Query 001621
Match_columns 1043
No_of_seqs 504 out of 2903
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 3.9E-42 8.4E-47 386.9 54.4 594 24-794 3-624 (893)
2 KOG0319 WD40-repeat-containing 100.0 5E-39 1.1E-43 362.4 39.6 547 35-788 62-625 (775)
3 KOG0318 WD40 repeat stress pro 100.0 5.2E-35 1.1E-39 318.5 51.4 529 29-700 52-602 (603)
4 KOG0319 WD40-repeat-containing 100.0 9.7E-36 2.1E-40 335.9 43.2 551 41-787 25-582 (775)
5 KOG0271 Notchless-like WD40 re 100.0 2.6E-36 5.7E-41 316.8 30.6 362 75-698 114-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 9.5E-35 2.1E-39 305.2 28.0 371 21-631 96-479 (480)
7 KOG0306 WD40-repeat-containing 100.0 1.1E-30 2.3E-35 294.9 47.4 533 36-791 66-677 (888)
8 KOG0291 WD40-repeat-containing 100.0 3.8E-30 8.2E-35 290.5 51.2 528 29-708 49-620 (893)
9 KOG0318 WD40 repeat stress pro 100.0 1.2E-28 2.5E-33 269.1 52.6 500 36-701 19-561 (603)
10 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-31 1.1E-35 281.2 21.5 281 75-631 174-458 (459)
11 KOG0306 WD40-repeat-containing 100.0 4.7E-27 1E-31 265.6 51.0 592 46-825 33-669 (888)
12 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-30 7.5E-35 274.9 23.8 200 32-280 172-375 (459)
13 KOG1983 Tomosyn and related SN 100.0 1.2E-27 2.7E-32 298.5 39.1 859 12-1043 12-993 (993)
14 KOG0286 G-protein beta subunit 100.0 2.5E-27 5.5E-32 242.3 30.1 288 75-631 54-343 (343)
15 KOG0296 Angio-associated migra 100.0 3.3E-26 7.1E-31 240.7 34.9 343 25-633 54-398 (399)
16 KOG2106 Uncharacterized conser 100.0 1.8E-24 3.9E-29 235.0 46.5 497 32-823 101-618 (626)
17 KOG1539 WD repeat protein [Gen 100.0 2.3E-25 4.9E-30 255.0 40.4 487 44-699 121-647 (910)
18 KOG0315 G-protein beta subunit 100.0 4.8E-26 1E-30 228.0 29.2 184 48-281 11-198 (311)
19 KOG0315 G-protein beta subunit 100.0 1.1E-25 2.4E-30 225.4 31.1 280 89-640 11-295 (311)
20 KOG0286 G-protein beta subunit 100.0 1.3E-25 2.8E-30 229.9 31.8 210 21-281 42-260 (343)
21 KOG0279 G protein beta subunit 100.0 1.1E-25 2.5E-30 229.2 29.8 299 110-700 7-313 (315)
22 KOG0276 Vesicle coat complex C 99.9 4.9E-25 1.1E-29 244.5 37.0 206 34-286 12-221 (794)
23 KOG0273 Beta-transducin family 99.9 1.8E-25 3.9E-30 241.6 32.1 331 33-633 176-523 (524)
24 KOG1408 WD40 repeat protein [F 99.9 2.4E-24 5.2E-29 241.2 42.1 588 22-820 61-712 (1080)
25 KOG0273 Beta-transducin family 99.9 1.7E-25 3.6E-30 241.9 31.5 323 73-699 175-522 (524)
26 KOG0292 Vesicle coat complex C 99.9 1.6E-24 3.4E-29 248.2 39.7 159 76-283 9-168 (1202)
27 KOG2048 WD40 repeat protein [G 99.9 4.6E-23 9.9E-28 232.2 49.5 519 34-703 24-551 (691)
28 KOG0295 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 235.4 26.4 299 74-632 106-405 (406)
29 KOG0296 Angio-associated migra 99.9 3.5E-24 7.6E-29 225.5 33.5 161 74-283 62-223 (399)
30 PLN00181 protein SPA1-RELATED; 99.9 4.6E-24 1E-28 269.9 40.3 317 56-632 457-792 (793)
31 KOG1539 WD repeat protein [Gen 99.9 3.2E-22 6.9E-27 229.4 50.5 559 33-833 74-649 (910)
32 KOG0284 Polyadenylation factor 99.9 5.3E-26 1.2E-30 241.8 18.4 284 76-634 96-381 (464)
33 KOG0285 Pleiotropic regulator 99.9 1.6E-24 3.4E-29 226.7 26.2 202 32-283 148-351 (460)
34 PLN00181 protein SPA1-RELATED; 99.9 3.3E-23 7.1E-28 262.1 40.2 199 33-281 481-691 (793)
35 KOG0263 Transcription initiati 99.9 1.3E-24 2.8E-29 249.3 24.3 239 35-349 378-649 (707)
36 KOG0279 G protein beta subunit 99.9 1.8E-23 3.8E-28 213.3 26.5 247 32-348 60-312 (315)
37 cd00200 WD40 WD40 domain, foun 99.9 1.7E-22 3.7E-27 220.7 36.6 282 74-631 7-289 (289)
38 cd00200 WD40 WD40 domain, foun 99.9 1.5E-22 3.3E-27 221.1 35.0 200 33-281 7-208 (289)
39 KOG0266 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 241.3 33.0 202 35-283 159-367 (456)
40 KOG0645 WD40 repeat protein [G 99.9 4.2E-22 9.1E-27 202.5 33.1 206 28-279 7-224 (312)
41 KOG0293 WD40 repeat-containing 99.9 9.8E-23 2.1E-27 216.8 24.6 200 32-281 221-426 (519)
42 KOG0278 Serine/threonine kinas 99.9 2.5E-23 5.4E-28 208.4 18.8 202 30-281 9-214 (334)
43 KOG0645 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 199.4 30.7 295 112-700 8-311 (312)
44 KOG0263 Transcription initiati 99.9 1.6E-23 3.4E-28 240.5 19.1 204 30-282 446-651 (707)
45 KOG0266 WD40 repeat-containing 99.9 7.5E-22 1.6E-26 232.9 33.6 288 75-633 158-454 (456)
46 PF08596 Lgl_C: Lethal giant l 99.9 5.2E-23 1.1E-27 234.4 22.5 291 538-851 3-359 (395)
47 KOG0284 Polyadenylation factor 99.9 4.5E-23 9.7E-28 219.6 19.3 229 36-336 97-328 (464)
48 KOG0265 U5 snRNP-specific prot 99.9 8.4E-22 1.8E-26 202.9 27.9 203 28-280 40-246 (338)
49 KOG1063 RNA polymerase II elon 99.9 4.4E-20 9.4E-25 208.3 43.2 543 27-699 46-698 (764)
50 KOG0276 Vesicle coat complex C 99.9 1.2E-20 2.6E-25 210.0 38.0 201 37-284 57-261 (794)
51 KOG0295 WD40 repeat-containing 99.9 2.2E-22 4.9E-27 211.8 21.4 166 32-216 105-273 (406)
52 KOG0285 Pleiotropic regulator 99.9 1.7E-21 3.6E-26 204.2 26.2 159 75-282 150-309 (460)
53 KOG0281 Beta-TrCP (transducin 99.9 6.8E-23 1.5E-27 213.3 15.7 194 35-284 197-392 (499)
54 KOG0292 Vesicle coat complex C 99.9 2.1E-19 4.6E-24 206.5 44.7 266 35-352 9-283 (1202)
55 KOG0275 Conserved WD40 repeat- 99.9 2.8E-23 6E-28 214.1 11.7 268 487-818 217-506 (508)
56 KOG0265 U5 snRNP-specific prot 99.9 8.1E-21 1.7E-25 195.7 28.5 283 117-696 47-334 (338)
57 KOG0282 mRNA splicing factor [ 99.9 4.2E-22 9.2E-27 216.7 17.6 201 31-279 210-414 (503)
58 KOG0282 mRNA splicing factor [ 99.9 2.5E-21 5.4E-26 210.8 19.7 294 109-698 205-503 (503)
59 KOG0640 mRNA cleavage stimulat 99.9 5.5E-21 1.2E-25 196.8 20.5 215 28-286 105-341 (430)
60 KOG0643 Translation initiation 99.9 7.1E-20 1.5E-24 185.7 26.7 215 29-286 4-226 (327)
61 KOG0305 Anaphase promoting com 99.9 3.8E-20 8.2E-25 210.2 27.5 147 81-279 182-330 (484)
62 KOG1408 WD40 repeat protein [F 99.9 8.2E-19 1.8E-23 197.3 36.6 537 91-789 51-633 (1080)
63 KOG0313 Microtubule binding pr 99.9 6.4E-20 1.4E-24 194.3 26.0 146 495-700 271-418 (423)
64 KOG1063 RNA polymerase II elon 99.9 8.5E-18 1.8E-22 190.0 42.5 563 33-790 12-658 (764)
65 KOG0643 Translation initiation 99.9 3.1E-19 6.8E-24 181.1 27.8 159 74-282 8-179 (327)
66 KOG0316 Conserved WD40 repeat- 99.9 5.3E-20 1.2E-24 183.3 21.3 153 493-708 111-265 (307)
67 KOG0275 Conserved WD40 repeat- 99.9 5.3E-21 1.2E-25 197.3 14.3 166 73-286 210-384 (508)
68 KOG0313 Microtubule binding pr 99.8 2.1E-19 4.6E-24 190.4 24.3 211 34-282 104-332 (423)
69 KOG0310 Conserved WD40 repeat- 99.8 2.8E-19 6E-24 195.4 25.7 287 175-702 25-311 (487)
70 KOG2048 WD40 repeat protein [G 99.8 8.5E-17 1.8E-21 182.0 45.5 459 76-828 25-504 (691)
71 KOG0288 WD40 repeat protein Ti 99.8 2.8E-20 6.1E-25 198.8 16.2 284 117-697 175-458 (459)
72 KOG0772 Uncharacterized conser 99.8 4.4E-19 9.6E-24 193.8 25.6 310 118-701 168-488 (641)
73 KOG0310 Conserved WD40 repeat- 99.8 8.5E-19 1.8E-23 191.6 27.0 161 75-282 25-186 (487)
74 KOG0772 Uncharacterized conser 99.8 4.8E-19 1E-23 193.6 24.5 176 32-279 164-346 (641)
75 KOG0268 Sof1-like rRNA process 99.8 3.4E-20 7.3E-25 195.1 15.0 198 29-280 60-259 (433)
76 KOG0299 U3 snoRNP-associated p 99.8 2.1E-18 4.5E-23 187.2 28.0 203 28-282 135-358 (479)
77 KOG2106 Uncharacterized conser 99.8 2.4E-16 5.1E-21 172.3 43.2 408 28-701 56-478 (626)
78 KOG0646 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 191.0 23.0 139 497-659 190-330 (476)
79 KOG0281 Beta-TrCP (transducin 99.8 1.3E-19 2.9E-24 188.9 14.8 198 30-286 232-434 (499)
80 KOG0973 Histone transcription 99.8 2.6E-18 5.7E-23 204.1 27.1 327 73-568 10-357 (942)
81 KOG0274 Cdc4 and related F-box 99.8 7.6E-18 1.7E-22 198.6 30.7 193 34-282 207-402 (537)
82 PTZ00421 coronin; Provisional 99.8 5.2E-18 1.1E-22 199.8 29.0 207 31-285 71-295 (493)
83 KOG0274 Cdc4 and related F-box 99.8 4.6E-18 9.9E-23 200.5 28.0 280 76-641 208-490 (537)
84 PTZ00421 coronin; Provisional 99.8 9.2E-18 2E-22 197.7 30.4 283 490-830 27-331 (493)
85 KOG1407 WD40 repeat protein [F 99.8 1.4E-17 3.1E-22 168.7 27.3 273 118-625 21-294 (313)
86 KOG0640 mRNA cleavage stimulat 99.8 8.2E-19 1.8E-23 180.9 17.7 230 490-779 179-423 (430)
87 KOG0278 Serine/threonine kinas 99.8 2E-19 4.4E-24 180.5 12.8 229 478-781 58-296 (334)
88 KOG0289 mRNA splicing factor [ 99.8 1.1E-17 2.3E-22 180.0 26.8 195 491-782 311-506 (506)
89 KOG0289 mRNA splicing factor [ 99.8 1.6E-17 3.4E-22 178.7 27.6 158 77-281 220-378 (506)
90 KOG0283 WD40 repeat-containing 99.8 5.6E-18 1.2E-22 196.9 25.0 250 33-349 265-576 (712)
91 KOG1036 Mitotic spindle checkp 99.8 3.9E-17 8.4E-22 169.7 28.0 158 72-283 9-166 (323)
92 KOG0316 Conserved WD40 repeat- 99.8 4.9E-17 1.1E-21 162.3 27.5 206 31-287 13-220 (307)
93 KOG0293 WD40 repeat-containing 99.8 1.7E-18 3.8E-23 184.7 18.4 242 32-347 266-511 (519)
94 PTZ00420 coronin; Provisional 99.8 3.5E-17 7.5E-22 193.7 30.5 207 30-283 69-296 (568)
95 KOG0277 Peroxisomal targeting 99.8 9.3E-18 2E-22 169.4 20.8 245 177-632 61-308 (311)
96 KOG0283 WD40 repeat-containing 99.8 4.1E-18 8.9E-23 198.0 21.0 214 31-283 365-579 (712)
97 KOG0641 WD40 repeat protein [G 99.8 9.5E-16 2.1E-20 151.8 31.2 311 249-699 32-348 (350)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.1E-15 2.4E-20 170.4 35.6 185 47-282 1-189 (300)
99 KOG1036 Mitotic spindle checkp 99.8 2.6E-16 5.6E-21 163.6 27.5 194 35-279 13-206 (323)
100 KOG0305 Anaphase promoting com 99.8 4.5E-17 9.8E-22 185.2 24.0 236 35-348 217-460 (484)
101 KOG1446 Histone H3 (Lys4) meth 99.8 1.3E-15 2.8E-20 159.4 32.7 155 490-701 147-304 (311)
102 PTZ00420 coronin; Provisional 99.8 6.4E-16 1.4E-20 183.0 34.0 254 53-381 50-319 (568)
103 KOG0294 WD40 repeat-containing 99.8 1E-16 2.3E-21 166.5 23.7 241 32-352 40-284 (362)
104 KOG0647 mRNA export protein (c 99.8 1.3E-16 2.7E-21 165.1 23.9 237 490-791 34-290 (347)
105 KOG0973 Histone transcription 99.8 8.1E-17 1.8E-21 191.6 24.9 291 490-819 20-353 (942)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.7E-15 3.7E-20 168.8 34.5 140 89-279 2-144 (300)
107 KOG2096 WD40 repeat protein [G 99.8 3.6E-16 7.9E-21 162.2 26.4 166 75-279 85-257 (420)
108 KOG0300 WD40 repeat-containing 99.8 1.8E-16 4E-21 163.8 24.1 325 74-701 146-477 (481)
109 KOG0308 Conserved WD40 repeat- 99.8 2.6E-17 5.6E-22 184.9 19.1 151 490-701 178-328 (735)
110 KOG1407 WD40 repeat protein [F 99.7 1.4E-16 3E-21 161.6 21.8 234 30-336 59-293 (313)
111 KOG0268 Sof1-like rRNA process 99.7 2.4E-17 5.3E-22 173.7 16.8 153 75-282 65-220 (433)
112 KOG2055 WD40 repeat protein [G 99.7 2E-16 4.4E-21 171.6 24.0 161 73-281 210-375 (514)
113 KOG0288 WD40 repeat protein Ti 99.7 5E-17 1.1E-21 174.1 17.4 209 30-286 214-423 (459)
114 KOG0299 U3 snoRNP-associated p 99.7 3.2E-16 6.9E-21 170.4 22.8 213 32-283 199-413 (479)
115 KOG0647 mRNA export protein (c 99.7 1.1E-15 2.3E-20 158.2 25.1 286 174-621 25-311 (347)
116 KOG4283 Transcription-coupled 99.7 2.2E-16 4.8E-21 162.2 19.2 222 30-285 38-281 (397)
117 KOG1446 Histone H3 (Lys4) meth 99.7 6.9E-15 1.5E-19 153.9 30.0 223 34-285 13-267 (311)
118 KOG0308 Conserved WD40 repeat- 99.7 6E-16 1.3E-20 174.0 23.2 208 40-286 29-249 (735)
119 KOG1445 Tumor-specific antigen 99.7 1.3E-14 2.8E-19 161.9 32.6 119 28-146 72-199 (1012)
120 KOG1332 Vesicle coat complex C 99.7 1.9E-15 4E-20 152.1 22.2 268 175-632 10-285 (299)
121 KOG2445 Nuclear pore complex c 99.7 4.1E-15 8.8E-20 154.3 25.2 295 118-568 14-320 (361)
122 KOG0646 WD40 repeat protein [G 99.7 7E-16 1.5E-20 168.1 20.5 219 31-287 77-314 (476)
123 KOG1963 WD40 repeat protein [G 99.7 3.1E-13 6.8E-18 158.1 43.4 498 31-702 12-540 (792)
124 KOG0301 Phospholipase A2-activ 99.7 3.5E-15 7.5E-20 169.3 26.4 137 497-701 153-289 (745)
125 KOG0641 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 142.8 27.2 250 33-348 87-348 (350)
126 KOG1963 WD40 repeat protein [G 99.7 1.9E-13 4.2E-18 159.8 38.6 206 30-283 52-325 (792)
127 KOG2055 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 160.9 23.6 290 36-405 214-511 (514)
128 KOG0300 WD40 repeat-containing 99.7 4.8E-15 1E-19 153.4 22.2 193 32-280 145-344 (481)
129 KOG0269 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 174.2 19.9 297 116-634 38-341 (839)
130 KOG1274 WD40 repeat protein [G 99.7 2.3E-14 5E-19 167.4 29.8 256 26-349 4-262 (933)
131 KOG1332 Vesicle coat complex C 99.7 1.7E-15 3.6E-20 152.5 17.6 250 32-347 8-284 (299)
132 KOG0294 WD40 repeat-containing 99.7 5.6E-15 1.2E-19 153.8 20.8 199 33-282 81-283 (362)
133 KOG0264 Nucleosome remodeling 99.7 5.7E-15 1.2E-19 161.0 21.6 265 25-348 114-403 (422)
134 KOG0277 Peroxisomal targeting 99.7 7.1E-15 1.5E-19 148.8 20.2 211 26-284 51-269 (311)
135 KOG1274 WD40 repeat protein [G 99.7 4.2E-14 9.2E-19 165.2 29.2 159 74-283 11-171 (933)
136 KOG0301 Phospholipase A2-activ 99.6 1.5E-14 3.3E-19 164.1 23.8 270 32-404 11-286 (745)
137 KOG2096 WD40 repeat protein [G 99.6 5.6E-14 1.2E-18 146.1 25.1 252 29-335 80-393 (420)
138 KOG0639 Transducin-like enhanc 99.6 5.3E-15 1.1E-19 161.4 18.3 145 491-699 559-703 (705)
139 KOG0270 WD40 repeat-containing 99.6 1.5E-14 3.2E-19 156.9 20.3 244 34-348 172-448 (463)
140 KOG1273 WD40 repeat protein [G 99.6 4.6E-14 1E-18 146.6 23.0 202 34-281 23-227 (405)
141 KOG0264 Nucleosome remodeling 99.6 1.1E-14 2.3E-19 158.9 17.2 216 33-281 175-405 (422)
142 KOG0321 WD40 repeat-containing 99.6 9.4E-14 2E-18 156.3 25.0 228 32-281 46-302 (720)
143 KOG0267 Microtubule severing p 99.6 2.4E-15 5.1E-20 171.0 9.2 195 30-273 65-261 (825)
144 KOG1538 Uncharacterized conser 99.6 7E-13 1.5E-17 148.9 28.3 172 78-317 14-186 (1081)
145 KOG0267 Microtubule severing p 99.6 2.8E-15 6.1E-20 170.5 9.2 204 34-286 27-232 (825)
146 KOG1273 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 146.4 17.5 210 539-820 26-268 (405)
147 COG2319 FOG: WD40 repeat [Gene 99.6 9.6E-11 2.1E-15 134.9 46.9 202 30-281 60-272 (466)
148 KOG0650 WD40 repeat nucleolar 99.6 2E-13 4.2E-18 152.5 22.5 324 32-630 397-732 (733)
149 KOG2445 Nuclear pore complex c 99.6 1.7E-12 3.6E-17 135.1 26.4 275 30-348 8-317 (361)
150 COG2319 FOG: WD40 repeat [Gene 99.5 3E-10 6.6E-15 130.7 46.6 337 74-708 63-408 (466)
151 KOG0322 G-protein beta subunit 99.5 1.8E-13 3.9E-18 139.3 16.7 297 173-632 11-322 (323)
152 KOG0269 WD40 repeat-containing 99.5 6.6E-14 1.4E-18 160.7 15.3 216 21-283 69-299 (839)
153 KOG0302 Ribosome Assembly prot 99.5 3.8E-13 8.3E-18 143.1 19.7 205 76-349 151-378 (440)
154 KOG0639 Transducin-like enhanc 99.5 4.3E-14 9.3E-19 154.4 12.6 191 38-279 512-703 (705)
155 KOG0322 G-protein beta subunit 99.5 2.5E-13 5.5E-18 138.3 16.4 73 74-148 12-86 (323)
156 KOG1034 Transcriptional repres 99.5 1.6E-12 3.4E-17 136.4 22.7 164 75-283 37-214 (385)
157 KOG4283 Transcription-coupled 99.5 1.1E-11 2.5E-16 127.9 26.4 317 117-632 43-364 (397)
158 KOG4328 WD40 protein [Function 99.5 6.6E-12 1.4E-16 136.9 25.8 160 495-702 335-497 (498)
