Query 001620
Match_columns 1043
No_of_seqs 184 out of 212
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 100.0 4.4E-39 9.5E-44 284.0 8.1 74 11-84 1-74 (74)
2 TIGR02168 SMC_prok_B chromosom 99.1 9.7E-08 2.1E-12 120.2 31.4 263 178-458 677-939 (1179)
3 TIGR02169 SMC_prok_A chromosom 99.0 1.5E-07 3.2E-12 119.0 31.2 111 178-294 674-784 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.0 2.9E-07 6.3E-12 116.4 31.0 110 176-291 679-788 (1164)
5 COG1196 Smc Chromosome segrega 99.0 2.8E-07 6.1E-12 118.5 30.7 273 179-462 668-940 (1163)
6 TIGR02168 SMC_prok_B chromosom 98.9 4.1E-07 9E-12 114.6 30.6 108 178-291 670-777 (1179)
7 PRK02224 chromosome segregatio 98.8 1.6E-06 3.5E-11 108.1 28.5 72 353-425 568-639 (880)
8 PRK02224 chromosome segregatio 98.7 1.4E-05 3E-10 99.8 32.9 49 180-228 323-371 (880)
9 PF00261 Tropomyosin: Tropomyo 98.7 2.4E-05 5.3E-10 84.4 29.1 104 356-459 133-236 (237)
10 COG1196 Smc Chromosome segrega 98.6 1.1E-05 2.5E-10 104.0 30.1 257 177-442 673-934 (1163)
11 KOG0161 Myosin class II heavy 98.6 2.2E-05 4.7E-10 103.6 31.2 210 174-412 890-1117(1930)
12 TIGR00606 rad50 rad50. This fa 98.6 3.4E-05 7.4E-10 100.7 32.2 105 316-422 938-1044(1311)
13 KOG0250 DNA repair protein RAD 98.5 3.8E-05 8.2E-10 95.8 29.4 232 178-435 207-451 (1074)
14 PHA02562 46 endonuclease subun 98.5 0.00013 2.7E-09 86.7 31.6 228 178-425 174-405 (562)
15 PF00261 Tropomyosin: Tropomyo 98.5 8.8E-05 1.9E-09 80.2 26.3 85 351-435 142-226 (237)
16 KOG0996 Structural maintenance 98.4 0.00032 7E-09 88.0 32.6 51 178-228 778-828 (1293)
17 KOG0161 Myosin class II heavy 98.4 0.00011 2.4E-09 97.4 29.8 52 938-989 1716-1767(1930)
18 PRK03918 chromosome segregatio 98.4 0.00022 4.8E-09 89.1 30.3 43 183-225 389-431 (880)
19 PRK03918 chromosome segregatio 98.3 0.00013 2.8E-09 91.1 27.5 48 351-398 385-432 (880)
20 PF00038 Filament: Intermediat 98.3 0.0038 8.3E-08 69.3 36.1 61 363-423 194-254 (312)
21 PF10174 Cast: RIM-binding pro 98.3 0.0011 2.4E-08 82.4 34.5 283 174-464 110-428 (775)
22 TIGR00606 rad50 rad50. This fa 98.3 0.00025 5.4E-09 92.9 29.5 122 328-458 969-1092(1311)
23 KOG0250 DNA repair protein RAD 98.2 0.00056 1.2E-08 85.8 29.0 246 192-460 207-462 (1074)
24 PF00038 Filament: Intermediat 98.2 0.0015 3.3E-08 72.4 29.5 234 206-455 61-304 (312)
25 PRK04778 septation ring format 98.2 0.006 1.3E-07 73.9 36.5 204 235-454 277-489 (569)
26 PHA02562 46 endonuclease subun 98.2 0.00069 1.5E-08 80.6 27.6 30 197-226 172-201 (562)
27 PRK01156 chromosome segregatio 98.1 0.0027 5.9E-08 80.1 31.1 7 892-898 741-747 (895)
28 KOG0933 Structural maintenance 98.0 0.002 4.3E-08 80.2 27.6 196 235-459 750-945 (1174)
29 PF05701 WEMBL: Weak chloropla 98.0 0.004 8.7E-08 74.7 29.4 274 178-460 137-419 (522)
30 PRK04778 septation ring format 98.0 0.0062 1.3E-07 73.8 31.2 133 328-460 288-430 (569)
31 KOG0996 Structural maintenance 98.0 0.0026 5.6E-08 80.3 28.2 113 188-300 309-437 (1293)
32 KOG4643 Uncharacterized coiled 98.0 0.03 6.6E-07 70.2 36.2 53 177-229 176-228 (1195)
33 PRK11637 AmiB activator; Provi 97.9 0.0038 8.2E-08 72.9 26.9 79 353-431 173-251 (428)
34 COG1340 Uncharacterized archae 97.9 0.006 1.3E-07 68.2 26.9 89 328-423 157-245 (294)
35 PF10174 Cast: RIM-binding pro 97.9 0.0066 1.4E-07 75.7 29.9 248 174-458 290-538 (775)
36 KOG0976 Rho/Rac1-interacting s 97.9 0.0043 9.3E-08 75.5 26.4 216 177-392 84-305 (1265)
37 KOG0971 Microtubule-associated 97.9 0.0071 1.5E-07 74.7 28.0 35 260-294 324-358 (1243)
38 KOG0995 Centromere-associated 97.8 0.012 2.7E-07 70.2 29.0 255 183-458 233-527 (581)
39 PRK11637 AmiB activator; Provi 97.8 0.0085 1.8E-07 70.0 27.7 84 356-439 169-252 (428)
40 KOG0964 Structural maintenance 97.8 0.014 3.1E-07 72.8 29.7 83 355-437 409-491 (1200)
41 PF05701 WEMBL: Weak chloropla 97.8 0.042 9.1E-07 66.2 33.1 280 174-453 37-356 (522)
42 KOG0977 Nuclear envelope prote 97.8 0.0038 8.2E-08 74.7 24.0 99 178-282 92-190 (546)
43 PF07888 CALCOCO1: Calcium bin 97.8 0.015 3.2E-07 69.9 28.8 98 178-281 143-240 (546)
44 PF07888 CALCOCO1: Calcium bin 97.8 0.033 7.2E-07 67.0 31.3 92 369-460 362-457 (546)
45 PF06160 EzrA: Septation ring 97.8 0.066 1.4E-06 65.1 34.3 267 173-463 189-466 (560)
46 KOG0971 Microtubule-associated 97.8 0.021 4.6E-07 70.7 29.5 22 831-852 998-1019(1243)
47 KOG4674 Uncharacterized conser 97.7 0.0081 1.8E-07 79.5 27.7 108 178-291 668-775 (1822)
48 KOG0018 Structural maintenance 97.7 0.0048 1E-07 77.5 24.4 251 174-445 230-483 (1141)
49 COG1340 Uncharacterized archae 97.7 0.067 1.5E-06 60.1 31.0 82 376-457 156-237 (294)
50 KOG4674 Uncharacterized conser 97.7 0.015 3.4E-07 77.0 28.3 227 178-422 1153-1411(1822)
51 PRK04863 mukB cell division pr 97.6 0.034 7.3E-07 74.0 31.0 202 178-398 279-483 (1486)
52 KOG0976 Rho/Rac1-interacting s 97.6 0.054 1.2E-06 66.5 29.5 139 312-457 252-402 (1265)
53 COG4942 Membrane-bound metallo 97.6 0.053 1.2E-06 63.5 28.1 51 241-291 60-110 (420)
54 KOG0612 Rho-associated, coiled 97.5 0.1 2.2E-06 67.0 31.9 30 831-860 1051-1080(1317)
55 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.052 1.1E-06 66.8 29.2 22 204-225 207-228 (650)
56 KOG0964 Structural maintenance 97.5 0.062 1.4E-06 67.4 29.0 262 193-457 217-497 (1200)
57 PF12128 DUF3584: Protein of u 97.5 0.085 1.8E-06 69.3 32.2 119 328-453 749-874 (1201)
58 PF06160 EzrA: Septation ring 97.5 0.088 1.9E-06 64.0 30.2 78 385-462 351-428 (560)
59 KOG0018 Structural maintenance 97.4 0.065 1.4E-06 67.9 28.4 234 181-460 662-896 (1141)
60 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.16 3.5E-06 62.7 30.7 50 180-229 204-253 (650)
61 PF05667 DUF812: Protein of un 97.3 0.2 4.3E-06 61.5 30.5 210 175-411 325-538 (594)
62 PF09728 Taxilin: Myosin-like 97.3 0.25 5.4E-06 56.1 29.1 240 178-439 43-298 (309)
63 KOG0977 Nuclear envelope prote 97.3 0.048 1E-06 65.6 24.3 88 196-283 46-135 (546)
64 KOG4643 Uncharacterized coiled 97.3 0.32 7E-06 61.5 31.5 43 3-47 154-196 (1195)
65 PF15070 GOLGA2L5: Putative go 97.3 0.16 3.5E-06 62.5 28.9 224 183-453 2-242 (617)
66 KOG0933 Structural maintenance 97.3 0.15 3.2E-06 64.4 28.2 44 36-83 459-502 (1174)
67 COG0419 SbcC ATPase involved i 97.2 0.25 5.5E-06 63.2 31.0 23 705-727 717-739 (908)
68 KOG1003 Actin filament-coating 97.2 0.094 2E-06 55.8 22.3 110 176-291 2-111 (205)
69 PF09726 Macoilin: Transmembra 97.2 0.28 6.1E-06 61.3 30.0 109 328-443 544-652 (697)
70 KOG1029 Endocytic adaptor prot 97.2 0.1 2.2E-06 64.2 24.9 68 353-420 447-521 (1118)
71 PF12128 DUF3584: Protein of u 97.2 0.16 3.4E-06 66.9 29.1 43 415-457 492-534 (1201)
72 PF01576 Myosin_tail_1: Myosin 97.1 0.00011 2.4E-09 92.4 0.0 254 181-453 7-262 (859)
73 COG1579 Zn-ribbon protein, pos 97.1 0.014 3.1E-07 63.7 15.7 111 174-288 34-144 (239)
74 PF04912 Dynamitin: Dynamitin 97.0 0.29 6.3E-06 56.9 26.2 172 273-453 207-387 (388)
75 KOG0946 ER-Golgi vesicle-tethe 97.0 0.1 2.2E-06 64.6 22.8 127 322-448 806-939 (970)
76 PF05622 HOOK: HOOK protein; 97.0 0.0002 4.2E-09 88.5 0.0 242 185-443 179-421 (713)
77 COG3883 Uncharacterized protei 96.9 0.15 3.3E-06 56.7 21.9 45 240-284 59-103 (265)
78 PF01576 Myosin_tail_1: Myosin 96.9 0.00023 5E-09 89.6 0.0 263 178-455 166-433 (859)
79 KOG0994 Extracellular matrix g 96.9 0.58 1.2E-05 60.0 28.3 47 178-224 1492-1543(1758)
80 PF15070 GOLGA2L5: Putative go 96.9 1.6 3.4E-05 54.1 32.2 110 178-291 22-131 (617)
81 PRK04863 mukB cell division pr 96.9 0.96 2.1E-05 60.9 32.2 47 352-398 553-599 (1486)
82 TIGR02680 conserved hypothetic 96.9 1.2 2.5E-05 59.8 33.1 97 184-291 741-837 (1353)
83 KOG0612 Rho-associated, coiled 96.9 0.77 1.7E-05 59.5 29.6 19 748-766 1063-1081(1317)
84 KOG4673 Transcription factor T 96.8 0.13 2.8E-06 62.6 21.6 160 265-448 406-565 (961)
85 PF04849 HAP1_N: HAP1 N-termin 96.8 0.27 5.8E-06 55.8 22.9 40 248-287 161-200 (306)
86 PRK11281 hypothetical protein; 96.8 1.1 2.4E-05 58.8 31.4 202 234-453 122-332 (1113)
87 KOG0978 E3 ubiquitin ligase in 96.8 0.99 2.1E-05 56.2 29.4 107 356-463 544-650 (698)
88 PF13514 AAA_27: AAA domain 96.8 1.2 2.5E-05 58.6 32.1 66 328-398 860-930 (1111)
89 PF09726 Macoilin: Transmembra 96.8 0.37 7.9E-06 60.3 25.8 114 333-453 542-655 (697)
90 PF05010 TACC: Transforming ac 96.7 0.57 1.2E-05 50.6 23.9 195 178-406 9-203 (207)
91 KOG0995 Centromere-associated 96.7 1.3 2.7E-05 53.8 28.5 207 240-459 266-503 (581)
92 PF06008 Laminin_I: Laminin Do 96.7 1 2.2E-05 49.8 26.2 104 330-433 157-261 (264)
93 PRK09039 hypothetical protein; 96.6 0.29 6.2E-06 56.3 22.3 139 247-425 46-184 (343)
94 PF05622 HOOK: HOOK protein; 96.6 0.00048 1E-08 85.1 0.0 219 180-418 195-424 (713)
95 COG1579 Zn-ribbon protein, pos 96.6 0.12 2.7E-06 56.7 18.1 52 353-404 92-143 (239)
96 COG4477 EzrA Negative regulato 96.6 1.2 2.6E-05 53.7 27.2 131 328-460 254-394 (570)
97 PF12718 Tropomyosin_1: Tropom 96.5 0.061 1.3E-06 54.7 13.9 55 390-444 78-132 (143)
98 PF12718 Tropomyosin_1: Tropom 96.5 0.097 2.1E-06 53.3 15.2 105 353-457 31-138 (143)
99 COG4942 Membrane-bound metallo 96.5 2.3 4.9E-05 50.4 28.0 81 354-434 172-252 (420)
100 KOG0980 Actin-binding protein 96.4 4.5 9.8E-05 51.3 35.0 72 353-424 469-540 (980)
101 PF05667 DUF812: Protein of un 96.4 0.95 2.1E-05 55.7 25.7 91 174-267 331-421 (594)
102 KOG0962 DNA repair protein RAD 96.4 0.76 1.6E-05 60.2 25.7 108 352-461 973-1082(1294)
103 PF14662 CCDC155: Coiled-coil 96.4 1.5 3.2E-05 46.9 23.5 48 245-292 65-112 (193)
104 PF05483 SCP-1: Synaptonemal c 96.3 3.8 8.3E-05 50.8 29.5 253 186-459 290-559 (786)
105 PF14662 CCDC155: Coiled-coil 96.3 0.69 1.5E-05 49.4 20.8 95 328-422 94-188 (193)
106 KOG1029 Endocytic adaptor prot 96.3 2.6 5.7E-05 52.6 27.9 156 255-426 417-583 (1118)
107 PF13514 AAA_27: AAA domain 96.2 3.6 7.9E-05 54.1 31.5 44 328-373 821-870 (1111)
108 COG5185 HEC1 Protein involved 96.2 0.73 1.6E-05 54.6 22.2 58 355-412 471-528 (622)
109 PF09789 DUF2353: Uncharacteri 96.2 0.73 1.6E-05 52.7 21.9 105 179-296 10-114 (319)
110 KOG0994 Extracellular matrix g 96.2 1.7 3.7E-05 56.1 26.4 63 189-260 1419-1481(1758)
111 TIGR02680 conserved hypothetic 96.2 1.1 2.3E-05 60.1 26.5 48 247-294 786-833 (1353)
112 KOG4673 Transcription factor T 96.1 3.9 8.4E-05 50.6 27.9 62 401-462 706-767 (961)
113 PF09730 BicD: Microtubule-ass 96.0 6.6 0.00014 49.5 31.8 99 734-852 585-686 (717)
114 PF08317 Spc7: Spc7 kinetochor 96.0 0.82 1.8E-05 52.1 21.4 64 363-426 208-271 (325)
115 COG0419 SbcC ATPase involved i 96.0 6 0.00013 51.0 31.3 7 909-915 776-782 (908)
116 PF05557 MAD: Mitotic checkpoi 96.0 0.0018 4E-08 80.2 0.0 58 361-418 340-397 (722)
117 PF10473 CENP-F_leu_zip: Leuci 95.9 0.32 7E-06 49.6 15.7 123 336-458 10-132 (140)
118 PF04849 HAP1_N: HAP1 N-termin 95.9 2.8 6E-05 47.9 24.5 103 352-454 201-303 (306)
119 PRK10929 putative mechanosensi 95.9 9.9 0.00021 50.3 32.7 202 234-453 103-312 (1109)
120 KOG0946 ER-Golgi vesicle-tethe 95.8 1 2.2E-05 56.4 21.9 203 241-460 665-881 (970)
121 PF09787 Golgin_A5: Golgin sub 95.8 6.6 0.00014 47.7 29.5 101 352-459 276-380 (511)
122 KOG1003 Actin filament-coating 95.8 1.7 3.6E-05 46.7 20.6 48 245-292 44-91 (205)
123 KOG0963 Transcription factor/C 95.8 2 4.2E-05 52.7 23.7 56 24-79 11-74 (629)
124 COG3883 Uncharacterized protei 95.7 2.4 5.2E-05 47.5 22.6 178 208-440 33-217 (265)
125 COG5185 HEC1 Protein involved 95.7 5.1 0.00011 47.8 26.0 59 397-458 485-543 (622)
126 KOG3958 Putative dynamitin [Cy 95.7 5 0.00011 45.5 26.2 135 314-453 230-369 (371)
127 PF05557 MAD: Mitotic checkpoi 95.7 0.096 2.1E-06 65.3 13.2 34 356-389 502-535 (722)
128 KOG0962 DNA repair protein RAD 95.6 4.2 9.1E-05 53.7 27.2 78 201-284 873-950 (1294)
129 PF15619 Lebercilin: Ciliary p 95.6 3.5 7.6E-05 44.2 22.4 35 385-419 157-191 (194)
130 PF05911 DUF869: Plant protein 95.6 3.8 8.3E-05 52.0 26.1 117 348-464 629-763 (769)
131 TIGR03007 pepcterm_ChnLen poly 95.5 2.6 5.7E-05 50.2 23.6 92 328-419 253-351 (498)
132 KOG0999 Microtubule-associated 95.5 0.87 1.9E-05 54.8 19.0 89 358-446 101-189 (772)
133 PLN03229 acetyl-coenzyme A car 95.5 1.8 3.9E-05 54.2 22.4 49 247-295 528-591 (762)
134 PF08317 Spc7: Spc7 kinetochor 95.4 0.73 1.6E-05 52.5 18.0 34 249-282 144-177 (325)
135 KOG0979 Structural maintenance 95.4 4.5 9.7E-05 52.1 25.6 181 178-398 174-359 (1072)
136 KOG0978 E3 ubiquitin ligase in 95.3 11 0.00025 47.3 28.8 204 244-457 397-603 (698)
137 PF08614 ATG16: Autophagy prot 95.3 0.082 1.8E-06 55.8 9.2 109 328-443 73-181 (194)
138 KOG0963 Transcription factor/C 95.3 11 0.00024 46.6 34.6 67 254-331 228-294 (629)
139 KOG0979 Structural maintenance 95.2 1.6 3.5E-05 55.8 20.9 177 235-433 183-359 (1072)
140 PF05911 DUF869: Plant protein 95.1 2.7 5.8E-05 53.3 22.9 83 210-298 82-164 (769)
141 PRK09039 hypothetical protein; 95.1 0.46 1E-05 54.7 15.2 10 331-340 55-64 (343)
142 KOG4593 Mitotic checkpoint pro 95.0 2.5 5.5E-05 52.3 21.6 98 178-291 98-195 (716)
143 TIGR00634 recN DNA repair prot 94.9 4.9 0.00011 49.1 24.0 18 328-345 279-296 (563)
144 PF04012 PspA_IM30: PspA/IM30 94.9 1.7 3.8E-05 46.4 17.8 112 181-294 26-138 (221)
145 PF06008 Laminin_I: Laminin Do 94.8 8 0.00017 42.8 29.0 99 178-296 17-115 (264)
146 PF08614 ATG16: Autophagy prot 94.8 0.22 4.8E-06 52.6 10.7 41 413-453 130-170 (194)
147 COG4372 Uncharacterized protei 94.7 9.4 0.0002 44.8 23.8 84 178-267 88-178 (499)
148 PLN03229 acetyl-coenzyme A car 94.7 4.3 9.3E-05 51.0 22.4 52 205-266 435-498 (762)
149 PRK10246 exonuclease subunit S 94.6 20 0.00043 47.4 29.6 7 108-114 500-506 (1047)
150 KOG0980 Actin-binding protein 94.6 19 0.00042 46.0 27.9 54 361-414 463-516 (980)
151 PF13851 GAS: Growth-arrest sp 94.5 3.2 7E-05 44.6 18.7 105 178-292 27-131 (201)
152 TIGR00634 recN DNA repair prot 94.3 4.9 0.00011 49.1 22.1 72 386-457 302-376 (563)
153 COG4372 Uncharacterized protei 94.3 6.6 0.00014 46.0 21.3 52 353-404 227-278 (499)
154 KOG0982 Centrosomal protein Nu 94.2 3.3 7.1E-05 48.9 18.9 69 369-443 365-433 (502)
155 TIGR01843 type_I_hlyD type I s 94.2 10 0.00023 43.4 23.3 19 177-195 80-98 (423)
156 COG4477 EzrA Negative regulato 94.2 18 0.0004 44.1 29.0 81 381-461 350-430 (570)
157 PF09789 DUF2353: Uncharacteri 94.0 5 0.00011 46.2 19.6 81 378-458 133-220 (319)
158 PF05483 SCP-1: Synaptonemal c 93.8 24 0.00051 44.3 30.2 168 200-409 216-387 (786)
159 PF15619 Lebercilin: Ciliary p 93.8 5.4 0.00012 42.8 18.6 38 255-292 69-106 (194)
160 TIGR03007 pepcterm_ChnLen poly 93.8 8.4 0.00018 46.0 22.2 132 257-396 157-293 (498)
161 KOG0243 Kinesin-like protein [ 93.6 0.92 2E-05 58.3 14.4 109 353-461 444-559 (1041)
162 KOG4593 Mitotic checkpoint pro 93.6 26 0.00056 44.0 26.0 70 372-441 385-454 (716)
163 PF14915 CCDC144C: CCDC144C pr 93.6 16 0.00036 41.7 30.7 109 350-458 179-295 (305)
164 PF04012 PspA_IM30: PspA/IM30 93.6 12 0.00026 40.1 22.5 118 241-407 24-141 (221)
165 PF13166 AAA_13: AAA domain 93.4 18 0.00039 45.0 25.0 15 705-719 612-626 (712)
166 PF12795 MscS_porin: Mechanose 93.3 11 0.00025 41.0 20.5 188 247-439 18-211 (240)
167 PF11559 ADIP: Afadin- and alp 93.2 5.3 0.00011 40.6 16.7 120 328-457 30-149 (151)
168 PF10186 Atg14: UV radiation r 93.2 4.4 9.6E-05 44.4 17.4 108 328-435 33-141 (302)
169 PF04912 Dynamitin: Dynamitin 93.2 10 0.00022 44.3 21.2 22 178-199 94-115 (388)
170 PF09755 DUF2046: Uncharacteri 93.2 4.2 9.2E-05 46.5 17.2 220 181-445 23-261 (310)
171 PF05384 DegS: Sensor protein 93.1 4.2 9.1E-05 42.5 15.9 142 314-455 11-154 (159)
172 PF10473 CENP-F_leu_zip: Leuci 93.1 3.8 8.3E-05 42.0 15.2 92 360-451 20-111 (140)
173 PRK10698 phage shock protein P 93.1 6.9 0.00015 42.7 18.3 117 174-292 20-137 (222)
174 PF12252 SidE: Dot/Icm substra 92.8 38 0.00082 44.4 25.8 211 209-453 1066-1287(1439)
175 PF09730 BicD: Microtubule-ass 92.8 37 0.00079 43.2 33.1 50 813-862 583-636 (717)
176 PF10186 Atg14: UV radiation r 92.7 6.4 0.00014 43.2 17.8 80 330-416 21-108 (302)
177 PF13851 GAS: Growth-arrest sp 92.6 4.4 9.5E-05 43.6 15.7 76 384-459 85-168 (201)
178 KOG0243 Kinesin-like protein [ 92.5 45 0.00098 43.8 27.8 15 72-86 326-340 (1041)
179 PRK11281 hypothetical protein; 92.5 33 0.00072 45.7 26.2 128 245-390 126-253 (1113)
180 PF04156 IncA: IncA protein; 92.5 3.2 6.9E-05 43.3 14.3 62 351-412 89-150 (191)
181 COG4026 Uncharacterized protei 92.4 1.6 3.6E-05 47.5 12.1 94 330-428 113-206 (290)
182 TIGR01005 eps_transp_fam exopo 92.4 25 0.00054 44.4 24.4 135 253-395 186-333 (754)
183 KOG1937 Uncharacterized conser 92.4 31 0.00067 41.5 30.4 138 247-402 286-427 (521)
184 PF10212 TTKRSYEDQ: Predicted 92.3 12 0.00026 45.6 20.3 78 381-461 437-514 (518)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.3 5.7 0.00012 39.8 15.2 107 328-444 23-129 (132)
186 KOG0249 LAR-interacting protei 92.3 5.5 0.00012 49.7 17.5 57 364-420 202-258 (916)
187 PF06005 DUF904: Protein of un 92.3 1.6 3.5E-05 39.9 10.3 45 378-422 25-69 (72)
188 PRK10246 exonuclease subunit S 92.3 50 0.0011 43.7 29.8 26 196-221 620-645 (1047)
189 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.3 14 0.00029 37.1 18.2 44 185-228 3-46 (132)
190 PRK10698 phage shock protein P 92.3 20 0.00044 39.1 20.7 52 239-290 23-74 (222)
191 KOG0982 Centrosomal protein Nu 92.1 32 0.0007 41.1 23.0 49 368-416 371-427 (502)
192 COG4717 Uncharacterized conser 91.9 48 0.001 42.8 25.7 100 180-279 552-652 (984)
193 PF07111 HCR: Alpha helical co 91.7 45 0.00098 42.1 33.2 255 178-457 169-438 (739)
194 smart00787 Spc7 Spc7 kinetocho 91.7 2.9 6.3E-05 47.8 13.8 82 359-440 174-259 (312)
195 PF04156 IncA: IncA protein; 91.6 6.7 0.00014 41.0 15.5 66 354-419 85-150 (191)
196 smart00787 Spc7 Spc7 kinetocho 91.2 15 0.00032 42.3 18.8 55 371-425 211-265 (312)
197 TIGR01005 eps_transp_fam exopo 91.2 16 0.00035 46.1 20.9 109 328-447 294-403 (754)
198 TIGR01000 bacteriocin_acc bact 91.2 32 0.0007 41.0 22.4 28 265-292 169-196 (457)
199 TIGR03017 EpsF chain length de 91.2 16 0.00035 42.8 19.8 35 195-229 167-201 (444)
200 COG2433 Uncharacterized conser 91.1 4.3 9.2E-05 49.9 14.9 98 353-454 411-508 (652)
201 PF12777 MT: Microtubule-bindi 90.8 6.7 0.00015 45.2 15.8 92 362-460 219-310 (344)
202 PF06005 DUF904: Protein of un 90.8 2.2 4.8E-05 39.1 9.5 59 367-425 7-65 (72)
203 KOG1853 LIS1-interacting prote 90.7 6.8 0.00015 43.6 14.7 128 328-458 26-157 (333)
204 PF10168 Nup88: Nuclear pore c 90.3 10 0.00023 48.0 18.1 73 178-256 550-623 (717)
205 PRK10869 recombination and rep 90.3 55 0.0012 40.4 26.8 30 196-225 154-183 (553)
206 PF09755 DUF2046: Uncharacteri 90.2 41 0.00088 38.8 29.6 21 354-374 182-202 (310)
207 PF15450 DUF4631: Domain of un 90.2 54 0.0012 40.2 22.6 70 328-397 307-377 (531)
208 KOG1937 Uncharacterized conser 90.1 50 0.0011 39.8 23.5 34 261-294 345-378 (521)
209 COG1842 PspA Phage shock prote 90.1 25 0.00055 38.7 18.6 119 175-294 21-139 (225)
210 PF04582 Reo_sigmaC: Reovirus 89.9 0.37 8.1E-06 55.0 4.7 126 328-460 27-152 (326)
211 PF04111 APG6: Autophagy prote 89.3 4.7 0.0001 46.1 12.9 43 359-401 45-87 (314)
212 PF10212 TTKRSYEDQ: Predicted 89.3 55 0.0012 40.2 21.9 96 336-440 412-514 (518)
213 KOG1899 LAR transmembrane tyro 89.3 14 0.00031 45.6 17.0 48 178-225 104-158 (861)
214 KOG4360 Uncharacterized coiled 88.9 38 0.00082 41.3 19.9 92 363-454 211-302 (596)
215 PF09728 Taxilin: Myosin-like 88.8 50 0.0011 38.0 29.1 32 177-208 21-52 (309)
216 KOG0999 Microtubule-associated 88.8 70 0.0015 39.5 25.4 112 328-446 106-220 (772)
217 PLN02939 transferase, transfer 88.6 25 0.00054 46.0 19.7 43 358-400 352-398 (977)
218 PF09304 Cortex-I_coil: Cortex 88.6 12 0.00026 36.9 13.1 66 359-424 11-76 (107)
219 PF10146 zf-C4H2: Zinc finger- 88.5 12 0.00026 41.4 14.7 64 393-456 33-96 (230)
220 PF15066 CAGE1: Cancer-associa 88.2 50 0.0011 40.0 20.1 110 180-300 306-415 (527)
221 KOG4438 Centromere-associated 88.1 67 0.0015 38.5 23.7 48 351-398 263-313 (446)
222 PF10168 Nup88: Nuclear pore c 87.7 7.5 0.00016 49.2 14.3 55 240-294 565-619 (717)
223 PRK15422 septal ring assembly 87.5 5 0.00011 37.5 9.3 64 369-432 9-72 (79)
224 PF10146 zf-C4H2: Zinc finger- 87.4 9 0.0002 42.3 13.0 98 352-449 3-103 (230)
225 PF13166 AAA_13: AAA domain 87.4 88 0.0019 39.1 25.7 7 167-173 245-251 (712)
226 TIGR01843 type_I_hlyD type I s 87.3 62 0.0013 37.2 23.2 15 439-453 251-265 (423)
227 PF15450 DUF4631: Domain of un 87.1 85 0.0018 38.6 27.8 24 74-97 48-71 (531)
228 PF12325 TMF_TATA_bd: TATA ele 86.9 31 0.00066 34.7 15.2 48 178-225 16-63 (120)
229 PRK15422 septal ring assembly 86.6 5.6 0.00012 37.2 9.1 72 352-423 6-77 (79)
230 PF00769 ERM: Ezrin/radixin/mo 86.5 26 0.00056 38.9 16.1 102 359-460 28-129 (246)
231 PF14992 TMCO5: TMCO5 family 86.5 32 0.00069 39.2 16.7 91 258-365 8-99 (280)
232 TIGR02977 phageshock_pspA phag 86.4 54 0.0012 35.6 20.4 109 181-291 27-136 (219)
233 PRK10869 recombination and rep 86.3 83 0.0018 38.9 21.7 31 258-288 168-198 (553)
234 COG2433 Uncharacterized conser 86.3 7.1 0.00015 48.1 12.4 89 355-447 420-508 (652)
235 PF07111 HCR: Alpha helical co 86.3 1.1E+02 0.0023 39.0 32.1 256 178-447 338-602 (739)
236 PRK04406 hypothetical protein; 86.3 3.2 7E-05 38.3 7.5 46 359-404 6-51 (75)
237 PF14073 Cep57_CLD: Centrosome 85.8 55 0.0012 35.1 18.1 168 247-444 4-172 (178)
238 PF11559 ADIP: Afadin- and alp 85.7 35 0.00077 34.6 15.5 47 379-425 60-106 (151)
239 PF00769 ERM: Ezrin/radixin/mo 85.4 39 0.00085 37.5 16.8 45 244-288 23-67 (246)
240 TIGR01000 bacteriocin_acc bact 85.4 90 0.002 37.3 23.7 27 189-215 94-120 (457)
241 COG4026 Uncharacterized protei 85.4 5.7 0.00012 43.6 9.9 72 383-454 133-204 (290)
242 PF13870 DUF4201: Domain of un 85.3 51 0.0011 34.4 21.8 38 348-385 136-173 (177)
243 PF11932 DUF3450: Protein of u 85.3 21 0.00046 39.2 14.7 94 353-446 52-154 (251)
244 PRK02119 hypothetical protein; 85.3 3.5 7.7E-05 37.8 7.2 46 360-405 5-50 (73)
245 TIGR03017 EpsF chain length de 85.2 86 0.0019 36.9 23.8 37 257-293 167-203 (444)
246 PRK10884 SH3 domain-containing 85.0 10 0.00022 41.2 11.7 14 404-417 137-150 (206)
247 PF05384 DegS: Sensor protein 84.6 57 0.0012 34.4 18.8 132 242-405 22-153 (159)
248 PF01496 V_ATPase_I: V-type AT 84.6 4.6 0.0001 51.0 10.4 105 187-296 12-116 (759)
249 PF04102 SlyX: SlyX; InterPro 84.6 3.8 8.3E-05 36.9 7.1 44 363-406 3-46 (69)
250 PF13870 DUF4201: Domain of un 84.5 51 0.0011 34.4 16.4 69 353-421 66-134 (177)
251 PF05266 DUF724: Protein of un 84.4 16 0.00035 39.2 12.8 113 174-293 65-177 (190)
252 PRK10884 SH3 domain-containing 84.4 11 0.00024 40.9 11.7 42 412-453 124-165 (206)
253 KOG2991 Splicing regulator [RN 84.2 72 0.0016 36.1 17.6 173 258-457 119-301 (330)
254 COG1842 PspA Phage shock prote 84.0 22 0.00047 39.2 13.9 125 334-461 11-140 (225)
255 PRK04406 hypothetical protein; 84.0 5.4 0.00012 36.8 7.8 56 350-405 4-59 (75)
256 PF15294 Leu_zip: Leucine zipp 83.9 8.8 0.00019 43.4 11.0 53 375-427 129-181 (278)
257 PF12795 MscS_porin: Mechanose 83.9 72 0.0016 34.9 23.0 194 178-389 18-217 (240)
258 PF12325 TMF_TATA_bd: TATA ele 83.7 34 0.00073 34.4 13.9 38 361-398 20-57 (120)
259 PF04582 Reo_sigmaC: Reovirus 83.5 1.9 4.1E-05 49.5 5.8 126 327-459 33-158 (326)
260 TIGR02977 phageshock_pspA phag 83.4 72 0.0016 34.6 23.3 51 240-290 24-74 (219)
261 PF15397 DUF4618: Domain of un 83.2 88 0.0019 35.4 22.6 78 258-340 71-149 (258)
262 PRK02793 phi X174 lysis protei 82.8 5 0.00011 36.7 7.1 43 362-404 6-48 (72)
263 PF14915 CCDC144C: CCDC144C pr 82.7 99 0.0021 35.7 31.6 229 182-458 3-238 (305)
264 PF09787 Golgin_A5: Golgin sub 82.4 1.3E+02 0.0028 36.8 24.6 44 409-452 388-431 (511)
265 PF05278 PEARLI-4: Arabidopsis 82.2 32 0.0007 38.9 14.4 34 328-365 148-181 (269)
266 PF07106 TBPIP: Tat binding pr 82.2 12 0.00025 38.9 10.5 12 330-341 73-84 (169)
267 PF06785 UPF0242: Uncharacteri 82.0 42 0.00091 39.1 15.3 89 365-453 121-220 (401)
268 PF13863 DUF4200: Domain of un 81.5 55 0.0012 31.9 14.8 94 189-288 15-108 (126)
269 PF04102 SlyX: SlyX; InterPro 81.4 6.3 0.00014 35.6 7.2 51 355-405 2-52 (69)
270 COG3074 Uncharacterized protei 81.3 13 0.00028 34.3 8.9 21 354-374 8-28 (79)
271 PF11570 E2R135: Coiled-coil r 81.2 35 0.00077 34.8 12.8 105 174-284 11-135 (136)
272 PF12329 TMF_DNA_bd: TATA elem 80.6 4.8 0.0001 37.0 6.2 15 331-345 7-21 (74)
273 PRK00295 hypothetical protein; 80.6 7.1 0.00015 35.4 7.2 41 364-404 5-45 (68)
274 PRK02119 hypothetical protein; 80.3 9.1 0.0002 35.1 7.9 54 352-405 4-57 (73)
275 PRK03947 prefoldin subunit alp 80.2 41 0.00089 33.8 13.3 97 356-456 5-137 (140)
276 PRK02793 phi X174 lysis protei 80.2 9.1 0.0002 35.0 7.8 54 353-406 4-57 (72)
277 PRK04325 hypothetical protein; 80.1 7.6 0.00016 35.7 7.3 43 362-404 7-49 (74)
278 TIGR03752 conj_TIGR03752 integ 80.0 13 0.00029 44.8 11.1 78 359-436 61-139 (472)
279 PF03148 Tektin: Tektin family 79.9 1.3E+02 0.0029 35.4 32.8 96 182-280 61-156 (384)
280 PRK04325 hypothetical protein; 79.1 10 0.00022 34.8 7.8 54 352-405 4-57 (74)
281 KOG4603 TBP-1 interacting prot 79.1 26 0.00057 37.3 11.6 66 353-418 82-149 (201)
282 PF11932 DUF3450: Protein of u 78.9 44 0.00094 36.9 14.1 70 375-444 39-108 (251)
283 PF14197 Cep57_CLD_2: Centroso 78.9 16 0.00035 33.3 8.8 62 356-417 4-65 (69)
284 PF07106 TBPIP: Tat binding pr 78.6 11 0.00025 38.9 9.1 54 352-405 74-129 (169)
285 PF05266 DUF724: Protein of un 78.6 96 0.0021 33.5 16.1 36 410-445 149-184 (190)
286 KOG1962 B-cell receptor-associ 78.3 27 0.00059 38.4 12.0 63 397-459 149-211 (216)
287 KOG1899 LAR transmembrane tyro 78.1 96 0.0021 38.9 17.3 29 200-228 105-133 (861)
288 PF06120 Phage_HK97_TLTM: Tail 78.0 55 0.0012 37.7 14.8 52 330-390 56-107 (301)
289 KOG0249 LAR-interacting protei 77.9 39 0.00085 42.7 14.3 220 176-405 33-257 (916)
290 KOG0239 Kinesin (KAR3 subfamil 77.9 1E+02 0.0022 39.3 18.3 89 365-457 228-316 (670)
291 PF05377 FlaC_arch: Flagella a 77.9 5.9 0.00013 34.8 5.5 37 359-395 2-38 (55)
292 PRK00736 hypothetical protein; 77.7 9.4 0.0002 34.6 7.0 41 364-404 5-45 (68)
293 PF10481 CENP-F_N: Cenp-F N-te 77.2 42 0.00092 38.1 13.2 74 380-453 41-114 (307)
294 PF13747 DUF4164: Domain of un 77.0 41 0.00089 32.1 11.4 48 395-442 35-82 (89)
295 PF10498 IFT57: Intra-flagella 76.6 1.2E+02 0.0027 35.7 17.5 117 178-296 198-322 (359)
296 PF02403 Seryl_tRNA_N: Seryl-t 76.4 20 0.00044 34.3 9.5 71 361-435 26-96 (108)
297 PRK03947 prefoldin subunit alp 76.0 81 0.0018 31.6 14.0 104 177-290 5-137 (140)
298 PF10805 DUF2730: Protein of u 75.9 16 0.00036 35.5 8.7 54 351-404 36-91 (106)
299 PF08172 CASP_C: CASP C termin 75.8 17 0.00038 40.5 9.9 94 360-453 2-133 (248)
300 PF10481 CENP-F_N: Cenp-F N-te 75.6 1.6E+02 0.0034 33.8 18.5 124 168-292 9-133 (307)
301 PRK10929 putative mechanosensi 75.5 3.1E+02 0.0066 37.1 28.8 116 175-293 113-233 (1109)
302 PLN03188 kinesin-12 family pro 75.3 3.2E+02 0.0069 37.3 23.7 78 368-445 1069-1146(1320)
303 PRK00846 hypothetical protein; 75.0 12 0.00027 34.9 7.2 42 361-402 10-51 (77)
304 PRK00846 hypothetical protein; 74.8 14 0.0003 34.5 7.5 57 349-405 5-61 (77)
305 PLN02939 transferase, transfer 74.0 3.1E+02 0.0067 36.5 28.9 44 360-403 296-342 (977)
306 PRK00295 hypothetical protein; 73.7 17 0.00036 33.0 7.6 50 355-404 3-52 (68)
307 COG3074 Uncharacterized protei 73.7 31 0.00066 31.9 9.1 59 369-427 9-67 (79)
308 PRK00736 hypothetical protein; 73.5 16 0.00034 33.2 7.3 50 355-404 3-52 (68)
309 PF12329 TMF_DNA_bd: TATA elem 73.3 21 0.00046 32.8 8.3 29 357-385 12-40 (74)
310 KOG0804 Cytoplasmic Zn-finger 72.6 78 0.0017 38.3 14.5 64 359-422 363-426 (493)
311 PF07798 DUF1640: Protein of u 72.5 87 0.0019 33.0 13.7 20 373-392 75-94 (177)
312 PF04871 Uso1_p115_C: Uso1 / p 72.3 92 0.002 31.8 13.3 27 433-459 83-109 (136)
313 PF12777 MT: Microtubule-bindi 71.9 9.1 0.0002 44.1 6.9 41 169-209 5-46 (344)
314 KOG4302 Microtubule-associated 71.8 2.9E+02 0.0063 35.3 24.7 97 358-460 227-331 (660)
315 PF15066 CAGE1: Cancer-associa 71.7 83 0.0018 38.2 14.4 90 362-455 343-432 (527)
316 PF06818 Fez1: Fez1; InterPro 71.6 1.2E+02 0.0026 33.3 14.6 77 328-411 30-106 (202)
317 KOG4809 Rab6 GTPase-interactin 70.8 2.8E+02 0.006 34.6 22.9 72 328-399 420-499 (654)
318 COG1382 GimC Prefoldin, chaper 70.6 1E+02 0.0022 31.2 12.8 93 360-453 9-110 (119)
319 KOG0804 Cytoplasmic Zn-finger 70.2 81 0.0018 38.1 13.9 65 357-421 354-418 (493)
320 TIGR02338 gimC_beta prefoldin, 70.0 1.1E+02 0.0024 29.7 12.9 91 359-453 5-107 (110)
321 PF06156 DUF972: Protein of un 69.7 19 0.00041 35.4 7.6 52 369-420 6-57 (107)
322 KOG0239 Kinesin (KAR3 subfamil 69.4 2.8E+02 0.0062 35.4 19.3 98 352-453 222-319 (670)
323 PF09304 Cortex-I_coil: Cortex 69.3 1.3E+02 0.0027 30.1 13.6 66 387-459 11-76 (107)
324 PF14197 Cep57_CLD_2: Centroso 69.2 51 0.0011 30.1 9.6 62 377-438 4-65 (69)
325 PF10234 Cluap1: Clusterin-ass 69.1 75 0.0016 36.1 12.9 72 351-422 170-241 (267)
326 PF15290 Syntaphilin: Golgi-lo 69.1 50 0.0011 37.7 11.4 81 203-289 79-166 (305)
327 PF10498 IFT57: Intra-flagella 68.9 2.2E+02 0.0048 33.6 17.2 11 35-45 71-81 (359)
328 PF03962 Mnd1: Mnd1 family; I 68.8 1E+02 0.0022 33.1 13.4 27 415-441 137-163 (188)
329 KOG2264 Exostosin EXT1L [Signa 68.6 26 0.00057 43.0 9.7 70 387-456 81-150 (907)
330 KOG4809 Rab6 GTPase-interactin 68.5 3.1E+02 0.0067 34.3 26.8 102 187-294 333-440 (654)
331 PF14073 Cep57_CLD: Centrosome 67.4 1.1E+02 0.0023 33.0 12.9 89 366-458 59-151 (178)
332 PF10805 DUF2730: Protein of u 67.4 43 0.00092 32.7 9.4 64 377-440 34-99 (106)
333 PF13874 Nup54: Nucleoporin co 67.3 30 0.00065 35.2 8.7 93 368-460 34-126 (141)
334 cd00632 Prefoldin_beta Prefold 66.7 1.1E+02 0.0023 29.6 11.9 41 413-453 63-103 (105)
335 TIGR02231 conserved hypothetic 66.4 42 0.0009 40.8 11.2 30 351-380 72-101 (525)
336 PF05276 SH3BP5: SH3 domain-bi 66.3 2.3E+02 0.0049 31.9 28.8 104 357-460 121-224 (239)
337 COG1382 GimC Prefoldin, chaper 66.0 1.6E+02 0.0034 29.9 13.2 34 180-213 8-41 (119)
338 PF05546 She9_MDM33: She9 / Md 65.8 1.9E+02 0.0042 31.8 14.7 51 178-228 32-82 (207)
339 KOG1850 Myosin-like coiled-coi 65.7 2.7E+02 0.0059 32.6 25.7 202 248-459 110-331 (391)
340 KOG3850 Predicted membrane pro 65.6 1.9E+02 0.0041 34.5 15.4 93 169-264 258-370 (455)
341 PF05010 TACC: Transforming ac 64.8 2.2E+02 0.0048 31.3 24.3 29 264-292 65-93 (207)
342 COG2900 SlyX Uncharacterized p 64.6 28 0.00061 32.3 7.0 45 361-405 5-49 (72)
343 PF10267 Tmemb_cc2: Predicted 63.9 3.2E+02 0.007 32.8 18.9 30 173-202 214-243 (395)
344 cd00890 Prefoldin Prefoldin is 63.9 82 0.0018 30.6 10.8 39 247-285 87-125 (129)
345 COG1730 GIM5 Predicted prefold 63.3 2E+02 0.0042 30.1 13.8 47 244-290 91-137 (145)
346 KOG0993 Rab5 GTPase effector R 63.0 1.1E+02 0.0024 36.6 13.0 93 367-459 88-187 (542)
347 PF03962 Mnd1: Mnd1 family; I 62.2 1.9E+02 0.0041 31.1 13.9 29 263-291 137-165 (188)
348 PF07439 DUF1515: Protein of u 62.0 20 0.00043 35.5 5.9 60 329-391 15-74 (112)
349 PF15294 Leu_zip: Leucine zipp 61.9 1.1E+02 0.0024 35.0 12.5 106 178-297 132-237 (278)
350 KOG3215 Uncharacterized conser 61.8 2.6E+02 0.0056 31.0 15.4 176 230-454 8-191 (222)
351 PF06818 Fez1: Fez1; InterPro 61.7 2.5E+02 0.0055 30.8 21.2 97 178-294 10-106 (202)
352 PF05377 FlaC_arch: Flagella a 61.7 24 0.00052 31.2 5.8 37 365-401 1-37 (55)
353 PRK13169 DNA replication intia 61.5 34 0.00074 34.0 7.6 51 368-418 5-55 (110)
354 PF15233 SYCE1: Synaptonemal c 61.2 2E+02 0.0044 29.6 13.3 60 357-416 6-65 (134)
355 PF06248 Zw10: Centromere/kine 61.2 2.2E+02 0.0047 35.4 16.2 20 704-723 366-385 (593)
356 cd00632 Prefoldin_beta Prefold 61.1 1.6E+02 0.0035 28.4 14.1 37 255-291 64-100 (105)
357 PF02994 Transposase_22: L1 tr 60.7 21 0.00045 41.9 7.0 7 688-694 346-352 (370)
358 PF15456 Uds1: Up-regulated Du 60.2 1E+02 0.0022 31.2 10.8 90 178-277 22-111 (124)
359 PF07889 DUF1664: Protein of u 60.1 1.8E+02 0.0039 29.7 12.5 36 418-453 87-122 (126)
360 PF02403 Seryl_tRNA_N: Seryl-t 59.9 94 0.002 29.8 10.2 21 367-387 39-59 (108)
361 PRK09343 prefoldin subunit bet 59.7 1.9E+02 0.0042 28.9 14.1 105 354-458 4-116 (121)
362 TIGR02338 gimC_beta prefoldin, 59.7 1.8E+02 0.0038 28.4 14.1 13 207-219 25-37 (110)
363 PRK09841 cryptic autophosphory 59.6 4.2E+02 0.0091 33.9 18.5 33 260-292 266-298 (726)
364 KOG1962 B-cell receptor-associ 59.4 69 0.0015 35.3 10.1 61 369-429 149-209 (216)
365 KOG0288 WD40 repeat protein Ti 59.3 1.3E+02 0.0028 36.2 12.8 61 357-417 13-73 (459)
366 PF05278 PEARLI-4: Arabidopsis 59.0 70 0.0015 36.4 10.3 61 373-433 195-255 (269)
367 KOG4807 F-actin binding protei 58.6 4E+02 0.0086 32.1 23.1 64 393-459 513-576 (593)
368 COG2900 SlyX Uncharacterized p 58.6 57 0.0012 30.3 7.8 55 352-406 3-57 (72)
369 PF01920 Prefoldin_2: Prefoldi 58.5 1.4E+02 0.0031 27.9 11.1 86 361-450 2-99 (106)
370 TIGR01010 BexC_CtrB_KpsE polys 58.3 1.8E+02 0.004 33.5 14.0 91 197-291 168-265 (362)
371 KOG4438 Centromere-associated 58.3 4.2E+02 0.009 32.2 29.1 172 58-294 122-295 (446)
372 PF06632 XRCC4: DNA double-str 58.2 1.2E+02 0.0025 35.8 12.3 52 354-405 127-178 (342)
373 PF05700 BCAS2: Breast carcino 58.0 2.9E+02 0.0062 30.3 18.9 81 206-295 136-216 (221)
374 KOG0288 WD40 repeat protein Ti 57.9 1.8E+02 0.0039 35.1 13.6 55 354-408 17-71 (459)
375 PRK14139 heat shock protein Gr 57.9 1.8E+02 0.004 31.4 12.8 51 174-224 28-78 (185)
376 PF13747 DUF4164: Domain of un 57.8 1.6E+02 0.0034 28.2 11.1 20 209-228 35-54 (89)
377 PF06120 Phage_HK97_TLTM: Tail 57.3 1.7E+02 0.0038 33.8 13.3 87 351-437 82-172 (301)
378 KOG1853 LIS1-interacting prote 56.9 3.5E+02 0.0075 30.9 19.4 20 351-370 134-153 (333)
379 PRK09841 cryptic autophosphory 56.7 2.2E+02 0.0048 36.3 15.5 38 258-295 257-294 (726)
380 PF08826 DMPK_coil: DMPK coile 56.7 57 0.0012 29.4 7.4 41 188-228 14-54 (61)
381 PF15290 Syntaphilin: Golgi-lo 56.2 1.3E+02 0.0028 34.5 11.7 92 355-460 73-168 (305)
382 KOG2129 Uncharacterized conser 55.5 2.8E+02 0.0062 33.5 14.6 168 236-423 46-225 (552)
383 PF10211 Ax_dynein_light: Axon 55.2 1.6E+02 0.0035 31.6 11.9 8 178-185 33-40 (189)
384 PF04880 NUDE_C: NUDE protein, 55.2 15 0.00032 38.8 4.2 22 352-373 2-23 (166)
385 PF07200 Mod_r: Modifier of ru 55.2 1.3E+02 0.0029 30.4 10.9 53 352-404 29-81 (150)
386 cd00584 Prefoldin_alpha Prefol 54.7 1.9E+02 0.0041 28.5 11.7 42 245-286 85-126 (129)
387 PRK11519 tyrosine kinase; Prov 54.7 1.7E+02 0.0037 37.3 14.0 15 278-292 270-284 (719)
388 PF12761 End3: Actin cytoskele 54.4 1.4E+02 0.0031 32.5 11.3 25 379-403 97-121 (195)
389 cd00890 Prefoldin Prefoldin is 53.1 1.7E+02 0.0036 28.5 10.9 43 411-453 85-127 (129)
390 PF01442 Apolipoprotein: Apoli 53.0 2.6E+02 0.0055 28.2 24.6 19 207-225 6-24 (202)
391 PF10267 Tmemb_cc2: Predicted 52.9 2.7E+02 0.0059 33.4 14.3 101 178-295 212-318 (395)
392 PHA03011 hypothetical protein; 52.6 22 0.00047 34.8 4.5 63 328-397 56-118 (120)
393 KOG4571 Activating transcripti 52.6 38 0.00082 38.7 7.0 47 389-435 245-291 (294)
394 PF05008 V-SNARE: Vesicle tran 52.6 1.2E+02 0.0026 27.4 9.1 56 374-429 21-77 (79)
395 PRK09343 prefoldin subunit bet 52.2 2.6E+02 0.0056 28.0 15.5 41 248-288 72-112 (121)
396 PF07798 DUF1640: Protein of u 51.6 3.2E+02 0.0068 28.9 14.8 21 367-387 47-67 (177)
397 PF08647 BRE1: BRE1 E3 ubiquit 51.4 2.3E+02 0.005 27.2 12.4 21 421-441 46-66 (96)
398 TIGR00998 8a0101 efflux pump m 51.2 4E+02 0.0087 30.0 16.7 85 174-261 83-167 (334)
399 TIGR02231 conserved hypothetic 50.9 1.7E+02 0.0037 35.6 12.8 13 440-452 158-170 (525)
400 PRK10476 multidrug resistance 50.8 4.3E+02 0.0094 30.2 16.7 59 175-233 90-148 (346)
401 smart00502 BBC B-Box C-termina 50.8 2.2E+02 0.0048 26.8 14.8 28 431-458 76-103 (127)
402 PF13094 CENP-Q: CENP-Q, a CEN 50.7 2E+02 0.0044 29.6 11.5 66 198-276 19-84 (160)
403 TIGR01010 BexC_CtrB_KpsE polys 50.4 4.6E+02 0.0099 30.4 18.0 32 263-294 172-203 (362)
404 PF09738 DUF2051: Double stran 50.3 99 0.0022 35.7 10.0 32 367-398 101-132 (302)
405 KOG2991 Splicing regulator [RN 50.3 4.4E+02 0.0096 30.2 22.7 60 362-421 234-293 (330)
406 PF13094 CENP-Q: CENP-Q, a CEN 50.1 89 0.0019 32.2 8.8 46 359-404 22-67 (160)
407 PF06705 SF-assemblin: SF-asse 49.9 3.9E+02 0.0085 29.5 28.7 102 178-291 5-108 (247)
408 TIGR02449 conserved hypothetic 49.8 1.1E+02 0.0024 27.9 8.2 30 375-404 11-40 (65)
409 PRK05431 seryl-tRNA synthetase 49.7 93 0.002 37.2 10.1 34 363-396 27-60 (425)
410 PRK12704 phosphodiesterase; Pr 49.7 6E+02 0.013 31.5 18.0 24 704-727 436-459 (520)
411 PRK14011 prefoldin subunit alp 49.6 3.2E+02 0.007 28.4 13.0 39 245-283 86-124 (144)
412 PF06705 SF-assemblin: SF-asse 49.4 4E+02 0.0087 29.4 26.2 69 328-402 69-138 (247)
413 COG3352 FlaC Putative archaeal 49.2 1E+02 0.0023 32.4 8.9 81 328-408 50-138 (157)
414 PF13874 Nup54: Nucleoporin co 49.1 86 0.0019 31.9 8.4 90 362-451 35-124 (141)
415 PF00015 MCPsignal: Methyl-acc 49.0 3.2E+02 0.007 28.2 20.4 6 359-364 123-128 (213)
416 PF05529 Bap31: B-cell recepto 48.6 1.1E+02 0.0023 32.4 9.4 26 411-436 159-184 (192)
417 PF08657 DASH_Spc34: DASH comp 48.5 56 0.0012 36.8 7.6 55 351-405 181-259 (259)
418 PF11180 DUF2968: Protein of u 48.5 2.6E+02 0.0056 30.6 12.0 78 358-435 106-183 (192)
419 KOG3091 Nuclear pore complex, 47.9 6.4E+02 0.014 31.3 16.3 60 235-294 336-395 (508)
420 PRK11519 tyrosine kinase; Prov 47.8 4.5E+02 0.0098 33.6 16.2 30 263-292 269-298 (719)
421 PF04728 LPP: Lipoprotein leuc 47.7 1.2E+02 0.0026 27.1 7.8 30 378-407 3-32 (56)
422 PLN02678 seryl-tRNA synthetase 47.6 1.1E+02 0.0024 37.1 10.2 60 362-425 31-90 (448)
423 PF04977 DivIC: Septum formati 47.1 65 0.0014 28.7 6.5 38 375-412 21-58 (80)
424 PF05837 CENP-H: Centromere pr 46.9 2.8E+02 0.006 27.2 11.1 75 359-434 5-79 (106)
425 PRK14154 heat shock protein Gr 46.7 3.8E+02 0.0083 29.6 13.2 96 178-291 52-150 (208)
426 PF14712 Snapin_Pallidin: Snap 46.6 2.5E+02 0.0053 26.2 10.6 24 420-443 64-87 (92)
427 smart00502 BBC B-Box C-termina 46.6 2.6E+02 0.0056 26.4 12.0 24 411-434 77-100 (127)
428 PF06156 DUF972: Protein of un 46.1 68 0.0015 31.7 6.8 49 351-399 9-57 (107)
429 TIGR03319 YmdA_YtgF conserved 45.8 3.4E+02 0.0074 33.6 14.2 13 308-320 138-150 (514)
430 COG0497 RecN ATPase involved i 45.7 7.2E+02 0.016 31.3 24.7 30 199-228 157-186 (557)
431 PF02994 Transposase_22: L1 tr 45.7 52 0.0011 38.7 7.1 22 384-405 143-164 (370)
432 PRK05771 V-type ATP synthase s 45.4 1.3E+02 0.0029 37.7 10.9 18 822-839 441-458 (646)
433 PRK14147 heat shock protein Gr 45.4 3.3E+02 0.0072 29.0 12.3 39 179-217 19-57 (172)
434 TIGR01069 mutS2 MutS2 family p 45.2 2.8E+02 0.0061 35.9 13.9 7 227-233 409-415 (771)
435 TIGR03794 NHPM_micro_HlyD NHPM 45.2 5.2E+02 0.011 30.5 15.3 25 268-292 227-251 (421)
436 PF09738 DUF2051: Double stran 45.1 2.4E+02 0.0052 32.7 12.0 22 383-404 110-131 (302)
437 PF15397 DUF4618: Domain of un 45.0 5.2E+02 0.011 29.5 22.8 30 383-412 191-220 (258)
438 PF04100 Vps53_N: Vps53-like, 45.0 6E+02 0.013 30.2 16.3 131 328-460 31-176 (383)
439 TIGR02449 conserved hypothetic 45.0 1.6E+02 0.0035 26.9 8.4 57 387-443 2-58 (65)
440 PF10211 Ax_dynein_light: Axon 44.8 4.3E+02 0.0093 28.4 14.0 28 377-404 126-153 (189)
441 PF03999 MAP65_ASE1: Microtubu 44.5 98 0.0021 38.7 9.6 153 177-344 141-301 (619)
442 PF06248 Zw10: Centromere/kine 44.3 5E+02 0.011 32.3 15.5 22 706-727 338-359 (593)
443 PRK00409 recombination and DNA 44.2 4.4E+02 0.0095 34.3 15.4 16 71-86 276-291 (782)
444 PRK14153 heat shock protein Gr 44.1 3.9E+02 0.0084 29.2 12.7 54 165-218 15-73 (194)
445 KOG4421 Uncharacterized conser 43.6 6.5E+02 0.014 30.2 15.4 151 102-290 450-631 (637)
