Query 001619
Match_columns 1043
No_of_seqs 520 out of 3238
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:21:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001619.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_915-919//hhsearch_pdb/001619hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 467.6 53.0 440 18-522 47-576 (679)
2 2ooe_A Cleavage stimulation fa 1.0 1 1 375.0 51.2 454 25-556 1-522 (530)
3 2uy1_A Cleavage stimulation fa 1.0 1 1 335.4 40.9 356 53-519 8-416 (493)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 318.4 40.0 381 58-518 51-535 (679)
5 2uy1_A Cleavage stimulation fa 1.0 1 1 284.1 24.0 357 53-511 28-447 (493)
6 2ooe_A Cleavage stimulation fa 1.0 1 1 264.6 35.7 420 61-520 1-458 (530)
7 2ond_A Cleavage stimulation fa 1.0 1 1 203.6 28.2 239 70-422 5-270 (308)
8 2ond_A Cleavage stimulation fa 1.0 1 1 192.5 26.5 212 286-521 47-275 (308)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 188.0 44.9 359 53-519 13-371 (388)
10 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 183.2 38.9 355 22-477 18-372 (388)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=467.56 Aligned_cols=440 Identities=14% Similarity=0.184 Sum_probs=354.3
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---HHHHHH
Q ss_conf 99841787999999398899999999999981199918999999999999699998999999999998099---989999
Q 001619 18 PVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS---IDKVVE 94 (1043)
Q Consensus 18 ~~~~~~~~le~~i~~nP~d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~---~e~a~~ 94 (1043)
.-.+.+..||+.|..||+|++.|++|++++++. +++..+|.+|+++|..||.++++|++|+++|.+.++ ++.++.
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 977899999999997868899999999999861--829999999999999889987999999999986378505999999
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHH-------
Q ss_conf 9999998338--9999999999999720899-------68999999999996198-77738999999999998-------
Q 001619 95 VFERAVQSAT--YSVDVWFHYCSLSMSTFED-------PNDVRRLFKRALSFVGK-DYLCHTMWDKYIEFEIS------- 157 (1043)
Q Consensus 95 lfeRAL~~~p--~s~~LW~~Y~~~~~~~~~~-------~e~ar~vferAL~~lp~-~~~s~~IW~~yi~fe~~------- 157 (1043)
+|+|||..+| .+++||+.|++|+.+..+. .+.+|.+|++|+..+|. ++.++.||..|++|+..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999875477898999999999999855434565013899999999999981966556539999999999863545767
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf --145565999999986178701899999999999877876532002457799986321666667661022477874218
Q 001619 158 --QQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLD 235 (1043)
Q Consensus 158 --~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~ 235 (1043)
.+.++.+++||.|+|.+|+.++..+|..|..|+..++..+. .+.+ .
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a------~~~~----------------------~---- 252 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTA------RRHI----------------------G---- 252 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTH------HHHH----------------------H----
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH------HHHH----------------------H----
T ss_conf 7876899999999999828637799999999999973583118------8999----------------------8----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------------CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 75135777999999887798989889999999999997103477789------------999577999999999999829
Q 001619 236 PSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVK------------PLDDIQLKNWHDYLSFAEKQG 303 (1043)
Q Consensus 236 ~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~------------~~~p~~~~~W~~yi~~e~~~g 303 (1043)
.....|..+...+..+..++..|.+.+.... ......+.+|.+|++||+.++
T Consensus 253 ----------------e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~ 316 (679)
T 4e6h_A 253 ----------------ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316 (679)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCT
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----------------7337778899999999999986751166543200002589986648999999999999998487
Q ss_pred -------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
Q ss_conf -------9679999999986049992899999999999809968999-99999999873026068999999999808999
Q 001619 304 -------DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIAS-YALDRATQIFLKRLPVIHLFNARYKEQIGDTS 375 (1043)
Q Consensus 304 -------~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar-~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e 375 (1043)
..++++.+|++||..||.++++|++||+|++..|+.++|+ .+|+||+.. +|.+..+|+.||++|++.|+++
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHH
T ss_conf 666410168999999999998769977999999999986286789999999999986-8987799999999999848899
Q ss_pred HHHHHHHHHHHCC----------CH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9999999664178----------81-----------25999999999999809999999999999999874104886179
Q 001619 376 AARAAFPESYIDS----------DS-----------RFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPL 434 (1043)
Q Consensus 376 ~Ar~il~ral~~~----------~~-----------~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~ 434 (1043)
+||.+|++++... .| +...+|+.|++||++.|+++.||++|++|++.. .+..+.
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~ 470 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCCHH
T ss_conf 999999999988787766664116741245554113369999999999987088899999999999736-----898869
Q ss_pred HHHHHHHHHH---------------------------HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9999999999---------------------------9999999980897649999999999860399743248956599
Q 001619 435 LYVQFSRLTY---------------------------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVE 487 (1043)
Q Consensus 435 l~~~~ar~~~---------------------------~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~ 487 (1043)
+|+.+|.+++ ..|++|+...|+ ++++|++|++|+..+|+. +.+.
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~~------~~~~ 541 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISDS------HLLK 541 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSST------THHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCH------HHHH
T ss_conf 9999999999968988999999999998789953999999999980897---789999999998716887------8999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999809999999999999962898754
Q 001619 488 DISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR 522 (1043)
Q Consensus 488 ~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~p~~~~ 522 (1043)
.+|..|++||+.+|+.+.+.++++|++++||.+..
