
+-..++++....|..+.-..+-
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 6677788888888877644433
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=1.7e-13 Score=152.58 Aligned_cols=269 Identities=18% Similarity=0.215 Sum_probs=96.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF--PLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1043)
Q Consensus 32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~--P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L 109 (1043)
..|. +..++++..+-.. ++.+++..++++++... |.+..+|..++.+....++++.|+.+|++.+...+.++..
T Consensus 5 ~~~~--~~~l~~A~~~~~~--~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~ 80 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQR--GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444 4555666655555 78889999998777665 8899999999999888899999999999999998888888
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHH
Q 001619 110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKK 188 (1043)
Q Consensus 110 Wl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~ 188 (1043)
...++.+ ... +++++|.++++++.+..+ +..+|..++......++++.+..+++++...+.. .-...|..+-
T Consensus 81 ~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a- 153 (280)
T PF13429_consen 81 YERLIQL-LQD-GDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA- 153 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH-
T ss_pred ccccccc-ccc-cccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH-
Confidence 8888888 444 788889999888877553 4578888888888888999999999887643211 1011111000
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 189 LAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKIN 268 (1043)
Q Consensus 189 ~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~ 268 (1043)
.++.+.++...++.
T Consensus 154 ------------------------------------------------------------------~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 154 ------------------------------------------------------------------EIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------------------------------------------HHHHHCCHHHHHHH
T ss_pred ------------------------------------------------------------------HHHHHcCCHHHHHH
Confidence 01111122223344
Q ss_pred HHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001619 269 CFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDR 348 (1043)
Q Consensus 269 ~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~iler 348 (1043)
.|+++++ .+|.+..++..++-++...|+.++++.++++.....+..+.+|..++..+...|+.++|...|++
T Consensus 168 ~~~~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 168 DYRKALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 5566665 45888889988888888888999888888888877788888999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 349 ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 349 A~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
+++. .|+++.+...+|+.....|..++|..++.++..
T Consensus 240 ~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 ALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred cccc-ccccccccccccccccccccccccccccccccc
Confidence 9986 788888999999999999999999999988864
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.3e-10 Score=126.65 Aligned_cols=424 Identities=13% Similarity=0.057 Sum_probs=255.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
+.++.+.+.|..|+...|+-.-.+-..+-.....|+++++.+-.-+||++.|..+...+.-++-.... ++.+ ..+|+
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l-g~~~--eal~D 205 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL-GKFD--EALFD 205 (606)
T ss_pred ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh-ccHH--HHHHh
Confidence 67889999999999999997777777777777889999999999999999997777766666554433 4443 33555
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HH-hcCCCcc-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV-QT-LRFPSKK-LHHYYDSFKKLAGAWKEELECESDSAMEFQS 209 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~-ra-L~~p~~~-l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~ 209 (1043)
-.+.++-.+|....+-...-+.+...+ ...+.+.|. +. =.+|... +..++..|. ............++-+.+.
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~---~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFH---ADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhcc---ccccccccCCCccchhhHH
Confidence 555555444433333333333333222 122222222 11 1123221 111111111 1100000000000000000
Q ss_pred ---HhhhccccccCccchhhhH--HHHhhcC-------CchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc
Q 001619 210 ---ELVLEGEVPAYYKDDETSS--VIKDLLD-------PSVDLVRSKAIQKYRFIGEQIYKE-ASQLDEKINCFENLIRR 276 (1043)
Q Consensus 210 ---e~i~~~~l~~~~~~~e~~~--~i~~~~~-------~~~~~e~ar~i~~~~~~~~~~y~~-a~~~~~~~~~fE~~i~r 276 (1043)
+.+..+. ...|......+ ....+.. +...---|+++.- ..+|.= ..........|..+|.
T Consensus 282 ~~l~~l~~~~-~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~-----~gtF~fL~g~~~~a~~d~~~~I~- 354 (606)
T KOG0547|consen 282 EALEALEKGL-EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL-----RGTFHFLKGDSLGAQEDFDAAIK- 354 (606)
T ss_pred HHHHHHHhhC-chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH-----hhhhhhhcCCchhhhhhHHHHHh-
Confidence 0000000 00000000000 0000000 0000000111110 001100 0011122334444443
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc
Q 001619 277 PYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR 356 (1043)
Q Consensus 277 ~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~ 356 (1043)
++|....++++++..+....+.++-...|.+|...+|.++++++..+..+...++++.|..-|++|+.+ .|.
T Consensus 355 -------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe 426 (606)
T KOG0547|consen 355 -------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPE 426 (606)
T ss_pred -------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-Chh
Confidence 556667778888888877788899999999999999999999999999988899999999999999987 554
Q ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619 357 LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1043)
Q Consensus 357 ~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~ 436 (1043)
+.--++..+-.+.|.+.++.+...|+.+.+. .|.+.+++-.++.+..-.+.|+.|.+.|++||++..........+..+
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 4444555566678899999999999999864 577889999999999999999999999999999843322222234444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001619 437 VQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKL 516 (1043)
Q Consensus 437 ~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~ 516 (1043)
+..|...+. |. ..+.++..|+++|++..|.. +..+.....|+-..|+++.|..+++++...
T Consensus 506 V~Ka~l~~q-wk---------~d~~~a~~Ll~KA~e~Dpkc---------e~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 506 VHKALLVLQ-WK---------EDINQAENLLRKAIELDPKC---------EQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhHhhhc-hh---------hhHHHHHHHHHHHHccCchH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444443332 22 23778999999999998886 455667788888889999999999998877
Q ss_pred CC
Q 001619 517 FP 518 (1043)
Q Consensus 517 ~p 518 (1043)
-.
T Consensus 567 Ar 568 (606)
T KOG0547|consen 567 AR 568 (606)
T ss_pred HH
Confidence 43
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.45 E-value=1.4e-09 Score=139.39 Aligned_cols=414 Identities=12% Similarity=0.062 Sum_probs=265.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 001619 33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC--YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVW 110 (1043)
Q Consensus 33 nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s--~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LW 110 (1043)
.+.+...++.++..+-+. +.+..+..+|+.+.+..... .-++..++....+.|.+++|..+|+.... .+...|
T Consensus 366 ~~~~~~~~~~~y~~l~r~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRD--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHC--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHH
Confidence 355677777777766665 88999999999998875433 33444556666777889999988876654 367788
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHH-
Q 001619 111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKK- 188 (1043)
Q Consensus 111 l~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~- 188 (1043)
...++.+.+. ++++.|+++|++..+. |... +...|...+....+.|.++.|.++|++..+.... +.. .|.....
T Consensus 441 n~LL~a~~k~-g~~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv-TynaLI~g 516 (1060)
T PLN03218 441 NMLMSVCASS-QDIDGALRVLRLVQEA-GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-TFGALIDG 516 (1060)
T ss_pred HHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 8888887777 8999999999987763 4433 5678999999998999999999999998753111 221 2221111
Q ss_pred HH--HHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 189 LA--GAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK 266 (1043)
Q Consensus 189 ~~--~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~ 266 (1043)
+. +.++++ .+.+.++...+..+ +...+..+-.. |-+......+
T Consensus 517 y~k~G~~eeA--------l~lf~~M~~~Gv~P----D~vTYnsLI~a-----------------------~~k~G~~deA 561 (1060)
T PLN03218 517 CARAGQVAKA--------FGAYGIMRSKNVKP----DRVVFNALISA-----------------------CGQSGAVDRA 561 (1060)
T ss_pred HHHCcCHHHH--------HHHHHHHHHcCCCC----CHHHHHHHHHH-----------------------HHHCCCHHHH
Confidence 11 111111 11122221111100 11111111101 1111222223
Q ss_pred HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHcCChHHHHHH
Q 001619 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYA 345 (1043)
Q Consensus 267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~-~~~~~LWl~yAk~~e~~g~~e~Ar~i 345 (1043)
...|++..... ....| +...|...+..+-+.|++++|..+|++..... ......|...+..+-+.|++++|..+
T Consensus 562 ~~lf~eM~~~~----~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 562 FDVLAEMKAET----HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHhc----CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33333332110 01223 34578888888888999999999999998753 45668899999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 346 LDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 346 lerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
|++....-..-+...|...+....+.|++++|..+|..+.+........+|...++...+.|++++|+++|+++.+..
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-- 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-- 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 998876422222346667777788899999999999998864333335678888888888999999999999887641
Q ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc--CCCccccCChhhHHHHHHHHHHHHHHcCCH
Q 001619 426 QRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYS--RPDVLKVFSLEDVEDISSLYLQFLDLCGTI 503 (1043)
Q Consensus 426 ~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~--~p~~~~~l~~~~~~~l~~lwl~fee~~G~~ 503 (1043)
..|. .. .|..++....+.|. ++.|..+|++.... .|+. ..|...+......|.+
T Consensus 715 --~~Pd-vv--------tyN~LI~gy~k~G~---~eeAlelf~eM~~~Gi~Pd~----------~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 715 --LRPT-VS--------TMNALITALCEGNQ---LPKALEVLSEMKRLGLCPNT----------ITYSILLVASERKDDA 770 (1060)
T ss_pred --CCCC-HH--------HHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHCCCH
Confidence 1221 11 23333443334443 67888999887653 2332 3445555666678999
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 001619 504 HDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 504 ~~a~~~~~ra~k~~p~~~ 521 (1043)
+.|+.++.++.+.-...+
T Consensus 771 e~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999988654433
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.45 E-value=2.9e-10 Score=142.92 Aligned_cols=428 Identities=13% Similarity=0.017 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 001619 37 FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF--PLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFHY 113 (1043)
Q Consensus 37 ~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~--P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl~Y 113 (1043)
...|...|..+... +....+..+|+.+.... ..+...|..++....+.++++.++.++...+.. +..++.+|...
T Consensus 87 ~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34799998877766 88999999999988754 345677888888888889999999999988875 23367888888
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Q 001619 114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAW 193 (1043)
Q Consensus 114 ~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~ 193 (1043)
+.++.+. +.++.|+++|++... + +...|...+.-..+.|.++.|.++|++.+......-...|..........
T Consensus 165 i~~y~k~-g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHVKC-GMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHhcC-CCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 8888887 899999999997643 1 34579999988888999999999999997532211111111111111100
Q ss_pred HHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 001619 194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF--------IGEQIYKEASQLDE 265 (1043)
Q Consensus 194 ~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~--------~~~~~y~~a~~~~~ 265 (1043)
.. + ...+.+...+.+..+. .+......+-+.+-..+.++.|+.+++.+. ..-..|-+......
T Consensus 238 ~~-~-----~~~~~l~~~~~~~g~~---~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 238 GS-A-----RAGQQLHCCVLKTGVV---GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred Cc-H-----HHHHHHHHHHHHhCCC---ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 00 0 0011121111111110 011112222222333444444444433210 00011111222222
Q ss_pred HHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCChHHHHH
Q 001619 266 KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGREIASY 344 (1043)
Q Consensus 266 ~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~e~Ar~ 344 (1043)
+...|++..+.. ..|+ ...|...+..+.+.|.++.+..+|+.++.. ++....++..++..|.+.|++++|+.
T Consensus 309 A~~lf~~M~~~g------~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 309 ALCLYYEMRDSG------VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred HHHHHHHHHHcC------CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 223333222110 1111 223444444444455555555555555543 22333445555555555555555555
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 345 ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
+|++..+ + +...|-..+.-..++|++++|.++|++.... ..|+ ...|...+.--.+.|.+++|+.+|+.+.+..
T Consensus 382 vf~~m~~---~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 382 VFDRMPR---K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHhCCC---C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 5554321 1 2224444445555555555555555555432 1122 2233333333444455555555555555431
Q ss_pred HhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCH
Q 001619 424 AEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTI 503 (1043)
Q Consensus 424 ~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~ 503 (1043)
.. . |.. ..|...+....+.|. ++.|..+|+++- ..|+ ..+|...+.....+|+.
T Consensus 457 g~---~---p~~------~~y~~li~~l~r~G~---~~eA~~~~~~~~-~~p~----------~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 457 RI---K---PRA------MHYACMIELLGREGL---LDEAYAMIRRAP-FKPT----------VNMWAALLTACRIHKNL 510 (697)
T ss_pred CC---C---CCc------cchHhHHHHHHhcCC---HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCCc
Confidence 10 1 100 012333444444443 678888887642 1222 24577777777889999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 001619 504 HDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 504 ~~a~~~~~ra~k~~p~~ 520 (1043)
+.+..++++.++..|..
T Consensus 511 ~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 511 ELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999998877753
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=7.4e-11 Score=150.06 Aligned_cols=281 Identities=9% Similarity=-0.047 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001619 56 EMIGLVYDSFLAEFPL--CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR 133 (1043)
Q Consensus 56 ~~~r~vyeraL~~~P~--s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfer 133 (1043)
..+...+.+++...|. ....|..++..... +.+++|..+|.+++...|.+.. .+.++..+... ++.+.|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~-Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQV-EDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHC-CCHHHHHHHHHH
Confidence 3456677888888888 89999999988776 7888899999999999987643 44444444455 899999999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001619 134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVL 213 (1043)
Q Consensus 134 AL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~ 213 (1043)
++..-+. ...|..++......|+.+.|...|+++++..+......+. .... . .
T Consensus 535 a~~~~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~----La~~----l--------------~- 587 (987)
T PRK09782 535 ISLHDMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW----LHAQ----R--------------Y- 587 (987)
T ss_pred HhccCCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH----HHHH----H--------------H-
Confidence 8665332 3457777777788899999999999998764332111110 0000 0 0
Q ss_pred ccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHH
Q 001619 214 EGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWH 293 (1043)
Q Consensus 214 ~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~ 293 (1043)
..+ ....+...|++++. .+|+ ...|.
T Consensus 588 ----------------------~~G-----------------------r~~eAl~~~~~AL~--------l~P~-~~a~~ 613 (987)
T PRK09782 588 ----------------------IPG-----------------------QPELALNDLTRSLN--------IAPS-ANAYV 613 (987)
T ss_pred ----------------------hCC-----------------------CHHHHHHHHHHHHH--------hCCC-HHHHH
Confidence 000 01122333444553 4565 78899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1043)
Q Consensus 294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~ 373 (1043)
.++..+.+.|+++.++..|++|+...|+...+|..++..+...|+.++|+.+|++|++. .|+.+.+|...+......|+
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999987 77888999999999999999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+++|+..|++++. ..|....+-..+..++.+.++++++.+.|.+++..
T Consensus 693 ~~eA~~~l~~Al~-l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 693 MAATQHYARLVID-DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHHHh-cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999995 46777788889999999889999999999998885
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.42 E-value=4.2e-09 Score=135.13 Aligned_cols=388 Identities=12% Similarity=0.065 Sum_probs=250.1
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 25 GLEEFIAEGS--LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 25 ~le~~i~~nP--~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
.+++....+. .+.-.+..++..+... +.+..+..+|+.... | +...|...+....+.++++.|+.+|++..+.
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 3444444443 3333444566666665 778888888877764 4 5778889999888999999999999998886
Q ss_pred c-CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619 103 A-TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1043)
Q Consensus 103 ~-P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~ 181 (1043)
- ..++..|...+..+.+. ++++.|+++|++..+. +... +...|...+....+.|+++.|.++|.+........-..
T Consensus 467 Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3 44778899988888888 8999999999998763 3332 46789999999999999999999999986532111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhc-cccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 001619 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLE-GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEA 260 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~-~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a 260 (1043)
.|. ..+..+...- ....+.+.+.++... ..+. .+...+..+-+ .|-+.
T Consensus 544 TYn---sLI~a~~k~G--~~deA~~lf~eM~~~~~gi~---PD~vTynaLI~-----------------------ay~k~ 592 (1060)
T PLN03218 544 VFN---ALISACGQSG--AVDRAFDVLAEMKAETHPID---PDHITVGALMK-----------------------ACANA 592 (1060)
T ss_pred HHH---HHHHHHHHCC--CHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH-----------------------HHHHC
Confidence 222 2222111000 000111112222110 0000 01111111111 12222
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHcCCh
Q 001619 261 SQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-CADYPEFWMRYVDFMESKGGR 339 (1043)
Q Consensus 261 ~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~~~~LWl~yAk~~e~~g~~ 339 (1043)
.....++..|+...++. . +.+...|...+..+.+.|+++.|..+|++.... +.-....|..++..+.+.|++
T Consensus 593 G~ldeA~elf~~M~e~g------i-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYN------I-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred CCHHHHHHHHHHHHHcC------C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 23333344444444321 1 224568999999999999999999999999865 222356788889999999999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 340 EIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 340 e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka 419 (1043)
++|..+|+++.+.-.+-...+|...+....+.|++++|.++|+.............|-..+....+.|++++|.++|+++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988753333456788888888999999999999998864322223567888888888999999999999998
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619 420 LETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSR 474 (1043)
Q Consensus 420 le~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~ 474 (1043)
.... ..|. .. .|..++.-..+.|. ++.|+.+|+.++...
T Consensus 746 ~~~G----i~Pd-~~--------Ty~sLL~a~~k~G~---le~A~~l~~~M~k~G 784 (1060)
T PLN03218 746 KRLG----LCPN-TI--------TYSILLVASERKDD---ADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHcC----CCCC-HH--------HHHHHHHHHHHCCC---HHHHHHHHHHHHHcC
Confidence 7642 1221 11 12222222223343 677888888887643
No 42
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.9e-10 Score=133.15 Aligned_cols=375 Identities=11% Similarity=0.131 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh--CCChHHHHHHHHH
Q 001619 56 EMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST--FEDPNDVRRLFKR 133 (1043)
Q Consensus 56 ~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~--~~~~e~ar~lfer 133 (1043)
+.....++.-+..+++++..-..||.+..+.|++++.+..=..+.+..|.++-||+.|+.-+... .++.+.+..+|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 33444566667777888888788888888999999999999999999999999999999876543 2567778999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHh-------hhhhhHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001619 134 ALSFVGKDYLCHTMWDKYIEFEISQ-------QRWSSLAQIFVQTLRFPS---KKLHHYYDSFKKLAGAWKEELECESDS 203 (1043)
Q Consensus 134 AL~~lp~~~~s~~IW~~yi~fe~~~-------~~~e~a~~iy~raL~~p~---~~l~~~~~~y~~~~~~~~e~l~~~~~~ 203 (1043)
||. ++.+..||..|+.|.... ++++..|.+|.|+|..-. ..-..+|..|.+|...+-....
T Consensus 176 al~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~----- 246 (881)
T KOG0128|consen 176 ALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE----- 246 (881)
T ss_pred Hhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH-----
Confidence 875 455789999999998764 457889999999986311 1223444445454443211000
Q ss_pred hHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001619 204 AMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKP 283 (1043)
Q Consensus 204 ~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~ 283 (1043)
-+.+..+..+. +...+ +....
T Consensus 247 -~~qv~a~~~~e-l~~~~----------------------------------------D~~~~----------------- 267 (881)
T KOG0128|consen 247 -QRQVIALFVRE-LKQPL----------------------------------------DEDTR----------------- 267 (881)
T ss_pred -HHHHHHHHHHH-Hhccc----------------------------------------hhhhh-----------------
Confidence 00010000000 00000 00000
Q ss_pred CChHHHHHHH--HHHHHHHH-----cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc
Q 001619 284 LDDIQLKNWH--DYLSFAEK-----QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR 356 (1043)
Q Consensus 284 ~~p~~~~~W~--~yi~~e~~-----~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~ 356 (1043)
-..+..|. -+++-+.. ..+....+..|++-+...+.....|+.|++|+-..|+.-....+++|++.- +..
T Consensus 268 --~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~ 344 (881)
T KOG0128|consen 268 --GWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVL 344 (881)
T ss_pred --HHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccc
Confidence 01111111 11111110 112334556777777777777889999999999999998888999999876 334
Q ss_pred cchHHHHHHHHHH-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHH
Q 001619 357 LPVIHLFNARYKE-QIGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1043)
Q Consensus 357 ~p~iwl~~A~~E~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a-~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~ 434 (1043)
.++.|+.|.-+.- .++-...+..++-+++.. +|-...+|.+|. .|||...........+++++...+ .
T Consensus 345 ~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---------~ 414 (881)
T KOG0128|consen 345 DRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV---------E 414 (881)
T ss_pred cHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---------H
Confidence 5789999876653 355556677788888754 566678899885 333333334444555566665421 1
Q ss_pred HHHHHHH------------------HHH----------------------HHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619 435 LYVQFSR------------------LTY----------------------TELIKFTMVHGGRSHISIVDAVISNALYSR 474 (1043)
Q Consensus 435 l~~~~ar------------------~~~----------------------~~~~~fe~~~g~~~~leraR~l~erAl~~~ 474 (1043)
++..|+. ..| ..|+.+|...++ +++.+|-|-...+...
T Consensus 415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imty~ 492 (881)
T KOG0128|consen 415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMTYG 492 (881)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhccccCC
Confidence 2222210 001 234444444332 2344555444333210
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619 475 PDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 475 p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~ 521 (1043)
.....-.|.-|+.+|+.+|+..++++++.+|+-.+-...
T Consensus 493 --------~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 493 --------GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred --------cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 011222566677777889999999999999888776553
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.41 E-value=9.4e-09 Score=128.61 Aligned_cols=437 Identities=11% Similarity=0.018 Sum_probs=262.3
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
.-++.|+++++.+|.+......++..+-.. +..+++..++++++...|..+..-...+......|++++|..+|++++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788899999999832222333333333 678888999999995556666666666777788889999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHH
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~ 180 (1043)
+..|.+++++...+...... +..++|...+++++..-|.. ......+.+....++...+..+|++++...+.+..
T Consensus 130 ~~dP~n~~~l~gLa~~y~~~-~q~~eAl~~l~~l~~~dp~~----~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 130 KKDPTNPDLISGMIMTQADA-GRGGVVLKQATELAERDPTV----QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred hhCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhcccCcch----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 99999999998776666666 78888888888888776652 22233333333344554588899999876555444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHH-HH--HHHHHH
Q 001619 181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKY-RF--IGEQIY 257 (1043)
Q Consensus 181 ~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~-~~--~~~~~y 257 (1043)
.+...+...... . . .....+++... +..+++.+...+ +. ...|..|.-- .. -....|
T Consensus 205 ~~~~~~~~l~~~-~--------~-~~~a~~l~~~~--p~~f~~~~~~~l-----~~---~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 205 VLKNHLEILQRN-R--------I-VEPALRLAKEN--PNLVSAEHYRQL-----ER---DAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHc-C--------C-cHHHHHHHHhC--ccccCHHHHHHH-----HH---HHHHHHHhhcccccccchhhH
Confidence 333333222111 0 0 00000111110 012222221110 00 0000000000 00 000112
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCChHH----HHHHHHHHHHHHHcCChHHHHHHHHHHhcc---CCCcHHHHHHHH
Q 001619 258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQ----LKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CADYPEFWMRYV 330 (1043)
Q Consensus 258 ~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~----~~~W~~yi~~e~~~g~~e~~~~lyerAl~~---~~~~~~LWl~yA 330 (1043)
. .....+..++..+.+.- ..|.. ..+-.+++-.+...+.+..|+..|+..-.. .|.+..-|+ |
T Consensus 265 ~---~~d~ala~~~~l~~~~~-----~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~--a 334 (822)
T PRK14574 265 D---IADKALADYQNLLTRWG-----KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA--A 334 (822)
T ss_pred H---HHHHHHHHHHHHHhhcc-----CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH--H
Confidence 1 33344555555554210 12322 233445555566678899999999988743 477766665 4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhc---ccch----HHHHHHHHHHHhCCHHHHHHHHHhhhhCC--------------C
Q 001619 331 DFMESKGGREIASYALDRATQIFLK---RLPV----IHLFNARYKEQIGDTSAARAAFPESYIDS--------------D 389 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~ilerA~~~~~~---~~p~----iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--------------~ 389 (1043)
..|...+..++|..+|..++....+ .... .-+.||.+ ..+++++|+.++++..+.. .
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l--d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN--ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH--hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 5555678899999999988764211 1111 23455544 4899999999999987622 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 001619 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISN 469 (1043)
Q Consensus 390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~er 469 (1043)
++........+......|++..|.+++++.+.. .|+++.+++.+ +..+...|. ..+|+.+++.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------aP~n~~l~~~~--------A~v~~~Rg~---p~~A~~~~k~ 475 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------APANQNLRIAL--------ASIYLARDL---PRKAEQELKA 475 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH--------HHHHHhcCC---HHHHHHHHHH
Confidence 334444444566566679999999999999887 77778777544 444455555 4579999999
Q ss_pred HhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 470 ALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 470 Al~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
++...|++ . .+.-.....-...|+.+.|.++....+..+|....
T Consensus 476 a~~l~P~~--------~-~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 476 VESLAPRS--------L-ILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HhhhCCcc--------H-HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88877775 1 11111111123459999999999999999997553
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=2e-09 Score=137.10 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 001619 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKE 369 (1043)
Q Consensus 290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~ 369 (1043)
..|..++......|+++.+...|++++...|....++..++..+...|++++|...|++|+.. .|+ +..|...+.+..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~-~~a~~~LA~~l~ 620 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APS-ANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCC-HHHHHHHHHHHH
Confidence 457777777778899999999999999988888777776665556679999999999999987 555 788999999999
Q ss_pred HhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHH
Q 001619 370 QIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIK 449 (1043)
Q Consensus 370 ~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~ 449 (1043)
+.|++++|+..|++++. ..|+...++..++.+....|+++.|+.+|+++++. .|..+.+|.+.+..
T Consensus 621 ~lG~~deA~~~l~~AL~-l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~~~a~~nLA~a------- 686 (987)
T PRK09782 621 QRHNVPAAVSDLRAALE-LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDDPALIRQLAYV------- 686 (987)
T ss_pred HCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH-------
Confidence 99999999999999996 46667788888888888899999999999999997 67777666544321
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619 450 FTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 450 fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~ 521 (1043)
....|+ .+.|+..|++|+...|+. ..+...+.+.+....+.+.+.+.|.|+...=+++.
T Consensus 687 -l~~lGd---~~eA~~~l~~Al~l~P~~---------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 687 -NQRLDD---MAATQHYARLVIDDIDNQ---------ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred -HHHCCC---HHHHHHHHHHHHhcCCCC---------chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 223344 668999999999988876 24556777777777888888888888887766543
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.40 E-value=1.5e-09 Score=139.76 Aligned_cols=434 Identities=12% Similarity=0.074 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHH
Q 001619 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA-TYSVDVWFHYC 114 (1043)
Q Consensus 36 d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~-P~s~~LWl~Y~ 114 (1043)
|+..+..+|..+-+. ++++.++.+|+++... +.-.|..++....+.|.+++|..+|++.+..- .-+...+...+
T Consensus 221 ~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 221 DVDVVNALITMYVKC--GDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred ccchHhHHHHHHhcC--CCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 566677777777766 8888888888887543 34568888888888888999999998887752 22344444555
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHH-HHHHHHHHHH
Q 001619 115 SLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY-DSFKKLAGAW 193 (1043)
Q Consensus 115 ~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~-~~y~~~~~~~ 193 (1043)
..+... ++.+.+++++..+++. |... +..+|...+....+.|.++.|+++|++... |....|... ..|.. .+.+
T Consensus 296 ~a~~~~-g~~~~a~~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~-~g~~ 370 (857)
T PLN03077 296 SACELL-GDERLGREMHGYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEK-NGLP 370 (857)
T ss_pred HHHHhc-CChHHHHHHHHHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHh-CCCH
Confidence 554444 7888888888887764 4433 467888888888888999999999988643 211111111 11111 0111
Q ss_pred HHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHH------------HHHHHHHH
Q 001619 194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG------------EQIYKEAS 261 (1043)
Q Consensus 194 ~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~------------~~~y~~a~ 261 (1043)
++ +.+.+.++...+..+ +..-....+. ..-..+.++.++.++.+..-. -..|-+..
T Consensus 371 ~~--------A~~lf~~M~~~g~~P---d~~t~~~ll~-a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 371 DK--------ALETYALMEQDNVSP---DEITIASVLS-ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HH--------HHHHHHHHHHhCCCC---CceeHHHHHH-HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 11 111222222121111 1111111111 122334455555555432100 11233333
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHH
Q 001619 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1043)
Q Consensus 262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~ 341 (1043)
....++..|++... .+...|...+.-+..+|+.++|..+|++.+....-....+...+.-+.+.|+++.
T Consensus 439 ~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 439 CIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred CHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence 33444444443221 1345788888777778888888888888775322222333333333344444455
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 342 Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
++.++..+++.-......+.-...++..+.|+++.|+++|... . + ....|-..+.-..+.|..++|.++|+++++
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~--~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E--K-DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554444443211111122223334444455555555555443 1 1 122344444444444555555555554443
Q ss_pred HHHhhccCCccHHHHHHH--------H----------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 422 TAAEQRKFHTLPLLYVQF--------S----------------RLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 422 ~~~~~~~~p~~~~l~~~~--------a----------------r~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
.-. .+...++..+..-+ + ...|...+.+..+.|. ++.|..+|+..- ..|+
T Consensus 583 ~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~---~~eA~~~~~~m~-~~pd- 656 (857)
T PLN03077 583 SGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK---LTEAYNFINKMP-ITPD- 656 (857)
T ss_pred cCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHCC-CCCC-
Confidence 210 00000000000000 0 0112333444444443 678888888752 2233
Q ss_pred cccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 478 LKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 478 ~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
..+|...+...+.+|+.+.+..+.++.++.-|....
T Consensus 657 ---------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 657 ---------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 256888888888999999999999999998887554
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=1.8e-09 Score=126.92 Aligned_cols=320 Identities=12% Similarity=0.035 Sum_probs=233.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619 27 EEFIAEGSLDFDEWTSLLSEIE----------NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1043)
Q Consensus 27 e~~i~~nP~d~~~W~~~i~~le----------~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf 96 (1043)
-..+..-|..+..|..-=+.-+ ...+|+...+++...++.+..|...-.+...++.....|+++++...|
T Consensus 62 ~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l 141 (409)
T TIGR00540 62 LRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHL 141 (409)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445567888888865422100 112489999999999999999988888888888888889999999999
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 97 ERAVQSATYS-VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 97 eRAL~~~P~s-~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
+++++..|.+ +.+...++++.+.. ++.+.|+..+++.++.-|. +..++..+.......|+++.+.+++.+.++.-
T Consensus 142 ~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 142 EEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999998887 47888889998888 8999999999999998886 55788899999999999999999999988642
Q ss_pred CccHHHHH-HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 001619 176 SKKLHHYY-DSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE 254 (1043)
Q Consensus 176 ~~~l~~~~-~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~ 254 (1043)
..+-.... .....+.+.+.. .
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~---------------~------------------------------------------- 239 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDE---------------A------------------------------------------- 239 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---------------H-------------------------------------------
Confidence 11100000 000000000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHH----HHHHH
Q 001619 255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEF----WMRYV 330 (1043)
Q Consensus 255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~L----Wl~yA 330 (1043)
..++. ...++..... .....+++..+|..++..+...|+++.+..+++++++..|+...+ ...+.
T Consensus 240 -~~~~~------~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~ 308 (409)
T TIGR00540 240 -MADEG------IDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP 308 (409)
T ss_pred -HHhcC------HHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh
Confidence 00000 0011111110 000113477899999999999999999999999999988887753 33333
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhCCHHHHHHHHHh--hhhCCChhhHHHHHHHHHHHHHc
Q 001619 331 DFMESKGGREIASYALDRATQIFLKRLP--VIHLFNARYKEQIGDTSAARAAFPE--SYIDSDSRFIEKVTFKANMERRL 406 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p--~iwl~~A~~E~~~g~~d~Ar~ll~r--al~~~~~~~~~lw~~~a~lE~~~ 406 (1043)
.. ..++.+.++..++++++. .|+++ .+...++.+..+.|++++|++.|++ +++. .|+. ..+..++.+....
T Consensus 309 ~l--~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~-~~~~~La~ll~~~ 383 (409)
T TIGR00540 309 RL--KPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDA-NDLAMAADAFDQA 383 (409)
T ss_pred hc--CCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCH-HHHHHHHHHHHHc
Confidence 32 247789999999999987 77888 8888999999999999999999995 5543 3443 3466889999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 001619 407 GNFVAACDTYKEALETAA 424 (1043)
Q Consensus 407 G~~e~Ar~lyekale~~~ 424 (1043)
|+.++|+++|++++....
T Consensus 384 g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 384 GDKAEAAAMRQDSLGLML 401 (409)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999998754
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.4e-08 Score=122.16 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=227.6
Q ss_pred CCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 001619 16 NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC-----YGYWRKYADHKARLCSID 90 (1043)
Q Consensus 16 ~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s-----~~lW~~y~~~e~~~~~~e 90 (1043)
++++++.+..+-..+..+|.++-..+.-+...-.. +++..+..+|.++|..+|.+ +.+|+.+++ .++.+
T Consensus 143 ~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk--kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~ 216 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQSPDNILALLGKARIAYNK--KDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGMSE 216 (1018)
T ss_pred CccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccchh
Confidence 33477777788888888888887777765544333 67888888888888888875 355655554 34667
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHH
Q 001619 91 KVVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIF 168 (1043)
Q Consensus 91 ~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~--~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy 168 (1043)
.|+..|+|||..+|.++...+.++.+...+. ..+.++..++.+|...-+.++ .+-...+...-..|++..|..++
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP---~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENP---VALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCc---HHHHHHHHHHhhcccHHHHHHHH
Confidence 8888888888888888887777776655541 234556666666666555433 33334444444456777777777
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619 169 VQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQK 248 (1043)
Q Consensus 169 ~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~ 248 (1043)
.-+++.-....-..-..| +++ +.++..|.++.|...|-
T Consensus 294 ~~ai~~t~~~~~~aes~Y--~~g----------------------------------------Rs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFY--QLG----------------------------------------RSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHhhhhhHHHHHHHH--HHH----------------------------------------HHHHhhccHHHHHHHHH
Confidence 777653221111100001 000 00011111111111110
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcC----ChHHHHHH
Q 001619 249 -------------YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQG----DFDWVVKL 311 (1043)
Q Consensus 249 -------------~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g----~~e~~~~l 311 (1043)
+.. ..++|-+..++......||+.++ ..|++.+.-.-+..++...+ ..+++..+
T Consensus 332 ~s~k~~~d~~~l~~~G-lgQm~i~~~dle~s~~~fEkv~k--------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVG-LGQMYIKRGDLEESKFCFEKVLK--------QLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHccCCCCccccccc-hhHHHHHhchHHHHHHHHHHHHH--------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 000 12334444566667778888876 34777766666666654332 56889999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHL-FNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl-~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
..+++...+...+.|+..+..++. +|.-.+..+|.+|+..+.. ..|--|+ .-|-+..+.|+++.|+..|..|...
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 999999999999999999999775 5666778999999876543 2443444 4577888999999999999999764
Q ss_pred CC----h---hhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHH
Q 001619 388 SD----S---RFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1043)
Q Consensus 388 ~~----~---~~~~--lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~ 437 (1043)
.. + +.+. +-+..+.+.+.+++++.|-++|..+++. +|+....|+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke------hp~YId~yl 534 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE------HPGYIDAYL 534 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------CchhHHHHH
Confidence 21 1 1122 3455688899999999999999999997 666554443
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.33 E-value=4.4e-09 Score=132.33 Aligned_cols=418 Identities=11% Similarity=0.057 Sum_probs=259.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001619 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113 (1043)
Q Consensus 35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~-~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y 113 (1043)
-|...|..++..+.+. +.++.++.++..+.+. +.-+...|..++....+.|++++|+.+|++... .++..|...
T Consensus 121 ~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~l 195 (697)
T PLN03081 121 LPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTI 195 (697)
T ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHH
Confidence 4677888888877766 7888888999888764 233578899999999999999999999998754 366788888
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-c--H-HHHHHHHHHH
Q 001619 114 CSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-K--L-HHYYDSFKKL 189 (1043)
Q Consensus 114 ~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~--l-~~~~~~y~~~ 189 (1043)
+.-+.+. +.+++|.++|++.++. |... +...|...+......+..+.++.++..+++.... + . ......|.+
T Consensus 196 i~~~~~~-g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k- 271 (697)
T PLN03081 196 IGGLVDA-GNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK- 271 (697)
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH-
Confidence 8888877 8999999999998764 3322 2344445554444455555555555554432111 0 0 000111111
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHH-----HHH-------HHH
Q 001619 190 AGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF-----IGE-------QIY 257 (1043)
Q Consensus 190 ~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~-----~~~-------~~y 257 (1043)
.+.++++ ..+++.+... +...|..+-..+-..+..+.|..++..+. ... ..|
T Consensus 272 ~g~~~~A---------~~vf~~m~~~-------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 272 CGDIEDA---------RCVFDGMPEK-------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CCCHHHH---------HHHHHhCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 0001110 0111111000 00111111111112233333333332210 001 112
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC
Q 001619 258 KEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG 337 (1043)
Q Consensus 258 ~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g 337 (1043)
.+...+......++..++.. .+.+...+..+++.+.+.|+++.|..+|++.... ....|...+.-|-++|
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHG 405 (697)
T ss_pred HhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcC
Confidence 22223333444455554431 1234567888999999999999999999998753 4467999999999999
Q ss_pred ChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC--CChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619 338 GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID--SDSRFIEKVTFKANMERRLGNFVAACDT 415 (1043)
Q Consensus 338 ~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~--~~~~~~~lw~~~a~lE~~~G~~e~Ar~l 415 (1043)
+.++|..+|++....-..-+...+.....-..+.|.+++|+.+|+...+. ..|+ ...|...+++.-+.|.+++|.++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999876422222235566666678899999999999998752 2233 45677788899999999999999
Q ss_pred HHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHH
Q 001619 416 YKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQ 495 (1043)
Q Consensus 416 yekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~ 495 (1043)
|+++-- .|. ... |..++.--..+|+ ++.++.++++.+...|++. ..+.+-+.
T Consensus 485 ~~~~~~-------~p~-~~~--------~~~Ll~a~~~~g~---~~~a~~~~~~l~~~~p~~~---------~~y~~L~~ 536 (697)
T PLN03081 485 IRRAPF-------KPT-VNM--------WAALLTACRIHKN---LELGRLAAEKLYGMGPEKL---------NNYVVLLN 536 (697)
T ss_pred HHHCCC-------CCC-HHH--------HHHHHHHHHHcCC---cHHHHHHHHHHhCCCCCCC---------cchHHHHH
Confidence 875421 221 222 3444444445565 5689999999998877651 12333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 001619 496 FLDLCGTIHDIRNAWNQHIKL 516 (1043)
Q Consensus 496 fee~~G~~~~a~~~~~ra~k~ 516 (1043)
..-..|..+.|.+++.++.+.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHc
Confidence 445679999999999887655
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-08 Score=113.26 Aligned_cols=334 Identities=13% Similarity=0.157 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHH--HHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHH
Q 001619 34 SLDFDEWTSLLSE--IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ-SATYSVDVW 110 (1043)
Q Consensus 34 P~d~~~W~~~i~~--le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~-~~P~s~~LW 110 (1043)
-.+.+.|.-|+.= +.+. +.+..+...|...+...|.....|.++.++... .+.+. ++--.+. .+..+.+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~--~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~-~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKEL--GLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILS-ILVVGLPSDMHWMKKFF 232 (559)
T ss_pred cccchhHHHHHHHHHHHhh--chHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHH-HHHhcCcccchHHHHHH
Confidence 4456678877552 2333 678889999999999999988888877776532 22222 2211111 122233333
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 001619 111 FHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLA 190 (1043)
Q Consensus 111 l~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~ 190 (1043)
+.++--+. ...+.++.-+++-+. +|+.. +.-|=...+...-...+++.|..+|+..++..+..+... +.|..
T Consensus 233 ~~~a~~el---~q~~e~~~k~e~l~~-~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dm-dlySN-- 304 (559)
T KOG1155|consen 233 LKKAYQEL---HQHEEALQKKERLSS-VGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDM-DLYSN-- 304 (559)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHh-ccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhH-HHHhH--
Confidence 33332222 234555555554443 33322 233333333334456779999999999987544432221 01111
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhc-cccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 191 GAWKEELECESDSAMEFQSELVLE-GEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC 269 (1043)
Q Consensus 191 ~~~~e~l~~~~~~~~~~~~e~i~~-~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~ 269 (1043)
.+-.+..+ ..+.-+... ..+.... -|.-++|+.| |.-..+-..+..-
T Consensus 305 -----~LYv~~~~--skLs~LA~~v~~idKyR--~ETCCiIaNY-----------------------YSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 305 -----VLYVKNDK--SKLSYLAQNVSNIDKYR--PETCCIIANY-----------------------YSLRSEHEKAVMY 352 (559)
T ss_pred -----HHHHHhhh--HHHHHHHHHHHHhccCC--ccceeeehhH-----------------------HHHHHhHHHHHHH
Confidence 00000000 000000000 0000000 0111122211 2111122233344
Q ss_pred HHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001619 270 FENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRA 349 (1043)
Q Consensus 270 fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA 349 (1043)
|.++++ +||....+|.-..-=+...++...|+..|.+||..||.....|......|+..+-..-|.-.|.||
T Consensus 353 FkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 353 FKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 555554 789999999877665556788899999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 350 TQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 350 ~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
+.. .|+.+.+|.+.+++.++.+++++|.+.|++|+.. ....-..+...+++-+++++.++|...|++.++..
T Consensus 425 ~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 425 LEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred Hhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 976 7888999999999999999999999999999963 22223467778999999999999999999999954
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=3.1e-08 Score=118.54 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1043)
Q Consensus 38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~ 117 (1043)
..-+..++.+-.. |+++.+.+++..+++..|..+..|..++...+..|+.+++...+-.|-..+|.+.++|...+++.
T Consensus 140 ~~ll~eAN~lfar--g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFAR--GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3333444433333 89999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCC-ccHHHHHHH----HHHHHHH
Q 001619 118 MSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS-KKLHHYYDS----FKKLAGA 192 (1043)
Q Consensus 118 ~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~-~~l~~~~~~----y~~~~~~ 192 (1043)
... ++++.||-.|.||+...|... ++-..+..+..+.|...+|..-|.+++...+ .++....+. -..++..
T Consensus 218 ~~~-~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 218 EQL-GNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred Hhc-ccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 888 999999999999999999853 3444456677788999999999999987533 222111111 1111111
Q ss_pred HHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001619 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINC--- 269 (1043)
Q Consensus 193 ~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~--- 269 (1043)
.+. +.+.+.+...+..+.-.....+. .|+....+....|+++.........
T Consensus 294 ~~~------e~a~~~le~~~s~~~~~~~~ed~--------------------ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 294 NER------ERAAKALEGALSKEKDEASLEDL--------------------NILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred hHH------HHHHHHHHHHHhhccccccccHH--------------------HHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 000 11111222111111000000011 1111111222223322221111111
Q ss_pred ---------HHHHhcc--cCCCCCCCChHHHHHHHHHHHHH-HHcCChHHH-HH-HHHHHhccCCCcHHHHHHHHHHHHH
Q 001619 270 ---------FENLIRR--PYFHVKPLDDIQLKNWHDYLSFA-EKQGDFDWV-VK-LYERCLIPCADYPEFWMRYVDFMES 335 (1043)
Q Consensus 270 ---------fE~~i~r--~~~~~~~~~p~~~~~W~~yi~~e-~~~g~~e~~-~~-lyerAl~~~~~~~~LWl~yAk~~e~ 335 (1043)
.|..-.. .++.+...-+.+..+..-.+-+. .+.+...++ .. +-++.+ ......+|.+..|+.+..
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~al~~ 426 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADALTN 426 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHh
Confidence 0000000 00000001111222211111111 111222111 11 111111 235668999999999999
Q ss_pred cCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1043)
Q Consensus 336 ~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~l 415 (1043)
.|.+..|...|..++....-.+..+|..-|.++...|.++.|...|++++. ..|..+++-+..+.+....|+.++|.++
T Consensus 427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-LAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 999999999999998765556678999999999999999999999999996 4677788888999999999999999998
Q ss_pred HHHHH
Q 001619 416 YKEAL 420 (1043)
Q Consensus 416 yekal 420 (1043)
++..+
T Consensus 506 L~~~~ 510 (895)
T KOG2076|consen 506 LEQII 510 (895)
T ss_pred Hhccc
Confidence 87744
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.26 E-value=4.5e-08 Score=126.18 Aligned_cols=419 Identities=10% Similarity=0.028 Sum_probs=252.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHH
Q 001619 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAE--FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWF 111 (1043)
Q Consensus 35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~--~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl 111 (1043)
.|.-.|..+|..+-+. +..+++..+|++++.. .|+ .-.+...+....+.|+++.++.++..+++. +..++.+|.