446 PF11180 DUF2968: Protein of u 43.4 4.8E+02 0.01 28.6 13.1 35 262-296 148-182 (192)
447 PRK12704 phosphodiesterase; Pr 43.3 4.9E+02 0.011 32.3 15.0 7 656-662 245-251 (520)
448 KOG2751 Beclin-like protein [S 43.3 2.8E+02 0.0061 33.6 12.3 79 379-457 177-255 (447)
449 PF05103 DivIVA: DivIVA protei 42.9 15 0.00032 35.9 1.9 54 168-221 15-68 (131)
450 PF10205 KLRAQ: Predicted coil 42.9 3E+02 0.0065 27.3 10.5 42 410-451 30-71 (102)
451 TIGR00293 prefoldin, archaeal 42.7 3E+02 0.0064 27.1 10.9 34 413-446 86-119 (126)
452 KOG3647 Predicted coiled-coil 42.7 5E+02 0.011 29.9 13.5 103 355-457 117-223 (338)
453 KOG4302 Microtubule-associated 42.6 8.6E+02 0.019 31.3 22.3 36 261-296 54-89 (660)
454 COG1730 GIM5 Predicted prefold 42.4 3E+02 0.0065 28.8 11.1 97 357-454 6-135 (145)
455 PRK14143 heat shock protein Gr 42.3 5.1E+02 0.011 29.1 13.6 48 178-225 67-114 (238)
456 KOG0998 Synaptic vesicle prote 42.0 50 0.0011 42.9 6.7 83 353-435 480-562 (847)
457 PF09486 HrpB7: Bacterial type 41.9 4.5E+02 0.0098 27.9 13.1 114 180-299 10-124 (158)
458 TIGR02894 DNA_bind_RsfA transc 41.8 2.2E+02 0.0047 30.4 10.0 51 378-428 104-154 (161)
459 PF04642 DUF601: Protein of un 41.2 1.7E+02 0.0037 33.2 9.6 96 186-281 187-293 (311)
460 PF15456 Uds1: Up-regulated Du 41.0 3.2E+02 0.0069 27.8 10.8 29 417-445 78-106 (124)
461 KOG4460 Nuclear pore complex, 41.0 5.5E+02 0.012 32.3 14.3 158 234-422 582-739 (741)
462 PF04871 Uso1_p115_C: Uso1 / p 40.8 4.2E+02 0.0091 27.2 13.8 86 367-459 30-116 (136)
463 PF04065 Not3: Not1 N-terminal 40.7 5.7E+02 0.012 28.7 14.9 27 189-215 5-31 (233)
464 PRK14145 heat shock protein Gr 40.6 5.3E+02 0.011 28.3 13.3 96 177-291 44-139 (196)
465 TIGR02894 DNA_bind_RsfA transc 40.5 2.3E+02 0.005 30.1 10.0 62 373-434 92-153 (161)
466 PF01920 Prefoldin_2: Prefoldi 40.4 3.1E+02 0.0068 25.6 12.9 23 196-218 9-31 (106)
467 PF13805 Pil1: Eisosome compon 40.2 4.2E+02 0.0092 30.4 12.7 96 330-440 97-192 (271)
468 KOG3091 Nuclear pore complex, 39.7 1.5E+02 0.0032 36.4 9.5 111 332-453 337-447 (508)
469 PRK00409 recombination and DNA 39.6 7E+02 0.015 32.5 16.2 44 355-398 518-561 (782)
470 PF14282 FlxA: FlxA-like prote 39.1 2E+02 0.0043 28.1 8.9 54 208-263 21-74 (106)
471 TIGR00293 prefoldin, archaeal 39.1 2.5E+02 0.0053 27.6 9.7 37 246-282 85-121 (126)
472 KOG4657 Uncharacterized conser 38.8 6.2E+02 0.013 28.5 13.4 77 355-431 49-125 (246)
473 PF09744 Jnk-SapK_ap_N: JNK_SA 38.8 5E+02 0.011 27.5 13.4 51 177-227 49-103 (158)
474 PF14389 Lzipper-MIP1: Leucine 38.8 84 0.0018 29.9 6.0 73 213-291 8-84 (88)
475 PRK10803 tol-pal system protei 38.4 1.5E+02 0.0032 33.3 8.9 41 385-425 54-94 (263)
476 PRK13169 DNA replication intia 38.3 1.1E+02 0.0023 30.6 6.9 47 351-397 9-55 (110)
477 KOG1760 Molecular chaperone Pr 38.2 4.3E+02 0.0092 27.2 10.9 81 360-443 19-122 (131)
478 PF07989 Microtub_assoc: Micro 38.1 1.6E+02 0.0034 27.4 7.5 64 394-457 2-66 (75)
479 TIGR00414 serS seryl-tRNA synt 38.0 1.9E+02 0.0041 34.6 10.2 35 362-396 28-62 (418)
480 COG0216 PrfA Protein chain rel 37.2 2.2E+02 0.0047 33.7 10.0 92 197-298 5-106 (363)
481 PRK13729 conjugal transfer pil 37.0 1.1E+02 0.0024 37.4 8.0 17 819-835 373-389 (475)
482 PF05529 Bap31: B-cell recepto 36.8 1.5E+02 0.0033 31.3 8.3 6 409-414 178-183 (192)
483 PF05103 DivIVA: DivIVA protei 36.6 21 0.00045 34.9 1.8 43 357-399 25-67 (131)
484 PF02050 FliJ: Flagellar FliJ 36.5 3.5E+02 0.0076 25.0 14.4 40 391-430 58-97 (123)
485 PF14817 HAUS5: HAUS augmin-li 36.5 3.3E+02 0.0071 34.7 12.2 84 371-458 79-162 (632)
486 TIGR03495 phage_LysB phage lys 36.3 3.7E+02 0.0079 27.9 10.5 46 419-464 60-105 (135)
487 PF04645 DUF603: Protein of un 36.3 98 0.0021 33.1 6.6 59 345-412 100-158 (181)
488 PRK13729 conjugal transfer pil 36.1 1.1E+02 0.0023 37.5 7.7 16 406-421 97-112 (475)
489 KOG4603 TBP-1 interacting prot 36.0 2.6E+02 0.0055 30.3 9.5 23 256-278 118-140 (201)
490 PF07227 DUF1423: Protein of u 35.8 5.8E+02 0.013 31.3 13.5 128 195-390 318-445 (446)
491 PF06810 Phage_GP20: Phage min 35.6 4.4E+02 0.0096 27.6 11.2 86 360-446 2-94 (155)
492 PF06810 Phage_GP20: Phage min 35.5 2.1E+02 0.0046 29.9 8.9 65 352-416 15-82 (155)
493 PF14988 DUF4515: Domain of un 35.5 6.3E+02 0.014 27.7 23.4 199 194-428 6-206 (206)
494 COG3206 GumC Uncharacterized p 35.5 8.5E+02 0.019 29.2 18.4 213 188-442 184-402 (458)
495 PF07989 Microtub_assoc: Micro 35.4 2.8E+02 0.006 25.9 8.7 73 351-423 1-74 (75)
496 PF10234 Cluap1: Clusterin-ass 35.4 7.4E+02 0.016 28.4 17.0 132 319-457 117-255 (267)
497 KOG0244 Kinesin-like protein [ 35.2 7.9E+02 0.017 32.7 15.2 260 174-460 299-567 (913)
498 PF15188 CCDC-167: Coiled-coil 35.2 1.5E+02 0.0032 28.5 7.0 56 355-410 3-68 (85)
499 TIGR03752 conj_TIGR03752 integ 35.2 3E+02 0.0065 33.8 11.1 78 380-457 61-139 (472)
500 PF05565 Sipho_Gp157: Siphovir 34.9 3.5E+02 0.0077 28.2 10.5 87 197-292 6-92 (162)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=100.00 E-value=4.4e-39 Score=283.97 Aligned_cols=74 Identities=80% Similarity=1.330 Sum_probs=73.5
Q ss_pred ccccccCCCCCCchHHHHhHHHHHHHHHHHHHHhhhcCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 001620 11 SWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYD 84 (1043)
Q Consensus 11 ~ww~~shi~~~~s~wL~~~l~dmd~kvk~~l~li~ed~dsfakraemyy~kRpeLi~~vee~~r~Yr~Laeryd 84 (1043)
||||+|||+|++||||++||+|||.|||.||+||++||||||+||||||++||+||++||||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.05 E-value=9.7e-08 Score=120.17 Aligned_cols=263 Identities=17% Similarity=0.246 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.++..|+..+..++.+...+...+..+...+..++.++..++.++..++.. +.....+...+...+..++..+.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~e~~ 750 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ------ISALRKDLARLEAEVEQLEERIA 750 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666555555444 44444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK 337 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k 337 (1043)
.++.....+..++..+..++..++.++..+...+..+....... -..+..+...+..+ ..++..+..+
T Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~---~~~~~~~~~~ 818 (1179)
T TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL---------KEELKALREALDEL---RAELTLLNEE 818 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 55555555555555555555555555555544443322111110 01111122222222 2222222222
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 001620 338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417 (1043)
Q Consensus 338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE 417 (1043)
+..+..........+.++..+++.+..++..++..+......+..+...++++...+..++..+..+......+..++.+
T Consensus 819 l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 898 (1179)
T TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211112223344555555555555555555555555555555555556666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 418 MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 418 lEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
++.++..++.....+..++..++..+..+...++++...+.
T Consensus 899 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655543
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.02 E-value=1.5e-07 Score=119.01 Aligned_cols=111 Identities=17% Similarity=0.284 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.++..|..++..|+.+.+.+...+..+...+..++..+..+...+..++.+ +.....+...+...+..+...+.
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~------l~~~~~~l~~~~~~~~~l~~~~~ 747 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE------IEQLEQEEEKLKERLEELEEDLS 747 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777776666666666555 44444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.++..+.....++..+..++..+..++..+..++..+
T Consensus 748 ~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l 784 (1164)
T TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555444
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.97 E-value=2.9e-07 Score=116.43 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 001620 176 GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRET 255 (1043)
Q Consensus 176 Ae~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEt 255 (1043)
...++..|+..+..++.+...+...+..+...+..++..+..+..++..++.+ ++....+...+...+..++..
T Consensus 679 l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~------l~~~~~~~~~l~~~~~~~~~~ 752 (1164)
T TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLEQE 752 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33777777777777777777777777777777777777777777666666655 555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
+..++.++..+..++..+..++..++.++..+...+
T Consensus 753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~ 788 (1164)
T TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666665544
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.96 E-value=2.8e-07 Score=118.45 Aligned_cols=273 Identities=19% Similarity=0.311 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001620 179 EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQ 258 (1043)
Q Consensus 179 EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~e 258 (1043)
++..|..++..++...+.+..........+..++..+.++...+..+... ++........+..+++.....+..
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ------LEELKRELAALEEELEQLQSRLEE 741 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444444444444444444443 333333333444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620 259 MEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI 338 (1043)
Q Consensus 259 LEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI 338 (1043)
|+.++..+.++...+..++..++..+..+...+..++...+.....-+. ....+..++..+..+ +.++..+...+
T Consensus 742 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~ 816 (1163)
T COG1196 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA--LQEELEELEEELEEA---ERRLDALEREL 816 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5555555444444444444444444444444443332222220000000 002333333333333 35677777777
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620 339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418 (1043)
Q Consensus 339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl 418 (1043)
+............+..+.+++..+..++..++..+...+..+..+..++++++..+..++..+..++..+.++..+++++
T Consensus 817 ~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~ 896 (1163)
T COG1196 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620 419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT 462 (1043)
Q Consensus 419 Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~ 462 (1043)
+.++..+...++......+.+..+...+...+..+...+....+
T Consensus 897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 940 (1163)
T COG1196 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999888888888888888777776544
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.94 E-value=4.1e-07 Score=114.56 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.++..|..++..|+.+.+.+...+..+...+..++.++..++.++..++.+ +.....+...+...+...+..+.
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 743 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE------LEELSRQISALRKDLARLEAEVE 743 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777766666555 44344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
.|+.++..+..+...+..++..++..+..+...+
T Consensus 744 ~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 777 (1179)
T TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.79 E-value=1.6e-06 Score=108.09 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
.++.++|..+..++.+++..+.... .+..+..++.++...+..++.++..|...+..+.+++.+++.++.++
T Consensus 568 ~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 568 EEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 34444444444445555555444444444444555454444444443
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=1.4e-05 Score=99.84 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
+..|+..+..+.++...+...++.....+..++..+..++.++..+..+
T Consensus 323 ~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~ 371 (880)
T PRK02224 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444555555555555555555544444
No 9
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.67 E-value=2.4e-05 Score=84.41 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=60.7
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
.++.+.+..+|..|+..+......+..|..--+....++..+++.+..|...-.........++.....++..+..++..
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~e 212 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDE 212 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555566666666666666666666
Q ss_pred HhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 436 NYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 436 ~~~L~srftEa~~~L~eLseeL~s 459 (1043)
+...+..+..+...|+..=..|++
T Consensus 213 L~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 213 LEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666666666666666555444443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.64 E-value=1.1e-05 Score=104.00 Aligned_cols=257 Identities=18% Similarity=0.259 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL 256 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL 256 (1043)
..+|..+...+..+..+...+......+...+.+++..+..+..++..+..+ +.....+...+...+..+.+.+
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~ 746 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE------LAALEEELEQLQSRLEELEEEL 746 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777776666666666666666555 4444444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhhHhhhhhh----HHHH
Q 001620 257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDIDVVRTAQD----REDL 331 (1043)
Q Consensus 257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee~~~l~eE----E~rL 331 (1043)
..|...+..+..++..+..++..+...+..|+..+..+........ ..+..+ ..+..+...+..+..+ ..+.
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1163)
T COG1196 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ---EELEELEEELEEAERRLDALERELESLEQRR 823 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444444444444444444444433321110000 000000 1112222222222211 2222
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 001620 332 ESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDL 411 (1043)
Q Consensus 332 e~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L 411 (1043)
+.+..+|..+..........+..+...+..+..++..+...+....+.+..+...+..++.....++.++..+......+
T Consensus 824 ~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332222233344444444444444445444554555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001620 412 SSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH 442 (1043)
Q Consensus 412 ~ekLkElEeel~evq~l~esVe~e~~~L~sr 442 (1043)
..++..+...+..+......+..++..+...
T Consensus 904 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 934 (1163)
T COG1196 904 KEEIEKLRERLEELEAKLERLEVELPELEEE 934 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555554444444444444444433333
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.60 E-value=2.2e-05 Score=103.64 Aligned_cols=210 Identities=18% Similarity=0.263 Sum_probs=134.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHH---------
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLM--------- 244 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~--------- 244 (1043)
.+|+....++......|+.+...+..++....++-..++.+...++.++..+... |+|.+.-..+
T Consensus 890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~------~~~~E~~~~k~~~Ek~~~e 963 (1930)
T KOG0161|consen 890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQ------LEELELTLQKLELEKNAAE 963 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888777666 5555554444
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchh
Q 001620 245 -----AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDI 319 (1043)
Q Consensus 245 -----aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLee 319 (1043)
+..++..|.+.+++|-.+.+...+..+.+...+...++++..|.+.+.+++..+++ ++.
T Consensus 964 ~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~----------------le~ 1027 (1930)
T KOG0161|consen 964 NKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDD----------------LEV 1027 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH
Confidence 44566667777777777777777777777777777777777777777777555444 221
Q ss_pred hHhhhhh---h-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620 320 DVVRTAQ---D-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR 395 (1043)
Q Consensus 320 e~~~l~e---E-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk 395 (1043)
...+-+. + +...+.+++.+..+.+ .+.++...++++.+.....+..++.....++.+...+..++..++
T Consensus 1028 ~le~e~~~r~e~Ek~~rkle~el~~~~e-------~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1028 TLEREKRIRMELEKAKRKLEGELKDLQE-------SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2111111 1 4444455555533332 446677777777777777777766666666666555555555555
Q ss_pred HHHHHHHHhhhchHHHH
Q 001620 396 TLEDDKASLINDKKDLS 412 (1043)
Q Consensus 396 eLEeEl~~Lk~dRe~L~ 412 (1043)
+|+..+..|.++-+..+
T Consensus 1101 eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1101 ELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444433333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=3.4e-05 Score=100.74 Aligned_cols=105 Identities=13% Similarity=0.198 Sum_probs=71.7
Q ss_pred cchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620 316 RSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR 395 (1043)
Q Consensus 316 eLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk 395 (1043)
.+..++..+...-..|..+...|..+...+ ....+.++...+..+...+..++..+...+..|..++.+++.++...+
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 938 KAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555777777888888777765 444567777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh--hhchHHHHHHHHHHHHHH
Q 001620 396 TLEDDKASL--INDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 396 eLEeEl~~L--k~dRe~L~ekLkElEeel 422 (1043)
.+.+.+.-+ ...-..+..+|..++...
T Consensus 1016 ~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 1016 WLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666 555555555555555444
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.54 E-value=3.8e-05 Score=95.80 Aligned_cols=232 Identities=15% Similarity=0.242 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-----------
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA----------- 246 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE----------- 246 (1043)
..++.+..-....-+-++.....+....+.+..+++++.++++.+..+.+ .++...+...+.
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-------~e~~~~~l~~Lk~k~~W~~V~~~ 279 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-------LEDLKENLEQLKAKMAWAWVNEV 279 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666777888888888888888888888888888876643 333333333222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh
Q 001620 247 -AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA 325 (1043)
Q Consensus 247 -~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~ 325 (1043)
.+|+-|.+.+...|++...+.+.+.....++..++.++.+++..++.+..+- +.+...+.
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~-------------------~~~d~Ei~ 340 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEV-------------------DAQDEEIE 340 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-------------------hhhhHHHH
Confidence 5788888888888888888888888888888888888887777776553322 22222222
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 326 QDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSF-SSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 326 eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~I-Ssqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
.....++.+..+.+++....-.++..|..+...++.|.-.|++++... -+.+.++...+.+++-|+..+..+++.+..|
T Consensus 341 ~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 341 EARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444444333333333344455555555555555555555555 4444555555555555555555555555555
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 405 INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 405 k~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
+.+...+.++++..++++..+++....++..
T Consensus 421 ~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 421 REELNEVKEKAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443333333
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.50 E-value=0.00013 Score=86.73 Aligned_cols=228 Identities=14% Similarity=0.187 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
..+..++.++..|+.+.+.+..++......+.+++.... ..+..++.+ ++........+..++...++.|.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e------~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNK------YDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444444444444444322 334455444 55555666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLES 333 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~ 333 (1043)
+|...+....+.+..+...+..++..+..+...+...+....-| .+. ..+......+..+... +.++..
T Consensus 245 ~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp-~C~------~~~~~~~~~~~~l~d~i~~l~~~l~~ 317 (562)
T PHA02562 245 NLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP-TCT------QQISEGPDRITKIKDKLKELQHSLEK 317 (562)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCC------CcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777666777777788888888888888887777665322221 111 2222223333333332 445555
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 001620 334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS 413 (1043)
Q Consensus 334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~e 413 (1043)
++..|.++..... .+.++..++.++.+++......|.+....+..++.+++.|+....++++++..|..+-.++..
T Consensus 318 l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 318 LDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 5555554433221 456666677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 001620 414 KLVEMEEKLLRL 425 (1043)
Q Consensus 414 kLkElEeel~ev 425 (1043)
.+.++..+....
T Consensus 394 ~~~~~~ke~~~~ 405 (562)
T PHA02562 394 TKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHH
Confidence 777776666554
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.46 E-value=8.8e-05 Score=80.16 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNR 430 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~e 430 (1043)
+|.+|.+.+..+-+.+.+|+.....+......+...|..|..++++.+.-..........|...+..++.++...+....
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHH
Q 001620 431 SVEDQ 435 (1043)
Q Consensus 431 sVe~e 435 (1043)
.+..+
T Consensus 222 ~~~~e 226 (237)
T PF00261_consen 222 KVQEE 226 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=0.00032 Score=87.99 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
..+..|++++..+....+.+..+...+.+++-.++..+.++..+++.+..+
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~ 828 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTAS 828 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHH
Confidence 789999999999999999999999999999999999888888877777665
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.40 E-value=0.00011 Score=97.36 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=43.2
Q ss_pred ccccchhhhhhhhhhhhhhhHHHHHhhhhHHHHHHHHHHHHHHhhhhhcCCC
Q 001620 938 YQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLS 989 (1043)
Q Consensus 938 yqAAKFQGEVlNMkQEnnkVa~ELqagld~v~~Lq~evek~l~kL~e~~~ls 989 (1043)
-.--|--++|.-++-+---+.+++.++-|+++..+.+..++-..|+.+=+-+
T Consensus 1716 ~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1716 AEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344667889999999999999999999999999999999998888665543
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.36 E-value=0.00022 Score=89.11 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 183 LQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 183 LqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L 225 (1043)
|...+..++.++..+...+..+..++.+++..+..+++.+..|
T Consensus 389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L 431 (880)
T PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555444333
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.00013 Score=91.15 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
.+..+..++.++..++..+...+....+.+..++..++++++.+..|.
T Consensus 385 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544443
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.34 E-value=0.0038 Score=69.32 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=37.1
Q ss_pred HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620 363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ 423 (1043)
..++.++...+......+...+.++.+++..+..|..++..|+.....|...+.+++..+.
T Consensus 194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 3455555556666666666666666666666666666666666666666666665554433
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.33 E-value=0.0011 Score=82.44 Aligned_cols=283 Identities=16% Similarity=0.210 Sum_probs=184.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---ccc--chhh--HHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFG---QGI--VIED--EEARTLMAA 246 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~---~~a--~IED--~eARal~aE 246 (1043)
..+.+.+.+|+.+...++.|.+-+...++....++..+...+..+++.|..|+.... .++ .-++ ...+...++
T Consensus 110 d~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e 189 (775)
T PF10174_consen 110 DKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAE 189 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHH
Confidence 556677888888888888888888888888888888888888888888888887541 111 0000 111222222
Q ss_pred HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccc
Q 001620 247 AALKSCRETLTQMEEEQE--------------------KSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDD 306 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere--------------------~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~ 306 (1043)
..+..++..+...+.... .+..-+..-..+|..++.-+..+..+|..|....+.+...-+
T Consensus 190 ~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~ 269 (775)
T PF10174_consen 190 ARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD 269 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 333333333333332221 112222223334444444444444454444443332111111
Q ss_pred ch-hhhc----ccccchhhHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhH
Q 001620 307 SV-KAVE----ESDRSDIDVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQT 377 (1043)
Q Consensus 307 ~l-e~iS----eIpeLeee~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqe 377 (1043)
.+ +.++ ...-+...++.+.-+ ..++..+..++..+.. .-.|+...|+-|..-+...+...+-.+
T Consensus 270 ~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~-------~~~d~r~hi~~lkesl~~ke~~~~~Lq 342 (775)
T PF10174_consen 270 RLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE-------QDSDMRQHIEVLKESLRAKEQEAEMLQ 342 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111 000111122222222 3445555555544443 347889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+.|++|+.++++.+..+.....-+..+..+...+..+|..+.+.++.....+..++..+.+|...+.+=...+..+...|
T Consensus 343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccCchh
Q 001620 458 KIQKTDE 464 (1043)
Q Consensus 458 ~s~~~~~ 464 (1043)
.+ .||.
T Consensus 423 ~~-~~d~ 428 (775)
T PF10174_consen 423 SS-QADS 428 (775)
T ss_pred hc-cccc
Confidence 87 5553
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=0.00025 Score=92.92 Aligned_cols=122 Identities=8% Similarity=0.187 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhh
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL--QAQIRTLEDDKASLI 405 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL--qeklkeLEeEl~~Lk 405 (1043)
...|..+..+|... ..++.++...++.+..++..+...|..++.....+...|.-+ +..+.+++.++..|.
T Consensus 969 ~~qL~~~e~el~~~-------~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 969 DDYLKQKETELNTV-------NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666654 335666777777777777777777777766666666666666 555555555555555
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 406 NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 406 ~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
.....+ ....+..++.++......+..+...+......+...|..|..+|.
T Consensus 1042 ~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1042 KEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444433 224444455555555555555555555555555666666655553
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.23 E-value=0.00056 Score=85.84 Aligned_cols=246 Identities=17% Similarity=0.292 Sum_probs=152.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 001620 192 TDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQ-----EKS 266 (1043)
Q Consensus 192 tEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeer-----e~s 266 (1043)
|..+-+...|..+.+.+......|....+.+..++.+ |.+.+.....+ ..++...+.+..|..+. -..
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~------i~e~~e~~~~~-~~~e~~~~~l~~Lk~k~~W~~V~~~ 279 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKK------IKEEEEKLDNL-EQLEDLKENLEQLKAKMAWAWVNEV 279 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888888888888888888888776 65444433221 22333334444444443 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHHHHHHHHHHH
Q 001620 267 AEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLESLREKIKEQL 342 (1043)
Q Consensus 267 ~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~Ld~kInEl~ 342 (1043)
..++......|...+.++..+...+.......... -.++.+.++++..+..+ ..+++.+...+..+.
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~---------r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~ 350 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEA---------RQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLR 350 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45555555555555555555555554332221110 02344455555555444 566666666666655
Q ss_pred hcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620 343 EFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET-DELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK 421 (1043)
Q Consensus 343 eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~El-eELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee 421 (1043)
.+. .++.++|-.+.|.+..+...+--...+|..++.++ ..+...+.+.++++..|..+.+++.+.+..|+++
T Consensus 351 re~-------~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 351 REV-------NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 56666777777777777777777777777776666 6667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 422 LLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 422 l~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
+..+.......+.+..+++.....+.-.|...+..|...
T Consensus 424 ~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 424 LNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777666666666666666665554
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.21 E-value=0.0015 Score=72.42 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 206 AKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFE 285 (1043)
Q Consensus 206 ekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ele 285 (1043)
..|.++-.+.+.++-++..+..+ +++...+..........++..|..|..........-..+..+|..+..++.
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e------~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEE------LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHhhHHhhhhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 33444444444444444444444 566666666666666666666666666666666666666666666666666
Q ss_pred HHHHh----hccccCCCC-CCCccccchhhhcccccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 001620 286 SLKHE----FIGNEGSKK-IPHVKDDSVKAVEESDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKI 359 (1043)
Q Consensus 286 sLk~e----l~~LEaeke-~~~l~~~~le~iSeIpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkI 359 (1043)
-++.. +..+..... ....... . ..-++|..-+..++.+ +..+......+... ....+.++...+
T Consensus 135 fl~~~heeEi~~L~~~~~~~~~~e~~---~-~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~------y~~k~~~l~~~~ 204 (312)
T PF00038_consen 135 FLKQNHEEEIEELREQIQSSVTVEVD---Q-FRSSDLSAALREIRAQYEEIAQKNREELEEW------YQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHHHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhccccccceeec---c-cccccchhhhhhHHHHHHHHHhhhhhhhhhh------cccccccccccc
Confidence 55543 333333321 0000000 0 1123344444455444 33333333333333 233456666666
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI----NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk----~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
......+..+...+......|..|+.+++.++.....|+..+..|. ..+..+...+..++.++..++..+.....+
T Consensus 205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 6666666677777777777777777777777777777776666553 455556677777777777777777766666
Q ss_pred HhhHHHHHHHHHHhHHHHHH
Q 001620 436 NYSFQTHLTEARYNIDHLSH 455 (1043)
Q Consensus 436 ~~~L~srftEa~~~L~eLse 455 (1043)
...|-..-..+..+|..-+.
T Consensus 285 y~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 285 YQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 66655555556666665543
No 25
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.20 E-value=0.006 Score=73.86 Aligned_cols=204 Identities=14% Similarity=0.198 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620 235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES 314 (1043)
Q Consensus 235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI 314 (1043)
++...+....+...|..|-+.|..-...+..+......+...+..++.....|..++..+... |.-
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s-------Y~l------- 342 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS-------YTL------- 342 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccc-------
Confidence 444445555555566666666666666666666666666666666666666666666655221 110
Q ss_pred ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620 315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI 394 (1043)
Q Consensus 315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl 394 (1043)
-+.++...+.-+.++..+...+......-......+.++.+..+.+..++..++.........|..|+..-.+.+.++
T Consensus 343 --~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 343 --NESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222223344444444443333333333345566666666666666666666666666665555555555555
Q ss_pred HHHHHHHHHhhh---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620 395 RTLEDDKASLIN---------DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 395 keLEeEl~~Lk~---------dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs 454 (1043)
..+...+..++. -+......+..+..++..+...++....-+.++...+.++...++.|.
T Consensus 421 ~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~ 489 (569)
T PRK04778 421 ERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE 489 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 555555444432 223333444444444444444443333333333333344444444443
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.18 E-value=0.00069 Score=80.55 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001620 197 VKSSYENWLAKYWDIEEQIKELQQRVYSLQ 226 (1043)
Q Consensus 197 l~sqyq~~lekl~eLE~qISeaQeeV~~LQ 226 (1043)
++..|+....++..++.++..++.++..++
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544443
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=98.07 E-value=0.0027 Score=80.14 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.4
Q ss_pred hhHHhhh
Q 001620 892 LTLWIEK 898 (1043)
Q Consensus 892 L~vWlE~ 898 (1043)
+.-||.+
T Consensus 741 ~r~~l~k 747 (895)
T PRK01156 741 LREAFDK 747 (895)
T ss_pred HHHHhhh
Confidence 4445554
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.002 Score=80.18 Aligned_cols=196 Identities=15% Similarity=0.240 Sum_probs=133.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620 235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES 314 (1043)
Q Consensus 235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI 314 (1043)
+++.+.++......++.|+++++.||..+.....+- ..|+.+++.+|+.+++.+.....+
T Consensus 750 v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~----------------- 809 (1174)
T KOG0933|consen 750 VEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKE----------------- 809 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 555666666666677777777777776665554332 245566666666666665433222
Q ss_pred ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620 315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI 394 (1043)
Q Consensus 315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl 394 (1043)
+...+.+.+.|..++.++..+..+..-....+...|+.+...+.+|+..|...+..++.+..++.+.++++
T Consensus 810 ---------~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~ 880 (1174)
T KOG0933|consen 810 ---------LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ 880 (1174)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 22225556666666666666666666667777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 395 RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 395 keLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
...-.++..+...-+.+..+....+-++..+...+.++..+..+......-+...++=|.++.+.
T Consensus 881 ~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~ 945 (1174)
T KOG0933|consen 881 RDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRL 945 (1174)
T ss_pred HhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHh
Confidence 88888887777777777777777777777777777777777777666666666666666544443
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.00 E-value=0.004 Score=74.72 Aligned_cols=274 Identities=14% Similarity=0.220 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cchhhHHHHHHHHH----HHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQG-IVIEDEEARTLMAA----AALKSC 252 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~-a~IED~eARal~aE----~aIksc 252 (1043)
.||.+|+.+...+-.+|+....+.+...........++.++..+|..+...+... +...+.+.+...+. ..+..|
T Consensus 137 ~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~ 216 (522)
T PF05701_consen 137 QELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW 216 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988888899999999988887774311 11111111111111 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhh----hcccccchhhHhhhhhhH
Q 001620 253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKA----VEESDRSDIDVVRTAQDR 328 (1043)
Q Consensus 253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~----iSeIpeLeee~~~l~eEE 328 (1043)
+..+.+-+.++..+..++ ..+..++.++......+..|..++...... .+.. -.....+...+..+ .