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999869999999999999986899738
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=374.97 Aligned_cols=454 Identities=18% Similarity=0.270 Sum_probs=302.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 79999993988999999999999811999189999999999996999989999999999980999899999999998338
Q 001619 25 GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSAT 104 (1043)
Q Consensus 25 ~le~~i~~nP~d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p 104 (1043)
.|+++|..+|.++++|..++++ ... ++++.++.+|+++++.+|.++.+|+.|+.++.+.+++++|+.+|+|||..+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHCCCCHHHHHHHHHH-HHH--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9366865397779999999999-984--8799999999999987899799999999999866988999999999872289
Q ss_pred CCHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q ss_conf 9999999999999720899689----9999999999619877738999999999998---------14556599999998
Q 001619 105 YSVDVWFHYCSLSMSTFEDPND----VRRLFKRALSFVGKDYLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQT 171 (1043)
Q Consensus 105 ~s~~LW~~Y~~~~~~~~~~~e~----ar~vferAL~~lp~~~~s~~IW~~yi~fe~~---------~~~~e~a~kiy~Ra 171 (1043)
++++|+.|++++....++++. ++.+|++|+..+|.++.+..+|..|+.|+.. .++++.++++|+|+
T Consensus 78 -~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 78 -HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -8489999999999974650468999999999999977888660799999999996077765378773799999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 61787018999999999998778765320024577999863216666676610224778742187513577799999988
Q 001619 172 LRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRF 251 (1043)
Q Consensus 172 L~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~ 251 (1043)
|.+|.......|..|..|...++..+.. .++. +..+.+..|+.++..+.
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~-----------~~l~--------------------~~~~~~~~A~~~~~~~~ 205 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAK-----------KMIE--------------------DRSRDYMNARRVAKEYE 205 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHH-----------HHHH--------------------TTHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHHHHCHHHHH-----------HHHH--------------------HHHHHHHHHHHHHHHHH
T ss_conf 9666635999999999999721666799-----------9999--------------------85288887999999999
Q ss_pred ----------------------------HHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----------------------------7798989889---------999999999997103477789999577999999
Q 001619 252 ----------------------------IGEQIYKEAS---------QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHD 294 (1043)
Q Consensus 252 ----------------------------~~~~~y~~a~---------~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~ 294 (1043)
..-..|++.. .....+..|++++. .+|.+..+|..
T Consensus 206 ~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~ 277 (530)
T 2ooe_A 206 TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYE 277 (530)
T ss_dssp HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--------HCCCCHHHHHH
T ss_conf 9999742034558999986579999999999999870975577512688999999999998--------57897799999
Q ss_pred HHHHHHH-------CCCHH-------HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 9999998-------29967-------99999999860-49992899999999999809968999999999998730260-
Q 001619 295 YLSFAEK-------QGDFD-------WVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP- 358 (1043)
Q Consensus 295 yi~~e~~-------~g~~e-------~v~~lyerAi~-~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p- 358 (1043)
|+.++.. .|+.+ .++.+|++|+. .+|+...+|+.|+.+++..|+++.|+.+|++++.. .|..+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 356 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-SSSCHH
T ss_pred HHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCH
T ss_conf 9999998354655326512212114999999999999868665799999999998638899999999998576-456830
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 6899999999980899999999996641788125999999999999-809999999999999999874104886179999
Q 001619 359 VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMER-RLGNFVAACDTYKEALETAAEQRKFHTLPLLYV 437 (1043)
Q Consensus 359 ~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~-~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~~ 437 (1043)
.+|+.++.++.+.|+++.|+.+|.+|+.. .+....+|+..+.++. ..|+.+.|+.+|+++++. +|..+.+|
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~- 428 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYV- 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHH-
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHH-
T ss_conf 99999999999806889999999999735-57750899999999998807835999999999987------89978999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999999999980897649999999999860399743248956599999999999998099999999999999628
Q 001619 438 QFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLF 517 (1043)
Q Consensus 438 ~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~ 517 (1043)
..++.|+...|. .+++|.+|++|+..+|.+ ++....+|..|+.||..+|+.+.+.+++.|+++.|
T Consensus 429 -------~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 429 -------LAYIDYLSHLNE---DNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp -------HHHHHHHTTTTC---HHHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHCCC---HHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf -------999999986798---866999999998415798-----78899999999999998299999999999999877
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCC
Q ss_conf 9875433457530022378864311003220389-41100
Q 001619 518 PHTVRTAYECPGRETKSLRAFIRGKRESNVASLP-QPFES 556 (1043)
Q Consensus 518 p~~~~~~~~~~~~k~~s~~~~~~~~~~~~i~~~~-~~~~~ 556 (1043)
|.... .+.... -.+|.++...+| .+..-
T Consensus 494 p~~~~---------~~~~~~--~~~r~~~~~~~~~~~~~~ 522 (530)
T 2ooe_A 494 REEYE---------GKETAL--LVDRYKFMDLYPCSASEL 522 (530)
T ss_dssp HHHHT---------TCHHHH--HGGGTCBTTBCSSCHHHH
T ss_pred CHHCC---------CCHHHH--HHHHHHHCCCCCCCHHHH
T ss_conf 31115---------854899--999987426678999999
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=335.37 Aligned_cols=356 Identities=13% Similarity=0.150 Sum_probs=277.7
Q ss_pred C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9-189999999999996999989999999999980999899999999998338999999999999972089968999999
Q 001619 53 D-DIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLF 131 (1043)
Q Consensus 53 ~-~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vf 131 (1043)
| ++..+|.||++++..+|. +++++++.||+|||..+| |++||+.|++|+.+.....+.++.+|
T Consensus 8 ~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ----CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 76468899999999987799---------------999999999999856699-97999999999998475699999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999961987773899999999999----814556599999998617870189999999999987787653200245779
Q 001619 132 KRALSFVGKDYLCHTMWDKYIEFEI----SQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207 (1043)
Q Consensus 132 erAL~~lp~~~~s~~IW~~yi~fe~----~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~ 207 (1043)
++|+..+|.++.++.||..|++|+. ..+.++.+++||+|+|.+|..++..+|..|..|...++.... .+.