T Consensus 251 ~d~~s~n~li~~~~~~--g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 RDCISWNAMISGYFEN--GECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCcchhHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 3677899999887776 8999999999999875 454 444566666667788999999999998876 344778888
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC---CCcc-HHHHHHHHH
Q 001619 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF---PSKK-LHHYYDSFK 187 (1043)
Q Consensus 112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~---p~~~-l~~~~~~y~ 187 (1043)
.++..+.+. ++++.|+++|++... . +...|...+.-..+.|.++.|.++|++.... |... +......+.
T Consensus 328 ~Li~~y~k~-g~~~~A~~vf~~m~~---~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 328 SLIQMYLSL-GSWGEAEKVFSRMET---K---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHhc-CCHHHHHHHHhhCCC---C---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 888888888 899999999987532 1 3457999998888899999999999987542 2221 111111111
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHH--------HHHHHHHHH
Q 001619 188 KLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYR--------FIGEQIYKE 259 (1043)
Q Consensus 188 ~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~--------~~~~~~y~~ 259 (1043)
. .+.++.+ ..+.+.+.+..+. .+......+-+.+-..+..+.|+.+++.+ ...-..|.+
T Consensus 401 ~-~g~~~~a---------~~l~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 401 C-LGDLDVG---------VKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred c-cchHHHH---------HHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 0 1111110 0111111111100 00111111112222333344444333311 000001111
Q ss_pred HHHHHHHHHHHHHH----------------------------------hcccCCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 001619 260 ASQLDEKINCFENL----------------------------------IRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDF 305 (1043)
Q Consensus 260 a~~~~~~~~~fE~~----------------------------------i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~ 305 (1043)
.....+++..|++. ++.-+ ..+......+++.+.+.|++
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~-------~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI-------GFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC-------CccceechHHHHHHHHcCCH
Confidence 11111222222222 21100 11222344667888888999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHhCCHHHHHHHHHhh
Q 001619 306 DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF-LKRLPVIHLFNARYKEQIGDTSAARAAFPES 384 (1043)
Q Consensus 306 e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~-~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ra 384 (1043)
+.|..+|+++ ......|...+.-+..+|+.++|..+|++....- .|+. ..+.....-..+.|.+++|+.+|+..
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999999886 4566789999999999999999999999877641 2222 23444445567789999999999988
Q ss_pred hhC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHH
Q 001619 385 YID--SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISI 462 (1043)
Q Consensus 385 l~~--~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ler 462 (1043)
... ..|+ ...|...+++..+.|.+++|.++++++- . .|. +..| ..++.--..+|+ ++.
T Consensus 616 ~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~------~pd-~~~~--------~aLl~ac~~~~~---~e~ 675 (857)
T PLN03077 616 EEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP-I------TPD-PAVW--------GALLNACRIHRH---VEL 675 (857)
T ss_pred HHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC-C------CCC-HHHH--------HHHHHHHHHcCC---hHH
Confidence 732 2333 5678888899999999999999988752 1 221 3333 333333334454 567
Q ss_pred HHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001619 463 VDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 517 (1043)
Q Consensus 463 aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~ 517 (1043)
++.+.+++++..|++. ..+.+.....-..|..+.|.++...+...-
T Consensus 676 ~e~~a~~l~~l~p~~~---------~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 676 GELAAQHIFELDPNSV---------GYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHHHHhhCCCCc---------chHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 7888888888888762 112222222245688888888887776553
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=5.1e-08 Score=114.25 Aligned_cols=316 Identities=11% Similarity=0.034 Sum_probs=218.7
Q ss_pred HHHHHhCCCCHHHHHHHHHH----------HHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619 27 EEFIAEGSLDFDEWTSLLSE----------IENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1043)
Q Consensus 27 e~~i~~nP~d~~~W~~~i~~----------le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf 96 (1043)
-..|..-|..+..|..-=+. +....+|+.+.+++...++-+..+...-.+...+......|+++.+...|
T Consensus 62 ~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l 141 (398)
T PRK10747 62 LRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHL 141 (398)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455668888888553111 00112378888887777666554333444455556657788999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 97 ERAVQSATYSV-DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 97 eRAL~~~P~s~-~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
++|.+..|... ...+.-+++.... ++.+.|..+++++++.-|. +.......+......|+++.+.+++.+..+.-
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99999888764 3333446666666 8999999999999988776 45666777777778899999999988887632
Q ss_pred CccHHHHHHHHH--HHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHH
Q 001619 176 SKKLHHYYDSFK--KLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253 (1043)
Q Consensus 176 ~~~l~~~~~~y~--~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~ 253 (1043)
..+-.. ...+. .++.... ....
T Consensus 218 ~~~~~~-~~~l~~~a~~~l~~---------------~~~~---------------------------------------- 241 (398)
T PRK10747 218 VGDEEH-RAMLEQQAWIGLMD---------------QAMA---------------------------------------- 241 (398)
T ss_pred CCCHHH-HHHHHHHHHHHHHH---------------HHHH----------------------------------------
Confidence 211110 00000 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 001619 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFM 333 (1043)
Q Consensus 254 ~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~ 333 (1043)
.. ....++...+. .....|.+..++..|+......|+.+.+..++++++. .+..+.+...|+...
T Consensus 242 ----~~------~~~~l~~~w~~----lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~ 306 (398)
T PRK10747 242 ----DQ------GSEGLKRWWKN----QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK 306 (398)
T ss_pred ----hc------CHHHHHHHHHh----CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc
Confidence 00 00000111100 0001255678999999999999999999999999999 455778888888864
Q ss_pred HHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 001619 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAAC 413 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar 413 (1043)
.++.+++...+++.++. .|+++.+++.++.+..+.|++++|++.|+++++. .|+ ...+..++.+.+..|+.++|.
T Consensus 307 --~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~-~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 307 --TNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPD-AYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred --CCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 38899999999998877 7788999999999999999999999999999964 454 345778889999999999999
Q ss_pred HHHHHHHHH
Q 001619 414 DTYKEALET 422 (1043)
Q Consensus 414 ~lyekale~ 422 (1043)
.+|++++..
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 999999986
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=5.4e-09 Score=111.00 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619 72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY 151 (1043)
Q Consensus 72 s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y 151 (1043)
....|...+......|++++|...|++++...|.+...|..++.+.... ++.+.|.+.|++++...|. ...+|..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~---~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPN---NGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC---CHHHHHHH
Confidence 3567777777777888899999999999988888888888888887777 8888899999988887664 34667777
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHH
Q 001619 152 IEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIK 231 (1043)
Q Consensus 152 i~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~ 231 (1043)
..+....|+++.+.+.|.+++..+..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------------------------------ 131 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLY------------------------------------------------------ 131 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccc------------------------------------------------------
Confidence 76666667777776666666543110
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 001619 232 DLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKL 311 (1043)
Q Consensus 232 ~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~l 311 (1043)
+.....|..++..+...|+++.+...
T Consensus 132 ------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 132 ------------------------------------------------------PQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 00111233334444457888888888
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 001619 312 YERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1043)
Q Consensus 312 yerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral 385 (1043)
|++++...+.....|..++..+...|+++.|...|++++.. .+..+..|...+.+....|+.+.|+.+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888876 45556666677777888888888887766654
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.20 E-value=2.2e-07 Score=116.51 Aligned_cols=405 Identities=8% Similarity=-0.037 Sum_probs=238.3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~ 101 (1043)
-+..+++++...|.....-..++..+... ++.+++..+|+++++.+|.+..++...+......+..++|...+++++.
T Consensus 87 A~~~~eka~~p~n~~~~~llalA~ly~~~--gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 87 VIDVYERYQSSMNISSRGLASAARAYRNE--KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 34556677733455555555445566665 8999999999999999999999999888888888999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHH
Q 001619 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1043)
Q Consensus 102 ~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~ 181 (1043)
..|..... +..+.+.... +...+|..+|+++++.-|. ...++..|...+.+.|....|.++..+.-..-+ ....
T Consensus 165 ~dp~~~~~-l~layL~~~~-~~~~~AL~~~ekll~~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~-~~~~ 238 (822)
T PRK14574 165 RDPTVQNY-MTLSYLNRAT-DRNYDALQASSEAVRLAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNLVS-AEHY 238 (822)
T ss_pred cCcchHHH-HHHHHHHHhc-chHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC-HHHH
Confidence 99974332 4444443333 4555599999999998886 567888888888888877777766554422111 1111
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhh-hHHHHHHhhhccccccCccchhhhHHHHhhcC-Cc--hhhHHHHHHHHHHHHHHHH
Q 001619 182 YYDSFKKLAGAWKEEL-ECESDS-AMEFQSELVLEGEVPAYYKDDETSSVIKDLLD-PS--VDLVRSKAIQKYRFIGEQI 256 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l-~~~~~~-~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~-~~--~~~e~ar~i~~~~~~~~~~ 256 (1043)
.+-........+.-+. ..+... ....+...+ . +....+..|-. +. ....+++.-.-+.......
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al---------a--~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKAL---------A--DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHH---------H--HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 1111111111110000 000000 000000000 0 00011111111 00 0111111100000000111
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC----CcHHH--HHHHH
Q 001619 257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA----DYPEF--WMRYV 330 (1043)
Q Consensus 257 y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~----~~~~L--Wl~yA 330 (1043)
+ ...+..||.+-.. ...-|.-+..|. ++.+...+.+++|..+|++++...+ ....+ -..+.
T Consensus 308 ~------~~vi~~y~~l~~~-----~~~~P~y~~~a~--adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 308 T------ADLIKEYEAMEAE-----GYKMPDYARRWA--ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred H------HHHHHHHHHhhhc-----CCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 1 1222333332210 011256666664 5555568999999999999987542 22222 12222
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhcc------------cc---hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHH
Q 001619 331 DFMESKGGREIASYALDRATQIFLKR------------LP---VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEK 395 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~ilerA~~~~~~~------------~p---~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~l 395 (1043)
--+...+++++|+.++++.... .|. +| .....-|....-.|++.+|.+++++.+.. .|....+
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l 452 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNL 452 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH
Confidence 2334568999999999998873 220 11 23333466677899999999999999864 6777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 001619 396 VTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRP 475 (1043)
Q Consensus 396 w~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p 475 (1043)
++.++++++..|...+|+.+|+.+..+ .|....+....+ .... ..|+ ...|+.+++..+...|
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l------~P~~~~~~~~~~-------~~al-~l~e---~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESL------APRSLILERAQA-------ETAM-ALQE---WHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh------CCccHHHHHHHH-------HHHH-hhhh---HHHHHHHHHHHHhhCC
Confidence 999999999999999999999887776 554332221111 1111 1132 4568888988888888
Q ss_pred Cc
Q 001619 476 DV 477 (1043)
Q Consensus 476 ~~ 477 (1043)
++
T Consensus 516 e~ 517 (822)
T PRK14574 516 ED 517 (822)
T ss_pred Cc
Confidence 87
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=4.7e-09 Score=128.13 Aligned_cols=138 Identities=11% Similarity=-0.052 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 001619 33 GSLDFDEWTSLLSEIE---NSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR---------LCSIDKVVEVFERAV 100 (1043)
Q Consensus 33 nP~d~~~W~~~i~~le---~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~---------~~~~e~a~~lfeRAL 100 (1043)
++.++++|..|+.-.. ...+++.+++...|+++++..|.+...|...+..... .+++++|...+++|+
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555544221 1112344556666666666666666655544433221 122556666666666
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~ 174 (1043)
+..|.+...|..++..+... ++.++|...|++|++..|. +...|..+.......|+++.|...|++++.+
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIH-SEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666665555544 5566666666666665554 3345555555555555555555555555553
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8.7e-08 Score=107.66 Aligned_cols=170 Identities=9% Similarity=0.038 Sum_probs=132.5
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
++|++.++|+.+..+..-.++++.+..-|++|+...|.+.--++..+-.+.+.+.++++...|+.|.+. .|.|++++-.
T Consensus 389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 788899999999887766788999999999999998888877887777777888999999999999988 6789999999
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChh------hHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSR------FIE-KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~------~~~-lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~ 436 (1043)
+|+.+...++|+.|.+-|++|+.. .++ .+. +.-+.+-+.+-.++++.|..++.+|+++ +|.+...|
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~------Dpkce~A~ 540 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL------DPKCEQAY 540 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc------CchHHHHH
Confidence 999999999999999999999852 222 111 2222222222348999999999999997 77655433
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 001619 437 VQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALY 472 (1043)
Q Consensus 437 ~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~ 472 (1043)
+.+..|+...|. +++|-.+||+++.
T Consensus 541 --------~tlaq~~lQ~~~---i~eAielFEksa~ 565 (606)
T KOG0547|consen 541 --------ETLAQFELQRGK---IDEAIELFEKSAQ 565 (606)
T ss_pred --------HHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence 555666666565 6788889988775
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1e-08 Score=125.24 Aligned_cols=140 Identities=15% Similarity=0.021 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
++|++...|..++..+...|++++++..|++|+...|.....+...+..+...|++++|...+++++....++.+..+..
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 34666667777777777789999999999999999888766544444444457889999999999887645677878888
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~ 426 (1043)
.+.+....|++++|+..+.+.... .+.....+...+......| ++|+..+++.++...+.
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 888888999999999999887653 3333333333333333334 58888888877764433
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=6.4e-07 Score=108.18 Aligned_cols=322 Identities=18% Similarity=0.164 Sum_probs=213.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRR 129 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~---~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~ 129 (1043)
+..+.++..|+|+|..+|.++.....+..+..... .+.++..++.+|....+.++.+-..++.+..-. +++..+-.
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~ 291 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK-KDYERVWH 291 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHH
Confidence 56678999999999999999999998888776553 477899999999999999999999999888777 89999999
Q ss_pred HHHHHHHhcCCC-CCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCcc-------HHHHHHHHHHHHHHHHHhhhhhh
Q 001619 130 LFKRALSFVGKD-YLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK-------LHHYYDSFKKLAGAWKEELECES 201 (1043)
Q Consensus 130 lferAL~~lp~~-~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~-------l~~~~~~y~~~~~~~~e~l~~~~ 201 (1043)
+.+-|+...-.. ..++.. --.++-....|+++.|.+.|-.+++....+ +-..+. . .+.+.++
T Consensus 292 la~~ai~~t~~~~~~aes~-Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i---~-~~dle~s----- 361 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESF-YQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI---K-RGDLEES----- 361 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH---H-hchHHHH-----
Confidence 999998765211 011112 222344456799999999999998743332 211111 0 0001100
Q ss_pred hhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001619 202 DSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHV 281 (1043)
Q Consensus 202 ~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~ 281 (1043)
..+++.+... .-+..+...++. .+|.... ..............++++
T Consensus 362 ----~~~fEkv~k~----~p~~~etm~iLG-------------~Lya~~~------~~~~~~d~a~~~l~K~~~------ 408 (1018)
T KOG2002|consen 362 ----KFCFEKVLKQ----LPNNYETMKILG-------------CLYAHSA------KKQEKRDKASNVLGKVLE------ 408 (1018)
T ss_pred ----HHHHHHHHHh----CcchHHHHHHHH-------------hHHHhhh------hhhHHHHHHHHHHHHHHh------
Confidence 1111111100 000111111111 1121100 111122333344444443
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-
Q 001619 282 KPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK- 355 (1043)
Q Consensus 282 ~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-----~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~- 355 (1043)
..|.+.+.|+.++.+++ .+++-....+|.+|+.. ..-.+++--+.+-+.-..|++++|+..|.+|.....+
T Consensus 409 --~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 409 --QTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred --cccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 34778899999998887 45655568899999832 2333455556677777889999999999999877321
Q ss_pred ---cc---chH--HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 356 ---RL---PVI--HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 356 ---~~---p~i--wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+. ..| -...|.+++..++++.|-++|...++. .|.++.-+++.+.|.+..+++..|...+..++..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 11 222 445588999999999999999999975 5778888888888888889999999999999986
No 59
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.16 E-value=8.6e-10 Score=124.88 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=127.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCP----------DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDK 91 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~----------~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~ 91 (1043)
+...|.+.|+.||.|++.|+.|+++-..... ...+..-.||+|||+.+|.+.+||+.|++...+..+.++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 3568999999999999999999997654311 113456789999999999999999999999988888999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHhcCCCCC---------------cHHHHHHHHHH
Q 001619 92 VVEVFERAVQSATYSVDVWFHYCSLSMSTF--EDPNDVRRLFKRALSFVGKDYL---------------CHTMWDKYIEF 154 (1043)
Q Consensus 92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~--~~~e~ar~lferAL~~lp~~~~---------------s~~IW~~yi~f 154 (1043)
+.+.++++|..+|.++.||..|++|..... .+++.++.+|.++|+.+..... -..|...++.|
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753 3688999999999988743211 12467777888
Q ss_pred HHHhhhhhhHHHHHHHHhc
Q 001619 155 EISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 155 e~~~~~~e~a~~iy~raL~ 173 (1043)
+...|-.+.|..+++-.|.
T Consensus 164 l~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHCCchHHHHHHHHHHHH
Confidence 8899999999999988865
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=9.5e-09 Score=119.69 Aligned_cols=287 Identities=12% Similarity=0.119 Sum_probs=212.2
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 001619 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR 133 (1043)
Q Consensus 54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfer 133 (1043)
...++...|++.-.+.++..=.-....+...+.+++++++++|+++-...|.-++=-.-|-..++.. .+ +-+...+-+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-q~-~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-QD-EVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-Hh-hHHHHHHHH
Confidence 4567778899966777776633334556667778999999999999998887665444444444433 11 112233322
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001619 134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVL 213 (1043)
Q Consensus 134 AL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~ 213 (1043)
- .+.++..++.-|-+...+..-.++.++|.+.|+|++.+...-.+. |.. ++.
T Consensus 412 ~--Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa----yTL-lGh--------------------- 463 (638)
T KOG1126|consen 412 D--LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA----YTL-LGH--------------------- 463 (638)
T ss_pred H--HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh----hhh-cCC---------------------
Confidence 2 233444588999999999988889999999999999874321110 000 000
Q ss_pred ccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHH
Q 001619 214 EGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWH 293 (1043)
Q Consensus 214 ~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~ 293 (1043)
|. +.. .+.+.+...|-.+|+ .+|..+.+|.
T Consensus 464 -----------E~-------------------------~~~------ee~d~a~~~fr~Al~--------~~~rhYnAwY 493 (638)
T KOG1126|consen 464 -----------ES-------------------------IAT------EEFDKAMKSFRKALG--------VDPRHYNAWY 493 (638)
T ss_pred -----------hh-------------------------hhh------HHHHhHHHHHHhhhc--------CCchhhHHHH
Confidence 00 000 112223344555554 6799999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1043)
Q Consensus 294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~ 373 (1043)
-+...+.+.+.++.|..-|++|+..+|....|-.-+..++.+.|..|+|..+|++|+.+ .+.++..-+..+.+....++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999977 66677666677888889999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+++|...|+..- ..+|+-.-++...+..-+++|+.+.|..-|-=|+++
T Consensus 573 ~~eal~~LEeLk-~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 573 YVEALQELEELK-ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHHH-HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999999999875 456766677888888999999999999999888886
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=2.4e-08 Score=105.98 Aligned_cols=204 Identities=15% Similarity=0.081 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~ 367 (1043)
....|...+..+...|+++.+...|++++...|.....|...+..+...|+.+.|...|++++.. .+..+.+|..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHH
Confidence 34667777777778999999999999999999999999999999999999999999999999987 56677789999999
Q ss_pred HHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Q 001619 368 KEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTE 446 (1043)
Q Consensus 368 E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~ 446 (1043)
....|++++|.+.|.+++.... +.....|...+......|+++.|...|++++.. .|..+..|..++.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~----- 177 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAE----- 177 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHH-----
Confidence 9999999999999999986422 233557778888888999999999999999997 4444544433322
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619 447 LIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 447 ~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p 518 (1043)
+....|. .+.|..++++++...|.. . ..+..........|+.+.+....+++.+.+|
T Consensus 178 ---~~~~~~~---~~~A~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 178 ---LYYLRGQ---YKDARAYLERYQQTYNQT--------A-ESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ---HHHHcCC---HHHHHHHHHHHHHhCCCC--------H-HHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 2222343 567899999998864443 2 2333556666778999999988887766543
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.7e-08 Score=109.19 Aligned_cols=280 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHH----HH
Q 001619 54 DIEMIGLVYDSFLAE-FPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND----VR 128 (1043)
Q Consensus 54 ~~~~~r~vyeraL~~-~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~----ar 128 (1043)
..+.+..-+++.+.. +|.+..+=...+.......+++.|..+|+..++.+|+-++=--.|-+.+.-. .+-.+ |.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-~~~skLs~LA~ 320 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-NDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-hhhHHHHHHHH
Confidence 455667778888888 9988777666666666677999999999999999998776555555544322 12111 22
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCcc--HHHHHH-HHHHHHHHHHHhhhhhhhhhH
Q 001619 129 RLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKK--LHHYYD-SFKKLAGAWKEELECESDSAM 205 (1043)
Q Consensus 129 ~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~--l~~~~~-~y~~~~~~~~e~l~~~~~~~~ 205 (1043)
.+++ .--......-|- +.+..-.+..++|...|+|+|++.+.- .|...- .|.+
T Consensus 321 ~v~~----idKyR~ETCCiI---aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE----------------- 376 (559)
T KOG1155|consen 321 NVSN----IDKYRPETCCII---ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE----------------- 376 (559)
T ss_pred HHHH----hccCCccceeee---hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-----------------
Confidence 2221 111111111121 233333456788999999999975432 121110 1111
Q ss_pred HHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 001619 206 EFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLD 285 (1043)
Q Consensus 206 ~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~ 285 (1043)
.+....++..|.++|+ ++
T Consensus 377 ------------------------------------------------------mKNt~AAi~sYRrAvd--------i~ 394 (559)
T KOG1155|consen 377 ------------------------------------------------------MKNTHAAIESYRRAVD--------IN 394 (559)
T ss_pred ------------------------------------------------------hcccHHHHHHHHHHHh--------cC
Confidence 0011112233444443 67
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
|.+...|.-+...+...+-+.=+...|.||+..-|+...+|...++.|++.+++++|.+.|.||+.. ......+....|
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~dte~~~l~~La 473 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GDTEGSALVRLA 473 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cccchHHHHHHH
Confidence 9999999999998888888888999999999999999999999999999999999999999999875 322335777889
Q ss_pred HHHHHhCCHHHHHHHHHhhhhC------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYID------SDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~------~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
++.++.++.++|...|++.+.. ..+...+.....+.++.+.+++++|-....+++.
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999999999988762 2333445455567788888888887765544444
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=4.3e-08 Score=101.27 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=156.6
Q ss_pred HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ 379 (1043)
...|++..++..+|+||...|++...|...|.+|...|..+.|+..|++|+.. .|+.-+|.-.|+.|+-..|.++.|-.
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHHhCCChHHHHH
Confidence 35899999999999999999999999999999999999999999999999988 77788899999999999999999999
Q ss_pred HHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 001619 380 AFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRS 458 (1043)
Q Consensus 380 ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~ 458 (1043)
-|++|+..+. +.-.+.|....-.-.+.|.++.|++.|+++|+. +|.++...+..++..| ..|+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~------dp~~~~~~l~~a~~~~--------~~~~-- 188 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL------DPQFPPALLELARLHY--------KAGD-- 188 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh------CcCCChHHHHHHHHHH--------hccc--
Confidence 9999997543 122345555555556789999999999999998 6666654444444333 2233
Q ss_pred hHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 001619 459 HISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 459 ~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.-.||..+++.....+.. .+.+| +=+++++..|+.+.+-+--.+.-+.||.+..
T Consensus 189 -y~~Ar~~~~~~~~~~~~~--------A~sL~-L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 189 -YAPARLYLERYQQRGGAQ--------AESLL-LGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred -chHHHHHHHHHHhccccc--------HHHHH-HHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 336888998877644432 23333 4567889999999999999999999998655
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=4.7e-08 Score=109.79 Aligned_cols=148 Identities=9% Similarity=-0.069 Sum_probs=111.9
Q ss_pred CCCccHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001619 18 PVGFGKQGLEEFIAEGSLD----FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1043)
Q Consensus 18 ~~~~~~~~le~~i~~nP~d----~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~ 93 (1043)
..|..+..+.+.|.+.|.+ ...|......+... +..+.+...|+++++.+|.....|..++......|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3345667788888766644 44577776666666 88888999999999999999999999998888889999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619 94 EVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1043)
Q Consensus 94 ~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL 172 (1043)
..|++|++..|.+...|...+..+... +.++.|.+.|++++..-|.+.. ..+|... ....++.+.|...|.+++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~~P~~~~-~~~~~~l---~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDDLLAFYQDDPNDPY-RALWLYL---AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH-HHHHHHH---HHccCCHHHHHHHHHHHH
Confidence 999999999999999998888877776 8899999999999987776431 2344322 223445666666665544
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.00 E-value=3e-07 Score=108.22 Aligned_cols=279 Identities=8% Similarity=-0.103 Sum_probs=185.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-GYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~-~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
..+.+.....|...-.++-.++..... ++.+.+...|+++++.+|.+. .+...++.+....|+++.|...|++.++.
T Consensus 105 ~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~ 182 (409)
T TIGR00540 105 KLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM 182 (409)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345556666676666677666666655 899999999999999999985 67887899999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhhhhhHHHHHHHHhc-CCC
Q 001619 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH-----TMWDKYIEFEISQQRWSSLAQIFVQTLR-FPS 176 (1043)
Q Consensus 103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~-----~IW~~yi~fe~~~~~~e~a~~iy~raL~-~p~ 176 (1043)
.|.++.++..++...... ++.+.+.+++++.++....+.... ..|...+.- +..+.....+.++.. .|.
T Consensus 183 ~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~ 257 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE----AMADEGIDGLLNWWKNQPR 257 (409)
T ss_pred CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHCCH
Confidence 999999999999999888 899999999999988633221100 111111100 001111111111111 110
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHH
Q 001619 177 KKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQI 256 (1043)
Q Consensus 177 ~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~ 256 (1043)
. ..++.+....+...
T Consensus 258 ~------------------------------------------~~~~~~l~~~~a~~----------------------- 272 (409)
T TIGR00540 258 H------------------------------------------RRHNIALKIALAEH----------------------- 272 (409)
T ss_pred H------------------------------------------HhCCHHHHHHHHHH-----------------------
Confidence 0 00000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHH----HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH--HHHHHHH
Q 001619 257 YKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK----NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP--EFWMRYV 330 (1043)
Q Consensus 257 y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~----~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~--~LWl~yA 330 (1043)
+....+...+...+++++++ .|.+.. ....++.+. .++.+.+...++++++..|+.+ .+...++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~--------~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKK--------LGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred HHHCCChHHHHHHHHHHHhh--------CCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 11111122233344455542 233332 333333332 4678899999999999999999 8899999
Q ss_pred HHHHHcCChHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 331 DFMESKGGREIASYALDR--ATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~iler--A~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
..+.+.|++++|+..|++ ++.. .| .+.++..++.+.+..|+.++|+++|++++.
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~-~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKE-QL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999995 5444 33 334677999999999999999999999875
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.99 E-value=1.3e-06 Score=102.39 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=127.2
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE--------FWMRYVDFMESKGGREIASYALDRATQIFLK 355 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~--------LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~ 355 (1043)
.+|++.....-.+..+...|+.+.+..+|++..+....... .|.....-.....+.+....+++...+. .+
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~ 260 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TR 260 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-Hh
Confidence 34666666666666666677777777777777765433222 2222222222223333444444333222 34
Q ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHH
Q 001619 356 RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLL 435 (1043)
Q Consensus 356 ~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l 435 (1043)
+.+.+++.++......|+.++|.++++++++. .+ ...+...|+.+. .|+.+++.+.+++.++. +|..+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-~~~l~~l~~~l~--~~~~~~al~~~e~~lk~------~P~~~~l 330 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-DERLVLLIPRLK--TNNPEQLEKVLRQQIKQ------HGDTPLL 330 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-CHHHHHHHhhcc--CCChHHHHHHHHHHHhh------CCCCHHH
Confidence 56778888888888888888888888888763 22 345555665553 37888888888888876 6666666
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001619 436 YVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIK 515 (1043)
Q Consensus 436 ~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k 515 (1043)
++.+++.. ...+. .++||..|++++...|+. ..+..+....+..|..+.|..+|.+++.
T Consensus 331 ~l~lgrl~--------~~~~~---~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 331 WSTLGQLL--------MKHGE---WQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHH--------HHCCC---HHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54444322 23333 567888888888877775 2345666677778888888888888887
Q ss_pred hC
Q 001619 516 LF 517 (1043)
Q Consensus 516 ~~ 517 (1043)
.+
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 65
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=1.3e-05 Score=93.51 Aligned_cols=349 Identities=12% Similarity=0.116 Sum_probs=204.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
.+.....++.++.|.-+|-.+.-..+.. .+.+++.+-|+.||...|++..+|+.+.-+-...++++-....--+.|..
T Consensus 61 ~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 61 YELVRLGLRNDLKSHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 3445567778888888888876655543 56788888899999999999999988888887778888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC---------------------------------cHHHHH
Q 001619 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL---------------------------------CHTMWD 149 (1043)
Q Consensus 103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~---------------------------------s~~IW~ 149 (1043)
.|..-.-|+.|+.-.... ++...|..+++.-......... ...|-.
T Consensus 139 ~~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD 217 (700)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH
Confidence 888888888887543333 3333333333332222210000 111111
Q ss_pred H------HHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhcccccc----
Q 001619 150 K------YIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPA---- 219 (1043)
Q Consensus 150 ~------yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~---- 219 (1043)
. -++++...++.+.|..+|++.|.-.+. .+.++..+....+.+...+.... ...+...+...+.....
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk-~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALK-ALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHH-HHHHHHhhcCcccccchhccH
Confidence 1 123334457788999999988764333 34555555554432111111000 00000111111110000
Q ss_pred -CccchhhhHHHHhhc----CCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc-cCCC---CCCCChH
Q 001619 220 -YYKDDETSSVIKDLL----DPS--VDLVRSKAIQKYRFIGEQIYKEASQLDEK-INCFENLIRR-PYFH---VKPLDDI 287 (1043)
Q Consensus 220 -~~~~~e~~~~i~~~~----~~~--~~~e~ar~i~~~~~~~~~~y~~a~~~~~~-~~~fE~~i~r-~~~~---~~~~~p~ 287 (1043)
-..+++....+..|+ ..+ .-|...+.+|+... ...+.++ ...|...+.. .++. .....|-
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~--------k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE--------KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh--------HhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 001112222222221 110 11222223332210 0011111 1223333322 1221 1113455
Q ss_pred HHHHHHHH--HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHH--H
Q 001619 288 QLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL--F 363 (1043)
Q Consensus 288 ~~~~W~~y--i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl--~ 363 (1043)
..-+|..| +.-....|+++.+....+.|+..+|...++++--|+.+-..|+++.|...+++|..+ +.++..+ -
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el---D~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL---DTADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cchhHHHHHH
Confidence 56788876 333446799999999999999999999999999999999999999999999999887 5555555 5
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 364 NARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
.|++..+.++++.|.++..+.+..
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhc
Confidence 899999999999999998877653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=4e-07 Score=102.33 Aligned_cols=117 Identities=10% Similarity=-0.054 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 001619 56 EMIGLVYDSFLAEFPLC----YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLF 131 (1043)
Q Consensus 56 ~~~r~vyeraL~~~P~s----~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lf 131 (1043)
+....-+.++|...|.+ ...|...+......|++++|+..|++|+...|.++..|...+.+.... ++++.|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~-g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA-GNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 33444566677655543 456888888888999999999999999999999999999999988888 9999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCC
Q 001619 132 KRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPS 176 (1043)
Q Consensus 132 erAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~ 176 (1043)
++|++.-|. ....|..........|+++.|.+.|++++...+
T Consensus 122 ~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 122 DSVLELDPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999997775 446777777666677888999999888887533
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=2.5e-05 Score=91.20 Aligned_cols=354 Identities=12% Similarity=0.100 Sum_probs=203.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P 104 (1043)
.++..|+.+|...+.---..=.+-.. |+.+++-...+++++..+.|.=-|.-+.-+.....++++|.++|..||...|
T Consensus 29 ~~~~iL~k~~eHgeslAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 29 LIKQILKKFPEHGESLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred HHHHHHHhCCccchhHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 34455556666555433321112223 7778888888999999999999999999988888899999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC---CccHHH
Q 001619 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP---SKKLHH 181 (1043)
Q Consensus 105 ~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p---~~~l~~ 181 (1043)
++..||.+.+-+-... ++++-...+-.+-|...|. .+.-|..|+.-..-.|++..+..|.+...+.. ....
T Consensus 107 dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~-- 180 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE-- 180 (700)
T ss_pred CcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH--
Confidence 9999999887665544 6777666666666666554 45789888876555677777777776664321 1110
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001619 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~ 261 (1043)
.|+..+-.+.+. ...+..|.+ ...+....+..+.+. +-..+.......+.+..
T Consensus 181 ---~~e~se~~Ly~n------------~i~~E~g~~---------q~ale~L~~~e~~i~---Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 181 ---DYEHSELLLYQN------------QILIEAGSL---------QKALEHLLDNEKQIV---DKLAFEETKADLLMKLG 233 (700)
T ss_pred ---HHHHHHHHHHHH------------HHHHHcccH---------HHHHHHHHhhhhHHH---HHHHHhhhHHHHHHHHh
Confidence 111110000000 000000000 000000000000000 00000000111111222
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHH-HHcCChHHHHHHHHHHhcc-----CCC--------cHHH--
Q 001619 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFA-EKQGDFDWVVKLYERCLIP-----CAD--------YPEF-- 325 (1043)
Q Consensus 262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e-~~~g~~e~~~~lyerAl~~-----~~~--------~~~L-- 325 (1043)
.+.++...|..+|. .+|+++.-+..+...+ .-.+..+.+..+|.+.-.. ||. ..++
T Consensus 234 ~lEeA~~~y~~Ll~--------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLE--------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred hHHhHHHHHHHHHh--------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 22333334444444 3577777666665444 2345566777888887653 211 1222
Q ss_pred -HHHHHHHHHHcCC---hHHHHH---------HHHHHHHHHhc------------------ccchHHHHH--HHHHHHhC
Q 001619 326 -WMRYVDFMESKGG---REIASY---------ALDRATQIFLK------------------RLPVIHLFN--ARYKEQIG 372 (1043)
Q Consensus 326 -Wl~yAk~~e~~g~---~e~Ar~---------ilerA~~~~~~------------------~~p~iwl~~--A~~E~~~g 372 (1043)
.-.|..-..+.|- +...+. ++++-+..+.. -.+.+|+.| +.-..+.|
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 2223222223331 111222 44444432211 012456654 44456799
Q ss_pred CHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 373 ~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+++.|...+..|+. ..|+.+++++.-+++....|+++.|-.++++|.+.
T Consensus 386 ~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 386 DYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred cHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 99999999999995 57888999999999999999999999999999987
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=3.2e-07 Score=94.96 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=73.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhh
Q 001619 83 KARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWS 162 (1043)
Q Consensus 83 e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e 162 (1043)
....|++..|++-+|+||+.+|.+++.|...+.+.... +..+.|++-|++|+..-|. ..++-..|.-|+-..|.++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL-GENDLADESYRKALSLAPN---NGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChhhHHHHHHHHHhcCCC---ccchhhhhhHHHHhCCChH
Confidence 45668888999999999999999999998888888777 8888888888888886665 5678888888888888888
Q ss_pred hHHHHHHHHhcCCC
Q 001619 163 SLAQIFVQTLRFPS 176 (1043)
Q Consensus 163 ~a~~iy~raL~~p~ 176 (1043)
.+..-|++++..|.
T Consensus 121 eA~q~F~~Al~~P~ 134 (250)
T COG3063 121 EAMQQFERALADPA 134 (250)
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888877663
No 71
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.5e-06 Score=101.72 Aligned_cols=253 Identities=13% Similarity=0.139 Sum_probs=180.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
.+.++++++|+.+-+..|..++----|-.....+.+.-+.-.+-.-.+..+|.+++-|...+++.-.+ ++.+.|.+.|+
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~ 445 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFK 445 (638)
T ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHH
Confidence 57789999999999999987754433333322222222222333445567899999999999998888 89999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i 212 (1043)
||+..-|.......+|-. ++ .....+|.|.+-|+.+|.+.+.. |..|.+-
T Consensus 446 RAiQldp~faYayTLlGh--E~-~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGl-------------------- 495 (638)
T KOG1126|consen 446 RAIQLDPRFAYAYTLLGH--ES-IATEEFDKAMKSFRKALGVDPRH-------YNAWYGL-------------------- 495 (638)
T ss_pred HhhccCCccchhhhhcCC--hh-hhhHHHHhHHHHHHhhhcCCchh-------hHHHHhh--------------------
Confidence 999865522112222211 00 12345888999999999875443 3233221
Q ss_pred hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHH
Q 001619 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1043)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W 292 (1043)
|. +|-+..+...+..-|++++. +||.+.-+-
T Consensus 496 --G~---------------------------------------vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~ 526 (638)
T KOG1126|consen 496 --GT---------------------------------------VYLKQEKLEFAEFHFQKAVE--------INPSNSVIL 526 (638)
T ss_pred --hh---------------------------------------heeccchhhHHHHHHHhhhc--------CCccchhHH
Confidence 00 00001111122233555553 789888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhC
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g 372 (1043)
.-+..++...|..|.+..+|++|+...|+.+--=...+..+...++.++|...||....+ .|+...++..-++...+.|
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHc
Confidence 888889988999999999999999999988877778888888899999999999987765 7777789999999999999
Q ss_pred CHHHHHHHHHhhhh
Q 001619 373 DTSAARAAFPESYI 386 (1043)
Q Consensus 373 ~~d~Ar~ll~ral~ 386 (1043)
+.+.|..-|.-|..
T Consensus 606 ~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 606 NTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHhhHHHhc
Confidence 99999999888875
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=7.9e-05 Score=89.06 Aligned_cols=305 Identities=14% Similarity=0.147 Sum_probs=190.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC--
Q 001619 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTF-- 121 (1043)
Q Consensus 44 i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~-- 121 (1043)
+..++.. |+.+++...++..-....+...+-..-+++..+.|.+++|..+|...|..+|.+.+....|...+....
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3444444 889999999999999999888888888999999999999999999999999999998888888763221
Q ss_pred --CChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh-hhh-hHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHH
Q 001619 122 --EDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ-RWS-SLAQIFVQTLR--FPSKKLHHYYDSFKKLAGAWKE 195 (1043)
Q Consensus 122 --~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~-~~e-~a~~iy~raL~--~p~~~l~~~~~~y~~~~~~~~e 195 (1043)
.+.+....+|+.--...|.. .+...+-+....| .+. .+...+.+.|+ +|. .+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-----lF~----------- 147 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRS-----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-----LFS----------- 147 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccc-----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-----HHH-----------
Confidence 23455666666544444431 1111111111011 011 11111111121 110 000
Q ss_pred hhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001619 196 ELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIR 275 (1043)
Q Consensus 196 ~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~ 275 (1043)
.|+.++.+.. ++..|.. ....|...+.
T Consensus 148 ---------------------------------~lk~Ly~d~~---K~~~i~~-----------------l~~~~~~~l~ 174 (517)
T PF12569_consen 148 ---------------------------------NLKPLYKDPE---KAAIIES-----------------LVEEYVNSLE 174 (517)
T ss_pred ---------------------------------HHHHHHcChh---HHHHHHH-----------------HHHHHHHhhc
Confidence 0011110000 0000000 0011111111
Q ss_pred cc-CCCCC---CCChHHHHHHHHH--HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001619 276 RP-YFHVK---PLDDIQLKNWHDY--LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRA 349 (1043)
Q Consensus 276 r~-~~~~~---~~~p~~~~~W~~y--i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA 349 (1043)
.. .+... ...+...-+|.-| +..+...|++++|....++||...|..+++++.-|+.+...|++.+|...++.|
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 10 01100 1233444577655 667778899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC---hhhHH---HHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 001619 350 TQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD---SRFIE---KVTF--KANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 350 ~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~---~~~~~---lw~~--~a~lE~~~G~~e~Ar~lyekale 421 (1043)
... ....--|-.-.+++..|.|+++.|.+++...+.... .+..+ +|.. .+.--.+.|++-.|.+-|..+.+
T Consensus 255 r~L-D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 255 REL-DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HhC-ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876 222223566789999999999999999988775331 11111 4543 45555677999999999988888
Q ss_pred HHHh
Q 001619 422 TAAE 425 (1043)
Q Consensus 422 ~~~~ 425 (1043)
.+..
T Consensus 334 ~f~~ 337 (517)
T PF12569_consen 334 HFDD 337 (517)
T ss_pred HHHH
Confidence 7654
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.4e-06 Score=100.44 Aligned_cols=228 Identities=14% Similarity=0.171 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
|++.++-.+||.+++.+|...+.|..+...-..+++-..|+..|+|||+..|.+.+.-+.++--.... +.-..|.+.|+
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe-g~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE-GLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 66777777777777777777777777776666666666777777777777777777766665544433 33334555555
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK-KLHHYYDSFKKLAGAWKEELECESDSAMEFQSEL 211 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~-~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~ 211 (1043)
+=|+.-|.. +|..... ..+..+.- -.++.. .+..+-..|.+....
T Consensus 378 ~Wi~~~p~y-----~~l~~a~---~~~~~~~~-------~s~~~~~~l~~i~~~fLeaa~~------------------- 423 (579)
T KOG1125|consen 378 KWIRNKPKY-----VHLVSAG---ENEDFENT-------KSFLDSSHLAHIQELFLEAARQ------------------- 423 (579)
T ss_pred HHHHhCccc-----hhccccC---ccccccCC-------cCCCCHHHHHHHHHHHHHHHHh-------------------
Confidence 444433221 1111100 00000000 000000 001111111111110
Q ss_pred hhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHH
Q 001619 212 VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKN 291 (1043)
Q Consensus 212 i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~ 291 (1043)
. ....+.|+...+.-+ |.-..+...+...|+.+|. ++|++..+
T Consensus 424 -----~-~~~~DpdvQ~~LGVL-----------------------y~ls~efdraiDcf~~AL~--------v~Pnd~~l 466 (579)
T KOG1125|consen 424 -----L-PTKIDPDVQSGLGVL-----------------------YNLSGEFDRAVDCFEAALQ--------VKPNDYLL 466 (579)
T ss_pred -----C-CCCCChhHHhhhHHH-----------------------HhcchHHHHHHHHHHHHHh--------cCCchHHH
Confidence 0 001123333332222 2222334445567777775 67999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
|.++..-+......++|+..|.|||..-|.+...|+..+--+...|.+.+|.+.|-+|+..
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999888876667889999999999999999999999999999999999999999888876
No 74
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.70 E-value=5.8e-08 Score=103.29 Aligned_cols=140 Identities=12% Similarity=0.295 Sum_probs=113.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcH----------------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDI----------------------EMIGLVYDSFLAEFPLCYGYWRKYAD 81 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~----------------------~~~r~vyeraL~~~P~s~~lW~~y~~ 81 (1043)
-.+|..|.+--.....+++||.. |-.- +.+ .++-.+|-|+...+|+.+++|..|+.
T Consensus 38 r~fE~rL~rr~~klnDf~~YI~y-E~nl-eklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~ 115 (435)
T COG5191 38 RKFELRLQRREKKLNDFMRYIKY-ECNL-EKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAA 115 (435)
T ss_pred HHHHHHHhcccchHHHHHHHHHH-HhhH-HHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHH
Confidence 36778888888899999999874 3100 000 12223567888899999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh
Q 001619 82 HKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW 161 (1043)
Q Consensus 82 ~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~ 161 (1043)
...+.+.+.++.++|..+|..+|.+++||+--|.|+....++++.+|.+|.++|+.-+. ++.||..|.+||...