159 KOG4328 WD40 protein [Function 99.5 3.9E-13 8.5E-18 146.4 15.8 214 24-280 174-399 (498)
160 KOG1240 Protein kinase contain 99.5 6.4E-12 1.4E-16 150.7 27.1 183 62-283 1034-1228(1431)
161 KOG0302 Ribosome Assembly prot 99.5 6.5E-13 1.4E-17 141.4 16.7 165 31-210 207-380 (440)
162 KOG0650 WD40 repeat nucleolar 99.5 6.9E-12 1.5E-16 140.4 25.0 149 491-697 574-732 (733)
163 KOG0307 Vesicle coat complex C 99.5 3.3E-13 7.1E-18 161.8 15.3 269 110-569 57-330 (1049)
164 KOG1517 Guanine nucleotide bin 99.5 8.8E-12 1.9E-16 147.2 26.2 165 78-280 1066-1239(1387)
165 KOG1517 Guanine nucleotide bin 99.5 1.3E-11 2.8E-16 145.8 27.5 155 493-703 1219-1384(1387)
166 KOG0321 WD40 repeat-containing 99.5 7.1E-12 1.5E-16 141.5 24.2 114 129-282 64-177 (720)
167 KOG4378 Nuclear protein COP1 [ 99.5 4.2E-12 9E-17 139.0 21.3 90 490-615 215-305 (673)
168 KOG4227 WD40 repeat protein [G 99.5 6.9E-12 1.5E-16 133.4 21.4 214 32-284 53-278 (609)
169 KOG1188 WD40 repeat protein [G 99.5 6.4E-12 1.4E-16 132.7 20.9 195 48-284 41-246 (376)
170 KOG0270 WD40 repeat-containing 99.4 1.9E-12 4.2E-17 140.7 16.4 242 494-789 191-456 (463)
171 KOG0307 Vesicle coat complex C 99.4 9E-13 2E-17 158.1 14.5 223 35-317 64-306 (1049)
172 KOG1009 Chromatin assembly com 99.4 9.9E-12 2.1E-16 133.9 20.0 151 491-660 21-177 (434)
173 KOG0771 Prolactin regulatory e 99.4 3.3E-12 7.2E-17 138.7 15.5 199 39-281 148-355 (398)
174 KOG1009 Chromatin assembly com 99.4 1.1E-10 2.3E-15 126.0 25.4 173 75-281 12-196 (434)
175 KOG4378 Nuclear protein COP1 [ 99.4 4.6E-12 1E-16 138.7 14.8 198 38-283 82-283 (673)
176 KOG2919 Guanine nucleotide-bin 99.4 6.7E-11 1.5E-15 123.9 22.4 247 39-349 53-327 (406)
177 KOG1188 WD40 repeat protein [G 99.4 2E-11 4.4E-16 128.9 18.7 237 494-788 83-352 (376)
178 KOG1587 Cytoplasmic dynein int 99.4 1.2E-10 2.6E-15 136.9 26.4 104 497-634 413-517 (555)
179 KOG1445 Tumor-specific antigen 99.3 2.4E-11 5.2E-16 136.2 18.0 160 84-284 587-754 (1012)
180 KOG0771 Prolactin regulatory e 99.3 1.4E-11 3E-16 133.9 15.4 156 490-660 151-336 (398)
181 KOG2919 Guanine nucleotide-bin 99.3 4.1E-10 9E-15 118.1 25.5 192 490-734 165-368 (406)
182 KOG0642 Cell-cycle nuclear pro 99.3 1.6E-11 3.5E-16 137.3 16.0 128 484-636 296-429 (577)
183 KOG1034 Transcriptional repres 99.3 6.9E-11 1.5E-15 124.2 19.4 241 534-825 87-377 (385)
184 PRK11028 6-phosphogluconolacto 99.3 1.7E-09 3.7E-14 123.2 31.8 211 32-282 31-260 (330)
185 KOG0642 Cell-cycle nuclear pro 99.3 2.9E-11 6.2E-16 135.3 16.4 230 24-286 284-567 (577)
186 KOG1538 Uncharacterized conser 99.3 1.3E-09 2.8E-14 123.2 29.0 199 31-279 49-251 (1081)
187 KOG0649 WD40 repeat protein [G 99.3 7.1E-10 1.5E-14 112.1 23.5 169 79-287 13-193 (325)
188 KOG0303 Actin-binding protein 99.3 1.6E-10 3.4E-15 124.1 18.5 210 24-282 70-296 (472)
189 KOG0303 Actin-binding protein 99.3 1.3E-10 2.8E-15 124.7 17.7 203 532-784 77-296 (472)
190 PRK11028 6-phosphogluconolacto 99.3 8.7E-10 1.9E-14 125.6 25.9 208 34-280 78-304 (330)
191 KOG1587 Cytoplasmic dynein int 99.3 5.3E-10 1.1E-14 131.6 23.5 209 32-282 239-474 (555)
192 KOG1240 Protein kinase contain 99.2 2.2E-09 4.7E-14 129.5 27.4 211 31-286 1044-1279(1431)
193 KOG2110 Uncharacterized conser 99.2 7.7E-10 1.7E-14 118.4 20.7 151 495-702 97-250 (391)
194 PRK01742 tolB translocation pr 99.2 7.1E-10 1.5E-14 130.7 22.7 194 33-280 201-401 (429)
195 PF04762 IKI3: IKI3 family; I 99.2 5.4E-06 1.2E-10 105.2 57.3 234 37-317 23-314 (928)
196 KOG0290 Conserved WD40 repeat- 99.2 1.9E-09 4.1E-14 111.7 21.2 234 28-317 89-345 (364)
197 KOG4497 Uncharacterized conser 99.2 1.2E-09 2.7E-14 114.6 18.9 139 40-199 13-154 (447)
198 KOG0649 WD40 repeat protein [G 99.2 5.6E-09 1.2E-13 105.7 22.4 242 490-782 17-274 (325)
199 KOG1524 WD40 repeat-containing 99.2 1.3E-09 2.8E-14 120.8 19.0 93 490-632 193-285 (737)
200 KOG0644 Uncharacterized conser 99.2 7.2E-11 1.6E-15 136.5 9.0 218 32-284 187-472 (1113)
201 KOG2139 WD40 repeat protein [G 99.1 5.7E-09 1.2E-13 111.2 22.3 208 35-273 140-368 (445)
202 KOG1007 WD repeat protein TSSC 99.1 1.9E-09 4.2E-14 111.5 18.3 225 36-279 124-360 (370)
203 KOG2394 WD40 protein DMR-N9 [G 99.1 7.7E-10 1.7E-14 123.0 16.3 154 44-216 182-370 (636)
204 KOG1523 Actin-related protein 99.1 5.3E-09 1.1E-13 110.1 21.6 222 34-283 9-239 (361)
205 KOG1310 WD40 repeat protein [G 99.1 5.5E-10 1.2E-14 124.0 15.0 236 31-286 46-309 (758)
206 KOG2321 WD40 repeat protein [G 99.1 9.1E-09 2E-13 115.4 24.5 279 29-381 45-326 (703)
207 KOG0644 Uncharacterized conser 99.1 2.9E-10 6.2E-15 131.7 12.5 156 75-279 189-345 (1113)
208 KOG2111 Uncharacterized conser 99.1 1.3E-08 2.8E-13 107.2 23.3 178 58-283 76-259 (346)
209 KOG4227 WD40 repeat protein [G 99.1 1E-08 2.2E-13 109.6 22.3 165 74-283 54-228 (609)
210 KOG2111 Uncharacterized conser 99.1 1.6E-07 3.5E-12 99.1 30.1 124 493-627 191-316 (346)
211 KOG1007 WD repeat protein TSSC 99.1 9.2E-09 2E-13 106.6 19.8 202 33-283 61-292 (370)
212 KOG1912 WD40 repeat protein [G 99.1 1.7E-08 3.7E-13 116.5 23.4 216 34-281 54-305 (1062)
213 PRK03629 tolB translocation pr 99.0 3.1E-08 6.7E-13 116.7 25.5 196 35-280 198-406 (429)
214 KOG0290 Conserved WD40 repeat- 99.0 5.2E-08 1.1E-12 101.3 22.9 157 493-658 161-345 (364)
215 PRK01742 tolB translocation pr 99.0 8E-09 1.7E-13 121.8 18.6 177 56-284 183-365 (429)
216 PF02239 Cytochrom_D1: Cytochr 99.0 7E-07 1.5E-11 102.4 33.6 194 47-283 5-205 (369)
217 KOG2110 Uncharacterized conser 99.0 8.9E-08 1.9E-12 102.9 24.2 188 46-283 55-251 (391)
218 PRK04922 tolB translocation pr 99.0 5.7E-08 1.2E-12 114.8 23.9 197 35-281 203-412 (433)
219 PRK05137 tolB translocation pr 99.0 8.7E-08 1.9E-12 113.4 25.1 200 33-282 199-414 (435)
220 KOG1310 WD40 repeat protein [G 98.9 6.6E-09 1.4E-13 115.6 13.5 245 478-788 46-309 (758)
221 KOG1912 WD40 repeat protein [G 98.9 4.5E-07 9.7E-12 105.1 28.5 123 77-218 16-153 (1062)
222 PRK05137 tolB translocation pr 98.9 3.6E-07 7.8E-12 108.1 28.9 176 58-282 183-368 (435)
223 PF08662 eIF2A: Eukaryotic tra 98.9 3.2E-08 6.9E-13 103.2 16.3 111 35-148 59-180 (194)
224 KOG1272 WD40-repeat-containing 98.9 2.3E-09 4.9E-14 117.5 7.4 196 37-283 131-326 (545)
225 PF02239 Cytochrom_D1: Cytochr 98.9 5.3E-06 1.2E-10 95.2 35.4 106 91-216 9-116 (369)
226 KOG2321 WD40 repeat protein [G 98.9 3.7E-08 8E-13 110.7 16.9 198 35-281 133-344 (703)
227 PRK02889 tolB translocation pr 98.9 1.4E-07 3E-12 111.2 23.0 189 33-272 193-392 (427)
228 PRK03629 tolB translocation pr 98.9 6.1E-07 1.3E-11 105.7 28.3 177 58-283 180-366 (429)
229 PF08662 eIF2A: Eukaryotic tra 98.9 1.3E-07 2.7E-12 98.7 19.6 149 81-284 10-182 (194)
230 KOG2139 WD40 repeat protein [G 98.9 9.7E-08 2.1E-12 102.0 18.0 186 36-270 99-300 (445)
231 KOG1524 WD40 repeat-containing 98.9 2.9E-08 6.4E-13 110.3 14.5 181 33-277 102-283 (737)
232 PRK02889 tolB translocation pr 98.8 3.1E-07 6.8E-12 108.2 24.0 178 57-283 176-363 (427)
233 KOG2394 WD40 protein DMR-N9 [G 98.8 1.6E-08 3.6E-13 112.7 11.6 102 25-127 281-384 (636)
234 KOG3881 Uncharacterized conser 98.8 3.7E-07 8E-12 98.9 21.3 126 495-658 216-341 (412)
235 KOG1272 WD40-repeat-containing 98.8 5.9E-09 1.3E-13 114.3 5.9 160 33-213 168-328 (545)
236 KOG1334 WD40 repeat protein [G 98.8 1.3E-07 2.7E-12 104.7 16.1 205 495-781 245-465 (559)
237 PF04762 IKI3: IKI3 family; I 98.8 0.00032 7E-09 89.3 49.0 197 35-282 75-335 (928)
238 TIGR02800 propeller_TolB tol-p 98.8 7E-07 1.5E-11 105.2 23.0 188 35-272 189-386 (417)
239 KOG2041 WD40 repeat protein [G 98.8 1.8E-05 4E-10 91.1 32.5 133 116-280 13-145 (1189)
240 KOG1523 Actin-related protein 98.8 2.4E-07 5.2E-12 97.8 16.3 215 490-781 17-235 (361)
241 KOG1334 WD40 repeat protein [G 98.7 2.9E-07 6.3E-12 101.9 16.6 214 32-278 139-364 (559)
242 KOG3881 Uncharacterized conser 98.7 5.2E-07 1.1E-11 97.7 17.9 190 48-285 116-325 (412)
243 PRK04922 tolB translocation pr 98.7 9.1E-07 2E-11 104.6 21.5 179 57-284 184-372 (433)
244 TIGR02800 propeller_TolB tol-p 98.7 2.3E-06 4.9E-11 100.9 23.8 177 58-283 171-357 (417)
245 PRK01029 tolB translocation pr 98.7 2.9E-06 6.3E-11 99.7 24.3 197 38-283 187-406 (428)
246 KOG3914 WD repeat protein WDR4 98.7 2E-07 4.4E-12 101.5 13.0 161 38-217 65-232 (390)
247 PRK04792 tolB translocation pr 98.7 2.7E-06 5.8E-11 100.8 23.6 159 36-212 218-386 (448)
248 KOG2315 Predicted translation 98.7 1.7E-05 3.7E-10 89.9 28.3 152 38-210 37-204 (566)
249 PRK00178 tolB translocation pr 98.6 4.1E-06 8.9E-11 99.1 24.6 160 35-212 198-367 (430)
250 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.2E-05 2.6E-10 90.5 26.3 205 43-286 53-336 (352)
251 PF10282 Lactonase: Lactonase, 98.6 3.6E-05 7.9E-10 88.1 29.9 209 35-280 86-322 (345)
252 KOG4547 WD40 repeat-containing 98.6 9.7E-06 2.1E-10 92.6 23.9 167 87-317 4-194 (541)
253 KOG4497 Uncharacterized conser 98.6 3.2E-07 6.9E-12 96.9 10.7 188 36-279 49-239 (447)
254 PRK00178 tolB translocation pr 98.6 8.5E-06 1.8E-10 96.4 24.1 177 58-283 180-366 (430)
255 COG5354 Uncharacterized protei 98.6 6.9E-05 1.5E-09 84.1 29.0 162 34-214 31-216 (561)
256 PF10282 Lactonase: Lactonase, 98.5 0.00026 5.6E-09 81.1 35.0 210 34-280 35-275 (345)
257 KOG0974 WD-repeat protein WDR6 98.5 2.1E-06 4.5E-11 103.4 17.9 196 37-282 89-290 (967)
258 KOG1064 RAVE (regulator of V-A 98.5 4.1E-07 9E-12 113.7 11.6 181 482-709 2208-2407(2439)
259 KOG1409 Uncharacterized conser 98.5 2.7E-06 5.9E-11 90.8 16.0 205 30-282 63-272 (404)
260 KOG2315 Predicted translation 98.5 0.00032 6.8E-09 80.0 33.1 116 498-659 287-411 (566)
261 PRK04792 tolB translocation pr 98.5 1E-05 2.2E-10 95.8 22.9 177 58-283 199-385 (448)
262 KOG4547 WD40 repeat-containing 98.5 7.8E-06 1.7E-10 93.3 20.4 187 44-281 2-221 (541)
263 KOG2314 Translation initiation 98.5 7.9E-05 1.7E-09 84.2 26.7 105 38-145 213-332 (698)
264 PF15492 Nbas_N: Neuroblastoma 98.4 3.1E-05 6.8E-10 81.7 21.0 101 38-138 46-168 (282)
265 TIGR03300 assembly_YfgL outer 98.4 0.00084 1.8E-08 78.0 35.7 198 46-283 64-262 (377)
266 KOG1409 Uncharacterized conser 98.4 4.9E-06 1.1E-10 88.9 14.9 85 591-699 185-269 (404)
267 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00072 1.6E-08 76.3 33.0 121 494-641 205-338 (352)
268 KOG1354 Serine/threonine prote 98.4 2.8E-06 6E-11 90.6 12.6 220 36-281 26-302 (433)
269 KOG2041 WD40 repeat protein [G 98.4 0.0017 3.6E-08 75.6 35.0 208 33-278 10-245 (1189)
270 KOG0974 WD-repeat protein WDR6 98.3 1.3E-05 2.9E-10 96.7 17.6 155 493-706 97-251 (967)
271 PLN02919 haloacid dehalogenase 98.3 0.00012 2.5E-09 95.1 27.5 227 37-284 625-892 (1057)
272 COG4946 Uncharacterized protei 98.3 0.0022 4.7E-08 71.6 32.9 213 19-284 250-481 (668)
273 COG2706 3-carboxymuconate cycl 98.3 0.00021 4.6E-09 77.7 24.4 215 27-280 79-321 (346)
274 KOG3914 WD repeat protein WDR4 98.3 1.1E-05 2.4E-10 88.2 14.5 162 490-709 69-232 (390)
275 PF00400 WD40: WD domain, G-be 98.2 4.2E-06 9E-11 62.5 6.7 36 596-631 4-39 (39)
276 KOG1064 RAVE (regulator of V-A 98.2 4.2E-06 9E-11 105.1 9.5 189 38-287 2211-2405(2439)
277 PRK01029 tolB translocation pr 98.1 0.00083 1.8E-08 79.2 26.6 184 57-284 165-363 (428)
278 COG4946 Uncharacterized protei 98.1 0.00042 9E-09 77.1 21.5 149 46-215 331-484 (668)
279 KOG4190 Uncharacterized conser 98.1 2E-05 4.2E-10 88.2 11.4 179 478-708 731-914 (1034)
280 COG2706 3-carboxymuconate cycl 98.1 0.0045 9.7E-08 67.7 28.8 194 56-282 15-223 (346)
281 PLN02919 haloacid dehalogenase 98.1 0.0027 5.9E-08 82.6 32.6 229 39-284 571-837 (1057)
282 PRK04043 tolB translocation pr 98.1 0.00069 1.5E-08 79.4 24.8 156 37-212 189-361 (419)
283 PF00957 Synaptobrevin: Synapt 98.1 6.7E-06 1.4E-10 74.1 5.9 51 986-1036 12-62 (89)
284 PF15492 Nbas_N: Neuroblastoma 98.1 0.002 4.4E-08 68.3 25.0 238 490-791 4-268 (282)
285 KOG0280 Uncharacterized conser 98.0 0.00044 9.6E-09 72.9 19.7 191 48-282 25-243 (339)
286 COG5170 CDC55 Serine/threonine 98.0 1.8E-05 3.9E-10 83.3 9.5 222 36-283 27-312 (460)
287 KOG0860 Synaptobrevin/VAMP-lik 98.0 8.3E-06 1.8E-10 74.2 5.1 52 987-1042 39-90 (116)
288 KOG2066 Vacuolar assembly/sort 97.9 0.00014 3.1E-09 85.8 15.0 187 37-280 41-233 (846)
289 KOG4532 WD40-like repeat conta 97.9 0.00042 9.2E-09 72.1 16.5 158 498-708 131-290 (344)
290 KOG3617 WD40 and TPR repeat-co 97.9 0.00098 2.1E-08 78.7 21.2 73 178-282 61-133 (1416)
291 PRK04043 tolB translocation pr 97.9 0.0082 1.8E-07 70.4 29.0 155 78-283 189-360 (419)
292 KOG2114 Vacuolar assembly/sort 97.9 0.00062 1.3E-08 81.2 19.2 197 37-281 27-244 (933)
293 TIGR03300 assembly_YfgL outer 97.9 0.0076 1.7E-07 70.0 28.3 193 46-285 104-302 (377)
294 KOG4190 Uncharacterized conser 97.8 3.7E-05 8.1E-10 86.0 8.1 211 26-283 726-951 (1034)
295 KOG4714 Nucleoporin [Nuclear s 97.8 0.00012 2.6E-09 75.8 11.0 134 605-780 181-316 (319)
296 KOG3621 WD40 repeat-containing 97.8 0.0002 4.4E-09 83.6 13.8 141 488-658 38-180 (726)
297 COG5354 Uncharacterized protei 97.8 0.027 5.8E-07 64.0 28.7 107 490-636 281-398 (561)
298 PF00400 WD40: WD domain, G-be 97.7 8E-05 1.7E-09 55.5 5.7 33 532-564 7-39 (39)
299 PF13360 PQQ_2: PQQ-like domai 97.7 0.0067 1.4E-07 65.2 22.0 193 46-284 35-234 (238)
300 KOG1832 HIV-1 Vpr-binding prot 97.7 3.2E-05 7E-10 91.1 4.1 195 33-286 1099-1297(1516)
301 PF11768 DUF3312: Protein of u 97.6 0.0012 2.5E-08 76.6 16.2 96 508-638 239-334 (545)
302 PF08450 SGL: SMP-30/Gluconola 97.6 0.09 1.9E-06 57.0 30.4 194 40-285 4-217 (246)
303 PF08450 SGL: SMP-30/Gluconola 97.6 0.032 7E-07 60.5 26.1 187 38-269 42-244 (246)
304 PF11768 DUF3312: Protein of u 97.5 0.0029 6.3E-08 73.4 17.5 75 175-283 258-332 (545)
305 KOG0280 Uncharacterized conser 97.5 0.0046 9.9E-08 65.5 17.3 152 46-213 83-247 (339)
306 KOG1354 Serine/threonine prote 97.5 0.0011 2.4E-08 71.3 12.9 181 25-211 154-362 (433)
307 KOG2695 WD40 repeat protein [G 97.5 0.00027 5.8E-09 75.9 8.2 156 89-287 225-383 (425)
308 KOG1645 RING-finger-containing 97.5 0.0035 7.5E-08 69.0 15.9 74 75-148 192-267 (463)
309 KOG0309 Conserved WD40 repeat- 97.4 0.00051 1.1E-08 80.1 9.8 124 26-149 105-234 (1081)
310 KOG2695 WD40 repeat protein [G 97.4 0.00045 9.8E-09 74.2 8.7 153 502-711 231-387 (425)
311 KOG4714 Nucleoporin [Nuclear s 97.4 0.0018 3.8E-08 67.4 11.6 148 44-209 98-255 (319)
312 KOG4532 WD40-like repeat conta 97.3 0.014 3.1E-07 61.1 17.9 153 50-214 131-288 (344)
313 PF13360 PQQ_2: PQQ-like domai 97.3 0.015 3.1E-07 62.6 19.2 145 56-216 2-148 (238)
314 KOG4640 Anaphase-promoting com 97.3 0.00084 1.8E-08 77.7 9.5 92 538-657 22-114 (665)
315 KOG0882 Cyclophilin-related pe 97.3 0.0014 3.1E-08 72.7 10.4 222 31-287 5-238 (558)
316 PF03178 CPSF_A: CPSF A subuni 97.2 0.035 7.5E-07 63.0 21.5 143 47-208 42-202 (321)
317 PF07433 DUF1513: Protein of u 97.2 0.081 1.8E-06 58.1 22.5 222 34-286 3-253 (305)
318 PF06977 SdiA-regulated: SdiA- 97.2 0.058 1.2E-06 58.2 21.3 175 31-216 17-208 (248)