T Consensus 217 ~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~--~l~~~~~~~~~~~~~~~~l~s~---~ 287 (522)
T PF05701_consen 217 EKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKES--KLEEEAEAKEKSSELQSSLASA---K 287 (522)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHhhhhhhhHHHHHHHH---H
Confidence 444444444444444433 222333334443334443333332221000 0000 00001111111111 3
Q ss_pred HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620 329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR 408 (1043)
.+|......|.....+.......|.-|...++....-+..+..+.......|..|+.++...+..+..+...-...+...
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~ 367 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAM 367 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 33444444444333333333445555666666666666666666666666666666666666666666665555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
.+|...|.++..+....+.....++.+...++.....+...|......|..+
T Consensus 368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666777776677777777777777766666654
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.00 E-value=0.0062 Score=73.79 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHH----------HHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTAL----------VQRLRTETDELQAQIRTL 397 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~----------IerLr~EleELqeklkeL 397 (1043)
..+|..|...|......+.+.......+.+.+..+......|...+...... +..+..++.++.+....+
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~ 367 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555 556666666666666666
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 398 EDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 398 EeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
...+......-+.+...+.++.+++..+......+...+..|+.--.++...|..++..|+..
T Consensus 368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666677777777777777777777777777777777777777777777776643
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.0026 Score=80.34 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=64.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---------chhhHH-------HHHHHHHHHHHH
Q 001620 188 LTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI---------VIEDEE-------ARTLMAAAALKS 251 (1043)
Q Consensus 188 ~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a---------~IED~e-------ARal~aE~aIks 251 (1043)
.=|..|.+....+-..+.-.+.+...+|...+++...+....-..+ ..+.++ .|+..+.....+
T Consensus 309 ~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~ 388 (1293)
T KOG0996|consen 309 EFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFES 388 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444555555566666666666655544321000 011111 122222235556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001620 252 CRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI 300 (1043)
Q Consensus 252 ceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~ 300 (1043)
|..+...++.+--...+.++.+...|.+++++++..+.++..++.-.+.
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~ 437 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEK 437 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchh
Confidence 6677777777777777778888888888888888888777777665555
No 32
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.98 E-value=0.03 Score=70.19 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF 229 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf 229 (1043)
..++..|.+.|-.|+.|.+.-...+.++...|.+++.+++.++.++..+.++.
T Consensus 176 ~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea 228 (1195)
T KOG4643|consen 176 EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA 228 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999888764
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.93 E-value=0.0038 Score=72.87 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS 431 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es 431 (1043)
.++.....++.+.+..++............+..+..+|.....+-...+..|..+.......+.+++....+++.++..
T Consensus 173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444444444444444433
No 34
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.93 E-value=0.006 Score=68.17 Aligned_cols=89 Identities=26% Similarity=0.376 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
-..+..|..+|.++.... .+++++|.+|.+.....-..+..+-..+++++.+.++++..+-.+-.....+...
T Consensus 157 ~~~~~el~aei~~lk~~~-------~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee 229 (294)
T COG1340 157 NEKLKELKAEIDELKKKA-------REIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444443333 3444444444444433333333333334444444444444433333333333333
Q ss_pred hHHHHHHHHHHHHHHH
Q 001620 408 KKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 408 Re~L~ekLkElEeel~ 423 (1043)
...++..|+++..++.
T Consensus 230 ~~~~~~elre~~k~ik 245 (294)
T COG1340 230 FRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 35
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.92 E-value=0.0066 Score=75.75 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=153.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
..+..+|.+=..+|.+++++.+.+..+...+-.+|.-+...+...+.+...||.+ +|.+..|.......|....
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd------ve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD------VEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHH
Confidence 4455778887788899999999999888888999999999999999999999888 8888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHH
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLES 333 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~ 333 (1043)
..|..++++...+..++..+...++..+.++..|...|..|+..+ ++.+.++..
T Consensus 364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l--------------------------~ekd~ql~~ 417 (775)
T PF10174_consen 364 AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL--------------------------REKDRQLDE 417 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHH
Confidence 999999999999999998888888888888888888876663322 122445555
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALV-QRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~I-erLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
+..+++. ..+. .+...+...++.+.-..-.+...|..+-..- .....+++..+..++.+...+..|..+.++..
T Consensus 418 ~k~Rl~~--~~d~---~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 418 EKERLSS--QADS---SNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHhc--cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5555554 1111 1122223333333322222222222221111 12223344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
..|-.+.++...+-.....-...+..+++........+..+..+|.
T Consensus 493 ~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~ 538 (775)
T PF10174_consen 493 LQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE 538 (775)
T ss_pred HHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444555555544444444444444444444444444444444443
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.89 E-value=0.0043 Score=75.54 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccchhhHHHHHHHHHHHHHHHHHH
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF-GQGIVIEDEEARTLMAAAALKSCRET 255 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf-~~~a~IED~eARal~aE~aIksceEt 255 (1043)
..+-.++++-.+.|+..+--..+|+.-...++..+|.+...+|.-+.++|+.. .....||...+|+...+.+|...-..
T Consensus 84 tqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 84 TQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 36777888888899999999999999999999999999999999999998863 22334555555555554433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-CCCCccccchhhhcccccchh----hHhhhhhhHHH
Q 001620 256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSK-KIPHVKDDSVKAVEESDRSDI----DVVRTAQDRED 330 (1043)
Q Consensus 256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaek-e~~~l~~~~le~iSeIpeLee----e~~~l~eEE~r 330 (1043)
|-..-+......+++..++....-.-.++..+++.+..+-... ++.-..++..-.+++...++. ++..+....+-
T Consensus 164 If~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ 243 (1265)
T KOG0976|consen 164 IFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQT 243 (1265)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3222222222222222222222222222222222221110000 000001110111111111111 11111111222
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHH
Q 001620 331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQA 392 (1043)
Q Consensus 331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqe 392 (1043)
+..++..-.-+.+...+...+..++.|+--++.-+..-|..+.|..+..|..++.+|+.++.
T Consensus 244 ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 244 LTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444555556666666777777777777777777777777777776654
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.87 E-value=0.0071 Score=74.68 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
++..+.++.++..+.+|+++++..++-||.++.+-
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34446677777788888888888888888888654
No 38
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.012 Score=70.17 Aligned_cols=255 Identities=15% Similarity=0.163 Sum_probs=143.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 183 LQKQILTLQTDKEFVKSSYE---NWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQM 259 (1043)
Q Consensus 183 LqkeI~~LQtEKEal~sqyq---~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eL 259 (1043)
+..+|..|++.-..+..+|. ..-.++..+|..+..+|.+|..++.= ......+-......++.+...|+.-
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y------~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY------VSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444 33356777777777788888777765 4444445455555556555666666
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-H
Q 001620 260 EEEQEKSAEEAKIERKRI----------KDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-R 328 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI----------~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E 328 (1043)
+++++.+..+.+.+...| .+...+...|..++..+..+++.. . .++-+++-++...-.+ +
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l--~-------k~vw~~~l~~~~~f~~le 377 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL--S-------KEVWELKLEIEDFFKELE 377 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHhHHHHHHHHHHHHH
Confidence 666655555555555443 335555556666665555444430 0 1112222222111111 2
Q ss_pred HHHHHHHHHHHHHHh---------cCCCcc-----------------ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHH
Q 001620 329 EDLESLREKIKEQLE---------FGSSGS-----------------LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQR 382 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~e---------eke~a~-----------------lsV~ELaEkIdeLvnKV~sLE~~ISsqea~Ier 382 (1043)
..+..+.+-|-.+.. +..+.. .-+.++.+.+.+.+++...|+..++.....|+.
T Consensus 378 ~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E 457 (581)
T KOG0995|consen 378 KKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEE 457 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211111111 111111 113567788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 383 LRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 383 Lr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
++..+..+..++..+++.+...+...+++..+- ..++..+.+.+....-++.+.+.++...++...-+++
T Consensus 458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~------~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~ 527 (581)
T KOG0995|consen 458 KIQILGEIELELKKAESKYELKKEEAEEEWKKC------RKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELD 527 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877777665332 2233344444444444555555555555554444443
No 39
>PRK11637 AmiB activator; Provisional
Probab=97.84 E-value=0.0085 Score=69.99 Aligned_cols=84 Identities=20% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
...|+++......|+...........++...+.+++....+|+..+.........|..++.+.+..+..++...+.+...
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444455555555555555555555544444445555555555555555555555555555
Q ss_pred HhhH
Q 001620 436 NYSF 439 (1043)
Q Consensus 436 ~~~L 439 (1043)
+..+
T Consensus 249 I~~l 252 (428)
T PRK11637 249 IARA 252 (428)
T ss_pred HHHH
Confidence 4444
No 40
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.014 Score=72.80 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
..+..+.+...+.+++...+..-+.|+.+...|++...++.++-.+...++.+.+++..+-+.+=.+=..++..+..++.
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666666666666666666666666655555555544444444444444
Q ss_pred HHh
Q 001620 435 QNY 437 (1043)
Q Consensus 435 e~~ 437 (1043)
.++
T Consensus 489 dl~ 491 (1200)
T KOG0964|consen 489 DLS 491 (1200)
T ss_pred HHH
Confidence 433
No 41
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.80 E-value=0.042 Score=66.21 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hccc----------c
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE----------FGQG----------I 233 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE----------f~~~----------a 233 (1043)
..+..++.++++++...+.+|--+..++...-.-+.+|..++..++.....-... +..+ .
T Consensus 37 ~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ 116 (522)
T PF05701_consen 37 EKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKA 116 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHH
Confidence 4556778888888888888888888888888888888887777666433222111 0000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccccCCCCCCCcccc
Q 001620 234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDA-------RDKFESLKHEFIGNEGSKKIPHVKDD 306 (1043)
Q Consensus 234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~ea-------E~elesLk~el~~LEaeke~~~l~~~ 306 (1043)
.++-...|...+-++|.+..+.|.+|+.+...+...-.....++.++ ..+++.|..+|..+...++...+--.
T Consensus 117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 117 ELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333445677777777777766655544433333333332 22333333333333222222100000
Q ss_pred c-hhhhcccc-cchhhHhh----hhhhHHHHHHHHHHHHHHHhcCCCc---cccHHHHHHHHHHHHHhHHh----HHHhh
Q 001620 307 S-VKAVEESD-RSDIDVVR----TAQDREDLESLREKIKEQLEFGSSG---SLTVTEMAEKIDEVVSKVVN----LETSF 373 (1043)
Q Consensus 307 ~-le~iSeIp-eLeee~~~----l~eEE~rLe~Ld~kInEl~eeke~a---~lsV~ELaEkIdeLvnKV~s----LE~~I 373 (1043)
+ -+....|- ..+..+.. +.+.+.+++.|...|.....-..+. +.-+..|...+..+.....+ .....
T Consensus 197 eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~ 276 (522)
T PF05701_consen 197 EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKS 276 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 0 00000000 00001011 1111334444444331111111111 11122222222222221111 22334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 374 SSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 374 Ssqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
......+..+..+|++.+..+....++...|+.....|+.+|.....++..++.........+.+|......+...|.-.
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 44455577777777777777777777777777777777777777777777776666666666666665555555555444
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.80 E-value=0.0038 Score=74.71 Aligned_cols=99 Identities=11% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.||..+.+-|.....++..+...+..+...+.+++.+..++++.+.+-+.+ +.+...+...+++++...+..+.
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~------~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREK------LDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH------HHHHhhhhhhhhhHHHHHHHHHH
Confidence 788888888888888888888888888888888888888888888877776 66666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARD 282 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~ 282 (1043)
.|+++...+..+...+...|..++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666665555555555555443
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.79 E-value=0.015 Score=69.87 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.+++..+++...|......+..+..+...++..++..+...+++...|+.. .++.......+..+...+.....
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~------~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ------QKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666666666666555 44444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDAR 281 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE 281 (1043)
++...+..+.+++..+..+..+.+
T Consensus 217 e~~~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554433
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.77 E-value=0.033 Score=66.95 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=56.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS----SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~----ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
|...+..-...|.+|..++..+.+.+++=-.++.-|..+-...+ -.|.+...++.+++...+.++.+-.-|+...-
T Consensus 362 l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 362 LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555555554444443333333333322222 46777788888888888888888888888888
Q ss_pred HHHHhHHHHHHhhccc
Q 001620 445 EARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 445 Ea~~~L~eLseeL~s~ 460 (1043)
++..-|..|+..|.-+
T Consensus 442 eL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 442 ELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888777654
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.76 E-value=0.066 Score=65.05 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=135.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh--hHHHHHHHHHHHHH
Q 001620 173 KAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE--DEEARTLMAAAALK 250 (1043)
Q Consensus 173 fseAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE--D~eARal~aE~aIk 250 (1043)
+.+|.+-+..|+..+..|+...+.+=.-|..+...+ -.++.+++.-...+..+ |-.++ +...+...+...+.
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~---P~ql~eL~~gy~~m~~~---gy~l~~~~i~~~i~~i~~~l~ 262 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF---PDQLEELKEGYREMEEE---GYYLEHLDIEEEIEQIEEQLE 262 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---HHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHH
Confidence 467778888888888888888888777777766432 33444444444444332 22222 24566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHH
Q 001620 251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDRED 330 (1043)
Q Consensus 251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~r 330 (1043)
+|...|.+| +...+...+..+..+|+.+=+.++.=-......+ ..++.+...+..+...-..
T Consensus 263 ~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~----------------~~~~~l~~~l~~~~~~~~~ 324 (560)
T PF06160_consen 263 EALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE----------------KNLKELYEYLEHAKEQNKE 324 (560)
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHH
Confidence 666666665 3444444444444444443222211110000000 0111122222222222111
Q ss_pred HHHHHHHHHHHHhcCCCccccH-------HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 331 LESLREKIKEQLEFGSSGSLTV-------TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKAS 403 (1043)
Q Consensus 331 Le~Ld~kInEl~eeke~a~lsV-------~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~ 403 (1043)
+..--..++.-..-...-...+ ..+....+.+..++.+-....|...+..+.+...+++..+....+.+.+..
T Consensus 325 l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~ 404 (560)
T PF06160_consen 325 LKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQS 404 (560)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111222 333344455555555555555666666666666666666666666666666
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHhHHHHHHhhcccCch
Q 001620 404 LINDKKDLSSKLVEMEEKLLRLHDLNRSVED--QNYSFQTHLTEARYNIDHLSHKLKIQKTD 463 (1043)
Q Consensus 404 Lk~dRe~L~ekLkElEeel~evq~l~esVe~--e~~~L~srftEa~~~L~eLseeL~s~~~~ 463 (1043)
|+.+=...++++..+..++..+++.++..+- --......|..+...|..+...|..+..+
T Consensus 405 L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pin 466 (560)
T PF06160_consen 405 LRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPIN 466 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 6666666666666666666666665554432 00344567888888888888888765443
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.75 E-value=0.021 Score=70.69 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.0
Q ss_pred hhhhHHHhhhhhHHHHHHHHhh
Q 001620 831 ASFHQIQKFDTEVKDLKNDISK 852 (1043)
Q Consensus 831 ts~hqiQkFqt~~~dLq~el~k 852 (1043)
-.+|.|-+|+++|.+++.-+.+
T Consensus 998 ~~~h~v~~~~ek~ee~~a~lr~ 1019 (1243)
T KOG0971|consen 998 DADHRVEKVQEKLEETQALLRK 1019 (1243)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999888875
No 47
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.75 E-value=0.0081 Score=79.47 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.+|..|+..+..+..+++|++.+|..+..-|...+.++..+.++-..|+.- |-+-+...-.+...|-.|.+.++
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~------i~~~~q~~~~~s~eL~~a~~k~~ 741 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQST------ISKQEQTVHTLSQELLSANEKLE 741 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHHH
Confidence 455555555555555555555555555555555555555555555555554 54444555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
.|+.+...+..+-..+..--.++-.++.+|-.+.
T Consensus 742 ~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~ 775 (1822)
T KOG4674|consen 742 KLEAELSNLKQEKLLLKETEERLSQELEKLSAEQ 775 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555554444444444444444443333
No 48
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0048 Score=77.50 Aligned_cols=251 Identities=15% Similarity=0.189 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
.++..+|.+++++|..++..+++...++...-.+...+.+++..+...++......+. ..+...++...-.|.
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-------rp~li~~ke~~~~~k 302 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-------RPELIKVKENASHLK 302 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHhhcchhhccch
Confidence 4555888999999999998888888888888888888888888888888888666322 222333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH---hhhhhhHHH
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV---VRTAQDRED 330 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~---~~l~eEE~r 330 (1043)
..|..++..+......+......|.+.+..+.++...-...+.+...-...+ .++++..+..+ .++.++-..
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~r-----g~~lnl~d~~~~ey~rlk~ea~~ 377 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQER-----GSELNLKDDQVEEYERLKEEACK 377 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccCCcchHHHHHHHHHHHHHhh
Confidence 5555555555555555544444444444444444333322222221110000 02333333332 333333000
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 001620 331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD 410 (1043)
Q Consensus 331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~ 410 (1043)
++ ..+|.-++.. +..-.+..+.+.++.++++.++......|+|+...++.|...+.+++...+++..+-..
T Consensus 378 -~~-~~el~~ln~~-------~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~ 448 (1141)
T KOG0018|consen 378 -EA-LEELEVLNRN-------MRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDS 448 (1141)
T ss_pred -hh-HHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 00 1222222221 12233445778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 411 LSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 411 L~ekLkElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
|...+..++++-.++...+..+..++..+...+.+
T Consensus 449 l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e 483 (1141)
T KOG0018|consen 449 LESLVSSAEEEPYELNEELVEVLDQLLDASADRHE 483 (1141)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999998888888888887776655543
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.74 E-value=0.067 Score=60.08 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620 376 QTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH 455 (1043)
Q Consensus 376 qea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse 455 (1043)
..+.+..|..++++++....++-+++..|..+...-.+++.++-++.++++.....+|.+...+.....+++..|..+..
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred hh
Q 001620 456 KL 457 (1043)
Q Consensus 456 eL 457 (1043)
.|
T Consensus 236 el 237 (294)
T COG1340 236 EL 237 (294)
T ss_pred HH
Confidence 43
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.66 E-value=0.015 Score=76.97 Aligned_cols=227 Identities=17% Similarity=0.194 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhH-------------------
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDE------------------- 238 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~------------------- 238 (1043)
.=|..|+++..-+.++.+-++..-.....++..+.+.+.+++.-+...+..+...+++-+-
T Consensus 1153 ~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~ 1232 (1822)
T KOG4674|consen 1153 NIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNK 1232 (1822)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHH
Confidence 3344455555555555555555555555555555555555555554444444444433321
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchh
Q 001620 239 ---------EARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVK 309 (1043)
Q Consensus 239 ---------eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le 309 (1043)
..+.-.+..++..++..|..|+.....+..++......+..++.+..-++.....+.....++.
T Consensus 1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d------- 1305 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSD------- 1305 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------
Confidence 1122222233334444444444444444444444444444444444444444443322111100
Q ss_pred hhcccccchhhHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHH
Q 001620 310 AVEESDRSDIDVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT 385 (1043)
Q Consensus 310 ~iSeIpeLeee~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~ 385 (1043)
...+..|..++.++.++ +..++++..+++.+. .-+..+.+.+.+-+.++...|........+|..
T Consensus 1306 -~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1306 -KNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344455566666555 555555555555554 233455566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620 386 ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 386 EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel 422 (1043)
...++.+++-++..-+.....-++....++.+..+++
T Consensus 1375 ~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~ 1411 (1822)
T KOG4674|consen 1375 ALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKL 1411 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555555444444444444444444
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.62 E-value=0.034 Score=74.01 Aligned_cols=202 Identities=9% Similarity=0.083 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.|...|=++++....++...+..+.....++..++..+.++..++..|+.+......--....+.......+..+...+.
T Consensus 279 eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~Le 358 (1486)
T PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE 358 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677777777777777777777777777777777777766621111111111122222344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK 337 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k 337 (1043)
.|+..+......+.....++..++.++..+..++..+..+... +...+..+ ..++..+...
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae----------------lqqel~el---Q~el~q~qq~ 419 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD----------------YQQALDVQ---QTRAIQYQQA 419 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---HHHHHHHHHH
Confidence 5555555555555555555555555555555555433222111 11111122 2333333333
Q ss_pred HHHHHhc---CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 338 IKEQLEF---GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 338 InEl~ee---ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
+..+... ..-..++.++|...++....++..++..+...+.....++..+..+++....+-
T Consensus 420 i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222 223467887777777777777666666666666666666666666555554443
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.60 E-value=0.054 Score=66.55 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=71.3
Q ss_pred cccccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHH-----------hhhhhHHH
Q 001620 312 EESDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLET-----------SFSSQTAL 379 (1043)
Q Consensus 312 SeIpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~-----------~ISsqea~ 379 (1043)
+.|.+....+.....+ +..+..+..+-.-+-.+.+-.+..|.++.+..+.+......... ++-..+++
T Consensus 252 s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrq 331 (1265)
T KOG0976|consen 252 SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQ 331 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333 44444444443444445555666777888887777665554433 33445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 380 VQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 380 IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+-.++.+|-+-+-+.+.+.+.+.+|...|+.+....+.+.+++..++...+++-. -.++....|+.+...+
T Consensus 332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~-------l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLE-------LQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 5566665555555555555555555555555555444444444444444444333 3344444444444433
No 53
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.053 Score=63.46 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
+...++..|++.+..|..++.++..+..+...+..+|.+++..+..|..+.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666666666666666665444
No 54
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.54 E-value=0.1 Score=67.03 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=18.4
Q ss_pred hhhhHHHhhhhhHHHHHHHHhhhhhHHHHh
Q 001620 831 ASFHQIQKFDTEVKDLKNDISKLVSKLEEK 860 (1043)
Q Consensus 831 ts~hqiQkFqt~~~dLq~el~k~~~~l~~~ 860 (1043)
+....++.-+..++-+..+|..++++|-.-
T Consensus 1051 ~~~i~~~~~~~~id~~~~~I~~l~~~L~~~ 1080 (1317)
T KOG0612|consen 1051 EESIRKILLQMIIDSKASEIEELRSKLYEI 1080 (1317)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhhHHH
Confidence 444556666677777777777655555443
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.53 E-value=0.052 Score=66.85 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001620 204 WLAKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 204 ~lekl~eLE~qISeaQeeV~~L 225 (1043)
...++.+++.++.+++.++..+
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l 228 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDL 228 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 56
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.062 Score=67.41 Aligned_cols=262 Identities=15% Similarity=0.209 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 193 DKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE-FGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAK 271 (1043)
Q Consensus 193 EKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE-f~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~ 271 (1043)
+|+--..+|--....+.++..++..+.......-.+ -.....+++.+++...+...|..++..|..|.++.+.+..+-.
T Consensus 217 dk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t 296 (1200)
T KOG0964|consen 217 DKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET 296 (1200)
T ss_pred HHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455444444444444444444333322111 0001124555566667777888888888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhhHhhhhhh-----------HHHHHHHHHHHH
Q 001620 272 IERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDIDVVRTAQD-----------REDLESLREKIK 339 (1043)
Q Consensus 272 ~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee~~~l~eE-----------E~rLe~Ld~kIn 339 (1043)
...+....++-+++.|..++............. |.++ ++|++-..+++.+... ..||..|..+..
T Consensus 297 ~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~---l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 297 KISKKKTKLELKIKDLQDQITGNEQQRNLALHV---LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777777777888888888777664443332211 1122 3555554444444211 455666666655
Q ss_pred HHHhcC-CCccccHH-----HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 001620 340 EQLEFG-SSGSLTVT-----EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS 413 (1043)
Q Consensus 340 El~eek-e~a~lsV~-----ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~e 413 (1043)
.+.... .|+--+-. =++..|..+.--|.+......-.+..|.+++.++.++-+++++|+..+.+.+..-+++-.
T Consensus 374 ~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~ 453 (1200)
T KOG0964|consen 374 DLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDA 453 (1200)
T ss_pred HHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH
Confidence 554432 12211211 144456677777777777777777777777777777778888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 414 KLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 414 kLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
++..+..+++++++.-..+=.+...|+.....+...|..-...|
T Consensus 454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777777776666666666555555554443333
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.50 E-value=0.085 Score=69.34 Aligned_cols=119 Identities=14% Similarity=0.282 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL-------QAQIRTLEDD 400 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL-------qeklkeLEeE 400 (1043)
..++..++...+..+..+.--..+|.++..+|.+|...+...+ .....|.+.+.-..+. ..+...+..+
T Consensus 749 ~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~ 824 (1201)
T PF12128_consen 749 KEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQ 824 (1201)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 6777777777777666665555577777777776666554433 3334444444433333 3334444444
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+..+......+..++..+.. .++.....++.....+.....++...+..|
T Consensus 825 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 825 LRDLEQELQELEQELNQLQK---EVKQRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333222 222233333344444444444444444433
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.50 E-value=0.088 Score=64.02 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620 385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT 462 (1043)
Q Consensus 385 ~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~ 462 (1043)
..+..+......+...+..=..--+.+.+.+.++.+.+..+......+...+.+|+..-.+|...|..++..|+..+-
T Consensus 351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334445566666666666666666666666666666666666666666666665543
No 59
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.065 Score=67.91 Aligned_cols=234 Identities=11% Similarity=0.130 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME 260 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE 260 (1043)
.+|..+|..|+. +.. ....+..++..|+.+|.-+.-++..+... ++.++-.....+..|....-.|..++
T Consensus 662 ~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~------l~~~~~El~~~~~~i~~~~p~i~~i~ 731 (1141)
T KOG0018|consen 662 ERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS------LEQNELELQRTESEIDEFGPEISEIK 731 (1141)
T ss_pred HHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 344455555554 222 56666677777777777777776666544 66666667777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHH
Q 001620 261 EEQEKSAEEAKIERKRIKDARDKFE-SLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIK 339 (1043)
Q Consensus 261 eere~s~eEa~~l~eRI~eaE~ele-sLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kIn 339 (1043)
.++......|+.+.+++..+++.+- .+-..++ +. |.+-++.- ..++...+...++..|.
T Consensus 732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig------------------v~-ir~Yee~~-~~~~~a~k~~ef~~q~~ 791 (1141)
T KOG0018|consen 732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIG------------------VR-IREYEERE-LQQEFAKKRLEFENQKA 791 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------------------ee-eehHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8888888888888888888777653 2322222 11 33222221 12222334444444444
Q ss_pred HHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620 340 EQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEME 419 (1043)
Q Consensus 340 El~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE 419 (1043)
.+...-++... .|...+++.+...|.+++..+.......+++...|++. .++|. ++ +.+...++
T Consensus 792 ~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~----~~~e~--------k~--k~~~~~~~ 855 (1141)
T KOG0018|consen 792 KLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI----EELEK--------KN--KSKFEKKE 855 (1141)
T ss_pred HHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH----HHHHH--------HH--HHHHHHHH
Confidence 43333332222 66777777777777777777777777777777666666 22222 11 55666677
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 420 EKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 420 eel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
.++.++......+-.+++.|....+.+++.|+.+..+-|+.
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l 896 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL 896 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 77777777777777788888888888888888877766653
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.37 E-value=0.16 Score=62.66 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF 229 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf 229 (1043)
+..+.+++..|+.+...+..+++....++..++.++..++.++..++..|
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666654
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.33 E-value=0.2 Score=61.45 Aligned_cols=210 Identities=15% Similarity=0.209 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHH
Q 001620 175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRE 254 (1043)
Q Consensus 175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceE 254 (1043)
+.+.+++.|+++|..|.++.+.+...+..+...+..+..++...+.....++.++. ...++..-+..-++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~----------l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK----------LKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhcCcHH
Confidence 44478888888888888888888888888888888888888888777777766632 22223333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHH
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDK----FESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDRED 330 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~e----lesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~r 330 (1043)
-|.+|+.-...+...+..+..+-+..+.. +..|+...... .. .. ...+.+|..+..++..+..+
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~----~~---e~--~~~~~~ik~~r~~~k~~~~e--- 462 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR----ES---ES--KQKLQEIKELREEIKEIEEE--- 462 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----ch---HH--HHHHHHHHHHHHHHHHHHHH---
Confidence 56677777777777777776666665443 33333333211 11 01 11223344444443333333
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 001620 331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD 410 (1043)
Q Consensus 331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~ 410 (1043)
++..+..++.|..+-+.....+ .+.....+|-++-.+|-.|.+.|.+.-.++..+++.+..+.+.+.-=..--++
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDV-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333222221122222 25667888888888889999999999999999999999988877543333333
Q ss_pred H
Q 001620 411 L 411 (1043)
Q Consensus 411 L 411 (1043)
|
T Consensus 538 l 538 (594)
T PF05667_consen 538 L 538 (594)
T ss_pred H
Confidence 3
No 62
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.32 E-value=0.25 Score=56.13 Aligned_cols=240 Identities=18% Similarity=0.296 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.++..+++....|+-+++.+..++..+...-.-|+.==-++|.+-..+.++- ...+...+.+...+ ....+.+|.
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~--~~~~~eee~kR~el---~~kFq~~L~ 117 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES--KRRAREEEEKRKEL---SEKFQATLK 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHH
Confidence 6667777888888888888888888888888888888788888888886661 11222222222222 334457777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh---------hhH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA---------QDR 328 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~---------eEE 328 (1043)
.++..++.-...-..+...-..+..+++.|-..+.- +..++..+-+-.+|+.++...+ .+.
T Consensus 118 dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~----------rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~ 187 (309)
T PF09728_consen 118 DIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL----------REEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK 187 (309)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 777777766666666666667777777777666541 1111223333333333332211 112
Q ss_pred HHHHHHHH-------HHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 329 EDLESLRE-------KIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK 401 (1043)
Q Consensus 329 ~rLe~Ld~-------kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl 401 (1043)
.+...+.. .+..+.. +-.+|...+.-.++|-......++..+.....++.|++.+.++++.||.+.
T Consensus 188 ~k~~~~~~~~l~~~~~~~~~~~-------~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~ 260 (309)
T PF09728_consen 188 EKAKQEKEILLEEAAQVQTLKE-------TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN 260 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 3333333 337888899999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620 402 ASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF 439 (1043)
Q Consensus 402 ~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L 439 (1043)
..++..-+.-+..|-++-++.......+..+..++..|
T Consensus 261 ~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 261 QTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877777777774433
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.31 E-value=0.048 Score=65.64 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 196 FVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI-VI-EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIE 273 (1043)
Q Consensus 196 al~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a-~I-ED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l 273 (1043)
.+...+-..++|+--||.+-..++-+|..|+.-|+.+. .| .-.++....+...|.+.....++++-++..+..+.+.+
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKEL 125 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455666777888888888888888888888775542 22 22334444444444444444555555555555555555
Q ss_pred HHHHHHHHHH
Q 001620 274 RKRIKDARDK 283 (1043)
Q Consensus 274 ~eRI~eaE~e 283 (1043)
..+..++...
T Consensus 126 r~~~~~~~k~ 135 (546)
T KOG0977|consen 126 RKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.29 E-value=0.32 Score=61.54 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=30.5
Q ss_pred cccccCccccccccCCCCCCchHHHHhHHHHHHHHHHHHHHhhhc
Q 001620 3 QRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEED 47 (1043)
Q Consensus 3 qRAAsn~~~ww~~shi~~~~s~wL~~~l~dmd~kvk~~l~li~ed 47 (1043)
+|-++-+|+... -+..+++.-|..+|+|++.|++.+---++|-
T Consensus 154 s~s~~~~~~sp~--~~~~~~~~hL~velAdle~kir~LrqElEEK 196 (1195)
T KOG4643|consen 154 SRSGKELYKSPY--DIVVKKNLHLEVELADLEKKIRTLRQELEEK 196 (1195)
T ss_pred cccCCCCCCCcc--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554443 4567888899999999999998887766643
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.28 E-value=0.16 Score=62.51 Aligned_cols=224 Identities=18% Similarity=0.284 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 183 LQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEE 262 (1043)
Q Consensus 183 LqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEee 262 (1043)
|.+.|..|+.||+..-..|+.-.. .+..++..|..+|+.|..+ .+..-.+ +..++..|.+|+..
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a---~~qqr~~qmseev~~L~eE------k~~~~~~-------V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESA---QWQQRMQQMSEEVRTLKEE------KEHDISR-------VQELERSLSELKNQ 65 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHH-------HHHHHHHHHHHHHh
Confidence 456677788888877766664433 2456666777777777555 3333333 33344444444433
Q ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh-hHHHHH
Q 001620 263 QEKSA---------EEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ-DREDLE 332 (1043)
Q Consensus 263 re~s~---------eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e-EE~rLe 332 (1043)
+.... +.-..+..++..+..+++.|...+. . . ++. ...++.+.. .+.+|.
T Consensus 66 ~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq-------a-q-----v~~-------ne~Ls~L~~EqEerL~ 125 (617)
T PF15070_consen 66 MAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ-------A-Q-----VEN-------NEQLSRLNQEQEERLA 125 (617)
T ss_pred hcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-------H-H-----HHH-------HHHHHHHHHHHHHHHH
Confidence 32100 0001122222223333333332221 1 0 000 112233332 266777
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH---
Q 001620 333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK--- 409 (1043)
Q Consensus 333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe--- 409 (1043)
.++..+..+.+.. .| ...+...+.+=...||-+-++-..|+..+.+++...-.|..++.+|+....
T Consensus 126 ELE~~le~~~e~~-------~D----~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 126 ELEEELERLQEQQ-------ED----RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHHHHHHHHHHH-------HH----HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 7776666654322 33 333444444444455555555567888888888888888888776666544
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 410 ----DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 410 ----~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+|..+|-+++.++..++..+..-..++.+|+....++...|..-
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666566666666666554444444
No 66
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.15 Score=64.44 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 001620 36 KVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERY 83 (1043)
Q Consensus 36 kvk~~l~li~ed~dsfakraemyy~kRpeLi~~vee~~r~Yr~Laery 83 (1043)
+++.-|..+.-+.+-| +.--++|-.|...+-.+-+.|..|--||
T Consensus 459 ~l~~~l~~l~~~~~~~----e~l~q~~~~l~~~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 459 KLKKRLQSLGYKIGQE----EALKQRRAKLHEDIGRLKDELDRLLARL 502 (1174)
T ss_pred HHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444333331 2233445555555555555555555554
No 67
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.25 Score=63.19 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhhHHHHHHhhhhh
Q 001620 705 ILAEYTTVLRNYKEAKKKLDESG 727 (1043)
Q Consensus 705 LL~eYtsvLrnYke~k~kL~e~E 727 (1043)
++....+.+.+|...++++..+.
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 717 LIEELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444
No 68
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.20 E-value=0.094 Score=55.81 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 001620 176 GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRET 255 (1043)
Q Consensus 176 Ae~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEt 255 (1043)
|+.+|..|..+|..|+.+.+.....|.....++.+++.--.+....+..|... ...++.+...++..++.++-.
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr------~~kdEE~~e~~e~qLkEAk~i 75 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENR------AQKLEEKMEAQEAQLKEAKHI 75 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999998887776666666555444 344445666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
-..-..+-+.+.--+..+.+.+.+++..++.-...+
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~ 111 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQS 111 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444443
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.19 E-value=0.28 Score=61.25 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
..|.+.|+.+|..+..+- ....|.+..++..+..|..-..+....++.|-..|..++++=..||.-|.+=..=
T Consensus 544 r~r~~~lE~E~~~lr~el-------k~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtri 616 (697)
T PF09726_consen 544 RQRRRQLESELKKLRREL-------KQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRI 616 (697)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444455555555544332 1222333333333333332223334456666666666666666666666554444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srf 443 (1043)
.-+|=..|-+++..+.-++..+..-+.++..|+.++
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665555555555555544444333
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.1 Score=64.20 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHH-------hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVV-------NLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE 420 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~-------sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe 420 (1043)
.-|..++.+|..|+. .....|...+.++++...+++.|+.+++++.+-+--|.-++..|.++|+.+..
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 334444555555544 45567777778888899999999999999999999999999999987776543
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.17 E-value=0.16 Score=66.93 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 415 LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 415 LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+..++.+...++...+....++..++..+.++...+..|...|
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333344444444445555555555554443
No 72
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.12 E-value=0.00011 Score=92.43 Aligned_cols=254 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME 260 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE 260 (1043)
..|...+..-+.|..++...++.-......+.++|.++|.+|..|+++ ++..-.-..+++.+-..+...|..|.
T Consensus 7 ~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~ee------Le~Er~~R~kaek~r~dL~~ELe~l~ 80 (859)
T PF01576_consen 7 EELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEE------LESERQARAKAEKQRRDLSEELEELK 80 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777788888888888888888888888888877 55444444556666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC--CCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620 261 EEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKK--IPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI 338 (1043)
Q Consensus 261 eere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke--~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI 338 (1043)
.....+......-.+-..+-+.++..|+..+......-+ ...++.++ ...+.+|..+++.+......+
T Consensus 81 ~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh---~~~~~eL~eqle~lqk~k~~l------- 150 (859)
T PF01576_consen 81 ERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKH---QDAVAELNEQLEQLQKQKAKL------- 150 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH-------
Confidence 777666665554444445556677777776653222111 11121111 124455555555544331111
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620 339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418 (1043)
Q Consensus 339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl 418 (1043)
--.+.....-+.+|...++.+...+++.+..+...++++..++..+++....+.+|...+.-|..+.+.|...+.++
T Consensus 151 ---EK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~ 227 (859)
T PF01576_consen 151 ---EKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEA 227 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222233444444444555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 419 Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+..+..+.+....+..++..++..+.+-...-..|
T Consensus 228 e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L 262 (859)
T PF01576_consen 228 ESQLSQLQREKSSLESQLEELKRQLEEETRAKQAL 262 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhh
Confidence 54444444444444444444444444333333333
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.09 E-value=0.014 Score=63.74 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
.++..++.++.+.+.+++.+.+.+..++.+....|.+++.++..++.......+.. .+.++..+.-.+...+.+++
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~----e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER----ELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56668999999999999999999999999999999999999999988887665541 12222233333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
..|..|.++++.+..+...+..++...+..+..++
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333333
No 74
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=97.00 E-value=0.29 Score=56.89 Aligned_cols=172 Identities=18% Similarity=0.237 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCc----cccchhhhcccccchhhHhhh-----hhhHHHHHHHHHHHHHHHh
Q 001620 273 ERKRIKDARDKFESLKHEFIGNEGSKKIPHV----KDDSVKAVEESDRSDIDVVRT-----AQDREDLESLREKIKEQLE 343 (1043)
Q Consensus 273 l~eRI~eaE~elesLk~el~~LEaeke~~~l----~~~~le~iSeIpeLeee~~~l-----~eEE~rLe~Ld~kInEl~e 343 (1043)
...++..++..|..|+..++- .... .+.+ .... .+..+..|..++.-| ..-+.||..|-.++..+..
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~-~~~~-~~~l~~~~~~~~--l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGI-DSDK-MSSLDSDTSSSP--LLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-Cccc-cccccccCCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888888887 2221 1111 1111 122344455555444 3338899999999888776
Q ss_pred cCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620 344 FGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 344 eke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ 423 (1043)
.+.... .-.+-..+|++|=+.+..++.-....=..|+||+. |..+|.....+-.-+..|.....+|...++..+.-+.
T Consensus 283 ~~~~~~-~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t-L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~ 360 (388)
T PF04912_consen 283 KRKEAK-EDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT-LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN 360 (388)
T ss_pred cccccc-ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332 33466789999999999999999999999999985 7889999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 424 RLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 424 evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
.|+.. +......+...+..+...|..|
T Consensus 361 ~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 361 KVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 77665 6666677777777777777655
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.1 Score=64.63 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=60.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001620 322 VRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD- 400 (1043)
Q Consensus 322 ~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE- 400 (1043)
.++.+...++..++..|..++.+-+.+...++.|...=--+-+..-..+.+.+.....++-....+.++.+++..|+..
T Consensus 806 ~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 806 TRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 3333345555555555555555555444445444433333334444444445555555555555555555555555522
Q ss_pred ------HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001620 401 ------KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARY 448 (1043)
Q Consensus 401 ------l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~ 448 (1043)
++-+...+++|.-++..+..+..++.-+....+..+.+++.....+..
T Consensus 886 dse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 886 DSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred cchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 122223334444444455555555554444444444444444333333
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.95 E-value=0.0002 Score=88.50 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 185 KQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI-VIEDEEARTLMAAAALKSCRETLTQMEEEQ 263 (1043)
Q Consensus 185 keI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a-~IED~eARal~aE~aIksceEtL~eLEeer 263 (1043)
..+..+..+++.+...+......+..|..+...++.+...++..++... ... .-.......+..++..|..|+.+.
T Consensus 179 ~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~ql~~L~~el 255 (713)
T PF05622_consen 179 EELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSE---EPSQHLSVELADLRAQLRRLREEL 255 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC---CcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444455555555555555444444321100 000 000011122222333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHh
Q 001620 264 EKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLE 343 (1043)
Q Consensus 264 e~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~e 343 (1043)
............++..++.++..|+++...+...-..+ ..|. .++..+.+.++++..-+..++....||.++
T Consensus 256 ~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a-~~Lr-----DElD~lR~~a~r~~klE~~ve~YKkKLed~-- 327 (713)
T PF05622_consen 256 ERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREA-RALR-----DELDELREKADRADKLENEVEKYKKKLEDL-- 327 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33333333334444444455555555544442221110 0111 234444444444444455666666555554
Q ss_pred cCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620 344 FGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 344 eke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ 423 (1043)
.+..-.|.+|.++...++++++.||...... ..++..++.++..+.+|+.++.........+..++..+.+++.
T Consensus 328 --~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~----~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 328 --EDLKRQVKELEEDNAVLLETKAMLEEELKKA----RALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577888888888888888888776543 3356666667777777776666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 001620 424 RLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 424 evq~l~esVe~e~~~L~srf 443 (1043)
.+......+..+...|+...
T Consensus 402 ~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 402 ALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66555555555544444433
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.15 Score=56.66 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKF 284 (1043)
Q Consensus 240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~el 284 (1043)
+.+..+-..+.+.++.+.+++.+++.+..+++.+.++|.+-...+
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555666666666666665544443
No 78
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.90 E-value=0.00023 Score=89.63 Aligned_cols=263 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
..|+.+++.....+.-+-.+..++..+-.++.+.++.++++......|+.+ +.+........+..+..+.....
T Consensus 166 ~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E------~~eL~~qLee~e~~~~~l~r~k~ 239 (859)
T PF01576_consen 166 AQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSE------NSELTRQLEEAESQLSQLQREKS 239 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555556666666655666555 44444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLES 333 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~ 333 (1043)
.|+..+..+...+......-..+...+..+..++..+...+++. ......+...+..++.+ ..+++.
T Consensus 240 ~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE---------~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 240 SLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEE---------EEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555555555566666666665554444431 11222333333333333 122211
Q ss_pred -HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 334 -LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 334 -Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
...++.++-+.+......+.++.+.++.+..++..|+......+..++.+..+++..+.....|+..-..+-.....++
T Consensus 311 e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k 390 (859)
T PF01576_consen 311 EAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWK 390 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1122333444455566677888888888888888888888777777777777777777666555554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH 455 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse 455 (1043)
.++..+..+++.++.-...+..++-.|+..+.++...+..+..
T Consensus 391 ~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~ler 433 (859)
T PF01576_consen 391 AKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELER 433 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.88 E-value=0.58 Score=60.02 Aligned_cols=47 Identities=9% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 178 KEIDKLQKQILTLQ-----TDKEFVKSSYENWLAKYWDIEEQIKELQQRVYS 224 (1043)
Q Consensus 178 ~EIerLqkeI~~LQ-----tEKEal~sqyq~~lekl~eLE~qISeaQeeV~~ 224 (1043)
..|+.|+.+.+.|+ .+...+--+++...+.|.+++.-++...-+|.+
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~r 1543 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIAR 1543 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHH
Confidence 66666666666665 344455555566666666666666555544443
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.88 E-value=1.6 Score=54.10 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
++...++.++..|-.+...++..-+....++.+|++.|++++.++......- ..+.-. .....+.+++..|...+.
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-~pa~ps---e~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-PPAGPS---EVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-ccccch---HHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888888889999999988887776554221 111111 122333444555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
.|..+...-..+...+..-+.+.+..+..|...+
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~l 131 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEEL 131 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544333333333333333333333333333
No 81
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.86 E-value=0.96 Score=60.91 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
..++.....+....+-+|+...+++.+.-..++..+++|..++..|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554444443
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.86 E-value=1.2 Score=59.84 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 184 QKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQ 263 (1043)
Q Consensus 184 qkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeer 263 (1043)
+..|..|+.+...+..++....+++..+..++..+..+...+=.+ .....+-..+..+...+.....+.