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~------~~~ 145 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG------KKI 145 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH------HHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCH------HHH
T ss_conf 99998768886618999999999973606567999999999999827354699999999999987461017------889
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99863216666676610224778742187513577799999988779898988999999999999710347778999957
Q 001619 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287 (1043)
Q Consensus 208 ~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~ 287 (1043)
+ .. ..+.+.++|.++.. ... .+.+ .
T Consensus 146 ~----------------------~~---~~~~y~~ar~~y~~-----------------~~~---~~~~----------~ 170 (493)
T 2uy1_A 146 V----------------------GD---TLPIFQSSFQRYQQ-----------------IQP---LIRG----------W 170 (493)
T ss_dssp H----------------------HH---HHHHHHHHHHHHHH-----------------HHH---HHHT----------C
T ss_pred H----------------------HH---HHHHHHHHHHHHHH-----------------HHH---HHHH----------C
T ss_conf 9----------------------99---81788999999999-----------------998---8743----------4
Q ss_pred HHHHHHHHHHHHHHCC--C-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 7999999999999829--9-----679999999986049992899999999999809968999999999998730260--
Q 001619 288 QLKNWHDYLSFAEKQG--D-----FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLP-- 358 (1043)
Q Consensus 288 ~~~~W~~yi~~e~~~g--~-----~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p-- 358 (1043)
+..+|.+|++|++.++ . .+++..+|++|+..+|..+.+|++|++|++..|+++.||.+|+||+.. |.+.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHHH
T ss_conf 299999999998629865762125999999999998728998999999999998759989999999998718--996999
Q ss_pred --------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf --------------------------------------689999999998089999999999664178812599999999
Q 001619 359 --------------------------------------VIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKA 400 (1043)
Q Consensus 359 --------------------------------------~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a 400 (1043)
.+|+.|++|+.+.+++++||.+|.+| ..+. ....+|+.+|
T Consensus 249 ~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~-~~~~v~i~~A 326 (493)
T 2uy1_A 249 SLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG-VGPHVFIYCA 326 (493)
T ss_dssp HHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC-CCHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HCCC-CCHHHHHHHH
T ss_conf 9998765105689999999998611101223204561899999999998717889999999986-2778-8859999999
Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999809-999999999999999874104886179999999999999999999808976499999999998603997432
Q 001619 401 NMERRLG-NFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLK 479 (1043)
Q Consensus 401 ~lE~~~G-~~e~Ar~iyekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~ 479 (1043)
.+|...| +.+.||.+|+++++. +|..+.+|+ .|++||...|+ .+++|++|+++..
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~------~~~~~~~~~--------~yid~e~~~~~---~~~aR~l~er~~k------- 382 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLK------HPDSTLLKE--------EFFLFLLRIGD---EENARALFKRLEK------- 382 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHH------CTTCHHHHH--------HHHHHHHHHTC---HHHHHHHHHHSCC-------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHH--------HHHHHHHHCCC---HHHHHHHHHHHHH-------
T ss_conf 99998789968999999999987------899789999--------99999987598---7779999999998-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4895659999999999999809999999999999962898
Q 001619 480 VFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 480 ~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
...+|..|++||+.+|+.+.+++++.|+.+.+..
T Consensus 383 ------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 383 ------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp ------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf ------9999999999999779999999999999998455
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=318.43 Aligned_cols=381 Identities=13% Similarity=0.174 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Q ss_conf 999999999969999899999999999809998999999999983389999999999999720899---68999999999
Q 001619 58 IGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFED---PNDVRRLFKRA 134 (1043)
Q Consensus 58 ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~---~e~ar~vferA 134 (1043)
....||+.|..+|.+++.|..|++++.+.+.++.+|.+|+|||..+|.+..+|+.|+.++... ++ ++.++.+|+||
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 999999999978688999999999998618299999999999998899879999999999863-7850599999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHC-CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99619877738999999999998145--------5659999999861-787--018999999999998778765320024
Q 001619 135 LSFVGKDYLCHTMWDKYIEFEISQQR--------WSSLAQIFVQTLR-FPS--KKLHHYYDSFKKLAGAWKEELECESDS 203 (1043)
Q Consensus 135 L~~lp~~~~s~~IW~~yi~fe~~~~~--------~e~a~kiy~RaL~-~p~--~~l~~~~~~y~~~~~~~~e~l~~~~~~ 203 (1043)
+..++... +..||..|++|....+. .+.++++|+++|. +.. ......|..|.+|+..+..