319 PF07433 DUF1513: Protein of u 97.2 0.075 1.6E-06 58.3 22.1 164 41-215 56-254 (305)
320 PRK11138 outer membrane biogen 97.1 0.076 1.7E-06 62.1 23.4 223 497-782 162-394 (394)
321 KOG2079 Vacuolar assembly/sort 97.1 0.0021 4.6E-08 78.5 10.2 93 539-658 90-182 (1206)
322 KOG0882 Cyclophilin-related pe 97.1 0.0016 3.4E-08 72.4 8.2 186 493-708 18-239 (558)
323 KOG3617 WD40 and TPR repeat-co 97.0 0.015 3.3E-07 69.2 16.3 174 490-701 22-221 (1416)
324 KOG2066 Vacuolar assembly/sort 97.0 0.017 3.7E-07 68.9 16.6 144 46-208 82-233 (846)
325 PF08596 Lgl_C: Lethal giant l 97.0 0.11 2.3E-06 60.3 23.0 208 37-285 3-295 (395)
326 KOG1645 RING-finger-containing 97.0 0.038 8.2E-07 61.1 17.6 79 174-284 191-270 (463)
327 PRK02888 nitrous-oxide reducta 96.8 0.034 7.4E-07 66.3 16.9 161 41-209 198-405 (635)
328 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.061 1.3E-06 49.7 14.9 100 38-142 2-109 (111)
329 KOG0309 Conserved WD40 repeat- 96.8 0.0055 1.2E-07 71.8 10.0 202 32-282 21-234 (1081)
330 KOG1920 IkappaB kinase complex 96.6 1.1 2.4E-05 56.6 28.4 71 76-146 68-138 (1265)
331 smart00320 WD40 WD40 repeats. 96.6 0.0048 1.1E-07 43.9 5.5 35 597-631 6-40 (40)
332 KOG3621 WD40 repeat-containing 96.6 0.0081 1.8E-07 70.7 9.8 159 35-211 33-200 (726)
333 KOG2314 Translation initiation 96.6 0.19 4.2E-06 57.8 20.1 130 490-659 217-357 (698)
334 KOG1920 IkappaB kinase complex 96.5 0.14 3.1E-06 64.0 20.1 200 36-282 69-324 (1265)
335 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0061 1.3E-07 47.3 5.4 40 26-65 2-41 (47)
336 PRK11138 outer membrane biogen 96.5 0.1 2.2E-06 61.0 18.4 192 47-284 120-316 (394)
337 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.069 1.5E-06 49.4 13.1 104 539-695 2-109 (111)
338 KOG0859 Synaptobrevin/VAMP-lik 96.4 0.0024 5.1E-08 63.5 3.0 65 971-1042 122-186 (217)
339 KOG4640 Anaphase-promoting com 96.3 0.015 3.2E-07 67.8 9.6 92 34-126 19-114 (665)
340 PF00780 CNH: CNH domain; Int 96.3 1.3 2.7E-05 48.8 24.9 161 493-708 5-173 (275)
341 PF00780 CNH: CNH domain; Int 96.3 0.17 3.6E-06 55.9 17.6 149 44-215 4-172 (275)
342 KOG1897 Damage-specific DNA bi 96.3 4.8 0.0001 50.1 39.2 113 537-700 830-942 (1096)
343 KOG4649 PQQ (pyrrolo-quinoline 96.2 1.8 3.9E-05 45.8 22.9 113 493-643 21-133 (354)
344 KOG1832 HIV-1 Vpr-binding prot 95.9 0.0096 2.1E-07 71.1 5.6 189 533-788 1098-1297(1516)
345 PF03178 CPSF_A: CPSF A subuni 95.7 1.1 2.5E-05 50.6 21.4 173 58-280 3-202 (321)
346 KOG2114 Vacuolar assembly/sort 95.7 0.33 7.2E-06 58.9 16.7 139 496-657 78-223 (933)
347 KOG1275 PAB-dependent poly(A) 95.7 0.097 2.1E-06 63.5 12.3 150 38-206 180-340 (1118)
348 KOG1275 PAB-dependent poly(A) 95.6 0.34 7.3E-06 59.1 16.7 186 49-278 149-340 (1118)
349 COG0823 TolB Periplasmic compo 95.5 0.23 5E-06 58.2 15.0 153 41-211 198-361 (425)
350 PRK02888 nitrous-oxide reducta 95.5 0.87 1.9E-05 54.8 19.7 173 85-281 201-405 (635)
351 PF06433 Me-amine-dh_H: Methyl 95.5 1.8 3.9E-05 48.3 20.8 209 38-286 97-326 (342)
352 COG3391 Uncharacterized conser 95.5 3.5 7.6E-05 47.9 24.7 203 36-283 74-286 (381)
353 KOG2079 Vacuolar assembly/sort 95.5 0.063 1.4E-06 66.2 10.3 108 37-148 91-204 (1206)
354 PF04053 Coatomer_WDAD: Coatom 95.5 0.46 9.9E-06 55.9 17.2 58 90-149 118-175 (443)
355 PF04841 Vps16_N: Vps16, N-ter 95.4 5.2 0.00011 46.9 25.7 65 41-107 34-110 (410)
356 KOG4499 Ca2+-binding protein R 95.4 0.98 2.1E-05 47.0 16.7 51 189-268 222-272 (310)
357 smart00320 WD40 WD40 repeats. 95.2 0.03 6.6E-07 39.5 4.2 31 534-564 10-40 (40)
358 PF08553 VID27: VID27 cytoplas 95.2 0.47 1E-05 59.0 16.6 139 95-279 501-646 (794)
359 PF12894 Apc4_WD40: Anaphase-p 95.0 0.055 1.2E-06 42.1 5.1 33 601-633 9-41 (47)
360 PRK13616 lipoprotein LpqB; Pro 95.0 0.85 1.8E-05 55.8 18.1 153 37-208 351-525 (591)
361 KOG1008 Uncharacterized conser 94.7 0.0097 2.1E-07 69.1 0.4 199 37-281 58-276 (783)
362 COG3391 Uncharacterized conser 94.7 2.7 5.8E-05 48.9 20.6 163 37-216 117-291 (381)
363 COG3204 Uncharacterized protei 94.4 2.5 5.5E-05 45.8 17.4 176 76-279 85-262 (316)
364 PF06977 SdiA-regulated: SdiA- 94.2 3.2 6.9E-05 44.9 18.1 175 77-283 22-203 (248)
365 COG0823 TolB Periplasmic compo 94.1 1.5 3.2E-05 51.5 16.8 118 77-212 193-318 (425)
366 PF04053 Coatomer_WDAD: Coatom 94.0 2.2 4.8E-05 50.2 17.9 140 37-208 34-173 (443)
367 KOG2444 WD40 repeat protein [G 93.8 0.13 2.8E-06 53.4 6.1 109 91-218 33-142 (238)
368 PF00930 DPPIV_N: Dipeptidyl p 93.7 9.3 0.0002 43.8 22.3 101 44-145 1-129 (353)
369 KOG1008 Uncharacterized conser 93.7 0.026 5.7E-07 65.7 1.2 164 33-209 100-276 (783)
370 COG3490 Uncharacterized protei 93.6 2.2 4.8E-05 45.8 14.9 162 42-214 120-316 (366)
371 KOG3630 Nuclear pore complex, 93.5 0.86 1.9E-05 57.0 13.4 151 39-208 45-228 (1405)
372 COG3204 Uncharacterized protei 93.4 14 0.00031 40.3 22.3 180 23-210 71-265 (316)
373 KOG4649 PQQ (pyrrolo-quinoline 93.3 12 0.00025 39.9 19.4 101 47-148 23-124 (354)
374 PRK13616 lipoprotein LpqB; Pro 93.3 3.3 7.1E-05 50.8 18.2 135 56-204 328-472 (591)
375 PF08366 LLGL: LLGL2; InterPr 93.0 1.5 3.2E-05 40.4 10.9 81 309-405 15-99 (105)
376 cd00216 PQQ_DH Dehydrogenases 92.8 9.5 0.00021 45.9 21.3 103 47-154 61-188 (488)
377 KOG2444 WD40 repeat protein [G 92.7 0.21 4.5E-06 51.9 5.8 105 494-634 69-178 (238)
378 PF10647 Gmad1: Lipoprotein Lp 92.6 7.7 0.00017 42.2 18.3 150 37-198 25-185 (253)
379 COG3386 Gluconolactonase [Carb 92.2 10 0.00022 42.5 18.9 193 33-270 63-275 (307)
380 PF10647 Gmad1: Lipoprotein Lp 92.2 12 0.00027 40.7 19.3 113 77-206 24-142 (253)
381 PF14781 BBS2_N: Ciliary BBSom 92.1 5.8 0.00013 38.2 14.1 114 38-154 1-130 (136)
382 cd00216 PQQ_DH Dehydrogenases 91.8 14 0.0003 44.5 21.0 160 40-216 221-432 (488)
383 COG3386 Gluconolactonase [Carb 91.8 26 0.00056 39.3 22.7 145 42-208 31-193 (307)
384 COG5170 CDC55 Serine/threonine 91.4 1 2.2E-05 48.5 9.1 154 117-280 26-201 (460)
385 PF04841 Vps16_N: Vps16, N-ter 90.9 27 0.00058 41.0 21.5 154 36-216 81-254 (410)
386 PF02897 Peptidase_S9_N: Proly 90.6 3.3 7.2E-05 48.6 13.9 129 22-150 110-261 (414)
387 PF10168 Nup88: Nuclear pore c 90.2 12 0.00026 47.0 18.5 72 37-108 86-181 (717)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 90.2 2.5 5.4E-05 49.1 11.8 98 541-659 6-119 (415)
389 PF10395 Utp8: Utp8 family; I 90.2 54 0.0012 40.3 23.1 55 772-828 249-304 (670)
390 PF08553 VID27: VID27 cytoplas 89.8 0.88 1.9E-05 56.7 8.2 72 32-105 574-646 (794)
391 PF14781 BBS2_N: Ciliary BBSom 89.4 5.1 0.00011 38.5 11.1 121 542-704 4-129 (136)
392 PF12657 TFIIIC_delta: Transcr 88.5 2 4.4E-05 43.8 8.7 79 606-702 7-123 (173)
393 COG3490 Uncharacterized protei 88.3 18 0.00039 39.2 15.3 111 32-144 64-186 (366)
394 PF10979 DUF2786: Protein of u 88.2 0.32 6.9E-06 37.0 1.8 39 998-1036 1-39 (43)
395 PF06433 Me-amine-dh_H: Methyl 88.1 13 0.00029 41.6 15.1 165 34-217 136-329 (342)
396 PF10313 DUF2415: Uncharacteri 88.1 1.4 2.9E-05 33.5 5.0 31 604-634 1-34 (43)
397 PF08728 CRT10: CRT10; InterP 87.3 26 0.00056 43.4 18.0 157 34-208 39-246 (717)
398 KOG2395 Protein involved in va 87.2 6.6 0.00014 45.7 12.2 145 497-699 348-499 (644)
399 KOG2395 Protein involved in va 86.9 7.7 0.00017 45.2 12.5 197 36-279 277-499 (644)
400 PHA02713 hypothetical protein; 85.6 62 0.0013 39.7 20.7 27 613-639 350-381 (557)
401 PF05096 Glu_cyclase_2: Glutam 85.0 63 0.0014 35.2 20.8 178 21-217 28-212 (264)
402 PF07569 Hira: TUP1-like enhan 85.0 4 8.7E-05 43.4 8.8 67 78-147 14-95 (219)
403 PF10168 Nup88: Nuclear pore c 83.9 18 0.00039 45.4 15.0 86 118-210 85-181 (717)
404 PF14761 HPS3_N: Hermansky-Pud 83.9 22 0.00047 37.3 13.1 124 502-637 35-167 (215)
405 PF13449 Phytase-like: Esteras 83.6 54 0.0012 37.1 17.8 115 35-150 19-193 (326)
406 PF10313 DUF2415: Uncharacteri 83.0 2.8 6.1E-05 31.8 4.6 31 537-567 1-34 (43)
407 PF11715 Nup160: Nucleoporin N 82.9 6.1 0.00013 48.4 10.5 73 45-117 156-259 (547)
408 PF12234 Rav1p_C: RAVE protein 82.7 12 0.00025 45.8 12.3 113 494-632 40-155 (631)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.6 1.2E+02 0.0027 36.8 22.9 212 47-286 69-339 (527)
410 PF14761 HPS3_N: Hermansky-Pud 82.4 17 0.00036 38.1 11.6 117 89-212 29-167 (215)
411 TIGR02604 Piru_Ver_Nterm putat 81.9 27 0.00059 40.3 14.8 94 36-131 14-137 (367)
412 PLN00033 photosystem II stabil 81.0 83 0.0018 36.7 18.1 147 37-205 240-396 (398)
413 PRK13684 Ycf48-like protein; P 80.2 77 0.0017 36.0 17.5 151 35-206 172-329 (334)
414 PF15390 DUF4613: Domain of un 79.7 1.5E+02 0.0032 35.8 20.3 59 755-820 341-403 (671)
415 PF14870 PSII_BNR: Photosynthe 79.4 59 0.0013 36.3 15.6 151 490-697 151-301 (302)
416 PHA02713 hypothetical protein; 79.0 17 0.00036 44.6 12.3 25 492-516 349-378 (557)
417 PF15390 DUF4613: Domain of un 79.0 92 0.002 37.4 17.2 148 37-209 21-187 (671)
418 PF07569 Hira: TUP1-like enhan 78.3 14 0.00031 39.2 10.0 63 43-106 18-95 (219)
419 TIGR03118 PEPCTERM_chp_1 conse 77.7 1.2E+02 0.0026 33.6 24.2 118 21-145 15-168 (336)
420 PF02897 Peptidase_S9_N: Proly 77.4 28 0.0006 40.8 13.3 111 490-635 130-262 (414)
421 KOG4460 Nuclear pore complex, 77.4 29 0.00064 40.6 12.4 116 91-213 55-203 (741)
422 KOG3630 Nuclear pore complex, 75.7 17 0.00036 46.3 10.6 147 38-201 103-265 (1405)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.7 41 0.00089 40.9 14.2 39 32-70 297-338 (527)
424 PF05694 SBP56: 56kDa selenium 75.5 71 0.0015 37.2 14.9 171 34-210 131-344 (461)
425 KOG4499 Ca2+-binding protein R 74.9 35 0.00077 36.0 11.1 99 39-137 161-274 (310)
426 PF07995 GSDH: Glucose / Sorbo 74.7 38 0.00081 38.5 12.9 101 37-139 3-134 (331)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 74.1 16 0.00036 42.5 9.7 86 30-115 299-407 (415)
428 PF05935 Arylsulfotrans: Aryls 73.6 85 0.0018 37.7 16.1 152 55-218 126-311 (477)
429 KOG1916 Nuclear protein, conta 73.1 2.5 5.4E-05 51.8 2.8 69 538-632 182-264 (1283)
430 KOG2377 Uncharacterized conser 72.2 69 0.0015 37.0 13.4 131 38-187 25-164 (657)
431 PHA03098 kelch-like protein; P 71.9 1.5E+02 0.0033 35.9 18.3 66 492-568 292-368 (534)
432 PF13449 Phytase-like: Esteras 71.5 1.8E+02 0.004 32.8 17.9 117 77-198 20-166 (326)
433 PF11715 Nup160: Nucleoporin N 71.5 17 0.00036 44.6 9.7 97 546-643 156-258 (547)
434 TIGR02276 beta_rpt_yvtn 40-res 71.3 15 0.00033 27.1 6.0 40 86-125 1-41 (42)
435 PF12234 Rav1p_C: RAVE protein 70.7 71 0.0015 39.3 14.3 114 538-699 31-155 (631)
436 PF12657 TFIIIC_delta: Transcr 69.4 24 0.00053 35.9 8.8 31 604-634 86-122 (173)
437 PF14583 Pectate_lyase22: Olig 69.3 77 0.0017 36.4 13.3 79 83-164 42-124 (386)
438 TIGR02276 beta_rpt_yvtn 40-res 67.9 21 0.00046 26.3 6.1 31 613-643 1-32 (42)
439 KOG1896 mRNA cleavage and poly 66.8 72 0.0016 41.3 13.3 144 48-208 1047-1213(1366)
440 PF14779 BBS1: Ciliary BBSome 66.5 44 0.00095 36.2 10.2 73 602-697 175-255 (257)
441 KOG4441 Proteins containing BT 66.2 3.2E+02 0.007 33.6 19.2 165 492-717 282-469 (571)
442 PF14870 PSII_BNR: Photosynthe 66.2 2.3E+02 0.0049 31.8 23.5 178 54-277 121-301 (302)
443 TIGR03074 PQQ_membr_DH membran 64.4 4E+02 0.0087 34.0 25.0 72 47-118 194-290 (764)
444 KOG4441 Proteins containing BT 64.1 1.4E+02 0.003 36.8 15.4 164 492-716 330-515 (571)
445 PHA02790 Kelch-like protein; P 64.1 3.1E+02 0.0068 32.9 18.3 26 614-639 362-390 (480)
446 PF12768 Rax2: Cortical protei 63.7 76 0.0017 35.1 11.8 59 599-657 32-97 (281)
447 PF01011 PQQ: PQQ enzyme repea 63.7 9.7 0.00021 27.9 3.4 24 685-708 3-26 (38)
448 PF08728 CRT10: CRT10; InterP 63.0 48 0.001 41.2 10.9 113 34-146 99-245 (717)
449 PF02333 Phytase: Phytase; In 63.0 2.9E+02 0.0063 31.9 19.3 150 50-209 116-291 (381)
450 PF14727 PHTB1_N: PTHB1 N-term 62.9 3.1E+02 0.0067 32.2 27.7 38 47-84 37-79 (418)
451 PF05096 Glu_cyclase_2: Glutam 62.6 2.4E+02 0.0052 30.8 15.4 126 109-284 34-161 (264)
452 PF11635 Med16: Mediator compl 62.2 2.6E+02 0.0057 35.7 17.8 184 90-286 64-295 (753)
453 KOG2280 Vacuolar assembly/sort 62.1 4E+02 0.0086 33.2 20.6 77 603-704 83-159 (829)
454 KOG4460 Nuclear pore complex, 62.0 32 0.00069 40.3 8.4 78 37-114 105-206 (741)
455 PF00930 DPPIV_N: Dipeptidyl p 60.5 3E+02 0.0066 31.4 18.9 76 78-153 185-272 (353)
456 PF10214 Rrn6: RNA polymerase 60.0 2.8E+02 0.006 35.6 17.6 212 43-276 1-229 (765)
457 COG5143 SNC1 Synaptobrevin/VAM 59.5 15 0.00033 37.4 4.9 51 988-1042 140-190 (190)
458 PLN00033 photosystem II stabil 59.2 3.5E+02 0.0075 31.6 23.3 151 81-277 243-396 (398)
459 COG5167 VID27 Protein involved 58.8 21 0.00046 41.5 6.4 60 46-106 572-632 (776)
460 KOG1900 Nuclear pore complex, 58.7 3.8E+02 0.0081 35.6 17.7 116 491-632 87-204 (1311)
461 KOG2280 Vacuolar assembly/sort 58.3 1.7E+02 0.0036 36.3 13.8 43 601-643 214-256 (829)
462 KOG1898 Splicing factor 3b, su 58.0 1.8E+02 0.0039 37.4 14.4 94 601-708 580-681 (1205)
463 PHA02790 Kelch-like protein; P 58.0 1.7E+02 0.0036 35.2 14.5 66 492-568 316-386 (480)
464 TIGR03606 non_repeat_PQQ dehyd 56.8 1.5E+02 0.0033 35.1 13.4 105 33-139 28-166 (454)
465 TIGR03074 PQQ_membr_DH membran 55.5 1.3E+02 0.0029 38.2 13.4 121 88-216 194-352 (764)
466 PF05694 SBP56: 56kDa selenium 54.3 1.1E+02 0.0025 35.6 11.3 41 603-643 311-355 (461)
467 PF14727 PHTB1_N: PTHB1 N-term 53.6 4.3E+02 0.0094 31.0 31.7 122 492-636 34-166 (418)
468 PRK13684 Ycf48-like protein; P 53.3 3.9E+02 0.0084 30.4 21.8 155 76-279 172-330 (334)
469 PRK10115 protease 2; Provision 52.5 5.8E+02 0.013 32.2 24.7 116 23-139 114-244 (686)
470 smart00564 PQQ beta-propeller 51.7 21 0.00045 24.8 3.3 24 684-707 8-31 (33)
471 KOG1898 Splicing factor 3b, su 51.6 3.8E+02 0.0083 34.7 15.7 143 38-202 880-1042(1205)
472 PHA03098 kelch-like protein; P 49.9 3.1E+02 0.0067 33.3 15.4 24 493-516 341-369 (534)
473 PF12768 Rax2: Cortical protei 46.4 1.6E+02 0.0036 32.5 10.8 91 58-148 17-122 (281)
474 COG4880 Secreted protein conta 46.2 2E+02 0.0043 33.2 11.2 106 39-144 378-498 (603)
475 KOG3522 Predicted guanine nucl 46.0 25 0.00054 43.5 4.6 131 549-734 548-698 (925)
476 COG4590 ABC-type uncharacteriz 45.7 52 0.0011 37.9 6.7 155 34-210 219-388 (733)
477 TIGR02604 Piru_Ver_Nterm putat 44.2 5.5E+02 0.012 29.5 17.4 60 77-138 14-90 (367)
478 TIGR03118 PEPCTERM_chp_1 conse 43.4 5.1E+02 0.011 28.9 17.2 164 36-216 77-287 (336)
479 PF01011 PQQ: PQQ enzyme repea 43.4 64 0.0014 23.6 4.9 27 617-643 2-28 (38)
480 KOG1916 Nuclear protein, conta 43.3 25 0.00053 43.8 4.0 115 31-147 128-265 (1283)
481 KOG0861 SNARE protein YKT6, sy 42.9 21 0.00046 35.5 2.9 39 992-1030 152-190 (198)
482 TIGR03606 non_repeat_PQQ dehyd 42.7 4.3E+02 0.0094 31.4 14.1 60 77-136 30-103 (454)
483 PF02333 Phytase: Phytase; In 41.1 6.3E+02 0.014 29.3 19.4 152 86-281 66-238 (381)
484 TIGR03032 conserved hypothetic 40.9 2E+02 0.0043 32.2 10.1 29 100-128 284-315 (335)
485 COG1520 FOG: WD40-like repeat 40.6 6.1E+02 0.013 29.0 16.7 149 47-213 68-222 (370)