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~-----------~dL~~A~~~l~~A~~~~~~a~~~l 809 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSD-----------RSLRAAHRRAAEAERQAESAEREL 809 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655555555555555666666655555555555333 222333445555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 264 EKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 264 e~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
......+.....++..++..+...-.++
T Consensus 810 ~~a~~~l~~a~~~~~~a~~~l~~aaa~l 837 (1353)
T TIGR02680 810 ARAARKAAAAAAAWKQARRELERDAADL 837 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666666666666666666655555444
No 83
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.85 E-value=0.77 Score=59.47 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=9.7
Q ss_pred hccchHHHHHHHHHhhhhh
Q 001620 748 NTEKDEEIQSLRQKLSILQ 766 (1043)
Q Consensus 748 n~~Kd~eI~sLr~~l~~~~ 766 (1043)
...+.-+|-.||-+|-...
T Consensus 1063 id~~~~~I~~l~~~L~~~~ 1081 (1317)
T KOG0612|consen 1063 IDSKASEIEELRSKLYEIN 1081 (1317)
T ss_pred HhhhHHHHHHHHhhhHHHh
Confidence 3345555666665444433
No 84
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.82 E-value=0.13 Score=62.61 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhc
Q 001620 265 KSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEF 344 (1043)
Q Consensus 265 ~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~ee 344 (1043)
.+...+..+..++.-+..+..+|+.++..+..++.+..+ .+.+..-+.-|+.+..+
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~------------------------~DeLaEkdE~I~~lm~E 461 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL------------------------KDELAEKDEIINQLMAE 461 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh------------------------hHHHHHHHHHHHHHHHH
Confidence 334445555555555555555566555544433333111 23456666677777777
Q ss_pred CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620 345 GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR 424 (1043)
Q Consensus 345 ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e 424 (1043)
++..+..+..-.--|.-|-.|+..-+..+.....+|..|.+|.+.|+.-+..-|+=-..+++-..+++..+...++...+
T Consensus 462 GEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~ 541 (961)
T KOG4673|consen 462 GEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSN 541 (961)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 75444444444444556666666666666666667777777777776666655554456666666677777777777777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 001620 425 LHDLNRSVEDQNYSFQTHLTEARY 448 (1043)
Q Consensus 425 vq~l~esVe~e~~~L~srftEa~~ 448 (1043)
.+.++..++.++-+++..|.++..
T Consensus 542 sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 542 SRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777777777777777777766665
No 85
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.81 E-value=0.27 Score=55.79 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 248 ALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESL 287 (1043)
Q Consensus 248 aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesL 287 (1043)
.+..++++|..|+++-..+..++..+.......+++-..|
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 3455555555555555555544444444444444433333
No 86
>PRK11281 hypothetical protein; Provisional
Probab=96.81 E-value=1.1 Score=58.80 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=115.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc
Q 001620 234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE 313 (1043)
Q Consensus 234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe 313 (1043)
.+.+.+.+....+.++.+.++.|+.+....-.....-.....++.++...+..+++.+..+...... +.. +.
T Consensus 122 Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~--l~~------~~ 193 (1113)
T PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA--LRP------SQ 193 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CCH------HH
Confidence 3444556666666666666666666666666666666666667777777777777766554322211 111 00
Q ss_pred cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620 314 SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393 (1043)
Q Consensus 314 IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek 393 (1043)
.-.+ ..++..++.++.-...+-...+...+=...++|-+-.++.-++..|...++.|+..|.+-.+...+
T Consensus 194 ~~~l----------~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~ 263 (1113)
T PRK11281 194 RVLL----------QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQ 263 (1113)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 222222333322222222234444455555666666677777777777777777766665555332
Q ss_pred HHHHHHH---------HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 394 IRTLEDD---------KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 394 lkeLEeE---------l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
.....+. +..+-+-+..|...|..+-++++.+......+..++..+...+..+...|+-|
T Consensus 264 ~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 264 EAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211111 33344557777788888888888888777777777777777766666666554
No 87
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.99 Score=56.17 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=72.8
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
...+-.+...+..+...+.......+.|+.++++.++.+..++..+..+....+.+..+.+.+++++.++.+...++...
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445555555566666666666666677777777777777777777777777777777777777777777777777666
Q ss_pred HhhHHHHHHHHHHhHHHHHHhhcccCch
Q 001620 436 NYSFQTHLTEARYNIDHLSHKLKIQKTD 463 (1043)
Q Consensus 436 ~~~L~srftEa~~~L~eLseeL~s~~~~ 463 (1043)
.. ..+.-..+..+|.+.++.|.++.+.
T Consensus 624 ~~-~~s~d~~L~EElk~yK~~LkCs~Cn 650 (698)
T KOG0978|consen 624 ES-GASADEVLAEELKEYKELLKCSVCN 650 (698)
T ss_pred cc-cccccHHHHHHHHHHHhceeCCCcc
Confidence 44 2333455667888888889888765
No 88
>PF13514 AAA_27: AAA domain
Probab=96.80 E-value=1.2 Score=58.58 Aligned_cols=66 Identities=29% Similarity=0.521 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHH-----HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKI-----DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkI-----deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
..++..+...|.... ....+.++.... +.+...+..++..+...+..+..+..++..++..+..|+
T Consensus 860 ~~~~~~~~~~l~~~~-----~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 860 REELEDLERQLERQA-----DGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHhhc-----CcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555543321 222445554443 444444444444444444444444444444444444443
No 89
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.76 E-value=0.37 Score=60.27 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
.++.+..++-.+ +.-|..+.....+.+..||..+.+......+-..+++.|-..|..+.+....|...-+.=.
T Consensus 542 ~~r~r~~~lE~E-------~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 542 SCRQRRRQLESE-------LKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455565554332 3556666666677777777777444433233455677777777777777777755432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
.=--.|-..|-..++-++-++.++..-...+.++...|.++
T Consensus 615 riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 615 RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112333344444444444444443355555555555554
No 90
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.74 E-value=0.57 Score=50.63 Aligned_cols=195 Identities=16% Similarity=0.270 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.-|..++.++...+.+...+...|......+..+..-+.+..+-|..+ |++.+.. .......|.
T Consensus 9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~---------i~e~~~~-------~~~~~~~i~ 72 (207)
T PF05010_consen 9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQM---------IEEKQKQ-------KELSEAEIQ 72 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHHHHhh-------HHhHHHHHH
Confidence 567777888888888888888888888888877777777777776666 4432222 444456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK 337 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k 337 (1043)
++..++..+..++..+..-+.++-...+.++..+.+.....+. ++ ..+.+...++..++.|++.|..-
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~--Lk----------k~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEET--LK----------KCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH--HH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888887788877777777777666443322 11 22456667777778888888777
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
-.+.+.. +-.+++.-.......+..|...+...+-.|..|...++-+.....+|..=|.+|+.
T Consensus 141 AeekL~~------ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 141 AEEKLEK------ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544331 22444444455555555555555555555555555555555555555555554443
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=1.3 Score=53.84 Aligned_cols=207 Identities=12% Similarity=0.175 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchh
Q 001620 240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDI 319 (1043)
Q Consensus 240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLee 319 (1043)
.+...+...++-.+.-.+++..+.......+.++...|.+.+.+++.|+.+...|....+. ..|+ .+
T Consensus 266 e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~--------Q~iS-----~~ 332 (581)
T KOG0995|consen 266 EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL--------QGIS-----GE 332 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCC-----HH
Confidence 3444444555555566666666666666777777777777777777777777666443332 1121 12
Q ss_pred hHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhh-------------------
Q 001620 320 DVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQ------------------- 376 (1043)
Q Consensus 320 e~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsq------------------- 376 (1043)
++.+|+.+ ...|..+..++-.+..+-....+-+.+..+.|+...-.-..+-.+|..-
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~ 412 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNG 412 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccc
Confidence 33344333 2223333333333222222222222222222222222222222222211
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHH
Q 001620 377 ---TA-LVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT----EARY 448 (1043)
Q Consensus 377 ---ea-~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft----Ea~~ 448 (1043)
.+ -.-.++..+++....+.+.+.++..|.+..+.+...+.+....+..++..+..+.+.-.-++.... ....
T Consensus 413 ~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~ 492 (581)
T KOG0995|consen 413 VDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRK 492 (581)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123566777777888888888888888887777766666655555555544444443332222211 1224
Q ss_pred hHHHHHHhhcc
Q 001620 449 NIDHLSHKLKI 459 (1043)
Q Consensus 449 ~L~eLseeL~s 459 (1043)
+++.|..+|+.
T Consensus 493 E~e~le~~l~~ 503 (581)
T KOG0995|consen 493 EIEKLEEELLN 503 (581)
T ss_pred HHHHHHHHHHH
Confidence 55556555553
No 92
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.70 E-value=1 Score=49.75 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhcC-CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620 330 DLESLREKIKEQLEFG-SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 330 rLe~Ld~kInEl~eek-e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR 408 (1043)
..+.|-.+|...+... .........+.+.+.+...|+.+|...+..+.+.+..-..-+..-+..+.+++..+..+.+..
T Consensus 157 ~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 157 EAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554222 112223345556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 409 KDLSSKLVEMEEKLLRLHDLNRSVE 433 (1043)
Q Consensus 409 e~L~ekLkElEeel~evq~l~esVe 433 (1043)
....+-|.+++.-+.....+...++
T Consensus 237 ~~~~~~L~~a~~~L~~a~~ll~~~~ 261 (264)
T PF06008_consen 237 NEVSETLKEAEDLLDQANDLLQEMQ 261 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666655555443
No 93
>PRK09039 hypothetical protein; Validated
Probab=96.65 E-value=0.29 Score=56.32 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ 326 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e 326 (1043)
.+|...+..|..|+.++..+.+-+.....+...++..+..|+..+..+++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~------------------------------ 95 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA------------------------------ 95 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------------------
Confidence 45555555566666666666666666666666666666666655541111
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
...+++.... ... ....++..+...+......+...+++...+|.+|+.+|+.|+.++..|+..+..++.
T Consensus 96 ~r~~Le~~~~---~~~-------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 96 ERSRLQALLA---ELA-------GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHh---hhh-------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222111 110 112455666677788889999999999999999999999999999999999998888
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 001620 407 DKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 407 dRe~L~ekLkElEeel~ev 425 (1043)
...+.+.++..++.++...
T Consensus 166 ~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 166 RDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777777777666655
No 94
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.63 E-value=0.00048 Score=85.13 Aligned_cols=219 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDI-----------EEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAA 248 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eL-----------E~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~a 248 (1043)
...|..++..|+.|++.+....+.+..++..+ ..+..+++.++..|+++ +++.++........
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~e------l~~~e~~~~d~~~~ 268 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREE------LERLEEQRDDLKIE 268 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 34455555556666665555554444443333 34556666677777666 33333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhH
Q 001620 249 LKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDR 328 (1043)
Q Consensus 249 IksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE 328 (1043)
+..++..|.+|+.+...+.. ...++..+++++..|+....++.. ++.....|+. ++..+..+..++..+++.
T Consensus 269 ~e~le~ei~~L~q~~~eL~~----~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKk--KLed~~~lk~qvk~Lee~- 340 (713)
T PF05622_consen 269 LEELEKEIDELRQENEELQA----EAREARALRDELDELREKADRADK-LENEVEKYKK--KLEDLEDLKRQVKELEED- 340 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHH-
Confidence 33334444444433332222 223344455555555544433211 1122223442 222233333332222222
Q ss_pred HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620 329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR 408 (1043)
...+-..+..+-+.- .++..+...++.+...|..|+.........++++..++..|++++..|+.++..|...+
T Consensus 341 --N~~l~e~~~~LEeel----~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~ 414 (713)
T PF05622_consen 341 --NAVLLETKAMLEEEL----KKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER 414 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111110 12334556677777888888888888888888888888888888888888877777777
Q ss_pred HHHHHHHHHH
Q 001620 409 KDLSSKLVEM 418 (1043)
Q Consensus 409 e~L~ekLkEl 418 (1043)
+.|++.+.++
T Consensus 415 ~~L~e~~eeL 424 (713)
T PF05622_consen 415 DSLRETNEEL 424 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 7776655444
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.61 E-value=0.12 Score=56.69 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
.+|.-.|+.+..++++|+..+......++.|..++..++.++..++..+.++
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666666655555555555555433
No 96
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.60 E-value=1.2 Score=53.67 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
+.+++.|...|.+....- ..+-+.+..+.+..+.++|-++=.-+..=-+.-+.-..-...|...+.-+.+.+..|+.+
T Consensus 254 d~~~~~L~~~l~~~~~~l--~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~E 331 (570)
T COG4477 254 DSRLERLKEQLVENSELL--TQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEE 331 (570)
T ss_pred HHHHHHHHHHHHHHHhHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 666666666666433222 223334444444444444443311111111111111111222333333344444444444
Q ss_pred hHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 408 KKDLSSK----------LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 408 Re~L~ek----------LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
...++.. .+..+.++.++......|-.....-..+++.+..++..+...|.++
T Consensus 332 ie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i 394 (570)
T COG4477 332 IERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI 394 (570)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444422 3344455555555555555555555556666666666666655554
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.48 E-value=0.061 Score=54.70 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 390 LQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 390 LqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
|..++.-||+++......-....++|+++..+...+.+.+..++.+......++.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444444433333333344444444444444443333333333333333
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.47 E-value=0.097 Score=53.27 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRT---LEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklke---LEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~ 429 (1043)
..+...|..|..|+..|+..|...+..+......+++....... |...+..|..+-+.....|+++.+++..+....
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444433222 333333333333333344444444444444444
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 430 RSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 430 esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
..++.+...|..+.......++.+..++
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.45 E-value=2.3 Score=50.38 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVE 433 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe 433 (1043)
+|+..-..+.-....|....+.+.++..+|...+.|.++-+..|+.++........+|...-..|+.++.++..-.-++.
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555666677777778888888888888888888888877776666666666555555555555544333333
Q ss_pred H
Q 001620 434 D 434 (1043)
Q Consensus 434 ~ 434 (1043)
.
T Consensus 252 e 252 (420)
T COG4942 252 E 252 (420)
T ss_pred H
Confidence 3
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.42 E-value=4.5 Score=51.32 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR 424 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e 424 (1043)
..|++.++++.+----++++..++....+.|+.|+.-+..+++.|+..+.-+.........++..+.+..++
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~ 540 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR 540 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 556666777777777777888888888888888888888888888887665555554444444444444433
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.39 E-value=0.95 Score=55.74 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
..-..+|+.|...|..+.++...+..++.++.+.+...+.....+++++.....- ...+.|.++-..+++..+....
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~---~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT---VELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHH
Confidence 3444889999999999999999999999999999999999999998888865433 2235555555666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 001620 254 ETLTQMEEEQEKSA 267 (1043)
Q Consensus 254 EtL~eLEeere~s~ 267 (1043)
..+.+|..+-+..+
T Consensus 408 ~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 408 QRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665544333
No 102
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.39 E-value=0.76 Score=60.19 Aligned_cols=108 Identities=13% Similarity=0.233 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQ--TALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsq--ea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~ 429 (1043)
+..+.+.++.+.+++..+...+..+ ......=+.++-.+..++++++.++..|........ .....++...++.-.
T Consensus 973 l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~ 1050 (1294)
T KOG0962|consen 973 LSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEER 1050 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 3445555666666666666555433 334444455666677777777777776655554444 566667777888888
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620 430 RSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK 461 (1043)
Q Consensus 430 esVe~e~~~L~srftEa~~~L~eLseeL~s~~ 461 (1043)
+.+..+.+-+....-+++..+..+..+|..+.
T Consensus 1051 ~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1051 EKLSSEKNLLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888999999999999988887543
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.35 E-value=1.5 Score=46.93 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
+..++..+...+..|+++-..+..+++.+......+..++.+|..+-.
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455554444444444444444444444444444433
No 104
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.33 E-value=3.8 Score=50.77 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=141.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 186 QILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEK 265 (1043)
Q Consensus 186 eI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~ 265 (1043)
.-..|..+.+.++..++.+...---|+..+.-+-+.+..+..+ .++.....-.+...--.-+.+|+..+-.
T Consensus 290 ~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e---------Ke~~~Ee~nk~k~~~s~~v~e~qtti~~ 360 (786)
T PF05483_consen 290 EQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE---------KEAQMEELNKAKAQHSFVVTELQTTICN 360 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666333 2233333333333333444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH---hhhhhh-------HHHHHHHH
Q 001620 266 SAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV---VRTAQD-------REDLESLR 335 (1043)
Q Consensus 266 s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~---~~l~eE-------E~rLe~Ld 335 (1043)
+.+=+...-.|+...++.+..|..++.+--++++........ ..+ ++.+|...+ +.+-.+ ...++...
T Consensus 361 L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~-ke~-eleeL~~~L~e~qkll~ekk~~eki~E~lq~~e 438 (786)
T PF05483_consen 361 LKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNN-KEV-ELEELKKILAEKQKLLDEKKQFEKIAEELQGTE 438 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777776554444321100000 000 011111110 011111 12222233
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhch
Q 001620 336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD-------ELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~Ele-------ELqeklkeLEeEl~~Lk~dR 408 (1043)
..|..++-.+ ...|-||...+-.+...-. ...-+|+.|+.+++ +|-.....|.-+...|.-+.
T Consensus 439 qel~~llq~~---ekev~dLe~~l~~~~~~eq-------~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~ 508 (786)
T PF05483_consen 439 QELTGLLQIR---EKEVHDLEIQLTTIKESEQ-------HYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQET 508 (786)
T ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 1123333333222222222 23445555555555 56677778888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
+.+.-.++.+.+.+..-.....++-.++.+|...-+.+...+..+..++.-
T Consensus 509 ~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~ 559 (786)
T PF05483_consen 509 SDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ 559 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888889988888888888888777754
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.32 E-value=0.69 Score=49.39 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
+.+.+.|..+|..+.++..-...-..-+..++.+|..+.++|...|-..+..|......+.+...++.+|..=+.+++.=
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~ 173 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSI 173 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555566666666665554545556677777777777777887777777777777777777777777777666666666
Q ss_pred hHHHHHHHHHHHHHH
Q 001620 408 KKDLSSKLVEMEEKL 422 (1043)
Q Consensus 408 Re~L~ekLkElEeel 422 (1043)
...|+-++..+++.+
T Consensus 174 teeLR~e~s~LEeql 188 (193)
T PF14662_consen 174 TEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=2.6 Score=52.59 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHH
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----RED 330 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~r 330 (1043)
++.+|...+..-.+..-.++.+...+.-++++|...+..|...+-+..+. |-.....++.++.. ..+
T Consensus 417 r~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~---------~tt~kt~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 417 RRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD---------ITTQKTEIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------cchHHHHHHHhhhHHHHHHHH
Confidence 33444444444444444455555555555555555555554433332211 11122233333322 444
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001620 331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE-------TDELQAQIRTLEDDKAS 403 (1043)
Q Consensus 331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~E-------leELqeklkeLEeEl~~ 403 (1043)
|..|..+|+|+...-.+. +-+...|..++-.....-..-+.+...|+.. ...++.++.+|+.|...
T Consensus 488 i~qlqarikE~q~kl~~l-------~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKL-------APEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777666544322 2222333333333322222222222233322 33344444555555555
Q ss_pred hhhchHHHHHHHHHHHHHHHHHH
Q 001620 404 LINDKKDLSSKLVEMEEKLLRLH 426 (1043)
Q Consensus 404 Lk~dRe~L~ekLkElEeel~evq 426 (1043)
-..+.+-++.+++++++.+...+
T Consensus 561 k~~eidi~n~qlkelk~~~~~q~ 583 (1118)
T KOG1029|consen 561 KLNEIDIFNNQLKELKEDVNSQQ 583 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 55555566667777776666554
No 107
>PF13514 AAA_27: AAA domain
Probab=96.25 E-value=3.6 Score=54.10 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHH------HHHHHHHhHHhHHHhh
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAE------KIDEVVSKVVNLETSF 373 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaE------kIdeLvnKV~sLE~~I 373 (1043)
...+..+...|..++..- ...+.+++.+ ++..+..++..++..+
T Consensus 821 ~~~l~~~~~~l~~L~~~a--~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 821 EEELEELEAELAELLEQA--GVEDEEELREAEERAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776633 2233444444 3444445555555554
No 108
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.24 E-value=0.73 Score=54.55 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
+.+.|..-.||-+.|+..|...+..|.+|...+..+..++-..-.++.++++..+...
T Consensus 471 i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~ 528 (622)
T COG5185 471 IQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENEREL 528 (622)
T ss_pred HHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445566678888899999999999999999999999998888888888887776655
No 109
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.23 E-value=0.73 Score=52.70 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001620 179 EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQ 258 (1043)
Q Consensus 179 EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~e 258 (1043)
-|..|..++..-+.|++-.+.-.+++..++..+++...++.-...+.-+- +.. ....-.++-..|.+
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~-~~~------------~~~~~~~La~lL~~ 76 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDP-SIP------------PEKENKNLAQLLSE 76 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCc-cCC------------cccchhhHHHHHHH
Confidence 37788899999999999999999999999999999887766443333211 000 00012223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 259 MEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 259 LEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
..+.-..+..+...+..++.+|...++-|+..+.....
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 55555555555556666666666666666665555433
No 110
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.20 E-value=1.7 Score=56.05 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 189 TLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME 260 (1043)
Q Consensus 189 ~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE 260 (1043)
.++++....+.+.++.+..+.+.+.+-+++|.....+ ++...+-...++..++.++..|.++.
T Consensus 1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~---------~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA---------LEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777888888888888888888777776 33233444444445554444444444
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.18 E-value=1.1 Score=60.15 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
..+...-..+..-.........++....+++..+...+...+.++...
T Consensus 786 ~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~a 833 (1353)
T TIGR02680 786 RSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERD 833 (1353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555555433
No 112
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.11 E-value=3.9 Score=50.63 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620 401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT 462 (1043)
Q Consensus 401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~ 462 (1043)
+..|+.+...|+..+.....+....+.-+...+.++.+++.+...+.-.+..++.+..+.+.
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq 767 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQ 767 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777788888888888888888899999999999999999999998776665443
No 113
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.04 E-value=6.6 Score=49.54 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhhhccchHHHHHHHHHhhhhhhccCCCCCccccccCCCCCCCcccchhhhccCCCCCCCChhHHHHhh
Q 001620 734 NDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRM 813 (1043)
Q Consensus 734 ~~e~~~~irELk~an~~Kd~eI~sLr~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~S~~EeKfR~ 813 (1043)
..++.-||=.||+-.++|-++|--||-.|-.-..-..-. -++ +|..-=.+....+..=.|||.
T Consensus 585 ~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvA-----Lan------------LKsKYE~EK~~v~etm~kLRn 647 (717)
T PF09730_consen 585 KEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVA-----LAN------------LKSKYENEKAMVSETMMKLRN 647 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH------------HHHHHhhhhhhHHHHHHHHHH
Confidence 456677899999999999999999998876532211000 000 000000001113455579999
Q ss_pred hHHHHHHHhHHHH-HH--hhhhhhHHHhhhhhHHHHHHHHhh
Q 001620 814 DIDELLEENLDFW-LR--FSASFHQIQKFDTEVKDLKNDISK 852 (1043)
Q Consensus 814 ~ID~lLEENL~Fw-lr--FSts~hqiQkFqt~~~dLq~el~k 852 (1043)
+.=+|=|.==.|= || |.+ +-..|.|.+++||..|.-
T Consensus 648 ELK~LKEDAATFsSlRamFa~---RCdEYvtQldemqrqL~a 686 (717)
T PF09730_consen 648 ELKALKEDAATFSSLRAMFAA---RCDEYVTQLDEMQRQLAA 686 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 9999999988884 33 555 456799999999999986
No 114
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.04 E-value=0.82 Score=52.12 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=52.5
Q ss_pred HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 001620 363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH 426 (1043)
Q Consensus 363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq 426 (1043)
..++..+..++..+...|+.++.++++++.++..+...+..+......+..+|.+++..+...+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777788888888888888888888888888888888888888888888888887776553
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.02 E-value=6 Score=51.05 Aligned_cols=7 Identities=43% Similarity=0.078 Sum_probs=2.6
Q ss_pred hhhcccc
Q 001620 909 RCSSLSN 915 (1043)
Q Consensus 909 R~~sLc~ 915 (1043)
+|+.+-.
T Consensus 776 ~l~~~~~ 782 (908)
T COG0419 776 ILSKLSL 782 (908)
T ss_pred HHHHHhc
Confidence 3333333
No 116
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.98 E-value=0.0018 Score=80.21 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl 418 (1043)
.+...++.+........+.+..+..++..+...+..|+.++..|.....++...+..+
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~ 397 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEAL 397 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555554444444444444433
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.93 E-value=0.32 Score=49.61 Aligned_cols=123 Identities=21% Similarity=0.228 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 001620 336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL 415 (1043)
Q Consensus 336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekL 415 (1043)
.++++-.-...+....|.-|...++..+...-.+........+.|..|..++..+...++.|+.++..|+.++..|...+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555566666667777777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 416 VEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 416 kElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
..+..++.++..++.++..-+..+......+......-..+|+
T Consensus 90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777766665555554444444444444443
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.92 E-value=2.8 Score=47.86 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS 431 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es 431 (1043)
|.|.......+-..|+.|...++..++...+...+|..|..++-.|+..+..+..+.++|...|....+-...+..-+..
T Consensus 201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~e 280 (306)
T PF04849_consen 201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQE 280 (306)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777778888888888888888888888888888888888888888888888888887777766666555555
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHH
Q 001620 432 VEDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 432 Ve~e~~~L~srftEa~~~L~eLs 454 (1043)
++.+-.-...-+.++..++..++
T Consensus 281 lqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 281 LQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554444444555555554443
No 119
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.89 E-value=9.9 Score=50.28 Aligned_cols=202 Identities=10% Similarity=0.099 Sum_probs=109.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc
Q 001620 234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE 313 (1043)
Q Consensus 234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe 313 (1043)
...+.+.+...+..++...++.+.............+...-..+.++...+..++..+......-.. +.. +.
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~--l~~------a~ 174 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTP--LAQ------AQ 174 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCc--ccH------HH
Confidence 3455555555555555555555555555554444444444444477888888888777554222111 110 00
Q ss_pred cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620 314 SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393 (1043)
Q Consensus 314 IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek 393 (1043)
.-.+ ..+...+..++..+..+-..++.+.+=..-+.|-+.-++.-++..+...++.|++.|.+-.+...+
T Consensus 175 ~~~l----------qae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~ 244 (1109)
T PRK10929 175 LTAL----------QAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALE 244 (1109)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 222333444444444443344444444455555556666666666666666666655544444222
Q ss_pred HHHHH-H-------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 394 IRTLE-D-------DKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 394 lkeLE-e-------El~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
..+.. + .+..+-+.+..|..+|...-++.+.+......+..+...+...+..+...|+-|
T Consensus 245 ~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 245 STELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 1 133333557777788888888888887777777777777777777666666544
No 120
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1 Score=56.38 Aligned_cols=203 Identities=12% Similarity=0.104 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhh
Q 001620 241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDID 320 (1043)
Q Consensus 241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee 320 (1043)
-+..+..++.+|......|+-+.+.+.+++.........+.+.+..|+.+++....-..+ + ++.....+-.+++
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~----~--~q~~e~~~t~~ee 738 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRD----L--LQGAEASKTQNEE 738 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh----H--HhHHHhccCChHH
Confidence 344455677888888888888999999999988888888999999999888754322211 0 1111222222233
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCCCccc-------cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620 321 VVRTAQDREDLESLREKIKEQLEFGSSGSL-------TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393 (1043)
Q Consensus 321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~l-------sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek 393 (1043)
+..+..+.+.++-..+++.. .+..+...+..+.+..-++-.....++ +|-++..++.++..+
T Consensus 739 ----------l~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qe-qv~El~~~l~e~~~~ 807 (970)
T KOG0946|consen 739 ----------LNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQE-QVIELLKNLSEESTR 807 (970)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHH-HHHHHHHhhhhhhhH
Confidence 33333333333322221211 223333333434444444444444443 444444448888888
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 394 IRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL-------NRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 394 lkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l-------~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
+.+++.++..++.+...+..++.++-..+.++... ...++.++.+++.++......|..+.+++.|.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 88888888888888888888877777777665443 33444444445555544444555555554443
No 121
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.82 E-value=6.6 Score=47.66 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE----LQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHD 427 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE----LqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~ 427 (1043)
..+|..+.+.+.+.+..|+..|.....++..++..+.. ++...++++.-+..+... -.+++--..++..
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~e~~l~~~el~~ 348 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-------EAELRLYYQELYH 348 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHH
Confidence 56667777777777777766666555555555444333 222223333322222222 2222233334444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 428 LNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 428 l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
..+.+..+.+.+..+..+-..+|.-|...|.+
T Consensus 349 ~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 349 YREELSRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666677777677777777666654
No 122
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.79 E-value=1.7 Score=46.73 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
.+..++.+..+.-++++++..+..+++...-...++..+.+..-..+.
T Consensus 44 ~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~ 91 (205)
T KOG1003|consen 44 SERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLV 91 (205)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555555555555555544443
No 123
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.78 E-value=2 Score=52.68 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=35.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhh-------cCChHHHHHHHhhccchHH-HHHHHHHHHHHHHH
Q 001620 24 KWLEQNLQDLEEKVAYTLKLIEE-------DGDSFAKRAEMYYKKRPEL-ISFVEEAYRAYRAL 79 (1043)
Q Consensus 24 ~wL~~~l~dmd~kvk~~l~li~e-------d~dsfakraemyy~kRpeL-i~~vee~~r~Yr~L 79 (1043)
-|....|..+...+.+-..-|.. .-+.|+.+-.-|-+.=|+. ..+|--+-.+|++=
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~E 74 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSE 74 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 48888888777777766666653 2356777777566666654 34555555666653
No 124
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=2.4 Score=47.52 Aligned_cols=178 Identities=15% Similarity=0.249 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 208 YWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESL 287 (1043)
Q Consensus 208 l~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesL 287 (1043)
|..-...++++++++..+|.+ |.++...|.++..++.....+++.+...|..+..+|+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~e--------------------i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNE--------------------IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777766555 334455555555555555555555555555555555555
Q ss_pred HHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHH------HHHHHHhcCCCccccHHHHHHHHHH
Q 001620 288 KHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLRE------KIKEQLEFGSSGSLTVTEMAEKIDE 361 (1043)
Q Consensus 288 k~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~------kInEl~eeke~a~lsV~ELaEkIde 361 (1043)
+..|..-.. .| ..|++.+.. =|.-++..+ ++.|+-.++.
T Consensus 93 ~~~I~~r~~-------------------~l----------~~raRAmq~nG~~t~Yidvil~Sk-----SfsD~IsRvt- 137 (265)
T COG3883 93 KENIVERQE-------------------LL----------KKRARAMQVNGTATSYIDVILNSK-----SFSDLISRVT- 137 (265)
T ss_pred HHHHHHHHH-------------------HH----------HHHHHHHHHcCChhHHHHHHHccC-----cHHHHHHHHH-
Confidence 555531110 01 223333221 133344433 4455554443
Q ss_pred HHHhHHhHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620 362 VVSKVVNLETSF-SSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ 440 (1043)
Q Consensus 362 LvnKV~sLE~~I-Ssqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~ 440 (1043)
+++.|++....| ..+.+.=.+|+..=..+..++.+|..-..+|......|..+..+...-+..+.......+.+...|.
T Consensus 138 Ai~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 138 AISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 244555554443 2333333444444444444444444444444444555555555555555555555555554444444
No 125
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.73 E-value=5.1 Score=47.84 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 397 LEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 397 LEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
||+....+..+..+|...+.-++.++..+-....-....+.....++. .+++-|..+|+
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~---~E~eklE~el~ 543 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQR---IEIEKLEKELN 543 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH
Confidence 555555566666666666666666666665555555555555544444 44555555554
No 126
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=95.71 E-value=5 Score=45.55 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=101.8
Q ss_pred cccchhhHhhhh-----hhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHH
Q 001620 314 SDRSDIDVVRTA-----QDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD 388 (1043)
Q Consensus 314 IpeLeee~~~l~-----eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~Ele 388 (1043)
+..|...++-++ .-|.|++.+-+++++.-+... ++.-=++...+|++|-+-+.--+--.+..=..|+||.. |.
T Consensus 230 Ve~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~-~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~a-l~ 307 (371)
T KOG3958|consen 230 VELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHK-ASVEDADTDSKVHELYETIQRWSPIASTLPELVQRLVA-LK 307 (371)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHH-HH
Confidence 334555554443 449999999999999765443 66666788899999999999999999999999999974 88
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 389 ELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 389 ELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
.|++....+-.=+..|..-+..+-..+..=.+-+-.+|.. +...+.++...|.-+...+..|
T Consensus 308 ~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~vqtt---~~qnl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 308 QLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQVQTT---MRQNLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999998888888888888888777777777666553 3445556666666665555544
No 127
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.69 E-value=0.096 Score=65.33 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE 389 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE 389 (1043)
.+++..|..++.+|+..+......+..|..+|+.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555443
No 128
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.62 E-value=4.2 Score=53.73 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 201 YENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDA 280 (1043)
Q Consensus 201 yq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~ea 280 (1043)
....++++..++.++.++++.+..+-.+ +.+..++..-....+....+...++..++......+......|.+.
T Consensus 873 ~~~~l~~~~qle~~~~~l~e~~~~~~s~------~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~ 946 (1294)
T KOG0962|consen 873 IERSLARLQQLEEDIEELSEEITRLDSK------VKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEK 946 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333 3444444444444444444444444444433333333333444433
Q ss_pred HHHH
Q 001620 281 RDKF 284 (1043)
Q Consensus 281 E~el 284 (1043)
...+
T Consensus 947 ~s~l 950 (1294)
T KOG0962|consen 947 VSLL 950 (1294)
T ss_pred HHHH
Confidence 3333
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.57 E-value=3.5 Score=44.24 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620 385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEME 419 (1043)
Q Consensus 385 ~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE 419 (1043)
..+.....+..++..++..|..+...|..+|++.+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555555555555554443
No 130
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.56 E-value=3.8 Score=52.00 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHHHHHhHHhHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620 348 GSLTVTEMAEKIDEVVSKVVNLETSFSSQ-------TALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE 420 (1043)
Q Consensus 348 a~lsV~ELaEkIdeLvnKV~sLE~~ISsq-------ea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe 420 (1043)
++..+.+|..++..+.+....++..+... ..+...++.|+..++.++..|+.++..-+....++..+..++++
T Consensus 629 ~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~ 708 (769)
T PF05911_consen 629 SEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEE 708 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 33455666666666666666555555444 33344456778888889999999988888888888888999999
Q ss_pred HHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHhHHHHHHhhcccCchh
Q 001620 421 KLLRLHDLNRSV-----------EDQNYSFQTHLTEARYNIDHLSHKLKIQKTDE 464 (1043)
Q Consensus 421 el~evq~l~esV-----------e~e~~~L~srftEa~~~L~eLseeL~s~~~~~ 464 (1043)
++.+........ +.++.+--..+++....|..|..+|++..|-.
T Consensus 709 el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~ 763 (769)
T PF05911_consen 709 ELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPE 763 (769)
T ss_pred HHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888887554322 33666777889999999999999999976543
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.50 E-value=2.6 Score=50.16 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFS-------SQTALVQRLRTETDELQAQIRTLEDD 400 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~IS-------sqea~IerLr~EleELqeklkeLEeE 400 (1043)
..++..++.++.++...-....-.|.++..+|+.+...+......+. ..+.....|...+...+..+..+...
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 332 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEAR 332 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555432111122444555555555554433322110 01122344555555555555555555
Q ss_pred HHHhhhchHHHHHHHHHHH
Q 001620 401 KASLINDKKDLSSKLVEME 419 (1043)
Q Consensus 401 l~~Lk~dRe~L~ekLkElE 419 (1043)
+..|......++.++..+-
T Consensus 333 ~~~l~~~~~~~~~~~~~~~ 351 (498)
T TIGR03007 333 VAELTARIERLESLLRTIP 351 (498)
T ss_pred HHHHHHHHHHHHHHHHhch
Confidence 5555555555555544433
No 132
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.87 Score=54.77 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=59.2
Q ss_pred HHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 358 KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNY 437 (1043)
Q Consensus 358 kIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~ 437 (1043)
+=..++-+|..|+.........+.+-+.|++.+......+-+..+.+..+|-.|+.+|++...+-.++=.-...++.++.
T Consensus 101 kE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENI 180 (772)
T KOG0999|consen 101 KEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENI 180 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556667777777777777777777777777777777777777777777777777777666665555555555666655
Q ss_pred hHHHHHHHH
Q 001620 438 SFQTHLTEA 446 (1043)
Q Consensus 438 ~L~srftEa 446 (1043)
+|+...+.+
T Consensus 181 sLQKqVs~L 189 (772)
T KOG0999|consen 181 SLQKQVSNL 189 (772)
T ss_pred hHHHHHHHH
Confidence 555544433
No 133
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.50 E-value=1.8 Score=54.21 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------HHHHHHHHHHhhcccc
Q 001620 247 AALKSCRETLTQMEEEQE---------KSAEEAKIERKRIKD------ARDKFESLKHEFIGNE 295 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere---------~s~eEa~~l~eRI~e------aE~elesLk~el~~LE 295 (1043)
-.+-++++.+.-|.+... .+..==++++++|.+ ..++++.++.++.+.-
T Consensus 528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g 591 (762)
T PLN03229 528 PNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSG 591 (762)
T ss_pred cccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 344455566666665554 122224567778888 8899999999887753
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.43 E-value=0.73 Score=52.51 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 249 LKSCRETLTQMEEEQEKSAEEAKIERKRIKDARD 282 (1043)
Q Consensus 249 IksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ 282 (1043)
.+-.++-+..|++....+..+...+.+.+..+..
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 135
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.39 E-value=4.5 Score=52.06 Aligned_cols=181 Identities=17% Similarity=0.298 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-----HHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-----AALKSC 252 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-----~aIksc 252 (1043)
.++..--.++-.|+.+...+...+..+.+.+--|+.++..+.++|.++.++ +....++.+.+ ..++--
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-------~~~~~~Ie~l~~k~~~v~y~~~ 246 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER-------ERKKSKIELLEKKKKWVEYKKH 246 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccchHhh
Confidence 567777788889999999999999999999999999999999999998655 22233344443 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHH
Q 001620 253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLE 332 (1043)
Q Consensus 253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe 332 (1043)
......+......+..+.+.+.+.+...+.+.+.|+.+... +..+++.+ -..+.
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e-----------------------t~~~~s~~---~~~~~ 300 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE-----------------------TRSKISQK---QRELN 300 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh-----------------------HHHHHHHH---HHHHH
Confidence 44444555555555555555555555555555555543221 11121111 33345
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
....++.+.++. +.++..++..+.++..++..+-...++.|.+.+..|..++..+.+.+
T Consensus 301 e~~~k~~~~~ek-------~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 301 EALAKVQEKFEK-------LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 555556665553 36777888888888888888888888888888888888888877654
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=11 Score=47.28 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhh
Q 001620 244 MAAAALKSCRETLTQMEEEQEKSAE--EAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDID 320 (1043)
Q Consensus 244 ~aE~aIksceEtL~eLEeere~s~e--Ea~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee 320 (1043)
++.+++.+|...+..+.+....-.. ..+....+|......++.|+..+.....-+.. ++++ +.+.+..++
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e-------~~t~gsA~ed~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSE-------METIGSAFEDMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5667777777777766654433222 33444444555555555554444332210000 0111 223333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 321 VVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD 400 (1043)
Q Consensus 321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE 400 (1043)
+.++-++ ++.-+.+=-.++-++..+...+.-|.+..+-+...|..+-..+.-+...|..|+.....+...+..+..+
T Consensus 470 n~kL~~e---l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~e 546 (698)
T KOG0978|consen 470 NQKLLQE---LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKE 546 (698)
T ss_pred HHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence 3333222 1112222222233333333444455555555556666666666666666666666666666666666666
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+..+...-+.++....++...+.-++......+.++..++....++..+|+.+..+.
T Consensus 547 l~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~ 603 (698)
T KOG0978|consen 547 LTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR 603 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666665443
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.29 E-value=0.082 Score=55.83 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
+..+-.+..++.++...+ .+++.++-.+..++..++..+......|..|..++..|+.++..+++++.++...
T Consensus 73 e~~~~~l~~ELael~r~~-------~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSK-------GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc-------ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666665555 4445555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srf 443 (1043)
.+.|++++..+.-.+.-+......++.++..|-.|.
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544443
No 138
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.26 E-value=11 Score=46.57 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHH
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDL 331 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rL 331 (1043)
+...-..++...+-.++..-..||..|+.+++.|+..+..-...... .++|.++.....+..-+..|
T Consensus 228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~-----------~~~~~i~~~~~~L~~kd~~i 294 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL-----------AKIDDIDALGSVLNQKDSEI 294 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------ccCCchHHHHHHHhHHHHHH
Confidence 44555556667777777788888888888888888888655443333 45666665544444433333
No 139
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.17 E-value=1.6 Score=55.78 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620 235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES 314 (1043)
Q Consensus 235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI 314 (1043)
+.+..++.-.++..+.+|.++|..|+..+....-++..+.+|- ....+|+-|.... +.+.|..
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~---------~~v~y~~------- 245 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKK---------KWVEYKK------- 245 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc---------cccchHh-------
Confidence 3344455555666666777777776666666655555555442 2233333333222 1111211
Q ss_pred ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620 315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI 394 (1043)
Q Consensus 315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl 394 (1043)
-+.+. ++......-+...+..+.++.........+|...+++.-+++..+-..+-.+.+.+...-..+.+.+.++
T Consensus 246 --~~~ey---~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v 320 (1072)
T KOG0979|consen 246 --HDREY---NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEV 320 (1072)
T ss_pred --hhHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1112223333344444444333233333444444444444444444444444444444444555555555
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 395 RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVE 433 (1043)
Q Consensus 395 keLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe 433 (1043)
..+...+..|+......+..+..+.+.+...|+..+.++
T Consensus 321 ~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 321 EEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 555555555555555555666666666666665555443
No 140
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.15 E-value=2.7 Score=53.31 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 210 DIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKH 289 (1043)
Q Consensus 210 eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~ 289 (1043)
+.++...+++.++..+..+ +....+....+..+|......|.+|.+....+..++..+..|++-++.+...|+-
T Consensus 82 e~e~~~~~le~~l~e~~~~------l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 82 EWEKIKSELEAKLAELSKR------LAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555554444 3344444445556788888899999999999999999999999999999999998
Q ss_pred hhccccCCC
Q 001620 290 EFIGNEGSK 298 (1043)
Q Consensus 290 el~~LEaek 298 (1043)
++.-+..++
T Consensus 156 e~~~~~kel 164 (769)
T PF05911_consen 156 ELHVLSKEL 164 (769)
T ss_pred HHHHHHHHH
Confidence 887665544
No 141
>PRK09039 hypothetical protein; Validated
Probab=95.12 E-value=0.46 Score=54.68 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001620 331 LESLREKIKE 340 (1043)
Q Consensus 331 Le~Ld~kInE 340 (1043)
|..|..+|++
T Consensus 55 L~~L~~qIa~ 64 (343)
T PRK09039 55 LDRLNSQIAE 64 (343)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 142
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.04 E-value=2.5 Score=52.33 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.++++..+...-|-...+++..+.+...+++...+....+.++.+..+-.+ ++..+-.....+.
T Consensus 98 ~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e----------------~~~k~ae~~~lr~ 161 (716)
T KOG4593|consen 98 AEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLRE----------------KEDKLAELGTLRN 161 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
Confidence 455555555444444445555555555555544444444444443333222 2222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
++......+..++.-...++..+...+..+++++
T Consensus 162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~ 195 (716)
T KOG4593|consen 162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKEL 195 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555555544444
No 143
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.93 E-value=4.9 Score=49.13 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001620 328 REDLESLREKIKEQLEFG 345 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eek 345 (1043)
...++++...|..+...-
T Consensus 279 ~~~l~d~~~~l~~~~~~l 296 (563)
T TIGR00634 279 LTEVEEATRELQNYLDEL 296 (563)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 445555555555554433
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.86 E-value=1.7 Score=46.44 Aligned_cols=112 Identities=12% Similarity=0.183 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSCRETLTQM 259 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksceEtL~eL 259 (1043)
..|.-.|..++.....++..+-.+......++.++.++...+..++.... ..+. ..+.-+..+-..+..|+..+..|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~--~Al~~g~edLAr~al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE--LALAAGREDLAREALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666667777777777777777777777777777766521 1111 12233444556778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
+............+...|..++.++..++.....+
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888777544
No 145
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.83 E-value=8 Score=42.77 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
..+..|-..|..+..+.......+.....++..++..+..+..++..|+.+ +.++ .....
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k-------------~~~~-------~~~~~ 76 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEK-------------ATKV-------SRKAQ 76 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-------HHHHH
Confidence 444455555555555555555555555555555555555554444444333 2222 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
.+...-......+..+...|..+...|..|-..+..+..
T Consensus 77 ~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 77 QLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555555566666666666666666666666655533
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.77 E-value=0.22 Score=52.64 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
.++..++.++.+....++.+.+++.+|+.+|..++..+..|
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 147
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.75 E-value=9.4 Score=44.83 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYEN-------WLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALK 250 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~-------~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIk 250 (1043)
.|+...+.++...++|++++.++++. +..++..++.....+|.+...++.. -.+...|...+.+++.
