BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001620
         (1043 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1
            PE=2 SV=1
          Length = 1433

 Score = 34.3 bits (77), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 29/173 (16%)

Query: 260  EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDI 319
            EEE  KS E   +E K++++ + +FE+LK      + S+++  +++++VK  EE  RS  
Sbjct: 1125 EEELTKSKELLNLENKKVEELKKEFEALK--LAAAQKSQQLAALQEENVKLAEELGRSRD 1182

Query: 320  DVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTAL 379
            +V    +  E+   L  ++ E  +  S+       + ++IDE   +  +L+ S S  +AL
Sbjct: 1183 EVTSHQKLEEERSVLNNQLLEMKKREST-------LKKEIDE---ERASLQKSISDTSAL 1232

Query: 380  V-------QRLRTE----------TDELQAQIRTLEDDKASLINDKKDLSSKL 415
            +       ++LR E             LQ+ ++TLE DK  L    K+L  KL
Sbjct: 1233 ITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKL 1285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.126    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,638,346
Number of Sequences: 539616
Number of extensions: 16226259
Number of successful extensions: 94883
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 3567
Number of HSP's that attempted gapping in prelim test: 75985
Number of HSP's gapped (non-prelim): 13695
length of query: 1043
length of database: 191,569,459
effective HSP length: 128
effective length of query: 915
effective length of database: 122,498,611
effective search space: 112086229065
effective search space used: 112086229065
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 67 (30.4 bits)