T Consensus 116 Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~---~p~iw~eyfr~El~y--- 189 (435)
T COG5191 116 YVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR---SPRIWIEYFRMELMY--- 189 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC---CchHHHHHHHHHHHH---
Confidence 99988899999999999999999999999998999877668999999999999997765 678999999999865
Q ss_pred hhHHHHHHHHhc
Q 001619 162 SSLAQIFVQTLR 173 (1043)
Q Consensus 162 e~a~~iy~raL~ 173 (1043)
+.+++.|.++
T Consensus 190 --iTKL~~R~~K 199 (435)
T COG5191 190 --ITKLINRREK 199 (435)
T ss_pred --HHHHHhhHHH
Confidence 4566666643
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=0.00013 Score=87.03 Aligned_cols=136 Identities=15% Similarity=0.038 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARY 367 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~ 367 (1043)
...+|.-.+++..+.+..+.++..+.+|-+.++..+.+|.+.+..++..|..++|...|.-|+.+ .|+...+-.+.|++
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-dP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-DPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-CCCCcHHHHHHHHH
Confidence 45789888888888999999999999999999999999999999999999999999999999977 77777788899999
Q ss_pred HHHhCCHHHHH--HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 368 KEQIGDTSAAR--AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 368 E~~~g~~d~Ar--~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
..+.|+-.-|. .++..|+. ..+.+.+.|+..+...+..|+.+.|-+.|.-|+++...
T Consensus 728 lle~G~~~la~~~~~L~dalr-~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALR-LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 99999766554 49999985 56778899999999999999999999999999998443
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.6e-05 Score=89.89 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHH
Q 001619 19 VGFGKQGLEEFIAEGSLDFDEWTSLLSE 46 (1043)
Q Consensus 19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~ 46 (1043)
++..-..|.++|..+++++++..+++..
T Consensus 157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~ 184 (611)
T KOG1173|consen 157 REEARDKYKEALLADAKCFEAFEKLVSA 184 (611)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4445678899999999999999888764
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=7.4e-05 Score=85.99 Aligned_cols=311 Identities=11% Similarity=0.016 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619 33 GSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1043)
Q Consensus 33 nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L 109 (1043)
+|+..-.|..+...+... ++.+.+...|.++....|.+. ..+.-.+-.....|+++++..+++++++..|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 678888888887766554 566666888999888888663 344444445566789999999999999999999988
Q ss_pred HHH---HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHH
Q 001619 110 WFH---YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSF 186 (1043)
Q Consensus 110 Wl~---Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y 186 (1043)
|.. |....... +....+.++++. ..+.++.....+..........|+++.+...|++++.+.+.+.+....
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~-- 153 (355)
T cd05804 80 LKLHLGAFGLGDFS-GMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA-- 153 (355)
T ss_pred HHHhHHHHHhcccc-cCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH--
Confidence 772 22221111 334444444443 223333222333334445567788999999999998764443221110
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 187 KKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEK 266 (1043)
Q Consensus 187 ~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~ 266 (1043)
+.. +. ...+. ++ ..
T Consensus 154 ---la~---------------i~-------------------------~~~g~-----------------~~------eA 167 (355)
T cd05804 154 ---VAH---------------VL-------------------------EMQGR-----------------FK------EG 167 (355)
T ss_pred ---HHH---------------HH-------------------------HHcCC-----------------HH------HH
Confidence 000 00 00000 11 11
Q ss_pred HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CcHHHHH-HHHH---HHHHcCChHH
Q 001619 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA-DYPEFWM-RYVD---FMESKGGREI 341 (1043)
Q Consensus 267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~-~~~~LWl-~yAk---~~e~~g~~e~ 341 (1043)
...+++.+... ..........|..++.++...|+++++..+|++++...+ .....+. ..+. .+...|....
T Consensus 168 ~~~l~~~l~~~----~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 168 IAFMESWRDTW----DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHhhhhcc----CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 22223333210 001122345677778888888999999999999875433 1112222 2211 1122333222
Q ss_pred HHHHHHHHHHHHhcc-----cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh--------hhHHHHHHHHHHHHHcCC
Q 001619 342 ASYALDRATQIFLKR-----LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS--------RFIEKVTFKANMERRLGN 408 (1043)
Q Consensus 342 Ar~ilerA~~~~~~~-----~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~--------~~~~lw~~~a~lE~~~G~ 408 (1043)
+... +.+.....+. .....+..+......|+.+.|..+++........ ..+.+.+..+-.....|+
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 2221 1122111111 1223345666677788899999888877542111 123455556677778888
Q ss_pred HHHHHHHHHHHHHH
Q 001619 409 FVAACDTYKEALET 422 (1043)
Q Consensus 409 ~e~Ar~lyekale~ 422 (1043)
.+.|+.++..++..
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888888886
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=5.2e-07 Score=95.04 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhhCCC--hHHHHHH
Q 001619 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLS-MSTFED--PNDVRRL 130 (1043)
Q Consensus 54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~-~~~~~~--~e~ar~l 130 (1043)
+.+++...++++|+.+|.+.+.|..++......|++++|...|++|+...|.+.++|..|+..+ ... +. .++++.+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-g~~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA-GQHMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCcHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555555555532 222 22 2455555
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619 131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~ 173 (1043)
|++|++.-|.+ ...|...+......|+++.|...|+++++
T Consensus 133 l~~al~~dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALDANE---VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555544442 23444444444445555555555555554
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6.2e-05 Score=83.86 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=147.4
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
+|+++++...|.+||.....+.+........++..|++++|...|-+.-.+ +.++..+....|.+.+...+...|.++|
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 578999999999999887777777777777888899999999999876655 4467778889999999999999999999
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 001619 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHIS 461 (1043)
Q Consensus 382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~le 461 (1043)
..+.. ..|+...+..+.++|..+-|+-..|...+-..... ||.... ..+|+...- -++...+
T Consensus 582 ~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry------fp~nie------~iewl~ayy-----idtqf~e 643 (840)
T KOG2003|consen 582 MQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY------FPCNIE------TIEWLAAYY-----IDTQFSE 643 (840)
T ss_pred HHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc------cCcchH------HHHHHHHHH-----HhhHHHH
Confidence 99975 46666789999999999999999998887666665 443321 123321111 1133456
Q ss_pred HHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCc
Q 001619 462 IVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFL-DLCGTIHDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 462 raR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fe-e~~G~~~~a~~~~~ra~k~~p~~~ 521 (1043)
++-..||+|-..-|.. .-|.+.+.-+ ++-||...|..+|...-+.||..-
T Consensus 644 kai~y~ekaaliqp~~----------~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQ----------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHhcCccH----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 7788999988766664 2366766666 677999999999999999999753
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=0.00051 Score=82.08 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHH
Q 001619 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQ 438 (1043)
Q Consensus 359 ~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~ 438 (1043)
.+|+..+.+..+.++-++|+..+..|-+ ..+.+..+|...+.+....|..++|...|..|+.+ .|..+...
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~-~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~hv~s~-- 721 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK-IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDHVPSM-- 721 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh-cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCCcHHH--
Confidence 6899999999999999999988888875 35666778888888888889999999999999987 44433222
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619 439 FSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 439 ~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p 518 (1043)
....+.....|.. ++...|+++..|+...|.+ -+.|..-....+..|+.+.|.+.|.-|++.=+
T Consensus 722 ------~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n---------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 722 ------TALAELLLELGSP-RLAEKRSLLSDALRLDPLN---------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred ------HHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 2344555555644 4777889999999998887 23454444455678999999999998888755
Q ss_pred C
Q 001619 519 H 519 (1043)
Q Consensus 519 ~ 519 (1043)
.
T Consensus 786 S 786 (799)
T KOG4162|consen 786 S 786 (799)
T ss_pred C
Confidence 4
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=0.0001 Score=89.58 Aligned_cols=388 Identities=14% Similarity=0.076 Sum_probs=231.2
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
.....|-++++.+++=..+|..+...++.. .+..++++.|.+|.+..+..+..|...++...+..+++.|..+.-++-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 344567778888888888888888877766 577888999999999999999999999998888888888888866666
Q ss_pred HhcCCCH--HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC-CCc
Q 001619 101 QSATYSV--DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF-PSK 177 (1043)
Q Consensus 101 ~~~P~s~--~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~-p~~ 177 (1043)
+..|.-. .=|....-+..+- ++...+..-|.-|++.-|.++ ..|....+-.-+.|.+..+.++|.|+..+ |.+
T Consensus 554 qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~---n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDY---NLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhH---HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 6655433 3455544444444 677888899999999888754 69999999888899999999999999654 333
Q ss_pred cHHHHHH--------HHHHHHHHHHHhhhhhh--hhh--------HHHHHHhhhccccccCccchhhhHHHHhhcCCchh
Q 001619 178 KLHHYYD--------SFKKLAGAWKEELECES--DSA--------MEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVD 239 (1043)
Q Consensus 178 ~l~~~~~--------~y~~~~~~~~e~l~~~~--~~~--------~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~ 239 (1043)
....++. +|++.++.+...+.... ... ++......++|......+..+ ..+..+.....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e--ksie~f~~~l~- 706 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE--KSIESFIVSLI- 706 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHH-
Confidence 2222221 23333332221111000 000 000011111111111110000 00000000000
Q ss_pred hHH-HHHHHHHHH-HHHHHH---HHH--HHHHHHHHH----HHHHhccc--C--CCCC-----CC-ChHHHHHHHHHHHH
Q 001619 240 LVR-SKAIQKYRF-IGEQIY---KEA--SQLDEKINC----FENLIRRP--Y--FHVK-----PL-DDIQLKNWHDYLSF 298 (1043)
Q Consensus 240 ~e~-ar~i~~~~~-~~~~~y---~~a--~~~~~~~~~----fE~~i~r~--~--~~~~-----~~-~p~~~~~W~~yi~~ 298 (1043)
++ +.... .|. ..+.++ ... .-.+.-... +|..+.-+ - +... .+ ......-|.+.+.-
T Consensus 707 -h~~~~~~~-~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 -HSLQSDRL-QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred -HhhhhhHH-HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 00 00000 000 000000 000 000011111 22211000 0 0000 00 00112235544322
Q ss_pred HH----H---cC-ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619 299 AE----K---QG-DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1043)
Q Consensus 299 e~----~---~g-~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~ 370 (1043)
+. . .+ +...++..+.++|..|.+...+|.+..-. -..|++.-|...|-+++.. .+.+.-.|+.++-+...
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 21 1 12 34578999999999999999999999877 4346777777888777755 66677789999999999
Q ss_pred hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.+++-|...|.++.. ..|.+..-|+.-+-+-+..|++-.+..+|.-.-+.
T Consensus 863 n~d~E~A~~af~~~qS-LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQS-LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred cccHHHhhHHHHhhhh-cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 9999999999999985 46767788999999999999888888888774444
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00017 Score=80.12 Aligned_cols=227 Identities=16% Similarity=0.101 Sum_probs=134.1
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN 364 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~ 364 (1043)
.|.++++....++.+...|+.+.+...|+++...+|...+---.|+..+-..|+.+...++..+-+.+ .+....-|+-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhh
Confidence 35566666666666666666666666666666666666666666666666666666666655555544 22334456655
Q ss_pred HHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccCCccHHHHHHHHH--
Q 001619 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE-QRKFHTLPLLYVQFSR-- 441 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~-~~~~p~~~~l~~~~ar-- 441 (1043)
+...+...++.+|..+-+++|. ..+.+..-++.-..+.+..|..+.|.-.|+.|+.+... ...+.++..-|+-+.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCID-SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhc-cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 5666666666666666666663 34444555555556666666666666666666655310 0111112222222211
Q ss_pred -------HHHHH---HHHHHHHhC------CCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHH
Q 001619 442 -------LTYTE---LIKFTMVHG------GRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHD 505 (1043)
Q Consensus 442 -------~~~~~---~~~fe~~~g------~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~ 505 (1043)
..+.. -++-++..| +....|+|..++|++|..+|.- ......-.++...+|-.++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y---------~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY---------TPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc---------HHHHHHHHHHHHhhCccch
Confidence 11100 011111122 2334578999999999999985 1234456667778899999
Q ss_pred HHHHHHHHHhhCCCCcc
Q 001619 506 IRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 506 a~~~~~ra~k~~p~~~~ 522 (1043)
+.++++|+++.+++...
T Consensus 457 ~i~LLe~~L~~~~D~~L 473 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDVNL 473 (564)
T ss_pred HHHHHHHHHhhccccHH
Confidence 99999999999998766
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.6e-05 Score=86.53 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=96.2
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHH-H-HHHHcCChHHHHHHHHHHHHHHhcccchHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYV-D-FMESKGGREIASYALDRATQIFLKRLPVIH 361 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yA-k-~~e~~g~~e~Ar~ilerA~~~~~~~~p~iw 361 (1043)
+-|..++.|.-++.-+...|.+.++..+-..++...+....--.-+. . .+..-..-++|.+.|+++++. .|..-..-
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-~P~Y~~AV 441 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-NPIYTPAV 441 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc-CCccHHHH
Confidence 44677777777777766677888877777777776665533222221 1 111222368999999999987 55544455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 362 LFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 362 l~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+..|++..+.|..+.+.+++++++.... + ..+....+++..-.+.+.+|...|..|+..
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFP-D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhcc-c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6678899999999999999999996433 2 346777788888888888888888888886
No 84
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.6e-06 Score=95.19 Aligned_cols=133 Identities=11% Similarity=0.086 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001619 35 LDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYC 114 (1043)
Q Consensus 35 ~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~ 114 (1043)
.+.+.-..-++.+-.. ..+..-.++++..++.+|...+...-.|--..+.|+..+...+=-+.|...|.+.--|.+-+
T Consensus 242 ~~~dll~~~ad~~y~~--c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYG--CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHc--ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3444444444433222 56777777888888888877776666666555556444444444456666787777888777
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619 115 SLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 115 ~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~ 173 (1043)
-|.... +.+.+||+.|.+|...-|. -++-|+.|.--..-.+.-+.+...|.+|-+
T Consensus 320 ~YYl~i-~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 320 CYYLMI-GKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHHh-cCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 777666 7777788888877654332 347777777655555556677777776644
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.56 E-value=2.1e-05 Score=93.04 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=78.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----ccc----h
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK----RLP----V 359 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~--------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~----~~p----~ 359 (1043)
+..+...+.++.+..+|.+++.. ++....+...++..+...|++++|+.+|++|+...-. ... -
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 33444445555555555555532 2234566777777777777777777777777765311 111 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhh------hCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 360 IHLFNARYKEQIGDTSAARAAFPESY------IDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 360 iwl~~A~~E~~~g~~d~Ar~ll~ral------~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
||-....+ .+.+.+..|-.+|.+++ ....++..-.+...+.+.+..|+++.|.++-++++..
T Consensus 412 l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 412 LNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55555555 55555555555555443 3333455667888889999999999999998888865
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=1.4e-06 Score=91.79 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=107.4
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHhCC--HHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYK-EQIGD--TSAAR 378 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E-~~~g~--~d~Ar 378 (1043)
.++.+.+...|++++...|++.+.|...+..+...|++++|...|++|++. .++.+.+|+.+|... ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 356788999999999999999999999999999999999999999999987 788899999999964 67777 59999
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.+|+++++ ..|+....+...+....+.|+++.|...|+++++.
T Consensus 131 ~~l~~al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALA-LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999996 46667888888888888999999999999999997
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=2.6e-06 Score=105.13 Aligned_cols=148 Identities=14% Similarity=0.001 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
|+..+....+++.+...|..+++..+|++|+..+|++...++.|+..+.+.+.+++|+..+++++.. .|+++...+..|
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence 5667888888999999999999999999999999999999999999999999999999999999988 888899999999
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar 441 (1043)
......|.+++|..+|++++. ..++....|+.|+.+.+..|..++|...|++|++.+. ++ .+-|.+++-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-----~~-~~~~~~~~~ 230 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-----DG-ARKLTRRLV 230 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----cc-hHHHHHHHH
Confidence 999999999999999999996 5667788999999999999999999999999999853 22 355555543
No 88
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.54 E-value=1.3e-07 Score=100.76 Aligned_cols=108 Identities=13% Similarity=0.235 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA-RLCSIDKVVEVFERAV 100 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~-~~~~~e~a~~lfeRAL 100 (1043)
.+..|-+.....|.|++.|..|+....+. +...++..||-.+|..+|+++++|.-.+.+|. ..++++.+|.+|.+||
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 34456677788999999999999988876 78889999999999999999999999888875 4589999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~ 137 (1043)
+.+|.++.||.+|.++++.. .-+++.|.++.
T Consensus 170 R~N~~~p~iw~eyfr~El~y------iTKL~~R~~Kt 200 (435)
T COG5191 170 RMNSRSPRIWIEYFRMELMY------ITKLINRREKT 200 (435)
T ss_pred ccCCCCchHHHHHHHHHHHH------HHHHHhhHHHH
Confidence 99999999999999998765 56677766543
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=2.6e-06 Score=85.09 Aligned_cols=120 Identities=9% Similarity=0.032 Sum_probs=102.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 23 KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 23 ~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
...|+++|..+|.+ |..+...+... ++++.+...|++++...|.+...|...+......|++++|...|++|+..
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46899999999986 33333334444 88999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 001619 103 ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKY 151 (1043)
Q Consensus 103 ~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~y 151 (1043)
.|.+++.|...+..+... |+.++|+..|++|++..|.+ ...|...
T Consensus 88 ~p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~---~~~~~~~ 132 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYAD---ASWSEIR 132 (144)
T ss_pred CCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC---hHHHHHH
Confidence 999999999999988887 99999999999999988874 3455443
No 90
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.51 E-value=4.1e-06 Score=95.02 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=122.7
Q ss_pred HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD------------FDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1043)
Q Consensus 267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~------------~e~~~~lyerAl~~~~~~~~LWl~yAk~~e 334 (1043)
...|++.++ .+|++++.|+.|++|-.+.-. .++-..+|+|||..+|+...||+.|.+...
T Consensus 5 ~~el~~~v~--------~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 5 TAELNRRVR--------ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHHH--------hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666665 469999999999999765321 457788999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH---hCCHHHHHHHHHhhhhCC-----------------ChhhHH
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ---IGDTSAARAAFPESYIDS-----------------DSRFIE 394 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~---~g~~d~Ar~ll~ral~~~-----------------~~~~~~ 394 (1043)
+..+.+.....+++++.. .+..+.+|..|.+|... .-.++..+.+|.+++... ....+.
T Consensus 77 ~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~ 155 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLY 155 (321)
T ss_pred HhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 988999999999999987 67788999999999876 346889999999987521 013467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 395 KVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 395 lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
++..++.|++..|..+.|..+++-.++.
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8889999999999999999999999997
No 91
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=0.00039 Score=75.47 Aligned_cols=266 Identities=13% Similarity=0.066 Sum_probs=169.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHH--HHHHHH
Q 001619 78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWD--KYIEFE 155 (1043)
Q Consensus 78 ~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~--~yi~fe 155 (1043)
+=+++..+ ...++|..+|-..+...|..+++=+.+.++.... |.+++|.++-.--++.-..++. .++-. ...+=.
T Consensus 41 ~GlNfLLs-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~-qr~lAl~qL~~Dy 117 (389)
T COG2956 41 KGLNFLLS-NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFE-QRLLALQQLGRDY 117 (389)
T ss_pred hHHHHHhh-cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHH
Confidence 33444433 3578999999999999999999999999988877 8888888887655554443331 22111 111112
Q ss_pred HHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcC
Q 001619 156 ISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLD 235 (1043)
Q Consensus 156 ~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~ 235 (1043)
+..|-+++|..+|...+..+...... +.. .+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~A--------lqq------------------------------------Ll----- 148 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGA--------LQQ------------------------------------LL----- 148 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHH--------HHH------------------------------------HH-----
Confidence 23566677777766665543211000 000 00
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHH---HHHHHHHHHHHHcCChHHHHHHH
Q 001619 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQL---KNWHDYLSFAEKQGDFDWVVKLY 312 (1043)
Q Consensus 236 ~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~---~~W~~yi~~e~~~g~~e~~~~ly 312 (1043)
.|| ..+.-|++|.+...++.. .- -.+.++ ..+..++.-..-..+.++++.++
T Consensus 149 ---------~IY----Q~treW~KAId~A~~L~k---~~---------~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 149 ---------NIY----QATREWEKAIDVAERLVK---LG---------GQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred ---------HHH----HHhhHHHHHHHHHHHHHH---cC---------CccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 000 011223333333322211 00 112223 34555555555567899999999
Q ss_pred HHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhh
Q 001619 313 ERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF 392 (1043)
Q Consensus 313 erAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~ 392 (1043)
+||+..++++...=+..++.+...|++..|.+.|+++.+.-....++|.-...+.+...|+.+..+..+.+++.....
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-- 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-- 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence 999999999999999999999999999999999999998722234566666677778899999999999999864332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 393 IEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 393 ~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.+-...+++.+.....+.|.....+-+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 334444556667777788888888777776
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00063 Score=78.52 Aligned_cols=400 Identities=11% Similarity=0.081 Sum_probs=204.1
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER 98 (1043)
Q Consensus 19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeR 98 (1043)
+++.+..|.++|..+|.+--.+..-...+-+. +.+.++-.=-.+..+.+|.-.+-|.+......-+|+|++|+..|++
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 56678889999999999665555544444444 6777777778888999999999999999988889999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh--hhHHHHHHHHhcCCC
Q 001619 99 AVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW--SSLAQIFVQTLRFPS 176 (1043)
Q Consensus 99 AL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~--e~a~~iy~raL~~p~ 176 (1043)
+|+..|.+.-|-..+...... .+ ++ +.-+.+..+|...........-. ...++++...-+.|.
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~----------~~-~~----~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLE----------DY-AA----DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhH----------HH-Hh----hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999998888776665310 00 11 22233567887776654432211 111222211111221
Q ss_pred ccHHHHH--HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccc------cCccchhhhHHHHhhcCCchhhHHHHHHHH
Q 001619 177 KKLHHYY--DSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP------AYYKDDETSSVIKDLLDPSVDLVRSKAIQK 248 (1043)
Q Consensus 177 ~~l~~~~--~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~------~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~ 248 (1043)
. +-.+. .........+. .... ......+... .....-+....+.+..+.....+.++....
T Consensus 161 ~-l~~~l~d~r~m~a~~~l~---~~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 161 S-LKLYLNDPRLMKADGQLK---GVDE-------LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred h-hhcccccHHHHHHHHHHh---cCcc-------ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 1 11111 01111111100 0000 0000000000 000000000000000000000001111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHH-
Q 001619 249 YRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWM- 327 (1043)
Q Consensus 249 ~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl- 327 (1043)
+....|. .+....+...|..+|. ++ .+..........+...|.+.+++.+-+.|+......-....
T Consensus 230 ---lgnaayk-kk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 230 ---LGNAAYK-KKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred ---HHHHHHH-hhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH
Confidence 0001111 1111122222222221 22 23333333333333344444555444444432111111111
Q ss_pred ------HHHHHHHHcCChHHHHHHHHHHHHHHhc-c---------------------cchH---HHHHHHHHHHhCCHHH
Q 001619 328 ------RYVDFMESKGGREIASYALDRATQIFLK-R---------------------LPVI---HLFNARYKEQIGDTSA 376 (1043)
Q Consensus 328 ------~yAk~~e~~g~~e~Ar~ilerA~~~~~~-~---------------------~p~i---wl~~A~~E~~~g~~d~ 376 (1043)
+.++.+.+.++.+.|+..|.+++..+.. + .|+. --.-+.-.++.|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 1112233335566777777776654321 0 0111 0111222345789999
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCC
Q 001619 377 ARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGG 456 (1043)
Q Consensus 377 Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~ 456 (1043)
|.+.|.+||+. .|+..++|...+-...++|++..|.+-.+++|++ .|.+.+.|+..+.-. .+.++
T Consensus 377 Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al-----~~mk~--- 441 (539)
T KOG0548|consen 377 AVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAAL-----RAMKE--- 441 (539)
T ss_pred HHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHH-----HHHHH---
Confidence 99999999964 5777889999988889999999999999999998 777788876553221 11222
Q ss_pred CchHHHHHHHHHHHhhcCCCc
Q 001619 457 RSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 457 ~~~leraR~l~erAl~~~p~~ 477 (1043)
.+.+-..|..++..+|++
T Consensus 442 ---ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 442 ---YDKALEAYQEALELDPSN 459 (539)
T ss_pred ---HHHHHHHHHHHHhcCchh
Confidence 334667888888877765
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.48 E-value=0.00018 Score=82.72 Aligned_cols=99 Identities=14% Similarity=-0.019 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc----hHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP----VIH 361 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p----~iw 361 (1043)
|.....+..++..+...|+++++..+|++++...|+...++..++..+...|++++|+..|++++... +..+ .+|
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~~~ 189 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNW 189 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCCcchhHHHH
Confidence 33333333334444455666666666666666656555556666665555666666666666555441 1111 123
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhhh
Q 001619 362 LFNARYKEQIGDTSAARAAFPESY 385 (1043)
Q Consensus 362 l~~A~~E~~~g~~d~Ar~ll~ral 385 (1043)
..++.+....|++++|+.+|++++
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 334444444555555555554443
No 94
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=4.8e-05 Score=85.94 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHH
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSATYSVDVWFH 112 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~~~P~s~~LWl~ 112 (1043)
+.-.++|..+-..+... +..+++..+++++|..+|..+..|..........+ .++++...+++++..+|++..+|..
T Consensus 34 ~~~~~a~~~~ra~l~~~--e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 34 PEFREAMDYFRAVYASD--ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 33344554444444444 56788999999999999999999988877777776 5789999999999999999999987
Q ss_pred HHHHHHhhCCC--hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619 113 YCSLSMSTFED--PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177 (1043)
Q Consensus 113 Y~~~~~~~~~~--~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~ 177 (1043)
..-++... +. .+.+...+++|+..-|. ....|..-.-.....+.++.+...+.++|++...
T Consensus 112 R~~~l~~l-~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 112 RRWLAEKL-GPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHc-CchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 76555444 33 25667778888876665 3457766665555566677777777777665433
No 95
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.0011 Score=72.13 Aligned_cols=266 Identities=15% Similarity=0.144 Sum_probs=166.8
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHH-HHHHHHHH
Q 001619 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYY-DSFKKLAG 191 (1043)
Q Consensus 113 Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~-~~y~~~~~ 191 (1043)
=++|++.. ..++|..+|-..++.-+.+ .+.=.....+..+.|..++|.+|-.-.+.-|....+... +.+.- .
T Consensus 42 GlNfLLs~--Q~dKAvdlF~e~l~~d~~t---~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL-~- 114 (389)
T COG2956 42 GLNFLLSN--QPDKAVDLFLEMLQEDPET---FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL-G- 114 (389)
T ss_pred HHHHHhhc--CcchHHHHHHHHHhcCchh---hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH-H-
Confidence 34566653 7788888888877744443 355567788888899999999998888887654322111 10000 0
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001619 192 AWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFE 271 (1043)
Q Consensus 192 ~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE 271 (1043)
+||+ .+|-++||..++...
T Consensus 115 ---------------------------------------~Dym-~aGl~DRAE~~f~~L--------------------- 133 (389)
T COG2956 115 ---------------------------------------RDYM-AAGLLDRAEDIFNQL--------------------- 133 (389)
T ss_pred ---------------------------------------HHHH-HhhhhhHHHHHHHHH---------------------
Confidence 0010 112233333333211
Q ss_pred HHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHcCChHHHHHHH
Q 001619 272 NLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD-----YPEFWMRYVDFMESKGGREIASYAL 346 (1043)
Q Consensus 272 ~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~-----~~~LWl~yAk~~e~~g~~e~Ar~il 346 (1043)
+.. ...-...-..++.++....+.++|+.+-++.++..+. -..+++.+|.-+.-..+++.|+..+
T Consensus 134 --~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 134 --VDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred --hcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 100 0001122233344444444555566666666654332 2466888888888888999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 347 DRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 347 erA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~-~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
.||+.. .|+|...-+..++++...|++.+|.+.+++.+.. .+.++ ++.-........+|..++.+..+.++++.
T Consensus 204 ~kAlqa-~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--- 278 (389)
T COG2956 204 KKALQA-DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--- 278 (389)
T ss_pred HHHHhh-CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---
Confidence 999988 7788888889999999999999999999999864 45554 34444445556779999999999999996
Q ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC
Q 001619 426 QRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPD 476 (1043)
Q Consensus 426 ~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~ 476 (1043)
+++.. +- +...+++....+ ++.|..++-+-|...|+
T Consensus 279 ---~~g~~-~~--------l~l~~lie~~~G---~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 279 ---NTGAD-AE--------LMLADLIELQEG---IDAAQAYLTRQLRRKPT 314 (389)
T ss_pred ---cCCcc-HH--------HHHHHHHHHhhC---hHHHHHHHHHHHhhCCc
Confidence 33322 11 112333333333 34688888888887776
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=4.4e-06 Score=83.39 Aligned_cols=111 Identities=11% Similarity=-0.049 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
++|+. |..++......|+++++...|.+++...|.....|...+..+...|++++|...|++|+.. .|+.+..|+.
T Consensus 22 ~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQ 97 (144)
T ss_pred cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHH
Confidence 45664 5555666667899999999999999999999999999999999999999999999999976 7888899999
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFK 399 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~ 399 (1043)
++......|++++|+..|.+++.. .|+....|...
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~-~p~~~~~~~~~ 132 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIR 132 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence 999999999999999999999863 45555555443
No 97
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.43 E-value=3.5e-05 Score=91.10 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc------
Q 001619 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP--------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK------ 355 (1043)
Q Consensus 290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~--------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~------ 355 (1043)
..-..++.++...++++.+..+|++|+.. ++....+..+.+..|-+.|++++|+..++||++++.+
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 34445788888899999999999999963 4666788999999999999999999999999998654
Q ss_pred -ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Q 001619 356 -RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-------DSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQR 427 (1043)
Q Consensus 356 -~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-------~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~ 427 (1043)
..+......+......+.++.|..+|.++++.. .+....+...++.+....|.+++|+++|++||.......
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 223456666777788899999999998887621 124456888889999999999999999999999865432
Q ss_pred c--CCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC----CCccccCChhhHHHHHHHHHHHHHHcC
Q 001619 428 K--FHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSR----PDVLKVFSLEDVEDISSLYLQFLDLCG 501 (1043)
Q Consensus 428 ~--~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~----p~~~~~l~~~~~~~l~~lwl~fee~~G 501 (1043)
. .+. ++..+|.....+++... .+.|-.+|++++.-. |+. -+....+.--+..-+..|
T Consensus 402 ~~~~~~-------~~~~l~~la~~~~~~k~----~~~a~~l~~~~~~i~~~~g~~~------~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 402 GKKDYG-------VGKPLNQLAEAYEELKK----YEEAEQLFEEAKDIMKLCGPDH------PDVTYTYLNLAALYRAQG 464 (508)
T ss_pred cCcChh-------hhHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHhCCCC------CchHHHHHHHHHHHHHcc
Confidence 2 111 12233332233322211 223455555554321 222 112233334444446679
Q ss_pred CHHHHHHHHHHHHhhC
Q 001619 502 TIHDIRNAWNQHIKLF 517 (1043)
Q Consensus 502 ~~~~a~~~~~ra~k~~ 517 (1043)
+.+.|.++..+++..-
T Consensus 465 ~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 465 NYEAAEELEEKVLNAR 480 (508)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999998888653
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=1.2e-05 Score=99.48 Aligned_cols=147 Identities=8% Similarity=-0.049 Sum_probs=134.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P 104 (1043)
.+...+++.|.+.++...+++..... +..+++..++++++...|.+...|..++....+.+.+++|...++++|...|
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~--g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAA--HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 45556778899999999999987777 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619 105 YSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177 (1043)
Q Consensus 105 ~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~ 177 (1043)
.+...-..++..+... +.+++|..+|+|++...|. ....|..|....+..|..+.|...|++++..-..
T Consensus 152 ~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~---~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 152 SSAREILLEAKSWDEI-GQSEQADACFERLSRQHPE---FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999999888 9999999999999984443 5689999999999999999999999999875433
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=9e-06 Score=79.74 Aligned_cols=115 Identities=13% Similarity=0.225 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619 24 QGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSA 103 (1043)
Q Consensus 24 ~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~ 103 (1043)
+.|+++|..+|.+...-..++..+... ++.+++...|++++..+|.+...|...+......+++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999988777766666555 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1043)
Q Consensus 104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~ 141 (1043)
|.+++.|..++.+.... ++.+.|...|+++++..|.+
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccc
Confidence 99999999999888877 89999999999999988764
No 100
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=6.8e-05 Score=84.75 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNAR 366 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g-~~e~Ar~ilerA~~~~~~~~p~iwl~~A~ 366 (1043)
-.++|--+-..+...+..++|..+++++|..+|.+..+|......+...| ++++|...+++++.. .+++..+|.....
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~ 114 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHH
Confidence 33444444445555778899999999999999999999999999998888 689999999999987 6677778887777
Q ss_pred HHHHhCCH--HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619 367 YKEQIGDT--SAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1043)
Q Consensus 367 ~E~~~g~~--d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~ 444 (1043)
+..+.|.. +++..++.+++. ..++...+|....-+...+|.++++.+.++++|+. .+.....|.......
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~-~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl- 186 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILS-LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVI- 186 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHH-
Confidence 77777763 788999999996 46777889999988999999999999999999997 666666664432111
Q ss_pred HHHHHHHHHhCCC-chHHHHHHHHHHHhhcCCCc
Q 001619 445 TELIKFTMVHGGR-SHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 445 ~~~~~fe~~~g~~-~~leraR~l~erAl~~~p~~ 477 (1043)
.++. ..|+. ..++..-..+.++|..+|++
T Consensus 187 ---~~~~-~l~~~~~~~e~el~y~~~aI~~~P~N 216 (320)
T PLN02789 187 ---TRSP-LLGGLEAMRDSELKYTIDAILANPRN 216 (320)
T ss_pred ---Hhcc-ccccccccHHHHHHHHHHHHHhCCCC
Confidence 1110 01221 12345667778999999987
No 101
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=5.1e-05 Score=81.90 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-------CCCH-HH-HHH-HHHHHHHcCCHHHHHHHHHHHHHhc
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEF-------PLCY-GY-WRK-YADHKARLCSIDKVVEVFERAVQSA 103 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~-------P~s~-~l-W~~-y~~~e~~~~~~e~a~~lfeRAL~~~ 103 (1043)
|.-++....|+-+.+ +|+.++.......++.. -..+ +. |+. ..+...++|-+.+|.+-|..+|+..
T Consensus 178 p~l~kaLFey~fyhe----nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~ 253 (478)
T KOG1129|consen 178 PTLVKALFEYLFYHE----NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF 253 (478)
T ss_pred hHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC
Confidence 344555555665555 46666553333322211 1122 33 332 3445667788889999999999986
Q ss_pred CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 104 TYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 104 P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
| +++-++-+.+...+. +.++.|..+|...|+..|.+. .+-...++.-+.-++.+.+.++|++.++..
T Consensus 254 ~-~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~V---T~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 254 P-HPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDV---TYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred C-chhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchh---hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 6 788877777777666 788889999999999888753 344444555555667788888888888753
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=0.0012 Score=80.69 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN 364 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~ 364 (1043)
..++...|..+.-+ ...|++.-+...|-+++...|.....|.+++.....+.|++-|..+|.++..+ .|.+-.-|+.-
T Consensus 813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~ 890 (1238)
T KOG1127|consen 813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGE 890 (1238)
T ss_pred hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHH
Confidence 34566677666544 32356777777777777777777777777777777777777777777777655 44555567777
Q ss_pred HHHHHHhCCHHHHHHHHHh
Q 001619 365 ARYKEQIGDTSAARAAFPE 383 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~r 383 (1043)
|.+-+..|++-++..+|..
T Consensus 891 Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 891 ALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 7777777777777777766
No 103
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=98.30 E-value=1.6e-06 Score=106.47 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.9
Q ss_pred CcccCCCCCccc
Q 001619 800 NWHEQQNPDRVH 811 (1043)
Q Consensus 800 n~~~~~~~~~~~ 811 (1043)
..|+++..+.++
T Consensus 1963 ~vhq~~p~~~~~ 1974 (2220)
T KOG3598|consen 1963 KVHQRNPLNRKK 1974 (2220)
T ss_pred ceeecCcchHHH
Confidence 355555555544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=4.2e-05 Score=88.62 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=141.7
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhh
Q 001619 84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSS 163 (1043)
Q Consensus 84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~ 163 (1043)
++.|++.+|.-+||-||...|.+.+.|..+...-..+ ++...|...|.||++.-|.... .+-.+.+.+.. .|.-..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl~LdP~Nle--aLmaLAVSytN-eg~q~~ 371 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCLELDPTNLE--ALMALAVSYTN-EGLQNQ 371 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHHhcCCccHH--HHHHHHHHHhh-hhhHHH
Confidence 4567889999999999999999999999888776666 6677799999999987776431 22222222221 222233
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccc--cCccchhhhHHHHhhcCCchhhH
Q 001619 164 LAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVP--AYYKDDETSSVIKDLLDPSVDLV 241 (1043)
Q Consensus 164 a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~--~~~~~~e~~~~i~~~~~~~~~~e 241 (1043)
|.+.+.+.|...+...+ +.. .-.++... ..+.+.. .
T Consensus 372 Al~~L~~Wi~~~p~y~~---------l~~------------------a~~~~~~~~~~s~~~~~-------------~-- 409 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVH---------LVS------------------AGENEDFENTKSFLDSS-------------H-- 409 (579)
T ss_pred HHHHHHHHHHhCccchh---------ccc------------------cCccccccCCcCCCCHH-------------H--
Confidence 44444444321110000 000 00000000 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCh--HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 001619 242 RSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDD--IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC 319 (1043)
Q Consensus 242 ~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p--~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~ 319 (1043)
+.+..+.+ -.+.+ ..| .+.++-..+.-++-..|++++++..|+-||...
T Consensus 410 ---------------l~~i~~~f------Leaa~--------~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~ 460 (579)
T KOG1125|consen 410 ---------------LAHIQELF------LEAAR--------QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK 460 (579)
T ss_pred ---------------HHHHHHHH------HHHHH--------hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence 00001111 11111 112 234555555555555789999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 320 ~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
|....||-++.-.+......++|...|.||+.+ .|.+-.+|...+--....|.|++|.+-|-.|+.
T Consensus 461 Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 461 PNDYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999998878899999999999997 555556666666666778888888888888875
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.23 E-value=0.0013 Score=78.88 Aligned_cols=292 Identities=11% Similarity=0.076 Sum_probs=169.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHH
Q 001619 26 LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA-----RLCSIDKVVEVFERAV 100 (1043)
Q Consensus 26 le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~-----~~~~~e~a~~lfeRAL 100 (1043)
|++......+.+..-...++.+-+. |..+++..+|+..|..+|.+..+...+..... ...+.+....+|+..-
T Consensus 27 L~~~~~~I~Dk~~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~ 104 (517)
T PF12569_consen 27 LEKNEKQILDKLAVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELA 104 (517)
T ss_pred HHhhhhhCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHH
Confidence 3333333344444444446666667 89999999999999999999999999988762 1235778888999888
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccH
Q 001619 101 QSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKL 179 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~-lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l 179 (1043)
...|.+.-+=..=+.|.... .-.+.+...+.+.|+. +| .+......+.........+..|+...
T Consensus 105 ~~yp~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~-------- 169 (517)
T PF12569_consen 105 EKYPRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP------SLFSNLKPLYKDPEKAAIIESLVEEY-------- 169 (517)
T ss_pred HhCccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc------hHHHHHHHHHcChhHHHHHHHHHHHH--------
Confidence 88887654322222222100 0012233333333332 22 23222222222111111111121111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCcc-chhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH
Q 001619 180 HHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYK-DDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYK 258 (1043)
Q Consensus 180 ~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~-~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~ 258 (1043)
...+. ..+.+...-+ ..+.. .+ .+.. .......|+
T Consensus 170 ----------~~~l~------------------~~~~~~~~~~~~~~~p--------------~~-~lw~-~~~lAqhyd 205 (517)
T PF12569_consen 170 ----------VNSLE------------------SNGSFSNGDDEEKEPP--------------ST-LLWT-LYFLAQHYD 205 (517)
T ss_pred ----------HHhhc------------------ccCCCCCccccccCCc--------------hH-HHHH-HHHHHHHHH
Confidence 11100 0000000000 00000 00 0000 011233344
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCC
Q 001619 259 EASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG 338 (1043)
Q Consensus 259 ~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~ 338 (1043)
..+....++..++++|. .+|+.++++..-+.+++..|++..|...++.|-......--|=...++++.+.|+
T Consensus 206 ~~g~~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGR 277 (517)
T ss_pred HhCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCC
Confidence 44455556666777775 5689999999999999999999999999999999888888888899999999999
Q ss_pred hHHHHHHHHHHHHHHh---cccc---hHHH--HHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 339 REIASYALDRATQIFL---KRLP---VIHL--FNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 339 ~e~Ar~ilerA~~~~~---~~~p---~iwl--~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
+++|..++..-++.-. .+.- -+|+ +.|+-..|.|++..|.+-|....+
T Consensus 278 ~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998865443210 0111 2444 456777899999999888776654
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=6e-05 Score=81.35 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=155.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
+-..++.+-+...|+.+|. ++.+.-+.+...+.+..+.|..+|...|..+|..|.+-+.-++..... ++.+++.++|+
T Consensus 237 gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam-~~~~~a~~lYk 314 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM-EQQEDALQLYK 314 (478)
T ss_pred cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH-HhHHHHHHHHH
Confidence 5667788899999999986 667777777777778899999999999999999999999999987777 78999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i 212 (1043)
++++.-+.+.++.. -+..--|. -++.|.|.+.|+|.|..-...-+ .|+. |. .++ +
T Consensus 315 ~vlk~~~~nvEaiA-cia~~yfY--~~~PE~AlryYRRiLqmG~~spe----Lf~N--------ig--------LCC-~- 369 (478)
T KOG1129|consen 315 LVLKLHPINVEAIA-CIAVGYFY--DNNPEMALRYYRRILQMGAQSPE----LFCN--------IG--------LCC-L- 369 (478)
T ss_pred HHHhcCCccceeee-eeeecccc--CCChHHHHHHHHHHHHhcCCChH----HHhh--------HH--------HHH-H-
Confidence 99998777543100 00000011 25678899999999874322111 1111 00 000 0
Q ss_pred hccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHH
Q 001619 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1043)
Q Consensus 213 ~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W 292 (1043)
-+...+..+..|++++... .......++|
T Consensus 370 ----------------------------------------------yaqQ~D~~L~sf~RAlsta-----t~~~~aaDvW 398 (478)
T KOG1129|consen 370 ----------------------------------------------YAQQIDLVLPSFQRALSTA-----TQPGQAADVW 398 (478)
T ss_pred ----------------------------------------------hhcchhhhHHHHHHHHhhc-----cCcchhhhhh
Confidence 0011122233455544211 0123445788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.++......-||+..+...|.-||..++++.+...+.+-+..+.|+++.||.+|.-|..+
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887766666788999999999999988999888899998888899999999999888766
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=2.3e-05 Score=76.84 Aligned_cols=111 Identities=14% Similarity=-0.072 Sum_probs=89.9
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC
Q 001619 310 KLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD 389 (1043)
Q Consensus 310 ~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~ 389 (1043)
.+|++++...|+....-+.++..+...|++++|...|++++.. .+..+.+|...+.+....|+++.|..+|.+++.. .
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 4678888888877777777777778888888888888888776 5667788888888888888888888888888753 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
++....|...+.+....|++++|...|+++++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777778888888888888888888886
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00032 Score=83.32 Aligned_cols=122 Identities=14% Similarity=0.022 Sum_probs=100.9
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
.++++.+...|++.+..++-....|..+.......++...|.+.|.|++.. -|+..+-|-..+....+.|.-.+|+..+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 577888888888888888888888888888888888888888888888876 6677778888888888888888888888
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
.+|++. ....+.+|..|+-+-...|.++.|.+.|.+.++..+.