486 smart00564 PQQ beta-propeller 39.9 56 0.0012 22.6 4.1 26 614-640 6-31 (33)
487 PF12341 DUF3639: Protein of u 39.4 63 0.0014 22.0 3.8 24 605-630 3-26 (27)
488 PF00957 Synaptobrevin: Synapt 38.9 75 0.0016 28.3 5.7 52 991-1042 10-64 (89)
489 PF11725 AvrE: Pathogenicity f 38.3 9E+02 0.019 33.3 16.7 71 490-567 444-517 (1774)
490 PF12352 V-SNARE_C: Snare regi 37.1 92 0.002 25.9 5.6 47 989-1039 20-66 (66)
491 PF01436 NHL: NHL repeat; Int 35.8 71 0.0015 21.7 3.8 26 37-62 3-28 (28)
492 PF07995 GSDH: Glucose / Sorbo 35.4 4.7E+02 0.01 29.6 12.8 57 79-137 4-71 (331)
493 KOG2377 Uncharacterized conser 35.2 2.1E+02 0.0045 33.4 9.3 56 504-567 42-97 (657)
494 KOG3616 Selective LIM binding 34.5 62 0.0014 39.4 5.4 62 606-697 17-80 (1636)
495 KOG0862 Synaptobrevin/VAMP-lik 34.2 60 0.0013 33.9 4.6 54 988-1041 145-198 (216)
496 KOG2247 WD40 repeat-containing 33.6 10 0.00022 44.0 -1.1 101 497-635 89-190 (615)
497 PF11635 Med16: Mediator compl 31.9 1.3E+02 0.0028 38.3 8.2 81 21-101 245-345 (753)
498 COG5167 VID27 Protein involved 31.8 9.6E+02 0.021 28.7 17.2 138 94-280 486-632 (776)
499 PF14779 BBS1: Ciliary BBSome 31.4 2.4E+02 0.0052 30.7 8.8 69 33-102 174-254 (257)
500 PF10779 XhlA: Haemolysin XhlA 30.9 1.1E+02 0.0023 26.2 5.0 46 993-1041 8-53 (71)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-42 Score=386.89 Aligned_cols=594 Identities=14% Similarity=0.162 Sum_probs=385.6
Q ss_pred ccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcC-CCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 001621 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1043)
Q Consensus 24 ~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~-~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~v 102 (1043)
+++++.+..|-.+.-..+.|++||.-+.+- ...+|.|||. ++...++.+..+..|+.++.+|+|.+|++++.+|...+
T Consensus 3 ~efrfsNllGTvyr~Gnl~ft~dG~sviSP-vGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~l 81 (893)
T KOG0291|consen 3 TEFRFSNLLGTVYRAGNLVFTKDGNSVISP-VGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALL 81 (893)
T ss_pred cccchhhcccceeecCcEEECCCCCEEEec-cCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEE
Confidence 567778888888888999999999876554 3358999997 56778888888999999999999999999999999999
Q ss_pred EECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEE
Q 001621 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1043)
Q Consensus 103 Wdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl 182 (1043)
-++..+..++.+.+..+|.|+.|+|+|.++++|..+- ++||........ ...||.....+ .+|...|++|
T Consensus 82 vs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~--------~g~fddi~si 151 (893)
T KOG0291|consen 82 VSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTY--------LGHFDDITSI 151 (893)
T ss_pred EecccceeeEEEeecCccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeee--------cCCccceeEE
Confidence 9999999999999999999999999999999998764 889987654331 12256554322 3577899999
Q ss_pred EecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC
Q 001621 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1043)
Q Consensus 183 ~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g 262 (1043)
.|+- |.+.+++|+.|.+++||+++..+-..... + ..|...|.+..|. .|.
T Consensus 152 ~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~-----l----------------------~gHkd~VvacfF~-~~~ 201 (893)
T KOG0291|consen 152 DWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYA-----L----------------------NGHKDYVVACFFG-ANS 201 (893)
T ss_pred Eecc--CCceEEeccccceEEEEEeccccccceEe-----c----------------------cCCCcceEEEEec-cCc
Confidence 9997 48888999999999999998765422211 0 0146778887775 899
Q ss_pred CEEEEEEcCCcEEEEcCCCCC--ccccccCC-CCCcceeeecccccCCcceEEEEeecCCC-CCCCCCceEEEecCCCCC
Q 001621 263 SILAVGYIDGDILLWNTSTTA--STKGQQTG-SRNNVVKLELSSAERRLPVIVLHWSTNKE-SRSNIDGRLFVYGGDEIG 338 (1043)
Q Consensus 263 ~~l~tg~~DG~I~iWd~~tg~--~~~~~~~~-~~~~i~~l~~~~~~~~~~i~~l~w~~~~~-~~~~~~~~llv~gg~~~~ 338 (1043)
..+.|.+.||.|.+|.....- ........ ........+ .+ .+.+..+.|.-..+ ..+.....+.++.-.
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~--~~--Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH--- 274 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDE--DG--EEKTHKIFWYKTKKHYLNQNSSKVTAAAFH--- 274 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccc--cc--hhhhcceEEEEEEeeeecccccceeeeecc---
Confidence 999999999999999886321 11100000 000000000 00 00111111110000 000000111111110
Q ss_pred CcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCC
Q 001621 339 SEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 418 (1043)
Q Consensus 339 ~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~ 418 (1043)
....++..+++++...++..+ +|.++...+ -+..++..+++...|.+..+..+.+
T Consensus 275 --~~t~~lvvgFssG~f~LyelP-----------~f~lih~LS--is~~~I~t~~~N~tGDWiA~g~~kl---------- 329 (893)
T KOG0291|consen 275 --KGTNLLVVGFSSGEFGLYELP-----------DFNLIHSLS--ISDQKILTVSFNSTGDWIAFGCSKL---------- 329 (893)
T ss_pred --CCceEEEEEecCCeeEEEecC-----------CceEEEEee--cccceeeEEEecccCCEEEEcCCcc----------
Confidence 011122222223222222211 111221111 0111222223333333333221100
Q ss_pred CCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEE
Q 001621 419 PSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVY 498 (1043)
Q Consensus 419 ~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l 498 (1043)
. ...++.|.......++| ||.....++ +++|||+++
T Consensus 330 --------g---------------------QLlVweWqsEsYVlKQQ--------------gH~~~i~~l-~YSpDgq~i 365 (893)
T KOG0291|consen 330 --------G---------------------QLLVWEWQSESYVLKQQ--------------GHSDRITSL-AYSPDGQLI 365 (893)
T ss_pred --------c---------------------eEEEEEeeccceeeecc--------------ccccceeeE-EECCCCcEE
Confidence 0 01122233322223332 333344445 799999999
Q ss_pred EEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccce----
Q 001621 499 LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF---- 574 (1043)
Q Consensus 499 ~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~---- 574 (1043)
|||+.||.|||||..++. ++. .+..|+..|+++.|+..++.|++++.||+||.||+...++..++
T Consensus 366 aTG~eDgKVKvWn~~Sgf--C~v---------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGF--CFV---------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EeccCCCcEEEEeccCce--EEE---------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence 999999999999999987 222 45689999999999999999999999999999999987654332
Q ss_pred --eeec---cCCCceeeecCCCcc----------eeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCce-EE
Q 001621 575 --LFVL---ETKSEVHALPEGKIS----------LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS-VL 638 (1043)
Q Consensus 575 --~f~~---~~~~~~~~~~~~~~~----------~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~-~l 638 (1043)
+|.+ +..+++......+.| +.+-++.+|.+||.+|+|+|+|..||+||+|.||++||+-... .+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 2222 233444333332222 2233478999999999999999999999999999999995542 22
Q ss_pred EEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCcee
Q 001621 639 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIA 718 (1043)
Q Consensus 639 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a 718 (1043)
-+.. ..+.|+.+.|+|+|.. |+++|.||.|.+||.+.+..+++. .+...
T Consensus 515 Etl~----i~sdvl~vsfrPdG~e----------------------laVaTldgqItf~d~~~~~q~~~I-----dgrkD 563 (893)
T KOG0291|consen 515 ETLE----IRSDVLAVSFRPDGKE----------------------LAVATLDGQITFFDIKEAVQVGSI-----DGRKD 563 (893)
T ss_pred eeEe----eccceeEEEEcCCCCe----------------------EEEEEecceEEEEEhhhceeeccc-----cchhh
Confidence 2222 3578999999876632 999999999999999887655444 11111
Q ss_pred EEEEEeccEEEEeeCcccCCCcceeee---cccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhhhhcccc
Q 001621 719 ISMEVIDSVRLYSRKSVIQGNNKTVQK---VKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMS 794 (1043)
Q Consensus 719 ~~~~v~~~irl~~~~~~~~g~~k~~~k---~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~ 794 (1043)
+.+.++..++ .+-...-++. .++++.+|.++++++.+..||||++|+.-+++++++..
T Consensus 564 -----------------~~~gR~~~D~~ta~~sa~~K~Ft-ti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 564 -----------------LSGGRKETDRITAENSAKGKTFT-TICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred -----------------ccccccccceeehhhcccCCceE-EEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence 1122333332 1112233343 46667999999999999999999999999999888765
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-39 Score=362.39 Aligned_cols=547 Identities=13% Similarity=0.113 Sum_probs=387.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEe--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~--~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
+..+++++.+|++.+|.++...+.+++|..+..+++.. ..|..||-.++|.|.+..|++++.|+.++|||+..+.+++
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 44699999999999999999999999999988776543 3468999999999999999999999999999999999999
Q ss_pred Eeec-CCCEEEEEEeCCCCE--EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 113 CLKW-ESNITAFSVISGSHF--MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 113 ~~~~-~~~Vtav~~sp~~~~--l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
.+++ ++.|.++.|.|+-.+ |++|..|+.+++|++...+.++. .-..|.+.|++++|.++
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~----------------~~~~H~S~vtsL~~~~d-- 203 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH----------------TMILHKSAVTSLAFSED-- 203 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH----------------HHHhhhhheeeeeeccC--
Confidence 9987 589999999998664 88999999999999875432111 01357889999999995
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCC-----CCE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----GSI 264 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~-----g~~ 264 (1043)
+..++++++|..|.|||+.+-+....+.- ...+-++.+. ++ |.+
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~------------------------------ye~~E~vv~l-~~~~~~~~~~ 252 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPL------------------------------YESLESVVRL-REELGGKGEY 252 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheech------------------------------hhheeeEEEe-chhcCCcceE
Confidence 66799999999999999976655444321 3445566665 66 779
Q ss_pred EEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEE
Q 001621 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~lt 344 (1043)
+.|++.+|.+++||.+++++...+.... .. .+..+.. .+..+++++... .+.+-
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~---~~-----------e~~~~~~-------~~~~~~~l~vta-----eQnl~ 306 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSD---SE-----------EIDHLLA-------IESMSQLLLVTA-----EQNLF 306 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCC---ch-----------hhhccee-------ccccCceEEEEc-----cceEE
Confidence 9999999999999999987654322110 00 0111100 111233333332 24566
Q ss_pred EEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCc
Q 001621 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1043)
Q Consensus 345 v~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~ 424 (1043)
+++.+. +. ..+.-...++.|.||+++.+. -..++|.++++++.+|+.....+.
T Consensus 307 l~d~~~------l~-i~k~ivG~ndEI~Dm~~lG~e-------~~~laVATNs~~lr~y~~~~~~c~------------- 359 (775)
T KOG0319|consen 307 LYDEDE------LT-IVKQIVGYNDEILDMKFLGPE-------ESHLAVATNSPELRLYTLPTSYCQ------------- 359 (775)
T ss_pred EEEccc------cE-EehhhcCCchhheeeeecCCc-------cceEEEEeCCCceEEEecCCCceE-------------
Confidence 654321 11 011123456789999977432 124888899999999986544333
Q ss_pred cCCcccCCCCCcceEEE------EEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEE
Q 001621 425 EFPGVIPISDPIMTVAE------FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVY 498 (1043)
Q Consensus 425 ~~~~~l~~~~~~it~~~------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l 498 (1043)
.++.|...|.++. +...+.++.++.+|..--...+.. .+ -...||...+..++.-.....+|
T Consensus 360 ----ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~--~~------a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 360 ----IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL--CV------AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred ----EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh--hh------hhhcccccccceeeecccCccEE
Confidence 3444555555444 334455677888895300010000 00 01345555555552223345689
Q ss_pred EEEeCCCcEEEEeCCCCCce-eeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeee
Q 001621 499 LAGYHDGSVRIWDATYPVFK-LICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 577 (1043)
Q Consensus 499 ~tg~~DgtVriWD~~~~~l~-~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~ 577 (1043)
+++|.|+++++|++....-. ....+.. +-....|.-.|+||+++|+.+++|+|+.|.+++||++....
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~---~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-------- 496 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTC---RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-------- 496 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehh---hHHHHhhcccccceEecCCCceEEecccccceeeecccCce--------
Confidence 99999999999998773210 0011100 00124688899999999999999999999999999997422
Q ss_pred ccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEE
Q 001621 578 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1043)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs 657 (1043)
...+|.+|+-.|.||.|||..+.||++|.|+||+||.+.+.+++.+. ++|...|...+|-
T Consensus 497 -----------------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 497 -----------------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFI 556 (775)
T ss_pred -----------------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeee
Confidence 22568999999999999999999999999999999999999998774 4578999999997
Q ss_pred eecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccC
Q 001621 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQ 737 (1043)
Q Consensus 658 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~ 737 (1043)
.++. .|+++..||-|.+|+..+++++.+.-.+. =|+|-+..
T Consensus 557 ~~~~----------------------qliS~~adGliKlWnikt~eC~~tlD~H~--------------DrvWaL~~--- 597 (775)
T KOG0319|consen 557 RNGK----------------------QLISAGADGLIKLWNIKTNECEMTLDAHN--------------DRVWALSV--- 597 (775)
T ss_pred eCCc----------------------EEEeccCCCcEEEEeccchhhhhhhhhcc--------------ceeEEEee---
Confidence 6553 39999999999999999999876651111 13444421
Q ss_pred CCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhh
Q 001621 738 GNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVM 788 (1043)
Q Consensus 738 g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~ 788 (1043)
++.+..+++++.||.|-.|-=-+.++..