T Consensus 88 tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q------~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 88 TELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ------AQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 55566666666666666666555543 3444555555555555555555443 2333333333334444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001620 251 SCRETLTQMEEEQEKSA 267 (1043)
Q Consensus 251 sceEtL~eLEeere~s~ 267 (1043)
++.+..-.|...++.+.
T Consensus 162 ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 162 QLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 148
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.67 E-value=4.3 Score=51.01 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHH------------HHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 205 LAKYWDIEEQIKELQ------------QRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS 266 (1043)
Q Consensus 205 lekl~eLE~qISeaQ------------eeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s 266 (1043)
..++..|+.+|+.+. +.|..|.++|+ +.+-.+..+..++++|..|.++...+
T Consensus 435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d----------~e~S~A~~~~gLk~kL~~Lr~E~sKa 498 (762)
T PLN03229 435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEID----------LEYTEAVIAMGLQERLENLREEFSKA 498 (762)
T ss_pred HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHH----------HHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence 345555555555553 45555555532 44555567777778888887777665
No 149
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.62 E-value=20 Score=47.36 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 001620 108 MDDDDED 114 (1043)
Q Consensus 108 ~~ddd~~ 114 (1043)
+.++++.
T Consensus 500 L~~GePC 506 (1047)
T PRK10246 500 LQAGQPC 506 (1047)
T ss_pred CCCCCCc
Confidence 4555454
No 150
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.57 E-value=19 Score=46.03 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSK 414 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ek 414 (1043)
...+.+.+|...+.....+-.+++...++..+.+..++.|++.|-.+-..|+..
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555444444444433
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.50 E-value=3.2 Score=44.59 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.-|..|+++|+.+...-.........+......|..-+..++.++..|+.. +. .-..-...+.....++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~------L~----~y~kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ------LK----NYEKDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHH
Confidence 667777777777777666666666666666666666677777777776655 32 33344557777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
.++.++..+.-+...+..|+..++.+...|...|.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999988885
No 152
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.35 E-value=4.9 Score=49.10 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 386 ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL---NRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 386 EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l---~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
.+++++.++..+..-+.-...+.+++...+.+++.++..+... ...++.++..++.++..+...|...+.+.
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444446777777777777777766553 44445555555555555555555554433
No 153
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.27 E-value=6.6 Score=46.01 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
...+-+|.+...+|..+...|+.-.++|..-.+.+-+|+....-||.+.+.|
T Consensus 227 Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 227 QQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544444444444444433
No 154
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.20 E-value=3.3 Score=48.88 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=40.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srf 443 (1043)
.+..-.+-++.|+.|+.+++-++...-. ++.-...|+. .+..+++.++.+++--+..+..|+..|+...
T Consensus 365 fq~ekeatqELieelrkelehlr~~kl~----~a~p~rgrsS--aRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHLRRRKLV----LANPVRGRSS--AREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH----hhccccCchh--HHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence 5555566677777777777666544333 2323333333 5566667777777666666666666555443
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.20 E-value=10 Score=43.45 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 001620 177 LKEIDKLQKQILTLQTDKE 195 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKE 195 (1043)
..++..|+..+..|+++..
T Consensus 80 ~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444
No 156
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.15 E-value=18 Score=44.08 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 381 QRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 381 erLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
..+..+|.++...+..+-+....-.--=+.|+..+..++.-+..+++....+...+..|+.--.+|...+..+..+|+..
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443334445566666666666666666666666677777766677777777777777655
Q ss_pred C
Q 001620 461 K 461 (1043)
Q Consensus 461 ~ 461 (1043)
+
T Consensus 430 k 430 (570)
T COG4477 430 K 430 (570)
T ss_pred H
Confidence 4
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.97 E-value=5 Score=46.20 Aligned_cols=81 Identities=15% Similarity=0.295 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHhH
Q 001620 378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL-------NRSVEDQNYSFQTHLTEARYNI 450 (1043)
Q Consensus 378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l-------~esVe~e~~~L~srftEa~~~L 450 (1043)
.+++.++..+..|+--++.+-+|+.+|..+|+-.+.+...+-.++.-+=.- +..+-.++.=|+.++..+..+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777777777777777777777777777776666544222 5556666666777777777666
Q ss_pred HHHHHhhc
Q 001620 451 DHLSHKLK 458 (1043)
Q Consensus 451 ~eLseeL~ 458 (1043)
.-+...|.
T Consensus 213 ~l~k~~i~ 220 (319)
T PF09789_consen 213 ELLKQTIN 220 (319)
T ss_pred HHHHHHHH
Confidence 66655554
No 158
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.85 E-value=24 Score=44.26 Aligned_cols=168 Identities=15% Similarity=0.229 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 200 SYENWLAKYWDIE----EQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERK 275 (1043)
Q Consensus 200 qyq~~lekl~eLE----~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~e 275 (1043)
.+.....++.+|+ .++++..++|+.|+.. +.+.+...-.+-..|...+..+..|++....-.+-++....
T Consensus 216 KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q------~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~ 289 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQ------LKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNE 289 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555555554 5678888888888887 77777777778888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHH
Q 001620 276 RIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEM 355 (1043)
Q Consensus 276 RI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~EL 355 (1043)
..+.+..++..++..+-....-. ..| +..++.....|-.+..++
T Consensus 290 ~qe~L~~eL~~~K~slq~~~~tq----------------~~l----------e~~lq~~~k~~~qlt~eK---------- 333 (786)
T PF05483_consen 290 EQEHLLQELEDIKQSLQESESTQ----------------KAL----------EEDLQQATKTLIQLTEEK---------- 333 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------------HHH----------HHHHHHHHHHHHHHHHhH----------
Confidence 88888888877776664321100 001 333444445555544444
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK 409 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe 409 (1043)
...|+++-.-.+.....+.+.+..|-.|..-+.--+.+++.+++++..|.-+-.
T Consensus 334 e~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLq 387 (786)
T PF05483_consen 334 EAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQ 387 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 123444444444455555555555555555555555555555555554444333
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.81 E-value=5.4 Score=42.82 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
.+..|.+....+.+.......++.+...++..++..+.
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 160
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.78 E-value=8.4 Score=45.97 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHH
Q 001620 257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLE 332 (1043)
Q Consensus 257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe 332 (1043)
.....-++-...++.....++..++.++..++.+.+-.-....+ .....+..+..+...++.+ +.++.
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~l~~~~a~~~ 228 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEG--------DYYSEISEAQEELEAARLELNEAIAQRD 228 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888888888888888888765432111000 0112333333333333322 33333
Q ss_pred HHHHHHHHHHhcC-CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001620 333 SLREKIKEQLEFG-SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRT 396 (1043)
Q Consensus 333 ~Ld~kInEl~eek-e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklke 396 (1043)
.+...+......- ...+..+..+..++.++..++..+...+...--.+..++.+++.++..+..
T Consensus 229 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 229 ALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 3333333211000 011234557778888888888888888888888888888888888887654
No 161
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.64 E-value=0.92 Score=58.31 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQ-------RLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~Ie-------rLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
..++++|+++.+++.+++..|...++..- .|..+++.++..+..-..++..+...-..++..|++.+.-+...
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~ 523 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQ 523 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620 426 HDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK 461 (1043)
Q Consensus 426 q~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~ 461 (1043)
......+..++..|+....++...+..|-.+|....
T Consensus 524 ~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 524 EKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999888886643
No 162
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.64 E-value=26 Score=44.02 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 372 SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 372 ~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
.+....+.++++..+-.-+...+..|-......+.+-..+..++..+-+++..+..+++.|+.-..-+..
T Consensus 385 klk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 385 KLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3333333333333333333444444444444555555555566666666666666666666554333333
No 163
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.62 E-value=16 Score=41.66 Aligned_cols=109 Identities=13% Similarity=0.274 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620 350 LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 350 lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~ 429 (1043)
+.++-+.....+.+-.+-.++.+.-.-++.+.+.-..=+-+++++..|+.+..-|+..-++...+..--+.-+.-+|+-+
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455666777788888888888888888888888888888888877777777776666666555444443333333322
Q ss_pred ----HHHHHH----HhhHHHHHHHHHHhHHHHHHhhc
Q 001620 430 ----RSVEDQ----NYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 430 ----esVe~e----~~~L~srftEa~~~L~eLseeL~ 458 (1043)
..++.+ .--|..+--++.....+|.+.++
T Consensus 259 ~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 259 QDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 222222 22366667777777777777665
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.58 E-value=12 Score=40.07 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhh
Q 001620 241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDID 320 (1043)
Q Consensus 241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee 320 (1043)
=..++...|..+++.|.+++............+..++..++..+..+......
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~--------------------------- 76 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL--------------------------- 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 33778888888888888888888888888888888888877777777654420
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 321 VVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD 400 (1043)
Q Consensus 321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE 400 (1043)
-+..+ -+.-..+...++..+.+.+..++..+..+...+..|+..+..++.++.++...
T Consensus 77 --------------------Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 77 --------------------ALAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred --------------------HHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00011122333455566666666666666666666666666666666666666
Q ss_pred HHHhhhc
Q 001620 401 KASLIND 407 (1043)
Q Consensus 401 l~~Lk~d 407 (1043)
+..|...
T Consensus 135 ~~~l~ar 141 (221)
T PF04012_consen 135 REELKAR 141 (221)
T ss_pred HHHHHHH
Confidence 5555443
No 165
>PF13166 AAA_13: AAA domain
Probab=93.40 E-value=18 Score=45.01 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=6.9
Q ss_pred hHHHHHHHHhhhHHH
Q 001620 705 ILAEYTTVLRNYKEA 719 (1043)
Q Consensus 705 LL~eYtsvLrnYke~ 719 (1043)
..++|..++...++.
T Consensus 612 ~~~~Y~~l~~~l~~~ 626 (712)
T PF13166_consen 612 IKSEYHYLFKELYDF 626 (712)
T ss_pred CcHHHHHHHHHHHHH
Confidence 345555444444443
No 166
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.28 E-value=11 Score=41.04 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ 326 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e 326 (1043)
..+...+.+|.-|. +.......++.+...|..+-.++..+..++..+......+..-+.. -.+++|+..+.....
T Consensus 18 ~~i~~l~~al~~L~-~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~----~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 18 ALIQDLQQALSFLD-EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILAN----LSLEELEQRLSQEQA 92 (240)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCccc----CCHHHHHHHHHHHHH
Confidence 45555666666654 4566788888999999999999999999998885541111111111 123334444333322
Q ss_pred h----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 327 D----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETS--FSSQTALVQRLRTETDELQAQIRTLEDD 400 (1043)
Q Consensus 327 E----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~--ISsqea~IerLr~EleELqeklkeLEeE 400 (1043)
. ..++......|....-.-+-+-..+.+....++++.+....+-.. -.-..++.-.|..++.-+..++..++-+
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 444455555554444333223333344444444444443332100 1223555666666666666666666666
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620 401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF 439 (1043)
Q Consensus 401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L 439 (1043)
+...-.-.+=++.+...+..++..++..+..++..++..
T Consensus 173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544444444444445555555555555555554443
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.23 E-value=5.3 Score=40.55 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
...+..+..=|..++... ..-.+..+.+..++..++..+..++..+.+|+..+++++..+..++.....|...
T Consensus 30 ~~~~~~vin~i~~Ll~~~-------~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQR-------DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred cccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677776644 4556667888889999999999999999999999999999999999998999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
...+...++...+++.+++..++.+..+-.+--.+. .-+|+.|...|
T Consensus 103 ~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk---e~E~~kLk~rL 149 (151)
T PF11559_consen 103 LKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK---EREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 889999999998888888888887777644333222 24555555444
No 168
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.20 E-value=4.4 Score=44.41 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhcCC-CccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 328 REDLESLREKIKEQLEFGS-SGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke-~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
....+.+..+|.+..+... .....+..+..++..+..++..++..|..+...|+..+..+++++..+......+.....
T Consensus 33 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~ 112 (302)
T PF10186_consen 33 KEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQD 112 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666665110 022355777777888888888888888888888888888888887777777776664444
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 407 dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
-.......+.++...+...+..+..+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 113 LVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555444444444444
No 169
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.19 E-value=10 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKS 199 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~s 199 (1043)
.++.||+.++..|..|.+....
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888877643
No 170
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.17 E-value=4.2 Score=46.47 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHH-HHHHHHHHHHHH
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAA-ALKSCRETLTQM 259 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~-aIksceEtL~eL 259 (1043)
..|+..+..|+.+-..++.++...-.+...|...+..+....-.++.. +..-+. --+.+-..|..|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~-------------aEqEEE~isN~LlKkl~~l 89 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK-------------AEQEEEFISNTLLKKLQQL 89 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 677888888888877777777777666666666666555555555433 222222 224455667777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620 260 EEEQEKSAEEAKIERKRIK-DARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI 338 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~-eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI 338 (1043)
..+.+.+.-.+....+.+. .+..++..|..+-..++..++. +.+--+..|..+|
T Consensus 90 ~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~-------------------------EqE~~V~kL~k~i 144 (310)
T PF09755_consen 90 KKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ-------------------------EQEYLVNKLQKKI 144 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHHHHHHHHHH
Confidence 7777777666666655554 3666666666666544332222 0133344444555
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 001620 339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFS-SQTALVQRLRTETDELQAQIRTLEDDKASL------------- 404 (1043)
Q Consensus 339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~IS-sqea~IerLr~EleELqeklkeLEeEl~~L------------- 404 (1043)
..+.-+. .......+.|-..+++||.... .|+..|++|-..++.|.+.-+.|+..+..=
T Consensus 145 ~~Le~e~-------~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~ 217 (310)
T PF09755_consen 145 ERLEKEK-------SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNV 217 (310)
T ss_pred HHHHHHH-------HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhh
Confidence 5442222 2234455677777888887775 466778888888888887777777776521
Q ss_pred ---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 405 ---INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 405 ---k~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
.+....+...++.+..++.+++..+...+.+...-..++.+
T Consensus 218 ~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~ 261 (310)
T PF09755_consen 218 SEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQ 261 (310)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224445556666666666666555555554444444443
No 171
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.13 E-value=4.2 Score=42.51 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=103.0
Q ss_pred cccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhh-hHHHHHHHHHHHHHHH
Q 001620 314 SDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSS-QTALVQRLRTETDELQ 391 (1043)
Q Consensus 314 IpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISs-qea~IerLr~EleELq 391 (1043)
|..-..++-.+.+. ..+++.+..+|.+....-......|+.|...--.+-.+.+..-..+.. .++.|...=.+...++
T Consensus 11 ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ 90 (159)
T PF05384_consen 11 IESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQ 90 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHH
Confidence 33344455555444 555555555555554433222233455555555555666655555543 3577888888899999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620 392 AQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH 455 (1043)
Q Consensus 392 eklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse 455 (1043)
-++.-+.+.-..|+..|+.|...|+.+..-+.+...++..|..=++-|...+..+.+.|.++..
T Consensus 91 ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 91 VRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888999999999999999999999999999999999999999999999998888753
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.09 E-value=3.8 Score=42.02 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF 439 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L 439 (1043)
+.+.++|-+|+..+.-.+..-..+..+.+-.++.+.+|+.++..+...+..|...|..+..+...+-...+..+.++..|
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhHH
Q 001620 440 QTHLTEARYNID 451 (1043)
Q Consensus 440 ~srftEa~~~L~ 451 (1043)
.++...+..-|.
T Consensus 100 E~~~~~~~~~l~ 111 (140)
T PF10473_consen 100 ESLNSSLENLLQ 111 (140)
T ss_pred HHHhHHHHHHHH
Confidence 444333333333
No 173
>PRK10698 phage shock protein PspA; Provisional
Probab=93.08 E-value=6.9 Score=42.72 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSC 252 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksc 252 (1043)
.+++.=..-|.--|..++.....++..+-+++..-..+++++..++..+..++... ...+. ..+.-+..+=..-..|
T Consensus 20 dkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA--~~Al~~G~EdLAr~AL~~K~~~ 97 (222)
T PRK10698 20 EKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA--ELALRKEKEDLARAALIEKQKL 97 (222)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHH
Confidence 34443344555566667777777777777777777778888888888887776652 11111 1111112222445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
.+.+..|+..+......+..+...+..++.++..++..-.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888888877777777776554
No 174
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=92.79 E-value=38 Score=44.39 Aligned_cols=211 Identities=16% Similarity=0.246 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 209 WDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 209 ~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
.+|+.+|..+..++..||.- -.-.++-+.+.-...-++-|...-..|..|+..--.-....+..-..+..+..+++=|+
T Consensus 1066 ~eLReQIq~~KQ~LesLQRA-V~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLR 1144 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQRA-VVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLR 1144 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777632 22335655666666666777777777777776665555666666667777777777777
Q ss_pred HhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH----
Q 001620 289 HEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVS---- 364 (1043)
Q Consensus 289 ~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvn---- 364 (1043)
++-.++....+. + .-+.++.-|.+|+.+.-+|... -+.+++..|..|++
T Consensus 1145 nEK~Rmh~~~dk--V----------------DFSDIEkLE~qLq~~~~kL~dA---------yl~eitKqIsaLe~e~PK 1197 (1439)
T PF12252_consen 1145 NEKIRMHSGTDK--V----------------DFSDIEKLEKQLQVIHTKLYDA---------YLVEITKQISALEKEKPK 1197 (1439)
T ss_pred hHHHhhccCCCc--c----------------cHHHHHHHHHHHHHhhhhhHHH---------HHHHHHHHHHHHHhhCCC
Confidence 777666554433 1 1122223366677777776654 34778888888887
Q ss_pred hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Q 001620 365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLED--DKASLINDKKDLSSKLVEMEEKLL-----RLHDLNRSVEDQNY 437 (1043)
Q Consensus 365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEe--El~~Lk~dRe~L~ekLkElEeel~-----evq~l~esVe~e~~ 437 (1043)
+..++..+|++..+.+..++.-- +++++.=.. |--.| +|-+.|+.+|+.+-.-+. .++..... .+..
T Consensus 1198 nltdvK~missf~d~laeiE~Lr---nErIKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnq--me~~ 1271 (1439)
T PF12252_consen 1198 NLTDVKSMISSFNDRLAEIEFLR---NERIKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQ--MEVK 1271 (1439)
T ss_pred chhhHHHHHHHHHhhhhHHHHHH---HHHhhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhh
Confidence 34555666665555444443311 122222111 11123 666666666666554332 22222222 2355
Q ss_pred hHHHHHHHHHHhHHHH
Q 001620 438 SFQTHLTEARYNIDHL 453 (1043)
Q Consensus 438 ~L~srftEa~~~L~eL 453 (1043)
+++..-.++..+|+.|
T Consensus 1272 tf~~q~~eiq~n~~ll 1287 (1439)
T PF12252_consen 1272 TFEEQEKEIQQNLQLL 1287 (1439)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 6666667777777777
No 175
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.75 E-value=37 Score=43.25 Aligned_cols=50 Identities=30% Similarity=0.292 Sum_probs=33.4
Q ss_pred hhHHHHHHHhHHHHHHhhhhhhHHHhhhhhHHHHH----HHHhhhhhHHHHhhh
Q 001620 813 MDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLK----NDISKLVSKLEEKQR 862 (1043)
Q Consensus 813 ~~ID~lLEENL~FwlrFSts~hqiQkFqt~~~dLq----~el~k~~~~l~~~~~ 862 (1043)
.|+..|.|+||-.===.||==-||=-+.|=.+--| .=|++|.+|.+..|.
T Consensus 583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~ 636 (717)
T PF09730_consen 583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKA 636 (717)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 47788999999766668888888887777555433 234565555554443
No 176
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.74 E-value=6.4 Score=43.17 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH--------hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVS--------KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK 401 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvn--------KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl 401 (1043)
++-.+...|..+.... +.+..+|+++.+ .+..+..++......+..++..++.++.++......+
T Consensus 21 ~L~~~~~~l~~~~~~~-------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 21 RLLELRSELQQLKEEN-------EELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777766655 555555666554 5555566666666666666666666666666666555
Q ss_pred HHhhhchHHHHHHHH
Q 001620 402 ASLINDKKDLSSKLV 416 (1043)
Q Consensus 402 ~~Lk~dRe~L~ekLk 416 (1043)
..++.........+.
T Consensus 94 ~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 94 EELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444444
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.59 E-value=4.4 Score=43.60 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620 384 RTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNR--------SVEDQNYSFQTHLTEARYNIDHLSH 455 (1043)
Q Consensus 384 r~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~e--------sVe~e~~~L~srftEa~~~L~eLse 455 (1043)
+..+..++.++..++.++..|+-+.+.|..++..++.+++++.+... ...-++.-|+..+..+...++....
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666667677777777777666666666666654433 3333444555555555555555555
Q ss_pred hhcc
Q 001620 456 KLKI 459 (1043)
Q Consensus 456 eL~s 459 (1043)
+|.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5544
No 178
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.54 E-value=45 Score=43.81 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhh
Q 001620 72 AYRAYRALAERYDHI 86 (1043)
Q Consensus 72 ~~r~Yr~Laeryd~~ 86 (1043)
+-|--.||+++-.|+
T Consensus 326 LGRVInALVe~s~HI 340 (1041)
T KOG0243|consen 326 LGRVINALVEHSGHI 340 (1041)
T ss_pred HHHHHHHHHccCCCC
Confidence 456666777765553
No 179
>PRK11281 hypothetical protein; Provisional
Probab=92.51 E-value=33 Score=45.70 Aligned_cols=128 Identities=8% Similarity=-0.032 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhh
Q 001620 245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRT 324 (1043)
Q Consensus 245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l 324 (1043)
++..+.+.+..+.+.+........++.....+-+++...+.+....+..+..++.++.. +.-+ +
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~--------~~~~--------l 189 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKV--------GGKA--------L 189 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCCc--------C
Confidence 44555555555555555555555555556666666666666666655555443333111 0000 1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH
Q 001620 325 AQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL 390 (1043)
Q Consensus 325 ~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL 390 (1043)
+ +.+...+..+..-+.....+......-....++-+.-+..-+..++..++.+|..|+..+..+
T Consensus 190 ~--~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 190 R--PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223344555544444443333333333333344444444444445555555555555555543
No 180
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.47 E-value=3.2 Score=43.32 Aligned_cols=62 Identities=16% Similarity=0.383 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
.+..+..+++++.+++.++...+.........++......++++..+......+..+-.++.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666666665555555555555555555555555555
No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.42 E-value=1.6 Score=47.52 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK 409 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe 409 (1043)
+-..++.-++-+..-. .+.||.+..++|.+|.-.+...-...-...++|..+.++++++++.|+.++..|.+.+.
T Consensus 113 ~nAlvRAGLktL~~v~-----~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 113 KNALVRAGLKTLQRVP-----EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHhccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666777776655 35688888888888776665555555555566666666666666666666665555544
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001620 410 DLSSKLVEMEEKLLRLHDL 428 (1043)
Q Consensus 410 ~L~ekLkElEeel~evq~l 428 (1043)
.|-.++..++.+.+++..-
T Consensus 188 ~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 188 KLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hchhHHHHHHHHHHHhccc
Confidence 4444444444444444333
No 182
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.39 E-value=25 Score=44.44 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----H
Q 001620 253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----R 328 (1043)
Q Consensus 253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E 328 (1043)
.........-..-+..++..+..++..++.++..++....-... ....+.. ..+..++.++...+.+ +
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~--~~~~~~~------~~L~~l~~ql~~a~~~~~~a~ 257 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG--NNATLAT------QQLAELNTELSRARANRAAAE 257 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--CCccchH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677778888888888999999999887654422 1111100 2344445554444433 4
Q ss_pred HHHHHHHHHHHHHHhcC---------CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620 329 EDLESLREKIKEQLEFG---------SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR 395 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~eek---------e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk 395 (1043)
.+++.+...+..-.... ......+.+|..++.++..+++.+.......--.|..++.++++++..+.
T Consensus 258 a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 258 GTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444544443210000 00113466666666666766666666665555556666666666665543
No 183
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=31 Score=41.46 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHh
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDAR----DKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVV 322 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE----~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~ 322 (1043)
.++..-..-|++|+-.+..+...+..+.+.+++-+ .+...|+.++...+. ++ +.|.+|.+++..+.
T Consensus 286 e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~--e~--------~e~~~IqeleqdL~ 355 (521)
T KOG1937|consen 286 EALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLET--ED--------EEIRRIQELEQDLE 355 (521)
T ss_pred HhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc--hH--------HHHHHHHHHHHHHH
Confidence 34455566677788888777777777777777744 334444444443322 11 11334444444443
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 323 RTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKA 402 (1043)
Q Consensus 323 ~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~ 402 (1043)
.+.++-.+-+.+..++....+. +.+-.- .-.+.-+|-.+-.+|-.|.+.|-++-.++-+|++.+..+.+.+.
T Consensus 356 a~~eei~~~eel~~~Lrsele~-------lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKLRSELEK-------LPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-------CCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333311112222222221111 111001 34455667777778888888888888888888888887776654
No 184
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.34 E-value=12 Score=45.56 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 381 QRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 381 erLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
-.+..|-..|..++...|.++..+..+-..+...+..+++++...+ ..-+.|++.+..|+..+...|..-.++++..
T Consensus 437 ~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 437 VHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR---RNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666667777776665554 4677888888888888888888777777665
Q ss_pred C
Q 001620 461 K 461 (1043)
Q Consensus 461 ~ 461 (1043)
|
T Consensus 514 K 514 (518)
T PF10212_consen 514 K 514 (518)
T ss_pred h
Confidence 4
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.31 E-value=5.7 Score=39.80 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
+.++..+..+|..+.. .+.+...+++.=+-+-+..-..+....+....++.++..++.........+.. .
T Consensus 23 ~~~~~~~~~dl~~q~~-------~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~---~ 92 (132)
T PF07926_consen 23 EEQLQSLREDLESQAK-------IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE---S 92 (132)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4445555555555433 23444445554444444444444444444444444444444444444433332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
......+-..++.++..++.....+..++..|+.++.
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223344444455555555555555556555555554
No 186
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.30 E-value=5.5 Score=49.66 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=42.1
Q ss_pred HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620 364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE 420 (1043)
Q Consensus 364 nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe 420 (1043)
++..-+-.+-..+-+.+++|..+++.+++.+.++.-++.-|..+.++|.-++..|+.
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444455555666778888888888888888888888888888888877777773
No 187
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.29 E-value=1.6 Score=39.93 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620 378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel 422 (1043)
-.|++|+.+...|...-..|..+...|+.++......|+.+=.++
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444444444443333
No 188
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.28 E-value=50 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 196 FVKSSYENWLAKYWDIEEQIKELQQR 221 (1043)
Q Consensus 196 al~sqyq~~lekl~eLE~qISeaQee 221 (1043)
.+..++.....++..++..+..++..
T Consensus 620 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 620 ELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 189
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.27 E-value=14 Score=37.15 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=24.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 185 KQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 185 keI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
.+|..|+++...+.........++..++..+......+...|..
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555444
No 190
>PRK10698 phage shock protein PspA; Provisional
Probab=92.25 E-value=20 Score=39.14 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 239 EARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290 (1043)
Q Consensus 239 eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e 290 (1043)
+.-..|+..-|..+++.|.++......+...-+.+..++..+...+..+...
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777888888888887777766666666777776666666666543
No 191
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.06 E-value=32 Score=41.05 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=26.1
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhchHHHHHHHH
Q 001620 368 NLETSFSSQTALVQRLRTETDELQ--------AQIRTLEDDKASLINDKKDLSSKLV 416 (1043)
Q Consensus 368 sLE~~ISsqea~IerLr~EleELq--------eklkeLEeEl~~Lk~dRe~L~ekLk 416 (1043)
+-..-|...-...++++...-.+. .++.+|+-+...|+-++-.|.++=.
T Consensus 371 atqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqne 427 (502)
T KOG0982|consen 371 ATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNE 427 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhh
Confidence 333334444444444444444443 5666777777777666666554433
No 192
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=48 Score=42.76 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHH-HHHHHHHHHHHHHHHHHHH
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEE-ARTLMAAAALKSCRETLTQ 258 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~e-ARal~aE~aIksceEtL~e 258 (1043)
-.+++-....+-..++-+...|+.++.++...+....+.+.++..+-++.+....+...- -.++.+=..++.....+++
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E 631 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE 631 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777778888888888888889988999999999888877665554321 1122233344444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001620 259 MEEEQEKSAEEAKIERKRIKD 279 (1043)
Q Consensus 259 LEeere~s~eEa~~l~eRI~e 279 (1043)
|.-+...+.++-.....++.-
T Consensus 632 L~~q~~~L~ee~~af~~~v~~ 652 (984)
T COG4717 632 LTHQVARLREEQAAFEERVEG 652 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444443
No 193
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.74 E-value=45 Score=42.06 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhccccchhhHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL-------QDEFGQGIVIEDEEARTLMAAAALK 250 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L-------QdEf~~~a~IED~eARal~aE~aIk 250 (1043)
..+..|.+.+..|++.+.-....+..+......|+.+++.+++++..- ..-.|.-+.-+ .....-+.+-.
T Consensus 169 ~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~---~~~~~we~Er~ 245 (739)
T PF07111_consen 169 SKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPE---VHSQAWEPERE 245 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcc---cccHHHHHHHH
Confidence 455556666666666655555556666666666666666666554331 11111111000 11112233446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-HH
Q 001620 251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-RE 329 (1043)
Q Consensus 251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E~ 329 (1043)
.+.+|+..|++++..+..-+.-+.-|+.-+...+.=-+.++.+--...+. .- |+-......+-.- ..
T Consensus 246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~-Le-----------~e~~~K~q~LL~~WRE 313 (739)
T PF07111_consen 246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDP-LE-----------PEFSRKCQQLLSRWRE 313 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CC-----------chhHHHHHHHHHHHHH
Confidence 77788889999999888888888889988888777666666544222221 11 1111111111111 22
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALV-------QRLRTETDELQAQIRTLEDDKA 402 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~I-------erLr~EleELqeklkeLEeEl~ 402 (1043)
++=.|.-.++..-++ ....+.++..+|++|+.++.++.-.- +.--.+++==+-.-++|..++.
T Consensus 314 KVFaLmVQLkaQele----------h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELs 383 (739)
T PF07111_consen 314 KVFALMVQLKAQELE----------HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELS 383 (739)
T ss_pred HHHHHHHHhhHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 333333333333222 23334555555555555555444433 3333333333344456777877
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 403 SLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 403 ~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
.-...+..++.+...+++.+..|...+.++..-+.+--..+..+-+.|-.|+..|
T Consensus 384 rAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~Rl 438 (739)
T PF07111_consen 384 RAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRL 438 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7778888888999999999998888888888754443333333333444444333
No 194
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.65 E-value=2.9 Score=47.82 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRT----ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~----EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
+..++++...|...+....+....+.. ++..+++++..+..++...+.....++.++.++..++.........+..
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555433 5555555555555555544444444444444444444444444444444
Q ss_pred HHhhHH
Q 001620 435 QNYSFQ 440 (1043)
Q Consensus 435 e~~~L~ 440 (1043)
++..++
T Consensus 254 ~I~~ae 259 (312)
T smart00787 254 EIAEAE 259 (312)
T ss_pred HHHHHH
Confidence 433333
No 195
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.57 E-value=6.7 Score=40.96 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620 354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEME 419 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE 419 (1043)
+....+.++..++..++..+......+..++..........+..++.+..+......+..++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444443333333333443333333333333333333
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.22 E-value=15 Score=42.27 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=32.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 371 TSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 371 ~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
..|......|..++.++++++..+.++...+.........+..+|.+++..+.+.
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445555555556666666666666666666666666666666666655444
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.20 E-value=16 Score=46.11 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSS-QTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISs-qea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
..++..++.++.++... +.+.+-.+-.+...+.+++..|.. ....+..++.+++..+.++..|+..+..++.
T Consensus 294 ~~~l~~l~~~~~~l~~~-------y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~ 366 (754)
T TIGR01005 294 RERQAELRATIADLSTT-------MLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKA 366 (754)
T ss_pred HHHHHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554332 233333344444444444444432 2222344455556666666666665555544
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620 407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR 447 (1043)
Q Consensus 407 dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~ 447 (1043)
....+. ..+.++.++++..+..+...+.+-.++.++.
T Consensus 367 ~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 367 ASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 2344444455544455555455555555443
No 198
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.20 E-value=32 Score=41.00 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 265 KSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 265 ~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
....+...+..++..++.++..++....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 199
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.16 E-value=16 Score=42.78 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620 195 EFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF 229 (1043)
Q Consensus 195 Eal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf 229 (1043)
.....-..-...++..++.++..++..+..++.+-
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444455566666667777777777777776663
No 200
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=4.3 Score=49.88 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV 432 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esV 432 (1043)
......|-...+.+..++..+..++..+..|+.++++++..+..|+.+|..++..-..-.-+-++++..-.++..|.
T Consensus 411 ~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~--- 487 (652)
T COG2433 411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE--- 487 (652)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---
Confidence 33444455566666666666666666666666666666666666666666665444322222233333333333333
Q ss_pred HHHHhhHHHHHHHHHHhHHHHH
Q 001620 433 EDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 433 e~e~~~L~srftEa~~~L~eLs 454 (1043)
.++..-..+..++...|..+.
T Consensus 488 -~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 488 -KELEEKKKRVEELERKLAELR 508 (652)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 333333666666666666663
No 201
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.82 E-value=6.7 Score=45.17 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=55.2
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
+..++..++..+...++.+...+.++.++..++..|..+......+...|..++...+.++.+...++..+..+ +.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E----~~ 294 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE----KE 294 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch----hh
Confidence 34555555556666666666666666666666666666666666666666666666666666666666666665 33
Q ss_pred HHHHHHHhHHHHHHhhccc
Q 001620 442 HLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 442 rftEa~~~L~eLseeL~s~ 460 (1043)
| =...+..+...+.++
T Consensus 295 R---W~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 295 R---WSEQIEELEEQLKNL 310 (344)
T ss_dssp C---CHCHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHhccc
Confidence 3 334555555555544
No 202
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.76 E-value=2.2 Score=39.09 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=39.0
Q ss_pred HhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 367 VNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 367 ~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
..||.+|..+=..|..|+.++++|+++-..|.++...|+.+...|+.......++++.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666777778888888777777777777777666666665555444444433
No 203
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.72 E-value=6.8 Score=43.65 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL----QAQIRTLEDDKAS 403 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL----qeklkeLEeEl~~ 403 (1043)
.+.....+.+++++.+-. ..--++|....+++..+..+|+...-..+-.+++++...+.- -..+..|++++..
T Consensus 26 kq~f~~~reEl~EFQegS---rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq 102 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGS---REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ 102 (333)
T ss_pred HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888865521 122356777788888888888877766666666666655543 3467889999999
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 404 LINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 404 Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
++.-.+.|++.+++++..-+.+.+.-..-..-+..+..++..|...+.-|.++|.
T Consensus 103 t~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 103 THAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988888776665555566666666666666666655553
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.34 E-value=10 Score=47.97 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred HH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 001620 178 KE-IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL 256 (1043)
Q Consensus 178 ~E-IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL 256 (1043)
++ |.++.....+++.....+..++++-+.++.+++.++..++.....|.++ +|++..+-..+...++.+...+
T Consensus 550 eeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR------~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 550 EEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER------YEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6777777888888888888888888888888888888888888888777 7766666666555555444333
No 205
>PRK10869 recombination and repair protein; Provisional
Probab=90.27 E-value=55 Score=40.42 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 196 FVKSSYENWLAKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 196 al~sqyq~~lekl~eLE~qISeaQeeV~~L 225 (1043)
.++..|+.+..++..+.+++..++......
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~ 183 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQER 183 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445555555555555555555554444433
No 206
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.21 E-value=41 Score=38.84 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHhHHHhhh
Q 001620 354 EMAEKIDEVVSKVVNLETSFS 374 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~IS 374 (1043)
=|-.+++.|...+..|+..+.
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344455666666666655554
No 207
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=90.16 E-value=54 Score=40.18 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhc-CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEF-GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTL 397 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~ee-ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeL 397 (1043)
+..+++|..++++.++. .....+++.+.+..++-+.++-.-|+..|......|..|...+..+..++.--
T Consensus 307 ~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~q 377 (531)
T PF15450_consen 307 ESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQ 377 (531)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 67777777777776653 22255677777888888888888888888888888888887777777665433
No 208
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=50 Score=39.79 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 261 EEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 261 eere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.++.....++....++|..-+...+.|+.++..+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3445666777777888888888888888888776
No 209
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.09 E-value=25 Score=38.74 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHH
Q 001620 175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRE 254 (1043)
Q Consensus 175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceE 254 (1043)
+++.=..-|.-.|-..+.+...++...-+.++.-..+++++.+++.++..++... ..|.--.++.=+..+-.++.+++.
T Consensus 21 k~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A-~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 21 KAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA-ELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3333336677778888888888888888888888888888888888888887662 111111123334444566666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.+.-++.....+..-...+...+..++.+|..++....-+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777776666655433
No 210
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=89.88 E-value=0.37 Score=55.03 Aligned_cols=126 Identities=17% Similarity=0.326 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
.++|..|.++|..+ +-+++.|.+-|-.+..+|.+|...+......|..+..+|+.+...+..+...+..|...
T Consensus 27 ~GDLs~I~eRLsaL-------Essv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsss 99 (326)
T PF04582_consen 27 PGDLSPIRERLSAL-------ESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSS 99 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666666666553 44667777778888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
-..|...+.....-+..++..+....-.+.||+.........|..|...|.+.
T Consensus 100 Vs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 100 VSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 88888888888888999999999999999999999998888899988888764
No 211
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.29 E-value=4.7 Score=46.11 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK 401 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl 401 (1043)
+..+...+..++.+.....+.+..|+.+-+++...+..|+.+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333333333333333333333
No 212
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.28 E-value=55 Score=40.19 Aligned_cols=96 Identities=17% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620 336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQ-------RLRTETDELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~Ie-------rLr~EleELqeklkeLEeEl~~Lk~dR 408 (1043)
..|..++. .+|.+|...+..+.-|.+.+..+.......+. .+..++.....++..|++||.. -|
T Consensus 412 ~LIk~~Y~------~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T---Tr 482 (518)
T PF10212_consen 412 QLIKSYYM------SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET---TR 482 (518)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 33555544 34677777777777776665554433333333 3444555555555555555442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620 409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ 440 (1043)
Q Consensus 409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~ 440 (1043)
..-..+|.-|-+-+..+.+....-++++.+|+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555555544444444444444
No 213
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.27 E-value=14 Score=45.61 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLA-------KYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~le-------kl~eLE~qISeaQeeV~~L 225 (1043)
.+-..+|+++..|+..|+.+.+||.=..+ ||-+||-.|.+-+..++..
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnat 158 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNAT 158 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchH
Confidence 34466888899999999999888865554 5556666666666655544
No 214
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.92 E-value=38 Score=41.30 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=52.0
Q ss_pred HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001620 363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH 442 (1043)
Q Consensus 363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~sr 442 (1043)
..+++.+...|.+-+.+..++..++-.|-..+-.+..++..+.-+.+.|..-|..+.+..+.+++-...++++..-.-..
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~ 290 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQM 290 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555555555555555555555555566
Q ss_pred HHHHHHhHHHHH
Q 001620 443 LTEARYNIDHLS 454 (1043)
Q Consensus 443 ftEa~~~L~eLs 454 (1043)
|.|++.+|..|+
T Consensus 291 ~~EaeeELk~lr 302 (596)
T KOG4360|consen 291 LHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHhhc
Confidence 666666666654
No 215
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.82 E-value=50 Score=37.96 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKY 208 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl 208 (1043)
+.+|+.|.+....|-.+.-.+.-++.....+.
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~ 52 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQ 52 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444444444433333333333
No 216
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=70 Score=39.52 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
-++|-.|+.+++.+.-+ ++...+..+.+.-...++...-+..+.+--||+.+|-+.+-+...|=.+-.+|.++
T Consensus 106 l~kI~eleneLKq~r~e-------l~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 106 LQKILELENELKQLRQE-------LTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555544332 24445556666667777777777777778888888888888887666666666666
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001620 408 KKDLSSKLVEMEE---KLLRLHDLNRSVEDQNYSFQTHLTEA 446 (1043)
Q Consensus 408 Re~L~ekLkElEe---el~evq~l~esVe~e~~~L~srftEa 446 (1043)
+=.|+.....++. +...++.-+.+++.+..-|.....++
T Consensus 179 NIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 179 NISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554444433 33444444555555555555544443
No 217
>PLN02939 transferase, transferring glycosyl groups
Probab=88.64 E-value=25 Score=46.01 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=21.8
Q ss_pred HHHHHHHhHHhHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 358 KIDEVVSKVVNLETSFS----SQTALVQRLRTETDELQAQIRTLEDD 400 (1043)
Q Consensus 358 kIdeLvnKV~sLE~~IS----sqea~IerLr~EleELqeklkeLEeE 400 (1043)
.++-++.||.-++..+. +..+.|+-...++++++..+..|.+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 352 KVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555544433 23344445555666666666655544
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.61 E-value=12 Score=36.91 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=50.7
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR 424 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e 424 (1043)
..++.|++++|+..+.....-+.+|-.+-++|...+..|..+...+.....+|+.+|.++..-++.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888888888877777777777777665554
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.50 E-value=12 Score=41.37 Aligned_cols=64 Identities=9% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHh
Q 001620 393 QIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHK 456 (1043)
Q Consensus 393 klkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLsee 456 (1043)
.|.++..+...|..+|....+.|+.+...+..+.+.+...+.+.+..+.....+..++.-|..+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444333333
No 220
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.16 E-value=50 Score=39.96 Aligned_cols=110 Identities=12% Similarity=0.199 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQM 259 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eL 259 (1043)
++-|.+. .+|..-...++---..-..+|.+|.-.-..+.+.|..||..+ .+--..-.-|+.+++-|.+|
T Consensus 306 lqpleed-maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~----------~kQqvfvDiinkLk~niEeL 374 (527)
T PF15066_consen 306 LQPLEED-MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKI----------TKQQVFVDIINKLKENIEEL 374 (527)
T ss_pred cCCcHHH-HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHH
Confidence 3444333 455555555555556666777777777777777777777762 23333334556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001620 260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI 300 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~ 300 (1043)
-+..-...-|-..+...+..+...+...++.+.....+++.
T Consensus 375 IedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKet 415 (527)
T PF15066_consen 375 IEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKET 415 (527)
T ss_pred HHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666565666666666666666666666666655555544
No 221
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.06 E-value=67 Score=38.51 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET---DELQAQIRTLE 398 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~El---eELqeklkeLE 398 (1043)
++.++.++..-|.++|-.+..=.....+.+.-+.+.. +.+++....+.
T Consensus 263 ~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lk 313 (446)
T KOG4438|consen 263 AMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELK 313 (446)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5667777777777888777777777777666666555 55555554444
No 222
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.72 E-value=7.5 Score=49.19 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.|...+...++.-...|.+|+++++.+.+.+..+.+|++++.++-+.|.+.+..+
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555566777777777777777788888888888877777777544
No 223
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.48 E-value=5 Score=37.52 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=40.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV 432 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esV 432 (1043)
||.+|-.+-+.|.=|+-|+++|+++=..|..+...+...|+.|..+...+..++..-+.+++.+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555666666667666667777777777777777777777776666555554443
No 224
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.42 E-value=9 Score=42.25 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhHHhHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLET---SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL 428 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~---~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l 428 (1043)
|.++..+..++.-.+..+-. .+..-+.-|..++.|.+.|...-....++|.....|...|..-++.++.++.+.+..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444433 344445678888899999999889999999999999999999999999999999888
Q ss_pred HHHHHHHHhhHHHHHHHHHHh
Q 001620 429 NRSVEDQNYSFQTHLTEARYN 449 (1043)
Q Consensus 429 ~esVe~e~~~L~srftEa~~~ 449 (1043)
..++..+..-|.....++..+
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888766666555544443
No 225
>PF13166 AAA_13: AAA domain
Probab=87.39 E-value=88 Score=39.12 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=3.0
Q ss_pred hhcccch
Q 001620 167 VKSGLSK 173 (1043)
Q Consensus 167 ~~SgLSf 173 (1043)
+..|+.+
T Consensus 245 v~~G~~~ 251 (712)
T PF13166_consen 245 VEQGLEL 251 (712)
T ss_pred HHcCccC
Confidence 3444443
No 226
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.27 E-value=62 Score=37.23 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHHH
Q 001620 439 FQTHLTEARYNIDHL 453 (1043)
Q Consensus 439 L~srftEa~~~L~eL 453 (1043)
++.....+...+..+
T Consensus 251 ~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 251 AQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 227
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=87.08 E-value=85 Score=38.59 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhHHhhhhcccc
Q 001620 74 RAYRALAERYDHISTELQNANTTI 97 (1043)
Q Consensus 74 r~Yr~Laeryd~~t~el~~~~~~~ 97 (1043)
+...-+--|.|.-.+||..-++-+
T Consensus 48 ~el~qvr~~~~~Q~seL~~l~~ev 71 (531)
T PF15450_consen 48 RELLQVRARVQLQDSELMQLRQEV 71 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456667788888888776654
No 228
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.88 E-value=31 Score=34.72 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L 225 (1043)
.-|.+|+..|-.++.|+-+++.++.+....-..++.+|..+-.++..+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888877777777766666666666555544444333
No 229
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.63 E-value=5.6 Score=37.21 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ 423 (1043)
...|..+|.++|+.|.-|.-+|.+..++=..|..+++.+...-.+|+.+...|+.++..-+++|+.+--+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356777788888888877777777777777777777776666667777777777777777777776655443
No 230
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.51 E-value=26 Score=38.91 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=66.8
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYS 438 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~ 438 (1043)
..+...++..|+......+..-.+|.....++......|+.........+..|..++.++..++..+....+.-..+...