T Consensus 130 l~~~~~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~-------- 200 (679)
T 4e6h_A 130 LSKELGNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP-------- 200 (679)
T ss_dssp TCSSSCCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC--------
T ss_pred HHHCCCCC-CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--------
T ss_conf 87547789-899999999999985543456501389999999999998196655653999999999986354--------
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 57799986321666667661022477874218751357779999998877989898899999999999971034777899
Q 001619 204 AMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKP 283 (1043)
Q Consensus 204 ~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~ 283 (1043)
... | +...+....+..|++++..|
T Consensus 201 -----------------~~~---------~------------------------eeq~~~~~~R~iy~raL~iP------ 224 (679)
T 4e6h_A 201 -----------------VNK---------F------------------------EEQQRVQYIRKLYKTLLCQP------ 224 (679)
T ss_dssp -----------------CSH---------H------------------------HHHHHHHHHHHHHHHHTTSC------
T ss_pred -----------------CCC---------H------------------------HHHHHHHHHHHHHHHHHHCC------
T ss_conf -----------------576---------7------------------------78768999999999998286------
Q ss_pred CCHHHHHHHHHHHHHHHHCC-------------CHHHHHHHHHH------HHCC-C------------C-------CCHH
Q ss_conf 99577999999999999829-------------96799999999------8604-9------------9-------9289
Q 001619 284 LDDIQLKNWHDYLSFAEKQG-------------DFDWVVKLYER------CLIP-C------------A-------DYPE 324 (1043)
Q Consensus 284 ~~p~~~~~W~~yi~~e~~~g-------------~~e~v~~lyer------Ai~~-~------------~-------~~~~ 324 (1043)
. ..-..+|..|..|+...+ +++.++..|.+ ++.. . | ....
T Consensus 225 ~-~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 225 M-DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp C-SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHH
T ss_conf 3-779999999999997358311889998733777889999999999998675116654320000258998664899999
Q ss_pred HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf 99999999998099-------6899999999999873026068999999999808999999-999966417881259999
Q 001619 325 FWMRYVDFMESKGG-------REIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAAR-AAFPESYIDSDSRFIEKV 396 (1043)
Q Consensus 325 LWl~yA~~~e~~g~-------~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar-~il~ral~~~~~~~~~iw 396 (1043)
+|..|+.|+...+. ...++.+|++|+.. +|..+.+|+.||.|++..|+.+.|+ .+|++|+. .+|.+..+|
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~-~~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ-CIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH-HCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCHHHH
T ss_conf 99999999984876664101689999999999987-6997799999999998628678999999999998-689877999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----CCCC-----------CCHHHHHHHHHHHH----------------
Q ss_conf 999999998099999999999999998741-----0488-----------61799999999999----------------
Q 001619 397 TFKANMERRLGNFVAACDTYKEALETAAEQ-----RKFH-----------TLPLLYVQFSRLTY---------------- 444 (1043)
Q Consensus 397 ~~~a~lE~~~G~~e~Ar~iyekal~~~~~~-----~~~p-----------~~~~l~~~~ar~~~---------------- 444 (1043)
+.|+.+|++.|++++||++|+++++..... ...| ....+|+.|++++-
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999848899999999999988787766664116741245554113369999999999987088899999999999
Q ss_pred -----------HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf -----------999999998089764999999999986039974324895659999999999999809999999999999
Q 001619 445 -----------TELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQH 513 (1043)
Q Consensus 445 -----------~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra 513 (1043)
..++.+|...++. .++||.||++++..+|+. ..+|..|++|+...|+.+.|+.+++|+
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d--~e~Ar~ife~~Lk~~p~~---------~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKD--TKTACKVLELGLKYFATD---------GEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSC--CHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 736898869999999999996898--899999999999878995---------399999999998089778999999999
Q ss_pred HHHCC
Q ss_conf 96289
Q 001619 514 IKLFP 518 (1043)
Q Consensus 514 ~k~~p 518 (1043)
++.+|
T Consensus 531 l~~~~ 535 (679)
T 4e6h_A 531 IDKIS 535 (679)
T ss_dssp TTTSS
T ss_pred HHHCC
T ss_conf 87168
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=284.10 Aligned_cols=357 Identities=12% Similarity=0.112 Sum_probs=249.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH---CCCHH
Q ss_conf 918999999999999699998999999999998099-989999999999833---89999999999999720---89968
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCS-IDKVVEVFERAVQSA---TYSVDVWFHYCSLSMST---FEDPN 125 (1043)
Q Consensus 53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~-~e~a~~lfeRAL~~~---p~s~~LW~~Y~~~~~~~---~~~~e 125 (1043)
++++.++.||+|+|..+| |+++|+.|++++.+.++ .+.++.+|++||..+ +.+.+||..|++|+... .+.++
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 999999999999856699-9799999999999847569999999999998768886618999999999973606567999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHCC-CCCCHHHHHHHHHHHH
Q ss_conf 999999999996198777389999999999981455659999--------------9998617-8701899999999999
Q 001619 126 DVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQI--------------FVQTLRF-PSKKLHHYYDSFKKLA 190 (1043)
Q Consensus 126 ~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~ki--------------y~RaL~~-p~~~l~~~~~~y~~~~ 190 (1043)
.+|++|+|||. +|... ...+|..|..|+...+. ..+.++ |..+... +.... ..|..|..|+
T Consensus 107 ~vR~iy~rAL~-~P~~~-~~~lw~~Y~~fE~~~~~-~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~-~~W~~y~~~E 182 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGS-LSELWKDFENFELELNK-ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV-KNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHT-SCCTT-HHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_conf 99999999982-73546-99999999999987461-017889999817889999999999988743429-9999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87787653200245779998632166666766102247787421875135777999999887798989889999999999