T Consensus 598 -----------------------~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ 625 (775)
T KOG0319|consen 598 -----------------------SPLLDMFVTGGGDGRIIFWKDVTEEEQN 625 (775)
T ss_pred -----------------------cCccceeEecCCCeEEEEeecCcHHHHH
Confidence 3556678999999999998654555443
No 3
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-35 Score=318.48 Aligned_cols=529 Identities=13% Similarity=0.152 Sum_probs=328.9
Q ss_pred eecc-cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC---CCCeEEEEEecCCCEEEEEECC--CcEEE
Q 001621 29 AVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS---QLPYKNLEFLQNQGFLISITND--NEIQV 102 (1043)
Q Consensus 29 ~~~~-G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~---~~~V~~l~Fs~d~~~Lvs~s~d--~~I~v 102 (1043)
...| +|...++...|+|.|.++|+|...|.|||||..+.+.++..+- ..+|+.|+|..|+.++++++.. +..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 3444 4778899999999999999999999999999888776654432 5799999999999999999864 33444
Q ss_pred EECCCCceeEEeecC-CCEEEEEEeCCCCE-EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 103 WSLESRSLACCLKWE-SNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 103 Wdl~t~~~l~~~~~~-~~Vtav~~sp~~~~-l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
+-+++|.-+..+..| ..|++++|-|...+ +++|++|++|-++ +. .||++.. ..+.|..-|.
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eG-------PPFKFk~--------s~r~HskFV~ 194 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EG-------PPFKFKS--------SFREHSKFVN 194 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe--eC-------CCeeeee--------ccccccccee
Confidence 444577788888877 57999999999875 8899999988654 32 1566552 1245777899
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecC
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1043)
++.|+|+ |.++++++.||.|.+||-.+++.+..++. +..|...|.+++|+ |
T Consensus 195 ~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~--------------------------~~aHkGsIfalsWs-P 245 (603)
T KOG0318|consen 195 CVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELED--------------------------SDAHKGSIFALSWS-P 245 (603)
T ss_pred eEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecC--------------------------CCCccccEEEEEEC-C
Confidence 9999994 89999999999999999999998887753 12258899999996 9
Q ss_pred CCCEEEEEEcCCcEEEEcCCCCCccccccCC--CCCcceeeecccccCCcceEEEEeecCCCCCCCCCce--EEEecCCC
Q 001621 261 SGSILAVGYIDGDILLWNTSTTASTKGQQTG--SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR--LFVYGGDE 336 (1043)
Q Consensus 261 ~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~--~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~--llv~gg~~ 336 (1043)
|+++++|++.|.++++||+.+.++..+.+-. ..+.+..+.|. +..++.+.........++.+.. ..++|.
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----kd~lItVSl~G~in~ln~~d~~~~~~i~GH-- 319 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----KDHLITVSLSGTINYLNPSDPSVLKVISGH-- 319 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe----CCeEEEEEcCcEEEEecccCCChhheeccc--
Confidence 9999999999999999999998876643311 11223333331 1122222111000000111111 112221
Q ss_pred CCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCC--CC-CC-CccEEEEEcCCCeEEE--eeccccee
Q 001621 337 IGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA--TV-GN-HKADLFVLTSPGQLHF--YDNASLTT 410 (1043)
Q Consensus 337 ~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~--~g-~~-~~~~l~vl~~~G~l~~--~d~~~~~~ 410 (1043)
.+.+|.+.+.-.. .. .+.-..+|.+.....-...+. .| .| +++.-+...+.|+++. ||+.-...
T Consensus 320 ---nK~ITaLtv~~d~--~~-----i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 320 ---NKSITALTVSPDG--KT-----IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred ---ccceeEEEEcCCC--CE-----EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 1223332221000 00 000011111111110000000 00 01 2222333344455543 44421111
Q ss_pred ecccCCCCCC---CCCccCCcccCCCCCc-ceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCC
Q 001621 411 LLSQQEKKPS---VCPVEFPGVIPISDPI-MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV 486 (1043)
Q Consensus 411 ~l~~~~~~~~---~~~~~~~~~l~~~~~~-it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~ 486 (1043)
-+... +... .+....|..+....+. +..+++.. +.. +.. ..+. . ..-|+.- ..
T Consensus 390 ~~~~~-~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~----~iv--~l~----~~~~---~-----~~~~~~y----~~ 446 (603)
T KOG0318|consen 390 SLKDN-GYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS----DIV--LLQ----DQTK---V-----SSIPIGY----ES 446 (603)
T ss_pred ecccC-cccccceeecCCCceeEEEcCCCCEEEEEecC----cEE--EEe----cCCc---c-----eeecccc----cc
Confidence 01111 1100 1111223222222221 11111110 000 000 0000 0 0001111 11
Q ss_pred CccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEec
Q 001621 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 487 ~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~ 566 (1043)
+..+++|+++.++.|+.||.|+|+-+....+... .....|+++|++|+||||+.+||+|+..+.|.+||..
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---------~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---------AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccce---------eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 1227899999999999999999999988763221 1234788999999999999999999999999999998
Q ss_pred CCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCC
Q 001621 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1043)
Q Consensus 567 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~ 646 (1043)
...... ..+..|++.|.||+|||+.++||+|+.|-.|.||++..|.-... .+..
T Consensus 518 s~~~~~------------------------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~--iknA 571 (603)
T KOG0318|consen 518 SREVKT------------------------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII--IKNA 571 (603)
T ss_pred cCceec------------------------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE--eccc
Confidence 753210 12346999999999999999999999999999999998754322 2223
Q ss_pred CCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCC
Q 001621 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1043)
Q Consensus 647 ~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~ 700 (1043)
|...|+++.|-. +..|++.+.|..|++|...
T Consensus 572 H~~gVn~v~wld-----------------------e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 HLGGVNSVAWLD-----------------------ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cccCceeEEEec-----------------------CceEEeccCcceeEEeccc
Confidence 556699999952 3449999999999999864
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-36 Score=335.89 Aligned_cols=551 Identities=15% Similarity=0.187 Sum_probs=365.1
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC---CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec-
Q 001621 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP---SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW- 116 (1043)
Q Consensus 41 lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~---~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~- 116 (1043)
++|+++|+.|++...| .|.+-|....+..+.+. ....+++++..||+.+|++++....+++|++.+++++.++..
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 8999999999999876 67777877666533222 346899999999999999999999999999999999998864
Q ss_pred -CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEE
Q 001621 117 -ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1043)
Q Consensus 117 -~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~ 195 (1043)
+++|--++|+|.+..+++|+.||.|+||+|... |.+. ..++|.+.|.++.|+|.-....|++
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~--------~~th---------~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG--------YCTH---------SFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCC--------EEEE---------EecCCCceEEEEEeCCccchhheee
Confidence 689999999999999999999999999999874 3222 1246789999999999644445788
Q ss_pred EECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcE
Q 001621 196 AYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1043)
Q Consensus 196 ~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I 274 (1043)
|+.|+++++||+.+... +..+ ..|...|+++.|. +|+..+++++.|..+
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~-----------------------------~~H~S~vtsL~~~-~d~~~~ls~~RDkvi 216 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTM-----------------------------ILHKSAVTSLAFS-EDSLELLSVGRDKVI 216 (775)
T ss_pred cCCCceEEEEEcccCchHHHHH-----------------------------Hhhhhheeeeeec-cCCceEEEeccCcEE
Confidence 99999999999986654 2111 1147889999996 999999999999999
Q ss_pred EEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccccc
Q 001621 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1043)
Q Consensus 275 ~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~ 354 (1043)
.+||+.+-+..... |++. .-+.+..+ ... .+.. +.++++.|.+ ..+++|+-....
T Consensus 217 ~vwd~~~~~~l~~l------p~ye-------~~E~vv~l--~~~---~~~~-~~~~~TaG~~----g~~~~~d~es~~-- 271 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTL------PLYE-------SLESVVRL--REE---LGGK-GEYIITAGGS----GVVQYWDSESGK-- 271 (775)
T ss_pred EEeehhhhhhhhee------chhh-------heeeEEEe--chh---cCCc-ceEEEEecCC----ceEEEEecccch--
Confidence 99999544433221 1110 00111111 000 0122 2344444332 457776643111
Q ss_pred ccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCC
Q 001621 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1043)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 434 (1043)
|..+...+...++.+...++..+ -+++++.+-++.+||..++...-..-+ + +.....+.+..
T Consensus 272 ----~~~~~~~~~~~e~~~~~~~~~~~--------~~l~vtaeQnl~l~d~~~l~i~k~ivG-~-----ndEI~Dm~~lG 333 (775)
T KOG0319|consen 272 ----CVYKQRQSDSEEIDHLLAIESMS--------QLLLVTAEQNLFLYDEDELTIVKQIVG-Y-----NDEILDMKFLG 333 (775)
T ss_pred ----hhhhhccCCchhhhcceeccccC--------ceEEEEccceEEEEEccccEEehhhcC-C-----chhheeeeecC
Confidence 11111112122344444444332 267778888899887544421110000 0 00111111122
Q ss_pred CcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCC
Q 001621 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1043)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~ 514 (1043)
+.-..+++.++... +++.. ... .... .+.||...+.++ .....|.+|+||+.|.+|++|-+..
T Consensus 334 ~e~~~laVATNs~~---lr~y~----~~~--------~~c~-ii~GH~e~vlSL-~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 334 PEESHLAVATNSPE---LRLYT----LPT--------SYCQ-IIPGHTEAVLSL-DVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred CccceEEEEeCCCc---eEEEe----cCC--------CceE-EEeCchhheeee-eecccCcEEEEecCCceEEEEEecC
Confidence 22222233222211 11110 000 0001 366777777666 3446678999999999999997743
Q ss_pred CCceeeeeeccceeeEEecCCCCCeEEEEEecCC-CeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcc
Q 001621 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1043)
Q Consensus 515 ~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~-~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 593 (1043)
+.-..++.- ...+|+..|.+|++|..+ ..||+++.|+++++|++........ . -.+
T Consensus 397 ~~~~~~~~a-------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----------~------~~~ 453 (775)
T KOG0319|consen 397 NCSKSLCVA-------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF----------P------IVL 453 (775)
T ss_pred Ccchhhhhh-------hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc----------c------cee
Confidence 321111111 124899999999998775 4679999999999999976221100 0 001
Q ss_pred eeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCC
Q 001621 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSE 673 (1043)
Q Consensus 594 ~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~ 673 (1043)
.+..+...|...|+||+++|+.+++|+||.|.+.+||+++...++... ++|..+|-++.|++.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~-------------- 516 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKN-------------- 516 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccc--------------
Confidence 122234679999999999999999999999999999999988877654 458899999999854
Q ss_pred CCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccCCcce
Q 001621 674 REVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCC 753 (1043)
Q Consensus 674 ~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~ 753 (1043)
+.+|++++.|.+|++|...++.++++. . |...... .|
T Consensus 517 --------dq~laT~SgD~TvKIW~is~fSClkT~-----e-----------------------GH~~aVl------ra- 553 (775)
T KOG0319|consen 517 --------DQLLATCSGDKTVKIWSISTFSCLKTF-----E-----------------------GHTSAVL------RA- 553 (775)
T ss_pred --------cceeEeccCCceEEEEEeccceeeeee-----c-----------------------CccceeE------ee-
Confidence 366999999999999999999887765 1 1111111 11
Q ss_pred eEEeeeecceeEEEEEEEeeCcEEEEeCCChhhh
Q 001621 754 WASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELV 787 (1043)
Q Consensus 754 ~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~ 787 (1043)
.|+ .+|..||+++.||.|+||.+.+-+=+
T Consensus 554 --~F~---~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 554 --SFI---RNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred --eee---eCCcEEEeccCCCcEEEEeccchhhh
Confidence 221 46889999999999999999755533
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-36 Score=316.84 Aligned_cols=362 Identities=14% Similarity=0.149 Sum_probs=270.1
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
|..+|.+++|+|++.+|++++.|.++++||+.|..++++...| .-|.|++++|||.+|++|+-||+|++|+-.... .
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~--~ 191 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ--Q 191 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC--c
Confidence 5679999999999999999999999999999999999999877 679999999999999999999999999754421 1
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCC---CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS---SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d---~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1043)
.- + ..++|...|++|+|.|-. .+++|++++.||.|+|||+..++++..+.+
T Consensus 192 ~g-----------~---~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg------------ 245 (480)
T KOG0271|consen 192 IG-----------R---ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG------------ 245 (480)
T ss_pred cc-----------c---cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc------------
Confidence 10 0 124688899999998831 355789999999999999999998877644
Q ss_pred CCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcce
Q 001621 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1043)
Q Consensus 231 ~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i 310 (1043)
|..+|+|++|- ...+|++|+.|++|++|+...|.+.....+ |...|
T Consensus 246 -----------------HT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkG---------------Hahwv 291 (480)
T KOG0271|consen 246 -----------------HTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKG---------------HAHWV 291 (480)
T ss_pred -----------------CccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcc---------------cchhe
Confidence 47899999994 445899999999999999988876543221 22233
Q ss_pred EEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccE
Q 001621 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1043)
Q Consensus 311 ~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~ 390 (1043)
..++. +.+ ..|+. |+
T Consensus 292 N~lal-------sTd---------------y~LRt--------------------------------------ga----- 306 (480)
T KOG0271|consen 292 NHLAL-------STD---------------YVLRT--------------------------------------GA----- 306 (480)
T ss_pred eeeec-------cch---------------hhhhc--------------------------------------cc-----
Confidence 33311 000 00000 00
Q ss_pred EEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCc
Q 001621 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1043)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 470 (1043)
||.. ...+... ...++ + -++.+++
T Consensus 307 ------------f~~t-----------------~~~~~~~-------------se~~~----~-Al~rY~~--------- 330 (480)
T KOG0271|consen 307 ------------FDHT-----------------GRKPKSF-------------SEEQK----K-ALERYEA--------- 330 (480)
T ss_pred ------------cccc-----------------cccCCCh-------------HHHHH----H-HHHHHHH---------
Confidence 1100 0000000 00000 0 0111111
Q ss_pred cCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCe
Q 001621 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1043)
Q Consensus 471 ~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~ 550 (1043)
.....+..|++|+.|+++-+|+..... +++. .+.+|..-|+.+.||||+++
T Consensus 331 -------------------~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~---------rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 331 -------------------VLKDSGERLVSGSDDFTLFLWNPFKSK-KPIT---------RMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred -------------------hhccCcceeEEecCCceEEEecccccc-cchh---------hhhchhhheeeEEECCCccE
Confidence 112334689999999999999865433 1221 35699999999999999999
Q ss_pred EEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEE
Q 001621 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1043)
Q Consensus 551 La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vw 630 (1043)
+|+++-|.+|++|+-.+++.. ..|.+|-++|..++||.|.++|++||.|.|+++|
T Consensus 382 IASaSFDkSVkLW~g~tGk~l-------------------------asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFL-------------------------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EEEeecccceeeeeCCCcchh-------------------------hhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 999999999999998876432 4578999999999999999999999999999999
Q ss_pred EcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEc
Q 001621 631 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1043)
Q Consensus 631 D~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d 698 (1043)
|+++.++.+.+ +++...|-++.|+++| ..+++|.+|.-+++|-
T Consensus 437 ~V~tkKl~~DL---pGh~DEVf~vDwspDG----------------------~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDL---PGHADEVFAVDWSPDG----------------------QRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccC---CCCCceEEEEEecCCC----------------------ceeecCCCceEEEeec
Confidence 99998876543 4577899999998766 3489999999999984
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-35 Score=305.15 Aligned_cols=371 Identities=14% Similarity=0.162 Sum_probs=268.4
Q ss_pred ccCccceeeec-----ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEE
Q 001621 21 AADLNLRIAVH-----YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISI 94 (1043)
Q Consensus 21 ~~~~~~~~~~~-----~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~ 94 (1043)
...|..|.++| .||.+.|.|++|+|+|+.||+|+.|.++|+||.......++.. |..-|.+++|+||+..|+++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcc
Confidence 45667776666 4899999999999999999999999999999987766665543 57899999999999999999
Q ss_pred ECCCcEEEEECCCCcee-EEeecC-CCEEEEEEe-----CCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 95 TNDNEIQVWSLESRSLA-CCLKWE-SNITAFSVI-----SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 95 s~d~~I~vWdl~t~~~l-~~~~~~-~~Vtav~~s-----p~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
+.||+|++||-.+|+++ ..+..| ..|+++++- |..+++++++.||+|+||+.......+ .+
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-----~l------- 243 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-----TL------- 243 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-----Ee-------
Confidence 99999999999998865 456655 689999885 567899999999999999987632221 11
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
.+|..+|+||.|-- +| ++.+|+.|++|++|+...|++...+.+
T Consensus 244 -----sgHT~~VTCvrwGG--~g-liySgS~DrtIkvw~a~dG~~~r~lkG----------------------------- 286 (480)
T KOG0271|consen 244 -----SGHTASVTCVRWGG--EG-LIYSGSQDRTIKVWRALDGKLCRELKG----------------------------- 286 (480)
T ss_pred -----ccCccceEEEEEcC--Cc-eEEecCCCceEEEEEccchhHHHhhcc-----------------------------
Confidence 36888999999986 36 699999999999999999888766644
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCc
Q 001621 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~ 327 (1043)
|...|..++.+ .+ ..|=+|.-|-+ +.............+.+ ... ++ ++.+
T Consensus 287 HahwvN~lals-Td-y~LRtgaf~~t--------~~~~~~~se~~~~Al~r-----------Y~~---~~------~~~~ 336 (480)
T KOG0271|consen 287 HAHWVNHLALS-TD-YVLRTGAFDHT--------GRKPKSFSEEQKKALER-----------YEA---VL------KDSG 336 (480)
T ss_pred cchheeeeecc-ch-hhhhccccccc--------cccCCChHHHHHHHHHH-----------HHH---hh------ccCc
Confidence 25567777653 22 22333332211 11111000000001110 000 11 1233
Q ss_pred eEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeeccc
Q 001621 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1043)
Q Consensus 328 ~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~ 407 (1043)
..||+|+++ .++++|+...
T Consensus 337 erlVSgsDd-------------------------------------------------------------~tlflW~p~~ 355 (480)
T KOG0271|consen 337 ERLVSGSDD-------------------------------------------------------------FTLFLWNPFK 355 (480)
T ss_pred ceeEEecCC-------------------------------------------------------------ceEEEecccc
Confidence 556676654 1222344210
Q ss_pred ceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCC
Q 001621 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1043)
Q Consensus 408 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~ 487 (1043)
...| + . -.+||...+..