T Consensus 28 L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~ 107 (246)
T PF00769_consen 28 LEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEE 107 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555666666777777777777777777777778888888889999999988888888888888888
Q ss_pred HHHHHHHHHHhHHHHHHhhccc
Q 001620 439 FQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 439 L~srftEa~~~L~eLseeL~s~ 460 (1043)
++..+.++...+..-..+|+.+
T Consensus 108 lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 108 LQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888877777554
No 231
>PF14992 TMCO5: TMCO5 family
Probab=86.46 E-value=32 Score=39.17 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh-hHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ-DREDLESLRE 336 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e-EE~rLe~Ld~ 336 (1043)
.|+.+.....+.-..+-.+|.+++..+.+|..+|....-..+. -++. ..+-. -+..+++|+.
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~----------------~e~e-~~~~~~~e~~l~~le~ 70 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADR----------------SEEE-DIISEERETDLQELEL 70 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc----------------hhHH-hhhhhchHHHHHHHHh
Confidence 4556666777777888888899999999998888766332222 0111 11111 2556777777
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHh
Q 001620 337 KIKEQLEFGSSGSLTVTEMAEKIDEVVSK 365 (1043)
Q Consensus 337 kInEl~eeke~a~lsV~ELaEkIdeLvnK 365 (1043)
+...+-...++.+.+|.|+..++++-..+
T Consensus 71 e~~~LE~~ne~l~~~~~elq~k~~e~~~~ 99 (280)
T PF14992_consen 71 ETAKLEKENEHLSKSVQELQRKQDEQETN 99 (280)
T ss_pred hhHHHhhhhHhhhhhhhhhhhhhccccCC
Confidence 77776666666667777776666644433
No 232
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.39 E-value=54 Score=35.62 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSCRETLTQM 259 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksceEtL~eL 259 (1043)
..|.--|-.++.....++..+-++...--.++.++.+++..+..++...- ..+. ..+.-+..+-.....++..+..|
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~--~Al~~G~EdLAr~Al~~k~~~~~~~~~l 104 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE--LALSKGREDLARAALIEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555566666666666666555420 1111 11122222334667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
+.........+..+..++..++.++..++..-
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777776544
No 233
>PRK10869 recombination and repair protein; Provisional
Probab=86.32 E-value=83 Score=38.90 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
++..+++.+........++++-++-.++.|.
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444443
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=7.1 Score=48.06 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
....|..|.++|-.|+..+++....|++|+.+++.|+.++..+-.+.. .......+++.++.++..++..+..-..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666666555433 2223334455555555555555555555
Q ss_pred HHhhHHHHHHHHH
Q 001620 435 QNYSFQTHLTEAR 447 (1043)
Q Consensus 435 e~~~L~srftEa~ 447 (1043)
...-|..++.++.
T Consensus 496 ~ve~L~~~l~~l~ 508 (652)
T COG2433 496 RVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 235
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.29 E-value=1.1e+02 Score=38.98 Aligned_cols=256 Identities=12% Similarity=0.157 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-------HHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-------AALK 250 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-------~aIk 250 (1043)
+.|..|+++....+.|...+.-.++.-.+++.==+....-+|.+...-++. -....-+..+++ .++.
T Consensus 338 ~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea------~~~lqqq~~~aee~Lk~v~eav~ 411 (739)
T PF07111_consen 338 GQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEA------RRRLQQQTASAEEQLKLVSEAVS 411 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887777666665532222222345555544433 111222333333 4556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccc-hhhhcccccchhhHhhhhhhHH
Q 001620 251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDS-VKAVEESDRSDIDVVRTAQDRE 329 (1043)
Q Consensus 251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~-le~iSeIpeLeee~~~l~eEE~ 329 (1043)
+|+-.|..--.+.+.+...+..+..|+.-+-.++..|+.-+...-+- ..+...+ --.-....+|..++..++++.+
T Consensus 412 S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Al---aqlrqe~~~~~pp~~~dL~~ELqqLReERd 488 (739)
T PF07111_consen 412 SSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLAL---AQLRQEQCPPSPPSVTDLSLELQQLREERD 488 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHH---HHHHhccCCCCCCchhhHHHHHHHHHHHHH
Confidence 66665555555556666677777777777777777766554433110 0011110 0000122256677777777755
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK 409 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe 409 (1043)
++..=-.--..++..+ ...+-++....+..+-.+...|+.........+..+...+..-...+.+..++-..|+.+-.
T Consensus 489 Rl~aeLqlSa~liqqe--V~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~ 566 (739)
T PF07111_consen 489 RLDAELQLSARLIQQE--VGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELT 566 (739)
T ss_pred HHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5522111111111111 01112334445566666677777777777777777766666666666666666666655555
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620 410 DLSSKLV-EMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR 447 (1043)
Q Consensus 410 ~L~ekLk-ElEeel~evq~l~esVe~e~~~L~srftEa~ 447 (1043)
..++.+. .+.++..+| ..++..++..+..++.++.
T Consensus 567 ~QQ~~y~~alqekvsev---Esrl~E~L~~~E~rLNeAR 602 (739)
T PF07111_consen 567 QQQEVYERALQEKVSEV---ESRLREQLSEMEKRLNEAR 602 (739)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4443333 333333333 2233344444444444433
No 236
>PRK04406 hypothetical protein; Provisional
Probab=86.26 E-value=3.2 Score=38.29 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=29.2
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
|+.+..+|..||.+++-|+..|+.|+..+-..+..+..|...+..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666555555
No 237
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=85.79 E-value=55 Score=35.15 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ 326 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e 326 (1043)
.||+.+++.|-.|+=++..+...+..+..+...-..-+..-..+-. ..... + ...-.+-...+..
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~---~~~~e--~----------~~q~~dl~~qL~a 68 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERE---RAHQE--L----------SKQNQDLSSQLSA 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhh---cccch--h----------hhccHHHHHHHHH
Confidence 5889999999999999999999998888887654433321111110 00000 0 0000111222333
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH-HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVV-SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLv-nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
.+.|-..|+..|+-+ ...|..+. ++..-++..++-+... .--..++-..-+++.-||.|+.-|.
T Consensus 69 AEtRCslLEKQLeyM--------------Rkmv~~ae~er~~~le~q~~l~~e~-~~~~~~~~~klekLe~LE~E~~rLt 133 (178)
T PF14073_consen 69 AETRCSLLEKQLEYM--------------RKMVESAEKERNAVLEQQVSLQRER-QQDQSELQAKLEKLEKLEKEYLRLT 133 (178)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 355554454444333 33333333 3444444444333331 1113345555677888999999998
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 406 NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 406 ~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
.--.--..+|+.+++++.+=+.--.-|++...-|++-+.
T Consensus 134 ~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 134 ATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888899999999988877766677777666665543
No 238
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.69 E-value=35 Score=34.64 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 379 LVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 379 ~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
.+.+++.+++.+...+..|++.++.+......+..+.+.+..++..+
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 239
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.40 E-value=39 Score=37.55 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 244 MAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 244 ~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
++..++...++++..|++++..+.+++..+..+..+++.....|.
T Consensus 23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555444444444444444444333333
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.40 E-value=90 Score=37.31 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=14.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 189 TLQTDKEFVKSSYENWLAKYWDIEEQI 215 (1043)
Q Consensus 189 ~LQtEKEal~sqyq~~lekl~eLE~qI 215 (1043)
.++++++.+..++.....++..|+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 241
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.40 E-value=5.7 Score=43.57 Aligned_cols=72 Identities=22% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620 383 LRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 383 Lr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs 454 (1043)
++...++++.++.++..++.+|.++...|..++.++.+++.++..-+..++....-+-.....+...+++|.
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 344444455555555555555555444444444444444444444444444433333333333333344443
No 242
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.33 E-value=51 Score=34.42 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=22.8
Q ss_pred ccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHH
Q 001620 348 GSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT 385 (1043)
Q Consensus 348 a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~ 385 (1043)
....+.++=..++.+++.+..++..|......++.+..
T Consensus 136 ~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 136 GLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777777766666666555555554443
No 243
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.30 E-value=21 Score=39.22 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH---------HHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE---------MEEKLL 423 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE---------lEeel~ 423 (1043)
.+|..+|..+...+..|+..+...+..|..++.++++|+.++.+++.-..+|.---..+-..|.. .+++..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~ 131 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQE 131 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Confidence 44444455555555555555555555555555555555555555544444444333333333333 223444
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 001620 424 RLHDLNRSVEDQNYSFQTHLTEA 446 (1043)
Q Consensus 424 evq~l~esVe~e~~~L~srftEa 446 (1043)
++..+-..+..-..++-.+|..+
T Consensus 132 Rl~~L~~~l~~~dv~~~ek~r~v 154 (251)
T PF11932_consen 132 RLARLRAMLDDADVSLAEKFRRV 154 (251)
T ss_pred HHHHHHHhhhccCCCHHHHHHHH
Confidence 44444444444434444444433
No 244
>PRK02119 hypothetical protein; Provisional
Probab=85.27 E-value=3.5 Score=37.77 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
..+.+||..||.+++-++..|+.|+..+.+.+..+..|...+..|.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666665555555543
No 245
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.18 E-value=86 Score=36.89 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001620 257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG 293 (1043)
Q Consensus 257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~ 293 (1043)
........-+..++..+..++..++.++..++.+.+-
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344445566666777777777777777777776543
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.97 E-value=10 Score=41.24 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=5.2
Q ss_pred hhhchHHHHHHHHH
Q 001620 404 LINDKKDLSSKLVE 417 (1043)
Q Consensus 404 Lk~dRe~L~ekLkE 417 (1043)
|..++..|++++..
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 247
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=84.65 E-value=57 Score=34.36 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH
Q 001620 242 TLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV 321 (1043)
Q Consensus 242 al~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~ 321 (1043)
+..+..++......|.++..+...+..+++.+..+-..++..+......|.+- .
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y-----------s--------------- 75 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY-----------S--------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----------C---------------
Confidence 33445667777777788888888888888888888888888888777777422 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 322 VRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK 401 (1043)
Q Consensus 322 ~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl 401 (1043)
+.+|.....+-..+...-.........|..+.|.|..++..|...|.-++..+..+..-++=|..-+..+...+
T Consensus 76 ------E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~ 149 (159)
T PF05384_consen 76 ------EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQI 149 (159)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222222222222221111111225667777888888888888888888888887777777777776666665
Q ss_pred HHhh
Q 001620 402 ASLI 405 (1043)
Q Consensus 402 ~~Lk 405 (1043)
..++
T Consensus 150 e~~~ 153 (159)
T PF05384_consen 150 EDAQ 153 (159)
T ss_pred HHHH
Confidence 5543
No 248
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=84.63 E-value=4.6 Score=51.03 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 187 ILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS 266 (1043)
Q Consensus 187 I~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s 266 (1043)
+..|..+.....-.|-.-..++.++++++..++.++..+..... .............+...+.++.+++.+....
T Consensus 12 F~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~-----~~~~~~~~~~~~~i~~le~~l~~le~~l~e~ 86 (759)
T PF01496_consen 12 FRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLP-----EKNDKPDAPKPKEIDELEEELEELEEELREL 86 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCccc-----ccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555544455666677778888888888888877755521 0011111112224555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 267 AEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 267 ~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
.+....+.+++.++.+....|+.....+..
T Consensus 87 ~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~ 116 (759)
T PF01496_consen 87 NENLEKLEEELNELEEEKNVLEEEIEFLEE 116 (759)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666665555544
No 249
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.58 E-value=3.8 Score=36.94 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
..+|.+||.+++-++..|+.|+..+...+..+..|+..+..|..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444444444444444444433
No 250
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.49 E-value=51 Score=34.40 Aligned_cols=69 Identities=12% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK 421 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee 421 (1043)
..|...+-.-+.-+...........+.+..++.+|......+..+.+++..++.++..+......+...
T Consensus 66 ~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 66 LKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555556666666666666666666666666666666666666666666666555543
No 251
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.37 E-value=16 Score=39.17 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
......+..+-+.+..|+. -.|=.--++.-+.++-.+..+...+.+....+..+ |++..+....++..|..++
T Consensus 65 dd~~~~f~~~~~tl~~LE~-~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~------~~~~~~~~~~~e~~i~~Le 137 (190)
T PF05266_consen 65 DDSRSSFESLMKTLSELEE-HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKK------IEEKEAELKELESEIKELE 137 (190)
T ss_pred CCcHHHHHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHH
Confidence 3333566666666666664 33333344444555666777777777777777666 5555555556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG 293 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~ 293 (1043)
..|.+|++...............|.++...+..|+.++..
T Consensus 138 ~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 138 MKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666666666666666666666666666643
No 252
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.37 E-value=11 Score=40.85 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 412 SSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 412 ~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+.++........+++..++.+..++..++.....+..+++.+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 253
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=84.17 E-value=72 Score=36.07 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK 337 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k 337 (1043)
.|...+..+...-..+--|...-+.+...+...|..+.....-+.. -.|--.|+=.
T Consensus 119 ~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~------------------------qlR~~llDPA 174 (330)
T KOG2991|consen 119 KLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVA------------------------QLRSTLLDPA 174 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHH------------------------HHHHHhhChH
Confidence 3444444455555556666666666666666666655443322100 2233346666
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhh-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhc
Q 001620 338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQ-----TALVQRLRTETDELQ-----AQIRTLEDDKASLIND 407 (1043)
Q Consensus 338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsq-----ea~IerLr~EleELq-----eklkeLEeEl~~Lk~d 407 (1043)
||.+|+.-. --+++-..+|++++|.++.-.=.=-+. -|.---|..|+++|- -++.+|+-+|++-++.
T Consensus 175 inl~F~rlK---~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~ 251 (330)
T KOG2991|consen 175 INLFFLRLK---GELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQ 251 (330)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhh
Confidence 666665432 124445566666666665543322222 233444555666663 4688888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+++|+..-.++-+-+.++..-++..++-+--|+..+.+..-+|..|...+
T Consensus 252 seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 252 SEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777776666666666666777766666666665443
No 254
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.03 E-value=22 Score=39.20 Aligned_cols=125 Identities=19% Similarity=0.265 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchHHHH
Q 001620 334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD-KASLINDKKDLS 412 (1043)
Q Consensus 334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE-l~~Lk~dRe~L~ 412 (1043)
+.+.|+......+... .=|.-.|.....-...+...+..+-+.-.++..+++.+......++.. ...|...++.|-
T Consensus 11 ~~a~~~~~~dk~EDp~---~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA 87 (225)
T COG1842 11 VKANINELLDKAEDPE---KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4455555555444333 334556667777777777777777777777777777777777777744 235666666665
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620 413 ----SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK 461 (1043)
Q Consensus 413 ----ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~ 461 (1043)
.+...++......+..+..+......|+.....++..|.+++.+...++
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777778888888888888888877666554
No 255
>PRK04406 hypothetical protein; Provisional
Probab=83.97 E-value=5.4 Score=36.84 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 350 LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 350 lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
.++..+.++|..|..+++=++..|.+++..|-+...+|+.|+.+++-|-+.+.++.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667888888888888888888888888888888888888888888877776654
No 256
>PF15294 Leu_zip: Leucine zipper
Probab=83.93 E-value=8.8 Score=43.45 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 001620 375 SQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHD 427 (1043)
Q Consensus 375 sqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~ 427 (1043)
-....|.||+.|++.|+.++..++..+...-+++.+|..+|++++......+.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~ 181 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG 181 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36778999999999999999999999999999999999999999995555544
No 257
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=83.89 E-value=72 Score=34.95 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccccchhhHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE------FGQGIVIEDEEARTLMAAAALKS 251 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE------f~~~a~IED~eARal~aE~aIks 251 (1043)
.-|+.|+..+.-|..-+ ............+...=.++..++.++..+... ...+..+++++-+...+...+..
T Consensus 18 ~~i~~l~~al~~L~~~~-~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~ 96 (240)
T PF12795_consen 18 ALIQDLQQALSFLDEIK-KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQE 96 (240)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHH
Confidence 44555555555444222 222222223333333334444444444444221 12344677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHH
Q 001620 252 CRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDL 331 (1043)
Q Consensus 252 ceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rL 331 (1043)
.+..|..+................++.++...+..+...+..+....+.+ + .....- .-..++
T Consensus 97 ~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~-l-------------~~a~~~---~l~ae~ 159 (240)
T PF12795_consen 97 LQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESP-L-------------SEAQRW---LLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcch-h-------------hHHHHH---HHHHHH
Confidence 77777777777777777777777777777777777777666542222110 0 001101 113445
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH
Q 001620 332 ESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE 389 (1043)
Q Consensus 332 e~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE 389 (1043)
..+..++..+..+-.+.+...+=..-++|.+.-++.-++..+...+..|++.|..-.+
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae 217 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAE 217 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444444445566666667777777777777777766655443
No 258
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.70 E-value=34 Score=34.41 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=15.0
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
.+...|.-++..+......+.+|..+-+.+...+-.|-
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444443333333333
No 259
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=83.53 E-value=1.9 Score=49.52 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
-..||..|+..++.+... |..+..+|-.|...+.++...|.+.+..|..|...+-.++..+..|+..+..|..
T Consensus 33 I~eRLsaLEssv~sL~~S-------Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~ 105 (326)
T PF04582_consen 33 IRERLSALESSVASLSDS-------VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSS 105 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 356677777777776554 4555555555666666666666666666666666666666666666666666666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 407 dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
.-......|..|...+..+...+..++.-.+++-...+.+...+..|+.-.-+
T Consensus 106 ~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 106 TLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 66666666666666666666666666666666667777777777777665544
No 260
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.41 E-value=72 Score=34.62 Aligned_cols=51 Identities=10% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290 (1043)
Q Consensus 240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e 290 (1043)
.-..|+...|..+++.|.+.......+....+.+..++..+...+..+...
T Consensus 24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666666666666555543
No 261
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.21 E-value=88 Score=35.42 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-HHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-REDLESLRE 336 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E~rLe~Ld~ 336 (1043)
+|++--+.....+..+...+..+..+|.....++.-|-.-++- .|- ...=.|..|..++..++.. ..++.+|..
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~---EYP--vK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDH---EYP--VKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444433333321 111 1112556666677666655 556655555
Q ss_pred HHHH
Q 001620 337 KIKE 340 (1043)
Q Consensus 337 kInE 340 (1043)
-+..
T Consensus 146 ~~~~ 149 (258)
T PF15397_consen 146 MRQM 149 (258)
T ss_pred HHHH
Confidence 4443
No 262
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.81 E-value=5 Score=36.70 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=24.8
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
+.++|..||.+++-|+..|+.|+..+...+..+..|...+..|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655555555555555444
No 263
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.69 E-value=99 Score=35.67 Aligned_cols=229 Identities=15% Similarity=0.205 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 182 KLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEE 261 (1043)
Q Consensus 182 rLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEe 261 (1043)
.|+.+|+.|--|.+.++.+-+.-+.+|++=-.-+. +....|+.. |- --..++...+-+|...|.-|-.
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~K---ekn~~Lqk~------lK---LneE~ltkTi~qy~~QLn~L~a 70 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILK---EKNDDLQKS------LK---LNEETLTKTIFQYNGQLNVLKA 70 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHH------Hh---hhHHHHHHHHHHHhhhHHHHHH
Confidence 47888999999999999888877777754222211 111112111 10 1123445567777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh-------hhHHHHHHH
Q 001620 262 EQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA-------QDREDLESL 334 (1043)
Q Consensus 262 ere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~-------eEE~rLe~L 334 (1043)
+-..+...+.....--++++.++++....++. .|.+.+.-..+-+ ...++---|
T Consensus 71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaa-------------------Ai~d~dqsq~skrdlelafqr~rdEw~~l 131 (305)
T PF14915_consen 71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAA-------------------AIQDHDQSQTSKRDLELAFQRARDEWVRL 131 (305)
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHhhHHHHHHHHHHHhhHHHHH
Confidence 88888888888888888888888888877742 1222111100000 001111112
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 001620 335 REKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSK 414 (1043)
Q Consensus 335 d~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ek 414 (1043)
..++ +.-|..+.+..+-|-...+..+..+.+........+..+.++--.+. .+..+.+-.+-+
T Consensus 132 qdkm----------n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE-------~~QrdL~Qtq~q 194 (305)
T PF14915_consen 132 QDKM----------NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALE-------SVQRDLSQTQCQ 194 (305)
T ss_pred HHHh----------cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 2222 22344455555555555555555555555555555544444444444 444444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 415 LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 415 LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
+++++....--++.+...-..-++++.++.++.++=-=|+++|.
T Consensus 195 ~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 195 IKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655655553
No 264
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.43 E-value=1.3e+02 Score=36.83 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 001620 409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDH 452 (1043)
Q Consensus 409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~e 452 (1043)
.++...|+.+-+-+..-|..++.+..+.++|..++..+...|..
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 34556666666666666667777777777777766666665554
No 265
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.21 E-value=32 Score=38.95 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHh
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSK 365 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnK 365 (1043)
+.++..+...++.+-- +-+.|.=|+.+.+++.+.
T Consensus 148 ~~dl~e~~~~l~DLes----a~vkV~WLR~~L~Ei~Ea 181 (269)
T PF05278_consen 148 ESDLKEMIATLKDLES----AKVKVDWLRSKLEEILEA 181 (269)
T ss_pred HHHHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHH
Confidence 3345555555555422 334555555555554444
No 266
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.16 E-value=12 Score=38.85 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 001620 330 DLESLREKIKEQ 341 (1043)
Q Consensus 330 rLe~Ld~kInEl 341 (1043)
++..++.+|.++
T Consensus 73 el~~ld~ei~~L 84 (169)
T PF07106_consen 73 ELAELDAEIKEL 84 (169)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 267
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.99 E-value=42 Score=39.07 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=48.5
Q ss_pred hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 001620 365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH-----------DLNRSVE 433 (1043)
Q Consensus 365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq-----------~l~esVe 433 (1043)
=++.....+-..++.|.+++.|..-++-.+.++..++.+..++...|+.++.++..-..++- .-+..-+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 34445555555666666666666666666666666666666666666655555444333332 2233334
Q ss_pred HHHhhHHHHHHHHHHhHHHH
Q 001620 434 DQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 434 ~e~~~L~srftEa~~~L~eL 453 (1043)
..+..|+++...+-++|..|
T Consensus 201 ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444444444
No 268
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.51 E-value=55 Score=31.95 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=67.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 189 TLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAE 268 (1043)
Q Consensus 189 ~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~e 268 (1043)
+|.+-++.+......+..+-..|+..-..++..+..+ +.| |.+++++...|......-.....+...++..+..
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f-~~f-----lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~ 88 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELEKKEQELEEDVIKF-DKF-----LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKA 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666777777777777777 333 8888888888887777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001620 269 EAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 269 Ea~~l~eRI~eaE~elesLk 288 (1043)
++..+..+|..++..+..++
T Consensus 89 ~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 89 ELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777664
No 269
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.43 E-value=6.3 Score=35.58 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
+.++|..|..|++=++..|...+..|-+...+|+.|+..++.|.+.+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777766665
No 270
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.34 E-value=13 Score=34.25 Aligned_cols=21 Identities=10% Similarity=0.371 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHhHHHhhh
Q 001620 354 EMAEKIDEVVSKVVNLETSFS 374 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~IS 374 (1043)
.|.++|.++++.|.=|.-.|.
T Consensus 8 kLE~KiqqAvdTI~LLQmEie 28 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIE 28 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444443333
No 271
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=81.21 E-value=35 Score=34.84 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhhhhhhhcccc
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKE--------------------LQQRVYSLQDEFGQGI 233 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISe--------------------aQeeV~~LQdEf~~~a 233 (1043)
..|..||....+.|..+|+.+-....-|-+--..+......+.+ .|.+|+.++.+
T Consensus 11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~d----- 85 (136)
T PF11570_consen 11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKD----- 85 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHH-----
Confidence 56667888888888888888877776676666666666666655 23333333333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKF 284 (1043)
Q Consensus 234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~el 284 (1043)
|+.-++....+++.+....+.|.-.+.-+..+.+....-..++.+++.++
T Consensus 86 -v~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl 135 (136)
T PF11570_consen 86 -VQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKL 135 (136)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 43333333334444444444444444445555555555555554444443
No 272
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.63 E-value=4.8 Score=36.98 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcC
Q 001620 331 LESLREKIKEQLEFG 345 (1043)
Q Consensus 331 Le~Ld~kInEl~eek 345 (1043)
|..-+..|+.+..+.
T Consensus 7 l~EKDe~Ia~L~eEG 21 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEG 21 (74)
T ss_pred HHhHHHHHHHHHHHH
Confidence 444555555555555
No 273
>PRK00295 hypothetical protein; Provisional
Probab=80.56 E-value=7.1 Score=35.35 Aligned_cols=41 Identities=29% Similarity=0.260 Sum_probs=20.7
Q ss_pred HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 364 nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
.+|..||.+++-++..|+.|+..+-..+..+..|...+..|
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554444444444
No 274
>PRK02119 hypothetical protein; Provisional
Probab=80.34 E-value=9.1 Score=35.14 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
+..+.++|..|..|++=.+..|..++..|-+...+|+.|+..++-|-+.+.++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355777888888888888888888888888888888888888887777776654
No 275
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.24 E-value=41 Score=33.75 Aligned_cols=97 Identities=15% Similarity=0.323 Sum_probs=67.1
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---------------------------
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK--------------------------- 408 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR--------------------------- 408 (1043)
...++++......+...+...+..+..++..+.++...+.+|+. |....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~----l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE----LKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 44566667777777777777777777777777777777766652 22110
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHh
Q 001620 409 ---------KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHK 456 (1043)
Q Consensus 409 ---------e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLsee 456 (1043)
-.+.+.+.-+++++..+......+...+..++.++.++...+..+..+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 156677777777888887778888888777777777777777776543
No 276
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.22 E-value=9.1 Score=35.02 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
.++.++|..|..+++=.+..|.+++..|-+...+|+.|+..++-|-+.+..+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 446677888888888888888888888888888888888777777777766543
No 277
>PRK04325 hypothetical protein; Provisional
Probab=80.05 E-value=7.6 Score=35.72 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
+..+|..||.+++-|+..|+.|+..+-..+..+..|...+..|
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555554444
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.00 E-value=13 Score=44.78 Aligned_cols=78 Identities=13% Similarity=0.310 Sum_probs=57.9
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKA-SLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQN 436 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~-~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~ 436 (1043)
|-.|+.++..++.++.....+-++|+.|++.|+++...+...+. .|...+.++..+..++..++..++.++..+..++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888889999999888888887776 4556677777777777666666666655555443
No 279
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=79.92 E-value=1.3e+02 Score=35.41 Aligned_cols=96 Identities=11% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 182 KLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEE 261 (1043)
Q Consensus 182 rLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEe 261 (1043)
.|...+..+..|.+.+......+...+..++.=++-+++=+..-..+.|+-.+-++-+....+-..-|..|+..|. .
T Consensus 61 eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~---~ 137 (384)
T PF03148_consen 61 ELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQ---R 137 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHH---H
Confidence 4455556666666666666666666777777777777776666666777666666555555555555555555433 3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001620 262 EQEKSAEEAKIERKRIKDA 280 (1043)
Q Consensus 262 ere~s~eEa~~l~eRI~ea 280 (1043)
....+.+++..+..-...+
T Consensus 138 ~l~~~~eQl~~lr~ar~~L 156 (384)
T PF03148_consen 138 TLEQAEEQLRLLRAARYRL 156 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 280
>PRK04325 hypothetical protein; Provisional
Probab=79.10 E-value=10 Score=34.85 Aligned_cols=54 Identities=30% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
+..+.++|..|..|++=.+..|..++..|-+...+|+.|+..++-|-+.+.++.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677788888888888888887777777777777777777777777666554
No 281
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=79.07 E-value=26 Score=37.28 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE--TDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~E--leELqeklkeLEeEl~~Lk~dRe~L~ekLkEl 418 (1043)
.-|..+|..+.+++.+|...++.-++.|..|.+- ++++++.+.+|..++++.++.-.+++.-...+
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3366778888899999999999999999988764 68899999999988888877777776544443
No 282
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.92 E-value=44 Score=36.86 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 375 SQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 375 sqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
..+..|..+..+...+...++.|..++..|...+..+...+...+.++.+++..+..+..-...|.--+.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666655555555555555555555555555444433333333
No 283
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.85 E-value=16 Score=33.34 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 001620 356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417 (1043)
Q Consensus 356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE 417 (1043)
...|..|.++...+...++.+....+.|+.|-+....++...-.++..|+.+.+.|+.++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666555555555555443
No 284
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.61 E-value=11 Score=38.89 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET--DELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~El--eELqeklkeLEeEl~~Lk 405 (1043)
+.+|...|.++.+.+..|+..+....+.+..|...+ +++...+..|+.++..|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554444444444332 333444444444433333
No 285
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.55 E-value=96 Score=33.46 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 410 DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 410 ~L~ekLkElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
.+..+-.....++.+++.-.+.+..+..+.+.+|..
T Consensus 149 ~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 149 KLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555555555555543
No 286
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.35 E-value=27 Score=38.39 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=37.1
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 397 LEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 397 LEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
++++...+..+...|.++++....++...+.....+..|...+.--...+-.+-..|.+++.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 555556666666666666666666666666666666666555555555555555555555543
No 287
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.08 E-value=96 Score=38.92 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 200 SYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 200 qyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
.|....+|+..|+.....++-+|+.|.+.
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvsvLteq 133 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVSVLTEQ 133 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHHHHHHH
Confidence 46667788888999999999999999776
No 288
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=78.00 E-value=55 Score=37.74 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL 390 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL 390 (1043)
.|..+..+++++ +..+|+..|..+.+.+......|..+...|+.|+..+...
T Consensus 56 ~ld~~~~kl~~M---------s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 56 SLDELKEKLKEM---------SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred hhHHHHHHHHhc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544 4455666666666666666555555555555555555443
No 289
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.91 E-value=39 Score=42.67 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cchhhHHHHHHHHHHHHHHHHH
Q 001620 176 GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQG-IVIEDEEARTLMAAAALKSCRE 254 (1043)
Q Consensus 176 Ae~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~-a~IED~eARal~aE~aIksceE 254 (1043)
++.....+.+....-+..+..+....+-...+--+.+-+|.-........|-+-..+ .--+..++......+.+.+.++
T Consensus 33 ~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~ee 112 (916)
T KOG0249|consen 33 LEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEE 112 (916)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHH
Confidence 334444444444444455555555555555555555555555555444444441111 1222233444444567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHH
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESL 334 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~L 334 (1043)
....|++..+.+..++...-. ...+..--..|-+.+..+-...+. ....+..+..++.++++++.+ ++.+
T Consensus 113 kn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~------~~~~eer~~kl~~~~qe~nae---L~ra 182 (916)
T KOG0249|consen 113 KNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEH------SGNIEERTRKLEEQLEELNAE---LQRA 182 (916)
T ss_pred hhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHH---HHHH
Confidence 888888888877777665544 444433333344444333111111 011122333344444444433 4444
Q ss_pred HHHHHHHHhcCCCccccHHHH----HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 335 REKIKEQLEFGSSGSLTVTEM----AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 335 d~kInEl~eeke~a~lsV~EL----aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
..+++=-.+-+.....+|.|. -.+..++.+++..|.....+...++..++.+-+.|..-+..|-.+++.|+
T Consensus 183 rqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 183 RQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444332223334455565543 23466778888899999999999999999999999888888888888887
No 290
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=77.89 E-value=1e+02 Score=39.27 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=41.4
Q ss_pred hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620 365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444 (1043)
Q Consensus 365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft 444 (1043)
++..++..-+.....|..|+.++.+++..+..+...+..+...-.+....+..+ +..+......+.... .-.....
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~ 303 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERR 303 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333333334444555555555555555555555444443333333333332 333333333333333 3336666
Q ss_pred HHHHhHHHHHHhh
Q 001620 445 EARYNIDHLSHKL 457 (1043)
Q Consensus 445 Ea~~~L~eLseeL 457 (1043)
.+..+|.+|.+.+
T Consensus 304 kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 304 KLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHhhcCc
Confidence 7777777777643
No 291
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.88 E-value=5.9 Score=34.80 Aligned_cols=37 Identities=14% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR 395 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk 395 (1043)
|+++.+++-.++..|.....+++.++..++++.+.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555555555555555553
No 292
>PRK00736 hypothetical protein; Provisional
Probab=77.68 E-value=9.4 Score=34.59 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=19.7
Q ss_pred HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 364 nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
++|..||.+++-++..|+.|+..+...+..+..|...+..|
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444444444433
No 293
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.16 E-value=42 Score=38.11 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 380 VQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 380 IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
++.|+..+..-+.++.+-..+.+.|+.++..|.+....++..+..+....+.-+.+++-|...+..+...|+.|
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~L 114 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444443333333333333333333333333
No 294
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.02 E-value=41 Score=32.07 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001620 395 RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH 442 (1043)
Q Consensus 395 keLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~sr 442 (1043)
.+++.++..|..+|..|-.+|..++.+..+++.....|-..+...-..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888999999888888888888888887777776544433
No 295
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.59 E-value=1.2e+02 Score=35.70 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-------HHH
Q 001620 178 KEIDKLQKQILT-LQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-------AAL 249 (1043)
Q Consensus 178 ~EIerLqkeI~~-LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-------~aI 249 (1043)
.||+|+.-++-. +.+.-..=+.-+++.......++....++...+.+|+.++ +..+|.+..|.-.+- .+|
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i--~~~lekI~sREk~iN~qle~l~~eY 275 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI--SKTLEKIESREKYINNQLEPLIQEY 275 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888777741 2233344455555555555555555566666666666552 334566666666655 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 250 KSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 250 ksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
.+.+++|++++++...+.+-+......+.++.++++.+|+++..--+
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666766654433
No 296
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.44 E-value=20 Score=34.27 Aligned_cols=71 Identities=23% Similarity=0.431 Sum_probs=40.1
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
..++.+..|....-.....++.|+.+-..+.+.+..+-... .+.+.|..+.+++.+++..+......++.+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776666666666655431 244445444444444444444333333333
No 297
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.98 E-value=81 Score=31.64 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------------
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE---------------------------- 228 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE---------------------------- 228 (1043)
+.+++.|...+..|+.+.+.+..++..+...+.++..-+..+ ..+...
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l----~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL----EELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 356777777777777777777777777666666665555332 233211
Q ss_pred -hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 229 -FGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290 (1043)
Q Consensus 229 -f~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e 290 (1043)
.|.|.-+| .....++.-+...+..|+..+..+..++..+..++..+...+..+..+
T Consensus 81 ~lG~g~~vE------~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAE------KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEE------ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111222 123455555666666666666666666666666666666666555443
No 298
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.93 E-value=16 Score=35.54 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQ--TALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsq--ea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
.+..++++++....|+..+|..+.+. ...+.+|+.++.+++..++.++..+..+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455555555555555566555555 5555555555555555555555555544
No 299
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.76 E-value=17 Score=40.49 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=77.0
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTL--------------------------------------EDDK 401 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeL--------------------------------------EeEl 401 (1043)
++|+.++..++..+..+...|.+|+..|...+.....- ..=|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 56788888888888888888888888888887541110 1124
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 402 ASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 402 ~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
..+...|+..+.+..+||+++...+..+..++.++..|+.--..+-..|.-|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999988888888777
No 300
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.59 E-value=1.6e+02 Score=33.83 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=74.6
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-chhhHHHHHHHHH
Q 001620 168 KSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI-VIEDEEARTLMAA 246 (1043)
Q Consensus 168 ~SgLSfseAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a-~IED~eARal~aE 246 (1043)
+.||+ ..|..+|+.|...+..|.-|+.--..+++.+++.+.--+....+...++.-|+.+-..-. .-++.+....++.
T Consensus 9 KeGL~-~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 9 KEGLP-TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred hccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 45663 456677777777777777777777777777666665555544444444444443311000 1445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
..|...+--+.-|+.........+..+...+.+...+++.......
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777777777777777776666666666666666666665554443
No 301
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.48 E-value=3.1e+02 Score=37.15 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHH-----HHHHHHHHHH
Q 001620 175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEE-----ARTLMAAAAL 249 (1043)
Q Consensus 175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~e-----ARal~aE~aI 249 (1043)
.+...+..+++.+...++....+...++..-....+.+.++.+...+....- ..+..+.... ++.......+
T Consensus 113 ~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~---~~~~~l~~a~~~~lqae~~~l~~~~ 189 (1109)
T PRK10929 113 QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG---TPNTPLAQAQLTALQAESAALKALV 189 (1109)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCC---CCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3335677777777777777766666665555555666666666665443321 1122233211 2222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001620 250 KSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG 293 (1043)
Q Consensus 250 ksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~ 293 (1043)
...+-.+......++-+..+.+-...++..++..+..|...+..
T Consensus 190 ~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 190 DELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555566666666666666666555543
No 302
>PLN03188 kinesin-12 family protein; Provisional
Probab=75.31 E-value=3.2e+02 Score=37.28 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=60.1
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 368 NLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 368 sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
.|...+.+.-...++|+.||+.=+..-.+|.+-+..-......+-+++-+|+++...+-..-+++..-+..++.+.+.
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaak 1146 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAAR 1146 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778889999998888888888888888888888888888888888887777777777777766655543
No 303
>PRK00846 hypothetical protein; Provisional
Probab=75.05 E-value=12 Score=34.89 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=20.5
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKA 402 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~ 402 (1043)
.+..+|..||.+++-|+..|+.|+..+...+..+..|...+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444444444443
No 304
>PRK00846 hypothetical protein; Provisional
Probab=74.84 E-value=14 Score=34.53 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 349 SLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 349 ~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
+++-.++..+|+.|..+++=.+..|..++..|-+....|+.|+.+++-|-+.+.++.
T Consensus 5 ~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 5 SLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567778888888888888888888888888888888888888888877777665
No 305
>PLN02939 transferase, transferring glycosyl groups
Probab=73.98 E-value=3.1e+02 Score=36.54 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLR---TETDELQAQIRTLEDDKAS 403 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr---~EleELqeklkeLEeEl~~ 403 (1043)
+-+-+||-+|+......+.+++..- ....+|+.++..||+-+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 296 DCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3455666666665555555444322 2345666677666666553
No 306
>PRK00295 hypothetical protein; Provisional
Probab=73.73 E-value=17 Score=32.99 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
+.++|..|..|++=.+..|.+++..|-+...+|+.|+..++.|-+.+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666666666666666665555544
No 307
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.71 E-value=31 Score=31.89 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHD 427 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~ 427 (1043)
||.+|-.+-..|.=|.-|+++|+++-..|..+-..+...|+.|..+-..+..+...-|.
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666665555555555555555555544444444444333
No 308
>PRK00736 hypothetical protein; Provisional
Probab=73.45 E-value=16 Score=33.17 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
+.++|..|..|++=++..|...+..|-+....|+.|+.+++-|-+.+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666555544
No 309
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.33 E-value=21 Score=32.79 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRT 385 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~ 385 (1043)
+.|.+|...--.|....-.+...|+.|+.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444443333333333333333333333
No 310
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.55 E-value=78 Score=38.25 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=30.8
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel 422 (1043)
.+++...-.+++......+.....+...+.+.+++++.+.++...|++.-.-...+++++++..
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444555555444444555555444445555544443
No 311
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=72.50 E-value=87 Score=32.95 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001620 373 FSSQTALVQRLRTETDELQA 392 (1043)
Q Consensus 373 ISsqea~IerLr~EleELqe 392 (1043)
++......++|+.+++.++.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 312
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.25 E-value=92 Score=31.85 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 433 EDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 433 e~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
+.+...|=.=|+.+...+...+..|..
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 313
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.91 E-value=9.1 Score=44.13 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=28.6
Q ss_pred cccch-hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001620 169 SGLSK-AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYW 209 (1043)
Q Consensus 169 SgLSf-seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~ 209 (1043)
.||++ .++...|..|+.++..++.+.+......+..+..+.
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIE 46 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543 466688888888888888777777776666666663
No 314
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.81 E-value=2.9e+02 Score=35.27 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=49.2
Q ss_pred HHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHH-HHHHHHHHHHHHHHHHH
Q 001620 358 KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI-------NDKKDLS-SKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 358 kIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk-------~dRe~L~-ekLkElEeel~evq~l~ 429 (1043)
.++.|..-|..|.......-..+..|...+-+|=..+.+-.++-.... -....|. +-|+.++.++++++.+-
T Consensus 227 tl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK 306 (660)
T KOG4302|consen 227 TLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLK 306 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555444444444432221 1222222 55666777777765543
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 430 RSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 430 esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
..- ++.=+.....+|.+|-..+|-.
T Consensus 307 ~s~------mKeli~k~r~Eleel~~~~h~s 331 (660)
T KOG4302|consen 307 ASN------MKELIEKKRSELEELWRLLHYS 331 (660)
T ss_pred HHh------HHHHHHHHHHHHHHHHHHHhcc
Confidence 322 4455555566777776666644
No 315
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.66 E-value=83 Score=38.18 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=51.5
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
|..||-.|...|..|+--|+ =|++|++.+.+|=+++--.+=+..++...++.+.+-+...+...+.-+.+..+|+.
T Consensus 343 Le~kvkeLQ~k~~kQqvfvD----iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLql 418 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVD----IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQL 418 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444443332 34556666666666655555556666666666666666666666666666666666
Q ss_pred HHHHHHHhHHHHHH
Q 001620 442 HLTEARYNIDHLSH 455 (1043)
Q Consensus 442 rftEa~~~L~eLse 455 (1043)
.+.-+....-.|.+
T Consensus 419 elkK~k~nyv~LQE 432 (527)
T PF15066_consen 419 ELKKIKANYVHLQE 432 (527)
T ss_pred HHHHHhhhHHHHHH
Confidence 66666666655533
No 316
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.57 E-value=1.2e+02 Score=33.28 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
..+|-.|...+++..-.- ......+..+.....+-...+..++..+.+...+++-|+.++..|+.++..|+..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l-------~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAEL-------RNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HhHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 555666666665543322 3333344555555555555666666777777777777777777777777777666
Q ss_pred hHHH
Q 001620 408 KKDL 411 (1043)
Q Consensus 408 Re~L 411 (1043)
-..+
T Consensus 103 l~~~ 106 (202)
T PF06818_consen 103 LACA 106 (202)
T ss_pred HHhh
Confidence 6654
No 317
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=2.8e+02 Score=34.63 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHh-------HHhHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSK-------VVNLETSFSSQTALV-QRLRTETDELQAQIRTLED 399 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnK-------V~sLE~~ISsqea~I-erLr~EleELqeklkeLEe 399 (1043)
...|+.|+..++....+...+-.-|..+=+-..+|.|- |+.++.-+..++..+ +-...++.++++..+.|++
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee 499 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEE 499 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHH
Confidence 45556666666655544433333333343434444443 344443333333333 2334555666666555543
No 318
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=1e+02 Score=31.19 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=50.1
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhc------hHHHHHHHHHHHHHHHHHHHHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE---DDKASLIND------KKDLSSKLVEMEEKLLRLHDLNR 430 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE---eEl~~Lk~d------Re~L~ekLkElEeel~evq~l~e 430 (1043)
....++-..|...++..-.+...+...|.+....+.+|+ ++ +..-.. +.+..+-..++++++..+.-.+.
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD-~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED-APVYKKVGNLLVKVSKEEAVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555554444 11 111011 11333556667777777777777
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHH
Q 001620 431 SVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 431 sVe~e~~~L~srftEa~~~L~eL 453 (1043)
.++.+...++++|.++.+.|...
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666554
No 319
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.17 E-value=81 Score=38.11 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK 421 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee 421 (1043)
+..+.+...+.+++..-+..++..+-+...+..++.+++.+..++.++++....|.+....-..+
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444445555556666666666666666677777777777777776665555555444433333
No 320
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.98 E-value=1.1e+02 Score=29.74 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=54.3
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch------------HHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK------------KDLSSKLVEMEEKLLRLH 426 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR------------e~L~ekLkElEeel~evq 426 (1043)
++.+.++...+...+.....++..|..++.+...-+++|+. |..++ .+..+-+..+++++..+.