T Consensus 577 ~EAlKc-n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 577 KEALKC-NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhc-CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 888863 4667788888888888888888888888888887543
No 109
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=98.19 E-value=1.1e-06 Score=107.76 Aligned_cols=8 Identities=13% Similarity=-0.080 Sum_probs=3.1
Q ss_pred chhccccC
Q 001619 824 KRQHQQRR 831 (1043)
Q Consensus 824 ~~~~q~~~ 831 (1043)
.+.+|+..
T Consensus 1990 ~glqqa~g 1997 (2220)
T KOG3598|consen 1990 AGLQQAMG 1997 (2220)
T ss_pred hhhhhccC
Confidence 33444433
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.00011 Score=91.75 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc------
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL------ 357 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~------ 357 (1043)
.+|.+..+|...+..+...++++.|..+.+.++..+|+...+|+..+-.+...++.++|..+ +++..+..+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 56899999999999998899999999999999999999999999999988888888877766 6666644332
Q ss_pred ------------chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 358 ------------PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 358 ------------p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
.......|.+..+.|+.++|..+|++++.- .++.+.+.-.||.+.... ++++|+.++.+|+...+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 134555678888999999999999999964 466666666777666666 999999999999999887
Q ss_pred hccCCccHHHHHHH
Q 001619 426 QRKFHTLPLLYVQF 439 (1043)
Q Consensus 426 ~~~~p~~~~l~~~~ 439 (1043)
...+...-.+|..+
T Consensus 182 ~kq~~~~~e~W~k~ 195 (906)
T PRK14720 182 KKQYVGIEEIWSKL 195 (906)
T ss_pred hhcchHHHHHHHHH
Confidence 77777667777666
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=7.3e-05 Score=80.86 Aligned_cols=138 Identities=8% Similarity=0.036 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH-
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV- 109 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L- 109 (1043)
+.....+...+..+... ++.+.+...|++++..+|.+. ..|...+......+++++|..+|+++++..|.+..+
T Consensus 30 ~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDS--GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 44455555555444444 556666666666666666554 345555555555566666666666666666655542
Q ss_pred --HHHHHHHHHhh-------CCChHHHHHHHHHHHHhcCCCCCcHHHH--------------HHHHHHHHHhhhhhhHHH
Q 001619 110 --WFHYCSLSMST-------FEDPNDVRRLFKRALSFVGKDYLCHTMW--------------DKYIEFEISQQRWSSLAQ 166 (1043)
Q Consensus 110 --Wl~Y~~~~~~~-------~~~~e~ar~lferAL~~lp~~~~s~~IW--------------~~yi~fe~~~~~~e~a~~ 166 (1043)
|...+...... .++.+.|.+.|+++++.-|.+....... ...+.+....|++..+..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 22222222110 0234556666666666555432111100 122344445566666666
Q ss_pred HHHHHhc
Q 001619 167 IFVQTLR 173 (1043)
Q Consensus 167 iy~raL~ 173 (1043)
.|.+++.
T Consensus 188 ~~~~al~ 194 (235)
T TIGR03302 188 RFETVVE 194 (235)
T ss_pred HHHHHHH
Confidence 6666654
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.0054 Score=73.40 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------C--C------------CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------C--A------------DYPEFWMRYVDFMESKGGREIASYALD 347 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------~--~------------~~~~LWl~yAk~~e~~g~~e~Ar~ile 347 (1043)
..+|.=+..|++..|+.+.|+.+|+.|--. | + .....-+..|+.||..|++-+|...|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 356666677888899999999999998632 1 1 122346677888999999999999998
Q ss_pred HHHHHH-----hccc---chHH-----------HHHHHHHHHh-CCHHHHHHHHHhhh
Q 001619 348 RATQIF-----LKRL---PVIH-----------LFNARYKEQI-GDTSAARAAFPESY 385 (1043)
Q Consensus 348 rA~~~~-----~~~~---p~iw-----------l~~A~~E~~~-g~~d~Ar~ll~ral 385 (1043)
||-... ++.+ ..+| ...|.|.+.. |++++|..+|.+|-
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 875421 1211 1122 2244554444 48899999998873
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.026 Score=66.20 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 001619 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS-ATYSVDVWFHYCSL 116 (1043)
Q Consensus 38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~-~P~s~~LWl~Y~~~ 116 (1043)
.+|..+=.+.. . ++++++..+..+.|...|+.....+.-+-..+..+.|++|.++.++-... ...+.-+=.+||.|
T Consensus 14 ~l~t~ln~~~~-~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK-N--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc-c--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 55666544333 3 78999999999999999999987776666667777888888776654432 12233366788877
Q ss_pred HHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCc
Q 001619 117 SMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSK 177 (1043)
Q Consensus 117 ~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~ 177 (1043)
-. +..+.|.+.++ +.+.....+-..++...-+.++++.+..||+..++....
T Consensus 91 rl---nk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 91 RL---NKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred Hc---ccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 44 45777777776 222223457777888888899999999999999875433
No 114
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.13 E-value=0.022 Score=64.02 Aligned_cols=319 Identities=14% Similarity=0.029 Sum_probs=206.3
Q ss_pred HHHHHHhCCCCHHHHHHH----------HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001619 26 LEEFIAEGSLDFDEWTSL----------LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95 (1043)
Q Consensus 26 le~~i~~nP~d~~~W~~~----------i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~l 95 (1043)
+-..|..-|.....|.+. .+-+.+..+|++.++.+...|.-+.-+...-..+..++..-..|+++++...
T Consensus 61 ~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~y 140 (400)
T COG3071 61 LLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRY 140 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 344556778888888873 2223333458899998888888888888777777777777777899999999
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619 96 FERAVQSATY-SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 96 feRAL~~~P~-s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~ 174 (1043)
+.+|-+.-++ ..-.-+..++.+... +++..||.-.+.+++.-|. ..++-....+.....|++..+-++....-+-
T Consensus 141 L~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 141 LAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 9999998332 234455556666666 8888999999998887665 4466666667667777777777666655432
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 001619 175 PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGE 254 (1043)
Q Consensus 175 p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~ 254 (1043)
-..+ ...+..|+...-. ..+.+... +. ....+.+|
T Consensus 217 ~~l~-~~e~~~le~~a~~-------------glL~q~~~---------~~-~~~gL~~~--------------------- 251 (400)
T COG3071 217 GLLS-DEEAARLEQQAWE-------------GLLQQARD---------DN-GSEGLKTW--------------------- 251 (400)
T ss_pred cCCC-hHHHHHHHHHHHH-------------HHHHHHhc---------cc-cchHHHHH---------------------
Confidence 1110 1111112111100 00000000 00 00001111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 001619 255 QIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFME 334 (1043)
Q Consensus 255 ~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e 334 (1043)
|+. .-..+ .++..+=..|+..+...|+.+.|..+.+.+++..-+.. -+.++.+ .
T Consensus 252 --W~~----------~pr~l-----------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~-l 305 (400)
T COG3071 252 --WKN----------QPRKL-----------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPR-L 305 (400)
T ss_pred --HHh----------ccHHh-----------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhh-c
Confidence 100 00011 12344556777777788999999999999998754443 2222222 1
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~ 414 (1043)
.-++.+.-.+..++.++. .++.|.+|...+.+..+++.+.+|...|+.|++.... ..-|...++.....|....|-.
T Consensus 306 ~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHH
Confidence 346777777788888876 6788899999999999999999999999999875333 3446666677788899999999
Q ss_pred HHHHHHHH
Q 001619 415 TYKEALET 422 (1043)
Q Consensus 415 lyekale~ 422 (1043)
++++++-.
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99999965
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00077 Score=71.13 Aligned_cols=186 Identities=13% Similarity=0.201 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhh--CCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhh
Q 001619 87 CSIDKVVEVFERAVQSATYS---VDVWFHYCSLSMST--FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRW 161 (1043)
Q Consensus 87 ~~~e~a~~lfeRAL~~~P~s---~~LWl~Y~~~~~~~--~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~ 161 (1043)
.+.+++..+++.-+...+.. .++|.-|=...+-- .+..+.|...+++-.+..|. |.++=..++-+.+..|.+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~---S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG---SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhch
Confidence 46778888888777765544 68898886654321 15667789999988888876 778999999999999999
Q ss_pred hhHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHhhcCCchhh
Q 001619 162 SSLAQIFVQTLRF-PSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240 (1043)
Q Consensus 162 e~a~~iy~raL~~-p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~ 240 (1043)
+.|..+|++.|.- |++.. .|+..+.. ... .++..
T Consensus 103 ~~A~e~y~~lL~ddpt~~v-----~~KRKlAi--------------------lka--------------------~GK~l 137 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTV-----IRKRKLAI--------------------LKA--------------------QGKNL 137 (289)
T ss_pred hhHHHHHHHHhccCcchhH-----HHHHHHHH--------------------HHH--------------------cCCcH
Confidence 9999999999974 43321 11111100 000 00001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 001619 241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCA 320 (1043)
Q Consensus 241 e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~ 320 (1043)
+..+.+-+| ++ .++.+.++|....+++...|+++.|...||+++...|
T Consensus 138 ~aIk~ln~Y------------------------L~--------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 138 EAIKELNEY------------------------LD--------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHH------------------------HH--------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 111111111 01 3567889999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHH
Q 001619 321 DYPEFWMRYVDFMESKG---GREIASYALDRATQI 352 (1043)
Q Consensus 321 ~~~~LWl~yAk~~e~~g---~~e~Ar~ilerA~~~ 352 (1043)
..+-+..+||..+...| +++-||+.|+||+++
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999877666 578899999999987
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.0016 Score=81.59 Aligned_cols=123 Identities=17% Similarity=0.119 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--c---cchHHHHHHHH
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--R---LPVIHLFNARY 367 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~---~p~iwl~~A~~ 367 (1043)
..++..+.+.|..+++..+|+++|...|+.+.+--.||.++... ++++|+..+.+|+..+.. . ...+|..+..+
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 34455556677777777788888777777777777777777766 777888777777776542 1 12344444333
Q ss_pred HHHhCCHHHHHHHHHhhhhCCC-hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 368 KEQIGDTSAARAAFPESYIDSD-SR----FIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 368 E~~~g~~d~Ar~ll~ral~~~~-~~----~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
. ..+++--..+.++.+.... .. ...+|-.| +..++++.+..+++++|+.
T Consensus 199 ~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y----~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 199 N--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY----KALEDWDEVIYILKKILEH 252 (906)
T ss_pred C--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHH----hhhhhhhHHHHHHHHHHhc
Confidence 2 2333333333333332111 11 12233333 3445677888888888876
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00042 Score=73.03 Aligned_cols=160 Identities=17% Similarity=0.076 Sum_probs=124.9
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
.|..+-|...+.+.-..+|.+..+=..+|.+++..|..++|..+|++.+.- .|.+..++....-+....|.--.|.+.+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-DPTDTVIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 566777888888877778999999999999999999999999999988764 3334456666666677788777888877
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Q 001619 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHIS 461 (1043)
Q Consensus 382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~le 461 (1043)
..-++.+..+ .+.|...+++....|.+++|.-.|++.+=. .|..+..+..+|...|. .|+..+++
T Consensus 144 n~YL~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt--------~gg~eN~~ 208 (289)
T KOG3060|consen 144 NEYLDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYT--------QGGAENLE 208 (289)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHH--------HhhHHHHH
Confidence 7777654443 678999999999999999999999998886 66666665555554442 25555688
Q ss_pred HHHHHHHHHhhcCCCc
Q 001619 462 IVDAVISNALYSRPDV 477 (1043)
Q Consensus 462 raR~l~erAl~~~p~~ 477 (1043)
.+|..|++|+..||.+
T Consensus 209 ~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 209 LARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHhChHh
Confidence 9999999999988854
No 118
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.07 E-value=4.4e-05 Score=74.17 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhccC---CCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhcc-----c---chHHHHHHHHHHH
Q 001619 306 DWVVKLYERCLIPC---ADYPEFWMRYVDFMESK----GGREIASYALDRATQIFLKR-----L---PVIHLFNARYKEQ 370 (1043)
Q Consensus 306 e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~----g~~e~Ar~ilerA~~~~~~~-----~---p~iwl~~A~~E~~ 370 (1043)
+..+.-||..|... .+.-++|++|+++.+.+ |....-..+++||+..|..+ . -.+|+.||++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 34566677777542 35567788888877764 34566677888888775432 1 157777776543
Q ss_pred hCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 371 IGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal 420 (1043)
.++++|.-+... ...++..+|..||.+.+..|++++|.+||.++|
T Consensus 81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 667777666542 233456678888888888888888888887775
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=0.00053 Score=74.12 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=113.1
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP---EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~---~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i 360 (1043)
.++.....+...+..+...|+++.+...|++++...|... ..|+..+..+...|+++.|...|+++++. .|+.+.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCch
Confidence 4556677788877777778888888888888887766543 57788888888888888888888888876 3444432
Q ss_pred ---HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHH
Q 001619 361 ---HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1043)
Q Consensus 361 ---wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~ 437 (1043)
|...+...... .....+..|+++.|.+.|+++++. +|.....+.
T Consensus 107 ~~a~~~~g~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~ 153 (235)
T TIGR03302 107 DYAYYLRGLSNYNQ---------------------------IDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHHh---------------------------cccccCCHHHHHHHHHHHHHHHHH------CCCChhHHH
Confidence 22222222221 000011123445555555555544 332222211
Q ss_pred HHHHHHH---------HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q 001619 438 QFSRLTY---------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRN 508 (1043)
Q Consensus 438 ~~ar~~~---------~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~ 508 (1043)
.+....+ .....+....|. ...|...+++++..+|+. ......+..-.......|+.+.|.+
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~------~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAINRFETVVENYPDT------PATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 1111000 011222223344 457889999999988764 1122334444555566799999999
Q ss_pred HHHHHHhhCCC
Q 001619 509 AWNQHIKLFPH 519 (1043)
Q Consensus 509 ~~~ra~k~~p~ 519 (1043)
.+....+.+|.
T Consensus 225 ~~~~l~~~~~~ 235 (235)
T TIGR03302 225 AAAVLGANYPD 235 (235)
T ss_pred HHHHHHhhCCC
Confidence 99888887763
No 120
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.06 E-value=6.5e-05 Score=72.98 Aligned_cols=108 Identities=18% Similarity=0.361 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHh
Q 001619 56 EMIGLVYDSFLAEFP---LCYGYWRKYADHKARL----CSIDKVVEVFERAVQSATY---------SVDVWFHYCSLSMS 119 (1043)
Q Consensus 56 ~~~r~vyeraL~~~P---~s~~lW~~y~~~e~~~----~~~e~a~~lfeRAL~~~P~---------s~~LWl~Y~~~~~~ 119 (1043)
+..+..||..|..+. +-...|..||+|.... +.-.....+++|++..+.. .++||+.|+++.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-- 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-- 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence 456778888888877 5578899999988765 3456788899999988644 368999999873
Q ss_pred hCCChHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619 120 TFEDPNDVRRLFKRALS-FVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1043)
Q Consensus 120 ~~~~~e~ar~lferAL~-~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL 172 (1043)
+.++.+|..... .+|.. ...+|..|+.+.+..|+++.|.+||.++|
T Consensus 80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 278999988776 45664 57999999999999999999999999885
No 121
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.04 E-value=0.013 Score=64.18 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRY 329 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~y 329 (1043)
..+.+...+...++...|+.+.......+||+.+|++...+-.|
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 34455555555565556666666666666666666554444433
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.0022 Score=76.51 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 001619 73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYI 152 (1043)
Q Consensus 73 ~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi 152 (1043)
.-+=+.++++..+.|-...|..+|||- .+|-.-+.++... |...+|..+..+-++.-| .+.+|....
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~l-g~~~kaeei~~q~lek~~----d~~lyc~LG 464 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLL-GQHGKAEEINRQELEKDP----DPRLYCLLG 464 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHh-cccchHHHHHHHHhcCCC----cchhHHHhh
Confidence 334456777788888888888888874 4455455444444 666677766666555222 457777777
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhccccccCccchhhhHHHHh
Q 001619 153 EFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKD 232 (1043)
Q Consensus 153 ~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~i~~ 232 (1043)
++.....-++.|..+++..-. + +.+.+.-.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sa-----------r------------------A~r~~~~~~-------------------- 495 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISA-----------R------------------AQRSLALLI-------------------- 495 (777)
T ss_pred hhccChHHHHHHHHHhhhhhH-----------H------------------HHHhhcccc--------------------
Confidence 776654434444433321100 0 000000000
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001619 233 LLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLY 312 (1043)
Q Consensus 233 ~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~ly 312 (1043)
.+...|.++ ...||..++ ++|-....|+.+.....+.++...+...|
T Consensus 496 -------------------~~~~~fs~~------~~hle~sl~--------~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 496 -------------------LSNKDFSEA------DKHLERSLE--------INPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred -------------------ccchhHHHH------HHHHHHHhh--------cCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 000112222 223444443 56888899999988777788999999999
Q ss_pred HHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 313 ERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 313 erAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
.+||...|+..+-|.+++.-+.+.|+..+|+..+.+|++- +.....||..|.-.-...|+++.|.++|.+.+..
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999975 4566789999999999999999999999999864
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.014 Score=70.13 Aligned_cols=21 Identities=43% Similarity=0.321 Sum_probs=16.8
Q ss_pred ccccccccccccccccccCCC
Q 001619 598 HDIRSDGAEVDILLSGEADSS 618 (1043)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~ 618 (1043)
+-.-|++++||...++++|+-
T Consensus 1395 ~~~Msd~~e~d~~~~~~add~ 1415 (1416)
T KOG3617|consen 1395 EVEMSDGEEVDFSHSLRADDV 1415 (1416)
T ss_pred eccccccccCccccccccccC
Confidence 334689999999999998764
No 124
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.93 E-value=6.5e-05 Score=72.20 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=75.0
Q ss_pred HHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHc---C-ChHHHHHHHHHHhcc---------CCCcHHHHHHHHHHH
Q 001619 267 INCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQ---G-DFDWVVKLYERCLIP---------CADYPEFWMRYVDFM 333 (1043)
Q Consensus 267 ~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~---g-~~e~~~~lyerAl~~---------~~~~~~LWl~yAk~~ 333 (1043)
+..||..|.+.+.. ..-+..|..||.|.+.+ | .-.....++|||+.. .+.+..+|+.||++.
T Consensus 5 r~~~e~~i~~~~~~-----dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~ 79 (125)
T smart00777 5 RQAFEQELQDLYEG-----DDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC 79 (125)
T ss_pred HHHHHHHHHhcccC-----CCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc
Confidence 45677666433322 33478999999998742 2 345688999999974 467789999999874
Q ss_pred HHcCChHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHhCCHHHHHHHHHh
Q 001619 334 ESKGGREIASYALDRATQI-FLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~-~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~r 383 (1043)
+ +++.+|.-.... ....++.+|.+||.+.+..|++.+|.+||..
T Consensus 80 ---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 ---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred ---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 2 356666544331 0124677899999999999999999999875
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00081 Score=71.55 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=112.5
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 308 VVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 308 ~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
+...+-+.+...|....+ ..+++-+.-.|+-+.+..+..++... .+....+...+++...+.|++..|...|.++..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~- 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR- 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 344444555566778888 88888888888888888887776644 445556777799999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 001619 388 SDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVI 467 (1043)
Q Consensus 388 ~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~ 467 (1043)
..|+..+.|...+-...+.|+++.||..|.+++++ ++..|..+.+.+... ++ .|+ .+.|+.++
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~---~L-----~gd---~~~A~~ll 191 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIANNLGMSL---LL-----RGD---LEDAETLL 191 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhhhHHHHH---HH-----cCC---HHHHHHHH
Confidence 56777889998888888999999999999999998 444455554432211 11 143 56799999
Q ss_pred HHHhhcCCCc
Q 001619 468 SNALYSRPDV 477 (1043)
Q Consensus 468 erAl~~~p~~ 477 (1043)
.++...-+.+
T Consensus 192 l~a~l~~~ad 201 (257)
T COG5010 192 LPAYLSPAAD 201 (257)
T ss_pred HHHHhCCCCc
Confidence 9998765543
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00012 Score=64.76 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 001619 292 WHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1043)
Q Consensus 292 W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~ 371 (1043)
|...+..+...|+++.+..+|++++...+....+|..++..+...|+++.|...|++++.. .+..+.+|...+.+....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHH
Confidence 4445555555666667777777776666666666666666666666666777666666655 334445666666666666
Q ss_pred CCHHHHHHHHHhhhh
Q 001619 372 GDTSAARAAFPESYI 386 (1043)
Q Consensus 372 g~~d~Ar~ll~ral~ 386 (1043)
|+++.|+..+.+++.
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666666553
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.011 Score=66.40 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH-HHHHH
Q 001619 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-HLFNA 365 (1043)
Q Consensus 287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i-wl~~A 365 (1043)
++.++....+..++...++..++.+|-.+....|..+.+..+++.+|.+.||...|-..+=...+.|.-+.+.| |+.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~-- 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA-- 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH--
Confidence 35666777777777788899999999999999999999999999999999998888776655554422222222 443
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.+.....-.++|...|++|.- .-|+..+--+.-+...++.|++.+|..+|+.....
T Consensus 634 ayyidtqf~ekai~y~ekaal-iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL-IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 455556667889999999863 34543333345567889999999999999988876
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.0004 Score=69.18 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
+...+.-..|+..+...|+++.|..+|+-.+...|.....|+.++-.+...|++++|...|.+|..+ .+++|...+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHH
Confidence 5666677788887888999999999999999999999999999999999999999999999999987 789999999999
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCC
Q 001619 366 RYKEQIGDTSAARAAFPESYIDS 388 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~ 388 (1043)
......|+++.|++.|+.++..+
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998643
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00019 Score=63.42 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
++.+.+..+|+++++..|.....|..++......+++++|..+|++++...|....+|..++.+.... ++.+.++..|+
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 92 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL-GKYEEALEAYE 92 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 45555555666666666655555555555555555556666666666665555555555555555554 45555555555
Q ss_pred HHHHh
Q 001619 133 RALSF 137 (1043)
Q Consensus 133 rAL~~ 137 (1043)
++++.
T Consensus 93 ~~~~~ 97 (100)
T cd00189 93 KALEL 97 (100)
T ss_pred HHHcc
Confidence 55543
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0003 Score=76.60 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC--ChHHHHHHH
Q 001619 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE--DPNDVRRLF 131 (1043)
Q Consensus 54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~--~~e~ar~lf 131 (1043)
..+.+....|.-|..+|.+.+-|..+......++++..|...|.+|++..|+++++|..|+..+....+ .-.+++.+|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344455555666666666666666666666666666666666666666666666666666665554321 223466666
Q ss_pred HHHHHhcCCCCCcHHHHHHHH-HHHHHhhhhhhHHHHHHHHhc
Q 001619 132 KRALSFVGKDYLCHTMWDKYI-EFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 132 erAL~~lp~~~~s~~IW~~yi-~fe~~~~~~e~a~~iy~raL~ 173 (1043)
++||+.-|.+.. .+|.... .|+ .|++..+...++..|+
T Consensus 217 ~~al~~D~~~ir--al~lLA~~afe--~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 217 RQALALDPANIR--ALSLLAFAAFE--QGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHhcCCccHH--HHHHHHHHHHH--cccHHHHHHHHHHHHh
Confidence 666665554431 2222222 232 3556666666666664
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.0008 Score=67.16 Aligned_cols=116 Identities=18% Similarity=0.082 Sum_probs=95.4
Q ss_pred cCChHHHHHHHHHHhccCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHhCCHH
Q 001619 302 QGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLKRL---PVIHLFNARYKEQIGDTS 375 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~---~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~---p~iwl~~A~~E~~~g~~d 375 (1043)
.++...+...+++.+...+.. ...++..|+.+...|++++|...|++++... ++. +..++..|.+....|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 688889999999999887776 5668889999999999999999999998763 322 356778899999999999
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 376 AARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1043)
Q Consensus 376 ~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal 420 (1043)
.|..+|..... ... ...++...+++..+.|+++.|+..|++||
T Consensus 103 ~Al~~L~~~~~-~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPD-EAF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccC-cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999976432 222 24467788999999999999999999985
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00029 Score=81.34 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHH
Q 001619 297 SFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSA 376 (1043)
Q Consensus 297 ~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~ 376 (1043)
.-....|+++.++.+|++||...|....+|..++..+...|+++.|...|++|+.+ .+..+..|+..+..+...|+++.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHHH
Confidence 33345788999999999999988999999999999988999999999999999887 67777888888888888999999
Q ss_pred HHHHHHhhhhC
Q 001619 377 ARAAFPESYID 387 (1043)
Q Consensus 377 Ar~ll~ral~~ 387 (1043)
|+..|++++..
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
No 133
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.065 Score=62.43 Aligned_cols=88 Identities=20% Similarity=0.126 Sum_probs=67.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHH
Q 001619 333 MESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAA 412 (1043)
Q Consensus 333 ~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~A 412 (1043)
+-+.||+..|..-|.+|++. .|+.+.+++..|-...+.|++..|.+-.+.+++ ..|...+.|++-+...+-+.++++|
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888876 677777888888888888888888887777774 4666777777777777777788888
Q ss_pred HHHHHHHHHH
Q 001619 413 CDTYKEALET 422 (1043)
Q Consensus 413 r~lyekale~ 422 (1043)
.+.|.++++.
T Consensus 446 leay~eale~ 455 (539)
T KOG0548|consen 446 LEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc
Confidence 8888888886
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00062 Score=78.57 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
+++..+...|+++|+..|.+..+|..++......|++++|...|++|+...|.+...|..++..+... ++++.|...|+
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~~~eA~~~~~ 94 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EEYQTAKAALE 94 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999888877 99999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHH
Q 001619 133 RALSFVGKDYLCHTMWDKYIE 153 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~ 153 (1043)
+|+..-|.+. ....|...++
T Consensus 95 ~al~l~P~~~-~~~~~l~~~~ 114 (356)
T PLN03088 95 KGASLAPGDS-RFTKLIKECD 114 (356)
T ss_pred HHHHhCCCCH-HHHHHHHHHH
Confidence 9999887654 3455655553
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.0011 Score=66.05 Aligned_cols=104 Identities=7% Similarity=0.115 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHY 113 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y 113 (1043)
+.+.+.-..+.-.+-.. |+++.+.++|+-++...|.+...|+.+.-.....|++++|..+|.+|+...|++++.-...
T Consensus 32 ~~~l~~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 45555656665544444 8999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619 114 CSLSMSTFEDPNDVRRLFKRALSFVGK 140 (1043)
Q Consensus 114 ~~~~~~~~~~~e~ar~lferAL~~lp~ 140 (1043)
+...+.. ++++.|++.|+.|+..++.
T Consensus 110 g~c~L~l-G~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 110 AECYLAC-DNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHhcc
Confidence 7777777 9999999999999998864
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.0039 Score=71.63 Aligned_cols=135 Identities=17% Similarity=0.071 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
|.....|...+.-....|.+++++.++...+...|+.+-+|......+...|+..+|.+.|++++.. .|+.+.+|+.|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHH
Confidence 3455667666555556889999999999999899999999999999999999999999999999987 667789999999
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
..+...|++.+|..++.+.+.. .|.....|...+.-....|+..++...+.++...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999864 5666788999999999999999999988887775
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.64 E-value=0.035 Score=61.00 Aligned_cols=298 Identities=9% Similarity=0.010 Sum_probs=163.8
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
+....|-.+|..+|.++.+..+-+..+-.. |.-..+..-+.|.|+.-|+-...-+.-.....+.|.++.|..=|...|
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 455678889999999998888755444333 444455566788888888888888888888888888888888888888
Q ss_pred HhcCCCHHHHHHHHHHH------------Hh--hCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHH
Q 001619 101 QSATYSVDVWFHYCSLS------------MS--TFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQ 166 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~------------~~--~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~ 166 (1043)
...|..-..-..+-++. .. ..|+...|.......|+..|.+ ..+...-++-....|....|+.
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcCcHHHHHH
Confidence 88774332222221111 11 1267788888888888887773 4566666666666677777776
Q ss_pred HHHHHhcCCCccHHHHHH--HHHHHHHHHHHhhhhhhhhhHHHHHHhhhccc-cccCccchhhhHHHHhhcCCchhhHHH
Q 001619 167 IFVQTLRFPSKKLHHYYD--SFKKLAGAWKEELECESDSAMEFQSELVLEGE-VPAYYKDDETSSVIKDLLDPSVDLVRS 243 (1043)
Q Consensus 167 iy~raL~~p~~~l~~~~~--~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~-l~~~~~~~e~~~~i~~~~~~~~~~e~a 243 (1043)
-++.+-++...+.+..|. .+..-++.....+. .+.+++.-.. -+.++..+. .++... +.++.+
T Consensus 211 Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~--------~iRECLKldpdHK~Cf~~YK---klkKv~---K~les~ 276 (504)
T KOG0624|consen 211 DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK--------EIRECLKLDPDHKLCFPFYK---KLKKVV---KSLESA 276 (504)
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH--------HHHHHHccCcchhhHHHHHH---HHHHHH---HHHHHH
Confidence 666665554444444432 12222232222222 2222221000 000111000 000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH
Q 001619 244 KAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP 323 (1043)
Q Consensus 244 r~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~ 323 (1043)
.. .+....|. ..+...|+.++... ...+-.+........-....+.+-+++..-.++|...|+..
T Consensus 277 e~-----~ie~~~~t------~cle~ge~vlk~ep----~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 277 EQ-----AIEEKHWT------ECLEAGEKVLKNEP----EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HH-----HHhhhhHH------HHHHHHHHHHhcCC----cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 00 01111121 22333344433110 00111122222222222334567788888888888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.+.+..|.-+.....++.|..-|++|.+.
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888888777666788888888888776
No 138
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.26 Score=58.17 Aligned_cols=118 Identities=16% Similarity=0.058 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHhCCHHHH
Q 001619 305 FDWVVKLYERCLIPCADY-PEFWMRYVDFMESKGGREIASYALDRATQI------FLKRLPVIHLFNARYKEQIGDTSAA 377 (1043)
Q Consensus 305 ~e~~~~lyerAl~~~~~~-~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~------~~~~~p~iwl~~A~~E~~~g~~d~A 377 (1043)
...+..++..+....|.. ..+-+..|......|+.+.|..+|..-... -....|.+-.+-..+.++.++.+.|
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence 445666666666655544 667778888888999999999999833211 1235677777777788888888888
Q ss_pred HHHHHhhhhC-----C-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 378 RAAFPESYID-----S-DSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 378 r~ll~ral~~-----~-~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
-.++..|+.- . .....-+|...+.|+.+.|+.++|..+|++.++.
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 8888888751 1 1233347888999999999999999999999996
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0036 Score=62.49 Aligned_cols=126 Identities=8% Similarity=0.094 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 001619 39 EWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWFH 112 (1043)
Q Consensus 39 ~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~LWl~ 112 (1043)
.+..++..+.. ++...+...++.+++.+|.+ ...++..++.....|++++|...|++++...+.. ...++.
T Consensus 14 ~y~~~~~~~~~---~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQA---GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34444554433 78888999999999999999 4556666777788899999999999999986443 235666
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 001619 113 YCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTL 172 (1043)
Q Consensus 113 Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL 172 (1043)
++++++.. ++++.|..+++.. . +..+ ...+|....+.....|+++.|+..|+++|
T Consensus 91 LA~~~~~~-~~~d~Al~~L~~~-~--~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQ-GQYDEALATLQQI-P--DEAF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHc-CCHHHHHHHHHhc-c--Ccch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67777777 8999999999652 1 2222 56788888888889999999999999875
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.003 Score=72.52 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
+.++.++..+...++..|+++-+|....++..+.+...+|.+.|+|||...|.+.-+|+.|+..+++. +++.++.++++
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~-g~~~eai~~L~ 398 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIRILN 398 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-CChHHHHHHHH
Confidence 57788888888889999999999998888888888899999999999999999999999999998888 88889999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~ 173 (1043)
+.+...|.+ ...|...++-....|+..++..-+..++.
T Consensus 399 ~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 399 RYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 998888874 46888888888777777766666555544
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.015 Score=64.98 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHhCCHHHHH
Q 001619 304 DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-----PVIHLFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 304 ~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-----p~iwl~~A~~E~~~g~~d~Ar 378 (1043)
+++.+..+|++|-. .+...|+.++|...|.+|...+.+.. ...+...+.+..+ ++++.|.
T Consensus 30 ~~e~Aa~~y~~Aa~--------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHH
Confidence 45566666666532 23334444444444444444332210 1223333333322 3777777
Q ss_pred HHHHhhhhCC-----ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH
Q 001619 379 AAFPESYIDS-----DSRFIEKVTFKANMERRL-GNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM 452 (1043)
Q Consensus 379 ~ll~ral~~~-----~~~~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~ 452 (1043)
..|.+|+... .....++....+.+.+.. |+++.|.+.|++|++...... . + ..+...+...+.+..
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~---~----~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S---P----HSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----H----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C---h----hhHHHHHHHHHHHHH
Confidence 7777776421 123356777778888877 999999999999999865432 1 1 113333445555555
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCC
Q 001619 453 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD---LCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 453 ~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee---~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
..|. .+.|-.+|++....+.+. .+..- .+...|+...- ..|+.-.|.+.+.+....+|.
T Consensus 167 ~l~~---y~~A~~~~e~~~~~~l~~--~l~~~---~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 167 RLGR---YEEAIEIYEEVAKKCLEN--NLLKY---SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HTT----HHHHHHHHHHHHHTCCCH--CTTGH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhCC---HHHHHHHHHHHHHHhhcc--cccch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5553 678999999988766554 12111 12334443332 349999999999999988874
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0025 Score=67.95 Aligned_cols=135 Identities=16% Similarity=0.034 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN 364 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~ 364 (1043)
+|.+..+-..++......|++..+..+|.||+...|+..++|...+-.|.+.|+++.||.-|.+|+++ .+..|.+.-..
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNl 174 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNL 174 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhH
Confidence 35555566668888888999999999999999999999999999999999999999999999999988 55677676666
Q ss_pred HHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
+-...-.|+++.|+.++.++..... ....+--..+-+....|++..|+++-..-+.
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 6777789999999999999986433 2234445555555667999999988655443
No 143
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.48 E-value=0.00018 Score=51.66 Aligned_cols=31 Identities=26% Similarity=0.678 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001619 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSM 118 (1043)
Q Consensus 88 ~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~ 118 (1043)
++++|+.+|+|++..+|.++++|+.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5667777777777777777777777777754
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0025 Score=60.34 Aligned_cols=100 Identities=9% Similarity=0.058 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHH
Q 001619 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDVWF 111 (1043)
Q Consensus 38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~LWl 111 (1043)
+.+...+..+... ++.+++...|++++..+|.+ ...+..++......++++.|..+|++++...|.+ ..+|.
T Consensus 3 ~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4455555555544 78888888888888888776 4567777777778888888888888888877764 56777
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619 112 HYCSLSMSTFEDPNDVRRLFKRALSFVGK 140 (1043)
Q Consensus 112 ~Y~~~~~~~~~~~e~ar~lferAL~~lp~ 140 (1043)
..+..+... ++.+.+...|++++..-|.
T Consensus 81 ~~~~~~~~~-~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQEL-GDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHh-CChHHHHHHHHHHHHHCcC
Confidence 777777666 7888888888888887665
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.45 E-value=0.0026 Score=60.25 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---PEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNA 365 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~---~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A 365 (1043)
.+...+......|+++.+...|++++...|.. ...++.++..+...|+++.|...|++++..+.. ..+.+|...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555666666777777777777777655443 456777777777777777777777777765322 1245677777
Q ss_pred HHHHHhCCHHHHHHHHHhhhhC
Q 001619 366 RYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
.+....|++++|...|.+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777753
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0095 Score=66.52 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=103.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccC---C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-----cchHHH
Q 001619 294 DYLSFAEKQGDFDWVVKLYERCLIPC---A---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-----LPVIHL 362 (1043)
Q Consensus 294 ~yi~~e~~~g~~e~~~~lyerAl~~~---~---~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-----~p~iwl 362 (1043)
+.+..++..++++.+...|++|.... . .....|...+..+.+ ++.+.|...|++|+.+|... ...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33444444555555555555555321 1 112334455555544 48999999999999987642 235677
Q ss_pred HHHHHHHHh-CCHHHHHHHHHhhhhCC----C-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619 363 FNARYKEQI-GDTSAARAAFPESYIDS----D-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1043)
Q Consensus 363 ~~A~~E~~~-g~~d~Ar~ll~ral~~~----~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~ 436 (1043)
..|++.+.. |+++.|...|.+|+... . .....++.+.+.|..++|+++.|.++|++.+...... ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~------~l-- 190 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN------NL-- 190 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH------CT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc------cc--
Confidence 788888888 99999999999998621 1 2234578899999999999999999999988852111 10
Q ss_pred HHH-HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 437 VQF-SRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 437 ~~~-ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
+.| ++..|...+-.-...|+ ...|+..|++....+|..
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSF 229 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTS
T ss_pred cchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Confidence 011 11111111111111244 457999999998877754
No 147
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.41 E-value=0.0018 Score=62.34 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=79.3
Q ss_pred HHHHHHHHHhc---cCCCcHHHHHHHHHHHHHc---C-ChHHHHHHHHHHHHHHhc-----ccc---hHHHHHHHHHHHh
Q 001619 307 WVVKLYERCLI---PCADYPEFWMRYVDFMESK---G-GREIASYALDRATQIFLK-----RLP---VIHLFNARYKEQI 371 (1043)
Q Consensus 307 ~~~~lyerAl~---~~~~~~~LWl~yAk~~e~~---g-~~e~Ar~ilerA~~~~~~-----~~p---~iwl~~A~~E~~~ 371 (1043)
..+..||+.|. .-.+.-.+|++|++|.+.+ | .-..-..+|+||++.|.. +.+ .+|+.||++.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 45677888872 2456679999999998863 2 345667899999998643 233 7899998774
Q ss_pred CCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 372 GDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 372 g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka 419 (1043)
+.++++|.-+..... .....+|..||.+.+..|++..|.+||+.+
T Consensus 80 ---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 80 ---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred ---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 446777776654333 345668999999999999999999999753
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00054 Score=58.51 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~ 115 (1043)
++.+.+..+|++++..+|.+.++|..++....+.|++++|+.+|++++...|.+..+|..+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 677777778888888888888888888888877888888888888888887777777766543
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00035 Score=59.67 Aligned_cols=63 Identities=25% Similarity=0.285 Sum_probs=34.8
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
.|+++.|..+|++++...|+...+|+.++..+...|++++|+.+|++++.. .++.+.+|..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCHHHHHHHHh
Confidence 455556666666666655666666666666666666666666666555544 333344444444
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0033 Score=68.63 Aligned_cols=125 Identities=11% Similarity=0.014 Sum_probs=106.6
Q ss_pred CCCCCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHH
Q 001619 15 PNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC---SIDK 91 (1043)
Q Consensus 15 ~~~~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~---~~e~ 91 (1043)
.+..++.-+..|+..|..||.|.+.|.-+...+-.. ++...+-..|+++++..|.+..+|..|++...-.. ...+
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~ 211 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAK 211 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHH
Confidence 445566678899999999999999999999887776 89999999999999999999999999999765442 4578
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCC
Q 001619 92 VVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDY 142 (1043)
Q Consensus 92 a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~ 142 (1043)
++.+|.+||..+|.+++--.-++--.... +++..|...++.-|+.+|.+-
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999998655555444555 899999999999999998753
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.0046 Score=74.57 Aligned_cols=141 Identities=16% Similarity=0.013 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHH--HHcC---ChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHc---C-----ChHHHHHHHHHHHHH
Q 001619 286 DIQLKNWHDYLSFA--EKQG---DFDWVVKLYERCLIPCADYPEFWMRYVDFMESK---G-----GREIASYALDRATQI 352 (1043)
Q Consensus 286 p~~~~~W~~yi~~e--~~~g---~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~---g-----~~e~Ar~ilerA~~~ 352 (1043)
|.+...|-.|+.-. ...+ +.+.++.+|++|+...|++...|...+..+... + ++..+....++++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45555665554432 1223 367999999999999999988887755533221 1 234455555555443
Q ss_pred -HhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCc
Q 001619 353 -FLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT 431 (1043)
Q Consensus 353 -~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~ 431 (1043)
..+..+.+|...+-.....|++++|...|++|+.. .+ +...|...+.+....|+.++|.+.|++|+.+ .|.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L------~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL------RPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Confidence 13345688888888888899999999999999964 44 4668888899999999999999999999998 565
Q ss_pred cHH
Q 001619 432 LPL 434 (1043)
Q Consensus 432 ~~~ 434 (1043)
.|.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 553
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00089 Score=60.02 Aligned_cols=80 Identities=15% Similarity=0.036 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 001619 337 GGREIASYALDRATQIFLKR-LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDT 415 (1043)
Q Consensus 337 g~~e~Ar~ilerA~~~~~~~-~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~l 415 (1043)
|+++.|..+|++++.....+ ...+|+..|....+.|++++|..++++ .. ..+........++..-..+|.+++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444455555444442111 223444444444555555555555544 21 1222233333334444444555555555
Q ss_pred HHH
Q 001619 416 YKE 418 (1043)
Q Consensus 416 yek 418 (1043)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 444
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.00095 Score=56.52 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s 106 (1043)
++++++..+|+++++.+|.+...|..++......|++++|..+|++++...|.+
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455555555555555555555555555555555555555555555555555543
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0012 Score=55.91 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=42.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
+..+...|+++.++.+|++++...|+...+|..++..+...|++++|+..|++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455777888888888888877888888888888877888888888888877765
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.26 E-value=0.0035 Score=64.43 Aligned_cols=85 Identities=8% Similarity=-0.120 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVW 110 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LW 110 (1043)
+.....+..+...+... ++.+++...|+++++..|.. ...|..++......|++++|...|++|+...|.....|
T Consensus 32 ~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 34444555556655555 88999999999999887764 35788888888888999999999999999999999888
Q ss_pred HHHHHHHHhh
Q 001619 111 FHYCSLSMST 120 (1043)
Q Consensus 111 l~Y~~~~~~~ 120 (1043)
..++..+...
T Consensus 110 ~~lg~~~~~~ 119 (172)
T PRK02603 110 NNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHHc
Confidence 8887776655
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.0049 Score=63.36 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHL 362 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl 362 (1043)
+.....+...+..+...|+++.+...|++|+...++ ...+|..++..+...|+++.|+..|.+|+.. .+.....|.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHH
Confidence 455667777888888899999999999999976444 3578999999999999999999999999987 555666777
Q ss_pred HHHHHHHHhCCH
Q 001619 363 FNARYKEQIGDT 374 (1043)
Q Consensus 363 ~~A~~E~~~g~~ 374 (1043)
..+.+....|+.
T Consensus 111 ~lg~~~~~~g~~ 122 (172)
T PRK02603 111 NIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHcCCh
Confidence 777777666653
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0058 Score=66.43 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHH
Q 001619 299 AEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 299 e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar 378 (1043)
+.+.+++.+|+..|++||...|....++.+.|..|.+.|.++.|.+-.++|+.+ .+...+.|..........|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 335678999999999999999999999999999999999999999999999987 4444455555555667899999999
Q ss_pred HHHHhhhhCCChhhH
Q 001619 379 AAFPESYIDSDSRFI 393 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~ 393 (1043)
..|++|+. ..|...
T Consensus 170 ~aykKaLe-ldP~Ne 183 (304)
T KOG0553|consen 170 EAYKKALE-LDPDNE 183 (304)
T ss_pred HHHHhhhc-cCCCcH
Confidence 99999995 456543
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.0015 Score=55.96 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHh
Q 001619 73 YGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFE-DPNDVRRLFKRALSF 137 (1043)
Q Consensus 73 ~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~-~~e~ar~lferAL~~ 137 (1043)
...|...+......+++++|...|++|+..+|.++.+|...+...... + +.++|.+.|++|+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHc
Confidence 345666666666666666666666666666666666666666665555 4 466666666666654
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.17 E-value=0.0064 Score=70.40 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=101.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619 294 DYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1043)
Q Consensus 294 ~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~ 373 (1043)
.++.++...+.++.++.+|++.....| ++++.+|+.+...++..+|..++.+++.. .|....++...|+|+...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 345566667889999999999988765 56777888888888899999999999976 66667899999999999999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lye 417 (1043)
++.|..+.++|+. ..|...+.|...+.....+|+++.|...+.