T Consensus 356 ----------------~kkp---------i----------------------~----------------rmtgHq~lVn~ 372 (480)
T KOG0271|consen 356 ----------------SKKP---------I----------------------T----------------RMTGHQALVNH 372 (480)
T ss_pred ----------------cccc---------h----------------------h----------------hhhchhhheee
Confidence 0000 0 0 01223223333
Q ss_pred ccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecC
Q 001621 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 488 ~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~ 567 (1043)
+ .|+||++++|+++.|.+||+||..+|+. +. .+.||-.+|..++||.|.++|++|+.|-+++||++.+
T Consensus 373 V-~fSPd~r~IASaSFDkSVkLW~g~tGk~--la---------sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 373 V-SFSPDGRYIASASFDKSVKLWDGRTGKF--LA---------SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred E-EECCCccEEEEeecccceeeeeCCCcch--hh---------hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 4 7999999999999999999999999982 22 2358889999999999999999999999999999987
Q ss_pred CCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001621 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1043)
Q Consensus 568 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD 631 (1043)
..- ...|.+|...|.++.|||||+.+|+|+.|..+++|-
T Consensus 441 kKl-------------------------~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKL-------------------------KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eee-------------------------cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 531 134689999999999999999999999999999994
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=294.86 Aligned_cols=533 Identities=17% Similarity=0.231 Sum_probs=346.0
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
..++|++-+|+.-+||+|-.||.|+||+..+.+..+.+. |+..|+.+.|...|.+|++++.|+.|.|||+-...-+..+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 579999999999999999999999999998777776664 6789999999999999999999999999999888888888
Q ss_pred ecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEE
Q 001621 115 KWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1043)
Q Consensus 115 ~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~l 193 (1043)
.+| ..||.+-|..+.+++++.+.|+.|++|+++..-+ +.. ...|.+.|+++++++ +++
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC--------f~T---------hvd~r~Eiw~l~~~~----~~l 204 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC--------FET---------HVDHRGEIWALVLDE----KLL 204 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee--------eeE---------EecccceEEEEEEec----ceE
Confidence 876 7899999999899999999999999999987421 111 123567899999987 368
Q ss_pred EEEECCCeEEEEEccCC-------eEEE--EeC-------CcccccccccccCCCCC----CCCc----------ccC--
Q 001621 194 LIAYENALVILWDVSEA-------QIIF--VGG-------GKDLQLKDGVVDSPSEG----DSTF----------LEG-- 241 (1043)
Q Consensus 194 l~~~~dg~I~lWd~~~~-------~~~~--~~~-------~~~~~~~~~~~~~~~~~----~~~~----------g~~-- 241 (1043)
++++.++.+.+|++... ..+. ..+ ++..++.. .+... .+++ .++
T Consensus 205 vt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~----d~s~r~~~c~g~d~~~e~frI~s~~E~~ 280 (888)
T KOG0306|consen 205 VTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT----DFSDRFLVCQGADKVIELFRIRSKEEIA 280 (888)
T ss_pred EEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee----cCcccEEEEecchhhhhheeecCHHHHH
Confidence 99999999999999211 0000 000 00000000 00000 0000 000
Q ss_pred --ccC----------------C--------------CCCCCCeEEEEEecCCCCE---EEEEEcCCcEEEEcCCCCCccc
Q 001621 242 --ISE----------------H--------------QPEEKEISALCWASSSGSI---LAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 242 --~~~----------------~--------------~~~~~~V~sl~w~sp~g~~---l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
+.. + ..-...+.++.|. |.+.. ++. -.++++.++.++......
T Consensus 281 k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~-~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 281 KILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVT-PSGGTENTLVL-LANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEE-ecCCcceeEEE-eecCceEEEEeccCCCCC
Confidence 000 0 0002334455554 44321 222 455566665554411110
Q ss_pred cccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeec
Q 001621 287 GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT 366 (1043)
Q Consensus 287 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~ 366 (1043)
..+..+..+.. ..|+..|+.+..+. +..++.+|+. +.+.+|..+ +.+|.+.+.-
T Consensus 359 ----p~~~~~~~i~~--~GHR~dVRsl~vS~--------d~~~~~Sga~-----~SikiWn~~------t~kciRTi~~- 412 (888)
T KOG0306|consen 359 ----PEADRTSNIEI--GGHRSDVRSLCVSS--------DSILLASGAG-----ESIKIWNRD------TLKCIRTITC- 412 (888)
T ss_pred ----ccccccceeee--ccchhheeEEEeec--------CceeeeecCC-----CcEEEEEcc------CcceeEEecc-
Confidence 11111222222 23555666663321 3345555543 457777643 3345444321
Q ss_pred CCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEecc
Q 001621 367 LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLP 446 (1043)
Q Consensus 367 ~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~ 446 (1043)
+-+....++|.+. .+++...+|+|.+||.++.. .....+.|
T Consensus 413 --~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~----------------l~Eti~AH------------- 453 (888)
T KOG0306|consen 413 --GYILASKFVPGDR--------YIVLGTKNGELQVFDLASAS----------------LVETIRAH------------- 453 (888)
T ss_pred --ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhh----------------hhhhhhcc-------------
Confidence 1333444555443 37777899999999853210 00011111
Q ss_pred CCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCc------eee
Q 001621 447 FGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF------KLI 520 (1043)
Q Consensus 447 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l------~~l 520 (1043)
.|..|. + +.+|++..++|||+|.+|++||+.--.- +.+
T Consensus 454 --------------------------------dgaIWs---i-~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 454 --------------------------------DGAIWS---I-SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred --------------------------------ccceee---e-eecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 122222 2 4678899999999999999999753210 001
Q ss_pred eeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEec
Q 001621 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS 600 (1043)
Q Consensus 521 ~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 600 (1043)
...+.. .+++. ..|.|+++|||+++||++-.|.+|+||-+.+-. | ...|-
T Consensus 498 sl~~~r--tLel~---ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK------F-------------------flsLY 547 (888)
T KOG0306|consen 498 SLKHTR--TLELE---DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK------F-------------------FLSLY 547 (888)
T ss_pred eeccce--EEecc---ccEEEEEEcCCCcEEEEEeccCeEEEEEeccee------e-------------------eeeec
Confidence 111111 12222 479999999999999999999999999987632 1 24568
Q ss_pred CCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCC
Q 001621 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNP 680 (1043)
Q Consensus 601 ~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~ 680 (1043)
+|.-||.||.+|||++++++||.|.+|++|-+.=|-|-...+. |...|.++.|-|.
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDSvm~V~F~P~--------------------- 603 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDSVMSVQFLPK--------------------- 603 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc---ccCceeEEEEccc---------------------
Confidence 9999999999999999999999999999999987666433222 5688999999653
Q ss_pred CceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccCCcceeEEeeee
Q 001621 681 AEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEK 760 (1043)
Q Consensus 681 ~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~ 760 (1043)
....|++++|+.|.-||++.-+.++.-. |... ..-| +..
T Consensus 604 -~~~FFt~gKD~kvKqWDg~kFe~iq~L~----------------------------~H~~-------ev~c-----Lav 642 (888)
T KOG0306|consen 604 -THLFFTCGKDGKVKQWDGEKFEEIQKLD----------------------------GHHS-------EVWC-----LAV 642 (888)
T ss_pred -ceeEEEecCcceEEeechhhhhhheeec----------------------------cchh-------eeee-----eEE
Confidence 2448999999999999999877654430 1000 0122 222
Q ss_pred cceeEEEEEEEeeCcEEEEeCCC----hhhhhhhc
Q 001621 761 DEKVCGLLLLFQTGAVQIRSLPD----LELVMESS 791 (1043)
Q Consensus 761 ~~~~~~Lv~~~~dG~i~i~slp~----l~~~~~~~ 791 (1043)
.|+|..+++.+.|..||+|.--+ |++.+|-.
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~E 677 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGE 677 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccCcceeeehhhhhh
Confidence 58899999999999999999876 66555443
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-30 Score=290.52 Aligned_cols=528 Identities=15% Similarity=0.175 Sum_probs=356.4
Q ss_pred eecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 29 ~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
++-+.+.+.|++++.+|+|.+|.+-...|+..+-....-.++..+.-+.+|.+|.|+||| .+++++..+.+++|..-..
T Consensus 49 Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng-~~fav~~gn~lqiw~~P~~ 127 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNG-KFFAVGCGNLLQIWHAPGE 127 (893)
T ss_pred eEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCC-cEEEEEecceeEEEecCcc
Confidence 444567788999999999999999989999988887776666666668899999999995 5777788999999997543
Q ss_pred c--------eeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCe
Q 001621 109 S--------LACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1043)
Q Consensus 109 ~--------~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1043)
. +.+++..+ ..|+++.++.|.+++++|+.|-++++|.++..++ +. +|.+ .+|..+|
T Consensus 128 ~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-~~--~~~l------------~gHkd~V 192 (893)
T KOG0291|consen 128 IKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-LF--TYAL------------NGHKDYV 192 (893)
T ss_pred hhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc-cc--eEec------------cCCCcce
Confidence 2 22333333 6899999999999999999999999999887554 22 1322 3578899
Q ss_pred EEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCcc-----------CCCCC
Q 001621 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS-----------EHQPE 248 (1043)
Q Consensus 180 ~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------~~~~~ 248 (1043)
++..|..+ ...+.+.+.||.+.+|.....-.......++..-.. ......++++-. .-...
T Consensus 193 vacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~------d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 193 VACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD------DEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred EEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccc------cccccccchhhhcceEEEEEEeeeeccc
Confidence 99999885 445999999999999998743111110000000000 000001111100 00011
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCce
Q 001621 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 328 (1043)
Q Consensus 249 ~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~ 328 (1043)
...|+++.|+ +....|++|...|...++.++.-.++.... . ...+|..+.|.+ -|.
T Consensus 265 ~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LS-----------i----s~~~I~t~~~N~--------tGD 320 (893)
T KOG0291|consen 265 SSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLS-----------I----SDQKILTVSFNS--------TGD 320 (893)
T ss_pred ccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEee-----------c----ccceeeEEEecc--------cCC
Confidence 3779999997 999999999999999999998766554211 1 234677776653 122
Q ss_pred EEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccc
Q 001621 329 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 408 (1043)
Q Consensus 329 llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~ 408 (1043)
-++.|+..- ..|-||. |+++...++.+. +-..+..+.-.|+.+ .++....+|.+.+||..+-
T Consensus 321 WiA~g~~kl---gQLlVwe--WqsEsYVlKQQg-----H~~~i~~l~YSpDgq--------~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 321 WIAFGCSKL---GQLLVWE--WQSESYVLKQQG-----HSDRITSLAYSPDGQ--------LIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred EEEEcCCcc---ceEEEEE--eeccceeeeccc-----cccceeeEEECCCCc--------EEEeccCCCcEEEEeccCc
Confidence 344444321 2355554 776433333221 112233333333322 3556678899999997655
Q ss_pred eeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccC------CCCchhhHhHHHHhcccCCCCCccCcccccccCCC
Q 001621 409 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV 482 (1043)
Q Consensus 409 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~ 482 (1043)
.+..++.+ |.+.||.+.|...+. -++++++|+..... .+. ..+.-.
T Consensus 383 fC~vTFte----------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr------NfR------Tft~P~ 434 (893)
T KOG0291|consen 383 FCFVTFTE----------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR------NFR------TFTSPE 434 (893)
T ss_pred eEEEEecc----------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccc------eee------eecCCC
Confidence 45544443 667777777765432 35788889853211 110 011111
Q ss_pred CCCCCccccCCCCcEEEEEeCCC-cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEE
Q 001621 483 PSPVPITKCHSVDRVYLAGYHDG-SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVY 561 (1043)
Q Consensus 483 ~~~~~~~~~s~~~~~l~tg~~Dg-tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~ 561 (1043)
+.+-++.+.-|.|.++++|+.|. -|.+|++++|.+ +.. ++||.+||.+++|+|++..||+|+.|.+||
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDi---------LsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDI---------LSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eeh---------hcCCCCcceeeEEccccCeEEeccccceEE
Confidence 11111225667799999999888 699999999983 222 369999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEe
Q 001621 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1043)
Q Consensus 562 i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~ 641 (1043)
+|++-..... ..--.+...|++++|+|||+-||+++.||.|.+||.+....+..+
T Consensus 504 iW~if~s~~~-------------------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 504 IWDIFSSSGT-------------------------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred EEEeeccCce-------------------------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 9998653211 111346778999999999999999999999999999776554222
Q ss_pred ecCC-----------------CCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCe
Q 001621 642 DDIS-----------------GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1043)
Q Consensus 642 ~~~~-----------------~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~ 704 (1043)
.... ....+.++|+|+.+ +.++++|.+...|++||+.++-+
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----------------------G~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD----------------------GKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCC----------------------CCEEEecCCcccEEEEECchhhe
Confidence 1110 12467889999754 46799999999999999999887
Q ss_pred eecC
Q 001621 705 ISSS 708 (1043)
Q Consensus 705 l~~~ 708 (1043)
+...
T Consensus 617 lkkf 620 (893)
T KOG0291|consen 617 LKKF 620 (893)
T ss_pred eeeE
Confidence 7654
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-28 Score=269.08 Aligned_cols=500 Identities=14% Similarity=0.127 Sum_probs=329.3
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee--E
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--C 112 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l--~ 112 (1043)
+....+..+|.|.-++-.. ...|.+-+.++....... +|..+++...|+|.|-|+++++..|.|+|||......+ .
T Consensus 19 g~~~~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred CcceEeccCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence 4456677899887655543 346767676655443333 45678999999999999999999999999998765433 3
Q ss_pred Eee-cCCCEEEEEEeCCCCEEEEEeCCC--cEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 113 CLK-WESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 113 ~~~-~~~~Vtav~~sp~~~~l~vG~~dG--~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
+++ ..++|..++++++++.+++.++.. -.+++.+|.. ...|...+|...|.++.|-|...
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG-----------------~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG-----------------NSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC-----------------CccceeeccceeEeeeeccCCCc
Confidence 333 458999999999999887665532 1233333331 11222346788999999999744
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
- |++++++|++|.+|+--.-+....+ ..|.+-|.|+.|+ |||.+++|++
T Consensus 161 f-Ri~T~sdDn~v~ffeGPPFKFk~s~-----------------------------r~HskFV~~VRys-PDG~~Fat~g 209 (603)
T KOG0318|consen 161 F-RIATGSDDNTVAFFEGPPFKFKSSF-----------------------------REHSKFVNCVRYS-PDGSRFATAG 209 (603)
T ss_pred e-EEEeccCCCeEEEeeCCCeeeeecc-----------------------------cccccceeeEEEC-CCCCeEEEec
Confidence 4 6999999999998873322222111 1247899999996 9999999999
Q ss_pred cCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001621 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~ 349 (1043)
.||.|.++|=.+++......+ ...|...|+.+.| +|+..+++-++++ ....+|+..
T Consensus 210 sDgki~iyDGktge~vg~l~~------------~~aHkGsIfalsW-------sPDs~~~~T~SaD-----kt~KIWdVs 265 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELED------------SDAHKGSIFALSW-------SPDSTQFLTVSAD-----KTIKIWDVS 265 (603)
T ss_pred CCccEEEEcCCCccEEEEecC------------CCCccccEEEEEE-------CCCCceEEEecCC-----ceEEEEEee
Confidence 999999999988876543221 1125668999999 5667777755554 578888764
Q ss_pred cccccccceeeeeEeecCCCceeEEEEeecCCCCCCCC-ccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCc
Q 001621 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH-KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 428 (1043)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~-~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 428 (1043)
-.. +...++ ....+.|+.+ |+-- ...++.++.+|.+-.++... ...+.
T Consensus 266 ~~s------lv~t~~--~~~~v~dqqv-------G~lWqkd~lItVSl~G~in~ln~~d----------------~~~~~ 314 (603)
T KOG0318|consen 266 TNS------LVSTWP--MGSTVEDQQV-------GCLWQKDHLITVSLSGTINYLNPSD----------------PSVLK 314 (603)
T ss_pred ccc------eEEEee--cCCchhceEE-------EEEEeCCeEEEEEcCcEEEEecccC----------------CChhh
Confidence 221 222222 2233434332 1110 11356666777777655321 12344
Q ss_pred ccCCCCCcceEEEEEeccC------CCCchhhHhHHHHhcccCCCCCccCcccccc--cCCCCCCCCccccCCCCcEEEE
Q 001621 429 VIPISDPIMTVAEFMLLPF------GGHSSKGLSEIATFTKLHSSHTQAGHIKWPL--SGGVPSPVPITKCHSVDRVYLA 500 (1043)
Q Consensus 429 ~l~~~~~~it~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl--~Gg~~~~~~~~~~s~~~~~l~t 500 (1043)
.+..|...||++...++.+ .++.+..|+. ++. ..-++ ++|...+..+ ..+ ...-|+|
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~----~~g---------~~~~~~g~~h~nqI~~~-~~~-~~~~~~t 379 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS----GSG---------TSDRLAGKGHTNQIKGM-AAS-ESGELFT 379 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeeccCceEEEEec----CCc---------cccccccccccceEEEE-eec-CCCcEEE
Confidence 5667888999998876542 2344445552 111 00112 2333333333 222 2246888
Q ss_pred EeCCCcEEEEeCCCCCce------------eeeeeccc-e------eeE-Eec--------CCCCCeEEEEEecCCCeEE
Q 001621 501 GYHDGSVRIWDATYPVFK------------LICALDAE-V------QGI-EVA--------GSRAPVSTLSFCFINSSLA 552 (1043)
Q Consensus 501 g~~DgtVriWD~~~~~l~------------~l~~l~~~-~------~~v-~~~--------~~~~~V~~l~fspd~~~La 552 (1043)
.+.|.++|+-++..+... .+...... . .++ .+. .-...+++++++|++.++|
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 888999999987544311 11111110 0 011 011 1234678999999999999
Q ss_pred EEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 553 ~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
+|+.||.|+||.+...... ....+..|.++||+|+|||||.+||+|...+.|.+||+
T Consensus 460 VGG~Dgkvhvysl~g~~l~-----------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELK-----------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred EecccceEEEEEecCCccc-----------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 9999999999999763211 01235679999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 633 NLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
.+..+. + ....+|.+.|.+++|+|.. ..+++|+.|-+|.+|+...
T Consensus 517 ~s~~~~-~-~~w~FHtakI~~~aWsP~n----------------------~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 517 ASREVK-T-NRWAFHTAKINCVAWSPNN----------------------KLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ccCcee-c-ceeeeeeeeEEEEEeCCCc----------------------eEEEeccccceEEEEEccC
Confidence 987762 2 2223477999999998654 4599999999999999654
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=281.21 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=233.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCC
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISG--SHFMYIGDENGLMSVIKYDADEG 151 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~ 151 (1043)
...||..+.|+.|+..|++++.+|.++||+..+...+.++..| +.|.++.|.|. +..|++++.||++++|+++.+..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 4569999999999999999999999999999999999999877 89999999998 55899999999999999987521
Q ss_pred eEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC
Q 001621 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1043)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1043)
+. ...+|...|..|+|||. |++|++++-|.+-+|||+.++..+...++
T Consensus 254 -l~----------------~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEG------------- 301 (459)
T KOG0272|consen 254 -LQ----------------DLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEG------------- 301 (459)
T ss_pred -hh----------------hhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcc-------------
Confidence 11 11357789999999994 99999999999999999998876543332
Q ss_pred CCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceE
Q 001621 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1043)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~ 311 (1043)
|...|.+++|. |||+.++||+-|..-++||+.+|+++.-
T Consensus 302 ----------------Hs~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~im~------------------------ 340 (459)
T KOG0272|consen 302 ----------------HSKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRCIMF------------------------ 340 (459)
T ss_pred ----------------cccccceeEec-CCCceeeccCccchhheeecccCcEEEE------------------------
Confidence 48899999997 9999999999999999999977643210
Q ss_pred EEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEE
Q 001621 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1043)
Q Consensus 312 ~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l 391 (1043)
+ .|
T Consensus 341 -L------------------~g---------------------------------------------------------- 343 (459)
T KOG0272|consen 341 -L------------------AG---------------------------------------------------------- 343 (459)
T ss_pred -e------------------cc----------------------------------------------------------
Confidence 0 00
Q ss_pred EEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCcc
Q 001621 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1043)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 471 (1043)
|...|-
T Consensus 344 -----------------------------------------H~k~I~--------------------------------- 349 (459)
T KOG0272|consen 344 -----------------------------------------HIKEIL--------------------------------- 349 (459)
T ss_pred -----------------------------------------ccccee---------------------------------
Confidence 000000
Q ss_pred CcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEec-CCCe
Q 001621 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSS 550 (1043)
Q Consensus 472 ~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fsp-d~~~ 550 (1043)
.+ .|+|+|..+|||+.|+++||||+.... .++++ .+|+.-|+.|.|+| .|.+
T Consensus 350 ---------------~V-~fsPNGy~lATgs~Dnt~kVWDLR~r~--~ly~i---------pAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 350 ---------------SV-AFSPNGYHLATGSSDNTCKVWDLRMRS--ELYTI---------PAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ---------------eE-eECCCceEEeecCCCCcEEEeeecccc--cceec---------ccccchhhheEecccCCeE
Confidence 02 578889999999999999999998766 24443 48999999999999 6889
Q ss_pred EEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEE
Q 001621 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1043)
Q Consensus 551 La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vw 630 (1043)
|++++.|++|+||.-.+. ++...+.+|.+.|-++.+|+||.++++++.|.++++|
T Consensus 403 L~TasyD~t~kiWs~~~~-------------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTW-------------------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred EEEcccCcceeeecCCCc-------------------------ccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 999999999999986543 3345678999999999999999999999999999999
Q ss_pred E
Q 001621 631 D 631 (1043)
Q Consensus 631 D 631 (1043)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 4
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-27 Score=265.57 Aligned_cols=592 Identities=15% Similarity=0.158 Sum_probs=375.8
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceE---EEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEE
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNIT 121 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~---~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vt 121 (1043)
.|+++|+-. --.|.+||...++. +.....+..|++++-++|.-.|+.+.+||.|++||+.++..+.++.+| ..|+
T Consensus 33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVSA-LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEec-cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 478887722 23799999877632 223334568999999999877888999999999999999988888876 7899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCe
Q 001621 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1043)
Q Consensus 122 av~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~ 201 (1043)
++.|+..|..+++|+.|+.|-||++-.+.+.+. + ++|...|+...|... .+.+++.+.|+.
