Query 001620
Match_columns 1043
No_of_seqs 184 out of 212
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 17:47:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001620.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_915-919//hhsearch_pdb/001620hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 106.4 11.5 12 23-34 594-605 (1184)
2 1c1g_A Tropomyosin; contractIl 1.0 1 1 82.3 31.9 260 178-459 20-283 (284)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 79.3 30.0 105 181-291 2-106 (284)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 53.2 30.3 175 187-435 1908-2085(3245)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 44.2 20.2 57 353-409 93-149 (256)
6 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 41.6 18.4 14 178-191 303-316 (1080)
7 3na7_A HP0958; flagellar bioge 1.0 1 1 41.1 23.0 77 197-286 9-85 (256)
8 3oja_B Anopheles plasmodium-re 1.0 1 1 39.2 14.1 127 250-402 452-582 (597)
9 2v71_A Nuclear distribution pr 1.0 1 1 37.2 17.1 38 191-228 9-46 (189)
10 3vkg_A Dynein heavy chain, cyt 1.0 1 1 36.8 25.9 109 353-461 1990-2104(3245)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=106.41 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHH
Q ss_conf 427987588899
Q 001620 23 SKWLEQNLQDLE 34 (1043)
Q Consensus 23 s~wL~~~l~dmd 34 (1043)
..||..|..-+-
T Consensus 594 ~gfl~kN~d~l~ 605 (1184)
T 1i84_S 594 SAWLTKNMDPLN 605 (1184)
T ss_dssp TTHHHHHHCCCC
T ss_pred CCCHHHCCCCCC
T ss_conf 881342257321
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=82.29 Aligned_cols=260 Identities=13% Similarity=0.182 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999878659999999998999999999999999999865664212365300199999999999999999999
Q 001620 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257 (1043)
Q Consensus 178 ~EIerLqkeI~~LQtEKEal~sqyq~~leKl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARalmae~aLksceEtL~ 257 (1043)
..+..|...+..++.+...+...+......+..++..+..+...+..++.. +.........+...+..+...+.
T Consensus 20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 93 (284)
T 1c1g_A 20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEK------LELAEKKATDAEADVASLNRRIQ 93 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998898889999999999999999999999999999999------99999989877988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH----HHHHHH
Q ss_conf 9999999999999999999999999999999762056688788775542001001354303457553543----889999
Q 001620 258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLES 333 (1043)
Q Consensus 258 eLEeere~s~eEa~~l~eRI~eae~elesLk~ei~~LEaeke~~~~~~~ql~~iSeIpeLeeei~~l~ee----E~rIe~ 333 (1043)
.+.........+......++..+...+..+...+..+...... .-..+..+...+..+... ..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 164 (284)
T 1c1g_A 94 LFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQK---------DEEKMEIQEIQLKEAKHIAEDADRKYEE 164 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8898899889889999999999998888899999988877751---------0667999999999999988889988999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999998722787665478899989999996896998455339999999999999999999899988785520588999
Q 001620 334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS 413 (1043)
Q Consensus 334 Ld~kInEl~eeke~aslsV~ELaEkIdeLvnKVvsLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR~~L~e 413 (1043)
+...+..+. ..+..+...+..+...+..+...+......+..+...+..+...+..++..+..+......+..
T Consensus 165 ~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 237 (284)
T 1c1g_A 165 VARKLVIIE-------SDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237 (284)
T ss_dssp HTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998899888-------8899899989878879999999999999999999975877888999999999999988898998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999998879989997864999999999869989875002
Q 001620 414 KLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459 (1043)
Q Consensus 414 kLkElEeel~evq~l~esVe~e~~~L~s~ftEl~~~L~eLseeL~s 459 (1043)
.+..++..+..++.....+......+......+...++++...|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999998899999999999999999998899999999999997436
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=79.32 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999878659999999998999999999999999999865664212365300199999999999999999999999
Q 001620 181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME 260 (1043)
Q Consensus 181 erLqkeI~~LQtEKEal~sqyq~~leKl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARalmae~aLksceEtL~eLE 260 (1043)
+.|++.+..|+.+.+.+...+.....++..++..+..+...+..++.. +.........+...+..+...+..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKK------LKATEDELDKYSEALKDAQEKLELAE 75 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 378999999887688899999999999999998898889999999999------99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999762
Q 001620 261 EEQEKSAEEAKIERKRIKDARDKFESLKHEF 291 (1043)
Q Consensus 261 eere~s~eEa~~l~eRI~eae~elesLk~ei 291 (1043)
........++.....++..+...+..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (284)
T 1c1g_A 76 KKATDAEADVASLNRRIQLFEEELDRAQERL 106 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9898779889999999998898899889889
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=53.21 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9987865999999999899999999999999999986566421236530019999999999999999999999999999-
Q 001620 187 ILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEK- 265 (1043)
Q Consensus 187 I~~LQtEKEal~sqyq~~leKl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARalmae~aLksceEtL~eLEeere~- 265 (1043)
+..-..+.......|+.++.|+.+...++.+|+++...++-+ ++.. -+.+++.+.++..++..