T Consensus 250 ~~lAL~iAk~av~-lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVE-LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999996 466667899999999999999999997664
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.16 E-value=0.0023 Score=57.33 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHhccCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCAD--YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~--~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ 379 (1043)
.|+++.|+.+|++++...+. ...+|+.+|..+-+.|++++|..++++ ... .+....++..+|+.....|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999987663 567899999999999999999999998 444 44555677777999999999999999
Q ss_pred HHHhh
Q 001619 380 AFPES 384 (1043)
Q Consensus 380 ll~ra 384 (1043)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.15 E-value=0.0024 Score=54.61 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 001619 36 DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC-SIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 36 d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~-~~e~a~~lfeRAL~~~P 104 (1043)
+...|..+...+... ++.+++...|+++++.+|.++.+|...+......| ++++|...|++|++..|
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 467888888877766 89999999999999999999999999999999999 79999999999999876
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0032 Score=68.39 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=80.9
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~ 414 (1043)
+.+++.+|...|.+|+.+ .|.++-+++..|.-+.++|.++.|.+-.++|+. ..+.+.+.|.+.......+|+++.|.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 457899999999999987 888998999999999999999999999999995 578888888888777778899999999
Q ss_pred HHHHHHHHHHhhccCCccH
Q 001619 415 TYKEALETAAEQRKFHTLP 433 (1043)
Q Consensus 415 lyekale~~~~~~~~p~~~ 433 (1043)
.|+|||++ +|.+.
T Consensus 171 aykKaLel------dP~Ne 183 (304)
T KOG0553|consen 171 AYKKALEL------DPDNE 183 (304)
T ss_pred HHHhhhcc------CCCcH
Confidence 99999998 77665
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.11 E-value=0.0099 Score=60.81 Aligned_cols=86 Identities=7% Similarity=-0.105 Sum_probs=66.0
Q ss_pred HhCCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619 31 AEGSLD--FDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY---GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1043)
Q Consensus 31 ~~nP~d--~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~---~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~ 105 (1043)
+.+..+ ...|..++..+... ++.+.+...|++++...|.+. ..|..++......|.+++|...|++|+...|.
T Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 27 PTTSGEKEAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred cCCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 455555 56677776666655 788888889999988877644 37888888888888899999999999988888
Q ss_pred CHHHHHHHHHHHH
Q 001619 106 SVDVWFHYCSLSM 118 (1043)
Q Consensus 106 s~~LWl~Y~~~~~ 118 (1043)
....|...+.+..
T Consensus 105 ~~~~~~~la~i~~ 117 (168)
T CHL00033 105 LPQALNNMAVICH 117 (168)
T ss_pred cHHHHHHHHHHHH
Confidence 8887777666654
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.0094 Score=57.35 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc---cchHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFN 364 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~---~p~iwl~~ 364 (1043)
+++..+......|+.++++.+|++|+..- ..-...|+.++..+...|++++|..+|++++..+ |+ ...++..+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 45556666677899999999999999742 3346789999999999999999999999998773 44 55788888
Q ss_pred HHHHHHhCCHHHHHHHHHhhhh
Q 001619 365 ARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
+......|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9889999999999999887775
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.11 Score=58.85 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY----PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~----~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i 360 (1043)
.|..+..|....+-..++|++..+...|..||...|.. ..|+...|....+.|+..+|...-++|+.+ .+..-+-
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syika 323 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKA 323 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHH
Confidence 46678899999998888999999999999999887654 567888888888888888888888888876 3233344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 361 HLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 361 wl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
++..|+..+-.+.++.|+.-|++++.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777778888888888888875
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.06 E-value=0.34 Score=63.28 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=73.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCC--CcHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHHHhcccc----hHHHH
Q 001619 295 YLSFAEKQGDFDWVVKLYERCLIPCA--DYPEFWMR-----YVDFMESKGGREIASYALDRATQIFLKRLP----VIHLF 363 (1043)
Q Consensus 295 yi~~e~~~g~~e~~~~lyerAl~~~~--~~~~LWl~-----yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p----~iwl~ 363 (1043)
.+......|+++.+...|++++.... .....|.. .+..+...|+.+.|...+.+.... ..... .++..
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~ 696 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHH
Confidence 34444456777777777777754211 11111211 112223356777777766554321 00111 12455
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCC-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~-----~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
.+......|++++|..+|.+++... .....+....++....+.|+.+.|+..+.+|++..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667777888888888888776521 12234456666777777888888888888888874
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0013 Score=51.27 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCS 115 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~ 115 (1043)
..|..++..+...|++++|+.+|+|+|+.+|.++++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.13 Score=58.22 Aligned_cols=138 Identities=17% Similarity=0.073 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD------------YPEFWMRYVDFMESKGGREIASYALDRATQ 351 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~------------~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~ 351 (1043)
+++.+.+.-.-+.....-.++.+.+..-|+++|...|. ..+.|-.-+.-.-+.|++..|-.+|..|+.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 44555554444443444467888999999999986543 346688888877888999999999999998
Q ss_pred HHhc----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 352 IFLK----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 352 ~~~~----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
+ -| .+..+++..|..-.++|+..+|..--..|++ ..+.+++-++..+..-.-++.++.|.+-|++|++.-
T Consensus 278 i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 278 I-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred C-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7 33 2346777778888999999999999999985 577888888888888888899999999999999973
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.03 E-value=0.012 Score=68.06 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 001619 44 LSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED 123 (1043)
Q Consensus 44 i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~ 123 (1043)
+..+... +.++.+..+|++..+..|. .+..+++.....++-.+|..++.++|...|.+.+|+...++|++.. ++
T Consensus 176 l~~l~~t--~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~ 249 (395)
T PF09295_consen 176 LKYLSLT--QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KK 249 (395)
T ss_pred HHHHhhc--ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CC
Confidence 4444333 6788999999999999975 4555666666667778999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001619 124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1043)
Q Consensus 124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~ 169 (1043)
++.|..+.++|+...|.++ .-|...++.....|+++.|.-.++
T Consensus 250 ~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999855 699999999999999988875554
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.00 E-value=2.3 Score=55.58 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=106.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-chHHHH-----
Q 001619 295 YLSFAEKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-PVIHLF----- 363 (1043)
Q Consensus 295 yi~~e~~~g~~e~~~~lyerAl~~~~-----~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-p~iwl~----- 363 (1043)
.+......|+++.+...+++++.... .....+...+..+...|+.+.|+..++++..++.... ...|..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 34444457999999999999986421 1234455577788889999999999999987633211 111211
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~---~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~a 440 (1043)
........|+.+.|..++.......... ....+...+......|+.++|..+|++++...... +.. . ..+
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~-g~~--~----~~a 731 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL-RLM--S----DLN 731 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-Cch--H----HHH
Confidence 1233345899999999987765421111 11234556667777899999999999999874221 111 0 011
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 441 RLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 441 r~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
+.. ..+.......|. .+.|+..|.+|+......
T Consensus 732 ~~~-~~la~a~~~~G~---~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 732 RNL-ILLNQLYWQQGR---KSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHH-HHHHHHHHHcCC---HHHHHHHHHHHHHHhCcc
Confidence 111 112222334454 457999999999865443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.98 E-value=0.011 Score=60.48 Aligned_cols=81 Identities=14% Similarity=-0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 287 IQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 287 ~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
.....|...+......|+++.+...|++|+...++ ...+|..++..+...|+.++|+..|++|+.. .+.....|..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHH
Confidence 35667888888887889999999999999876544 3457888999889899999999999998876 4444444444
Q ss_pred HHHHH
Q 001619 364 NARYK 368 (1043)
Q Consensus 364 ~A~~E 368 (1043)
.+.+.
T Consensus 112 la~i~ 116 (168)
T CHL00033 112 MAVIC 116 (168)
T ss_pred HHHHH
Confidence 44333
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.014 Score=64.22 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HH
Q 001619 36 DFDEWTSLLSEI-ENSCPDDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VD 108 (1043)
Q Consensus 36 d~~~W~~~i~~l-e~~~~~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~ 108 (1043)
+.+.|...+..+ .+. ++.+++...|+.+++.+|.+ ...|..++......|++++|...|++++..+|.+ .+
T Consensus 141 ~e~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 445555544333 333 68899999999999999998 3677777777788899999999999999988775 56
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619 109 VWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1043)
Q Consensus 109 LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~ 141 (1043)
.|...+...... ++.+.|+++|++.++.-|..
T Consensus 219 Al~klg~~~~~~-g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 219 AMFKVGVIMQDK-GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 777666666666 89999999999999887763
No 173
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.94 E-value=0.001 Score=47.29 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001619 89 IDKVVEVFERAVQSATYSVDVWFHYCSLS 117 (1043)
Q Consensus 89 ~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~ 117 (1043)
+++||.||+|.|...| ++..|+.|++|+
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 5677777777777644 577777777775
No 174
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.87 E-value=0.0017 Score=46.49 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~ 84 (1043)
++.+.++.+|++++..+|.+..+|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35788999999999999999999999999875
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.0077 Score=52.09 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDV 109 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~L 109 (1043)
++.+++..++++++..+|.++.+|..++......|++++|...|+++++..|.....
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 456666666666666666666666666666666666666666666666666655443
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=96.71 E-value=0.012 Score=67.96 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHh---ccCCCcHHHHHHHHH--HHH-------HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhC
Q 001619 305 FDWVVKLYERCL---IPCADYPEFWMRYVD--FME-------SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1043)
Q Consensus 305 ~e~~~~lyerAl---~~~~~~~~LWl~yAk--~~e-------~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g 372 (1043)
.+++..+|+||+ ...|.+...+...|. +.. ...+..+|+..-+||++. .+.++......+....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhc
Confidence 558888999999 777777655333333 221 122467788888888877 6677766666666666778
Q ss_pred CHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 373 ~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+++.|..+|++|+. ..|.++..|..++-+..-.|+.++|++.+++|+.+
T Consensus 353 ~~~~a~~~f~rA~~-L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKI-HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhh-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 89999999999995 57888889999988888889999999999999997
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.042 Score=60.47 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=82.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHH
Q 001619 73 YGYWRKYADHK-ARLCSIDKVVEVFERAVQSATYS---VDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMW 148 (1043)
Q Consensus 73 ~~lW~~y~~~e-~~~~~~e~a~~lfeRAL~~~P~s---~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW 148 (1043)
.+-|+.++... .+.+++++|...|++++...|.+ ...|..++...... ++++.|+..|++++..-|.+......|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 46777777654 56789999999999999999998 34555555555555 899999999999999988876666777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhc-CCCcc
Q 001619 149 DKYIEFEISQQRWSSLAQIFVQTLR-FPSKK 178 (1043)
Q Consensus 149 ~~yi~fe~~~~~~e~a~~iy~raL~-~p~~~ 178 (1043)
...+......|+.+.++++|++.++ .|...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 7666666678999999999999986 45443
No 178
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=2.9 Score=57.09 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i 360 (1043)
+-+.|..++..-.......+-+-.+.|++.. .....++|+.+|++....|.++.|...+-+|-+. ..|.+
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i 1704 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEI 1704 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchH
Confidence 3478988887765444445555556665531 3456799999999999999999999988888765 47899
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhhhhCCCh------------hhH----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Q 001619 361 HLFNARYKEQIGDTSAARAAFPESYIDSDS------------RFI----EKVTFKANMERRLGNF--VAACDTYKEALET 422 (1043)
Q Consensus 361 wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~------------~~~----~lw~~~a~lE~~~G~~--e~Ar~lyekale~ 422 (1043)
.++.|++++..|+-..|..++...+....+ ... +..+++..+.+..|++ +...+.|..+++.
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999853211 111 2233444555556664 4677888888886
Q ss_pred HHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCC-----chHHH---HHHHHHHHhhcCCCccccCChhhHHHHHHHHH
Q 001619 423 AAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGR-----SHISI---VDAVISNALYSRPDVLKVFSLEDVEDISSLYL 494 (1043)
Q Consensus 423 ~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~-----~~ler---aR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl 494 (1043)
.. .|... ..|+ | .+|.+++...... .+... +-.-|.+|+..+-.. + -+....+-.+|+
T Consensus 1785 l~-ewe~~---hy~l--~----~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~---i-yqsmPRllTLWL 1850 (2382)
T KOG0890|consen 1785 LP-EWEDK---HYHL--G----KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH---L-YQSMPRLLTLWL 1850 (2382)
T ss_pred cc-cccCc---eeeH--H----HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh---H-HHhhhHHHHHHH
Confidence 22 11111 1111 1 1223333222110 01111 112224777643322 1 122445667888
Q ss_pred HH-----H-HH-------cCCHHHHHHHHHHHHhhCCCC
Q 001619 495 QF-----L-DL-------CGTIHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 495 ~f-----e-e~-------~G~~~~a~~~~~ra~k~~p~~ 520 (1043)
++ . +. -++++.+.+...++++.+|.-
T Consensus 1851 D~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y 1889 (2382)
T KOG0890|consen 1851 DIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY 1889 (2382)
T ss_pred hhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch
Confidence 86 2 11 245667777888888888864
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.67 E-value=1.7 Score=49.39 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=87.1
Q ss_pred hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccH
Q 001619 354 LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1043)
Q Consensus 354 ~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~ 433 (1043)
.+..|.|-..+|....+.|..+.|.++.+.+++..-... + +.++.. -+.|+...-.+..++.+.. .|..|
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L-~~~~~~-l~~~d~~~l~k~~e~~l~~------h~~~p 328 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L-CRLIPR-LRPGDPEPLIKAAEKWLKQ------HPEDP 328 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H-HHHHhh-cCCCCchHHHHHHHHHHHh------CCCCh
Confidence 445678888888888888888888888888886432221 2 222222 1346777777888888886 56667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 434 LLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH 513 (1043)
Q Consensus 434 ~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra 513 (1043)
.++....++.+ +.+. ..+|...|+.|+...|+. ..|..-....+..|....|..+.+.+
T Consensus 329 ~L~~tLG~L~~--------k~~~---w~kA~~~leaAl~~~~s~----------~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLAL--------KNKL---WGKASEALEAALKLRPSA----------SDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHH--------HhhH---HHHHHHHHHHHHhcCCCh----------hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66655544333 1111 335888888888876654 23434444446678888888888888
Q ss_pred HhhCCC
Q 001619 514 IKLFPH 519 (1043)
Q Consensus 514 ~k~~p~ 519 (1043)
+-.+-.
T Consensus 388 L~~~~~ 393 (400)
T COG3071 388 LLLTRQ 393 (400)
T ss_pred HHHhcC
Confidence 865543
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.63 E-value=0.0073 Score=52.23 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=36.9
Q ss_pred HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
...++++.+..++++++...|....+|..++.++...|++++|+..|+++++.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777655
No 181
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=3.5 Score=56.33 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=143.5
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-------
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL------- 357 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~------- 357 (1043)
+..-.+.|..++.+.++.|.+++|....=.|... ..+.+.+..|+++|..|+...|..+++..+..+.+++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES--RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 3456789999999999999999999888888764 3789999999999999999999999999997755542
Q ss_pred ---------chHHHHHHHHHHHhCCHH--HHHHHHHhhhhCCC---hhh---HHHHHHHHHHH-----HHcCCHHH---H
Q 001619 358 ---------PVIHLFNARYKEQIGDTS--AARAAFPESYIDSD---SRF---IEKVTFKANME-----RRLGNFVA---A 412 (1043)
Q Consensus 358 ---------p~iwl~~A~~E~~~g~~d--~Ar~ll~ral~~~~---~~~---~~lw~~~a~lE-----~~~G~~e~---A 412 (1043)
...-+.+++|.+..|+++ .-.+.|..+++... .++ ..++.++.... ++.|.+.. +
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 134555677778888754 35566776664211 111 12222221111 12355555 2
Q ss_pred HHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHhhcCCCccccCChhhH
Q 001619 413 CDTYKEALETAAEQ--RKFHTLPLLYVQFSRLTYTELIKFTMVHGGR----SHISIVDAVISNALYSRPDVLKVFSLEDV 486 (1043)
Q Consensus 413 r~lyekale~~~~~--~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~----~~leraR~l~erAl~~~p~~~~~l~~~~~ 486 (1043)
.--|.+++...... ...|...-||++++...+. ..+.|+. .+++...++++.|+...|.-
T Consensus 1824 ~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~-----~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y--------- 1889 (2382)
T KOG0890|consen 1824 IYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS-----VEKAPRGEIVSKNLKLINSLIEEALEHLPTY--------- 1889 (2382)
T ss_pred HHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc-----cccCChhhhhhhhHHHHHHHHHHHHHhCcch---------
Confidence 33334555431100 0122233344443221110 1112211 13667888999999988874
Q ss_pred HHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhhCCCCccccc------cCccchhhhHHHh
Q 001619 487 EDISSLYLQFLDL--CG---TIHDIRNAWNQHIKLFPHTVRTAY------ECPGRETKSLRAF 538 (1043)
Q Consensus 487 ~~l~~lwl~fee~--~G---~~~~a~~~~~ra~k~~p~~~~~~~------~~~~~k~~s~~~~ 538 (1043)
.++-.|-++..+ |- -..-++.+..+.+-++|.-...++ ..+.|+.|..+-|
T Consensus 1890 -~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL 1951 (2382)
T KOG0890|consen 1890 -QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEIL 1951 (2382)
T ss_pred -HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455667777743 33 355677888888888898766211 2244555544444
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.56 E-value=0.033 Score=67.32 Aligned_cols=144 Identities=6% Similarity=-0.045 Sum_probs=107.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHc-------CCHHHHHHHH
Q 001619 28 EFIAEGSLDFDEWTSLLSEIEN---SCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK-ARL-------CSIDKVVEVF 96 (1043)
Q Consensus 28 ~~i~~nP~d~~~W~~~i~~le~---~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e-~~~-------~~~e~a~~lf 96 (1043)
.....-|.|..+|..|++...- ...+...+++..|+++++..|+....|-.++-.. ... ....++....
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3344567888888888765332 1224577899999999999999877776543321 111 1245677777
Q ss_pred HHHHHh--cCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619 97 ERAVQS--ATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 97 eRAL~~--~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~ 174 (1043)
++++.. .+....++..++-..... ++++.|...|+||+..-+ +...|..+.++....|+.+.|...|.+++.+
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~-g~~~~A~~~l~rAl~L~p----s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVK-GKTDEAYQAINKAIDLEM----SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 887774 677788888887666666 899999999999999775 3467888888889999999999999999976
Q ss_pred CC
Q 001619 175 PS 176 (1043)
Q Consensus 175 p~ 176 (1043)
.+
T Consensus 483 ~P 484 (517)
T PRK10153 483 RP 484 (517)
T ss_pred CC
Confidence 43
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.56 E-value=0.0041 Score=48.39 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 325 FWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 325 LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
+|+.++..+...|++++|+.+|+++++. .|+++.+|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 4555555555555555555555555544 444444444443
No 184
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.44 E-value=1.6 Score=49.81 Aligned_cols=119 Identities=15% Similarity=0.250 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHhcc----
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPC----ADYPEFWMRYVDFMESKGGREIASYALDRATQ-IFLKR---- 356 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~----~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~-~~~~~---- 356 (1043)
......|.+++.+..+.|.++.|...+.++.... ...+.+-+.+|+++|..|+..+|...++..+. .+.+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 4566899999999999999999999999988643 22578889999999999999999999988877 21111
Q ss_pred ----------------------------cchHHHHHHHHHHHh------CCHHHHHHHHHhhhhCCChhhHHHHHHHHHH
Q 001619 357 ----------------------------LPVIHLFNARYKEQI------GDTSAARAAFPESYIDSDSRFIEKVTFKANM 402 (1043)
Q Consensus 357 ----------------------------~p~iwl~~A~~E~~~------g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~l 402 (1043)
...+++..+++.... +..+.+.+.|..++. ..+...+.|..|+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK-LDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-hChhHHHHHHHHHHH
Confidence 124566666666666 777777777777775 345556677777666
Q ss_pred HHH
Q 001619 403 ERR 405 (1043)
Q Consensus 403 E~~ 405 (1043)
..+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 554
No 185
>PRK11906 transcriptional regulator; Provisional
Probab=96.38 E-value=0.071 Score=61.87 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=87.9
Q ss_pred HHHHHH---HhCCCCHHHHHHHHHHHH-----hc--CCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001619 25 GLEEFI---AEGSLDFDEWTSLLSEIE-----NS--CPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVE 94 (1043)
Q Consensus 25 ~le~~i---~~nP~d~~~W~~~i~~le-----~~--~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~ 94 (1043)
.|.+++ ..+|....++--+..... .. .+.+..++.+.-+++++..|.+...-...+-...-.++++.+..
T Consensus 280 lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~ 359 (458)
T PRK11906 280 IFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHI 359 (458)
T ss_pred HHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHH
Confidence 477888 777776666555433211 11 13567788899999999999987654444443334456999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619 95 VFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1043)
Q Consensus 95 lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~ 141 (1043)
+|+||+..+|++...|..++-++.-. |..+.+++.+++|++.-|..
T Consensus 360 ~f~rA~~L~Pn~A~~~~~~~~~~~~~-G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 360 LFEQAKIHSTDIASLYYYRALVHFHN-EKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCchh
Confidence 99999999999999999988777666 89999999999999987764
No 186
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.32 E-value=0.0047 Score=43.95 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001619 54 DIEMIGLVYDSFLAEFPLCYGYWRKYADHKA 84 (1043)
Q Consensus 54 ~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~ 84 (1043)
.++.+|.||||++...|. ++.|++|+++|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 478899999999999985 999999999985
No 187
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.28 E-value=0.2 Score=57.40 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC-CC-----
Q 001619 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYID-SD----- 389 (1043)
Q Consensus 319 ~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~-~~----- 389 (1043)
.......|+.+|+...+.|.++.|...+.++...... ..|.+-+.+|++.+..|+-+.|...++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3456688999999999999999999999988875311 25789999999999999999999998877761 00
Q ss_pred ---------------------------hhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619 390 ---------------------------SRFIEKVTFKANMERRL------GNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1043)
Q Consensus 390 ---------------------------~~~~~lw~~~a~lE~~~------G~~e~Ar~lyekale~~~~~~~~p~~~~l~ 436 (1043)
....+++..++.+-... +..+.+.+.|.++++. .|...+.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL------DPSWEKAW 295 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh------ChhHHHHH
Confidence 11245677777777777 8899999999999997 55566777
Q ss_pred HHHHHHHHH
Q 001619 437 VQFSRLTYT 445 (1043)
Q Consensus 437 ~~~ar~~~~ 445 (1043)
..||.+...
T Consensus 296 ~~~a~~~~~ 304 (352)
T PF02259_consen 296 HSWALFNDK 304 (352)
T ss_pred HHHHHHHHH
Confidence 777665553
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=2.5 Score=47.17 Aligned_cols=73 Identities=15% Similarity=-0.049 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619 345 ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYK 417 (1043)
Q Consensus 345 ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lye 417 (1043)
+|-..++.|.-+.....+.+|.-....|++.+|.++|-+.-.....+..-+.+..++...+.|....|..+|-
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444555555555567777888888899999999999876432211111122223445556677777777663
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.07 E-value=1.9 Score=46.98 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC
Q 001619 72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV-----DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL 143 (1043)
Q Consensus 72 s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~-----~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~ 143 (1043)
+...+...+......|++++|...|++++...|.+. .+|+.|+-|.. ++.+.|...|++.++.-|.+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCCc
Confidence 566666666666778899999999999999988875 36777666643 6788999999999998887653
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=96.04 E-value=0.11 Score=52.32 Aligned_cols=102 Identities=15% Similarity=0.022 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN 364 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~ 364 (1043)
.....+.-..++--.-..|+++.|..+|.-.+...+...+.|+.++-.+...+.++.|...|..|..+ .+++|...+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~a 111 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKNDYRPVFFT 111 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCCccchH
Confidence 34445444555544456899999999999999888888999999999999999999999999999876 56788888888
Q ss_pred HHHHHHhCCHHHHHHHHHhhhhC
Q 001619 365 ARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
+.+....|+.+.|+..|..++..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 191
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.80 E-value=6.6 Score=47.57 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVF 96 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lf 96 (1043)
++++++. .|-..++.-|..+.+|+..+++..+.|+.--|..+|
T Consensus 458 ~df~ra~-afles~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 458 GDFDRAT-AFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred CchHHHH-HHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5666665 445566778889999999999888777654444444
No 192
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.80 E-value=6.6 Score=47.56 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001619 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKL 516 (1043)
Q Consensus 488 ~l~~lwl~fee~~G~~~~a~~~~~ra~k~ 516 (1043)
++-..|.-|.+..|..+.|.+-|-.+++.
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 34556777888888888888888887764
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.58 E-value=0.28 Score=47.25 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhCCChHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLC---YGYWRKYADHKARLCSIDKVVEVFERAVQSATY---SVDVWFHYCSLSMSTFEDPND 126 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s---~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~---s~~LWl~Y~~~~~~~~~~~e~ 126 (1043)
|..+++..+|++++..-... .+.|+.+.......|.+++|..+|++++..+|. +..++..|+-.+... +..++
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~-gr~~e 93 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL-GRPKE 93 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC-CCHHH
Confidence 44445555555555432222 234444444444445555555555555555444 444444444333333 44444
Q ss_pred HHHHHHH
Q 001619 127 VRRLFKR 133 (1043)
Q Consensus 127 ar~lfer 133 (1043)
+..++-.
T Consensus 94 Al~~~l~ 100 (120)
T PF12688_consen 94 ALEWLLE 100 (120)
T ss_pred HHHHHHH
Confidence 4444433
No 194
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=3.1 Score=44.42 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.7
Q ss_pred HHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619 300 EKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ 379 (1043)
++...+.+|..+|+||. ..|..+|..+.|...++||-++ .++.+.+.|..
T Consensus 82 ke~~klsEvvdl~eKAs--------------~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~Alq 131 (308)
T KOG1585|consen 82 KELSKLSEVVDLYEKAS--------------ELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQ 131 (308)
T ss_pred HHHHHhHHHHHHHHHHH--------------HHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHH
Confidence 33445556666666664 3456678888888888888776 23456677777
Q ss_pred HHHhhhh
Q 001619 380 AFPESYI 386 (1043)
Q Consensus 380 ll~ral~ 386 (1043)
+|.+++.
T Consensus 132 lYqrala 138 (308)
T KOG1585|consen 132 LYQRALA 138 (308)
T ss_pred HHHHHHH
Confidence 7777764
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.53 E-value=0.19 Score=56.27 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhccC-C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC-A-DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR 366 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~-~-~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~ 366 (1043)
......++.|+....+.+.+...++..+... + ..+.+-+--|..+...|++++|..++.++ ...+.....+.
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vq 139 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQ 139 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHH
Confidence 3455666777754456667777776666432 2 33344444455666678888888887664 23345566778
Q ss_pred HHHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 001619 367 YKEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYT 445 (1043)
Q Consensus 367 ~E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~ 445 (1043)
+..+.+++|.|++.|+++..... .....+...|+.|-.-.+++..|.-+|++..+. ++.++.+..-.|
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A----- 208 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLA----- 208 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHH-----
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHH-----
Confidence 88999999999999998864322 223456777777776556799999999997664 444454432111
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCC
Q 001619 446 ELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTI-HDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 446 ~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~-~~a~~~~~ra~k~~p~ 519 (1043)
.. ....| +.+.|..+++.|+..+|.+ ...+.++ +-+....|.. +.+.+......+..|.
T Consensus 209 -~~--~l~~~---~~~eAe~~L~~al~~~~~~--------~d~LaNl-iv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 209 -VC--HLQLG---HYEEAEELLEEALEKDPND--------PDTLANL-IVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp -HH--HHHCT----HHHHHHHHHHHCCC-CCH--------HHHHHHH-HHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred -HH--HHHhC---CHHHHHHHHHHHHHhccCC--------HHHHHHH-HHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 11 11223 3678999999999987765 4455544 2222344555 5556666665555554
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.40 E-value=0.43 Score=47.33 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhc
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV 138 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~l 138 (1043)
.....++......|++++|..++++++...|.+..+|..+++.+... |+...|.++|++..+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 34445555555667788888888888888888888888888887777 77777888887776543
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.27 E-value=0.15 Score=59.10 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=64.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 32 EGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGY---WRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 32 ~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~l---W~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
.+|.+...|..+...+... ++++++...|+++|+.+|++... |...+......|++++|...|++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999998888777 89999999999999999999865 999999999999999999999999997
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=95.23 E-value=0.17 Score=51.02 Aligned_cols=83 Identities=8% Similarity=-0.017 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
|+++.+..+|+-++...|.++++|+-++...-..+++++|..+|..|....+.++.--..-+...+.. ++.+.|+..|+
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-~~~~~A~~~f~ 129 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-RKAAKARQCFE 129 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-CCHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555444443222222222222 45555555555
Q ss_pred HHHH
Q 001619 133 RALS 136 (1043)
Q Consensus 133 rAL~ 136 (1043)
-|+.
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 5554
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.22 E-value=0.25 Score=57.43 Aligned_cols=69 Identities=12% Similarity=-0.046 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPE---FWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~---LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.+|.....|..+...+...|++++|+..|++||..+|++.+ .|+..+..|...|++++|...|++|+..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67899999999999998999999999999999999999885 4999999999999999999999999986
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.22 E-value=2.3 Score=45.00 Aligned_cols=134 Identities=22% Similarity=0.239 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc---hH--HHHH
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VI--HLFN 364 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p---~i--wl~~ 364 (1043)
...+.-....|+++.++..|++.+...|. ....++..+.-+...|+.+.|+..|++-++.+. ..+ .+ ++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-NSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-T-TTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhhHHHHHHH
Confidence 33344444589999999999999986554 345566666666678999999999999998744 333 22 2233
Q ss_pred HHHH---------HHhCCHHHHHHHHHhhhhCCC-hhhH--------HH-------HHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 365 ARYK---------EQIGDTSAARAAFPESYIDSD-SRFI--------EK-------VTFKANMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 365 A~~E---------~~~g~~d~Ar~ll~ral~~~~-~~~~--------~l-------w~~~a~lE~~~G~~e~Ar~lyeka 419 (1043)
+.+. ...+....|...|...+...+ ..+. .+ =+.-++|..+.|.+..|..-|+.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3332 223345677788887776321 1110 01 111255666678888888888888
Q ss_pred HHHHHhhccCCccH
Q 001619 420 LETAAEQRKFHTLP 433 (1043)
Q Consensus 420 le~~~~~~~~p~~~ 433 (1043)
|+. +|.++
T Consensus 168 ~~~------yp~t~ 175 (203)
T PF13525_consen 168 IEN------YPDTP 175 (203)
T ss_dssp HHH------STTSH
T ss_pred HHH------CCCCc
Confidence 886 66554
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.33 Score=52.74 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=68.9
Q ss_pred HHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--ChhhHHHHHHHHHHHHHcCCH
Q 001619 334 ESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKANMERRLGNF 409 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--~~~~~~lw~~~a~lE~~~G~~ 409 (1043)
...|++..|...|..-++.|.. ..+.-.+.+++.....|+++.|-.+|.++.+.. .++..+..++.+....++|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 4567888888888777766443 123333334566777899999999998888642 234456778888888889999
Q ss_pred HHHHHHHHHHHHHHHhhccCCccH
Q 001619 410 VAACDTYKEALETAAEQRKFHTLP 433 (1043)
Q Consensus 410 e~Ar~lyekale~~~~~~~~p~~~ 433 (1043)
+.|+.+|+..++. +|..+
T Consensus 232 d~A~atl~qv~k~------YP~t~ 249 (262)
T COG1729 232 DEACATLQQVIKR------YPGTD 249 (262)
T ss_pred HHHHHHHHHHHHH------CCCCH
Confidence 9999999999997 77655
No 202
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=4 Score=41.27 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHH-H
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLI--PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNAR-Y 367 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~--~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~-~ 367 (1043)
............+++..+...+..++. ..+.....|...+.++...+++..|..++..++.. .+.....+..... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-DPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCCcchHHHHHHHHH
Confidence 444445555557778888888888886 56777788888888888888888888888888764 2222233444444 6
Q ss_pred HHHhCCHHHHHHHHHhhhhCCCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHH
Q 001619 368 KEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHT-LPLLYVQFSRLT 443 (1043)
Q Consensus 368 E~~~g~~d~Ar~ll~ral~~~~~---~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~-~~~l~~~~ar~~ 443 (1043)
....|+++.|...|.+++. ..+ .....+..........|+.+.+...+.+++... +. ....+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~------ 206 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALL------ 206 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHH------
Confidence 7788999999999998875 333 233344444444555688999999999988862 22 111111
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001619 444 YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 444 ~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
.........+ ..+.+...+..++...+.. ..........+. ..|..+.+...+.++++..+.
T Consensus 207 --~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 207 --NLGLLYLKLG---KYEEALEYYEKALELDPDN--------AEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --HhhHHHHHcc---cHHHHHHHHHHHHhhCccc--------HHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 1111111112 2456778888888766651 122333333444 667888888888888888775
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.20 E-value=0.82 Score=46.70 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=101.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHh
Q 001619 295 YLSFAEKQGDFDWVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQI 371 (1043)
Q Consensus 295 yi~~e~~~g~~e~~~~lyerAl~-~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E~~~ 371 (1043)
++.-..+.|+..+++..|+.++. .+.+...+-+..|+-....++...|...+++..+. ++ ..|+-.+.++...--.
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCccCCCCchHHHHHHHHhc
Confidence 34444457999999999999997 57788888899998888889999999999998876 34 4678899999999999
Q ss_pred CCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 372 g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
|.+..|+..|+-+++ ..|+ ..--+.|+.|..+.|..+++++-|....+.
T Consensus 174 g~~a~Aesafe~a~~-~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 174 GKYADAESAFEVAIS-YYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred CCchhHHHHHHHHHH-hCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 999999999999996 3443 345667888999999888877766555554
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.17 E-value=2.1 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcc
Q 001619 500 CGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 500 ~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.|....|..-+...++.+|.+..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHH
T ss_pred cccHHHHHHHHHHHHHHCCCCch
Confidence 58899999999999999998655
No 205
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.08 E-value=1.1 Score=52.37 Aligned_cols=254 Identities=12% Similarity=0.020 Sum_probs=137.9
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---cc---------------------
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---RL--------------------- 357 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---~~--------------------- 357 (1043)
..++..-+++=.+||..+|++.+.|+-.|... ...+.+|..+|.+|++.-.. ..
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 46777778888899999999988888777643 45688899999998875211 00
Q ss_pred chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHH
Q 001619 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY 436 (1043)
Q Consensus 358 p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~-~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~ 436 (1043)
.-+--..|....+.|..++|.+.|+..+++.+. +...+....+......+.+..+.+++.|.=+. ..|....+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-----~lpkSAti~ 333 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-----SLPKSATIC 333 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----cCCchHHHH
Confidence 011123466677899999999999999875433 33445555555555667888888888774221 012211111
Q ss_pred HHHHHHHHHHH-----HHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001619 437 VQFSRLTYTEL-----IKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN 511 (1043)
Q Consensus 437 ~~~ar~~~~~~-----~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ 511 (1043)
-.-|.+.+... .+...+.|-....-.|.+.+.||++.||-....|...++-. +=-+.....|+.+.+.-+.
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li---lPPehilkrGDSEAiaYAf- 409 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI---LPPEHILKRGDSEAIAYAF- 409 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC---CChHHhcCCCcHHHHHHHH-
Confidence 00122222111 11112223222223577889999998886533331111100 0011222346644333322
Q ss_pred HHHhhCCCCccccccCccchhhhHHHhhhhhhhhhhhcCCcccccccccccccccccCCCCCcCCCccCCCCCCCCCC
Q 001619 512 QHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSN 589 (1043)
Q Consensus 512 ra~k~~p~~~~~~~~~~~~k~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (1043)
-++..-.. ..-+.++++|.-+..+-.+| +..|+.-|=.+|.+|.+..| |--||.-
T Consensus 410 ~hL~hWk~------------veGAL~lL~~tweg~~r~ip----------~~le~g~~f~p~p~~~e~ad-rellp~~ 464 (539)
T PF04184_consen 410 FHLQHWKR------------VEGALNLLHCTWEGTFRMIP----------YPLEKGHLFYPYPSCTECAD-RELLPAF 464 (539)
T ss_pred HHHHHHhc------------CHhHHHHHHHHhcCCcccCC----------CccccCCccCcCCcchhhcc-ccccccc
Confidence 22222111 11155557777776666666 33344334468888887665 3334443
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.04 E-value=8.2 Score=43.93 Aligned_cols=292 Identities=11% Similarity=0.019 Sum_probs=165.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHK--ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRL 130 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e--~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~l 130 (1043)
||-..+|+.-.+.-+.....-.-.+.+++-- +-.|+++.|++-||--+.+ |.+-.+=+.-+-++-...|+.+.+|..
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 5666777777777766655555555555432 2237888888888877765 655444333332333333777888888
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001619 131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSE 210 (1043)
Q Consensus 131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e 210 (1043)
-++|-...|.- .=-|...++-....|+++.+.++......... +..-..+.. .++-....
T Consensus 177 Ae~Aa~~Ap~l---~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~---------------rAvLLtAk 236 (531)
T COG3898 177 AERAAEKAPQL---PWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERS---------------RAVLLTAK 236 (531)
T ss_pred HHHHHhhccCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHH---------------HHHHHHHH
Confidence 88887776652 12334444433456778888777665432100 000000000 00000000
Q ss_pred hhhccccccCccchhhhHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHH
Q 001619 211 LVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLK 290 (1043)
Q Consensus 211 ~i~~~~l~~~~~~~e~~~~i~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~ 290 (1043)
... . . +-| -..+++. + -.+++ +.|.-+-
T Consensus 237 A~s--~----l-dad--------------p~~Ar~~-------------A----------~~a~K--------L~pdlvP 264 (531)
T COG3898 237 AMS--L----L-DAD--------------PASARDD-------------A----------LEANK--------LAPDLVP 264 (531)
T ss_pred HHH--H----h-cCC--------------hHHHHHH-------------H----------HHHhh--------cCCccch
Confidence 000 0 0 000 0000000 0 00111 2233232
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~ 370 (1043)
.=...+..+.+.|+..+.-.++|.+-+..| ++.||..|... +.||--..|.-=-+.+....+++.+-.+.-++--..
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~a--r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRA--RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 333334445557888999999999999877 46899998765 456644444332233333345666667777777788
Q ss_pred hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 001619 371 IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL-GNFVAACDTYKEALET 422 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~-G~~e~Ar~lyekale~ 422 (1043)
.|++..||.--+-+... .|. ..++...+++|+-. |+-.++|..+-+++..
T Consensus 342 a~e~~~ARa~Aeaa~r~-~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAARE-APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhhh-Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999887766643 333 55788889999876 9999999999999984
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.97 E-value=0.076 Score=46.50 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcc---CC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIP---CA----DYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~---~~----~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
...+..++..+...|++++++..|++|+.. .+ ....++...+..+...|++++|...|++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555555566666666666666632 11 12344555555555556666666666655554
No 208
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.91 E-value=1.5 Score=49.16 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY--PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~--~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
+.+.-.-.+..+.+.++++.|.+.|+++-....+. ..|...|+.+....+++.+|..+|+..... .+..+.+....|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 34444445666667888999999998887665443 234445555544444688999999886655 334566777778
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF-VAACDTYKEALET 422 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~-e~Ar~lyekale~ 422 (1043)
-.....|++++|.+++..++.. .++....+...+.+..-.|+. +.+.+.+......
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888899999999999998853 455667777777777777876 5566666554443
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.83 Score=52.10 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH
Q 001619 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1043)
Q Consensus 360 iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ 439 (1043)
+++..|-...+.+.+..|...-.+++. ..+++++..++.......+|+++.||..|.++++. .|.+-.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~--- 328 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLE-LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAAR--- 328 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHH---
Confidence 677777888899999999999999985 46667887777777778889999999999999998 66553222
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 440 SRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 440 ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
.+...+..=++. ..++-+.+|.+++.+++..
T Consensus 329 --~el~~l~~k~~~-----~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 329 --AELIKLKQKIRE-----YEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred --HHHHHHHHHHHH-----HHHHHHHHHHHHhhccccc
Confidence 222111111111 1235677888888766543
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.87 E-value=0.39 Score=46.12 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=48.4
Q ss_pred HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
..|+.+.++..|.+||..+|.....+.+.|.-+...|+.++|..-+++|+++
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999999999999999876
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.41 Score=51.98 Aligned_cols=98 Identities=11% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHH
Q 001619 38 DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCSIDKVVEVFERAVQSATYS---VDV 109 (1043)
Q Consensus 38 ~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~-----~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s---~~L 109 (1043)
+.+..+++++.. +++..+...|..+++.+|.+. .+| +.+.....|++++|..+|.+++...|.+ ++-
T Consensus 143 ~~Y~~A~~~~ks---gdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 143 KLYNAALDLYKS---GDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence 377777887765 689999999999999999975 567 4566667789999999999999987665 566
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHhcCCC
Q 001619 110 WFHYCSLSMSTFEDPNDVRRLFKRALSFVGKD 141 (1043)
Q Consensus 110 Wl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~ 141 (1043)
.++.+..+.+. ++.+.|+++|+..++.-|..
T Consensus 218 llKlg~~~~~l-~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 218 LLKLGVSLGRL-GNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCC
Confidence 77777776666 88899999999998887763
No 212
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=17 Score=46.09 Aligned_cols=107 Identities=9% Similarity=-0.056 Sum_probs=52.6
Q ss_pred HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHH
Q 001619 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1043)
Q Consensus 301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~l 380 (1043)
..|.++.|+-+|.. ..-|.+.|..+...|++..|...-.+|- +...|-.-..-....+.|.-|
T Consensus 1206 ~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH---
Confidence 35556666666632 3457777776666666555544333332 334554432222222222111
Q ss_pred HHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1043)
Q Consensus 381 l~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~ 426 (1043)
..+....--.++-.-..+.+....|-|++...+++-++.+..+.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 11111000112223334455566688888888888888775543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.73 E-value=0.11 Score=45.56 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhhhhC---C---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 361 HLFNARYKEQIGDTSAARAAFPESYID---S---DSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 361 wl~~A~~E~~~g~~d~Ar~ll~ral~~---~---~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+...+.+..+.|++++|...|++++.. . .+..+..+...+.+....|++++|.+.|+++++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333444444555555555555555431 0 0122445566667777778888888888887775
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.65 E-value=0.03 Score=41.02 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHHcCChHHHH
Q 001619 311 LYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343 (1043)
Q Consensus 311 lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar 343 (1043)
+|+|||...|+....|..++.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478899989999999999999998889888876
No 215
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.73 Score=51.18 Aligned_cols=134 Identities=15% Similarity=0.062 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----------
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK---------- 355 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~---------- 355 (1043)
..++++|+.+..|- .|++++|..+|+-+.....-..+||+..|-.+--.|.+.+|..+-++|-+..+.
T Consensus 56 E~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred hHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 45789999999887 799999999999998755455688888876555568888888888776442110
Q ss_pred -ccchHHH--------------HHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 356 -RLPVIHL--------------FNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420 (1043)
Q Consensus 356 -~~p~iwl--------------~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekal 420 (1043)
+.++-|+ ..|.+......+.+|.++|++.+.. .+.++.+-...+-...++.-++-+.++++-.+
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 1111122 1222333334567788888887743 44443322222223345556666677666666
Q ss_pred HH
Q 001619 421 ET 422 (1043)
Q Consensus 421 e~ 422 (1043)
..