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-----L------------~GHkd~iT~~~F~~~--~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-----L------------RGHKDSITQALFLNG--DSFLVSVSKDSM 172 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceeeEE-----e------------ecchHHHhHHhccCC--CeEEEEeccCce
Confidence 999999999999999999999999877655433 2 256677888888763 446888999999
Q ss_pred EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 202 I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
|++||+.+..+..+... |...|.++++. + ..+++++.|+.+++|++..
T Consensus 173 iK~WdL~tqhCf~Thvd-----------------------------~r~Eiw~l~~~-~--~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVD-----------------------------HRGEIWALVLD-E--KLLVTAGTDSELKVWELAF 220 (888)
T ss_pred EEEEecccceeeeEEec-----------------------------ccceEEEEEEe-c--ceEEEEecCCceEEEEeec
Confidence 99999999887654321 37889999986 4 7899999999999999933
Q ss_pred CCcccc--ccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccc------
Q 001621 282 TASTKG--QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG------ 353 (1043)
Q Consensus 282 g~~~~~--~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~------ 353 (1043)
..-... +.. .....-.+.-.+ ..-++..+ . + .+.+++++-|.+ ..+.++.+.-..+
T Consensus 221 ~~D~~~~~~~~-s~~~~G~~~rqs--k~R~i~l~---~-----d-~s~r~~~c~g~d----~~~e~frI~s~~E~~k~l~ 284 (888)
T KOG0306|consen 221 EDDEKETNRYI-STKLRGTFIRQS--KGREINLV---T-----D-FSDRFLVCQGAD----KVIELFRIRSKEEIAKILS 284 (888)
T ss_pred ccccccccccc-eeeccceeeecc--CCceeEEe---e-----c-CcccEEEEecch----hhhhheeecCHHHHHHHHH
Confidence 221110 000 000000000000 11123222 1 2 244566665544 2333332221100
Q ss_pred ------------------cc-----cceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeeccccee
Q 001621 354 ------------------ME-----NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 410 (1043)
Q Consensus 354 ------------------~~-----~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~ 410 (1043)
.+ -+.+...+. ....+.++..+|..+ -+. .+++..+..+..|...
T Consensus 285 Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir--~~~kiks~dv~~~~~-----~~~-~lv~l~nNtv~~ysl~---- 352 (888)
T KOG0306|consen 285 KKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR--TSAKIKSFDVTPSGG-----TEN-TLVLLANNTVEWYSLE---- 352 (888)
T ss_pred HHHHHhhhhccccccccchhhhHHHHHHHHHhee--chhheeEEEEEecCC-----cce-eEEEeecCceEEEEec----
Confidence 00 000000111 123456666666542 122 3333445555544321
Q ss_pred ecccCCCCCCCCC-ccCCcccCCCCCcceEEEEEeccC-----CCCchhhHhHHHHhcccCCCCCccCcccccccCCCCC
Q 001621 411 LLSQQEKKPSVCP-VEFPGVIPISDPIMTVAEFMLLPF-----GGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1043)
Q Consensus 411 ~l~~~~~~~~~~~-~~~~~~l~~~~~~it~~~~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~ 484 (1043)
... ...+.+ ........+|+..|.++.++.+.. .+..+++|+... .++ +.. +..+.
T Consensus 353 ---~s~-~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t----~kc--iRT------i~~~y-- 414 (888)
T KOG0306|consen 353 ---NSG-KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDT----LKC--IRT------ITCGY-- 414 (888)
T ss_pred ---cCC-CCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccC----cce--eEE------ecccc--
Confidence 111 111222 223346677888888888775431 234567777421 111 000 11111
Q ss_pred CCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEE
Q 001621 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 485 ~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~ 564 (1043)
.. ...|-|..+++++|...|.+.++|+.+..+. .. ...|.++|.+|+.+||++.+++|+.|.+|++||
T Consensus 415 ~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~--Et---------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 415 IL-ASKFVPGDRYIVLGTKNGELQVFDLASASLV--ET---------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred EE-EEEecCCCceEEEeccCCceEEEEeehhhhh--hh---------hhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 00 1157789999999999999999999887621 11 237899999999999999999999999999999
Q ss_pred ecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecC
Q 001621 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1043)
Q Consensus 565 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~ 644 (1043)
|.--... +.+...+-.+.+ .........|.|+++||||++||+|=-|.+|+||-+.+-+.-.. +
T Consensus 483 f~l~~~~------~gt~~k~lsl~~-------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls--L- 546 (888)
T KOG0306|consen 483 FKLVVSV------PGTQKKVLSLKH-------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS--L- 546 (888)
T ss_pred EEEEecc------Ccccceeeeecc-------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee--e-
Confidence 9642110 011111111111 01123567899999999999999999999999999997654332 2
Q ss_pred CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEe
Q 001621 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI 724 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~ 724 (1043)
.+|.=||.++..|++ +..|++|+.|.+|.+|...=|++-.+. +
T Consensus 547 YGHkLPV~smDIS~D----------------------SklivTgSADKnVKiWGLdFGDCHKS~-f-------------- 589 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPD----------------------SKLIVTGSADKNVKIWGLDFGDCHKSF-F-------------- 589 (888)
T ss_pred cccccceeEEeccCC----------------------cCeEEeccCCCceEEeccccchhhhhh-h--------------
Confidence 357789999999744 466999999999999999988874443 1
Q ss_pred ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhhhhcccceeeeec--cC
Q 001621 725 DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNF--KA 802 (1043)
Q Consensus 725 ~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~~~~~~~--~~ 802 (1043)
.|-..+-.+.+-|+...+.+.++||.|+=|+--.++.+....-|-.=-|-. .+
T Consensus 590 -------------------------AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 590 -------------------------AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred -------------------------cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 111111112223566678889999999999988888776442221111221 56
Q ss_pred CCceeeEec-CCcEEEEcc-ceeEE
Q 001621 803 NMDKTISAD-NGQITLANG-SEVAF 825 (1043)
Q Consensus 803 ~~~~~i~~s-dg~~~l~~g-~e~~~ 825 (1043)
+|.-.+++| |-.+-||-- .|+.+
T Consensus 645 ~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 645 NGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred CCCeEEeccCCceeEeeeccCccee
Confidence 666666666 777777765 66544
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=274.87 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=177.1
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d--~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
.|-...++.+.|+.++..||+|+++|.++||..++...+..+ .|...|.++.|+|. +..|++++.||++++|++++-
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 577788999999999999999999999999999877666554 36789999999997 568999999999999999999
Q ss_pred ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
.++..+.+| ..|..++|.|+|++|.+++-|.+-++|++.+....+ ...+|...|.+++|+|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-----------------~QEGHs~~v~~iaf~~- 313 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-----------------LQEGHSKGVFSIAFQP- 313 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-----------------hhcccccccceeEecC-
Confidence 999999876 789999999999999999999999999987642211 2357889999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
||..+++|+-|..-+|||+++++.+..+.+ |.++|.++.|+ |+|.+|||
T Consensus 314 -DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-----------------------------H~k~I~~V~fs-PNGy~lAT 362 (459)
T KOG0272|consen 314 -DGSLAATGGLDSLGRVWDLRTGRCIMFLAG-----------------------------HIKEILSVAFS-PNGYHLAT 362 (459)
T ss_pred -CCceeeccCccchhheeecccCcEEEEecc-----------------------------cccceeeEeEC-CCceEEee
Confidence 599888999999999999999999988865 37899999996 99999999
Q ss_pred EEcCCcEEEEcCC
Q 001621 268 GYIDGDILLWNTS 280 (1043)
Q Consensus 268 g~~DG~I~iWd~~ 280 (1043)
|+.|+++++||+.
T Consensus 363 gs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 363 GSSDNTCKVWDLR 375 (459)
T ss_pred cCCCCcEEEeeec
Confidence 9999999999984
No 13
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-27 Score=298.50 Aligned_cols=859 Identities=19% Similarity=0.159 Sum_probs=421.4
Q ss_pred cCCccCCCCccCccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCC--CeEEEEEecCCC
Q 001621 12 HNSQHGSLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQG 89 (1043)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~--~V~~l~Fs~d~~ 89 (1043)
+.+.+..+..++|+++..+++|+|+....+||||.+++||+|+.+|.|++|+..+++....++... .+..+.|.....
T Consensus 12 ~~~~~~~~~~~~f~~~~~~~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s 91 (993)
T KOG1983|consen 12 KNPPRERLKNDLFAFDKTNRHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGIS 91 (993)
T ss_pred CCCccccccchhcccccceecCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeeccc
Confidence 335668899999999999999999999999999999999999999999999999999988877655 555666666556
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccccc
Q 001621 90 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1043)
Q Consensus 90 ~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1043)
...+...++.+.+|....... ....+.+++++..+--.+ +.| .++.+.+++.... .+.. +.+... ....
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~--~~~~--~~~~~~--~~~~ 160 (993)
T KOG1983|consen 92 RNLVLSDDDSLHLWSIKIKTG---VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH--QLSD--LKYAGT--ESSN 160 (993)
T ss_pred ccceeecccceeeecccccce---eecCCcceeccCCCCcch-hcc-cCceeeEeeechh--hhcc--ceeccc--cccc
Confidence 667777778888887644332 233466788887777777 777 8888877765431 1111 111000 0000
Q ss_pred CCCCCCCCCeEEEEecCCCCCC----------------------------EEEEEECCCeEEEEEccCCeEEEEeCCccc
Q 001621 170 GFPLLSHQPVVGVLPHPNSSGN----------------------------RVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1043)
Q Consensus 170 ~~~~~~~~~V~sl~~sp~d~g~----------------------------~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~ 221 (1043)
..+.........+.+.+.+.+. ..+.++.-+.+.+|+.........
T Consensus 161 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 234 (993)
T KOG1983|consen 161 FVPYESLSPTLSIEGLVIDLDTVLISLPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSA------ 234 (993)
T ss_pred cceeeeeccceeeeccccccccceeecccccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhh------
Confidence 0000001112222222221111 133344444444444322211111
Q ss_pred ccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCC---CCCcce-
Q 001621 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTG---SRNNVV- 297 (1043)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~---~~~~i~- 297 (1043)
-.+....+. +++..+++++.||++.+||...+..+..+.-. ...+..
T Consensus 235 ----------------------------~~~~~~~~~-~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~~~~~~~~~~~~~p 285 (993)
T KOG1983|consen 235 ----------------------------YLPNGQLES-RDGSHFVSYHTDGSYAFWDVSSGKLQIARNPVPLVSLVPYGP 285 (993)
T ss_pred ----------------------------cccccccCc-cCCceEEEEEecCCEEeeecCCCceeecCccccccccCCCCh
Confidence 011111123 78999999999999999999998763322100 000000
Q ss_pred -eeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEE
Q 001621 298 -KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMIL 376 (1043)
Q Consensus 298 -~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 376 (1043)
+..-.............|.|.. ++..+.+. ..+++++...+..+ ...+ ...+..+..
T Consensus 286 ~~~~~~~~~~~~~s~~~~~~~~~---~~~~~~~~--------~~~~v~~~~~~~~~---------~~~~--~~~~~~~~~ 343 (993)
T KOG1983|consen 286 CKQINRILTELPRSGKPFWICQG---GMPRGSYG--------DRHCVSVEHDGTQV---------KLDF--TSSVIGLVG 343 (993)
T ss_pred hhhhcccccccccccCcEEEecC---CCccceec--------ccceeEeecCCcee---------EEEE--Eecccceee
Confidence 0000000000111122333322 11111111 11233332111000 0000 001111111
Q ss_pred eecCCC--CCCCCccEEEEE---cCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCc
Q 001621 377 LSSAGA--TVGNHKADLFVL---TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHS 451 (1043)
Q Consensus 377 ~p~~s~--~g~~~~~~l~vl---~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~ 451 (1043)
.....+ ....++...+.+ .....+..+. ++....+....-|.+.|++..+...-..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~s~~~~~~~~~~~~~I~~~~~~~~~~~--- 404 (993)
T KOG1983|consen 344 VTSEDPMSNFDANPNLVVLLEEELVPPDLQTLG----------------IPSVSPPYLGSHHKSAITCLSLDGEVPT--- 404 (993)
T ss_pred eecccccCccccCccceeccccccChhhhhccC----------------CCcccchhccccCcceeeccccCCCccc---
Confidence 111000 011111112111 1111222222 1222333333334455665554321110
Q ss_pred hhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeE-
Q 001621 452 SKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGI- 530 (1043)
Q Consensus 452 ~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v- 530 (1043)
..|..-..++..+..+. .....||..++.... .-.+.-.+..+++.|+.+++||.....+..++.++......
T Consensus 405 -~~~~~~~~~~~~~~~~~-~~~~s~~~v~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~s~~~~~~~~~~~~~~t 478 (993)
T KOG1983|consen 405 -MLYPSGLAAGNAQSVPP-VSALSWPIVGGRLLQ----SAPKLLEIGLTGHEDSTVSFLDAGGPSLRPLYKLDTRSAFLT 478 (993)
T ss_pred -cccccccccccccCCCc-hhccccceeeceecc----cCccceeecccccccceeeEEeccccccchhhhhcccccccc
Confidence 11221111111111010 033445555544321 23345557778899999999998877766655554321100
Q ss_pred ------EecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeecc------------C------------
Q 001621 531 ------EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE------------T------------ 580 (1043)
Q Consensus 531 ------~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~------------~------------ 580 (1043)
........+..+.+++-...+++++..|.+....+......+...+... .
T Consensus 479 ~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 558 (993)
T KOG1983|consen 479 DGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSIVTGAVSFFCADLNQDVSVFKWKGHDRLSPRSNPLS 558 (993)
T ss_pred CCcCCcccccccccCCcchhcccccccccccccceeeeeeecccccccceeeeehhhhhccccccccCchhccccccccC
Confidence 0012223566677888888888888888887777765433332222210 0
Q ss_pred ----CCceeeecC--CCcceeeE---EecC-CCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC---CC
Q 001621 581 ----KSEVHALPE--GKISLCRA---VFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS---GS 647 (1043)
Q Consensus 581 ----~~~~~~~~~--~~~~~~~~---~l~~-h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~---~~ 647 (1043)
..-+..+.. ..+..+.. .... -.+.+..+..+ +=..+..++.++...+-+.+....++...... ..
T Consensus 559 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~g~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~r 637 (993)
T KOG1983|consen 559 LPDGFQPFVDVQDRPPAGVTQGTLASGWILVKEGTVSGIGLS-DIPSVNVCTLDPNLILGDERGLSRVKNLKKSLRLSFR 637 (993)
T ss_pred CCCccccceEEEecCCcceeeeccccceeccccceeeeeecc-ccceeeeccCCccceeccCCCceeEeeccCchhhhhc
Confidence 000001100 00000000 0011 12223333333 32468888999988888888887776654421 11
Q ss_pred CCCeEEEEEEee--cCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEc--CCCCCe----------------e--
Q 001621 648 SSPIISMTWTEF--KNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG--GSSENM----------------I-- 705 (1043)
Q Consensus 648 ~~~V~sl~fs~~--~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d--~~~g~~----------------l-- 705 (1043)
......+.+... +.+.. ..+..+.++.-|....+. +.++.. +
T Consensus 638 ~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~s~~~~~~~~~~~ 701 (993)
T KOG1983|consen 638 SIRPSRVSLTGSEYGLDGV----------------SSILPVEGTDRGELIGFKILPVSRGRFSAKAEDSLVNITSSLYSA 701 (993)
T ss_pred cCCCceEecccceeccCch----------------hhhhhcchhhccccccceeccccccccccccccCCCccccchhhh
Confidence 122222222211 11110 001111122211111110 000000 0
Q ss_pred -------ecC-CCCcCCCceeEEEEEe----ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEee
Q 001621 706 -------SSS-PWHLKKKVIAISMEVI----DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQT 773 (1043)
Q Consensus 706 -------~~~-~~~~~~~~~a~~~~v~----~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~d 773 (1043)
+.. +++......++..+++ +.+++|++.+..++...-.+..++...+++..+ ..+...|+|...+
T Consensus 702 ~~~~~~~s~~~s~~~~~~~~~~~~~~~i~~e~~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i---~~~~~~l~~~~~~ 778 (993)
T KOG1983|consen 702 ITLASDSSISSSLQGISYALAIEVPTLICGESAIRVFSVPAQQCKELQLIHEAPVVGISVLDGI---SKPEPSLDLLDAN 778 (993)
T ss_pred cchhhccCccccccccccccccccceEEecCCccceecccccccccceeeccccceeeeeeecc---cCccceeeEeecC
Confidence 000 1222222222222222 889999997733333333333444455555544 2337899999999
Q ss_pred CcEEEEeCCChhhhhhhcccceeeeeccCCCcee-eEec-CCcEEEEccceeEEEEeccCCCcccccCCCchhhhhhhhH
Q 001621 774 GAVQIRSLPDLELVMESSLMSILRWNFKANMDKT-ISAD-NGQITLANGSEVAFVNLLAGENEFSILESSPCLHDKVLEA 851 (1043)
Q Consensus 774 G~i~i~slp~l~~~~~~~l~~~~~~~~~~~~~~~-i~~s-dg~~~l~~g~e~~~~s~l~~~~~~~~~~s~~~~~~k~~~~ 851 (1043)
|.|.+++||+|+++....+.--+.|.+..++... -+++ .++..+... . .+-.....+...|....+-
T Consensus 779 g~i~~~slp~Lre~~~~v~~lp~~~~~i~~~~~~~~g~~~~~~~~~~~s------~---~~~~k~~~~~~~~~~~~~~-- 847 (993)
T KOG1983|consen 779 GHISKHSLPSLREEQFKVLPLPLVKNIIKNKLTAGNGFSVHKVGELAAS------A---VERSKKTLEQELQELTNLG-- 847 (993)
T ss_pred CCccceecchhhhhhccccCCcchhhhcccchhccccccccchhheecc------h---hhhhhcccccccccccccc--
Confidence 9999999999999875555444455544444332 1223 332222211 0 0000011111111000000
Q ss_pred HhhhccccCcchhccccccCccccceecc-cccccccccCCCCCCCcCchhhhccccCCCCCCCCCCCCCCCcccccccc
Q 001621 852 AAAAAFNVSSNQKKKQTTAAGILGGIVKG-FRGEKMIHTLDDSIDPKSSFSQLGGIFSRPPFPDLSPAATNNEEIELNID 930 (1043)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~l~i~ 930 (1043)
-+...+....+-+.+..-+-.+++|| +.++....+. -+..||..+
T Consensus 848 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~g~~~~~~-------------------------------~~i~~l~~e 893 (993)
T KOG1983|consen 848 ---DISVLGLPLLKLEIPYAPIRQSDIKGVLFFGTVGCDP-------------------------------YKISELEGE 893 (993)
T ss_pred ---ccccccccccchhhhhhhhhccccccccccCcCCCCh-------------------------------hhhcccccc
Confidence 00001112222222222222223333 2222211111 126779999
Q ss_pred cccCCCCCCCCcCCccccccccchhhhhhhhhcCCCCCCCCCCCcHHHHHHHhccCCChhH--HHHHHHHHHHHHHHHhh
Q 001621 931 DIEIDEPPSMMATSSHEVTNTKKEKLSERERLLGVPDDAKPRLRTREEIIAKYRKAEDASS--VAAHARDKLFERQDKLE 1008 (1043)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~ 1008 (1043)
+|.++.+.+..+..+....+ ++ ...+.....+.+..+|+++++.++ .+.+|+++|+||+|||+
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~l~e~~erL~ 958 (993)
T KOG1983|consen 894 RISLATKYEVVPISSGDVSS-RS--------------SARAILGPPDGEEPKYAQASGVSSGSAASGALQPLNERGERLS 958 (993)
T ss_pred cccccccceeeccccccCCc-cc--------------ccccccCCCcccchhhcccccccccchhhhcchhhHhhccccc
Confidence 99999988777755543222 11 122334445556778888887765 99999999999999999
Q ss_pred hhhHhHHHHHhchhhHHHHHHHHHHHhhccccccC
Q 001621 1009 RISRCTEELQSGAEDFASLANELVKTMENRKWWKI 1043 (1043)
Q Consensus 1009 ~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~~ 1043 (1043)
++++||++|+++|++|+++|+|++.+++.||||||
T Consensus 959 ~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~~~f 993 (993)
T KOG1983|consen 959 RLEERTAEMANSAKQFSSTAHELTGKYKVKKWYDF 993 (993)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhccC
Confidence 99999999999999999999999999999999997
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=242.31 Aligned_cols=288 Identities=12% Similarity=0.169 Sum_probs=230.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
|.+.|.++.|++|+++||+++.||.+.|||.-|...++.++.+ .-|-.++|+|.+++++.|+-|....|+.+..++..-
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 5678999999999999999999999999999999989888866 679999999999999999999988888877542111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
.. ++ .....+|.+-+.++.|-+ |++ |++++.|.+..+||+++++.+..|.+
T Consensus 134 ~~---~v--------~r~l~gHtgylScC~f~d--D~~-ilT~SGD~TCalWDie~g~~~~~f~G--------------- 184 (343)
T KOG0286|consen 134 NV---RV--------SRELAGHTGYLSCCRFLD--DNH-ILTGSGDMTCALWDIETGQQTQVFHG--------------- 184 (343)
T ss_pred cc---ee--------eeeecCccceeEEEEEcC--CCc-eEecCCCceEEEEEcccceEEEEecC---------------
Confidence 10 00 001246788899999987 464 99999999999999999999988755
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecC-CCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEE
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp-~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~ 312 (1043)
|...|.++.+. | +++.+++|+-|+..++||+..+...+.