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~----l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER----LPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666665555555442 22222 123355566677777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 427 DLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 427 ~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
..+..++.+...++..+.++...|.++
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776655
No 321
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.75 E-value=19 Score=35.44 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=38.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE 420 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe 420 (1043)
|=..|...+.+|..|-.++.+|+..+.+|-+|.+.|+-++..|++.|.+++.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666667777777777777778888888888777777777777776665
No 322
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.39 E-value=2.8e+02 Score=35.41 Aligned_cols=98 Identities=16% Similarity=0.300 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS 431 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es 431 (1043)
+.++...+..+..........|..+...+..|+.++..+...+..+..++.........+...+..+...+.+.. ..+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~- 299 (670)
T KOG0239|consen 222 YADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEK- 299 (670)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-
Confidence 344444455555555555555555555555666666666666666665555555555555555555555444444 111
Q ss_pred HHHHHhhHHHHHHHHHHhHHHH
Q 001620 432 VEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 432 Ve~e~~~L~srftEa~~~L~eL 453 (1043)
.+...|+-++.++.-+|..+
T Consensus 300 --~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 300 --EERRKLHNEILELKGNIRVF 319 (670)
T ss_pred --HHHHHHHHHHHHhhcCceEE
Confidence 22222444455555555443
No 323
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.33 E-value=1.3e+02 Score=30.08 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 387 TDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 387 leELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
-.+++.++..|+..+..++..++.| -...+.+...++.++.+..++..+..++...|+++...|.+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL-------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGEL-------AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444 23333355555555555555555555555555555544443
No 324
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.20 E-value=51 Score=30.14 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 377 TALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYS 438 (1043)
Q Consensus 377 ea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~ 438 (1043)
++.|..|+..++-+..++...+.++..|..+|+.....|..+-.+...++..++.+..++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777788888888888888877777777777777777666666433
No 325
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.14 E-value=75 Score=36.10 Aligned_cols=72 Identities=13% Similarity=0.314 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel 422 (1043)
.|..+...|+.....+.++...-...++.|++.+.|++--++++++|..=.-...++-++|..+|+.+=+.-
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888999999999999999999999999999999988776677666666666666554443
No 326
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.06 E-value=50 Score=37.66 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 001620 203 NWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEE-------AKIERK 275 (1043)
Q Consensus 203 ~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eE-------a~~l~e 275 (1043)
....++-+=+.+|-++..++.+.+++. ||+.+.|.. |.-+|+....+|.+|..-++..... +..-.-
T Consensus 79 es~~~l~dRetEI~eLksQL~RMrEDW-----IEEECHRVE-AQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMREDW-----IEEECHRVE-AQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 333444444444444444444554553 888888765 3345555555555555444444433 333344
Q ss_pred HHHHHHHHHHHHHH
Q 001620 276 RIKDARDKFESLKH 289 (1043)
Q Consensus 276 RI~eaE~elesLk~ 289 (1043)
.|.--..|+++|=+
T Consensus 153 DINiQN~KLEsLLq 166 (305)
T PF15290_consen 153 DINIQNKKLESLLQ 166 (305)
T ss_pred hhhhhHhHHHHHHH
Confidence 55555666666544
No 327
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.89 E-value=2.2e+02 Score=33.63 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=4.4
Q ss_pred HHHHHHHHHhh
Q 001620 35 EKVAYTLKLIE 45 (1043)
Q Consensus 35 ~kvk~~l~li~ 45 (1043)
.-+..+|..+.
T Consensus 71 ~~~~~Il~~lr 81 (359)
T PF10498_consen 71 ATISNILDELR 81 (359)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 328
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.80 E-value=1e+02 Score=33.06 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 415 LVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 415 LkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
+..+.+....+.....+..+-+..|..
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333333443333333333333333
No 329
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.63 E-value=26 Score=43.02 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHh
Q 001620 387 TDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHK 456 (1043)
Q Consensus 387 leELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLsee 456 (1043)
+.++..-..++..|+.+|...|.+|+.+|.++..++.++++++..-+-++..|+....++...+.+|.+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5555566677888999999999999999999999999999999999999999999999999999999653
No 330
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.54 E-value=3.1e+02 Score=34.26 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 187 ILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS 266 (1043)
Q Consensus 187 I~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s 266 (1043)
|....-|+..+...+..+...+.+.+..+-++++..+.|-. .++....+....+.+|++..+.+.+++.....+
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas------~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS------AGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555555555555533 366666677777888899999999988888766
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHhhccc
Q 001620 267 AEEAK------IERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 267 ~eEa~------~l~eRI~eaE~elesLk~el~~L 294 (1043)
-.-++ +...+|..++.++...++++...
T Consensus 407 h~~~ddar~~pe~~d~i~~le~e~~~y~de~~ka 440 (654)
T KOG4809|consen 407 HNIEDDARMNPEFADQIKQLEKEASYYRDECGKA 440 (654)
T ss_pred HHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 35566777777777777766544
No 331
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=67.39 E-value=1.1e+02 Score=33.04 Aligned_cols=89 Identities=17% Similarity=0.309 Sum_probs=51.8
Q ss_pred HHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 366 VVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSK----LVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 366 V~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ek----LkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
..++....+++++.-..|+..++-.+..+..-+.|....-+....|... -.++..++..+ +.++.+-.-|.+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekL----e~LE~E~~rLt~ 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKL----EKLEKEYLRLTA 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHH----HHHHHHHHHHHH
Confidence 4566666677777777777777777777777776655544444443332 22222222222 333444444455
Q ss_pred HHHHHHHhHHHHHHhhc
Q 001620 442 HLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 442 rftEa~~~L~eLseeL~ 458 (1043)
.-.-++..|.+|.++|+
T Consensus 135 ~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 135 TQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667788888888875
No 332
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.36 E-value=43 Score=32.72 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620 377 TALVQRLRTETDELQAQIRTLEDDKASL--INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ 440 (1043)
Q Consensus 377 ea~IerLr~EleELqeklkeLEeEl~~L--k~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~ 440 (1043)
.+.++.+...+.....++..+|.++..| .++-..|+-.+.+++-++..+...++.+..+..-|-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666677777777777777 667777777777777777777666666666554443
No 333
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=67.26 E-value=30 Score=35.19 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=37.9
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620 368 NLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR 447 (1043)
Q Consensus 368 sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~ 447 (1043)
+|..++..|.+.|..++..+.++.+++..|...-......-..++.+..++..++.+|-..++........|...-.++.
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~ 113 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELR 113 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555666667777777777777777777765555666666666677777777777777777766666666666666666
Q ss_pred HhHHHHHHhhccc
Q 001620 448 YNIDHLSHKLKIQ 460 (1043)
Q Consensus 448 ~~L~eLseeL~s~ 460 (1043)
..|+.|...|..+
T Consensus 114 ~~le~l~~~l~~p 126 (141)
T PF13874_consen 114 KRLEALEAQLNAP 126 (141)
T ss_dssp -------------
T ss_pred HHHHHHHHHHcCc
Confidence 7777776666543
No 334
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.75 E-value=1.1e+02 Score=29.56 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+-+..++.++..+...+..+..++..+...+.++...|.++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666777666666666666666654
No 335
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.42 E-value=42 Score=40.81 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALV 380 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~I 380 (1043)
.+.++.++|+++...+..++.++...++++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 336
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=66.30 E-value=2.3e+02 Score=31.86 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=69.9
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQN 436 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~ 436 (1043)
|.+-.+-.+|.+.+......+..=.+.-........++..|+..+.--+....=-=+--......+......+..++.++
T Consensus 121 EmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v 200 (239)
T PF05276_consen 121 EMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777766666666666666777777777766553333222111233335556666677777778888
Q ss_pred hhHHHHHHHHHHhHHHHHHhhccc
Q 001620 437 YSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 437 ~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
..-+.+.+.+-.+|..||++||-.
T Consensus 201 ~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 201 KQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999854
No 337
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=66.04 E-value=1.6e+02 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEE 213 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~ 213 (1043)
++.+-.+...|+.+...+..+-+++...+.++++
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~ 41 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEK 41 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555433
No 338
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.81 E-value=1.9e+02 Score=31.82 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
..|+.|++.|..++....+.+...+.+-..|...=.+.+..|.+|..|=.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999998555
No 339
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=65.69 E-value=2.7e+02 Score=32.61 Aligned_cols=202 Identities=11% Similarity=0.195 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC------CCccccchhhhcccccchhhH
Q 001620 248 ALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI------PHVKDDSVKAVEESDRSDIDV 321 (1043)
Q Consensus 248 aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~------~~l~~~~le~iSeIpeLeee~ 321 (1043)
+....+-+|..++.........+..++++=.++..++..|-..+...+...+- ...+|.+ -..-.+.-|....
T Consensus 110 a~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~-aKlq~~~~l~a~~ 188 (391)
T KOG1850|consen 110 AVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGK-AKLQEIKLLTAKL 188 (391)
T ss_pred HHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 44455667777777777777777777777777777776665444332211110 0000000 0001111122211
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHH-------HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620 322 VRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEK-------IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI 394 (1043)
Q Consensus 322 ~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEk-------IdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl 394 (1043)
+.+-..+.+. -+...++ +-..|++++.. .-..-.|-.++....+..++.-..++.|++.+.+++
T Consensus 189 ee~~~~e~~~-----glEKd~l----ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~ 259 (391)
T KOG1850|consen 189 EEASIQEKKS-----GLEKDEL----AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKI 259 (391)
T ss_pred HHHHHHHHHh-----hhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111111 11233333333 333445556666777777888889999999999999
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 395 RTLEDDKASLINDKKDLSSKLVEM-------EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 395 keLEeEl~~Lk~dRe~L~ekLkEl-------Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
+.||.|-...+..-++-+..+-.| .++...++..+++++.-..+|++..+++...+..++..+..
T Consensus 260 kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 260 KKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 999999888888888777555444 34566777778888888888888888888888888776654
No 340
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=65.55 E-value=1.9e+02 Score=34.54 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=62.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHhhhhhhhcccc
Q 001620 169 SGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLA-----------KYWDIEEQIKEL----QQRVYSLQDEFGQGI 233 (1043)
Q Consensus 169 SgLSfseAe~EIerLqkeI~~LQtEKEal~sqyq~~le-----------kl~eLE~qISea----QeeV~~LQdEf~~~a 233 (1043)
.|.-|.+-.+||..++....-|+..-+.++.+|++=+. |+..||.+++++ |.+|-.|..+. |
T Consensus 258 ~~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqEl---a 334 (455)
T KOG3850|consen 258 QGAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQEL---A 334 (455)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---H
Confidence 33335666688998888888888888888887765332 455677777665 55666666552 1
Q ss_pred chhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 234 VIEDE-----EARTLMAAAALKSCRETLTQMEEEQE 264 (1043)
Q Consensus 234 ~IED~-----eARal~aE~aIksceEtL~eLEeere 264 (1043)
.+|+- -.|+..+..++++|+.+|++||-.+.
T Consensus 335 smeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 335 SMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 12566677899999999999987665
No 341
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=64.84 E-value=2.2e+02 Score=31.26 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 264 EKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 264 e~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
..+..++..+...-+.+...+.++...|.
T Consensus 65 ~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 65 ELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 33333343444444444444444444443
No 342
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.56 E-value=28 Score=32.26 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=23.9
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
.+..||+.||.+++-|+..|+.|+.-+.+.+.-+..+...+.-|.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~ 49 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT 49 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555555544444444444333
No 343
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.89 E-value=3.2e+02 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620 173 KAEGLKEIDKLQKQILTLQTDKEFVKSSYE 202 (1043)
Q Consensus 173 fseAe~EIerLqkeI~~LQtEKEal~sqyq 202 (1043)
+.....|+..+++....|+...+.++.+|.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446677777777777666666666444
No 344
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.87 E-value=82 Score=30.59 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFE 285 (1043)
Q Consensus 247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ele 285 (1043)
.+++.|.+.+..|+..+......+..+..++..+...+.
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666555555555555555555443
No 345
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=2e+02 Score=30.09 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 244 MAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290 (1043)
Q Consensus 244 ~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e 290 (1043)
.+..+++.++..+.+|.+.+..+...++.+..++..+..++..+-..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888898888888888888888888888888776544
No 346
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.03 E-value=1.1e+02 Score=36.62 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=69.7
Q ss_pred HhHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620 367 VNLETSFSSQTALVQR-LRTETDELQAQIRTLEDDKASLINDKKD------LSSKLVEMEEKLLRLHDLNRSVEDQNYSF 439 (1043)
Q Consensus 367 ~sLE~~ISsqea~Ier-Lr~EleELqeklkeLEeEl~~Lk~dRe~------L~ekLkElEeel~evq~l~esVe~e~~~L 439 (1043)
+.+..-|++.+.+|-- |+.+...++.-...++.|++.|+.-.+. |..+...+.+.-..++.++--++.+++.+
T Consensus 88 a~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~el 167 (542)
T KOG0993|consen 88 ASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINEL 167 (542)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Confidence 3445566777777765 8888888888888888888877765444 55555555555556666778889999999
Q ss_pred HHHHHHHHHhHHHHHHhhcc
Q 001620 440 QTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 440 ~srftEa~~~L~eLseeL~s 459 (1043)
....+.++..|++|+...|-
T Consensus 168 k~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 168 KKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHhHHHHHHHHHhhhcc
Confidence 99999999999999866654
No 347
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.24 E-value=1.9e+02 Score=31.08 Aligned_cols=29 Identities=34% Similarity=0.304 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 263 QEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 263 re~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
+.....++......+.+-++-|..|+.=+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444445555555555555554433
No 348
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=62.03 E-value=20 Score=35.53 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHH
Q 001620 329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQ 391 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELq 391 (1043)
.++.+|+..|++ -+.+ +..+-+-++.++|++|++|..||..++..++.|..++-=+++-.
T Consensus 15 ~~v~~lRed~r~-SEdr--sa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 15 AEVKELREDIRR-SEDR--SAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHH-HHHH--hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 346667777664 3434 44566778999999999999999999988888888776666543
No 349
>PF15294 Leu_zip: Leucine zipper
Probab=61.93 E-value=1.1e+02 Score=34.99 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
.||.+|+.+...|.+..-.+..++-.++..-..|+.++.++|.........- -...-+..+..++.+++
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~-----------~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKK-----------DLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----------cccccccchhhHHHHHH
Confidence 5555555555555555555555555555555555555555555333332210 00112344555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGS 297 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEae 297 (1043)
.+..+.+.. +.........++..+..-+.++.....+
T Consensus 201 ~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 201 ALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 665554444 2333334455566666666666555443
No 350
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.80 E-value=2.6e+02 Score=30.96 Aligned_cols=176 Identities=17% Similarity=0.228 Sum_probs=103.3
Q ss_pred ccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccch
Q 001620 230 GQGIVIEDEEAR-TLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSV 308 (1043)
Q Consensus 230 ~~~a~IED~eAR-al~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~l 308 (1043)
+.+++-+|.--| .+++.+.=---...+..|+..+-.+..+..........+..-.++|=+.+...
T Consensus 8 a~~~ltddk~iR~rll~~ge~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~-------------- 73 (222)
T KOG3215|consen 8 AQCKLTDDKNIRTRLLIDGEGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQD-------------- 73 (222)
T ss_pred hcCccchhHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhc--------------
Confidence 334444554455 45554322222345557777777777777777766666666656655444332
Q ss_pred hhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHH
Q 001620 309 KAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD 388 (1043)
Q Consensus 309 e~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~Ele 388 (1043)
++|.+.-+ + +-+.++ ..|+.|+.+.-.++..|....+.|+.|.-+|.
T Consensus 74 ----E~~mlKtq---------r-------v~e~nl-------------re~e~~~q~k~Eiersi~~a~~kie~lkkql~ 120 (222)
T KOG3215|consen 74 ----EPSMLKTQ---------R-------VIEMNL-------------REIENLVQKKLEIERSIQKARNKIELLKKQLH 120 (222)
T ss_pred ----ccchHHHH---------H-------HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 1 111111 22455555555556666666666666655555
Q ss_pred HHHH-HHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620 389 ELQA-QIRTLEDDKASLI------NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 389 ELqe-klkeLEeEl~~Lk------~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs 454 (1043)
+.+- +.. .+++..|. -.|++-...+.++.+++.++..++.++...+..-+.+|.-+-..+++|.
T Consensus 121 eaKi~r~n--rqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 121 EAKIVRLN--RQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred HHHHHHHh--HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHH
Confidence 5433 111 12222222 4677888999999999999999999999998888888887777777774
No 351
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=61.69 E-value=2.5e+02 Score=30.85 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
+||.=|+-.+-..|+|...-...+=+.-..+-+++..+......+.. +...+.++.-.|.
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~--------------------l~~~~~~K~~ELE 69 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQE--------------------LQDSLRTKQLELE 69 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH--------------------HHHHHHHhhHhHH
Confidence 77888888888888877666555544444444444444333333333 3334444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
..+.+......++..+.+.+..++.++..|+..+...
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5555555566666777777777777888887777654
No 352
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.66 E-value=24 Score=31.16 Aligned_cols=37 Identities=14% Similarity=0.418 Sum_probs=20.2
Q ss_pred hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK 401 (1043)
Q Consensus 365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl 401 (1043)
||.++|.++......|..++.++.++.+.+..+++-.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555444
No 353
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.46 E-value=34 Score=33.97 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620 368 NLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418 (1043)
Q Consensus 368 sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl 418 (1043)
++=..+...+.+|..+-.++.+|+..+.+|-+|.+.|+-++..|++.|.++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666777777778888888888888888888888888887777755
No 354
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=61.25 E-value=2e+02 Score=29.61 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLV 416 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLk 416 (1043)
-+|+.|+|+|+.+..+-....+.+.+-+.--+.|+..+..|-.|+.-|.+--++.++-++
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~ 65 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLR 65 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 357778888888777665555555555555556666666666665555544444444443
No 355
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=61.19 E-value=2.2e+02 Score=35.36 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhhHHHHHHh
Q 001620 704 TILAEYTTVLRNYKEAKKKL 723 (1043)
Q Consensus 704 ~LL~eYtsvLrnYke~k~kL 723 (1043)
.-|.+|+.=.-.|=-.||+-
T Consensus 366 ~~L~~~~~~i~~~f~~kr~~ 385 (593)
T PF06248_consen 366 TELSEFVDNIETHFANKRCQ 385 (593)
T ss_pred hHHHHHHHhHHHHHHHHHHH
Confidence 56777776666665556554
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.08 E-value=1.6e+02 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
.+..|+..++....+++.+...+..++.++..++..|
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=60.66 E-value=21 Score=41.88 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.6
Q ss_pred chhhHHh
Q 001620 688 PDWKEMF 694 (1043)
Q Consensus 688 ~~wqq~~ 694 (1043)
|..+++|
T Consensus 346 p~l~~~~ 352 (370)
T PF02994_consen 346 PALQEIL 352 (370)
T ss_dssp HHHHHHH
T ss_pred chHHHHH
Confidence 3333333
No 358
>PF15456 Uds1: Up-regulated During Septation
Probab=60.20 E-value=1e+02 Score=31.22 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
+||+.|++++..|....+.++..|. ++..+-++...++.+...-..++..- ..-...++.++..+...+.
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~--------le~k~RdAa~sl~~l~~~~~~~~~~~--~~~~~~~eeel~~~~rk~e 91 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA--------LESKIRDAAHSLSRLYSSSSRRARFS--RESSLKAEEELAESDRKCE 91 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccccCCC--cchHHHHHHHHHHHHhhHH
Confidence 8999999999999988888877665 45555555555666643311110000 0134455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001620 258 QMEEEQEKSAEEAKIERKRI 277 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI 277 (1043)
++..+...+...+..+..|+
T Consensus 92 e~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 92 ELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555555444
No 359
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.07 E-value=1.8e+02 Score=29.67 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 418 MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 418 lEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
..++..+++.-+..+......++..+.-+...|..|
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444433
No 360
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.91 E-value=94 Score=29.75 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=7.7
Q ss_pred HhHHHhhhhhHHHHHHHHHHH
Q 001620 367 VNLETSFSSQTALVQRLRTET 387 (1043)
Q Consensus 367 ~sLE~~ISsqea~IerLr~El 387 (1043)
..+...+....+.-+.+..++
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333
No 361
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.71 E-value=1.9e+02 Score=28.85 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhh-----chHHHHHHHHHHHHHHHHH
Q 001620 354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED---DKASLIN-----DKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEe---El~~Lk~-----dRe~L~ekLkElEeel~ev 425 (1043)
.|...++..+++...+...+.....++..+..++.+....+++|+. +-..++. =+.++.+-...+++++.-+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888888887777777666653 1111100 0224446667788888888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 426 HDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 426 q~l~esVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
...+..++.+...++..+.++...|..+-....
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998888855443
No 362
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.66 E-value=1.8e+02 Score=28.39 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001620 207 KYWDIEEQIKELQ 219 (1043)
Q Consensus 207 kl~eLE~qISeaQ 219 (1043)
.+..++.++++..
T Consensus 25 q~~~le~~~~E~~ 37 (110)
T TIGR02338 25 QKQQVEAQLKEAE 37 (110)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 363
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=59.57 E-value=4.2e+02 Score=33.92 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
....+-+.+++..+..++..++..+..++.+..
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444555555666666677777777776653
No 364
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.40 E-value=69 Score=35.34 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620 369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~ 429 (1043)
++++..+..+..+.|+.+++++...++..+.+...|+...++++.++..+-++-..+|+.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 6666666666667777777777666666666666666666666666665555555554433
No 365
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.32 E-value=1.3e+02 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE 417 (1043)
.+...|..+++.-+.+.+..-++.--++.+.+.+.+++...|-++..|+++...|+++...
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555556666666666666666666666666666666655443
No 366
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.04 E-value=70 Score=36.37 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 373 FSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVE 433 (1043)
Q Consensus 373 ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe 433 (1043)
.......|+..+.|++.+.+.++..|.++++++..-.++..+|.+++.+..++...+..+.
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555555444433333
No 367
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.58 E-value=4e+02 Score=32.10 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620 393 QIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 393 klkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s 459 (1043)
-++--|.|+.=|+.+.+.|+++|.-+-....=..+..+.|=.+++.++++. .|.|..|.+.|..
T Consensus 513 LLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKaka---dcdIsrLKEqLka 576 (593)
T KOG4807|consen 513 LLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKA---DCDISRLKEQLKA 576 (593)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhh---hccHHHHHHHHHH
Confidence 344446677777777788888887777777667777777777766666654 4888888877753
No 368
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.58 E-value=57 Score=30.30 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN 406 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~ 406 (1043)
..++.++|.+|.-|++--|..|...+..+-..+..++.++.+++-|-+.+..+..
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3467778899999999999999999999999999999999999988888876654
No 369
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.55 E-value=1.4e+02 Score=27.85 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=47.9
Q ss_pred HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch------------HHHHHHHHHHHHHHHHHHHH
Q 001620 361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK------------KDLSSKLVEMEEKLLRLHDL 428 (1043)
Q Consensus 361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR------------e~L~ekLkElEeel~evq~l 428 (1043)
+++++...+...+.....+|..+..++.+....+.+|+ .|.+++ ....+-+..++++...++..
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~----~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~ 77 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE----KLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKE 77 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776666655555444 233331 12234455555555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHHhH
Q 001620 429 NRSVEDQNYSFQTHLTEARYNI 450 (1043)
Q Consensus 429 ~esVe~e~~~L~srftEa~~~L 450 (1043)
+..+..+...+...+.++...|
T Consensus 78 i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444
No 370
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=58.33 E-value=1.8e+02 Score=33.54 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 001620 197 VKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEE------- 269 (1043)
Q Consensus 197 l~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eE------- 269 (1043)
.....+-+..++..++.++..++..+..++.+-+. + +.+.........+..++..+.+++.+...+...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~---~-d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV---F-DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 34455556666666777777777777777666331 1 233344445555666666666666665544432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001620 270 AKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 270 a~~l~eRI~eaE~elesLk~el 291 (1043)
+..+..++..++..+....+.+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444333
No 371
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.31 E-value=4.2e+02 Score=32.25 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=97.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcccccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001620 58 YYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLP 137 (1043)
Q Consensus 58 yy~kRpeLi~~vee~~r~Yr~Laeryd~~t~el~~~~~~~a~~~p~q~~~~~ddd~~~~~~~~~~~~~~~~~~p~~~~~p 137 (1043)
|-.-|-+-+..+.+|...|-+|++.|.++-.-.+.+..-+ .+-|++ ++
T Consensus 122 fa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~el-----------e~~d~~--------------~~------- 169 (446)
T KOG4438|consen 122 FALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKEL-----------ERFDED--------------VE------- 169 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------Hhhccc--------------cc-------
Confidence 6677888999999999999999999988877655544432 222222 11
Q ss_pred ccchhhhHHHhhhccCCCCcchhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHH
Q 001620 138 KKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWD-IEEQIK 216 (1043)
Q Consensus 138 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~SgLSfseAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~e-LE~qIS 216 (1043)
++.-. +..-++.|..|...+..+--....++.+|+..-..-.+ .-+..+
T Consensus 170 -~d~ee-----------------------------~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~ 219 (446)
T KOG4438|consen 170 -EDEEE-----------------------------VKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILN 219 (446)
T ss_pred -ccHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 11000 12223666667777777776777777777654333222 334444
Q ss_pred HHHHHHhhhhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 217 ELQQRVYSLQDEFG-QGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 217 eaQeeV~~LQdEf~-~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.+---|..|+.... -...| -.-=.++...|.....+|.+....+..+.+.++.+.+.|.-+..-...++.-+..+
T Consensus 220 al~llv~tLee~~~~LktqI---V~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i 295 (446)
T KOG4438|consen 220 ALKLLVVTLEENANCLKTQI---VQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKI 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 44444555533300 00000 00112344667777777777777777777777777777776665555555554444
No 372
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.19 E-value=1.2e+02 Score=35.75 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk 405 (1043)
-+.+-++-|++.+..|...+...+..-++|+.+++.+.++++.+=..+..+.
T Consensus 127 ~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 127 VIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888888888888888777777777666665543
No 373
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.00 E-value=2.9e+02 Score=30.27 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 206 AKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFE 285 (1043)
Q Consensus 206 ekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ele 285 (1043)
-..+.|+..+..+++++..+..+ |+++...+-..-.+ +-.+|..|+..-..+....-.+...+..++.++.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~------ie~vN~~RK~~Q~~---~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKE------IEEVNRERKRRQEE---AGEELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888888777 77655544443333 3366677777777777777777777777777777
Q ss_pred HHHHhhcccc
Q 001620 286 SLKHEFIGNE 295 (1043)
Q Consensus 286 sLk~el~~LE 295 (1043)
.++......+
T Consensus 207 ~l~~~~~~~~ 216 (221)
T PF05700_consen 207 QLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHh
Confidence 7777765543
No 374
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.89 E-value=1.8e+02 Score=35.09 Aligned_cols=55 Identities=9% Similarity=0.255 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620 354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408 (1043)
Q Consensus 354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR 408 (1043)
++..++.++.-+...+....--+.+.-+.++..+.+++..+..|.+|...|.+++
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333
No 375
>PRK14139 heat shock protein GrpE; Provisional
Probab=57.89 E-value=1.8e+02 Score=31.39 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYS 224 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~ 224 (1043)
..|..++..|+.+|..|+.+...++..|-+..+.+.+++++...-.+++..
T Consensus 28 ~~~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~ 78 (185)
T PRK14139 28 AAAEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHK 78 (185)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588999999999999999999999999999999999987654444433
No 376
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.82 E-value=1.6e+02 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 001620 209 WDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 209 ~eLE~qISeaQeeV~~LQdE 228 (1043)
.+++.+|..|+.+-.+|..+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~e 54 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQE 54 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444
No 377
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=57.27 E-value=1.7e+02 Score=33.80 Aligned_cols=87 Identities=9% Similarity=0.068 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLR----TETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH 426 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr----~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq 426 (1043)
++.+....|+++..+|.+|+..|...+..+..-. ..+..--..+.++.+.++.+..+-.....++..+..+...++
T Consensus 82 si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q 161 (301)
T PF06120_consen 82 SIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQ 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544433322211 011111112344445555555554455555555555555555
Q ss_pred HHHHHHHHHHh
Q 001620 427 DLNRSVEDQNY 437 (1043)
Q Consensus 427 ~l~esVe~e~~ 437 (1043)
..+..+..+..
T Consensus 162 ~~l~~~~~~~~ 172 (301)
T PF06120_consen 162 ATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 378
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.90 E-value=3.5e+02 Score=30.89 Aligned_cols=20 Identities=10% Similarity=0.453 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHhHHhHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLE 370 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE 370 (1043)
+.+|+..+..++.+|++=||
T Consensus 134 sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 379
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.71 E-value=2.2e+02 Score=36.34 Aligned_cols=38 Identities=3% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNE 295 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LE 295 (1043)
.++.+...+..-..=+.+|+..++.++.....++..-.
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888888888888876553
No 380
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.68 E-value=57 Score=29.35 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=35.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 188 LTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 188 ~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
-.++.|...++..+.....++.+.+.+..++..+|..|..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888889999999999999999999999999988777
No 381
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.25 E-value=1.3e+02 Score=34.50 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
|.-+..+-++++-+-+.+|.....|+.|++.. =+|+||. |-+-+-.|++++.++..++.-++.+..
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrED---------WIEEECH-----RVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMRED---------WIEEECH-----RVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334666666677777777777777654 3566665 445566677777777777777666655
Q ss_pred HH----hhHHHHHHHHHHhHHHHHHhhccc
Q 001620 435 QN----YSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 435 e~----~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
-+ ..++.=|..+..+=.-|+.-|+|+
T Consensus 139 sL~ekDkGiQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 139 SLAEKDKGIQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred hhchhhhhHHHHHhhhhhhHhHHHHHHHHH
Confidence 43 445666776666666666667765
No 382
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=55.45 E-value=2.8e+02 Score=33.50 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhccccCCCCCCCccccc
Q 001620 236 EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFE--------SLKHEFIGNEGSKKIPHVKDDS 307 (1043)
Q Consensus 236 ED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ele--------sLk~el~~LEaeke~~~l~~~~ 307 (1043)
|.+.+|..++..+-+-+...+..+.-+.+-+.++-+-+...--.+..+.+ .|-++|--+..+++....-|..
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~ 125 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEV 125 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhh
Q ss_pred hhhhcc---cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHH
Q 001620 308 VKAVEE---SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLR 384 (1043)
Q Consensus 308 le~iSe---IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr 384 (1043)
.+ ...|...+..++.++..++-+...--++|-.+ +++||..|+..--.-+-.++.||
T Consensus 126 ----eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnK----------------lm~ki~Klen~t~~kq~~leQLR 185 (552)
T KOG2129|consen 126 ----EEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNK----------------LMNKIRKLENKTLLKQNTLEQLR 185 (552)
T ss_pred ----hhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHH----------------HHHHHHHhhhhhHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHH
Q 001620 385 TETDELQAQIRTLEDDKA-SLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 385 ~EleELqeklkeLEeEl~-~Lk~dRe~L~ekLkElEeel~ 423 (1043)
.+.-+|...+..-++-+. .|=..-++|..+-+-+..+++
T Consensus 186 re~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 186 REAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 383
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.22 E-value=1.6e+02 Score=31.61 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 001620 178 KEIDKLQK 185 (1043)
Q Consensus 178 ~EIerLqk 185 (1043)
.+|..|++
T Consensus 33 ~dVi~L~e 40 (189)
T PF10211_consen 33 QDVIQLQE 40 (189)
T ss_pred HHHHHHHH
Confidence 34444443
No 384
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=55.19 E-value=15 Score=38.83 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHhh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSF 373 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~I 373 (1043)
++|+..++.++.+|.+=||.+|
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5777788888888888887776
No 385
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.17 E-value=1.3e+02 Score=30.35 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
|.++...++.+...+..|-...-+.+..+..++.++..+-..++.|+.+...+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555555555555555555555555555554433
No 386
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.74 E-value=1.9e+02 Score=28.50 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFES 286 (1043)
Q Consensus 245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~eles 286 (1043)
...+++-|..++..|++.++....++..+...+..+...+..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777776665543
No 387
>PRK11519 tyrosine kinase; Provisional
Probab=54.73 E-value=1.7e+02 Score=37.30 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhc
Q 001620 278 KDARDKFESLKHEFI 292 (1043)
Q Consensus 278 ~eaE~elesLk~el~ 292 (1043)
.=++..+..+++++.
T Consensus 270 ~fL~~ql~~l~~~L~ 284 (719)
T PRK11519 270 AFLAQQLPEVRSRLD 284 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555554443
No 388
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.40 E-value=1.4e+02 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 379 LVQRLRTETDELQAQIRTLEDDKAS 403 (1043)
Q Consensus 379 ~IerLr~EleELqeklkeLEeEl~~ 403 (1043)
.+-||+.||.+|.+++..++..-..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666655443
No 389
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.13 E-value=1.7e+02 Score=28.46 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 411 LSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 411 L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
+.+...-+++++..++.....++..+..++.++..+...|..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777888888888888888777777777777776654
No 390
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=52.98 E-value=2.6e+02 Score=28.20 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001620 207 KYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 207 kl~eLE~qISeaQeeV~~L 225 (1043)
++..+...+.+++..+..+
T Consensus 6 ~~~~l~~~~~~l~~~l~~~ 24 (202)
T PF01442_consen 6 RLDSLSSRTEELEERLEEL 24 (202)
T ss_dssp HHHHHHHHHHHHHHCHCSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 391
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.89 E-value=2.7e+02 Score=33.43 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHH----
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIK-ELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSC---- 252 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qIS-eaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksc---- 252 (1043)
..+..+..++. .++..+......|..|+.++. +.+--...||++ .-|...+|.+++..
T Consensus 212 ~~l~~~~~el~-------eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEE----------r~R~erLEeqlNd~~elH 274 (395)
T PF10267_consen 212 LGLQKILEELR-------EIKESQSRLEESIEKLKEQYQREYQFILEALQEE----------RYRYERLEEQLNDLTELH 274 (395)
T ss_pred chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHH
Confidence 45555544444 444445555555555554322 344444444444 34555666555433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccc
Q 001620 253 RETLTQMEEEQEKSAEEAK-IERKRIKDARDKFESLKHEFIGNE 295 (1043)
Q Consensus 253 eEtL~eLEeere~s~eEa~-~l~eRI~eaE~elesLk~el~~LE 295 (1043)
+.+|..|..++....+.|+ ..++|+.++.+-++++...+.++|
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544 456777888888888888888876
No 392
>PHA03011 hypothetical protein; Provisional
Probab=52.62 E-value=22 Score=34.84 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTL 397 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeL 397 (1043)
++++.++..-+.++ .+.+.+|-++..-++|.+..++.-|-.+-+.|.-|+.+++.|++.+..+
T Consensus 56 ~GD~Nai~e~ldeL-------~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDEL-------IAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 45554444444443 3466888888999999999999999999999999999999999887654
No 393
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.61 E-value=38 Score=38.72 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 389 ELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 389 ELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
.++++-..|+.||.+|...++.|+++..+++.++..++.++..+...
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666778899999999999999999999999999999998877654
No 394
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=52.56 E-value=1.2e+02 Score=27.35 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHH
Q 001620 374 SSQTALVQRLRTETDELQAQIRTLEDDKASLI-NDKKDLSSKLVEMEEKLLRLHDLN 429 (1043)
Q Consensus 374 Ssqea~IerLr~EleELqeklkeLEeEl~~Lk-~dRe~L~ekLkElEeel~evq~l~ 429 (1043)
.+-...|.+....|++...-+..++-|...+- ..|..+..+++..+.++..++..+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666677777777777776666654 566677777777777766665543
No 395
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.20 E-value=2.6e+02 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 248 ALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 248 aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
++....+++.-++..++.+......+.+++.+++..+..+-
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434444444444444444444444444444444444443
No 396
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.64 E-value=3.2e+02 Score=28.85 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=8.6
Q ss_pred HhHHHhhhhhHHHHHHHHHHH
Q 001620 367 VNLETSFSSQTALVQRLRTET 387 (1043)
Q Consensus 367 ~sLE~~ISsqea~IerLr~El 387 (1043)
.+++...-.+.+.+..|+.++
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el 67 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 397
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=51.40 E-value=2.3e+02 Score=27.21 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 001620 421 KLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 421 el~evq~l~esVe~e~~~L~s 441 (1043)
+.-.+.+....+..++..|..
T Consensus 46 kyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 46 KYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333
No 398
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=51.20 E-value=4e+02 Score=29.95 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR 253 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce 253 (1043)
..++..+..++.++..++.....+..++......+...+.++..++.+..+.+.-+..|+.=+ .....+..++...+
T Consensus 83 ~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~---~~~~~a~~~~~~a~ 159 (334)
T TIGR00998 83 AKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISR---EELDHARKALLSAK 159 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCH---HHHHHHHHHHHHHH
Confidence 344456666666666666666666666666667777777777777778888777666565433 22333344444444
Q ss_pred HHHHHHHH
Q 001620 254 ETLTQMEE 261 (1043)
Q Consensus 254 EtL~eLEe 261 (1043)
..+..++.
T Consensus 160 ~~l~~~~~ 167 (334)
T TIGR00998 160 AALNAAIQ 167 (334)
T ss_pred HHHHHHHH
Confidence 44444443
No 399
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.86 E-value=1.7e+02 Score=35.63 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=4.7
Q ss_pred HHHHHHHHHhHHH
Q 001620 440 QTHLTEARYNIDH 452 (1043)
Q Consensus 440 ~srftEa~~~L~e 452 (1043)
+.++..+..+|..
T Consensus 158 ~~~l~~l~~~l~~ 170 (525)
T TIGR02231 158 EKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 400
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=50.82 E-value=4.3e+02 Score=30.22 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001620 175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI 233 (1043)
Q Consensus 175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a 233 (1043)
.++.++...+..+..++...+.....+......+...+.++..++.+..+.+.-+..|+
T Consensus 90 ~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~ 148 (346)
T PRK10476 90 QAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGY 148 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555554444444455556666777777777777777777766555555
No 401
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=50.76 E-value=2.2e+02 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620 431 SVEDQNYSFQTHLTEARYNIDHLSHKLK 458 (1043)
Q Consensus 431 sVe~e~~~L~srftEa~~~L~eLseeL~ 458 (1043)
.+..+...+......+...++.....|.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444
No 402
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.73 E-value=2e+02 Score=29.60 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 198 KSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKR 276 (1043)
Q Consensus 198 ~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eR 276 (1043)
...|++++....-++.+++-..+.+..|+.+ |+ ..+..++...+.|.+|+........+++...++
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e------~~-------~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEE------IE-------KEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457888888888888888777777777666 33 444455555555555555555444444444333
No 403
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.43 E-value=4.6e+02 Score=30.35 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 263 QEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 263 re~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
+.-+..++.....++..++..+..++...+-+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34556666666666666777777766665433
No 404
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.35 E-value=99 Score=35.69 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=13.0
Q ss_pred HhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 367 VNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 367 ~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
+-|...-+.+.=+|+-|+-.++++++.+..+.
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~ 132 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQ 132 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333
No 405
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.32 E-value=4.4e+02 Score=30.17 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK 421 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee 421 (1043)
...||+.|+.+..-|...-++|++--++|-.-+.+|.++..+..+-.==|+.+|++-+.+
T Consensus 234 s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~ 293 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKE 293 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 356778888888888777777777777777666666666555444444444444443333
No 406
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.05 E-value=89 Score=32.18 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
++.+.+.+..||..++.....|.-|+.+++..+..+..-.+.+..|
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666665555544444444443333
No 407
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=49.95 E-value=3.9e+02 Score=29.47 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDE-EARTLMAAAALKSCRETL 256 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~-eARal~aE~aIksceEtL 256 (1043)
.++..|...+..+....+.-..+- -..-+.++..+.+.|++|+.. |+.. ..|......--..|+..+
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~R------r~~ee~r~~~i~e~i~~Le~~------l~~E~k~R~E~~~~lq~~~e~~i 72 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQR------REQEEQRFQDIKEQIQKLEKA------LEAEVKRRVESNKKLQSKFEEQI 72 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665543332222 122233334444444444333 2211 123333333344455555
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 257 TQMEEEQEK-SAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 257 ~eLEeere~-s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
..|+..... ...-...+...++.+..++..|...+
T Consensus 73 ~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i 108 (247)
T PF06705_consen 73 NNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEI 108 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544422 22233334444444444444444444
No 408
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.75 E-value=1.1e+02 Score=27.92 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 375 SQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 375 sqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
..=...++|+.|+.-|+..+..+..|-..|
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555544444443333
No 409
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.66 E-value=93 Score=37.24 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=24.5
Q ss_pred HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001620 363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRT 396 (1043)
Q Consensus 363 vnKV~sLE~~ISsqea~IerLr~EleELqeklke 396 (1043)
+++|++|.........+++.|+.+..++.+.+..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777755
No 410
>PRK12704 phosphodiesterase; Provisional
Probab=49.65 E-value=6e+02 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhhhHHHHHHhhhhh
Q 001620 704 TILAEYTTVLRNYKEAKKKLDESG 727 (1043)
Q Consensus 704 ~LL~eYtsvLrnYke~k~kL~e~E 727 (1043)
..++.|...|....++.....-|+
T Consensus 436 ~~~e~~i~rl~~le~i~~~~~gv~ 459 (520)
T PRK12704 436 ETLENYIKRLEKLEEIANSFEGVE 459 (520)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHH
Confidence 456666666666666555555554
No 411
>PRK14011 prefoldin subunit alpha; Provisional
Probab=49.58 E-value=3.2e+02 Score=28.39 Aligned_cols=39 Identities=8% Similarity=0.304 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDK 283 (1043)
Q Consensus 245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~e 283 (1043)
.+.++.-|+.++..|++.+....+-+......+.++..+
T Consensus 86 ~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 86 VSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666665544
No 412
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=49.40 E-value=4e+02 Score=29.41 Aligned_cols=69 Identities=13% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQR-LRTETDELQAQIRTLEDDKA 402 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~Ier-Lr~EleELqeklkeLEeEl~ 402 (1043)
+..+..+...+...+..+ ...+...++.|..++..|+..|......+.. +......+...+.+|..-+.
T Consensus 69 e~~i~~~~~~v~~~~~~~------~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~ 138 (247)
T PF06705_consen 69 EEQINNMQERVENQISEK------QEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFE 138 (247)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443332 3556666666666666666666655544333 23333344444444444443
No 413
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=49.20 E-value=1e+02 Score=32.38 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHH--------HHHHHHHHHHHHH
Q 001620 328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE--------TDELQAQIRTLED 399 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~E--------leELqeklkeLEe 399 (1043)
..++..++..|...-.+-..-...+.++.+++++|.++|-.|...++.....++-++++ ++++.+.+.+|..
T Consensus 50 mer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 50 MERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred HHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777766666666777888899999999999999888888777666655544 4555555555555
Q ss_pred HHHHhhhch
Q 001620 400 DKASLINDK 408 (1043)
Q Consensus 400 El~~Lk~dR 408 (1043)
.+++...+-
T Consensus 130 i~emv~~d~ 138 (157)
T COG3352 130 IVEMVIKDL 138 (157)
T ss_pred HHHHHhccc
Confidence 555444443
No 414
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=49.05 E-value=86 Score=31.92 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT 441 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s 441 (1043)
|..|+..-+..+..+...++.+...++.|+..--+....+..++.....|..++-.+-..+.-++...-.+..+...|..
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~ 114 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRK 114 (141)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhHH
Q 001620 442 HLTEARYNID 451 (1043)
Q Consensus 442 rftEa~~~L~ 451 (1043)
+|..+...|.
T Consensus 115 ~le~l~~~l~ 124 (141)
T PF13874_consen 115 RLEALEAQLN 124 (141)
T ss_dssp ----------
T ss_pred HHHHHHHHHc
Confidence 4444444443
No 415
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=49.00 E-value=3.2e+02 Score=28.21 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001620 359 IDEVVS 364 (1043)
Q Consensus 359 IdeLvn 364 (1043)
++...+
T Consensus 123 i~~~~~ 128 (213)
T PF00015_consen 123 IEEGSE 128 (213)
T ss_dssp HHHHHH
T ss_pred hhhhcc
Confidence 333333
No 416
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.55 E-value=1.1e+02 Score=32.41 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 411 LSSKLVEMEEKLLRLHDLNRSVEDQN 436 (1043)
Q Consensus 411 L~ekLkElEeel~evq~l~esVe~e~ 436 (1043)
+.+++.++++++...+...+.+..|.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 417
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=48.55 E-value=56 Score=36.82 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhh
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRL------------------------RTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerL------------------------r~EleELqeklkeLEeEl~~Lk 405 (1043)
.|..|..+...+.+.|+.||..|..|+++++.+ ...|..-+..+++||.++..|.
T Consensus 181 ki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 181 KIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
No 418
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=48.45 E-value=2.6e+02 Score=30.56 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 358 KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ 435 (1043)
Q Consensus 358 kIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e 435 (1043)
+.-.|.-.+.-++..|..+++...+|+.+++--+.....+-..-...+.+-..|..+-..+...|+.++.-+..++.+
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777766666665555544444444444444444444444444444444433
No 419
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.92 E-value=6.4e+02 Score=31.30 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620 235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN 294 (1043)
Q Consensus 235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L 294 (1043)
.+|+.-|..+.....++-..+|..+.+...++.-.-.....+|.+++.+...|..+|.++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRV 395 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666766666666666666666666666666555566667777777777777666554
No 420
>PRK11519 tyrosine kinase; Provisional
Probab=47.84 E-value=4.5e+02 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 263 QEKSAEEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 263 re~s~eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
..-+.+++..+..++..++..+..++.+..