Q 001619 191 GAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCF 270 (1043)
Q Consensus 191 ~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~f 270 (1043)
.... + +.+. ..........|
T Consensus 183 ~~~~--~-----------------------------------------~~~~-----------------~~~~~Rv~~~y 202 (493)
T 2uy1_A 183 MENG--M-----------------------------------------KLGG-----------------RPHESRMHFIH 202 (493)
T ss_dssp HTCT--T-----------------------------------------CCCH-----------------HHHHHHHHHHH
T ss_pred HCCC--C-----------------------------------------CCCC-----------------HHHHHHHHHHH
T ss_conf 6298--6-----------------------------------------5762-----------------12599999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC----------------------------
Q ss_conf 9971034777899995779999999999998299679999999986049992----------------------------
Q 001619 271 ENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADY---------------------------- 322 (1043)
Q Consensus 271 E~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~---------------------------- 322 (1043)
|.++.. .|+...+|..|+.|+...|+.+.++.+|+||+.. |..
T Consensus 203 e~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 203 NYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHC--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 999872--------8998999999999998759989999999998718-9969999998765105689999999998611
Q ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCC
Q ss_conf ------------89999999999980996899999999999873026068999999999808-99999999996641788
Q 001619 323 ------------PEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG-DTSAARAAFPESYIDSD 389 (1043)
Q Consensus 323 ------------~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g-~~e~Ar~il~ral~~~~ 389 (1043)
..+|+.|++|+.+.++++.||.+|++| .. .+....+|+.+|.+|...+ ++++||.+|+++++..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred CCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
T ss_conf 101223204561899999999998717889999999986-27-788859999999999987899689999999999878-
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 12599999999999980999999999999999987410488617999999999999999999980897649999999999
Q 001619 390 SRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISN 469 (1043)
Q Consensus 390 ~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~ller 469 (1043)
++...+|+.|++||...|+.++||.+|+++.. ... .|..|+.||..+|+ .+.+|+++++
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----------~~~--------lw~~~~~fE~~~G~---~~~~r~v~~~ 409 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLEK----------TSR--------MWDSMIEYEFMVGS---MELFRELVDQ 409 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----------BHH--------HHHHHHHHHHHHSC---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------HHH--------HHHHHHHHHHHCCC---HHHHHHHHHH
T ss_conf 99789999999999875987779999999998----------999--------99999999997799---9999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 860399743248956599999999999998099999999999
Q 001619 470 ALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWN 511 (1043)
Q Consensus 470 Al~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ 511 (1043)
++..+.... .+++..+...|+.||+.+|++.++..-|.
T Consensus 410 ~~~~~~~~~----~~~~~~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 410 KMDAIKADA----ILPPLPPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHHHTTC----CBCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999845554----57865422008999987504999988864
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=264.58 Aligned_cols=420 Identities=16% Similarity=0.207 Sum_probs=300.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999996999989999999999980999899999999998338999999999999972089968999999999996198
Q 001619 61 VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGK 140 (1043)
Q Consensus 61 vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vferAL~~lp~ 140 (1043)
||+++++.+|.++..|..++.. ...+++++++.+|+|||..+|.++++|+.|+.++... ++++.|+.+|+||+...|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCC-
T ss_conf 9366865397779999999999-9848799999999999987899799999999999866-988999999999872289-
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHCC-CCC-CHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
Q ss_conf 77738999999999998-145565----99999998617-870-1899999999999877876---5-320024577999
Q 001619 141 DYLCHTMWDKYIEFEIS-QQRWSS----LAQIFVQTLRF-PSK-KLHHYYDSFKKLAGAWKEE---L-ECESDSAMEFQS 209 (1043)
Q Consensus 141 ~~~s~~IW~~yi~fe~~-~~~~e~----a~kiy~RaL~~-p~~-~l~~~~~~y~~~~~~~~e~---l-~~~~~~~~~~~~ 209 (1043)
+..+|..|+.|+.. .++.+. ++++|++++.. +.. .-...|..|..++...... . ..+... ...++
T Consensus 78 ---~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-a~~~y 153 (530)
T 2ooe_A 78 ---HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITA-VRRVY 153 (530)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHH-HHHHH
T ss_pred ---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHHH
T ss_conf ---84899999999999746504689999999999999778886607999999999960777653787737999-99999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----C
Q ss_conf 863216666676610224778742187513577799999988779898988999999999999710347778999----9
Q 001619 210 ELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPL----D 285 (1043)
Q Consensus 210 e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~----~ 285 (1043)
..++.. + .......|.....+....+. ..++.+ .......|..+...+..+..++.++.+....+.+. +
T Consensus 154 ~~al~~--P-~~~~~~~~~~~~~~e~~~~~-~~~~~~---l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 154 QRGCVN--P-MINIEQLWRDYNKYEEGINI-HLAKKM---IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHTTS--C-CTTHHHHHHHHHHHHHHHCH-HHHHHH---HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHC--H-HHHHHHHHHHHHHHHHHHCH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 999966--6-63599999999999972166-679999---9985288887999999999999974203455899998657