T Consensus 213 ~q 214 (557)
T KOG3785|consen 213 RQ 214 (557)
T ss_pred Hh
Confidence 65
No 216
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.58 E-value=4.8 Score=43.90 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccch---HHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP-----EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPV---IHL 362 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~-----~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~---iwl 362 (1043)
.+...+.-....|+++.|+..|++++...|... .+|+.++.| +.++++.|+..|++.++. .|+.|. ++.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~y~~A~~~~e~fi~~-~P~~~~~~~a~Y 110 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRL-NPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHh-CcCCCchHHHHH
Confidence 343344444458999999999999998766543 356666655 568999999999999988 444443 333
Q ss_pred HHHHHHHHh---------------CC---HHHHHHHHHhhhhCCC-hhh---------------HHHHHHHHHHHHHcCC
Q 001619 363 FNARYKEQI---------------GD---TSAARAAFPESYIDSD-SRF---------------IEKVTFKANMERRLGN 408 (1043)
Q Consensus 363 ~~A~~E~~~---------------g~---~d~Ar~ll~ral~~~~-~~~---------------~~lw~~~a~lE~~~G~ 408 (1043)
.-+...... .+ ...|...|++.+...+ ..+ .+--+.-++|-.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333221111 12 2345577777775422 111 0111112344555677
Q ss_pred HHHHHHHHHHHHHH
Q 001619 409 FVAACDTYKEALET 422 (1043)
Q Consensus 409 ~e~Ar~lyekale~ 422 (1043)
+..|..-|+.+++.
T Consensus 191 y~AA~~r~~~v~~~ 204 (243)
T PRK10866 191 YVAVVNRVEQMLRD 204 (243)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777777775
No 217
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=5.5 Score=43.22 Aligned_cols=200 Identities=13% Similarity=0.057 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHcCCh-HHHHHHHHHHhccCCCcHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 288 QLKNWHDYLSFAEKQGDF-DWVVKLYERCLIPCADYPEFWMRYV-DFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g~~-e~~~~lyerAl~~~~~~~~LWl~yA-k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
.....+.++.++...+.. +.+-.++|...........+|.-.+ .++...|++++|...+.+...+ ++...-+
T Consensus 71 ~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------E~~Al~V 144 (299)
T KOG3081|consen 71 PLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------EAAALNV 144 (299)
T ss_pred hHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------HHHHHHH
Confidence 445556666666544543 4556677777777777776666554 5667788999999888874332 3555566
Q ss_pred HHHHHhCCHHHHHHHHHhhhhCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 001619 366 RYKEQIGDTSAARAAFPESYIDSDSR-FIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY 444 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral~~~~~~-~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~ 444 (1043)
.+..+...+|-|++.++++....... ...+-..|+.|----+.+..|.-+|+..-+. ++-+|.+.+-.
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~----- 213 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQ----- 213 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccH-----
Confidence 77788899999999999987532221 1124445555555555689999999988885 33234322111
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001619 445 TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 445 ~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p 518 (1043)
..-+-...+.+.|.++++.||.+.++. ++++.++-+-....-.+.+...+........-|
T Consensus 214 ------Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 214 ------AVCHLQLGRYEEAESLLEEALDKDAKD--------PETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred ------HHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 111101123678999999999987664 455555444443333444444444444333333
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.37 E-value=3.3 Score=42.48 Aligned_cols=136 Identities=16% Similarity=0.092 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHH
Q 001619 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD-SRFIEKVTFKANMER 404 (1043)
Q Consensus 326 Wl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~-~~~~~lw~~~a~lE~ 404 (1043)
-++.+.-+...|+..+|+..|+.++.-.....+.+.+..|.-....+++..|...+++..+.+. ..+..-.+.|+....
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 4566777778899999999999998866667888888888888889999999999998875321 122333456667777
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHhhcCCC
Q 001619 405 RLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGR-SHISIVDAVISNALYSRPD 476 (1043)
Q Consensus 405 ~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~-~~leraR~l~erAl~~~p~ 476 (1043)
-.|....|+..|+-+++. +|+.. ++ ..|..|+.+.|.. ..-.++++|++++....|-
T Consensus 172 a~g~~a~Aesafe~a~~~------ypg~~------ar---~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 172 AQGKYADAESAFEVAISY------YPGPQ------AR---IYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred hcCCchhHHHHHHHHHHh------CCCHH------HH---HHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 789999999999999997 55422 22 2345555566632 2235788999998876554
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.00 E-value=0.29 Score=49.95 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 001619 124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFE 155 (1043)
Q Consensus 124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe 155 (1043)
+++|..-|++|+..-| +..++...+++.
T Consensus 96 F~kA~~~FqkAv~~~P----~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP----NNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-T----T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC----CcHHHHHHHHHH
Confidence 3445555666665544 234455555544
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.90 E-value=8 Score=39.02 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=75.7
Q ss_pred HHcCChHHHHHHHHHHhccCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHhCCHH
Q 001619 300 EKQGDFDWVVKLYERCLIPCA---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-LPVIHLFNARYKEQIGDTS 375 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~~---~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-~p~iwl~~A~~E~~~g~~d 375 (1043)
...|+++.+...|++++...+ .....+......+...++.+.|...+.+++.. .+. ....+...+......+.++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHH
Confidence 345667777777777766433 34444555555555667788888888887776 333 3456667777777777888
Q ss_pred HHHHHHHhhhhCCChhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 376 AARAAFPESYIDSDSRFIEKVT-FKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 376 ~Ar~ll~ral~~~~~~~~~lw~-~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.|...+.+++... +.....+. ....+. ..|.++.+...+.+++..
T Consensus 220 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALELD-PDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhhC-cccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 8888888887532 22222222 223333 567788888888888876
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.70 E-value=0.094 Score=38.38 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=22.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001619 62 YDSFLAEFPLCYGYWRKYADHKARLCSIDKVV 93 (1043)
Q Consensus 62 yeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~ 93 (1043)
|+|+|+.+|.++..|..++.+....|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777666666666654
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.64 E-value=0.89 Score=43.76 Aligned_cols=88 Identities=16% Similarity=0.048 Sum_probs=73.9
Q ss_pred HHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCCh---hhHHHHHHHHHHHHHcCCHH
Q 001619 334 ESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS---RFIEKVTFKANMERRLGNFV 410 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~---~~~~lw~~~a~lE~~~G~~e 410 (1043)
...|+++.|.+.|.+|+.+ .|..+..+-..|.-..-.|+.++|.+=+.+|++...+ +....+...+.+.+..|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4568999999999999987 6677778888888888899999999999999874322 22346778888999999999
Q ss_pred HHHHHHHHHHHH
Q 001619 411 AACDTYKEALET 422 (1043)
Q Consensus 411 ~Ar~lyekale~ 422 (1043)
.||.-|+.|-++
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 999999999887
No 223
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.54 E-value=1.2 Score=46.10 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHcCChHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCH
Q 001619 300 EKQGDFDWVVKLYERCLIPCADYP-----EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDT 374 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~~~~~-----~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~ 374 (1043)
..+|+++.|...|.+||..||... .|+...|-.+.+.+..+.|..--.+|+.+ .|.+.......|+.++....+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhHHHHHHHHHHHHhhhhH
Confidence 347889999999999998887653 44555555555556666666666666655 333334444556666666667
Q ss_pred HHHHHHHHhhhh
Q 001619 375 SAARAAFPESYI 386 (1043)
Q Consensus 375 d~Ar~ll~ral~ 386 (1043)
+.|..=|++.+.
T Consensus 185 eealeDyKki~E 196 (271)
T KOG4234|consen 185 EEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHH
Confidence 777766666664
No 224
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.52 E-value=0.61 Score=48.08 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHcCChHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCC
Q 001619 334 ESKGGREIASYALDRATQIFLKRLP-----VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGN 408 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~~~~~~p-----~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~ 408 (1043)
-.+|++++|...|.+|+.. +|.++ -++...|-...+++..+.|.+-..+|+. ..|++.+...+.|.+.+++..
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-LNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-cCchhHHHHHHHHHHHHhhhh
Confidence 4579999999999999988 44333 2455566677888999999999999995 578888888888889888899
Q ss_pred HHHHHHHHHHHHHH
Q 001619 409 FVAACDTYKEALET 422 (1043)
Q Consensus 409 ~e~Ar~lyekale~ 422 (1043)
++.|..-|++.++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999997
No 225
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.7 Score=48.99 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 001619 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRA 134 (1043)
Q Consensus 55 ~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferA 134 (1043)
+..+...|-|++..+|+...+|.+-+....+..+++.+..-..||+.++|+++.--.......+.. ..++.+..++.||
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVLQRA 104 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHHHHH
Confidence 344555899999999999999999998888888999999999999999999998777777766666 6788999999999
Q ss_pred HHhc---CCCCCcHHHHHHHHHH
Q 001619 135 LSFV---GKDYLCHTMWDKYIEF 154 (1043)
Q Consensus 135 L~~l---p~~~~s~~IW~~yi~f 154 (1043)
.... +..+ ...||.+..+-
T Consensus 105 ~sl~r~~~~~~-~~di~~~L~~a 126 (284)
T KOG4642|consen 105 YSLLREQPFTF-GDDIPKALRDA 126 (284)
T ss_pred HHHHhcCCCCC-cchHHHHHHHH
Confidence 6544 3333 56888876653
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.46 E-value=4.7 Score=39.82 Aligned_cols=107 Identities=18% Similarity=0.082 Sum_probs=73.2
Q ss_pred HHcCChHHHHHHHHHHhccC-----CCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCC
Q 001619 300 EKQGDFDWVVKLYERCLIPC-----ADYP-EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373 (1043)
Q Consensus 300 ~~~g~~e~~~~lyerAl~~~-----~~~~-~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~ 373 (1043)
...++.+.....|++|+... +... .-|+.-. |.-|.+... .+....+......|+
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~------------r~~l~~~~~-------~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPE------------RERLRELYL-------DALERLAEALLEAGD 77 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHH------------HHHHHHHHH-------HHHHHHHHHHHHTT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHhccC
Confidence 34678888999999999742 1111 1343332 222322221 255566778889999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQ 426 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~ 426 (1043)
+++|..++.+++.. .|-...+|...+......|+...|.++|++....+...
T Consensus 78 ~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 78 YEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999964 55567899999999999999999999999998876543
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.30 E-value=0.6 Score=47.65 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh---C
Q 001619 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC----------SIDKVVEVFERAVQSATYSVDVWFHYCSLSMST---F 121 (1043)
Q Consensus 55 ~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~----------~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~---~ 121 (1043)
++.+|+.++.....+|.+.+.+.+|.-...++. -+++|..-|+.||..+|+..+....+..-+... .
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 566888899999999999998888887554432 256788888889999888776544444443322 1
Q ss_pred CChHHHHHHHHHHHH
Q 001619 122 EDPNDVRRLFKRALS 136 (1043)
Q Consensus 122 ~~~e~ar~lferAL~ 136 (1043)
.+..++...|++|..
T Consensus 87 ~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE 101 (186)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 344556666666654
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.27 E-value=26 Score=44.12 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHhCCHHHHHHHHHhhhhCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 367 YKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 367 ~E~~~g~~d~Ar~ll~ral~~~~~-~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
..+..|.+++|..++..-+.+..+ ....+-.+-.+|...++.+.+..++-.++++.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 334556666666666433322111 11112223445555556666666666555554
No 229
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=15 Score=45.62 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 001619 284 LDDIQLKNWHDYLSFAEKQ--------GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK 355 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~--------g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~ 355 (1043)
.++.+-..|..|......+ ++...++ .++..|...+....+|..||.++...-. +-|.-+- +++....
T Consensus 717 ~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~q--k~r~rl~-~~k~~~~ 792 (913)
T KOG1972|consen 717 LSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQ--KIRKRLS-STKNEVD 792 (913)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHH--HHHHHHH-HHhhhhc
Confidence 4456777888887433322 3445556 4555577777788888888887654311 1111110 1111110
Q ss_pred -ccchHHHHHHHHHHHhCCHHHHHHH-H----HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 356 -RLPVIHLFNARYKEQIGDTSAARAA-F----PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 356 -~~p~iwl~~A~~E~~~g~~d~Ar~l-l----~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
....+|-.|...+.....+..|... | .+......+....+|..|+.+.-++++.+...++|.+|++.
T Consensus 793 ~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~s 865 (913)
T KOG1972|consen 793 GRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDS 865 (913)
T ss_pred chhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhc
Confidence 1123444444333222222222222 2 12222223444568999999999999999999999999995
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.8 Score=52.25 Aligned_cols=94 Identities=10% Similarity=0.152 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 001619 78 KYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEIS 157 (1043)
Q Consensus 78 ~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~ 157 (1043)
.++-...+.+.+..|.....++|+..|.++.--..-++.++.. ++++.||..|.+|++.-|. +..|=..++.+-.+
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPS---NKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Confidence 3344445666888999999999999999999888888887777 8999999999999998776 56777777877776
Q ss_pred hhhh-hhHHHHHHHHhcCC
Q 001619 158 QQRW-SSLAQIFVQTLRFP 175 (1043)
Q Consensus 158 ~~~~-e~a~~iy~raL~~p 175 (1043)
.... ++-+++|.+++...
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 6554 45588999998643
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.16 E-value=3.7 Score=40.65 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSD----SRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 359 ~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.-+..-|.-..+.|++++|++.|+......+ ...+.+++.|+-+.. |+++.|+..|++-|++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHh
Confidence 3444555666789999999999998865322 234667887776654 8999999999999998
No 232
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.12 E-value=81 Score=45.78 Aligned_cols=72 Identities=19% Similarity=0.381 Sum_probs=48.1
Q ss_pred HHhCCCCHHHHHHHHHHHHhcC-----------CCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCCHH
Q 001619 30 IAEGSLDFDEWTSLLSEIENSC-----------PDDIEMIGLVYDSFLAEFPLCYGYWRKYADHK--------ARLCSID 90 (1043)
Q Consensus 30 i~~nP~d~~~W~~~i~~le~~~-----------~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e--------~~~~~~e 90 (1043)
|+.--....+|...|..++..- ....+.+-++|...-+.. .-+.+|++-+.+- ...|.++
T Consensus 2421 i~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~D-m~~Glwrrr~~~~eT~~a~s~eQ~G~~e 2499 (3550)
T KOG0889|consen 2421 IKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEED-MFYGLWRRRAKFPETMVALSYEQLGFWE 2499 (3550)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHH-HHHHHHHHhhccHHHHHHHHHHHhhhHH
Confidence 3344457788999888777520 012234455666655554 4588999887653 3458999
Q ss_pred HHHHHHHHHHHh
Q 001619 91 KVVEVFERAVQS 102 (1043)
Q Consensus 91 ~a~~lfeRAL~~ 102 (1043)
+|-.+||+|-..
T Consensus 2500 ~AQ~lyekaq~K 2511 (3550)
T KOG0889|consen 2500 EAQSLYEKAQVK 2511 (3550)
T ss_pred HHhhHHHHHHHH
Confidence 999999999865
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=22 Score=37.99 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHhccCC------CcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCA------DYPEFWMRYVDFMESK-GGREIASYALDRATQIFLKR-----LPVIHLFNARYKE 369 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~------~~~~LWl~yAk~~e~~-g~~e~Ar~ilerA~~~~~~~-----~p~iwl~~A~~E~ 369 (1043)
.++++++...+++|+...- ......+..+.+||.. .+++.|...|+.|-..|-.. .-...+--|.+--
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 4588888888888886422 2234455777777764 67888888888887754321 1135555667777
Q ss_pred HhCCHHHHHHHHHhhhhCCChhh-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 001619 370 QIGDTSAARAAFPESYIDSDSRF-----IEKVTFKANMER-RLGNFVAACDTYKEALET 422 (1043)
Q Consensus 370 ~~g~~d~Ar~ll~ral~~~~~~~-----~~lw~~~a~lE~-~~G~~e~Ar~lyekale~ 422 (1043)
..+.+.+|.++|+.......... ++-+..-+-|-. ..++.-.++..+++..+.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 78888888888887654222111 111222222222 225556666666666665
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.33 E-value=22 Score=37.61 Aligned_cols=173 Identities=16% Similarity=0.065 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
+.|.-.+.+.-+.-++...|+++.+...|.-.+...|.+.-..++.+--+.-.|.+.-|..-|-.-... .|+.| ....
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-D~~DP-fR~L 171 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-DPNDP-FRSL 171 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc-CCCCh-HHHH
Confidence 456666666555556666778888888888887777766544444333222235555555444322222 33444 3333
Q ss_pred HHHHHHHhCCHHHHHH-HHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARA-AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~-ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~ 442 (1043)
|.-+-++.-+..+|+. +.+|+.+ .. .+.|--+ -.+.-+|.+ +...+++++..- ...-..+......
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~-~d---~e~WG~~-iV~~yLgki-S~e~l~~~~~a~-------a~~n~~~Ae~LTE 238 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEK-SD---KEQWGWN-IVEFYLGKI-SEETLMERLKAD-------ATDNTSLAEHLTE 238 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHh-cc---HhhhhHH-HHHHHHhhc-cHHHHHHHHHhh-------ccchHHHHHHHHH
Confidence 3344455566777764 4456543 22 1233322 233444544 234556665553 1122333333333
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC
Q 001619 443 TYTELIKFTMVHGGRSHISIVDAVISNALYSR 474 (1043)
Q Consensus 443 ~~~~~~~fe~~~g~~~~leraR~l~erAl~~~ 474 (1043)
.|-.+.+.-...|. ++.|.++|+-|+..+
T Consensus 239 tyFYL~K~~l~~G~---~~~A~~LfKLaiann 267 (297)
T COG4785 239 TYFYLGKYYLSLGD---LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHhcccc---HHHHHHHHHHHHHHh
Confidence 44444444444455 568999999998754
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.29 E-value=13 Score=39.19 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~ 370 (1043)
+-..+..++.+.|-..-||.-|..++...|+-++++.-..-|+...|+++.|-.+|+-.++. .|...-..+..+--..-
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeeee
Confidence 33344444445555677888899999999999999988888888899999999999887765 32221111111111112
Q ss_pred hCCHHHHHHHHHhhhhC-CChhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Q 001619 371 IGDTSAARAAFPESYID-SDSRFIEKVTFKANMERRLGNFVAAC-DTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELI 448 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral~~-~~~~~~~lw~~~a~lE~~~G~~e~Ar-~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~ 448 (1043)
-|.+.-|..-|..--.. +...+-.+|+... |.+ -+...|+ .+.+++...-. .-|.-+ .+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--E~k-~dP~~A~tnL~qR~~~~d~---------e~WG~~-------iV 206 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--EQK-LDPKQAKTNLKQRAEKSDK---------EQWGWN-------IV 206 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH--Hhh-CCHHHHHHHHHHHHHhccH---------hhhhHH-------HH
Confidence 45666665544443332 2222333566542 333 3555554 44466655411 122111 01
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 001619 449 KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDL---CGTIHDIRNAWNQHIK 515 (1043)
Q Consensus 449 ~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~---~G~~~~a~~~~~ra~k 515 (1043)
.| -.|... ...+++++....-++ ..-++.+.+.|.-+-+. .|++++|..+++-|+.
T Consensus 207 ~~--yLgkiS----~e~l~~~~~a~a~~n-----~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 207 EF--YLGKIS----EETLMERLKADATDN-----TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HH--HHhhcc----HHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 012221 456777776543333 22345566666666654 4999999988876554
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.18 E-value=5.9 Score=39.23 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCY-----GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD 108 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~-----~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~ 108 (1043)
++...+.+.|+.+...+|.+. .||+.|+- .+.++++.|...++|.++.+|.++.
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yay--y~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAY--YKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHhCCCCCC
Confidence 455555555555555555432 33333332 2334455555555555555555544
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.06 E-value=7 Score=40.43 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPC---ADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~---~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
...|...++++.+.|+.+.|.+.|.++...| .+..++|+..++.....||...+...+++|-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3577788888888888888888888887655 344567777777777777877777777777665
No 238
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.99 E-value=1.1 Score=49.51 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHH
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS 343 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar 343 (1043)
....+-+.+.|.+++++..|.+++...|+.+.+..+.|.-|.+...+.-|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHH
Confidence 444555556788888888888888888888888877777666554444333
No 239
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=90.64 E-value=1 Score=50.56 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC--ChhhHHHHHHHH
Q 001619 323 PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS--DSRFIEKVTFKA 400 (1043)
Q Consensus 323 ~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~--~~~~~~lw~~~a 400 (1043)
..||-.++..-+...-.+....+|..|+.+....|| -++.+.+|...+... ..+++++|+-.|
T Consensus 83 ~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp---------------~eei~~~L~~li~~IP~A~K~aKYWIC~A 147 (353)
T PF15297_consen 83 GSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCP---------------KEEILATLSDLIKNIPDAKKLAKYWICLA 147 (353)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 467877766655444445666788888877666676 345556666666532 236788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 001619 401 NMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 401 ~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.||.+.|.++.+..+|++||..
T Consensus 148 rl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 148 RLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHhhcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999995
No 240
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.62 E-value=0.21 Score=55.41 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=93.2
Q ss_pred HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHH
Q 001619 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380 (1043)
Q Consensus 301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~l 380 (1043)
..|.++.++.+|.+||..+|....|+...+..+.+.++...|..-+.+|+.+ +++...=+-.-..-+...|+++.|+..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-NPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-CcccccccchhhHHHHHhhchHHHHHH
Confidence 3678999999999999999999999999999888888999999999999987 655554333333445668999999999
Q ss_pred HHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 381 l~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
|+.+++.....-..-|.+- .+-+.+.++.-|..|+++.+..
T Consensus 205 l~~a~kld~dE~~~a~lKe--V~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLKE--VFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHhccccHHHHHHHHH--hccchhhhhhchhHHHHHHHHh
Confidence 9999874333334456664 4555677888888888888764
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.06 E-value=0.78 Score=32.80 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~ 105 (1043)
+.|..++......|++++|+..|++|+...|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46777777777777888888888888877775
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=32 Score=37.12 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHK------ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND 126 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e------~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ 126 (1043)
..+++++..++++.+-+-.+-.+|...=..| .+...+.+|..+|+||... |+ ++ |..+.
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l----------Y~----E~-Gspdt 109 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL----------YV----EC-GSPDT 109 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HH----Hh-CCcch
Confidence 5667777777777766655555554332222 1122344555555555543 33 33 77777
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcC
Q 001619 127 VRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 127 ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~ 174 (1043)
|-..++||-+.+- ..+.+.|..+|.|++.+
T Consensus 110 AAmaleKAak~le------------------nv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 110 AAMALEKAAKALE------------------NVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHHHHHHHHhh------------------cCCHHHHHHHHHHHHHH
Confidence 7777777766542 22467788888888764
No 243
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.88 E-value=2.1 Score=47.56 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=80.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHH
Q 001619 332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVA 411 (1043)
Q Consensus 332 ~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~ 411 (1043)
-|-+.|.+++|...|.+++.+ .|.+|-++...|.-+++...|..|..-...|+. ....+++.|.+.+.--+.+|++++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhHHHHHHHHHHHHHHHHHhhHHH
Confidence 345789999999999999987 667777777777777888888888877777774 345677888888888888999999
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHH
Q 001619 412 ACDTYKEALETAAEQRKFHTLPLLYVQFSRL 442 (1043)
Q Consensus 412 Ar~lyekale~~~~~~~~p~~~~l~~~~ar~ 442 (1043)
|.+-|+.+|++ .|..-.|--.+++.
T Consensus 184 AKkD~E~vL~L------EP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 184 AKKDCETVLAL------EPKNIELKKSLARI 208 (536)
T ss_pred HHHhHHHHHhh------CcccHHHHHHHHHh
Confidence 99999999998 45545555555544
No 244
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=89.46 E-value=0.11 Score=56.92 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=0.0
Q ss_pred cccccccCCC
Q 001619 739 SVLGASQNNN 748 (1043)
Q Consensus 739 ~~~~~~~~~~ 748 (1043)
||||--++++
T Consensus 268 TvLgpDtYD~ 277 (468)
T PF11498_consen 268 TVLGPDTYDT 277 (468)
T ss_dssp ----------
T ss_pred cccCccchHH
Confidence 3444444443
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=36 Score=36.52 Aligned_cols=117 Identities=19% Similarity=0.131 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-----ccchHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK-----RLPVIHLFNA 365 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~-----~~p~iwl~~A 365 (1043)
.+.+.+++..+.|+...+-.+|-.|-. -+ +.++.++|...+++|+.+|.. .-+..++..+
T Consensus 56 aflkaA~~h~k~~skhDaat~YveA~~--------------cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 56 AFLKAADLHLKAGSKHDAATTYVEAAN--------------CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHH--------------Hh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 455666777777777766666666543 22 345889999999999998653 1234566677
Q ss_pred HHHHH-hCCHHHHHHHHHhhhhC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 366 RYKEQ-IGDTSAARAAFPESYID-----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 366 ~~E~~-~g~~d~Ar~ll~ral~~-----~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
++.+. ..++++|...|+.|-.- .....-+-+++-+++-..+|.+.+|.++|++....
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76664 58999999999988641 11111235677777777888999999999998775
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.75 E-value=5.7 Score=42.38 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhcc----CCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHH
Q 001619 303 GDFDWVVKLYERCLIP----CAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1043)
Q Consensus 303 g~~e~~~~lyerAl~~----~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d 375 (1043)
.+.+.++..|.-|+.. ..+ ...+|++.|=.+...|+.+.....+.+|+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al------------------------- 145 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL------------------------- 145 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-------------------------
Confidence 3677777777777742 111 13445555444444444444444444444
Q ss_pred HHHHHHHhhhhCC-C----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 376 AARAAFPESYIDS-D----SRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 376 ~Ar~ll~ral~~~-~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
..|.+|...- . -+...+.+.-+.|.+++|++++|...|.+++...
T Consensus 146 ---~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 146 ---EFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred ---HHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444444311 1 1224456667889999999999999999999853
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.73 E-value=5.5 Score=47.89 Aligned_cols=122 Identities=17% Similarity=0.028 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--hcccc-hHHHHHHHHHHHhCCHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIF--LKRLP-VIHLFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~--~~~~p-~iwl~~A~~E~~~g~~d~Ar 378 (1043)
..+.+.+..++++.....|+..-+-..-++++...|++++|...|++|+..- .+... -++...+.......++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3467889999999999999876555566678888999999999999988531 11111 23445566677899999999
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Q 001619 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNF-------VAACDTYKEALETA 423 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~-------e~Ar~lyekale~~ 423 (1043)
..|.+.++...-...-+.+..+-....+|+. ++|.++|.++-...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999998643321122222334455556777 66666666655543
No 248
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.44 E-value=46 Score=39.44 Aligned_cols=130 Identities=13% Similarity=-0.012 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK--RLPVIHLFNARYK 368 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E 368 (1043)
.+...+..+..+ ..+....++||.+..|-+...+=-..|.+||+ ++...+...|.+|+..+.+ ....|---|+++-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 444455555545 44667788888888888888888889999987 7889999999999988776 3445555666664
Q ss_pred H-HhCCHHHHHHHHHhhhhCCChhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Q 001619 369 E-QIGDTSAARAAFPESYIDSDSRFIEKVTFKA-NMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 369 ~-~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a-~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+ --.+.|.-..+..+.-+........+.+.++ +-.....|+++|..++.-.++.
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 4 3556777666665553322222233333333 1223346899999999988886
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.42 E-value=11 Score=41.58 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCccccCChhhHH----HHHHHHHHH--HHHcC--CHHHHHHHHHHHHhhCC
Q 001619 455 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVE----DISSLYLQF--LDLCG--TIHDIRNAWNQHIKLFP 518 (1043)
Q Consensus 455 g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~----~l~~lwl~f--ee~~G--~~~~a~~~~~ra~k~~p 518 (1043)
|++-.+...|+|+|--.. .|-+ .+ .+..+ +..+.|+.. +...| .++++.++-.|.+-.+.
T Consensus 245 gntlsl~~~R~ILEtrma-vpGK--Si-~EhNEviGMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~vD 312 (472)
T KOG3824|consen 245 GNTLSLGQTRAILETRMA-VPGK--SI-REHNEVIGMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGNVD 312 (472)
T ss_pred ccccchHHHHHHHhhccc-CCCc--Ch-HHhhhhhhHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcCCC
Confidence 555456778999986433 1211 11 11111 123334433 33455 47888888888887774
No 250
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=4.8 Score=42.95 Aligned_cols=96 Identities=11% Similarity=-0.090 Sum_probs=76.9
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 19 VGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER 98 (1043)
Q Consensus 19 ~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeR 98 (1043)
.++.+..|-++|..||.....|..-+...-+. ...+....-.+|++...|++++--.....+......++.+..++.|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45678899999999999999998865543334 6788888889999999999999887777777777789999999999
Q ss_pred HHHh-----cCCCHHHHHHHHHH
Q 001619 99 AVQS-----ATYSVDVWFHYCSL 116 (1043)
Q Consensus 99 AL~~-----~P~s~~LWl~Y~~~ 116 (1043)
|... ++.-.+||..+.+.
T Consensus 104 a~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHHHH
Confidence 9654 24456788776554
No 251
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=87.23 E-value=42 Score=42.71 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCccccccccccccccccccCCCcccc----ccCCCchhh--hccccccCChhhhhhhhhhhhhccccccchhhhcccc
Q 001619 595 PENHDIRSDGAEVDILLSGEADSSSQDR----MQQVPPEAA--EQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEE 668 (1043)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1043)
+-|-|+++.||.-....|--..+.-.|. -..++++++ .|..|-.-|..++..|---..+..... -+..+.-
T Consensus 34 p~~e~~rs~gr~sp~~~stss~d~k~e~~~~~~kk~kee~~~~~k~~k~~r~~~~~~~~~~~~~~~k~~k---~~~~~~p 110 (982)
T PF03154_consen 34 PTNEDLRSSGRASPSAASTSSSDSKAESSKKTNKKIKEEASSPLKSSKRQREKPASESEEPERAAPKKSK---TQELSRP 110 (982)
T ss_pred CchhhhcccCCCCCCccccccccccccccccccccccccccccCccccccccccccccccccccccccCC---cccCCCC
Confidence 4577889999887776665433322222 222333333 244444444444443331111111111 2445555
Q ss_pred hhhh-hhhcccccccCCCCCccCCcCCCCC
Q 001619 669 DDVQ-REYEHESKKDLKPLSLEGLSLDPGG 697 (1043)
Q Consensus 669 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1043)
++-. .|+|+|-+.| |+|+=|+|--+
T Consensus 111 ~sps~~e~e~e~e~e----s~d~rs~nd~g 136 (982)
T PF03154_consen 111 NSPSESEGEGEGEGE----SSDGRSVNDDG 136 (982)
T ss_pred CCCccccccccCccc----ccccccccccC
Confidence 5433 5666665554 77777777655
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.85 E-value=1.5 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.+|..++..+...|++++|+..|++|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666666666666666666666655
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.80 E-value=19 Score=42.59 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc-------------CCCcHHHH------------HHHHHHHHHcCC
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP-------------CADYPEFW------------MRYVDFMESKGG 338 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~-------------~~~~~~LW------------l~yAk~~e~~g~ 338 (1043)
++|+..+.|.-+++ +...++.++..+|++|++. .+...++| .++|...++.|.
T Consensus 197 i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr 274 (539)
T PF04184_consen 197 INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGR 274 (539)
T ss_pred hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCC
Confidence 45666666643332 2245678889999999862 12222222 345666788999
Q ss_pred hHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHH-cCC--------
Q 001619 339 REIASYALDRATQIFLK-RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-LGN-------- 408 (1043)
Q Consensus 339 ~e~Ar~ilerA~~~~~~-~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~-~G~-------- 408 (1043)
.++|.+.|...++.+.. +.-.|.-...+.+...+.+.++.+++.+--+...|+++.+.+..|-|..| .|+
T Consensus 275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~ 354 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAAS 354 (539)
T ss_pred hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhh
Confidence 99999999888876432 23346666677778899999999999986433345666554444444322 222
Q ss_pred -------HHHHHHHHHHHHHH
Q 001619 409 -------FVAACDTYKEALET 422 (1043)
Q Consensus 409 -------~e~Ar~lyekale~ 422 (1043)
...|.+...||++.
T Consensus 355 rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 355 RRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hcCCChhHHHHHHHHHHHHHh
Confidence 23466778888886
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.32 E-value=1.4e+02 Score=39.29 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 001619 124 PNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQ 159 (1043)
Q Consensus 124 ~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~ 159 (1043)
++.-++-|++||.++-.. ....|...++|.++++
T Consensus 889 ID~~L~ry~~AL~hLs~~--~~~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSEC--GETYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHHHHHHHHHHHc--CccccHHHHHHHHhcc
Confidence 445555555555544221 1234555555555444
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.31 E-value=2.2 Score=30.60 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~ 105 (1043)
+.|...+......+++++|...|+|||+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777888888888888888888774
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.03 E-value=1.4e+02 Score=39.18 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.|-...+|.+++|-+.++..+|.--. .+...+...||+.+...+..++|.-.|+++-+.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~---e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl 968 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDS---EKQKVIYEAYADHLREELMSDEAALMYERCGKL 968 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCH---HHHHHHHHHHHHHHHHhccccHHHHHHHHhccH
Confidence 45566667777765555444443222 235677888888888888888888888776543
No 257
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=84.76 E-value=4.2 Score=45.84 Aligned_cols=86 Identities=8% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIE 153 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~ 153 (1043)
.+|....+......-.+++...|..+|.++ ..+.-.++++.+++.-+..+|.--.....|+..++
T Consensus 84 sFw~tm~eEde~~~~t~kvn~tlsECl~Li---------------~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Ar 148 (353)
T PF15297_consen 84 SFWTTMAEEDEQRLFTEKVNKTLSECLNLI---------------EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLAR 148 (353)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHH---------------HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 489887765443334567777777777652 12134567888888888888765445689999999
Q ss_pred HHHHhhhhhhHHHHHHHHhcC
Q 001619 154 FEISQQRWSSLAQIFVQTLRF 174 (1043)
Q Consensus 154 fe~~~~~~e~a~~iy~raL~~ 174 (1043)
++...|.++.+..||+.|+..
T Consensus 149 l~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 149 LEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHhhcCCHHHHHHHHHHHHHc
Confidence 999999999999999999754
No 258
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=84.71 E-value=3.6 Score=52.92 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHH---cC-C-hHHHHHHHHHHhccC---------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001619 288 QLKNWHDYLSFAEK---QG-D-FDWVVKLYERCLIPC---------ADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~---~g-~-~e~~~~lyerAl~~~---------~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~ 353 (1043)
-+..|..|+.|... .| . ...++.+.+||+... +.+..+|+- ++......+++.+|......-
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~----~~~~e~~~d~~d~f~~m~~kg 108 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS----LELREELQDAEDFFSYLENKG 108 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh----HHHHHHHhhHHHHHHHHHhcc
Confidence 35789999999874 23 3 456788888888642 223455554 122223456677776554321
Q ss_pred -hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcC
Q 001619 354 -LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLG 407 (1043)
Q Consensus 354 -~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G 407 (1043)
......++..|+.++++.+.+.+|.++|..++........++-..|..|..++|
T Consensus 109 Ig~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 109 IGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 123456788889999999999999999998886433333455555555666554
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.67 E-value=85 Score=36.41 Aligned_cols=176 Identities=11% Similarity=-0.018 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMES---KGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~----~~~~~~LWl~yAk~~e~---~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
+-+.++--+....+++..+.+++..-.. ..+...+=..||-.+.+ .|+.++|+.++..++..-....+++++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334444444556788888888876654 34566777788888877 8999999999998766544456777776
Q ss_pred HHHHHHH---------hCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHhhccCC
Q 001619 364 NARYKEQ---------IGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV----AACDTYKEALETAAEQRKFH 430 (1043)
Q Consensus 364 ~A~~E~~---------~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e----~Ar~lyekale~~~~~~~~p 430 (1043)
++..... ...+++|...|.++.... +++ --=+.++.|..-.|.-. +.+++--+.-.....+....
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 6554422 224789999999998643 321 11234455555555422 23333311111111111111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCc
Q 001619 431 TLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 431 ~~~~l~~~~ar~~~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~ 477 (1043)
.... .|....-||...... ..+++....++++...|+.
T Consensus 301 ~~~d--------YWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQD--------YWDVATLLEASVLAG-DYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccc--------HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCcc
Confidence 1112 233333344433211 2668999999988766653
No 260
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=84.50 E-value=0.3 Score=62.82 Aligned_cols=13 Identities=0% Similarity=-0.141 Sum_probs=0.0
Q ss_pred cccCCCCcccccc
Q 001619 732 ETSLSDGSVLGAS 744 (1043)
Q Consensus 732 ~~~~~~~~~~~~~ 744 (1043)
+|.-....+.+..
T Consensus 63 Df~~~~~~la~~~ 75 (808)
T PF09770_consen 63 DFEGQHAQLAELI 75 (808)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4444444444333
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.19 E-value=2.3 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY 105 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~ 105 (1043)
++|...+......|++++|.+.|++|++..|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56778888888888888888888888887763
No 262
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.14 E-value=87 Score=36.09 Aligned_cols=198 Identities=15% Similarity=0.068 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccC--CC----cHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPC--AD----YPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~--~~----~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
.|...++-....|+.+.++.+.+...... .+ -...-+--++-.+. ..|...||..-..+.++ .+++.---+.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdlvPaav~ 268 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCccchHHHH
Confidence 44444444444567777766666554321 11 11111222222222 12455555554445444 2332223344
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLT 443 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~ 443 (1043)
.++.+.+.|++-++-+|++.+-+. .| +..||..|++. +.|+. +..-++++-.+..-+ |....--
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~-eP-HP~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk---~nnaes~------- 332 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKA-EP-HPDIALLYVRA--RSGDT--ALDRLKRAKKLESLK---PNNAESS------- 332 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhc-CC-ChHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcC---ccchHHH-------
Confidence 556666666666666666666542 22 24556666443 22332 222222222211000 0001000
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Q 001619 444 YTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLC-GTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 444 ~~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~-G~~~~a~~~~~ra~k~~p~ 519 (1043)
....+--...|+ ...+|+--|.+....|. +.++.+..+.|+-. |+...++..+.+++++-.+
T Consensus 333 -~~va~aAlda~e---~~~ARa~Aeaa~r~~pr----------es~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 333 -LAVAEAALDAGE---FSAARAKAEAAAREAPR----------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred -HHHHHHHHhccc---hHHHHHHHHHHhhhCch----------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 000000001122 34567766766665554 45778888888765 9999999999999988644
No 263
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.86 E-value=2 Score=46.99 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCC
Q 001619 84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGK 140 (1043)
Q Consensus 84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~ 140 (1043)
.+.|+.++|..+|+-||...|.++++.+.|..|...+ +++-.|-..|-+||..-|.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCC
Confidence 3457888888888888888888888888888887766 6777788888888776664
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.68 E-value=21 Score=36.92 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcC
Q 001619 74 GYWRKYADHKARLCSIDKVVEVFERAVQSATY---SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1043)
Q Consensus 74 ~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~---s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp 139 (1043)
..|...+++..+.|++++|.+.|.|+...+.. .+++|+..++..+.. ++...+...+++|-..+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHh
Confidence 34667778888889999999999998887532 457888888887777 788888888888877654
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.48 E-value=50 Score=39.75 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=77.1
Q ss_pred cCChHHHHHHHHHHhccCCCcH------HH-HHHHHH-HHH---HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYP------EF-WMRYVD-FME---SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQ 370 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~------~L-Wl~yAk-~~e---~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~ 370 (1043)
.||.+.....+.+|.....-.. -| |..++. |.- ...+++.|..++++.... .|+.....+..++++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 5899999999999987422111 11 222222 222 244688999999999887 45565444566899999
Q ss_pred hCCHHHHHHHHHhhhhCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 371 IGDTSAARAAFPESYIDSD----SRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral~~~~----~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.|++++|.+.|.+++.... -..+-+|-. +-.--..+++++|...|.+.++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El-~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFEL-AWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999884211 011112222 11222347999999999998884
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=69 Score=35.65 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=50.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHH
Q 001619 331 DFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV 410 (1043)
Q Consensus 331 k~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e 410 (1043)
+-....|++.+|..+|..++.. .+...++-+.+++.....|+++.|..+|...=.....+-.......+.|.++..+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3344567888888888888776 455567888888888888888888888865422111111111223455555554444
Q ss_pred HHHHH
Q 001619 411 AACDT 415 (1043)
Q Consensus 411 ~Ar~l 415 (1043)
+.-.+
T Consensus 221 ~~~~l 225 (304)
T COG3118 221 EIQDL 225 (304)
T ss_pred CHHHH
Confidence 43333
No 267
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.21 E-value=21 Score=43.03 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHhhh
Q 001619 356 RLPVIHLFNARYKEQIGDTSAARAAFPESY 385 (1043)
Q Consensus 356 ~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral 385 (1043)
-.+.+++-|+.+..+...+++|.+.|.+|-
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 356777778888877777887777777664
No 268
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=25 Score=38.38 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhc
Q 001619 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFV 138 (1043)
Q Consensus 88 ~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~l 138 (1043)
.+.+|.-+|+..-...+..+.+-..-+...+.. +++++|..+++.||..-
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhcc
Confidence 344555555555554444444444444444444 55555555555555443
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.36 E-value=45 Score=38.61 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHhCCHHHHHHHH
Q 001619 303 GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLF-NARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 303 g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~-~A~~E~~~g~~d~Ar~ll 381 (1043)
+|++.+..++ ..+|.+.+--+..+..+...|+.+.|..+++||+-++-. .|.. +..+...... -.+|--|
T Consensus 24 ~Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----~~~~~F~~~~~~~~~-g~~rL~~ 94 (360)
T PF04910_consen 24 HDPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----AFHPSFSPFRSNLTS-GNCRLDY 94 (360)
T ss_pred cCHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHhhhhhccccc-CccccCC
Confidence 4777777665 457999999999999999999999999999999877332 1111 1010000000 0011111
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHH
Q 001619 382 PESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQF 439 (1043)
Q Consensus 382 ~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ 439 (1043)
.+. + +-.......+|+....+.|.+..|.++.+-.+.+-.. .+|.-..++++|
T Consensus 95 ~~~--e-NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~--~DP~g~ll~ID~ 147 (360)
T PF04910_consen 95 RRP--E-NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD--EDPLGVLLFIDY 147 (360)
T ss_pred ccc--c-chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCcchhHHHHHH
Confidence 111 1 1122334556777777889999999999999887211 144445666666
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.74 E-value=1.4e+02 Score=36.80 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHc
Q 001619 288 QLKNWHDYLSFAEKQ 302 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~ 302 (1043)
++.-|-+.+++..+.
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445566666655443
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.39 E-value=20 Score=39.73 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001619 75 YWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALS 136 (1043)
Q Consensus 75 lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~ 136 (1043)
.-.++++.+...++++.+.+.+++.+...|+.-.+|...+...... +....|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 3345556566667889999999999999999999999999998888 888888888887654
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.89 E-value=1.5e+02 Score=36.57 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619 132 KRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 132 erAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~ 173 (1043)
+.|...+...+ +.++|.+.+++....-.++.|...|-|.-.
T Consensus 680 edA~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 680 EDAIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 34444443333 578888887776655556666666665543
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.66 E-value=3.8 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.+|...+..+...|+++.|...|++|+++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57888888888888888888888888776
No 274
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=95 Score=34.00 Aligned_cols=102 Identities=9% Similarity=-0.036 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcccchHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQ-GDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGRE-IASYALDRATQIFLKRLPVIH 361 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~-g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e-~Ar~ilerA~~~~~~~~p~iw 361 (1043)
++|.++.+|.-+-..++.. .+..+-...+++.+.-+|+...+|...-...+..|+.. .-..+..+++.. -.++--+|
T Consensus 72 lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-DaKNYHaW 150 (318)
T KOG0530|consen 72 LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-DAKNYHAW 150 (318)
T ss_pred hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-cccchhhh
Confidence 7899999998776666543 35666677888888889999999999999889888765 444455555443 11122244
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 362 LFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 362 l~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
---.......+.++.-...-...++
T Consensus 151 shRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 151 SHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4333333334445554444444443
No 275
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=80.23 E-value=15 Score=47.44 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHc----CC-hHHHHHHHHHHHHHHhc----
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK----GG-REIASYALDRATQIFLK---- 355 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~----g~-~e~Ar~ilerA~~~~~~---- 355 (1043)
++.-...|..|+..++... ..+....|.+|+.+.... +. ....+.+++|++..+.+
T Consensus 11 ~~~~~n~eq~li~el~~~~---------------~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y 75 (974)
T KOG1166|consen 11 NPTPLNYEQRLIYELESYA---------------GNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRY 75 (974)
T ss_pred cCcHHHHHHHHHHHHHhhc---------------CCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhc
Confidence 3455567777766665221 234567899999987542 23 67888999999876432
Q ss_pred -ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 356 -RLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-DSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 356 -~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
..+.+...|.. .+....+.+|+.+|..+-... .....-+|..|+.+.++.+.+.+|.++|..+++.