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~------L~~k----------~~ea~~~l~~i~~~~~~a 1971 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRE------LDVK----------NEQANQKLKQMVQDQQAA 1971 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----------HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999988999999999999999999998999------9999----------999999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --999999999999999999999997620566887887755420010013543034575535438899999999999872
Q 001620 266 --SAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLE 343 (1043)
Q Consensus 266 --s~eEa~~l~eRI~eae~elesLk~ei~~LEaeke~~~~~~~ql~~iSeIpeLeeei~~l~eeE~rIe~Ld~kInEl~e 343 (1043)
....+....+.+.....++..++.++.. +++. ..|.
T Consensus 1972 e~~k~~v~~~~~~~~~~~~ei~~~k~~~e~---dL~~------------A~Pa--------------------------- 2009 (3245)
T 3vkg_A 1972 EIKQKDARELQVQLDVRNKEIAVQKVKAYA---DLEK------------AEPT--------------------------- 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------CCCC---------------------------
T ss_conf 999999999999999999999999999999---9864------------6999---------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 27876654788999899999968969984553399999999999999999998999887855205889999999999999
Q 001620 344 FGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL 423 (1043)
Q Consensus 344 eke~aslsV~ELaEkIdeLvnKVvsLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR~~L~ekLkElEeel~ 423 (1043)
.-+.++++.++.....+++.....+.++.++++++..|.++...+..+...|..++...+.++.
T Consensus 2010 ----------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2010 ----------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------8299999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 998879989997
Q 001620 424 RLHDLNRSVEDQ 435 (1043)
Q Consensus 424 evq~l~esVe~e 435 (1043)
+...++..+..+
T Consensus 2074 rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2074 RSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999862113
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=44.19 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 889998999999689699845533999999999999999999989998878552058
Q 001620 353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK 409 (1043)
Q Consensus 353 ~ELaEkIdeLvnKVvsLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR~ 409 (1043)
..|...|+.+..++..++..|....+.|+.++..++++...+..++.++..++...+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999999
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=41.58 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999878
Q 001620 178 KEIDKLQKQILTLQ 191 (1043)
Q Consensus 178 ~EIerLqkeI~~LQ 191 (1043)
.+-..+..++..|.
T Consensus 303 ~~f~~~~~A~~~lg 316 (1080)
T 2dfs_A 303 KEMVNTRQACTLLG 316 (1080)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999869
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=41.08 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999999999999999998656642123653001999999999999999999999999999999999999999
Q 001620 197 VKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKR 276 (1043)
Q Consensus 197 l~sqyq~~leKl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARalmae~aLksceEtL~eLEeere~s~eEa~~l~eR 276 (1043)
.+..++....++..++.++..+..++..++++ ...+...+......+..++.++.....+......+
T Consensus 9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~-------------~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r 75 (256)
T 3na7_A 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALND-------------KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK 75 (256)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998758999999999-------------99999999999999999999999999789999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 001620 277 IKDARDKFES 286 (1043)
Q Consensus 277 I~eae~eles 286 (1043)
|.+.+..+.+
T Consensus 76 i~~~~~~l~~ 85 (256)
T 3na7_A 76 IASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999872
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=39.17 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH--
Q ss_conf 999999999999999999999999999999999999999762056688788775542001001354303457553543--
Q 001620 250 KSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-- 327 (1043)
Q Consensus 250 ksceEtL~eLEeere~s~eEa~~l~eRI~eae~elesLk~ei~~LEaeke~~~~~~~ql~~iSeIpeLeeei~~l~ee-- 327 (1043)
..+++.+.+++.+.....++.......+...+.++.+..........+... ....+.++
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~ 512 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR-------------------SSDNLNKVFT 512 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC-------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------------HHHHHHHHHH
T ss_conf 999888988999999999999889999999999865555402766112478-------------------7888999999
Q ss_pred --HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --889999999999987227876654788999899999968969984553399999999999999999998999887
Q 001620 328 --REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKA 402 (1043)
Q Consensus 328 --E~rIe~Ld~kInEl~eeke~aslsV~ELaEkIdeLvnKVvsLE~~ISsqea~IerLr~EleELqeklkeLEeEl~ 402 (1043)
+.+.+.+..++.. ....+.+..+.++.+.+++..++..+..+..++.+++.++..+..+++.|++++-
T Consensus 513 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 513 HLKERQAFKLRETQA-------RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 988643236788888-------8776554201113677664889998731014789988889999999999998743
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=37.19 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86599999999989999999999999999998656642
Q 001620 191 QTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE 228 (1043)
Q Consensus 191 QtEKEal~sqyq~~leKl~eLE~qISeaQeeV~~LQdE 228 (1043)
+.+....+..|.....+|.+++....+.|...+.|+.+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999989999999
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=36.80 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899989999996896------9984553399999999999999999998999887855205889999999999999998
Q 001620 353 TEMAEKIDEVVSKVVN------LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH 426 (1043)
Q Consensus 353 ~ELaEkIdeLvnKVvs------LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR~~L~ekLkElEeel~evq 426 (1043)
++++..-++|....+. ++.++..+++..+..+.++.++++.++++++.++.|+.+-+.+..+-..++.+...++
T Consensus 1990 ~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998646999829999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87998999786499999999986998987500268
Q 001620 427 DLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK 461 (1043)
Q Consensus 427 ~l~esVe~e~~~L~s~ftEl~~~L~eLseeL~s~~ 461 (1043)
....+.+.-+..|..-..+=...+..|..++....
T Consensus 2070 ~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2070 NKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999998621131329999999999997252
Done!