Q ss_pred HHHHHHHHHHHHHHHHCC----CH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------CCCHH-------HHH
Q ss_conf 577999999999999829----96----799999999860499928999999999998-------09968-------999
Q 001619 286 DIQLKNWHDYLSFAEKQG----DF----DWVVKLYERCLIPCADYPEFWMRYVDFMES-------KGGRE-------IAS 343 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~~g----~~----e~v~~lyerAi~~~~~~~~LWl~yA~~~e~-------~g~~e-------~Ar 343 (1043)
.....+|..|+.|++.++ +. .++..+|++|+..+|.++.+|+.|+.+++. .|+++ .|+
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999998709755775126889999999999985789779999999999983546553265122121149999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999987302606899999999980899999999996641788125-999999999999809999999999999999
Q 001619 344 YALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRF-IEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 344 ~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~-~~iw~~~a~lE~~~G~~e~Ar~iyekal~~ 422 (1043)
.+|++|+....|+++.+|+.++.++++.|++++|+.+|++++.. .|.. ..+|+.++.++++.|+++.|+++|++|++.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999999868665799999999998638899999999998576-45683099999999999806889999999999735
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87410488617999999999999999999980897649999999999860399743248956599999999999998099
Q 001619 423 AAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGT 502 (1043)
Q Consensus 423 ~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~ 502 (1043)
.|....+|+..+.. .|. ..|+ .+++|.+|++++..+|++ ..+|..|+.++...|+
T Consensus 386 ------~~~~~~~~~~~a~~------~~~-~~~~---~~~A~~~~e~al~~~p~~---------~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 386 ------ARTRHHVYVTAALM------EYY-CSKD---KSVAFKIFELGLKKYGDI---------PEYVLAYIDYLSHLNE 440 (530)
T ss_dssp ------TTCCTHHHHHHHHH------HHH-HTCC---HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHTTTTC
T ss_pred ------CCCCHHHHHHHHHH------HHH-HCCC---HHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCC
T ss_conf ------57750899999999------998-8078---359999999999878997---------8999999999986798
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999628987
Q 001619 503 IHDIRNAWNQHIKLFPHT 520 (1043)
Q Consensus 503 ~~~a~~~~~ra~k~~p~~ 520 (1043)
.+.|+.+++|++..+|.+
T Consensus 441 ~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 866999999998415798
No 7
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=203.61 Aligned_cols=239 Identities=13% Similarity=0.220 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------CCCH-------HHHH
Q ss_conf 99989999999999980----999----8999999999983389999999999999720------8996-------8999
Q 001619 70 PLCYGYWRKYADHKARL----CSI----DKVVEVFERAVQSATYSVDVWFHYCSLSMST------FEDP-------NDVR 128 (1043)
Q Consensus 70 P~s~~lW~~yi~~e~~~----~~~----e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~------~~~~-------e~ar 128 (1043)
|.+.++|++|+++|.+. ++. ++|..+|++||..+|.++++|..|+.++... .+++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHHH
T ss_conf 99999999999998749666885589999999999999987689879999999999873534331254000000169999
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999996-1987773899999999999814556599999998617870189999999999987787653200245779
Q 001619 129 RLFKRALSF-VGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEF 207 (1043)
Q Consensus 129 ~vferAL~~-lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~ 207 (1043)
.+|+||+.. .|. +..+|..|+.++...++++.++.+|+++|.+++.
T Consensus 85 ~~~~rAl~~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------------------ 131 (308)
T 2ond_A 85 NIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------------------------ 131 (308)
T ss_dssp HHHHHHHTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------------------------------
T ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC------------------------------
T ss_conf 9999999985952---4799999899988558999999999999815366------------------------------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99863216666676610224778742187513577799999988779898988999999999999710347778999957
Q 001619 208 QSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDI 287 (1043)
Q Consensus 208 ~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~ 287 (1043)
T Consensus 132 -------------------------------------------------------------------------------- 131 (308)
T 2ond_A 132 -------------------------------------------------------------------------------- 131 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHH-HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 799-999999999982996799999999860499928999999999998-099689999999999987302606899999
Q 001619 288 QLK-NWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMES-KGGREIASYALDRATQIFLKRLPVIHLFNA 365 (1043)
Q Consensus 288 ~~~-~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~-~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a 365 (1043)
+.. +|..|+.++...|+++.++.+|++|+...|....+|+.++.+... .|+.+.|+.+|++|+.. .|+.+.+|..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~ 210 (308)
T 2ond_A 132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYI 210 (308)
T ss_dssp CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
T ss_conf 7358999999999984488999999999985689887999999999998759979999999999876-788299999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCC--CH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99998089999999999664178--81-25999999999999809999999999999999
Q 001619 366 RYKEQIGDTSAARAAFPESYIDS--DS-RFIEKVTFKANMERRLGNFVAACDTYKEALET 422 (1043)
Q Consensus 366 ~~E~~~g~~e~Ar~il~ral~~~--~~-~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~ 422 (1043)
.++...|++++|+.+|++++..+ .| +...+|..++.++...|+.+.|+.+++++++.