T Consensus 76 ~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 76 RNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQN 143 (974)
T ss_pred cccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22332222222 234456778888888776533 3344557889999999999999999999999885
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=34 Score=38.44 Aligned_cols=138 Identities=14% Similarity=-0.037 Sum_probs=93.4
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH
Q 001619 285 DDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP----CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360 (1043)
Q Consensus 285 ~p~~~~~W~~yi~~e~~~g~~e~~~~lyerAl~~----~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i 360 (1043)
.|++.-.|..-=+...-+|+-+--+..++|.+-. .|-+.-+-=+||--++..|-+++|.+.-+||+.+ ++...+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi-N~~D~Wa 211 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI-NRFDCWA 211 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC-CCcchHH
Confidence 4777777765544444477777777788887743 3445677778888888899999999999999987 5443333
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhhhhCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRF---IEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 361 wl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~---~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
.-+.+-..+-+|.+.++.+.+.+.-..-.... .-.|-..+-|-.+-+.++.|.+||++-|-..
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 44556677889999999999887643111100 0123334445555589999999998866543
No 277
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.36 E-value=2e+02 Score=36.60 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=75.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCY--GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRL 130 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~--~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~l 130 (1043)
+.++++-.-.++.++.+|+.. +..+.+.- .+.|..++|..++| |+...+..-++-+..+.+..+..+..++|..+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl--~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSL--FRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHH--HHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 577888888999999999865 33444443 35567788885555 44444555666666666655544788999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001619 131 FKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFV 169 (1043)
Q Consensus 131 ferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~ 169 (1043)
|+||+..-|..-....++.+|++-..-...-..+.++|+
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887632233566666654433333445666666
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.50 E-value=4.5 Score=28.90 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.+|...+..+...|++++|...|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666666666666666666666666655
No 279
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=21 Score=39.82 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhccCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh----c-----ccchHHHHHHHHHHHhCC
Q 001619 305 FDWVVKLYERCLIPCADY--PEFWMRYVDFMESKGGREIASYALDRATQIFL----K-----RLPVIHLFNARYKEQIGD 373 (1043)
Q Consensus 305 ~e~~~~lyerAl~~~~~~--~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~----~-----~~p~iwl~~A~~E~~~g~ 373 (1043)
++++....|.|....+.. .+.|++-|.||-+.||.+.|.+.|.+....-. + ..-.+-+.|.+...-...
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 444445555555544433 46788888888888888877766655443211 1 011345556677777788
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~ 423 (1043)
+++|..+++++..=-..+.+++|...-.+-. .+|+.|-.+|-.++..+
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~msv--R~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYCMSV--RNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHHHHH--HhHHHHHHHHHHHcccc
Confidence 8899999988864112223444444333333 37888888887777653
No 280
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.16 E-value=4.7 Score=28.30 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=10.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCC
Q 001619 85 RLCSIDKVVEVFERAVQSATY 105 (1043)
Q Consensus 85 ~~~~~e~a~~lfeRAL~~~P~ 105 (1043)
+.|++++|+.+|++.+..+|.
T Consensus 12 ~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHCHHHHHHHHHHHHHHHSTT
T ss_pred HccCHHHHHHHHHHHHHHCcC
Confidence 344455555555555555444
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=77.02 E-value=4.5 Score=29.74 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 76 WRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 76 W~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
|..++.+..+.|++++|..+|+++|..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667788888889999999999997754
No 282
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.89 E-value=17 Score=38.72 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 339 REIASYALDRATQIFLK-----RLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 339 ~e~Ar~ilerA~~~~~~-----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
+..|...|++|+..-.. +...+...-+++..+.|++++|...|.+.+..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45677788888764211 11235556689999999999999999999864
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.31 E-value=6.1 Score=27.72 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCC
Q 001619 40 WTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLC 72 (1043)
Q Consensus 40 W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s 72 (1043)
+..+...+.+. ++.+++..+|+++++.+|.|
T Consensus 3 ~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKL--GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHH--CHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHc--cCHHHHHHHHHHHHHHCcCC
Confidence 34444444445 89999999999999999986
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.78 E-value=1e+02 Score=34.30 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619 455 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 455 g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~ 521 (1043)
+.....+++..+++-+-...|+. -.++.+.+++....++.+.+.+++.|++..+...+
T Consensus 98 ~~~~~~~ka~~~l~~l~~e~~~~---------~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 98 DTYESVEKALNALRLLESEYGNK---------PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred CChHHHHHHHHHHHHHHHhCCCC---------cHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 33345667777777765555543 23444556666557788888888888888887443
No 285
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=75.76 E-value=96 Score=36.00 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH---hcccchHHHHHHHHHHH---hCCHHHHHHHHHhhhhCCChhhHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQIF---LKRLPVIHLFNARYKEQ---IGDTSAARAAFPESYIDSDSRFIEKVT 397 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~---~~~~p~iwl~~A~~E~~---~g~~d~Ar~ll~ral~~~~~~~~~lw~ 397 (1043)
++-+.+.--|....+++....+.+..-.+. ..+.+.|-..||--.-| .|+.++|+.++..++........+++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 444444444555566777776666443321 22345677788888888 999999999999866533222222222
Q ss_pred HHHHHH----HH-----cCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHH
Q 001619 398 FKANME----RR-----LGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGG-RSHISIVDAVI 467 (1043)
Q Consensus 398 ~~a~lE----~~-----~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~-~~~leraR~l~ 467 (1043)
..+... .. ...+++|...|.+|.+.-... +++ +++|. ++...|. ......+|.+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--Y~G-----IN~At--------LL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--YSG-----INAAT--------LLMLAGHDFETSEELRKIG 286 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--cch-----HHHHH--------HHHHcCCcccchHHHHHHH
Confidence 221111 11 134788999999998862111 111 12211 2222232 11112333333
Q ss_pred ---HHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 001619 468 ---SNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTV 521 (1043)
Q Consensus 468 ---erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~~~ 521 (1043)
...+.... .+.....--....+++..-..|+.+.|..+++++++..|...
T Consensus 287 ~~l~~llg~kg----~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 287 VKLSSLLGRKG----SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHhhc----cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 11111100 010011111223344444567999999999999999976643
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.69 E-value=1.3e+02 Score=34.35 Aligned_cols=119 Identities=15% Similarity=0.069 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhcc---CC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc-cch--------HHHHHHHHH
Q 001619 304 DFDWVVKLYERCLIP---CA---DYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR-LPV--------IHLFNARYK 368 (1043)
Q Consensus 304 ~~e~~~~lyerAl~~---~~---~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~-~p~--------iwl~~A~~E 368 (1043)
.++++..-||.|+.. .. -.-.+......++-...|+++|.....+|..+.... ..+ +.+-.+--.
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 345555556666642 11 112456777777777788888888888887763221 011 111112223
Q ss_pred HHhCCHHHHHHHHHhhhhC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 369 EQIGDTSAARAAFPESYID-----SDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 369 ~~~g~~d~Ar~ll~ral~~-----~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
...|.+-.|.+.-+.|.+. ..+.+.+-..-++++.+..|+.|+|..-|+.|+..
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 4466666666666666541 12345566677899999999999999999999885
No 287
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=75.19 E-value=1.4e+02 Score=36.49 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=36.8
Q ss_pred HHHHHHhCCHHHHHHHHHhhhhCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 365 ARYKEQIGDTSAARAAFPESYIDSDSRFI-EKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~-~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.+..+.+++++|..+-++. |++. .+++-|+.+..+...+++|-+.|-+|=..
T Consensus 780 VqlHve~~~W~eAFalAe~h-----Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKH-----PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred hhheeecccchHhHhhhhhC-----ccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 34455667777777665443 3332 47888999988888899998888776543
No 288
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.62 E-value=1.5e+02 Score=33.06 Aligned_cols=144 Identities=11% Similarity=-0.012 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAV 100 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL 100 (1043)
+.|..+....+++|.+.-...-+.-.+=.. .++..+-.-|+.....+|.-.++-.-++.-..+.+-+.+|..|...
T Consensus 28 DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~-- 103 (459)
T KOG4340|consen 28 DAIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL-- 103 (459)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH--
Confidence 344444555556776655443332221112 3566677778888888887666655556555555555544433322
Q ss_pred HhcCCCHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 101 QSATYSVDVWFHYCSLSMST---FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 101 ~~~P~s~~LWl~Y~~~~~~~---~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
+-....|-..-+++.... .++.-.+|.+.+. +|-.- ....-+.-.-+.-+.|+++.|.+-|..++.+.
T Consensus 104 --~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en-~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 --LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSEN-EADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred --hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCC-ccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 122233333333322110 1344445555543 22100 00111111112223477888888888887654
No 289
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.24 E-value=1.4e+02 Score=32.71 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHH--------cCChHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-
Q 001619 286 DIQLKNWHDYLSFAEK--------QGDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLK- 355 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~--------~g~~e~~~~lyerAl~~~-~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~- 355 (1043)
...+.+|.++..+... +|.+---..+|.+.+..+ +..+.|-......--..||++.|...|++.-+...+
T Consensus 166 ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 166 ESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 4567899998776652 344555667788888765 667788888888888899999999999977654222
Q ss_pred ----ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 356 ----RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 356 ----~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
..-.+...-+-+..-.+|+-.|...|.+.+.....+-..+--+ |-..-.+|++..|.+..+.+++.
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK-ALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNK-ALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 1123555566666778899999988988875322221111111 12223358899999999999886
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.15 E-value=26 Score=38.84 Aligned_cols=50 Identities=2% Similarity=-0.017 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
+.++.+...+++.+...|+...+|...+......|+...|+..|++.=..
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999999876554
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=73.65 E-value=6.4 Score=28.93 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 326 WMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 326 Wl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
|..++..+...|++++|..+|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777777777776543
No 292
>PF12144 Med12-PQL: Eukaryotic Mediator 12 catenin-binding domain; InterPro: IPR021989 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length. It is found in the C-terminal region of the mediator of RNA polymerase II transcription subunit 12. Both development and carcinogenesis are driven by signal transduction within the canonical Wnt/beta-catenin pathway through both programmed and unprogrammed changes in gene transcription. Beta-catenin physically and functionally targets this PQL (proline-, glutamine-, leucine-rich) region of the Med12 subunit of Mediator to activate transcription. The beta-catenin transactivation domain binds directly to isolated Med12 and intact Mediator both in vitro and in vivo, and Mediator is recruited to Wnt-responsive genes in a beta-catenin-dependent manner. ; GO: 0008013 beta-catenin binding, 0016592 mediator complex
Probab=72.81 E-value=4.1 Score=41.73 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=43.3
Q ss_pred CcccCCCCCcc-ccCCccCC-CCCCcchhccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 001619 800 NWHEQQNPDRV-HRDLRFGY-RGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQ 866 (1043)
Q Consensus 800 n~~~~~~~~~~-~~~p~~~~-~~~~~~~~~q~~~~~~qq~~~~~~~~~~~~~~~~~~q~~~~~~~q~qq 866 (1043)
..+.+.....| .+++..|| .+.+|++.+++++.....+.+.+.+...+..++.++.......+|.||
T Consensus 109 q~~q~~p~~~Y~~lq~aqGYTmYgt~M~LQQ~~~q~~gvvsPsY~~r~Y~~aHp~SNPaLmerlRQmQQ 177 (204)
T PF12144_consen 109 QVRQMTPSPQYPGLQQAQGYTMYGTQMPLQQHPQQGGGVVSPSYNSRTYQAAHPSSNPALMERLRQMQQ 177 (204)
T ss_pred hhccCCCCCCCcccccccCcccccccccccccCCCCCeeeCCCCCCCCCCCCCCCCCchhhhhhhhccc
Confidence 45666666666 47777888 778889998888755445666676666665555555555444454443
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=71.91 E-value=1.6e+02 Score=32.24 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcH
Q 001619 71 LCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSV-----DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCH 145 (1043)
Q Consensus 71 ~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~-----~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~ 145 (1043)
..+..|..=+..+...|++++|.+.|++....+|.++ .|=+.|+.+ +. ++.+.|+..++|=++.-|.+..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~-~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KN-GEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hc-ccHHHHHHHHHHHHHhCCCCCC--
Confidence 3567777777778888999999999999998888765 344555544 33 6788999999999998888654
Q ss_pred HHHHHHHHHH
Q 001619 146 TMWDKYIEFE 155 (1043)
Q Consensus 146 ~IW~~yi~fe 155 (1043)
.=|..|++-.
T Consensus 107 ~dY~~YlkgL 116 (254)
T COG4105 107 ADYAYYLKGL 116 (254)
T ss_pred hhHHHHHHHH
Confidence 3344555433
No 294
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.32 E-value=29 Score=31.57 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCC
Q 001619 21 FGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPL 71 (1043)
Q Consensus 21 ~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~ 71 (1043)
.++..|+..|..||.|+.....+...+-.. ++.+.+...+-.+++..+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAA--GDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TT
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcc
Confidence 355677777777777777777776655544 6666666666666655544
No 295
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.24 E-value=8.3 Score=43.29 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhhCCChHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVD--VWFHYCSLSMSTFEDPNDVRRL 130 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~--LWl~Y~~~~~~~~~~~e~ar~l 130 (1043)
+.++.+...|-+++..+|.+-.+..+-+...+++.....+..=+.+|++.+|.+.. -|..|++-++ ++-+++++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll---g~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL---GNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh---hchHHHHHH
Confidence 55666666666666666666655555555555555555666666666666555442 4555555443 344555666
Q ss_pred HHHHHH
Q 001619 131 FKRALS 136 (1043)
Q Consensus 131 ferAL~ 136 (1043)
|..|++
T Consensus 205 l~~a~k 210 (377)
T KOG1308|consen 205 LALACK 210 (377)
T ss_pred HHHHHh
Confidence 655554
No 296
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.04 E-value=95 Score=36.25 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCcH--HHHHHHHH--HHHHcCChHHHHHHHHHHHHHHhc--ccchHHHH
Q 001619 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYP--EFWMRYVD--FMESKGGREIASYALDRATQIFLK--RLPVIHLF 363 (1043)
Q Consensus 290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~--~LWl~yAk--~~e~~g~~e~Ar~ilerA~~~~~~--~~p~iwl~ 363 (1043)
..|.....++ +.+++..|..+|+.++...+... .++..++. .+|...++..|...|++....... ...+.+..
T Consensus 133 ~~~~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~ 211 (379)
T PF09670_consen 133 REWRRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKE 211 (379)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 4666667666 47899999999999997533332 34444443 347778999999999988765221 00111222
Q ss_pred HHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL--GNFVAACDTYKEALETA 423 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~--G~~e~Ar~lyekale~~ 423 (1043)
..+.......+..+........+ .+...-+...+.+-+||. |.++.|...+-+++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 212 LVEVLKALESILSALEDKKQRQK--KLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHhhccchhhhhcccc--ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22222222222222222211111 113344666677777764 89999999999999973
No 297
>PRK12798 chemotaxis protein; Reviewed
Probab=69.75 E-value=2.3e+02 Score=33.23 Aligned_cols=196 Identities=15% Similarity=0.125 Sum_probs=115.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHhCC
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL--PVIHLFNARYKEQIGD 373 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~--p~iwl~~A~~E~~~g~ 373 (1043)
+-|..+.|++..++.++.+-.....+ ..|-....+|. .|+.++|++.|...--.+.+.. +.|-+.-+.+ ....+
T Consensus 88 ~iy~lSGGnP~vlr~L~~~d~~~~~d-~~L~~g~laY~--~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l-~~~~d 163 (421)
T PRK12798 88 LIYLLSGGNPATLRKLLARDKLGNFD-QRLADGALAYL--SGRGREARKLLAGVAPEYLPAELGAYLALVQGNL-MVATD 163 (421)
T ss_pred HhhHhcCCCHHHHHHHHHcCCCChhh-HHHHHHHHHHH--cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH-hcccC
Confidence 45666789999999998887653222 23333334443 5888999988865543322211 1222222222 23567
Q ss_pred HHHHHHHHHhhhhCCChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFT 451 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~--lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe 451 (1043)
..+|.++|+.+.-..+.+.++ -..+.+-+-...|++++...+-.+.+.. |...+. +...+..++...
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR------F~~S~Y-----A~~F~~~F~~~~ 232 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR------FRHSPY-----ASQFAQRFVDLV 232 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH------hccCch-----HHHHHHHHHHHH
Confidence 889999999887543444332 3344455556779999999888888887 443342 333333333333
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCC
Q 001619 452 MVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLD---LCGTIHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 452 ~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee---~~G~~~~a~~~~~ra~k~~p~~ 520 (1043)
.++++....++ ++..|..... +.. ..+|+..-+ .-|+.+-+..+-.|++......
T Consensus 233 ~~~~d~~~~~~----l~~~ls~~d~-------~~q---~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~ 290 (421)
T PRK12798 233 VRLDDEIRDAR----LVEILSFMDP-------ERQ---RELYLRIARAALIDGKTELARFASERALKLADPD 290 (421)
T ss_pred HhccccccHHH----HHHHHHhcCc-------hhH---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCC
Confidence 33333222233 4444432111 222 347777776 4699999999999999998543
No 298
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.52 E-value=1.9e+02 Score=32.22 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHhCCHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFN----ARYKEQIGDTSAA 377 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~----A~~E~~~g~~d~A 377 (1043)
..++..+-..|+......|.....-+-+|.-+.+.+.+.+|..|.... .+.+.+.-.- +-+....+++-.+
T Consensus 57 ~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~-----~D~~~L~~~~lqLqaAIkYse~Dl~g~ 131 (459)
T KOG4340|consen 57 LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLL-----LDNPALHSRVLQLQAAIKYSEGDLPGS 131 (459)
T ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHh-----cCCHHHHHHHHHHHHHHhcccccCcch
Confidence 346788899999998888999888888888888888887777665322 2334443333 3344567899999
Q ss_pred HHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 378 RAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 378 r~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
|.+++..-.+. .....+.-+-+..+.|+++.|.+-|..|++.
T Consensus 132 rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 132 RSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 99988664321 2334444455566779999999999999985
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.97 E-value=59 Score=32.93 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=42.5
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
..++.+++..+|. |+++..|..+++-+.-+.+....|++++|+.+|+....
T Consensus 22 ~~~~~~D~e~lL~-ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLD-ALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHH-HHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4567888888885 66676888999999999999999999999999998764
No 300
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.59 E-value=34 Score=42.58 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 127 VRRLFKRALSFVGKDY--LCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 127 ar~lferAL~~lp~~~--~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
.+..|.-|...++... ....+|..|+++.....+.+....+|.+|+..+
T Consensus 816 ~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sC 866 (913)
T KOG1972|consen 816 NTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDSC 866 (913)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcC
Confidence 4455544444333222 145899999999998888888899999998654
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.38 E-value=1.2e+02 Score=34.33 Aligned_cols=158 Identities=11% Similarity=0.003 Sum_probs=97.6
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhCCHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP---VIHLFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p---~iwl~~A~~E~~~g~~d~Ar 378 (1043)
.|+.-++...+++.|...|..--.|..--..+--.|+.+.-+..++|.+-..+++.| -+.-+||--+++.|-++.|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 567777888888888877776555544434444468888888888887765555555 34557888889999999999
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 001619 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRS 458 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~ 458 (1043)
+.-++|+.....++....- .+...+-.|.++++.+...+--+. .-.-||.++.-.| -++-|....+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha-~aHVlem~~r~Keg~eFM~~ted~---------Wr~s~mlasHNyW-H~Al~~iE~a--- 261 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHA-KAHVLEMNGRHKEGKEFMYKTEDD---------WRQSWMLASHNYW-HTALFHIEGA--- 261 (491)
T ss_pred HHHHhhccCCCcchHHHHH-HHHHHHhcchhhhHHHHHHhcccc---------hhhhhHHHhhhhH-HHHHhhhccc---
Confidence 9999999754444432222 233444458888888776554332 1234444443333 1111111112
Q ss_pred hHHHHHHHHHHHhhc
Q 001619 459 HISIVDAVISNALYS 473 (1043)
Q Consensus 459 ~leraR~l~erAl~~ 473 (1043)
.++.|..||++-+-+
T Consensus 262 eye~aleIyD~ei~k 276 (491)
T KOG2610|consen 262 EYEKALEIYDREIWK 276 (491)
T ss_pred chhHHHHHHHHHHHH
Confidence 256677777776543
No 302
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=68.04 E-value=9.8 Score=29.23 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHHcCChHHH
Q 001619 311 LYERCLIPCADYPEFWMRYVDFMESKGGREIA 342 (1043)
Q Consensus 311 lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~A 342 (1043)
.|.+||...|.....|+.||.|+..+|+.+.|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 57788888888888999999999888877433
No 303
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=68.03 E-value=2e+02 Score=32.49 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc------------
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP------------ 358 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p------------ 358 (1043)
.-..|-+.+ ..++...+..-.|+.+..+|...++-...+..+.+.| .+.++.++...+..|+..+|
T Consensus 102 ~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtP 179 (301)
T TIGR03362 102 RVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTP 179 (301)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCC
Confidence 333344443 3566677888888888877877777777778888888 56667777667766655433
Q ss_pred ------hHHHHH----------------------HHH------HHHhCCHHHHHHHHHhhhhCCC-hh-hHHHHHHHHHH
Q 001619 359 ------VIHLFN----------------------ARY------KEQIGDTSAARAAFPESYIDSD-SR-FIEKVTFKANM 402 (1043)
Q Consensus 359 ------~iwl~~----------------------A~~------E~~~g~~d~Ar~ll~ral~~~~-~~-~~~lw~~~a~l 402 (1043)
.-|+.- .+. ....|+++.|...++..+.... +. .....+..+++
T Consensus 180 Fad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l 259 (301)
T TIGR03362 180 FADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARL 259 (301)
T ss_pred CCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHH
Confidence 346531 111 2357788888888887543222 11 12233455788
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 001619 403 ERRLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 403 E~~~G~~e~Ar~lyekale~~ 423 (1043)
-+..|..+-|..+|+...+..
T Consensus 260 ~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 260 LEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 888899999999998887763
No 304
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.86 E-value=9 Score=25.41 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619 75 YWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 75 lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P 104 (1043)
.|..++......+++++|...|++++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455555555666667777777777766554
No 305
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=63 Score=37.49 Aligned_cols=132 Identities=10% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCCccHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-HHHH
Q 001619 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL----CS-IDKV 92 (1043)
Q Consensus 18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~----~~-~e~a 92 (1043)
.++.+...++.+|+.||+++.+|-...-.+.+..-.++..--.+.+++|+.+|.++..|. |=++.... ++ ..+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~-YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH-YRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH-HHHHHHHHHhcccccchhH
Confidence 566677888888888888888888887777764223466666788888888888888883 33332221 11 2233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhh-----CC---ChHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 001619 93 VEVFERAVQSATYSVDVWFHYCSLSMST-----FE---DPNDVRRLFKRALSFVGKDYLCHTMWDK 150 (1043)
Q Consensus 93 ~~lfeRAL~~~P~s~~LWl~Y~~~~~~~-----~~---~~e~ar~lferAL~~lp~~~~s~~IW~~ 150 (1043)
.....+++..++.++--|.----++... .| ..+..+.=++....++=+|..+...|.-
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 4456677777777788886544443311 12 1344555555555555444433445544
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.24 E-value=2.7e+02 Score=33.46 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHhc-CC-----CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHhh
Q 001619 87 CSIDKVVEVFERAVQSA-TY-----SVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYI-EFEISQQ 159 (1043)
Q Consensus 87 ~~~e~a~~lfeRAL~~~-P~-----s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi-~fe~~~~ 159 (1043)
++.+++...|.+|+..+ |. --++|.....+.- .+.+....+..+.-..+|.... .+-..++ +......
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~---dD~D~fl~l~~kiqt~lg~~~~--~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG---DDKDFFLRLQKKIQTKLGEGRG--SVLMQDVYKKYSENE 219 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhhccchH--HHHHHHHHHHhcccc
Confidence 44556666666666542 31 1246666555431 3444444444444444444321 1111111 2222345
Q ss_pred hhhhHHHHHHHHhcCCCccHHHH
Q 001619 160 RWSSLAQIFVQTLRFPSKKLHHY 182 (1043)
Q Consensus 160 ~~e~a~~iy~raL~~p~~~l~~~ 182 (1043)
+++++.+|..-.|+....+.|..
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHH
Confidence 67888888887777665555543
No 307
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=60 Score=36.10 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHH---HHHHHHHHHhCCHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIH---LFNARYKEQIGDTSAAR 378 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iw---l~~A~~E~~~g~~d~Ar 378 (1043)
.|++..+..+|..++...+...++-+.||..+...|+.+.|..+|.-.=.- ...+-| .++.++..+..+....-
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~---~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ---AQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc---chhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 678899999999999998999999999999999999999999999632111 111122 23567777766666555
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 379 AAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 379 ~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.+-.++-. .|+....-+..++...-.|+.+.|.+.+-..+..
T Consensus 224 ~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 224 DLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555543 3545666667777777778888887766555543
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.34 E-value=84 Score=34.87 Aligned_cols=86 Identities=16% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHH
Q 001619 34 SLDFDEWTSLLSEIENSCPDDIEMIGLVYDSF-LAEFPLCYGYWR----------------KYADHKARLCSIDKVVEVF 96 (1043)
Q Consensus 34 P~d~~~W~~~i~~le~~~~~~~~~~r~vyera-L~~~P~s~~lW~----------------~y~~~e~~~~~~e~a~~lf 96 (1043)
-.|+..|.+.++-++... ..+++++++..-. =..+|...-.|- ..+.+..+.|.+.+|..+.
T Consensus 224 k~Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 224 KYDVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred cccHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 457777887777655421 3444444333222 223344443442 2223334456666666666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Q 001619 97 ERAVQSATYSVDVWFHYCSLSMST 120 (1043)
Q Consensus 97 eRAL~~~P~s~~LWl~Y~~~~~~~ 120 (1043)
.|++..+|.+...|..+.+.+...
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATL 326 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHh
Confidence 666666666666666666665555
No 309
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=64.22 E-value=1.8e+02 Score=37.10 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHh--cccchHHHHHHHHHHH
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG---GREIASYALDRATQIFL--KRLPVIHLFNARYKEQ 370 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g---~~e~Ar~ilerA~~~~~--~~~p~iwl~~A~~E~~ 370 (1043)
+..+.+.|+.+++..++.++= .-+.+..-.+.|..+.+.. |+-+++...+|+-..+. +.....+..||.|+.+
T Consensus 714 L~sy~~~g~~erA~glwnK~Q--V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 714 LQSYLEEGRIERASGLWNKDQ--VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHhhhHHHHHHhHHhhCc--CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 334445566666666666554 1222333334444433322 45555666666554311 1112344556666666
Q ss_pred hCCHHHHHHHHHhhh
Q 001619 371 IGDTSAARAAFPESY 385 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral 385 (1043)
...-+.|.++|.++-
T Consensus 792 ~~qkkaAkk~f~r~e 806 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLE 806 (1088)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666653
No 310
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=1.3e+02 Score=34.14 Aligned_cols=89 Identities=12% Similarity=0.010 Sum_probs=53.0
Q ss_pred HHHcCChHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCH
Q 001619 333 MESKGGREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNF 409 (1043)
Q Consensus 333 ~e~~g~~e~Ar~ilerA~~~~~~~---~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~ 409 (1043)
+-+..++..|+..|.++++.-+.+ ++.++...|-...-.|||-.|.+=..+|+. ..|++++.+++-+.....+..+
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-LKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhhhhhhHHHHHHHHH
Confidence 334445666667777666652221 123444455555667777777777777774 4677777666665555555566
Q ss_pred HHHHHHHHHHHHH
Q 001619 410 VAACDTYKEALET 422 (1043)
Q Consensus 410 e~Ar~lyekale~ 422 (1043)
+.|....+.++..
T Consensus 170 ~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 170 AEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHhhhhhh
Confidence 6676666666553
No 311
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.18 E-value=8.5 Score=40.87 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=43.4
Q ss_pred HcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 301 ~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
+.+|.+.+..+|.+|+...|.+..=|.++..+.++.|+++.|...|+..+++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3577788888888888888888888888888888888888888888877766
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.49 E-value=2.1e+02 Score=30.12 Aligned_cols=95 Identities=16% Similarity=0.053 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHH
Q 001619 326 WMRYVDFMESKGGREIASYALDRATQIFLKR--LPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1043)
Q Consensus 326 Wl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~--~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE 403 (1043)
=+..|+-+...|++++|...|.-++...... .+-+-+..|......|.+|.|.+++...-. ..-. ..+-....++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~-~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWA-AIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHH-HHHHHHhhhHH
Confidence 4566777777899999999998877431110 123556678888899999999999975532 1111 22344567788
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 001619 404 RRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 404 ~~~G~~e~Ar~lyekale~ 422 (1043)
...|+-+.||+-|+++++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 8889999999999999996
No 313
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.42 E-value=51 Score=30.02 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 396 VTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 396 w~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
++..+.+...+|+.++|...+++||.....
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445566777789999999999999887543
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.69 E-value=9.1 Score=40.66 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=49.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 330 VDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 330 Ak~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
++.+...||.+.|.++|.+|+.. .+....-|+..+++.++.|+++.|-+.|++.++.
T Consensus 2 a~~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44455678999999999999987 5666678999999999999999999999999863
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.56 E-value=43 Score=30.50 Aligned_cols=53 Identities=21% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHcCChHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHhCCHHHHHHHHHhhhh
Q 001619 334 ESKGGREIASYALDRATQIFLKRL--------PVIHLFNARYKEQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 334 e~~g~~e~Ar~ilerA~~~~~~~~--------p~iwl~~A~~E~~~g~~d~Ar~ll~ral~ 386 (1043)
.+.||+..|.+.+.+.+....... ....+..|.+....|++++|...++.|+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777777777776666533211 12244456677778888888888888875
No 316
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=60.45 E-value=79 Score=38.60 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHhhCCChHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFER---AVQSATYSVDVWFHYCSLSMSTFEDPNDVRR 129 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeR---AL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~ 129 (1043)
.....+..+|+++++..|.+--.-.+.+.+..+ ...+..+++- -+... -+.+||+.|+...++...+.+..++
T Consensus 358 ~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e 433 (547)
T PF14929_consen 358 NNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEE 433 (547)
T ss_pred ccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHH
Confidence 366677888888888888876655555554432 3345555552 22333 4788888888887775455554455
Q ss_pred HHHHHHH
Q 001619 130 LFKRALS 136 (1043)
Q Consensus 130 lferAL~ 136 (1043)
-...|++
T Consensus 434 ~~~~~l~ 440 (547)
T PF14929_consen 434 DHKSALK 440 (547)
T ss_pred HHHHHHh
Confidence 5555543
No 317
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.26 E-value=4.1e+02 Score=32.46 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHhcc------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 001619 304 DFDWVVKLYERCLIP------------CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQI 371 (1043)
Q Consensus 304 ~~e~~~~lyerAl~~------------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~ 371 (1043)
.++.+...|.-|++. .|.+.+--+..|.+....||.+.|+.+.+||+-.+-.. | .+.|..-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a----~--hp~F~~~s 326 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRA----L--HPNFIPFS 326 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH----h--cccccccc
Confidence 466777777777753 47777888999999999999999999999998653211 0 01111111
Q ss_pred CCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 372 GDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 372 g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
|+.-- =| +.-. ...+.....+|+....+.|-+..|.+..+-.+.+
T Consensus 327 g~cRL---~y--~~~e-NR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 327 GNCRL---PY--IYPE-NRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred ccccC---cc--cchh-hHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 11000 00 0000 0111223445667777779999999998888886
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.20 E-value=14 Score=43.38 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=67.2
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
.++++.|+.+|.+||...|++..+|-..+..+.+.+++..|..=+.+|++. -|.....++..+..-.+.+.+.+|+..|
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-DPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-CchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 467899999999999999999999999988778888888888888888876 3444445555666667777888888888
Q ss_pred Hhhhh
Q 001619 382 PESYI 386 (1043)
Q Consensus 382 ~ral~ 386 (1043)
+....
T Consensus 96 ~~~~~ 100 (476)
T KOG0376|consen 96 EKVKK 100 (476)
T ss_pred HHhhh
Confidence 88765
No 319
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.02 E-value=14 Score=43.29 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=70.0
Q ss_pred HcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 001619 335 SKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACD 414 (1043)
Q Consensus 335 ~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~ 414 (1043)
..++++.|...|.+|++. .++|..+|-.-+....+.+++-.|..=+.+|++ ..|++.+-|.+.+..--.+|.+.+|+.
T Consensus 16 ~~~~fd~avdlysKaI~l-dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie-~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL-DPNCAIYFANRALAHLKVESFGGALHDALKAIE-LDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred ccchHHHHHHHHHHHHhc-CCcceeeechhhhhheeechhhhHHHHHHhhhh-cCchhhheeeeccHHHHhHHHHHHHHH
Confidence 346789999999999988 778887777777667788888888888888885 457788877777666667788999999
Q ss_pred HHHHHHHH
Q 001619 415 TYKEALET 422 (1043)
Q Consensus 415 lyekale~ 422 (1043)
.|++....
T Consensus 94 ~l~~~~~l 101 (476)
T KOG0376|consen 94 DLEKVKKL 101 (476)
T ss_pred HHHHhhhc
Confidence 99998887
No 320
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=55.35 E-value=28 Score=38.61 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHH-HHHHHHHH
Q 001619 284 LDDIQLKNWHDYLSFAEKQGDF-------DWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS-YALDRATQ 351 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g~~-------e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar-~ilerA~~ 351 (1043)
.++..++.|...+.+..+.+.+ ..++.+|++.|-.--.+.+||.+|..-.+.....+.+| .++.||+.
T Consensus 162 ~~~~~fe~W~s~f~lDeK~eEI~~LL~gnpdir~ly~~lVP~~VshetFW~RYFy~v~kleq~e~~r~~l~~rai~ 237 (331)
T KOG2690|consen 162 DDLEDFELWLSPFSLDEKTEEISELLEGNPDIRKLYEDLVPSEVSHETFWHRYFYKVEKLEQEEAKRKELLSRAIS 237 (331)
T ss_pred CCHHHHHHHhhccCcccchHHHHHHHhcCccHHHHHHHhCcccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5667889999888887655432 25789999999777889999999976655555555555 34555554
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.25 E-value=5.4e+02 Score=32.60 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001619 445 TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKL 516 (1043)
Q Consensus 445 ~~~~~fe~~~g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~ 516 (1043)
..+.-|+++..+-+ +++|+.|..+ . .+++.-+.+.-.-||.+.|.++..+-++.
T Consensus 623 k~LLPFLr~s~~Y~-lekA~eiC~q-------~----------~~~~E~VYlLgrmGn~k~AL~lII~el~d 676 (846)
T KOG2066|consen 623 KKLLPFLRKSQNYN-LEKALEICSQ-------K----------NFYEELVYLLGRMGNAKEALKLIINELRD 676 (846)
T ss_pred hhhhHHHHhcCCCC-HHHHHHHHHh-------h----------CcHHHHHHHHHhhcchHHHHHHHHHHhhC
Confidence 44556666665543 5666655542 1 12223333345568888888887654443
No 322
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=55.15 E-value=3.2e+02 Score=29.95 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchH-HHHH
Q 001619 289 LKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI-HLFN 364 (1043)
Q Consensus 289 ~~~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~i-wl~~ 364 (1043)
...|.+=+.-+...|++++|...|++.....|. ....=++.+.-.-+.++.+.|+..++|-++. .|..+.+ |..|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-yP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-YPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCChhHHHH
Confidence 445655555566689999999999999976543 3455555555555779999999999999987 4444432 4444
Q ss_pred HHHHHH-------hCCHHHHHH---HHHhhhhCCC-hhh---------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 365 ARYKEQ-------IGDTSAARA---AFPESYIDSD-SRF---------------IEKVTFKANMERRLGNFVAACDTYKE 418 (1043)
Q Consensus 365 A~~E~~-------~g~~d~Ar~---ll~ral~~~~-~~~---------------~~lw~~~a~lE~~~G~~e~Ar~lyek 418 (1043)
.+-... ..+...++. -|+..+...+ ..+ ...=+.-+++-.+.|.+..|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 333322 223333443 4444443211 111 11111224555666888888888888
Q ss_pred HHHH
Q 001619 419 ALET 422 (1043)
Q Consensus 419 ale~ 422 (1043)
+++.
T Consensus 193 v~e~ 196 (254)
T COG4105 193 VLEN 196 (254)
T ss_pred HHhc
Confidence 8886
No 323
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=54.75 E-value=7.9 Score=49.22 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHH
Q 001619 408 NFVAACDTYKEALE 421 (1043)
Q Consensus 408 ~~e~Ar~lyekale 421 (1043)
.-..++-+|+.+-+
T Consensus 904 h~~at~~ll~~gsd 917 (2131)
T KOG4369|consen 904 HQAATLSLLQPGSD 917 (2131)
T ss_pred ccHHHHHHhcccch
Confidence 33444555555444
No 324
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.56 E-value=1e+02 Score=35.67 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL 66 (1043)
.+-..|..+|+.++..+.+.+.+... |+...+..+.||||
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~--gd~~~A~~lleRAL 67 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQ--GDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 34444444555555554444444433 44444444444444
No 325
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.55 E-value=69 Score=31.19 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHH
Q 001619 144 CHTMWDKYIEFEI 156 (1043)
Q Consensus 144 s~~IW~~yi~fe~ 156 (1043)
..++|...+.+..
T Consensus 124 ~~~lw~~~~~~~l 136 (140)
T smart00299 124 NPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHHH
Confidence 4578888887654
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=54.15 E-value=1.2e+02 Score=30.50 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=43.0
Q ss_pred cCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhC
Q 001619 336 KGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYID 387 (1043)
Q Consensus 336 ~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~ 387 (1043)
.++++++..+++ |++++.|+.+++-+.-+.+....|++++|..+|+.....
T Consensus 23 ~~d~~D~e~lLd-ALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLD-ALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHH-HHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 678888888886 556668889989888899999999999999999988653
No 327
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=54.04 E-value=4e+02 Score=30.71 Aligned_cols=90 Identities=13% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHhc-ccc----hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC--------hhh-HHHHHH
Q 001619 333 MESKGGREIASYALDRATQIFLK-RLP----VIHLFNARYKEQIGDTSAARAAFPESYIDSD--------SRF-IEKVTF 398 (1043)
Q Consensus 333 ~e~~g~~e~Ar~ilerA~~~~~~-~~p----~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~--------~~~-~~lw~~ 398 (1043)
....+.++.+.+.|++|.++... +.+ .|.+....|.-+..++++|.-...+|.+... .++ ....+.
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 33446688889999999887443 222 4788889999999999999888877764211 111 112222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 399 KANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 399 ~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
.+--.+..|.+-.|.+..++|.++
T Consensus 212 maValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHH
Confidence 233345567777777777777775
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.38 E-value=20 Score=23.61 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001619 325 FWMRYVDFMESKGGREIASYALDRATQ 351 (1043)
Q Consensus 325 LWl~yAk~~e~~g~~e~Ar~ilerA~~ 351 (1043)
.|..++..+...|+++.|...|.++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444444555555555544443
No 329
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.30 E-value=3.5e+02 Score=29.30 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhc-cCCCcHHHHHHHHHHH-HHcCChHHHHHHHHHHHHH
Q 001619 306 DWVVKLYERCLI-PCADYPEFWMRYVDFM-ESKGGREIASYALDRATQI 352 (1043)
Q Consensus 306 e~~~~lyerAl~-~~~~~~~LWl~yAk~~-e~~g~~e~Ar~ilerA~~~ 352 (1043)
+.|..+-+..+. .+|-.-.|-++|+-|+ +..|+.++|..+-..|+..
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344444444432 2344456666666665 4466666666666666554
No 330
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=51.13 E-value=33 Score=26.42 Aligned_cols=28 Identities=14% Similarity=-0.128 Sum_probs=13.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001619 62 YDSFLAEFPLCYGYWRKYADHKARLCSI 89 (1043)
Q Consensus 62 yeraL~~~P~s~~lW~~y~~~e~~~~~~ 89 (1043)
|.+++...|.....|+.|++|....|+.
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 3444444444444444444444444443
No 331
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.19 E-value=1.4e+02 Score=34.58 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCC
Q 001619 108 DVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFP 175 (1043)
Q Consensus 108 ~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~~p 175 (1043)
+||..|... |+++.|.+.|-||+..|...-+...+|..+++.-.-.++|..+.....++...|
T Consensus 155 Dl~dhy~~c-----G~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 155 DLGDHYLDC-----GQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHh-----ccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 477777665 999999999999998886544445788888877777788888877777777665
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.75 E-value=1.7e+02 Score=26.59 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcC
Q 001619 60 LVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVG 139 (1043)
Q Consensus 60 ~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp 139 (1043)
..+++.+..+|.+......++......|+++.|...|-..|...+.. +-+.+|+.+=..+..+|
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~----------------~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY----------------EDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC----------------CCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------cccHHHHHHHHHHHHcC
Confidence 35778899999999999999999988899999988888888775422 23457777777777776
Q ss_pred C
Q 001619 140 K 140 (1043)
Q Consensus 140 ~ 140 (1043)
.
T Consensus 73 ~ 73 (90)
T PF14561_consen 73 P 73 (90)
T ss_dssp T
T ss_pred C
Confidence 5
No 333
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=48.00 E-value=19 Score=45.98 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.2
Q ss_pred CCccccCC
Q 001619 763 SSAPIQTR 770 (1043)
Q Consensus 763 ~~~~~~~~ 770 (1043)
.||++|.+
T Consensus 1505 ~~p~ipt~ 1512 (2131)
T KOG4369|consen 1505 IPPPIPTE 1512 (2131)
T ss_pred CCCCCcHH
Confidence 34444433
No 334
>PRK10941 hypothetical protein; Provisional
Probab=46.88 E-value=91 Score=34.55 Aligned_cols=59 Identities=5% Similarity=-0.152 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCC
Q 001619 84 ARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYL 143 (1043)
Q Consensus 84 ~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~ 143 (1043)
.+.+++++|..+-++.|...|.++..|.+-+-.+... +....|+.=|+.-++.+|.+..
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchh
Confidence 4456788888888888888888888887766655555 6777888888888888887764
No 335
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.27 E-value=4.3e+02 Score=28.88 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 360 IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 360 iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.+.|+.+....|++-++.+--...+. ..++.++.+.+.+.--...=|..+|++-|.++|++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~-~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR-HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 666777777777877777666555553 34556776776666555556888999999999997
No 336
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.85 E-value=3.4e+02 Score=29.61 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=57.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhccC--------CC----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIPC--------AD----------YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL 357 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~~--------~~----------~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~ 357 (1043)
.+-+.+.|++.+|...|..||... |. ...|.++|+..+...|++=++..--...++. .+.+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~-~~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCch
Confidence 333334678889999999988631 22 2245677777776666654433333333322 2344
Q ss_pred chHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhh
Q 001619 358 PVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF 392 (1043)
Q Consensus 358 p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~ 392 (1043)
.+.++..|+-....=|.++|+.=|.+++.. .|..
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l-dpsl 297 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL-DPSL 297 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-Chhh
Confidence 455666666666667888899989888853 4433
No 337
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=43.01 E-value=1.8e+02 Score=28.13 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=36.9
Q ss_pred HcCChHHHHHHHHHHhccC-----------CCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHHH---Hhcccch
Q 001619 301 KQGDFDWVVKLYERCLIPC-----------ADYPEFW----MRYVDFMESKGGREIASYALDRATQI---FLKRLPV 359 (1043)
Q Consensus 301 ~~g~~e~~~~lyerAl~~~-----------~~~~~LW----l~yAk~~e~~g~~e~Ar~ilerA~~~---~~~~~p~ 359 (1043)
+.+++-+++-.|..|+... .+-..+| .+.|.|....||.+-..+.++-|-+. ..|.||.
