Query 001620
Match_columns 1043
No_of_seqs 184 out of 212
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 17:54:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001620.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_915-919//hhsearch_scop/001620hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 26.5 11 0.00079 12.3 12.8 21 273-293 67-87 (185)
2 d1seta1 a.2.7.1 (A:1-110) Sery 12.4 21 0.0016 10.0 8.6 22 202-223 38-59 (110)
3 d1qvra2 c.37.1.20 (A:149-535) 10.9 25 0.0019 9.5 10.6 20 206-225 253-272 (387)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 7.5 42 0.0031 7.8 11.5 31 364-394 72-102 (107)
5 d1z0pa1 a.2.18.1 (A:1-77) Hypo 5.2 68 0.0049 6.3 6.6 62 24-97 13-74 (77)
6 d1gqea_ e.38.1.1 (A:) Polypept 4.4 83 0.0061 5.6 10.8 19 805-823 340-358 (362)
7 d1dk8a_ a.91.1.1 (A:) Axin RGS 4.1 89 0.0065 5.3 1.2 24 805-828 6-47 (147)
8 d1vf6a_ a.194.1.1 (A:) Associa 4.1 90 0.0065 5.3 3.0 24 829-852 32-55 (58)
9 d1htjf_ a.91.1.1 (F:) Pdz-RhoG 4.0 94 0.0068 5.2 0.7 8 820-827 32-39 (182)
10 d1x4ta1 a.2.15.1 (A:7-86) Pre- 3.8 98 0.0071 5.1 1.0 42 314-355 28-72 (80)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=26.45 E-value=11 Score=12.27 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999976205
Q 001620 273 ERKRIKDARDKFESLKHEFIG 293 (1043)
Q Consensus 273 l~eRI~eae~elesLk~ei~~ 293 (1043)
....+......+......+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~ 87 (185)
T d2ap3a1 67 RLKEFEKEEDAIKKSEQDFKK 87 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 888898889887899999999
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.36 E-value=21 Score=10.03 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999999999986
Q 001620 202 ENWLAKYWDIEEQIKELQQRVY 223 (1043)
Q Consensus 202 q~~leKl~eLE~qISeaQeeV~ 223 (1043)
+....++.+++.+.+.+.++|.
T Consensus 38 r~l~~~~e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 38 QELKKRLQEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999988
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=10.86 E-value=25 Score=9.46 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998656
Q 001620 206 AKYWDIEEQIKELQQRVYSL 225 (1043)
Q Consensus 206 eKl~eLE~qISeaQeeV~~L 225 (1043)
..+..+++++..++.+...|
T Consensus 253 ~el~~ler~I~qLe~E~~aL 272 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREAL 272 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999998
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.46 E-value=42 Score=7.82 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9689699845533999999999999999999
Q 001620 364 SKVVNLETSFSSQTALVQRLRTETDELQAQI 394 (1043)
Q Consensus 364 nKVvsLE~~ISsqea~IerLr~EleELqekl 394 (1043)
.++-.++..|...+.++..++.++++++..+
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 5
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=5.17 E-value=68 Score=6.27 Aligned_cols=62 Identities=27% Similarity=0.428 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 27987588899999999997521287178877774201048999999999999999998524458865212443
Q 001620 24 KWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTI 97 (1043)
Q Consensus 24 ~wL~~~l~dmd~kvk~~l~li~ed~dsfakraemyy~~RpeLi~~vee~~r~Yr~Laeryd~~t~el~~~~~~~ 97 (1043)
.|+..-++-.+--|+.--++.++|+|--|+-|-+-|..|. .+|+-|...+++-.. -|+.|-+
T Consensus 13 ~Wv~~Qi~in~mAm~~s~kv~eeD~derA~dA~iRYEskl----------DAY~Fl~gKF~Ny~~--gK~FHd~ 74 (77)
T d1z0pa1 13 DWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKL----------DAYEFLLGKFDNYKN--GKAFHDI 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--TCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC--CCCCCCC
T ss_conf 9999899999999999999998732178898999999760----------299999988861324--7763458
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=4.37 E-value=83 Score=5.59 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9258988630879998758
Q 001620 805 SETEEKFRMDIDELLEENL 823 (1043)
Q Consensus 805 S~~EeKfR~~ID~lLEENL 823 (1043)
+-++.=+-.+||.+++..|
T Consensus 340 ~~~~~vl~G~ld~~i~a~l 358 (362)
T d1gqea_ 340 RNTQAVLDGSLDQFIEASL 358 (362)
T ss_dssp SCHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHH
T ss_conf 7846875887799999998
No 7
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.12 E-value=89 Score=5.35 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHH------------------HHHHHHHHH
Q ss_conf 925898863087999------------------875889998
Q 001620 805 SETEEKFRMDIDELL------------------EENLDFWLR 828 (1043)
Q Consensus 805 S~~EeKfR~~ID~lL------------------EENL~Fwlr 828 (1043)
+|-+.|...+.+.|| +|||+||+-
T Consensus 6 ~~~~~~W~~sl~~iL~d~~~~~~F~~FL~~~~~~e~l~Fwl~ 47 (147)
T d1dk8a_ 6 TPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFA 47 (147)
T ss_dssp CCHHHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 960506998499998696899999999988077787799999
No 8
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=90 Score=5.34 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 533456788554549999999966
Q 001620 829 FSASFHQIQKFDTEVKDLKNDISK 852 (1043)
Q Consensus 829 FSts~hqiQkFqt~~~dLq~el~k 852 (1043)
=|--|+||=.+|++++.|+..+.-
T Consensus 32 qSPLF~qiL~lQ~SiqqLk~Qvn~ 55 (58)
T d1vf6a_ 32 KSPLFNQILTLQQSIKQLKGQLNH 55 (58)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 687899999999999999999977
No 9
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.97 E-value=94 Score=5.20 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 87588999
Q 001620 820 EENLDFWL 827 (1043)
Q Consensus 820 EENL~Fwl 827 (1043)
+|||.|||
T Consensus 32 ~enL~Fwl 39 (182)
T d1htjf_ 32 PSPLLFYL 39 (182)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 05787999
No 10
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.84 E-value=98 Score=5.06 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 54303457553543---8899999999999872278766547889
Q 001620 314 SDRSDIDVVRTAQD---REDLESLREKIKEQLEFGSSGSLTVTEM 355 (1043)
Q Consensus 314 IpeLeeei~~l~ee---E~rIe~Ld~kInEl~eeke~aslsV~EL 355 (1043)
+.++...+..|... |.+|++|...||.++-++..-+..|.+|
T Consensus 28 ikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~rI~eL 72 (80)
T d1x4ta1 28 IGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKEL 72 (80)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999850899877999998999999999999999999982
Done!