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999988998999999999974568998999999999999999849989999999999987
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=192.54 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 5779999999999998-------2996-------799999999860-499928999999999998099689999999999
Q 001619 286 DIQLKNWHDYLSFAEK-------QGDF-------DWVVKLYERCLI-PCADYPEFWMRYVDFMESKGGREIASYALDRAT 350 (1043)
Q Consensus 286 p~~~~~W~~yi~~e~~-------~g~~-------e~v~~lyerAi~-~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~ 350 (1043)
|.+..+|..|+.++.. .|++ ++++.+|+||+. ..|++..+|+.|+.++...|+++.|+.+|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89879999999999873534331254000000169999999999998595247999998999885589999999999998
Q ss_pred HHHHCCCCH-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 987302606-8999999999808999999999966417881259999999999998-09999999999999999874104
Q 001619 351 QIFLKRLPV-IHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERR-LGNFVAACDTYKEALETAAEQRK 428 (1043)
Q Consensus 351 ~~~~~~~p~-iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~-~G~~e~Ar~iyekal~~~~~~~~ 428 (1043)
.. .|..+. +|+.++.++.+.|+++.|+.+|.+++.. .|....+|+.++.++.. .|+++.|+++|+++++.
T Consensus 127 ~~-~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------ 198 (308)
T 2ond_A 127 AI-EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------ 198 (308)
T ss_dssp TS-SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------
T ss_pred HC-CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
T ss_conf 15-36673589999999999844889999999999856-89887999999999998759979999999999876------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 88617999999999999999999980897649999999999860399743248956599999999999998099999999
Q 001619 429 FHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRN 508 (1043)
Q Consensus 429 ~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~ 508 (1043)
+|..+.+|. .++.++...|. .+++|.+|++|+..++ ++++....+|..|+.|+...|+.+.+..
T Consensus 199 ~p~~~~~~~--------~~~~~~~~~g~---~~~A~~~~~~al~~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 199 YGDIPEYVL--------AYIDYLSHLNE---DNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HTTCHHHHH--------HHHHHHHTTCC---HHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCHHHHH--------HHHHHHHHCCC---HHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 788299999--------99999998899---8999999999974568-----9989999999999999998499899999
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999996289875
Q 001619 509 AWNQHIKLFPHTV 521 (1043)
Q Consensus 509 ~~~ra~k~~p~~~ 521 (1043)
++.|+++.+|.+.
T Consensus 263 ~~~~a~~~~p~~~ 275 (308)
T 2ond_A 263 VEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999998765302
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=188.02 Aligned_cols=359 Identities=14% Similarity=0.141 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 91899999999999969999899999999999809998999999999983389999999999999720899689999999
Q 001619 53 DDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFK 132 (1043)
Q Consensus 53 ~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vfe 132 (1043)
++++.+...|+++++..|.+...|...+......++++++...+++++...|.+.+.|..++...... ++++.|...|+
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 91 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-GQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 99999999999999849788999999999999868999999999999761978669999999999877-99999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996198777389999999999981455659999999861787018999999999998778765320024577999863
Q 001619 133 RALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELV 212 (1043)
Q Consensus 133 rAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i 212 (1043)
+|+...|. ....|...+......|+++.+...|.+++...+........ +..
T Consensus 92 ~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~-------------------- 143 (388)
T 1w3b_A 92 HALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD-----LGN-------------------- 143 (388)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHH-----HHH--------------------
T ss_pred HHHHCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH-----HHH--------------------
T ss_conf 99874965---39999999999998589999999999999759896899999-----999--------------------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 21666667661022477874218751357779999998877989898899999999999971034777899995779999
Q 001619 213 LEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNW 292 (1043)
Q Consensus 213 ~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W 292 (1043)
.....+ ....+...|++++. .+|.....|
T Consensus 144 --------------------~~~~~g-----------------------~~~~A~~~~~~al~--------~~p~~~~~~ 172 (388)
T 1w3b_A 144 --------------------LLKALG-----------------------RLEEAKACYLKAIE--------TQPNFAVAW 172 (388)
T ss_dssp --------------------HHHTTS-----------------------CHHHHHHHHHHHHH--------HCTTCHHHH
T ss_pred --------------------HHHHCC-----------------------CHHHHHHHHHHHHH--------HCCCCHHHH
T ss_conf --------------------999846-----------------------89999999999987--------298978999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999829967999999998604999289999999999980996899999999999873026068999999999808
Q 001619 293 HDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIG 372 (1043)
Q Consensus 293 ~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g 372 (1043)
...+..+...|+++.+...|++++...|.....|...+..+...|++++|...|++++.. .|+.+.+|...+......|
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 999999998599999999999998559886799999999999857899999999999852-9687899999999999868
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996641788125999999999999809999999999999999874104886179999999999999999999
Q 001619 373 DTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTELIKFTM 452 (1043)
Q Consensus 373 ~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~ 452 (1043)
+++.|...|++++.. .|.....|...+.+....|+++.|...|+++++. .|..+..|...+ ....