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444555555566667777777776543
No 421
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.67 E-value=1.2e+02 Score=27.07 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620 378 ALVQRLRTETDELQAQIRTLEDDKASLIND 407 (1043)
Q Consensus 378 a~IerLr~EleELqeklkeLEeEl~~Lk~d 407 (1043)
+.|++|..++-.|..++..|..+...|+.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 422
>PLN02678 seryl-tRNA synthetase
Probab=47.62 E-value=1.1e+02 Score=37.14 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=36.3
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
.+++|..+.....+...+++.|+.+...+.+.+..+-.. .++...|.++.+++.+++..+
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~----~~~~~~l~~~~~~Lk~ei~~l 90 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA----KEDATELIAETKELKKEITEK 90 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHHH
Confidence 367777888877777778888888877777777653211 133444444444444433333
No 423
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.13 E-value=65 Score=28.69 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 375 SQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 375 sqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
....+|..++.+++.++.....|+.++..|+.+++-+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444555555555555555555555555544444443
No 424
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=46.93 E-value=2.8e+02 Score=27.19 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
|..+.....++...++......-+++....++-..+.+|..+...-.. ...+..++..++.++..-++.+..+..
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~ 79 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKN 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666666666666655443333 455666666666666655555554443
No 425
>PRK14154 heat shock protein GrpE; Provisional
Probab=46.70 E-value=3.8e+02 Score=29.59 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~ 257 (1043)
-++..|+.+|..|+.+...+...|.++.+.+.+++++...-.+++ +....+.-++.+..-+.
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~------------------~~~a~e~~~~~LLpVlD 113 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI------------------IKFGSKQLITDLLPVAD 113 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhHHh
Confidence 356667788888888888999999999999999998865433333 33334444455555555
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 258 QMEEEQEKS---AEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 258 eLEeere~s---~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
.|+.-+... ...++.+.+-|.-....+..+-..+
T Consensus 114 nLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~ 150 (208)
T PRK14154 114 SLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKH 150 (208)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 555554422 1233445555555555555444443
No 426
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=46.64 E-value=2.5e+02 Score=26.18 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 420 EKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 420 eel~evq~l~esVe~e~~~L~srf 443 (1043)
.++..++..+..++.....++.|.
T Consensus 64 ~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 64 KKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 427
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.59 E-value=2.6e+02 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 411 LSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 411 L~ekLkElEeel~evq~l~esVe~ 434 (1043)
|..++..++..+..+......++.
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 428
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.08 E-value=68 Score=31.70 Aligned_cols=49 Identities=16% Similarity=0.396 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED 399 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEe 399 (1043)
++.+|...|.++...+..|...|...-+.=.+|+.|++.|++++..++.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777777777777777777777655
No 429
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.82 E-value=3.4e+02 Score=33.58 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=7.4
Q ss_pred hhhhcccccchhh
Q 001620 308 VKAVEESDRSDID 320 (1043)
Q Consensus 308 le~iSeIpeLeee 320 (1043)
|+.++.+..-++.
T Consensus 138 le~~a~lt~~eak 150 (514)
T TIGR03319 138 LERISGLTQEEAK 150 (514)
T ss_pred HHHHhCCCHHHHH
Confidence 5566666555554
No 430
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.73 E-value=7.2e+02 Score=31.33 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620 199 SSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 199 sqyq~~lekl~eLE~qISeaQeeV~~LQdE 228 (1043)
..|+.+...+..+++++.+.+........+
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~ 186 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQR 186 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777777777776666444
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=45.73 E-value=52 Score=38.66 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001620 384 RTETDELQAQIRTLEDDKASLI 405 (1043)
Q Consensus 384 r~EleELqeklkeLEeEl~~Lk 405 (1043)
...++++++++..+|+.+..+.
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHh
Confidence 3333444444444444333333
No 432
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=45.45 E-value=1.3e+02 Score=37.66 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=13.7
Q ss_pred hHHHHHHhhhhhhHHHhh
Q 001620 822 NLDFWLRFSASFHQIQKF 839 (1043)
Q Consensus 822 NL~FwlrFSts~hqiQkF 839 (1043)
+...+|.+|-.+.=||=+
T Consensus 441 ~~~~~l~lsl~iGvi~i~ 458 (646)
T PRK05771 441 DVMTILIISLLIGVIHLF 458 (646)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445889999888887754
No 433
>PRK14147 heat shock protein GrpE; Provisional
Probab=45.43 E-value=3.3e+02 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 179 EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKE 217 (1043)
Q Consensus 179 EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISe 217 (1043)
+...|+.+|..|+.+...++..|.+..+.+.+.+++...
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888888888899999999999999888653
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.20 E-value=2.8e+02 Score=35.90 Aligned_cols=7 Identities=57% Similarity=1.080 Sum_probs=2.8
Q ss_pred hhhcccc
Q 001620 227 DEFGQGI 233 (1043)
Q Consensus 227 dEf~~~a 233 (1043)
||++.|.
T Consensus 409 DE~g~Gt 415 (771)
T TIGR01069 409 DELGAGT 415 (771)
T ss_pred cCCCCCC
Confidence 3444443
No 435
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=45.19 E-value=5.2e+02 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620 268 EEAKIERKRIKDARDKFESLKHEFI 292 (1043)
Q Consensus 268 eEa~~l~eRI~eaE~elesLk~el~ 292 (1043)
.++.....++..++..+..++..+.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777764
No 436
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.08 E-value=2.4e+02 Score=32.69 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001620 383 LRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 383 Lr~EleELqeklkeLEeEl~~L 404 (1043)
|--+++=|+.++.++++.++.|
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~ 131 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQL 131 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 437
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.04 E-value=5.2e+02 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 383 LRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 383 Lr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
+..++..-++-+.+|++++..|+.+...|.
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333
No 438
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=45.01 E-value=6e+02 Score=30.21 Aligned_cols=131 Identities=23% Similarity=0.339 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhcCC----CccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----
Q 001620 328 REDLESLREKIKEQLEFGS----SGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED---- 399 (1043)
Q Consensus 328 E~rLe~Ld~kInEl~eeke----~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEe---- 399 (1043)
..++..++..|.+...... .+...+.+..+.|.+|..+|.++...-...+..|..+...|-.|--.-+.|..
T Consensus 31 ~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~ 110 (383)
T PF04100_consen 31 RKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITT 110 (383)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777665432 34556788889999999999999999888888888888888888777666664
Q ss_pred --HHHHhhhchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 400 --DKASLINDKKDLSS-----KLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 400 --El~~Lk~dRe~L~e-----kLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
.|.+|..-.+.|+. ++.++-.-+..+..+..-+..= .++ -.+..+...+..|...|..+
T Consensus 111 LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~y-ksi-~~I~~L~~~i~~l~~~L~~q 176 (383)
T PF04100_consen 111 LKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPY-KSI-PQIAELSKRIDQLQNELKEQ 176 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcc-cCc-HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666663 3344444444444444433321 111 13444555555555555443
No 439
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=45.00 E-value=1.6e+02 Score=26.94 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 387 TDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 387 leELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srf 443 (1043)
+..|..++..|=.-+..|+.++..|..+...+..+...+...++-...++.++-+++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555556666666666666666666666666555555555544444443
No 440
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.75 E-value=4.3e+02 Score=28.42 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 377 TALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 377 ea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
...|..|+.++.+|..++..+...+..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333
No 441
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=44.49 E-value=98 Score=38.73 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHH---HHHHHHHHHH
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTL---MAAAALKSCR 253 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal---~aE~aIksce 253 (1043)
..++..|+..|..|+.|++.-...+......|-.+=..+..-.. ... .+.... .......=..
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~-----~~~---------~e~~l~~~~~~~~~~~Ls~ 206 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPE-----RTS---------FEKDLLSYSEDEESFCLSD 206 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----ccc---------chhhccccccccccCCCCH
Confidence 36777777777777777776665555555444433222211110 000 001111 1223333345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-----H
Q 001620 254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-----R 328 (1043)
Q Consensus 254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-----E 328 (1043)
+.|..|...+..+..+......++..+..++..|=..++-++.+-+.- +....-=+..-|..+..++.++.+- .
T Consensus 207 ~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F-~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk 285 (619)
T PF03999_consen 207 ENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAF-LEENSGLSLDTIEALEEELERLEELKKQNLK 285 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-hhccCcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 777777777777777777777788888888888777776665544421 1111100124566677777777655 3
Q ss_pred HHHHHHHHHHHHHHhc
Q 001620 329 EDLESLREKIKEQLEF 344 (1043)
Q Consensus 329 ~rLe~Ld~kInEl~ee 344 (1043)
.=|..+..+|.++-..
T Consensus 286 ~~I~~~R~ei~elWd~ 301 (619)
T PF03999_consen 286 EFIEKKRQEIEELWDK 301 (619)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555554443
No 442
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=44.27 E-value=5e+02 Score=32.30 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHHHHHhhhhh
Q 001620 706 LAEYTTVLRNYKEAKKKLDESG 727 (1043)
Q Consensus 706 L~eYtsvLrnYke~k~kL~e~E 727 (1043)
|.+|..|++-=.+--..|.++.
T Consensus 338 l~~f~~v~~~~~~Fe~~L~~lg 359 (593)
T PF06248_consen 338 LQEFEEVLESVEEFEEALKELG 359 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4555555554444444444443
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.24 E-value=4.4e+02 Score=34.30 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 001620 71 EAYRAYRALAERYDHI 86 (1043)
Q Consensus 71 e~~r~Yr~Laeryd~~ 86 (1043)
||+.+.-.+|..|+-.
T Consensus 276 D~l~a~a~~a~~~~~~ 291 (782)
T PRK00409 276 DFIFARARYAKALKAT 291 (782)
T ss_pred HHHHHHHHHHHHCCCc
Confidence 4555555566655543
No 444
>PRK14153 heat shock protein GrpE; Provisional
Probab=44.10 E-value=3.9e+02 Score=29.21 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=43.1
Q ss_pred hhhhcccchhhhH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 165 KLVKSGLSKAEGL-----KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKEL 218 (1043)
Q Consensus 165 ~~~~SgLSfseAe-----~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISea 218 (1043)
..-.+|-|..+|+ .++..+..+|..|+.+.+.++..|.+..+.+.+++++...-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE 73 (194)
T PRK14153 15 EARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTARE 73 (194)
T ss_pred cccccCCCHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666665 67888999999999999999999999999999999886533
No 445
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.61 E-value=6.5e+02 Score=30.17 Aligned_cols=151 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhHHHhhhccCCCCcchhhhhhhhhhcccchhhhHHHHH
Q 001620 102 PEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEID 181 (1043)
Q Consensus 102 p~q~~~~~ddd~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~SgLSfseAe~EIe 181 (1043)
|...||++++|.+.+.. ..|..|..|+-.....-..-+-.-+.| .++-
T Consensus 450 psnnpffdeedeeedfk----------dapelpeepktvpevveea~k~hdhlk----------------------selh 497 (637)
T KOG4421|consen 450 PSNNPFFDEEDEEEDFK----------DAPELPEEPKTVPEVVEEAEKLHDHLK----------------------SELH 497 (637)
T ss_pred CCCCccccchhhhhhhc----------ccccccccccccchhhhhhHHHHHHHh----------------------hhHH
Q ss_pred HHHHHHHHHHhhHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 001620 182 KLQKQILTLQTDKEFVKS---------------------------SYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIV 234 (1043)
Q Consensus 182 rLqkeI~~LQtEKEal~s---------------------------qyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~ 234 (1043)
-|..+-..||-|++-+.. -|--..++..++=.....+.+-++-++-+
T Consensus 498 llesrneelqkerdrlfvdnslvkrkleiamadaqldapapdmdqiwsi~mek~dd~lq~~q~aekalrfyeie------ 571 (637)
T KOG4421|consen 498 LLESRNEELQKERDRLFVDNSLVKRKLEIAMADAQLDAPAPDMDQIWSIFMEKFDDLLQLKQQAEKALRFYEIE------ 571 (637)
T ss_pred HhhhhhHHHHhhhhhhhhhhHHHHHHHHHhhhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 001620 235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEA----KIERKRIKDARDKFESLKHE 290 (1043)
Q Consensus 235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa----~~l~eRI~eaE~elesLk~e 290 (1043)
.+-+..-.+.++..++...+.|+.|-.....+..++ .+-...|..+.+-+.+|-+.
T Consensus 572 fe~ll~~e~aaee~lk~~~del~s~~~~~h~ledeles~r~gye~qigdlsehlasl~kd 631 (637)
T KOG4421|consen 572 FEHLLNCEEAAEEELKAKDDELASLGGALHMLEDELESTRIGYEEQIGDLSEHLASLSKD 631 (637)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHhhhHHHHHhHHHHHHHHhhhh
No 446
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.43 E-value=4.8e+02 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 262 EQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 262 ere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
.+..+..++..+..+-..+...+..|...|..|+.
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 447
>PRK12704 phosphodiesterase; Provisional
Probab=43.32 E-value=4.9e+02 Score=32.28 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=3.2
Q ss_pred ccCCCCC
Q 001620 656 ELTDTPG 662 (1043)
Q Consensus 656 ~~s~~~~ 662 (1043)
...|||+
T Consensus 245 iiddtp~ 251 (520)
T PRK12704 245 IIDDTPE 251 (520)
T ss_pred EEcCCCC
Confidence 4445543
No 448
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.31 E-value=2.8e+02 Score=33.64 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 379 LVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 379 ~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
.++.+-.+++.+....+.|..++..|......+...+.+++.+..++.......-.+-+..+-..-+-..+|+.|..+.
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 6677778888888888888888888888888888888888888877777666666665555555555555555554433
No 449
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.94 E-value=15 Score=35.94 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 168 KSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQR 221 (1043)
Q Consensus 168 ~SgLSfseAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQee 221 (1043)
.+||....-..=|+.|...+..|..+...+..+......++..++.....++..
T Consensus 15 ~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 15 MRGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 367766655566666666666666655555555555444444444444443333
No 450
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.89 E-value=3e+02 Score=27.34 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 001620 410 DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNID 451 (1043)
Q Consensus 410 ~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~ 451 (1043)
.|.+.|+.-+..+...+..++++.=.+.-|..|...+..+|+
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444455555555555555554
No 451
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.74 E-value=3e+02 Score=27.05 Aligned_cols=34 Identities=3% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001620 413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEA 446 (1043)
Q Consensus 413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa 446 (1043)
+.+.-++.++..+......+...+..++..++.+
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 452
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.69 E-value=5e+02 Score=29.93 Aligned_cols=103 Identities=14% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH----HHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM----EEKLLRLHDLNR 430 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl----Eeel~evq~l~e 430 (1043)
+.-+.+..-++..+.-..-....+.|+|-+.|++-.++++..|..=.-....+-++-.++|+++ -.++..+.-+-+
T Consensus 117 i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~ 196 (338)
T KOG3647|consen 117 IQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKS 196 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333444445555555555667788999999999999998888754444444444443333333 233333333333
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 431 SVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 431 sVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
-+...-..-+.+|.+++..+--+-.+|
T Consensus 197 qldd~~rse~~rqeeaensm~~i~ekl 223 (338)
T KOG3647|consen 197 QLDDRTRSEPIRQEEAENSMPFIPEKL 223 (338)
T ss_pred HHHHHhhhhHHHHHHHHhcchhhHHHh
Confidence 444443444555555555555554443
No 453
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.61 E-value=8.6e+02 Score=31.31 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620 261 EEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG 296 (1043)
Q Consensus 261 eere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa 296 (1043)
..++.+....+.+...|..+++++.+|-..++.+-.
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~ 89 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSI 89 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 677788888888999999999999999999987743
No 454
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.42 E-value=3e+02 Score=28.77 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=60.3
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH--------------------------
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD-------------------------- 410 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~-------------------------- 410 (1043)
..++++...+.-+...|++.++.|..|+..+.+++..+.+|+.=+. .-++.+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~-~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKG-AGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 3456666667777777888888888888888888888888875432 2111111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620 411 -------LSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS 454 (1043)
Q Consensus 411 -------L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs 454 (1043)
..+.+.-+.++++.+....+.++..+.-|..+...+...+..+-
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12556666666666666666666665555555555555555543
No 455
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.29 E-value=5.1e+02 Score=29.11 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L 225 (1043)
.++..|+.+|..|+.+...++.+|.+..+.+.+++++...-++++..+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~ 114 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQ 114 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999976555444433
No 456
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.03 E-value=50 Score=42.90 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV 432 (1043)
Q Consensus 353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esV 432 (1043)
.+..-.+..|.++...+...++.....|+.+..++++++..+..|+..+.......+.|...|..+..+....+.....+
T Consensus 480 ~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l 559 (847)
T KOG0998|consen 480 QEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLL 559 (847)
T ss_pred hccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhh
Confidence 34444467888888888888888888888888888888888877777766655554555555555544444444444444
Q ss_pred HHH
Q 001620 433 EDQ 435 (1043)
Q Consensus 433 e~e 435 (1043)
+..
T Consensus 560 ~~~ 562 (847)
T KOG0998|consen 560 DDS 562 (847)
T ss_pred hhh
Confidence 433
No 457
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=41.86 E-value=4.5e+02 Score=27.86 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHH-HHHHHHHHHHHHHHHHHH
Q 001620 180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEA-RTLMAAAALKSCRETLTQ 258 (1043)
Q Consensus 180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eA-Ral~aE~aIksceEtL~e 258 (1043)
|.+.......|+.......-.+..+...+..-..++......+...... |.+.-. ...-....|..|..=...
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~r------i~~m~~gg~~f~i~~~~~~~~~r~~ 83 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDAR------IDAMMTGGAPFSIDEYLALRRYRDV 83 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHcCCCCccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 001620 259 MEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKK 299 (1043)
Q Consensus 259 LEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke 299 (1043)
|......+..+...+...+..+..++......|..+....+
T Consensus 84 l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 84 LEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
No 458
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.84 E-value=2.2e+02 Score=30.36 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 001620 378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL 428 (1043)
Q Consensus 378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l 428 (1043)
..-.+|+.++.+|+.+++.|+.++..|..+...+.+.++.|-.=+++.+.+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666655555555555555554443
No 459
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=41.24 E-value=1.7e+02 Score=33.17 Aligned_cols=96 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccchhhHHHHHHHHHHHHHHHHH
Q 001620 186 QILTLQTDKEFVK----------SSYENWLAKYWDIEEQIKELQQRVYSLQDEF-GQGIVIEDEEARTLMAAAALKSCRE 254 (1043)
Q Consensus 186 eI~~LQtEKEal~----------sqyq~~lekl~eLE~qISeaQeeV~~LQdEf-~~~a~IED~eARal~aE~aIksceE 254 (1043)
+|..++.|.++.+ ..-.+++.+.-++|.+++++.=---.|-..| .-+..-=+.-.....+.++|..|++
T Consensus 187 ~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEE 266 (311)
T PF04642_consen 187 QLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEE 266 (311)
T ss_pred ccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 255 TLTQMEEEQEKSAEEAKIERKRIKDAR 281 (1043)
Q Consensus 255 tL~eLEeere~s~eEa~~l~eRI~eaE 281 (1043)
.|.+|++.|.....-++....|--+|.
T Consensus 267 kl~kmeE~Qa~~l~~aR~~errkvraq 293 (311)
T PF04642_consen 267 KLKKMEEEQAEMLRAARTEERRKVRAQ 293 (311)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHH
No 460
>PF15456 Uds1: Up-regulated During Septation
Probab=41.01 E-value=3.2e+02 Score=27.78 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 417 EMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 417 ElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
..++++....+.++.+..++..+..+.++
T Consensus 78 ~~eeel~~~~rk~ee~~~eL~~le~R~~~ 106 (124)
T PF15456_consen 78 KAEEELAESDRKCEELAQELWKLENRLAE 106 (124)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=5.5e+02 Score=32.30 Aligned_cols=158 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc
Q 001620 234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE 313 (1043)
Q Consensus 234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe 313 (1043)
|-+++..-+-.+...++.-..+|+.++++|+...+.+..+.+|++++-.+-+.|.+.+..|-..-.. +.
T Consensus 582 V~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~-----------~l 650 (741)
T KOG4460|consen 582 VKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS-----------EL 650 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc-----------cC
Q ss_pred cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620 314 SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393 (1043)
Q Consensus 314 IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek 393 (1043)
-+...++ .++..+-.|+..-+.-|+.-|+.+--++.....-+..-.+....-.=++- ..+
T Consensus 651 p~l~~AE------------------rdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q 710 (741)
T KOG4460|consen 651 PVLSDAE------------------RDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQ 710 (741)
T ss_pred CcchhHH------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHH
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620 394 IRTLEDDKASLINDKKDLSSKLVEMEEKL 422 (1043)
Q Consensus 394 lkeLEeEl~~Lk~dRe~L~ekLkElEeel 422 (1043)
-+.+.+=++.|....+++..+.+-++.-+
T Consensus 711 ~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 711 RKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 462
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.85 E-value=4.2e+02 Score=27.18 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred HhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620 367 VNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL-VEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445 (1043)
Q Consensus 367 ~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekL-kElEeel~evq~l~esVe~e~~~L~srftE 445 (1043)
++|...+..+...++.|+.........+..+......|...+..|.... ..+ ..++.+|+-.+-.+ ...+..
T Consensus 30 ~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~---q~EldDLL~ll~Dl----e~K~~k 102 (136)
T PF04871_consen 30 SSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEA---QSELDDLLVLLGDL----EEKRKK 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHhH----HHHHHH
Confidence 4455555555555555555444444444444444444444444444221 222 23344444444443 667777
Q ss_pred HHHhHHHHHHhhcc
Q 001620 446 ARYNIDHLSHKLKI 459 (1043)
Q Consensus 446 a~~~L~eLseeL~s 459 (1043)
+...|..|-..|-+
T Consensus 103 yk~rLk~LG~eVSd 116 (136)
T PF04871_consen 103 YKERLKELGEEVSD 116 (136)
T ss_pred HHHHHHHcCCCccC
Confidence 77777777666543
No 463
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.74 E-value=5.7e+02 Score=28.70 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 189 TLQTDKEFVKSSYENWLAKYWDIEEQI 215 (1043)
Q Consensus 189 ~LQtEKEal~sqyq~~lekl~eLE~qI 215 (1043)
.||.|.+-+.-..+.+++-+.++=.++
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~ 31 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKV 31 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444443
No 464
>PRK14145 heat shock protein GrpE; Provisional
Probab=40.60 E-value=5.3e+02 Score=28.27 Aligned_cols=96 Identities=8% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL 256 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL 256 (1043)
..++..|+.++..|+.+...+...|.++.+.+.+++++...=.+++ +.-..+.-++.+..-+
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~------------------~~~a~e~~~~~LLpV~ 105 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM------------------VEYGKEQVILELLPVM 105 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhHH
Confidence 3778899999999999999999999999999999999865333333 3333344444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620 257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el 291 (1043)
..|+.-+.. ..+...+..-|.-....+.++-..+
T Consensus 106 DnLerAl~~-~~~~~~l~~Gv~mi~k~l~~vL~k~ 139 (196)
T PRK14145 106 DNFERALAS-SGDYNSLKEGIELIYRQFKKILDKF 139 (196)
T ss_pred hHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHC
Confidence 555544433 2233444455555555555554444
No 465
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.51 E-value=2.3e+02 Score=30.14 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 373 FSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434 (1043)
Q Consensus 373 ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~ 434 (1043)
+.+.......+..|...|+..+..|...+..|..+...|..++..++++...+=..+.+++.
T Consensus 92 l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 92 LKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777777777777777777777777777777666666666554
No 466
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.39 E-value=3.1e+02 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001620 196 FVKSSYENWLAKYWDIEEQIKEL 218 (1043)
Q Consensus 196 al~sqyq~~lekl~eLE~qISea 218 (1043)
.+..+|..+..++..++.++.++
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 467
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.18 E-value=4.2e+02 Score=30.38 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620 330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK 409 (1043)
Q Consensus 330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe 409 (1043)
.|.++-.++.-++-+-......+.+--+.+-...--|.+.|..|.-....-..+..+|..|+.+ +.
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k-------------~P- 162 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK-------------DP- 162 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------T-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc-------------CC-
Confidence 4555555555544443323333343334444444444444444444444444444444333221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620 410 DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ 440 (1043)
Q Consensus 410 ~L~ekLkElEeel~evq~l~esVe~e~~~L~ 440 (1043)
-..+|..++.++.+++..+-..+.++.++.
T Consensus 163 -~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 163 -QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 123566666666666666666666665553
No 468
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.69 E-value=1.5e+02 Score=36.41 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 001620 332 ESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDL 411 (1043)
Q Consensus 332 e~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L 411 (1043)
++|..+++-.-++- ..-+.+|..++++|-.|...=...-+.|.+++...-+|..|+-.|=-..+.|+..---|
T Consensus 337 ~dL~~R~K~Q~q~~-------~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L 409 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEV-------KQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYAL 409 (508)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 67777777655543 45566777888888888777777778888888888888888877776666666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620 412 SSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453 (1043)
Q Consensus 412 ~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL 453 (1043)
...=.+|+.+++.+...+..= +-+..|++++-+.+.-.
T Consensus 410 ~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 410 TPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQ 447 (508)
T ss_pred CccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhh
Confidence 444445555555554443333 33444444444444433
No 469
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.63 E-value=7e+02 Score=32.50 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
+.+-|+.|......++....+......+++....+++.+.+.|+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333333333444433
No 470
>PF14282 FlxA: FlxA-like protein
Probab=39.11 E-value=2e+02 Score=28.14 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 208 YWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQ 263 (1043)
Q Consensus 208 l~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeer 263 (1043)
|..|..+|..+++++..|.+. .....+....+..++...|..++.-|..|+.++
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444331 111223333344444444444444444444433
No 471
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.06 E-value=2.5e+02 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 246 AAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARD 282 (1043)
Q Consensus 246 E~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ 282 (1043)
+.+++-++..+..|.+.+..+...+..+...+..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444443
No 472
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=6.2e+02 Score=28.54 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS 431 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es 431 (1043)
-+.++.+-...--.|...+.+.++++.+...-+++.+...--++.+..+++.+-+.|...++-++++++.....+..
T Consensus 49 far~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 49 FARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33344444444445555556666666666666666666666777777777776666666666666666655444433
No 473
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.78 E-value=5e+02 Score=27.47 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhh
Q 001620 177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIE----EQIKELQQRVYSLQD 227 (1043)
Q Consensus 177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE----~qISeaQeeV~~LQd 227 (1043)
..++..|+.....|.++...-+....+...++..++ .+..+++..|..|+.
T Consensus 49 ~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~ 103 (158)
T PF09744_consen 49 EVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEE 103 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999888877777777777776443 334444444444433
No 474
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=38.76 E-value=84 Score=29.87 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 213 EQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL----TQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288 (1043)
Q Consensus 213 ~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL----~eLEeere~s~eEa~~l~eRI~eaE~elesLk 288 (1043)
..++.++.+|..||.. +++..+-...++.++.---..+ .-|-.....+-.+++.++..|..++..+.+|.
T Consensus 8 ~~r~~LeqeV~~Lq~~------L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQ------LQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred hHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655 4443344444444443322222 34445566666677777777777777777776
Q ss_pred Hhh
Q 001620 289 HEF 291 (1043)
Q Consensus 289 ~el 291 (1043)
..+
T Consensus 82 ~~l 84 (88)
T PF14389_consen 82 RQL 84 (88)
T ss_pred HHH
Confidence 554
No 475
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.38 E-value=1.5e+02 Score=33.31 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620 385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL 425 (1043)
Q Consensus 385 ~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev 425 (1043)
.-+-+|+.++..|..|+..|++..+.+..++..+.++...+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666655555544443
No 476
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.30 E-value=1.1e+02 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTL 397 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeL 397 (1043)
++..|...|..+...+..|...|...-+.=.+|+.|++.|++++.++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666666666655
No 477
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=4.3e+02 Score=27.24 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HH--------------------HHHhhhchHHHHHHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE---DD--------------------KASLINDKKDLSSKLV 416 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE---eE--------------------l~~Lk~dRe~L~ekLk 416 (1043)
++..|+-+-+-.++..+.+.|+..+.+++.|...-.+++ ++ ...|.+....+..+|.
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~ 98 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE 98 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620 417 EMEEKLLRLHDLNRSVEDQNYSFQTHL 443 (1043)
Q Consensus 417 ElEeel~evq~l~esVe~e~~~L~srf 443 (1043)
.++.++..+...+..+... |..+|
T Consensus 99 ~les~~e~I~~~m~~LK~~---LYaKF 122 (131)
T KOG1760|consen 99 ELESELESISARMDELKKV---LYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHh
No 478
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.07 E-value=1.6e+02 Score=27.41 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 394 IRTLEDDKASLINDKKDLSSKLVEMEEKLL-RLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 394 lkeLEeEl~~Lk~dRe~L~ekLkElEeel~-evq~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
+++.+..+..|+.++=+|+-+|.-+++.+. ..-.-++.+..++..|+.....+..++..+...|
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLL 66 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.98 E-value=1.9e+02 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001620 362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRT 396 (1043)
Q Consensus 362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklke 396 (1043)
.+++|+.+....-....+++.|+.+.+...+.+..
T Consensus 28 ~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777666666654
No 480
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=37.23 E-value=2.2e+02 Score=33.67 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhhhhccccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-H
Q 001620 197 VKSSYENWLAKYWDIEEQIKELQ-----QRVYSLQDEFGQGIVIEDEEARTLMAA---AALKSCRETLTQMEEEQEKS-A 267 (1043)
Q Consensus 197 l~sqyq~~lekl~eLE~qISeaQ-----eeV~~LQdEf~~~a~IED~eARal~aE---~aIksceEtL~eLEeere~s-~ 267 (1043)
+...++.+..++.+|+..+++-. ++...+..+. ++...+. .+|+..++.|...++-.... .
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~----------a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D 74 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEY----------AELEPIVEKYREYKKAQEDLEDAKEMLAEEKD 74 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45566777777777777777664 4444444331 2222222 34444444444444433321 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhccccCCC
Q 001620 268 EEAK-IERKRIKDARDKFESLKHEFIGNEGSK 298 (1043)
Q Consensus 268 eEa~-~l~eRI~eaE~elesLk~el~~LEaek 298 (1043)
.+|. ...+.|.+++.++..|..++..|--.+
T Consensus 75 ~em~ema~~Ei~~~~~~~~~le~~L~~lLlPk 106 (363)
T COG0216 75 PEMREMAEEEIKELEAKIEELEEELKILLLPK 106 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2332 234556666666666666665553333
No 481
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.95 E-value=1.1e+02 Score=37.39 Aligned_cols=17 Identities=12% Similarity=0.466 Sum_probs=8.6
Q ss_pred HHHhHHHHHHhhhhhhH
Q 001620 819 LEENLDFWLRFSASFHQ 835 (1043)
Q Consensus 819 LEENL~FwlrFSts~hq 835 (1043)
++.==+|||+.--.||=
T Consensus 373 a~~LadyYik~Aeq~~P 389 (475)
T PRK13729 373 AQTLSDYYIKRAEQYHP 389 (475)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33334566665555553
No 482
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.82 E-value=1.5e+02 Score=31.28 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001620 409 KDLSSK 414 (1043)
Q Consensus 409 e~L~ek 414 (1043)
+.|+++
T Consensus 178 ~~LkkQ 183 (192)
T PF05529_consen 178 EALKKQ 183 (192)
T ss_pred HHHHHH
Confidence 333333
No 483
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.63 E-value=21 Score=34.90 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED 399 (1043)
Q Consensus 357 EkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEe 399 (1043)
+-++.+...+..|...+..+..+|.+|+..+..++.....|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3334444444444433333333444444444333333333333
No 484
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=36.51 E-value=3.5e+02 Score=25.04 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 001620 391 QAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNR 430 (1043)
Q Consensus 391 qeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~e 430 (1043)
...+..+...+..+....+.....+.++..++..+..+..
T Consensus 58 ~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 58 EQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444433333
No 485
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=36.46 E-value=3.3e+02 Score=34.69 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 001620 371 TSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNI 450 (1043)
Q Consensus 371 ~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L 450 (1043)
.+.....+.|++|+.+|..+...|+.++.+++.-...+..+..++.+...+.-=++.-.+.++.+ ...|.+....|
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~----~~~l~e~~~rl 154 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQ----RRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHhhc
Q 001620 451 DHLSHKLK 458 (1043)
Q Consensus 451 ~eLseeL~ 458 (1043)
..--+.++
T Consensus 155 ~~~~~~~q 162 (632)
T PF14817_consen 155 QGQVEQLQ 162 (632)
T ss_pred HHHHHHHH
No 486
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=36.32 E-value=3.7e+02 Score=27.87 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCchh
Q 001620 419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDE 464 (1043)
Q Consensus 419 Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~~~ 464 (1043)
+.....++.....+...+..-+.++.++..+-+.|+.=-..+.|++
T Consensus 60 ~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd~ 105 (135)
T TIGR03495 60 EEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLPDD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcHH
Confidence 3333344444444444444444455555555555555555566664
No 487
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=36.28 E-value=98 Score=33.14 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=38.0
Q ss_pred CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620 345 GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS 412 (1043)
Q Consensus 345 ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ 412 (1043)
+.|.++..+.+..+|+-|..+|..|...|.+...+. +...+..|+-||.+|+..++...
T Consensus 100 ~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~---------~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 100 NQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKD---------LNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 578889998888888888888888888887644321 12224444455555555554444
No 488
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.11 E-value=1.1e+02 Score=37.46 Aligned_cols=16 Identities=6% Similarity=0.273 Sum_probs=6.2
Q ss_pred hchHHHHHHHHHHHHH
Q 001620 406 NDKKDLSSKLVEMEEK 421 (1043)
Q Consensus 406 ~dRe~L~ekLkElEee 421 (1043)
..+.++..+|++++.+
T Consensus 97 aq~~dle~KIkeLEaE 112 (475)
T PRK13729 97 KQRGDDQRRIEKLGQD 112 (475)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3333444444433333
No 489
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.95 E-value=2.6e+02 Score=30.25 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001620 256 LTQMEEEQEKSAEEAKIERKRIK 278 (1043)
Q Consensus 256 L~eLEeere~s~eEa~~l~eRI~ 278 (1043)
+.+||+++..+..+.+.-++|+.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLK 140 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555555555554443
No 490
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=35.80 E-value=5.8e+02 Score=31.26 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 195 EFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIER 274 (1043)
Q Consensus 195 Eal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~ 274 (1043)
....+..+.+...+.+-.+.+.+++-+-..-... || +|+.-..--+.||++..
T Consensus 318 kka~~~~~~~~~~l~~k~k~~~e~~~~~~~kk~~------~e---------------------eLESIVRiKqAEA~MFQ 370 (446)
T PF07227_consen 318 KKARLALETCDRELEDKAKEVAELQFERQRKKPQ------IE---------------------ELESIVRIKQAEAKMFQ 370 (446)
T ss_pred hhhhhhhhhhhhHHHhhhhhhhhhhHHhhhcccc------hH---------------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHH
Q 001620 275 KRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTE 354 (1043)
Q Consensus 275 eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~E 354 (1043)
.|.++|+.+++.|+.-+ .....+|.|..-.+ |+.+++.|
T Consensus 371 ~kAdEARrEAE~LqrI~----------------------------------------~aK~~k~EEEYas~-~~kl~l~e 409 (446)
T PF07227_consen 371 LKADEARREAEGLQRIA----------------------------------------LAKSEKIEEEYASR-YLKLRLNE 409 (446)
T ss_pred HHHHHHHHHHHHHHHHH----------------------------------------HHhHHHHHHHHHHH-HHhhhhHH
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL 390 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL 390 (1043)
..++...+.+++.-+|..--.....--|+..+|.+|
T Consensus 410 aee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 410 AEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
No 491
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.58 E-value=4.4e+02 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHH----HHHHHHHHH
Q 001620 360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN---DKKDLSSKLVEMEEKLL----RLHDLNRSV 432 (1043)
Q Consensus 360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~---dRe~L~ekLkElEeel~----evq~l~esV 432 (1043)
+++..-....-..|....+.+..+..+++.++..+.+....+..|+. +.++|+.+|..++.+.. ..+..+..+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHH
Q 001620 433 EDQNYSFQTHLTEA 446 (1043)
Q Consensus 433 e~e~~~L~srftEa 446 (1043)
.- ..+|...+..+
T Consensus 82 ~~-~~ai~~al~~a 94 (155)
T PF06810_consen 82 KK-DSAIKSALKGA 94 (155)
T ss_pred HH-HHHHHHHHHHc
No 492
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.50 E-value=2.1e+02 Score=29.85 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 001620 352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT---ETDELQAQIRTLEDDKASLINDKKDLSSKLV 416 (1043)
Q Consensus 352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~---EleELqeklkeLEeEl~~Lk~dRe~L~ekLk 416 (1043)
|.....+++.+...+.+++..+.....+|+.|+. .+++|++++.+|+.+......+-..-...++
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.50 E-value=6.3e+02 Score=27.68 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 194 KEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIE 273 (1043)
Q Consensus 194 KEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l 273 (1043)
.+++...-..+...+..|..+...-..+|..=.++. ..+...+...+.+.+-+.+..++.|+.+.. .+..+
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l-----~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq----~l~~~ 76 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQEL-----VSRYAKQTSELQDQLLQKEKEQAKLQQELQ----ALKEF 76 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHH
Q 001620 274 RKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVT 353 (1043)
Q Consensus 274 ~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ 353 (1043)
...-...+.+|.+|+.++.....+... ..+--....=-....++++-.+..+.
T Consensus 77 ~~~k~~qe~eI~~Le~e~~~~~~e~~~---------------------------~l~~~~~qfl~EK~~LEke~~e~~i~ 129 (206)
T PF14988_consen 77 RRLKEQQEREIQTLEEELEKMRAEHAE---------------------------KLQEAESQFLQEKARLEKEASELKIL 129 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHH-HHhHHhHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 001620 354 EMAEKIDEV-VSKVVNLET-SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL 428 (1043)
Q Consensus 354 ELaEkIdeL-vnKV~sLE~-~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l 428 (1043)
.+++....- .-|+..|+. ++.+..+-...+..|+-.|++.+.-|-.+...|...++.|..+-..+..+..=+.++
T Consensus 130 ~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 130 QLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred HhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 494
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=35.45 E-value=8.5e+02 Score=29.20 Aligned_cols=213 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 188 LTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSA 267 (1043)
Q Consensus 188 ~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~ 267 (1043)
..++...+.....+.....++.+++.++..+...+...... ..+.......-...
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~-------------------------~~l~~~~~~~~~~~ 238 (458)
T COG3206 184 DQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQ-------------------------HGLTDAARGQLLSE 238 (458)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------cCCcccccchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-HHH-HHHHHHHHHHHHhcC
Q 001620 268 EEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-RED-LESLREKIKEQLEFG 345 (1043)
Q Consensus 268 eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E~r-Le~Ld~kInEl~eek 345 (1043)
.++..++..+..++.......+.+......... ......+... +.. |++|+.+.......-
T Consensus 239 ~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~-----------------~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~ 301 (458)
T COG3206 239 QQLSALNTQLQSARARLAQAEARLASLLQLLPL-----------------GREAAALREVLESPTIQDLRQQYAQVRQQI 301 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------cccchhhhHHhccHHHHHHHHHHHHHHHHH
Q ss_pred CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhchHHHH---HHHHHHHHH
Q 001620 346 SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE-TDELQAQIRTLEDDKASLINDKKDLS---SKLVEMEEK 421 (1043)
Q Consensus 346 e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~E-leELqeklkeLEeEl~~Lk~dRe~L~---ekLkElEee 421 (1043)
......+...+-.+..+...+..++..+..--.+|-.-..- .+-++.++.+|+.+...++.....+. -++.+|+.+
T Consensus 302 ~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re 381 (458)
T COG3206 302 ADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELERE 381 (458)
T ss_pred HHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 001620 422 LLRLHDLNRSVEDQNYSFQTH 442 (1043)
Q Consensus 422 l~evq~l~esVe~e~~~L~sr 442 (1043)
+...+...+.+=.+...+...
T Consensus 382 ~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 382 AEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 495
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.44 E-value=2.8e+02 Score=25.86 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRL-RTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerL-r~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ 423 (1043)
|+.|..+.|+.|....=+|..+|--.+..+..+ ..-+.++-..--+|..++..|+.+...++..|.+++..+.
T Consensus 1 tlrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 1 TLREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.37 E-value=7.4e+02 Score=28.44 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620 319 IDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE 398 (1043)
Q Consensus 319 ee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE 398 (1043)
.++...++--.+|-..-..|-.++... .++.+.......+-.++..-=....+.|..+..++...+..+..+.
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE-------~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~ 189 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKE-------VELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLA 189 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhch-------HhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 399 DDKASLINDKKDLSSKLVEMEEKLLRLH-------DLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 399 eEl~~Lk~dRe~L~ekLkElEeel~evq-------~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
.+.+.|....++.+.+|...+.++..+| +-.+.++.++..+.....+--.+++-|..+|
T Consensus 190 ~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 190 SDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 497
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.24 E-value=7.9e+02 Score=32.68 Aligned_cols=260 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhccccchhhHHHHHHHHHHH
Q 001620 174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQ-----DEFGQGIVIEDEEARTLMAAAA 248 (1043)
Q Consensus 174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQ-----dEf~~~a~IED~eARal~aE~a 248 (1043)
..+++.+..|+-+--+.+.+--.+... +.....+--++.+|..++..+..+. .+ |+..-.+..+.+..
T Consensus 299 sn~~EtlnTl~ya~Rak~iknk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~e------i~sl~~e~~~l~~~ 371 (913)
T KOG0244|consen 299 SNAQETLNTLRYADRAKQIKNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKAGDELDAE------INSLPFENVTLEET 371 (913)
T ss_pred hhhhhHHHHHHHhhHHHHhcccccccc-cHHHHHHHHHHHHHHHHHHHHHhhccccchhH------Hhhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc---cccchhhHhhhh
Q 001620 249 LKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE---SDRSDIDVVRTA 325 (1043)
Q Consensus 249 IksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe---IpeLeee~~~l~ 325 (1043)
+........+--.....-..-.-........+..-+...+..+..-+.+... .+ ++.....++.-.
T Consensus 372 ~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~-----------~~~~~L~~~~~~v~~~~ 440 (913)
T KOG0244|consen 372 LDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDAS-----------DKSASLPKPLEPVDSGT 440 (913)
T ss_pred HHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhh-----------hccccCCcccccccccc
Q ss_pred hh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620 326 QD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL 404 (1043)
Q Consensus 326 eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L 404 (1043)
++ -.+...-...-.+...... .+...++..+.-....++..+..-++.+.++-.+..++.......|.+...|
T Consensus 441 ~e~~~~~~~~~~e~~~~~~~~~------~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~l 514 (913)
T KOG0244|consen 441 EEIGMNTDTSGDEAAEKELSET------IGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTL 514 (913)
T ss_pred ccccccccCCCchhhhcccccC------ccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhH
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620 405 INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ 460 (1043)
Q Consensus 405 k~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~ 460 (1043)
..+...++.+...+..++..+.. -.....+.=......++..+..|...+.++
T Consensus 515 e~e~~~le~E~~~l~~el~~~~~---~~~kl~eer~qklk~le~q~s~lkk~l~~~ 567 (913)
T KOG0244|consen 515 EAEKSPLESERSRLRNELNVFNR---LAAKLGEERVQKLKSLETQISLLKKKLSSQ 567 (913)
T ss_pred HHHhcccccccHHHHHHHHhhhH---HHHHhhhHHHHHHHHHHHHHHHHHHhhHHH
No 498
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.22 E-value=1.5e+02 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 001620 355 MAEKIDEVVSKVVNLETSFSSQTALV----------QRLRTETDELQAQIRTLEDDKASLINDKKD 410 (1043)
Q Consensus 355 LaEkIdeLvnKV~sLE~~ISsqea~I----------erLr~EleELqeklkeLEeEl~~Lk~dRe~ 410 (1043)
.+.+||.+.++++.....+...+..+ ..|..|...+.+++...|.++..|+.++.+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
No 499
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.21 E-value=3e+02 Score=33.82 Aligned_cols=78 Identities=14% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620 380 VQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH-DLNRSVEDQNYSFQTHLTEARYNIDHLSHKL 457 (1043)
Q Consensus 380 IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq-~l~esVe~e~~~L~srftEa~~~L~eLseeL 457 (1043)
|..|=..+-+++.++.+|..+.+.|+.+++.|+.+...+...+...= ...+.+..+...|+.....+...|+.|..+|
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=34.94 E-value=3.5e+02 Score=28.23 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620 197 VKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKR 276 (1043)
Q Consensus 197 l~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eR 276 (1043)
+-.+|..+++.+.+....-..+...+..++.+ ++ ..+.-...-|+.++..+.-+..+.+.+.+..+....+
T Consensus 6 l~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~------~~---~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~ 76 (162)
T PF05565_consen 6 LTDEYLELLELLEEGDLDEEAIADTLESIEDE------IE---EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENR 76 (162)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------HH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhc
Q 001620 277 IKDARDKFESLKHEFI 292 (1043)
Q Consensus 277 I~eaE~elesLk~el~ 292 (1043)
++.+..-+...+...+
T Consensus 77 ~~~Lk~yL~~~m~~~g 92 (162)
T PF05565_consen 77 IDRLKEYLLDAMEAAG 92 (162)
T ss_pred HHHHHHHHHHHHHHcC
Done!