T Consensus 13 ~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp~ 89 (140)
T PF10952_consen 13 KEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCPN 89 (140)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCCC
Confidence 4566667777777777421 0111223 46788888888888888888777553 3455653
No 338
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.61 E-value=1.7e+02 Score=34.08 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=55.3
Q ss_pred HHHHhCCCCHHHHHHHHHHH-HhcC-----C----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Q 001619 28 EFIAEGSLDFDEWTSLLSEI-ENSC-----P----DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLC--SIDKVVEV 95 (1043)
Q Consensus 28 ~~i~~nP~d~~~W~~~i~~l-e~~~-----~----~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~--~~e~a~~l 95 (1043)
+.+..||.-+-.|.--=..+ +... | .-++.--.+.+.+|+.+|.+|..|..-.-...+++ ++..=..+
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~l 133 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQL 133 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34567888777776421100 1000 0 12233345667777888888888877666655553 45666777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh
Q 001619 96 FERAVQSATYSVDVWFHYCSLSMST 120 (1043)
Q Consensus 96 feRAL~~~P~s~~LWl~Y~~~~~~~ 120 (1043)
.+++|+.+|.+.--| .|-+|+...
T Consensus 134 cek~L~~D~RNfh~W-~YRRfV~~~ 157 (421)
T KOG0529|consen 134 CEKALKQDPRNFHAW-HYRRFVVEQ 157 (421)
T ss_pred HHHHHhcCcccccch-HHHHHHHHH
Confidence 888888888777777 566665443
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.18 E-value=4.5e+02 Score=31.43 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCChHHHHH-------HHHHHhcc-----------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVK-------LYERCLIP-----------CADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~-------lyerAl~~-----------~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
.-.+.+.|+++.|-++.|.. -|+=||.. ..+....|.+.++.....|+++.|...|.++-..
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 34566778887776655443 34444432 1345567777777777777777777766654322
Q ss_pred HhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001619 353 FLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 353 ~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyeka 419 (1043)
..+.+ +....|+.+.-+++.+.|....... . .+..+ .-+|+++++.+++.++
T Consensus 377 -----~~L~l----Ly~~~g~~~~L~kl~~~a~~~~~~n-~-af~~~----~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 -----SGLLL----LYSSTGDREKLSKLAKIAEERGDIN-I-AFQAA----LLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHH----HHHHCT-HHHHHHHHHHHHHTT-HH-H-HHHHH----HHHT-HHHHHHHHHHT
T ss_pred -----cccHH----HHHHhCCHHHHHHHHHHHHHccCHH-H-HHHHH----HHcCCHHHHHHHHHHc
Confidence 22222 2345667766666666665321111 1 11111 1236777776666543
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.61 E-value=80 Score=37.33 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHH
Q 001619 391 RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSR 441 (1043)
Q Consensus 391 ~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar 441 (1043)
++.++.+...-+....|....|...|.+++.. |+..|.+|+..|.
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~v------fh~nPrlWLRlAE 377 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV------FHRNPRLWLRLAE 377 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH------HhcCcHHHHHHHH
Confidence 34556666666666779999999999999997 6677999977753
No 341
>KOG3521 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=40.35 E-value=5.9e+02 Score=31.57 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001619 61 VYDSFLAEFPLCYGYWRKYADHKARLCSI--DKVVEVFERAVQSATYSVDVWFHYCSL 116 (1043)
Q Consensus 61 vyeraL~~~P~s~~lW~~y~~~e~~~~~~--e~a~~lfeRAL~~~P~s~~LWl~Y~~~ 116 (1043)
.|-|+|..+ .++...++.-.-+.|-. -+++.+|......+-.+..+|...+.=
T Consensus 191 ~YIrkL~~~---tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P 245 (846)
T KOG3521|consen 191 RYIRKLLRY---TDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEP 245 (846)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 344444433 34444444433333321 145556666666655566777666543
No 342
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.68 E-value=3.5e+02 Score=32.92 Aligned_cols=62 Identities=8% Similarity=-0.068 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 001619 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRL--GNFVAACDTYKEAL 420 (1043)
Q Consensus 359 ~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~--G~~e~Ar~lyekal 420 (1043)
-+|-+|+.-..+.+++..||.-|+++++....+-.++....+++-+-- .++..+|++|+...
T Consensus 588 ~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhla 651 (1141)
T KOG1811|consen 588 GAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLA 651 (1141)
T ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhc
Confidence 478888877788888888888888877533222233344444443311 13445555554433
No 343
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=39.12 E-value=1.6e+02 Score=34.01 Aligned_cols=82 Identities=15% Similarity=-0.001 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcCCCCCc------HHHHHHHHHHHHHhhhh--h
Q 001619 91 KVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLC------HTMWDKYIEFEISQQRW--S 162 (1043)
Q Consensus 91 ~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~lp~~~~s------~~IW~~yi~fe~~~~~~--e 162 (1043)
....++..++..+|...++|..+..++.+. .-.+..++.++.|+..+-..... ..+=.. ++.....+.. .
T Consensus 107 ~~~~ll~~arq~FpD~SDl~~aLreLl~r~-kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~-Ak~Fs~~~~lsa~ 184 (372)
T PRK15338 107 ALEEFLRQARKLFPDPSDLVLVLRELLRRK-QLEEIVRKKLESLLKHVEEETDPKTLKAGINCALK-ARLFGKALSLKPG 184 (372)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHHhCc-cCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHH-HHHHHhhcCCCHH
Confidence 345788999999999999999999887754 34455777787777765222110 011111 1222223333 6
Q ss_pred hHHHHHHHHhcC
Q 001619 163 SLAQIFVQTLRF 174 (1043)
Q Consensus 163 ~a~~iy~raL~~ 174 (1043)
..|.+|+..|..
T Consensus 185 ~LR~lYR~Fl~~ 196 (372)
T PRK15338 185 LLRASYRQFLQS 196 (372)
T ss_pred HHHHHHHHHHhc
Confidence 678888888764
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.07 E-value=4.9e+02 Score=27.47 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 303 GDFDWVVKLYERCLIPC-ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 303 g~~e~~~~lyerAl~~~-~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
+....+-..|+.++... .+.++.=-...+|....|. .+|. ..--+..|+-+...|++++|...+
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~-----t~Ya----------~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGK-----TIYA----------VLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccc-----cHHH----------HHHHHHHHHHHHhhccHHHHHHHH
Confidence 34567888899888642 3333333333333332221 1110 012334556667799999999999
Q ss_pred HhhhhCCChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCCch
Q 001619 382 PESYIDSDSRFIE--KVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSH 459 (1043)
Q Consensus 382 ~ral~~~~~~~~~--lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ 459 (1043)
+.++.......+. +=.+.+.+-...|.+|.|.++++..-+. .+..++ ...--......|+.
T Consensus 113 ~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------~w~~~~-------~elrGDill~kg~k-- 175 (207)
T COG2976 113 KQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------SWAAIV-------AELRGDILLAKGDK-- 175 (207)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------cHHHHH-------HHHhhhHHHHcCch--
Confidence 9998644333332 2334455666668888888877654442 111111 10001111223443
Q ss_pred HHHHHHHHHHHhhcCCC
Q 001619 460 ISIVDAVISNALYSRPD 476 (1043)
Q Consensus 460 leraR~l~erAl~~~p~ 476 (1043)
..||.-+++|+...++
T Consensus 176 -~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 176 -QEARAAYEKALESDAS 191 (207)
T ss_pred -HHHHHHHHHHHHccCC
Confidence 4699999999987643
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=38.91 E-value=68 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 325 FWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 325 LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
....++.++...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3456667777777777777777777765
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.76 E-value=7.8e+02 Score=30.25 Aligned_cols=82 Identities=17% Similarity=0.023 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHhCCHHHHHHHHH
Q 001619 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLP-VIHLFNARYKEQIGDTSAARAAFP 382 (1043)
Q Consensus 305 ~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~-~g~~e~Ar~ilerA~~~~~~~~p-~iwl~~A~~E~~~g~~d~Ar~ll~ 382 (1043)
.+.+..+.-.++..++....|.. .|.|||+ .|++-+|...+.+|+-...+... -+.+..|-++.|.|-.-.|.-|+.
T Consensus 195 ~~~~~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred HHHHHHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 45666777777777777766654 4556666 78999999999999866444333 256778889999999999999998
Q ss_pred hhhhC
Q 001619 383 ESYID 387 (1043)
Q Consensus 383 ral~~ 387 (1043)
-|+..
T Consensus 274 AA~~d 278 (886)
T KOG4507|consen 274 AALDD 278 (886)
T ss_pred hhccC
Confidence 88753
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.92 E-value=1.1e+02 Score=33.97 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=49.4
Q ss_pred HHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCC
Q 001619 365 ARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFH 430 (1043)
Q Consensus 365 A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p 430 (1043)
+.....+|++.+|..+-++++.. .+-....|...+.+...+|+--+|.+-|++.-+...+.++..
T Consensus 286 a~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 45567899999999999999863 444456788888888888998888888887776655554443
No 348
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=37.69 E-value=3.1e+02 Score=26.50 Aligned_cols=34 Identities=15% Similarity=-0.053 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~ 86 (1043)
+....+...++.++...+.+..+-..++.+..+.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3445555566666666666666666666665543
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.60 E-value=52 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=14.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 001619 328 RYVDFMESKGGREIASYALDRAT 350 (1043)
Q Consensus 328 ~yAk~~e~~g~~e~Ar~ilerA~ 350 (1043)
.+|+-|...||.+.||.+++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 45566666666666666666555
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=37.54 E-value=54 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=8.5
Q ss_pred HHHHHHHhCCHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll 381 (1043)
.+......|++++|+.++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444455555555444
No 351
>PRK10941 hypothetical protein; Provisional
Probab=37.53 E-value=1.9e+02 Score=32.11 Aligned_cols=54 Identities=13% Similarity=-0.061 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s 106 (1043)
++.+++.++.++.|...|.++..|..-.-+....|.+..|+.=|+..|+.||..
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 344444444444444444444444444444444444444444444444444433
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=37.46 E-value=1.9e+02 Score=30.59 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHhCCHHHH
Q 001619 320 ADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKR---LPVIHLFNARYKEQIGDTSAA 377 (1043)
Q Consensus 320 ~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~---~p~iwl~~A~~E~~~g~~d~A 377 (1043)
-..+++=..+|.||.+ -|.++|+.+|-+++..+.++ +|+|....|.+....|+++.|
T Consensus 138 l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 138 LETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3567788888888763 47788888888888875544 456666777777777777665
No 353
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.30 E-value=6.1e+02 Score=28.06 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=84.2
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHH-HHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKG-GREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTS-AARA 379 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g-~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d-~Ar~ 379 (1043)
...-.||..+-+.||..+|-..++|.-.-..+...+ ++.+-...+++.+.- ++++-.||----.+.+..|++. +-..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchHH
Confidence 445679999999999999999999987666665443 566667777777766 4455568887777777888877 6667
Q ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 380 ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.++++.. ..+..-+|...-=.-+.++.++.-.+.....|+.
T Consensus 135 f~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 135 FTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777753 3344456665444445567788777777777775
No 354
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.53 E-value=3.5e+02 Score=31.57 Aligned_cols=68 Identities=12% Similarity=0.208 Sum_probs=48.0
Q ss_pred hCCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 001619 32 EGSLDF---DEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYG--YWRKYADHK--ARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 32 ~nP~d~---~~W~~~i~~le~~~~~~~~~~r~vyeraL~~~P~s~~--lW~~y~~~e--~~~~~~e~a~~lfeRAL~~ 102 (1043)
.||+.+ ..|.++.+++.. .++..+..+|+.++...|.+.+ .+..+++-. ...-++.+|.+.|++.+..
T Consensus 124 ~~p~~~~~~~~~~~a~~l~n~---~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 124 ENPYEVFGDREWRRAKELFNR---YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556544 678888886655 7999999999999988666655 333332211 2345788999999998886
No 355
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.38 E-value=6.3e+02 Score=27.95 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCC-----ChhhHHHHHHHHHH
Q 001619 328 RYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDS-----DSRFIEKVTFKANM 402 (1043)
Q Consensus 328 ~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~-----~~~~~~lw~~~a~l 402 (1043)
.|+.++.-+|.+.-....|.+.++.+++..|.+--....+-...|+++.|...|++.-+.. .-....+.+..+.+
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3455555555666666677776665445566666667777778888888888877543211 01112233333333
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 001619 403 ERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 403 E~~~G~~e~Ar~lyekale~ 422 (1043)
---..|+.+|...|++++..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred eecccchHHHHHHHhhcccc
Confidence 33335666666667666664
No 356
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.14 E-value=1.2e+03 Score=30.93 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHcCChHHH
Q 001619 286 DIQLKNWHDYLSFAEKQGDFDWV 308 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g~~e~~ 308 (1043)
....++|..++-++.+...++.|
T Consensus 1351 ~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1351 AEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHH
Confidence 35678888888777655555443
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=35.62 E-value=1.7e+02 Score=30.87 Aligned_cols=81 Identities=15% Similarity=0.016 Sum_probs=49.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHcCC
Q 001619 332 FMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSR---FIEKVTFKANMERRLGN 408 (1043)
Q Consensus 332 ~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~---~~~lw~~~a~lE~~~G~ 408 (1043)
|.|...+-+.|+..|-++-..-.=+.+++-.+.|-|.. .-+.++|+.+|-++++...++ ..+++...+.+-.+.|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44544333566666654432211134567777777765 557788888888888633221 35677777888888888
Q ss_pred HHHHH
Q 001619 409 FVAAC 413 (1043)
Q Consensus 409 ~e~Ar 413 (1043)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87764
No 358
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.27 E-value=7.2e+02 Score=28.26 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Q 001619 393 IEKVTF--KANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 393 ~~lw~~--~a~lE~~~G~~e~Ar~lyekale~ 422 (1043)
+.+|++ .+...+++|.+.+|.+.|+...+.
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 344443 467778899999999999877775
No 359
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.18 E-value=6.5e+02 Score=27.77 Aligned_cols=176 Identities=11% Similarity=-0.032 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC--hhhHHHHHHHHH
Q 001619 327 MRYVDFMESKGG---REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD--SRFIEKVTFKAN 401 (1043)
Q Consensus 327 l~yAk~~e~~g~---~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~--~~~~~lw~~~a~ 401 (1043)
..+|+.+...+. .++|..+++-+-.- .++.+.+++...++..+.++.+.+.+++.+++.... ....+..+..+.
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK 166 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 334444444443 34455554433322 345567887777888888999999999999987533 123344444443
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHhhcCCCcc
Q 001619 402 MERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHG---GRSHISIVDAVISNALYSRPDVL 478 (1043)
Q Consensus 402 lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g---~~~~leraR~l~erAl~~~p~~~ 478 (1043)
..... +...|...+++.|-.+. .+..-. |+..+-. ...|. ....+ ...+++.+..++++. .....
T Consensus 167 ~l~~~-~~~~a~~~ld~~l~~r~----~~~~~~-~~e~~vl-~~~~~--~~~~~~~~~~~~i~~l~~~~~~v-~~~~~-- 234 (278)
T PF08631_consen 167 QLAEK-SPELAAFCLDYLLLNRF----KSSEDQ-WLEKLVL-TRVLL--TTQSKDLSSSEKIESLEELLSIV-EHSLG-- 234 (278)
T ss_pred HHHhh-CcHHHHHHHHHHHHHHh----CCChhH-HHHHHHH-HHHHH--HcCCccccchhHHHHHHHHHHHH-HHHhc--
Confidence 33332 33456666666665433 221111 4333211 11111 11111 112245555556632 22222
Q ss_pred ccCChhhHH-HHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 001619 479 KVFSLEDVE-DISSLYLQFLD--LCGTIHDIRNAWNQHIK 515 (1043)
Q Consensus 479 ~~l~~~~~~-~l~~lwl~fee--~~G~~~~a~~~~~ra~k 515 (1043)
..++.+... ..-.+|=.... ..|+...|...|.-+++
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 234444432 23455665554 35888999888887664
No 360
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=33.84 E-value=8.9e+02 Score=28.92 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=40.6
Q ss_pred hcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC---h---------hhHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 001619 354 LKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD---S---------RFIEKVTFKA--NMERRLGNFVAACDTYKEA 419 (1043)
Q Consensus 354 ~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~---~---------~~~~lw~~~a--~lE~~~G~~e~Ar~lyeka 419 (1043)
.+.++.+.+.-+-...+.+.+++|...|........ + ....+|...+ .-....|.+.++|.++.+.
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 445666666666666777777777777766543210 0 1112344332 2233557788888888777
Q ss_pred HHHHH
Q 001619 420 LETAA 424 (1043)
Q Consensus 420 le~~~ 424 (1043)
+..+.
T Consensus 155 ~~~ll 159 (549)
T PF07079_consen 155 IERLL 159 (549)
T ss_pred HHHHh
Confidence 77654
No 361
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.55 E-value=8.5e+02 Score=28.61 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 001619 404 RRLGNFVAACDTYKEALETAA 424 (1043)
Q Consensus 404 ~~~G~~e~Ar~lyekale~~~ 424 (1043)
.-+|+++.|.+.|++.+.+.+
T Consensus 246 iflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHH
Confidence 345888888888888877654
No 362
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.53 E-value=6.5e+02 Score=27.24 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHhh
Q 001619 408 NFVAACDTYKEALETAAEQ--RKFHTLPLLYVQFSRLTYTELIKFTMVHGG-RSHISIVDAVISNALY 472 (1043)
Q Consensus 408 ~~e~Ar~lyekale~~~~~--~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~-~~~leraR~l~erAl~ 472 (1043)
-.+.|...|++|++..... +..|....|.++|+-|.|... |+ .+.++.|+..|+.|+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~-------~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEIL-------NDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTS-------S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHc-------CChHHHHHHHHHHHHHHHh
Confidence 4589999999999987652 222323456666666655322 22 1234556666666664
No 363
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=6.7e+02 Score=32.26 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHH
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE 403 (1043)
.+|.-|.+- |++++|..+-...... ...|.+..|+|....+.|.+|-.+|....+. +.++-++++.+
T Consensus 363 ~vWk~yLd~----g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~----FEEVaLKFl~~- 429 (911)
T KOG2034|consen 363 DVWKTYLDK----GEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAETLSS----FEEVALKFLEI- 429 (911)
T ss_pred HHHHHHHhc----chHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh----HHHHHHHHHhc-
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH----------------------HHHHHHHHHhCCCchHH
Q 001619 404 RRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTY----------------------TELIKFTMVHGGRSHIS 461 (1043)
Q Consensus 404 ~~~G~~e~Ar~lyekale~~~~~~~~p~~~~l~~~~ar~~~----------------------~~~~~fe~~~g~~~~le 461 (1043)
...+.-+.++.|-|+......... ..+.++|....| ....++....-.....+
T Consensus 430 ---~~~~~L~~~L~KKL~~lt~~dk~q--~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~ 504 (911)
T KOG2034|consen 430 ---NQERALRTFLDKKLDRLTPEDKTQ--RDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDE 504 (911)
T ss_pred ---CCHHHHHHHHHHHHhhCChHHHHH--HHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHh
Q ss_pred HHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 462 IVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQ 512 (1043)
Q Consensus 462 raR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~r 512 (1043)
.-|...-+.+..--+-...+-.......+..-+.+.-..|+.+.|++++.+
T Consensus 505 ~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 505 LNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred hhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.94 E-value=9.2e+02 Score=28.83 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=47.6
Q ss_pred cCChHHHHHHHH-HHhc-cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHH
Q 001619 302 QGDFDWVVKLYE-RCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARA 379 (1043)
Q Consensus 302 ~g~~e~~~~lye-rAl~-~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ 379 (1043)
.++++.|....+ .-+. .-| ...-...+.|+++.|-.+.|..+-. .++.- -++-.+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHHHHH
Confidence 577777666655 2222 222 5667888999999997776654321 12111 122245566666555
Q ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 380 AFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 380 ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
+.+.. +....|...++.-.+.|+++-|.+.|.++-+
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 53211 1233566666666666666666666655544
No 365
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=7.6e+02 Score=27.64 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHc---CCHHHHHHH---HHHHHHhcC--CCHHHHHHHHHHHHhhCCChHH----HHHHHHHHHH
Q 001619 69 FPLCYGYWRKYADHKARL---CSIDKVVEV---FERAVQSAT--YSVDVWFHYCSLSMSTFEDPND----VRRLFKRALS 136 (1043)
Q Consensus 69 ~P~s~~lW~~y~~~e~~~---~~~e~a~~l---feRAL~~~P--~s~~LWl~Y~~~~~~~~~~~e~----ar~lferAL~ 136 (1043)
+|.+...|+++=.-..+. .+-++..++ .+.+-+.+. .-.++|...+.|.... ++.+. .+++|++|+.
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi-~D~~ng~~~~~~~~~~a~s 147 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQI-MDIQNGFEWMRRLMRDAMS 147 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHh
Confidence 777777777654432221 122233322 333333331 2346788888777665 55544 4555555543
No 366
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.17 E-value=1.6e+02 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHHHH
Q 001619 122 EDPNDVRRLFKRALS 136 (1043)
Q Consensus 122 ~~~e~ar~lferAL~ 136 (1043)
++++.|..+|..||.
T Consensus 20 g~y~eA~~lY~~ale 34 (75)
T cd02684 20 GDAAAALSLYCSALQ 34 (75)
T ss_pred ccHHHHHHHHHHHHH
Confidence 566667777766664
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=31.23 E-value=4.7e+02 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=14.4
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFW 326 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LW 326 (1043)
.|+.-+|..+.|..+...++....|
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchH
Confidence 4555556666666665555555555
No 368
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=30.59 E-value=4.3e+02 Score=25.15 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=17.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYW 76 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW 76 (1043)
|+--++-+|.|..+..+..+...|
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchH
Confidence 566666677777777777777766
No 369
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.28 E-value=2.2e+03 Score=32.54 Aligned_cols=126 Identities=9% Similarity=0.064 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHhcccchHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESK-----GGRE---IASYALDRATQIFLKRLPVIHL 362 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~-----g~~e---~Ar~ilerA~~~~~~~~p~iwl 362 (1043)
.+...+.|..+.|..++|-..|.-|+..+-.....|.+++.|.... +++. .|...|-+|+..++.....=++
T Consensus 2814 ff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~i 2893 (3550)
T KOG0889|consen 2814 FFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLI 2893 (3550)
T ss_pred HHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHH
Confidence 4444566777788889999999999988777788899998887643 2233 3334444555443222221122
Q ss_pred HHH----HHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHH
Q 001619 363 FNA----RYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANME---RRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 363 ~~A----~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE---~~~G~~e~Ar~lyekale~ 422 (1043)
+.+ .+....|.+. +.+++-+.+. | +-.|+-|+-.. .+.+..+-++.++.+.-+.
T Consensus 2894 akvLwLls~dda~~~l~---~~~~k~l~~i-p--~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~ 2954 (3550)
T KOG0889|consen 2894 AKVLWLLSFDDSLGTLG---DVFDKFLGEI-P--VWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKS 2954 (3550)
T ss_pred HHHHHHHHhccccchHH---HHHHHhhccC-C--chhhhhhhHHHHhhccccchhHHHHHHHHHHHh
Confidence 222 2223334222 2333333332 2 22455554322 2335667777777776665
No 370
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=30.03 E-value=1.2e+02 Score=22.01 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001619 396 VTFKANMERRLGNFVAACDTYKEALETAA 424 (1043)
Q Consensus 396 w~~~a~lE~~~G~~e~Ar~lyekale~~~ 424 (1043)
+...+.+....|++++|+.+++++++...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 44455666677999999999999988643
No 371
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=29.48 E-value=2.7e+02 Score=27.51 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001619 296 LSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQI 352 (1043)
Q Consensus 296 i~~e~~~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~ 352 (1043)
++.+...|..+.+..++....+...-.++|-+..|.-|.+.|+..+|..++.+|++.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334445677777777777776655556778888888888888888888888777753
No 372
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=29.12 E-value=1.2e+02 Score=35.83 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=28.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHH---------hh-------cCCCccccCChhhHHHHHHHHHHHHHH
Q 001619 448 IKFTMVHGGRSHISIVDAVISNA---------LY-------SRPDVLKVFSLEDVEDISSLYLQFLDL 499 (1043)
Q Consensus 448 ~~fe~~~g~~~~leraR~l~erA---------l~-------~~p~~~~~l~~~~~~~l~~lwl~fee~ 499 (1043)
+++-+.+|.. -.|||++|--. ++ .||.....|..-..++|-.+|..||++
T Consensus 312 lelrKn~G~E--e~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEke 377 (796)
T KOG1112|consen 312 LELRKNTGKE--EFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKE 377 (796)
T ss_pred HHHHhccChH--HHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHh
Confidence 3333445543 34888887421 11 256555556555666777777777754
No 373
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.84 E-value=9.1e+02 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 60 LVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 60 ~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
+.-..+|+.+|.+...+.-+++.|. ..+.+|.++|.+||+.
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH
Confidence 3445678888888777776665543 3567788888888876
No 374
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.20 E-value=2e+02 Score=25.22 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=7.1
Q ss_pred hCCHHHHHHHHHhhh
Q 001619 371 IGDTSAARAAFPESY 385 (1043)
Q Consensus 371 ~g~~d~Ar~ll~ral 385 (1043)
.|++++|..+|..|+
T Consensus 19 ~g~y~eA~~lY~~al 33 (75)
T cd02684 19 RGDAAAALSLYCSAL 33 (75)
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444443
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.84 E-value=1e+03 Score=27.79 Aligned_cols=126 Identities=15% Similarity=0.051 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhccCC-----CcHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHhcccchHHHH
Q 001619 291 NWHDYLSFAEKQGDFDWVVKLYERCLIPCA-----DYPEFWMRYVD--FMESKGGREIASYALDRATQIFLKRLPVIHLF 363 (1043)
Q Consensus 291 ~W~~yi~~e~~~g~~e~~~~lyerAl~~~~-----~~~~LWl~yAk--~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~ 363 (1043)
.|.....++ +.+++..|..+|+.++.... ....+|...++ .+|..-++++|...|++. ..+..|..
T Consensus 133 e~~~~r~l~-n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~------~~~~~~~~ 205 (380)
T TIGR02710 133 EQGYARRAI-NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP------LPERLALY 205 (380)
T ss_pred HHHHHHHHH-HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc------cchhhhhh
Confidence 444444444 46889999999999997532 23455555555 446777899999988751 12345555
Q ss_pred HHHHHHHhCCHHHHHHHHHhh---------hhCCChhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 001619 364 NARYKEQIGDTSAARAAFPES---------YIDSDSRFIEKVTFKANMER--RLGNFVAACDTYKEALETA 423 (1043)
Q Consensus 364 ~A~~E~~~g~~d~Ar~ll~ra---------l~~~~~~~~~lw~~~a~lE~--~~G~~e~Ar~lyekale~~ 423 (1043)
|+.+......+.+....+... .....+...-+..-+.+-++ ..|.++.|...+-+++++.
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~ 276 (380)
T TIGR02710 206 QVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELI 276 (380)
T ss_pred hhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555554422222222211111 11112222223334445555 4588999988888888863
No 376
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.84 E-value=7e+02 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHh
Q 001619 326 WMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPE 383 (1043)
Q Consensus 326 Wl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~r 383 (1043)
-+.-|+++...|..+.|-.+|+|-+.. .++ ..+..||+-..+.|-..+|+.++.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 45 MLKKAEFLHDVNETERAYALYETLIAQ-NND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHh-CCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 334455555566677777777777655 222 5677777777777777777777763
No 377
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.61 E-value=1.2e+02 Score=26.73 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001619 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAA 424 (1043)
Q Consensus 374 ~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~ 424 (1043)
+++|+.++.+|+. +...|++++|+.+|..||+.+.
T Consensus 3 l~kai~Lv~~A~~----------------eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 3 LERAHFLVTQAFD----------------EDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHH----------------hhHhhhHHHHHHHHHHHHHHHH
Confidence 4556666666643 2345889999999999999754
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=3.7e+02 Score=30.61 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcc-CCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHH
Q 001619 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP-CAD---YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~-~~~---~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A 365 (1043)
..+..=.+.+.+.+++..|+..|.++|+. |++ ...|+.+.|--....|++..|.+--.+|+.. .|.....++.-|
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-Ccchhhhhhhhh
Confidence 45666677777778899999999999974 443 2466666665555557776666666666554 444444555556
Q ss_pred HHHHHhCCHHHHHHHHHhhh
Q 001619 366 RYKEQIGDTSAARAAFPESY 385 (1043)
Q Consensus 366 ~~E~~~g~~d~Ar~ll~ral 385 (1043)
+.......++.|....+..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 66666666555555544443
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.35 E-value=8.8e+02 Score=26.83 Aligned_cols=136 Identities=10% Similarity=0.152 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-ccchHHH
Q 001619 290 KNWHDYLSFAEKQGDFDWVVKLYERCLIP-----CADY-PEFWMRYVDFMESKGGREIASYALDRATQIFLK-RLPVIHL 362 (1043)
Q Consensus 290 ~~W~~yi~~e~~~g~~e~~~~lyerAl~~-----~~~~-~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~-~~p~iwl 362 (1043)
.+....+....+.+++++....|...+.. ..++ +.--.....|.....+.+--...|+-.+..... .+..+|+
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 33444455555677777777777766642 1222 222223333333344455555566655554211 2345665
Q ss_pred H----HHHHHHHhCCHHHHHHHHHhhhhCCC-----------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 001619 363 F----NARYKEQIGDTSAARAAFPESYIDSD-----------SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAE 425 (1043)
Q Consensus 363 ~----~A~~E~~~g~~d~Ar~ll~ral~~~~-----------~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~ 425 (1043)
- .+++....|++-+-.+|++..-..+. ...+++|-.-+.+.....+-++-+.+|++++-...+
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA 223 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA 223 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence 3 35555556666666666665533211 123456655566666677888999999999987544
No 380
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.15 E-value=6.4e+02 Score=29.75 Aligned_cols=115 Identities=12% Similarity=-0.044 Sum_probs=61.0
Q ss_pred HHHHHh-ccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCC
Q 001619 311 LYERCL-IPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD 389 (1043)
Q Consensus 311 lyerAl-~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~ 389 (1043)
+|-+.+ +....+..+-...++| ...+.||.+|..+...-.+ ++-....=......|-.-.+++...+....
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~----~~~ERA~~L~kE~~~~k~k----v~~~aFN~lI~~~S~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKF----SSLERARELYKEHRAAKGK----VYREAFNGLIGASSYSVGKKLVAEMISQKM 269 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHH----HhHHHHHHHHHHHHHhhhe----eeHHhhhhhhhHHHhhccHHHHHHHHHhhc
Confidence 444444 3344445556666777 3567888888876654221 111110000111112222455555544222
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCccH
Q 001619 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433 (1043)
Q Consensus 390 ~~~~~lw~~~a~lE~~~G~~e~Ar~lyekale~~~~~~~~p~~~ 433 (1043)
...+-.+-..+..-.+.|+++-||+.+-.+|...+.....|.+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLS 313 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchh
Confidence 11233344455566778999999999988888877666566543
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.06 E-value=1e+02 Score=36.42 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 001619 72 CYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMS 119 (1043)
Q Consensus 72 s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~ 119 (1043)
++.+-+...-.....|.+-.|..+|.+|+..+..+++||+..+..++-
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345555555566667888999999999999999999999999987653
No 382
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=25.80 E-value=6.6e+02 Score=24.96 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=39.1
Q ss_pred cCChHHHHHHHHHHhccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCHHHHHHHH
Q 001619 302 QGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381 (1043)
Q Consensus 302 ~g~~e~~~~lyerAl~~~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~A~~E~~~g~~d~Ar~ll 381 (1043)
.|+..+++..|-+. ....++.-.....+...|..+.-.+++....+. ....|.+.+..|.-+.+.|+..+|-+++
T Consensus 69 C~NlKrVi~C~~~~----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 69 CGNLKRVIECYAKR----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp -S-THHHHHHHHHT----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hcchHHHHHHHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 35556666555443 233344444445555566555444444433321 2345666666666667777777777777
Q ss_pred HhhhhC
Q 001619 382 PESYID 387 (1043)
Q Consensus 382 ~ral~~ 387 (1043)
.+|++.
T Consensus 144 ~~ACek 149 (161)
T PF09205_consen 144 KEACEK 149 (161)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777653
No 383
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.79 E-value=1.3e+03 Score=28.18 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhcccchHHH------HHHHHHHHhCC-HHHHHHHHHhhhh
Q 001619 332 FMESKGGREIASYALDRATQIFLKRLPVIHL------FNARYKEQIGD-TSAARAAFPESYI 386 (1043)
Q Consensus 332 ~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl------~~A~~E~~~g~-~d~Ar~ll~ral~ 386 (1043)
.+...|+.+.|...|..+++.......+.|+ +.|-+.+..|. +.+|++++.+|..
T Consensus 458 ~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 458 ILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 4455677788888887777543333323333 33444444444 7888888887764
No 384
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=25.21 E-value=1.9e+02 Score=35.61 Aligned_cols=11 Identities=9% Similarity=-0.148 Sum_probs=5.8
Q ss_pred cCCccHHHHHH
Q 001619 428 KFHTLPLLYVQ 438 (1043)
Q Consensus 428 ~~p~~~~l~~~ 438 (1043)
.-|.+|+-|+.
T Consensus 559 ~~P~WP~G~~~ 569 (1136)
T KOG4786|consen 559 EPPKWPDGQAE 569 (1136)
T ss_pred cCCCCCchHHH
Confidence 34445566654
No 385
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.09 E-value=7.4e+02 Score=25.21 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lfe 132 (1043)
++.+.+..++...-..-|....+=.--+-+.+..|++.+|+.+|+.....-|.+ -.++.++-
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~------------------p~~kALlA 85 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF------------------PYAKALLA 85 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------------------hHHHHHHH
Confidence 456666666666666667766655555555566677777777777755543321 12334444
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHhc
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLR 173 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~~iy~raL~ 173 (1043)
-+|..++ ..-|..|+.-....+....++.+.++.+.
T Consensus 86 ~CL~~~~-----D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 86 LCLYALG-----DPSWRRYADEVLESGADPDARALVRALLA 121 (160)
T ss_pred HHHHHcC-----ChHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4444443 35687777655444434455555554443
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.08 E-value=1.6e+02 Score=35.79 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=61.7
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhCCHHHHHHHHHhhhhCCChhhHHHHHHHHHHH
Q 001619 327 MRYVDFMES-KGGREIASYALDRATQIFLK--RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANME 403 (1043)
Q Consensus 327 l~yAk~~e~-~g~~e~Ar~ilerA~~~~~~--~~p~iwl~~A~~E~~~g~~d~Ar~ll~ral~~~~~~~~~lw~~~a~lE 403 (1043)
++.|-+||+ .|+..-|.+.+.+|+....- ..+ ....|.+....|-...|..++..++...... .-.++...++.
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~--~v~la~~~~~~~~~~da~~~l~q~l~~~~se-pl~~~~~g~~~ 686 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP--LVNLANLLIHYGLHLDATKLLLQALAINSSE-PLTFLSLGNAY 686 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhccc--HHHHHHHHHHhhhhccHHHHHHHHHhhcccC-chHHHhcchhH
Confidence 345667776 58889999999999864111 122 3345667777787788888888887532211 22233334444
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 001619 404 RRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 404 ~~~G~~e~Ar~lyekale~ 422 (1043)
.-+.+++.|.+.|+.|+++
T Consensus 687 l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHhhhHHHHHHHHHHHhc
Confidence 4567899999999999997
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.73 E-value=2.1e+02 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001619 55 IEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 55 ~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P 104 (1043)
........++.++..| ...+..+|+......|+.++|+.+++++...+|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566677777777 466777777777777777777777777777777
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.48 E-value=8.2e+02 Score=27.05 Aligned_cols=94 Identities=10% Similarity=0.149 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhCC
Q 001619 53 DDIEMIGLVYDSFLAEFPLC----YGYWRKYADHKARLCSIDKVVEVFERAVQSA------TYSVDVWFHYCSLSMSTFE 122 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s----~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~------P~s~~LWl~Y~~~~~~~~~ 122 (1043)
...+++..-|++.|+.-+.. ++..+..++...+.+++++..+.|...|..+ .+|..---..++|.... .
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS-~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS-K 119 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh-h
Confidence 56777888899999887654 4555667777777888888777776655432 22222222222332222 4
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcHHHH
Q 001619 123 DPNDVRRLFKRALSFVGKDYLCHTMW 148 (1043)
Q Consensus 123 ~~e~ar~lferAL~~lp~~~~s~~IW 148 (1043)
+.+-....|+..|+++-..- ..++|
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-NeRLW 144 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-NERLW 144 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-cceee
Confidence 45556666666666553221 34566
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=23.94 E-value=4.6e+02 Score=23.42 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 001619 88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF 137 (1043)
Q Consensus 88 ~~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL~~ 137 (1043)
+.++|..++++||...+.+.+-|..+.-+..-+ .+.-+-|..++-|+.-
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~-~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAH-MEWGKYREMLAFALQQ 69 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 456777788888887777777776655443322 3333445555555543
No 390
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=23.85 E-value=1.1e+03 Score=26.81 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhccc-c-hHHHHHHHHH--HHhCCHHHHHHHHHhhhh
Q 001619 319 CADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRL-P-VIHLFNARYK--EQIGDTSAARAAFPESYI 386 (1043)
Q Consensus 319 ~~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~-p-~iwl~~A~~E--~~~g~~d~Ar~ll~ral~ 386 (1043)
.+...+.-.+||+|....|++..|...+=-...+ ++.. + .+-..|+++- .-.-++|.|++-+.|..+
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l-~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRAL-VSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3555667779999999999998887655333222 3221 1 2444566664 446789999988887754
No 391
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=23.07 E-value=1.1e+03 Score=27.33 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001619 58 IGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQS 102 (1043)
Q Consensus 58 ~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~ 102 (1043)
...++..+++.||+-.++|..+.++..+..-.++.++..+.|++.
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~ 152 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKH 152 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHH
Confidence 347788999999999999999999776543334455555555543
No 392
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=22.58 E-value=1.3e+03 Score=27.17 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYS 106 (1043)
Q Consensus 53 ~~~~~~r~vyeraL~~~P~s~~lW~~y~~~e~~~~~~e~a~~lfeRAL~~~P~s 106 (1043)
++..+-...|+.||..--...+..- ..+..+|+.---..=|++||+...+.
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLS---AIYsQLGNAyfyL~DY~kAl~yH~hD 81 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLS---AIYSQLGNAYFYLKDYEKALKYHTHD 81 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHH---HHHHHhcchhhhHhhHHHHHhhhhhh
Confidence 4555555566666654433332221 11223333333334455555554333
No 393
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.55 E-value=1.7e+02 Score=24.79 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=8.9
Q ss_pred HhCCHHHHHHHHHhhh
Q 001619 370 QIGDTSAARAAFPESY 385 (1043)
Q Consensus 370 ~~g~~d~Ar~ll~ral 385 (1043)
+.|+++.|...|..|+
T Consensus 17 ~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 17 EAGNYEEALELYKEAI 32 (69)
T ss_dssp HTTSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 4555555555555554
No 394
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=22.52 E-value=7.8e+02 Score=24.88 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=49.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 001619 64 SFLAEFPLCYGYWRKYADHKARLCS--------IDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRAL 135 (1043)
Q Consensus 64 raL~~~P~s~~lW~~y~~~e~~~~~--------~e~a~~lfeRAL~~~P~s~~LWl~Y~~~~~~~~~~~e~ar~lferAL 135 (1043)
+.|..--.-.++|...+.+....-. ++-..-+.-|.++..|.-++=.-.++..+.+. -.-+++|.+|+.+|
T Consensus 30 ktlAsQaaQdE~Wtavl~l~FtsmElnilYSYvievL~cLht~VlEkLPdL~r~LPTlASvLrrK-vkN~~Ir~vwesvL 108 (196)
T PF15080_consen 30 KTLASQAAQDEMWTAVLALKFTSMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRK-VKNKRIRVVWESVL 108 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhCcchHHHHHHHH-hhchHHHHHHHHHH
Confidence 3343334445677776665421100 11112223355555554444333445555444 34567899999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHhhh
Q 001619 136 SFVGKDYLCHTMWDKYIEFEISQQR 160 (1043)
Q Consensus 136 ~~lp~~~~s~~IW~~yi~fe~~~~~ 160 (1043)
..+|..-. . -.+.+-|...+|+
T Consensus 109 ee~GLqE~--d-v~aLCtFfiahgn 130 (196)
T PF15080_consen 109 EECGLQEG--D-VTALCTFFIAHGN 130 (196)
T ss_pred HHcCCCcc--c-HHHHHHHHHHhcc
Confidence 99987432 2 2456677776654
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1.5e+03 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001619 30 IAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFL 66 (1043)
Q Consensus 30 i~~nP~d~~~W~~~i~~le~~~~~~~~~~r~vyeraL 66 (1043)
+..+||.++..+...+.+... ++.+.++.+.+|+|
T Consensus 277 L~ssPYHvdsLLqva~~~r~q--gD~e~aadLieR~L 311 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQ--GDREMAADLIERGL 311 (665)
T ss_pred eccCCcchhHHHHHHHHHHHh--cchhhHHHHHHHHH
Confidence 446799999999988877765 77777666666666
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.08 E-value=6.2e+02 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhccC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 001619 306 DWVVKLYERCLIPC------ADYPEFWMRYVDFMESKGGREIASYALDRATQIF 353 (1043)
Q Consensus 306 e~~~~lyerAl~~~------~~~~~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~ 353 (1043)
..++.++++|+..+ .....|=...|.++...|++++|...|+++...|
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y 208 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSY 208 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35666777776532 1223445566666667777777777777775553
No 397
>PF12854 PPR_1: PPR repeat
Probab=21.62 E-value=1.9e+02 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 001619 326 WMRYVDFMESKGGREIASYALD 347 (1043)
Q Consensus 326 Wl~yAk~~e~~g~~e~Ar~ile 347 (1043)
|-..+.-+-+.|++++|+.+|+
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444455555555544
No 398
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.05 E-value=1.3e+02 Score=20.17 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001619 396 VTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 396 w~~~a~lE~~~G~~e~Ar~lyekale 421 (1043)
|...++.-.+.|.+++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44445555666777888877777665
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.04 E-value=5.3e+02 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=45.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001619 455 GGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 455 g~~~~leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
++...++..+...++.+...|+- .++..|+......|+.+.|+..+.++...+|.
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~----------~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDP----------NVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34445667778888888877874 56778888889999999999999999999994
No 400
>PF12854 PPR_1: PPR repeat
Probab=20.94 E-value=1.8e+02 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001619 73 YGYWRKYADHKARLCSIDKVVEVFER 98 (1043)
Q Consensus 73 ~~lW~~y~~~e~~~~~~e~a~~lfeR 98 (1043)
.-.|..+|.-.-+.|++++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555655666666666666654
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=1.3e+03 Score=26.45 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcccc--hH---HHHHHHHHHHhCCHHHHHHHHHhhhhC-----CChh--
Q 001619 324 EFWMRYVDFMESKGGREIASYALDRATQIFLKRLP--VI---HLFNARYKEQIGDTSAARAAFPESYID-----SDSR-- 391 (1043)
Q Consensus 324 ~LWl~yAk~~e~~g~~e~Ar~ilerA~~~~~~~~p--~i---wl~~A~~E~~~g~~d~Ar~ll~ral~~-----~~~~-- 391 (1043)
.+-..+..+.++.+|.++|...+++....+..... .+ ..+-+++....|+...+|+++..+-+. ..+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 34444455566677889999999988876443222 23 335577777899999999999877541 1121
Q ss_pred hHHHHHHHHHHHHHcCCHHHHH
Q 001619 392 FIEKVTFKANMERRLGNFVAAC 413 (1043)
Q Consensus 392 ~~~lw~~~a~lE~~~G~~e~Ar 413 (1043)
+..+|.-...+.++.|++....
T Consensus 156 h~~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHH
Confidence 2234444455566667766543
No 402
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.14 E-value=1.5e+02 Score=26.09 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcCCCccccCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001619 460 ISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 460 leraR~l~erAl~~~p~~~~~l~~~~~~~l~~lwl~fee~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
++++..++.+|+.. ...|+.+.|..+|..+++.|-.
T Consensus 3 l~kai~Lv~~A~~e------------------------D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDE------------------------DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHh------------------------hHhhhHHHHHHHHHHHHHHHHH
Confidence 45777888887762 3458888999999999998876
Done!