T Consensus 252 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~--------~~~~ 316 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLA--------NIKR 316 (388)
T ss_dssp CHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHH--------HHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHH--------HHHH
T ss_conf 899999999999864-9998899999999999869979999999999864------944499999999--------9999
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8089764999999999986039974324895659999999999999809999999999999962898
Q 001619 453 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH 519 (1043)
Q Consensus 453 ~~g~~~~ie~aR~llerAl~~~p~~~~~l~~~~~~~i~~lwl~fe~~~G~~~~a~~~~~ra~k~~p~ 519 (1043)
..|. .+.+..+|++++...|+. ...+..........|..+.|...+.++++..|.
T Consensus 317 ~~g~---~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 317 EQGN---IEEAVRLYRKALEVFPEF---------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TTTC---HHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HCCC---HHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 8489---999999999998609873---------999977999999868889999999999861999
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=183.23 Aligned_cols=355 Identities=13% Similarity=0.132 Sum_probs=289.2
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 17879999993988999999999999811999189999999999996999989999999999980999899999999998
Q 001619 22 GKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQ 101 (1043)
Q Consensus 22 ~~~~le~~i~~nP~d~~~W~~~i~~~e~~~~~~~~~ar~vyeraL~~~P~s~~lW~~yi~~e~~~~~~e~a~~lfeRAL~ 101 (1043)
-+..++..+..+|.+...|..+...+... ++.+.+...++++++..|.....|...+......|++++|..+|++++.
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999984978899999999999986--8999999999999761978669999999999877999999999999987
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 33899999999999997208996899999999999619877738999999999998145565999999986178701899
Q 001619 102 SATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHH 181 (1043)
Q Consensus 102 ~~p~s~~LW~~Y~~~~~~~~~~~e~ar~vferAL~~lp~~~~s~~IW~~yi~fe~~~~~~e~a~kiy~RaL~~p~~~l~~ 181 (1043)
..|..+..|..++...... ++++.|...|++++..-|. ...+|.....+....++++.+..+|.+++...+.....
T Consensus 96 ~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 171 (388)
T 1w3b_A 96 LKPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 4965399999999999985-8999999999999975989---68999999999998468999999999998729897899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987787653200245779998632166666766102247787421875135777999999887798989889
Q 001619 182 YYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEAS 261 (1043)
Q Consensus 182 ~~~~y~~~~~~~~e~l~~~~~~~~~~~~e~i~~~~l~~~~~~~e~~~~l~~~~~~~~~~e~ar~i~~~~~~~~~~y~~a~ 261 (1043)
+.. +.. . |...+
T Consensus 172 ~~~-----l~~----------------------------------------~-----------------------~~~~g 183 (388)
T 1w3b_A 172 WSN-----LGC----------------------------------------V-----------------------FNAQG 183 (388)
T ss_dssp HHH-----HHH----------------------------------------H-----------------------HHTTT
T ss_pred HHH-----HHH----------------------------------------H-----------------------HHHCC
T ss_conf 999-----999----------------------------------------9-----------------------99859
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999999999710347778999957799999999999982996799999999860499928999999999998099689
Q 001619 262 QLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREI 341 (1043)
Q Consensus 262 ~~~~~~~~fE~~i~r~~~~~~~~~p~~~~~W~~yi~~e~~~g~~e~v~~lyerAi~~~~~~~~LWl~yA~~~e~~g~~e~ 341 (1043)
+...++..|++++. .+|.....|...+..+...|+++.+...|++++...|....+|...+..+...|+++.
T Consensus 184 ~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 184 EIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp CHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999985--------5988679999999999985789999999999985296878999999999998688999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999998730260689999999998089999999999664178812599999999999980999999999999999
Q 001619 342 ASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALE 421 (1043)
Q Consensus 342 Ar~ilerA~~~~~~~~p~iwl~~a~~E~~~g~~e~Ar~il~ral~~~~~~~~~iw~~~a~lE~~~G~~e~Ar~iyekal~ 421 (1043)
|...|++++.. .|+.+.+|...+......|+++.|..+|++++.. .|.....|...+.+....|+++.|...|+++++
T Consensus 256 A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 256 AIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999864-9998899999999999869979999999999864-944499999999999984899999999999986
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 98741048861799999999999999999998089764999999999986039974
Q 001619 422 TAAEQRKFHTLPLLYVQFSRLTYTELIKFTMVHGGRSHISIVDAVISNALYSRPDV 477 (1043)
Q Consensus 422 ~~~~~~~~p~~~~l~~~~ar~~~~~~~~fe~~~g~~~~ie~aR~llerAl~~~p~~ 477 (1043)
. .|..+..|...+ ......|. .+.+...|++++...|+.
T Consensus 334 ~------~p~~~~~~~~l~--------~~~~~~g~---~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 334 V------FPEFAAAHSNLA--------SVLQQQGK---LQEALMHYKEAIRISPTF 372 (388)
T ss_dssp S------CTTCHHHHHHHH--------HHHHTTTC---CHHHHHHHHHHHTTCTTC
T ss_pred C------CCCCHHHHHHHH--------HHHHHCCC---HHHHHHHHHHHHHHCCCC
T ss_conf 0------987399997799--------99998688---899999999998619997
Done!