T Consensus 185 --------------H~gDV~slsl~-p~~~ntFvSg~cD~~aklWD~R~~~c~qt------------------------- 224 (343)
T KOG0286|consen 185 --------------HTGDVMSLSLS-PSDGNTFVSGGCDKSAKLWDVRSGQCVQT------------------------- 224 (343)
T ss_pred --------------CcccEEEEecC-CCCCCeEEecccccceeeeeccCcceeEe-------------------------
Confidence 37789999996 8 999999999999999999865421110
Q ss_pred EEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEE
Q 001621 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1043)
Q Consensus 313 l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~ 392 (1043)
+
T Consensus 225 F------------------------------------------------------------------------------- 225 (343)
T KOG0286|consen 225 F------------------------------------------------------------------------------- 225 (343)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccC
Q 001621 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1043)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 472 (1043)
+.|++.|++
T Consensus 226 --------------------------------------~ghesDINs--------------------------------- 234 (343)
T KOG0286|consen 226 --------------------------------------EGHESDINS--------------------------------- 234 (343)
T ss_pred --------------------------------------cccccccce---------------------------------
Confidence 001111211
Q ss_pred cccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEE
Q 001621 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1043)
Q Consensus 473 ~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La 552 (1043)
+ +|.|+|.-++||++|++.|++|+.... .+..++.. .-..+|++|+||-.|++|.
T Consensus 235 ---------------v-~ffP~G~afatGSDD~tcRlyDlRaD~--~~a~ys~~-------~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 235 ---------------V-RFFPSGDAFATGSDDATCRLYDLRADQ--ELAVYSHD-------SIICGITSVAFSKSGRLLF 289 (343)
T ss_pred ---------------E-EEccCCCeeeecCCCceeEEEeecCCc--EEeeeccC-------cccCCceeEEEcccccEEE
Confidence 2 466788899999999999999999876 23333221 2235899999999999999
Q ss_pred EEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001621 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1043)
Q Consensus 553 ~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD 631 (1043)
+|..|..+.|||.-..... ..|.+|..+|+||..+|||..||+||+|.+++||.
T Consensus 290 agy~d~~c~vWDtlk~e~v-------------------------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGERV-------------------------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeecCCceeEeeccccceE-------------------------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999998654321 34689999999999999999999999999999994
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=3.3e-26 Score=240.72 Aligned_cols=343 Identities=14% Similarity=0.154 Sum_probs=261.0
Q ss_pred cceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001621 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1043)
Q Consensus 25 ~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vW 103 (1043)
|-..+...+|...|.+++.+|+..++|+|+.|-.-+||+..+.+...++. |+.+|+++.|+.++.+|++++-+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 44556667899999999999999999999999999999998888777665 68899999999999999999999999999
Q ss_pred ECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEE
Q 001621 104 SLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1043)
Q Consensus 104 dl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl 182 (1043)
...+|.....+..+ ..|.=+.+.|.+..|+.|+.||++-+|.++.. ... + .-.+|..++++=
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~------------k---v~~Gh~~~ct~G 196 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALC------------K---VMSGHNSPCTCG 196 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--cee------------e---EecCCCCCcccc
Confidence 99999988888643 67778899999999999999998866655442 111 1 113578899999
Q ss_pred EecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC
Q 001621 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1043)
Q Consensus 183 ~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g 262 (1043)
.|.|+ |++++++|.||+|++||..+++++...... +..+..++.++ .++
T Consensus 197 ~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~----------------------------e~~~~~~~~~~-~~~ 245 (399)
T KOG0296|consen 197 EFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQA----------------------------EGLELPCISLN-LAG 245 (399)
T ss_pred cccCC--CceEEEEecCceEEEEecCCCceeEEeccc----------------------------ccCcCCccccc-ccc
Confidence 99994 999999999999999999999988776431 12334566665 778
Q ss_pred CEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcce
Q 001621 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1043)
Q Consensus 263 ~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ 342 (1043)
..+++|..++.+.+-+..+|+.+. |. ++.
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~------------------------------~~----n~~----------------- 274 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVN------------------------------CN----NGT----------------- 274 (399)
T ss_pred ceeEeccCCccEEEEccccceEEE------------------------------ec----CCC-----------------
Confidence 888888888877665543332100 00 000
Q ss_pred EEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCC
Q 001621 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1043)
Q Consensus 343 ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~ 422 (1043)
T Consensus 275 -------------------------------------------------------------------------------- 274 (399)
T KOG0296|consen 275 -------------------------------------------------------------------------------- 274 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEe
Q 001621 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1043)
Q Consensus 423 ~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~ 502 (1043)
.|...+.+...+.++.+++ ++..=.+.|+|+
T Consensus 275 ---~~~l~~~~e~~~esve~~~----------------------------------------------~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 275 ---VPELKPSQEELDESVESIP----------------------------------------------SSSKLPLAACGS 305 (399)
T ss_pred ---Cccccccchhhhhhhhhcc----------------------------------------------cccccchhhccc
Confidence 0000000111111111111 111112678899
Q ss_pred CCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCC
Q 001621 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1043)
Q Consensus 503 ~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~ 582 (1043)
-||+|-|||.....++.++ .|..+|+.+.|-+ +.+|+++..+|.||.||.++++
T Consensus 306 vdG~i~iyD~a~~~~R~~c------------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~------------- 359 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTLRHIC------------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ------------- 359 (399)
T ss_pred ccceEEEEecccchhheec------------cCCCceEEEEEcC-cchheeeccCceEEeeeccccc-------------
Confidence 9999999999987765443 3446899999999 8899999999999999998753
Q ss_pred ceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001621 583 EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1043)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~ 633 (1043)
+...+.+|+.+|.+++++|+.++|+++|.|++.+||++.
T Consensus 360 ------------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 ------------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ------------eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 234678999999999999999999999999999999875
No 16
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.8e-24 Score=235.02 Aligned_cols=497 Identities=16% Similarity=0.179 Sum_probs=317.9
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCc--------EEEEcCCCceEEEecC-CCCCeEEEEEec-CC-CEEEEEE--CCC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGR--------IKVIGGDGIEGLLISP-SQLPYKNLEFLQ-NQ-GFLISIT--NDN 98 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~--------I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~-d~-~~Lvs~s--~d~ 98 (1043)
.||+..|.|++.+|+--++|+|...|+ |++||.....-+..+. ....|.+++|++ ++ .+|...+ .+.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 489999999999999999999887774 8999966555444443 245799999998 33 4555554 345
Q ss_pred cEEEEECCCCceeEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCC
Q 001621 99 EIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1043)
.+.|||...+..+.... ....|-...|.|.+..+.+....|.+..|.+.. +.+.. + +.. +......
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k---~------~~~--fek~ekk 247 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVK---R------QGI--FEKREKK 247 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEE---E------eec--cccccce
Confidence 68999999988777665 446788899999999999999999998886554 33331 0 000 1111236
Q ss_pred CeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEE
Q 001621 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w 257 (1043)
.|.|++|.++ |. +++|.++|.|.||+....+..+.. ++ |++.|.++|-
T Consensus 248 ~Vl~v~F~en--gd-viTgDS~G~i~Iw~~~~~~~~k~~---------~a--------------------H~ggv~~L~~ 295 (626)
T KOG2106|consen 248 FVLCVTFLEN--GD-VITGDSGGNILIWSKGTNRISKQV---------HA--------------------HDGGVFSLCM 295 (626)
T ss_pred EEEEEEEcCC--CC-EEeecCCceEEEEeCCCceEEeEe---------ee--------------------cCCceEEEEE
Confidence 7999999994 76 999999999999999777665432 11 4788999999
Q ss_pred ecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCC
Q 001621 258 ASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1043)
Q Consensus 258 ~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~ 337 (1043)
. .+|. |++|+.|..|..|| ..-+.+ ..+++ .+...+|+.+ .+..+.++|-.
T Consensus 296 l-r~Gt-llSGgKDRki~~Wd-~~y~k~-----------r~~el--Pe~~G~iRtv---------~e~~~di~vGT---- 346 (626)
T KOG2106|consen 296 L-RDGT-LLSGGKDRKIILWD-DNYRKL-----------RETEL--PEQFGPIRTV---------AEGKGDILVGT---- 346 (626)
T ss_pred e-cCcc-EeecCccceEEecc-cccccc-----------ccccC--chhcCCeeEE---------ecCCCcEEEee----
Confidence 7 7775 55699999999999 221111 11111 1122345444 11111222211
Q ss_pred CCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCC
Q 001621 338 GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEK 417 (1043)
Q Consensus 338 ~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~ 417 (1043)
....+.. ++++
T Consensus 347 ----------------------------------------------------------trN~iL~---Gt~~-------- 357 (626)
T KOG2106|consen 347 ----------------------------------------------------------TRNFILQ---GTLE-------- 357 (626)
T ss_pred ----------------------------------------------------------ccceEEE---eeec--------
Confidence 1111100 0000
Q ss_pred CCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcE
Q 001621 418 KPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRV 497 (1043)
Q Consensus 418 ~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~ 497 (1043)
..+. -..+. . . ...| .+ +.+|+.+.
T Consensus 358 ------~~f~-----------~~v~g--h-~------------------------delw----------gl-a~hps~~q 382 (626)
T KOG2106|consen 358 ------NGFT-----------LTVQG--H-G------------------------DELW----------GL-ATHPSKNQ 382 (626)
T ss_pred ------CCce-----------EEEEe--c-c------------------------ccee----------eE-EcCCChhh
Confidence 0000 00000 0 0 0011 12 56788889
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeee
Q 001621 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 577 (1043)
Q Consensus 498 l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~ 577 (1043)
|+|++.|+.|++|+ ... ++.... + ..++.|++|.|.| .+|+|+..|...|.|..+.. .
T Consensus 383 ~~T~gqdk~v~lW~--~~k--~~wt~~--~--------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-l------ 440 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHK--LEWTKI--I--------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-L------ 440 (626)
T ss_pred eeeccCcceEEEcc--CCc--eeEEEE--e--------cCceeEeeccCcc-eEEEeeccceEEEEecccce-e------
Confidence 99999999999999 222 222211 1 1389999999999 99999999999999987631 1
Q ss_pred ccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCc-eEEEEeecCCCCCCCeEEEEE
Q 001621 578 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISMTW 656 (1043)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~-~~l~~~~~~~~~~~~V~sl~f 656 (1043)
..+..-+.++++++|||+|.+||+|+.|+.|.|+-+... +........ +.++|++|.|
T Consensus 441 -------------------v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDw 499 (626)
T KOG2106|consen 441 -------------------VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDW 499 (626)
T ss_pred -------------------EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeee
Confidence 112233889999999999999999999999999998553 332222211 3499999999
Q ss_pred EeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCC--CceeEEEEEeccEEEEeeCc
Q 001621 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKK--KVIAISMEVIDSVRLYSRKS 734 (1043)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~--~~~a~~~~v~~~irl~~~~~ 734 (1043)
|+++ +||.+-+-|-.|..|.+..-+ ...++..-+ ......+|. +
T Consensus 500 S~Ds----------------------~~~~~~S~d~eiLyW~~~~~~--~~ts~kDvkW~t~~c~lGF~--------v-- 545 (626)
T KOG2106|consen 500 SSDS----------------------QFLVSNSGDYEILYWKPSECK--QITSVKDVKWATYTCTLGFE--------V-- 545 (626)
T ss_pred cCCC----------------------ceEEeccCceEEEEEccccCc--ccceecceeeeeeEEEEEEE--------E--
Confidence 8654 679999999999999433322 222122111 001111111 0
Q ss_pred ccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhh---hhhhcccceeeeeccCCCceeeEec
Q 001621 735 VIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLEL---VMESSLMSILRWNFKANMDKTISAD 811 (1043)
Q Consensus 735 ~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~---~~~~~l~~~~~~~~~~~~~~~i~~s 811 (1043)
-|.....+ ...|+. +-.+..|+++...|+|++|+-|=-.- ..++.- ...+++.++|+
T Consensus 546 --~g~s~~t~----i~a~~r------s~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~g--------hs~~vt~V~Fl 605 (626)
T KOG2106|consen 546 --FGGSDGTD----INAVAR------SHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGG--------HSSHVTNVAFL 605 (626)
T ss_pred --ecccCCch----HHHhhh------hhhhhhhhccccCceEEEEccccCCCcccceeecc--------ccceeEEEEEe
Confidence 01111111 011211 23466899999999999999984432 222322 23668889999
Q ss_pred -CCcEEEEcccee
Q 001621 812 -NGQITLANGSEV 823 (1043)
Q Consensus 812 -dg~~~l~~g~e~ 823 (1043)
+.+.++++|.|.
T Consensus 606 ~~d~~li~tg~D~ 618 (626)
T KOG2106|consen 606 CKDSHLISTGKDT 618 (626)
T ss_pred eCCceEEecCCCc
Confidence 999999999443
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=255.02 Aligned_cols=487 Identities=13% Similarity=0.155 Sum_probs=292.7
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCc-eE-E-----EecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 44 DHIQRLLAIATLDGRIKVIGGDGI-EG-L-----LISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 44 sp~g~lLAvgt~dG~I~v~~~~~~-~~-~-----~~~~~~~~V~~l~Fs~d--~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
.|-|..|.+++.++.|+||+.... +. . +...+. -|++|. +|. -..++.++.+|.+++||+++++.++++
T Consensus 121 ~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~-~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f 198 (910)
T KOG1539|consen 121 LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGD-FITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF 198 (910)
T ss_pred eeecceEEEEEccCcEEEEEeccccccccccceeeeccCC-ceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEe
Confidence 345666777777888888886542 21 1 111222 266663 442 134788999999999999999999999
Q ss_pred e-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE-
Q 001621 115 K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR- 192 (1043)
Q Consensus 115 ~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~- 192 (1043)
+ +...||++.-+|..+.+++|..+|+|.++++..++..+. |+.+ .++|++++|..+ |+.
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s---Fk~d--------------~g~VtslSFrtD--G~p~ 259 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS---FKQD--------------WGRVTSLSFRTD--GNPL 259 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE---EEcc--------------ccceeEEEeccC--CCee
Confidence 7 569999999999999999999999999998877643333 4433 378999999985 544
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
|++|...|.+.+||++..+.+..... .|...|+.+.|. |....++|.+.|+
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~n----------------------------ah~~sv~~~~fl-~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRN----------------------------AHYGSVTGATFL-PGEPVLVTAGADN 310 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeec----------------------------cccCCcccceec-CCCceEeeccCCC
Confidence 56677779999999998887655421 135667888886 8899999999999
Q ss_pred cEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccc
Q 001621 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1043)
Q Consensus 273 ~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~ 352 (1043)
++++|-.+++.-.. .+. ..+.+ |..|-..+++.. ..+..+.+.+.| ++++.+++....
T Consensus 311 Slk~~vfD~~dg~p--------R~L--R~R~G-Hs~Pp~~irfy~-------~~g~~ilsa~~D----rt~r~fs~~~e~ 368 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVP--------RLL--RSRGG-HSAPPSCIRFYG-------SQGHFILSAKQD----RTLRSFSVISES 368 (910)
T ss_pred ceeEEEeeCCCCcc--------hhe--eeccC-CCCCchheeeec-------cCcEEEEecccC----cchhhhhhhHHH
Confidence 99999887654211 111 11111 223323333221 123444444443 223222211000
Q ss_pred ccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCC
Q 001621 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1043)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 432 (1043)
... .+ |+++.-.. ..+...+ .....
T Consensus 369 ----~~~--~l----------------------------------~~~~~~~~--------------~kk~~~~-~~~~~ 393 (910)
T KOG1539|consen 369 ----QSQ--EL----------------------------------GQLHNKKR--------------AKKVNVF-STEKL 393 (910)
T ss_pred ----HhH--hh----------------------------------cccccccc--------------ccccccc-chhhh
Confidence 000 00 00000000 0000000 00000
Q ss_pred CCCcceEEEEEec-----------cCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEE
Q 001621 433 SDPIMTVAEFMLL-----------PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAG 501 (1043)
Q Consensus 433 ~~~~it~~~~~~~-----------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg 501 (1043)
..++|+..++.-. +.+...+..|+..- +..+++.+....--+.. . ...++ +.++.|+..+.|
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n---~~~G~~~L~~~~~~~~~--~-~~~av-~vs~CGNF~~IG 466 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN---KTSGRHVLDPKRFKKDD--I-NATAV-CVSFCGNFVFIG 466 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccC---cccccEEecCccccccC--c-ceEEE-EEeccCceEEEe
Confidence 0111222211100 00111122343210 00011111100000000 1 12234 688999999999
Q ss_pred eCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeecc--
Q 001621 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE-- 579 (1043)
Q Consensus 502 ~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~-- 579 (1043)
+..|+|-++++++|-...-+. +-..|..+|+.|+...-++.+++++.+|.+..|+|...........-..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~--------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~ 538 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFG--------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT 538 (910)
T ss_pred ccCCeEEEEEcccCeeecccc--------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc
Confidence 999999999999986332211 1136889999999999999999999999999999987641111100000
Q ss_pred ---------------CCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecC
Q 001621 580 ---------------TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1043)
Q Consensus 580 ---------------~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~ 644 (1043)
+.-.+..+.. ........|.+|+..||+++|||||++|++++.|++|++||+.++.++-...+
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~-~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v- 616 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDV-VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV- 616 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEc-hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-
Confidence 0000111100 00011134789999999999999999999999999999999999999866554
Q ss_pred CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccC-ceEEEEcC
Q 001621 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD-AKISIVGG 699 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~d-g~I~~~d~ 699 (1043)
.++.+++.|+|.| .+|++...| .-|++|-.
T Consensus 617 ---d~~~~sls~SPng----------------------D~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 ---DSPCTSLSFSPNG----------------------DFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ---CCcceeeEECCCC----------------------CEEEEEEecCceEEEEEc
Confidence 6899999998765 458887766 44666653
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=228.02 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=152.0
Q ss_pred CEEEEEEcCCcEEEEcCCCceEEEecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEeecC-CCEEEE
Q 001621 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLKWE-SNITAF 123 (1043)
Q Consensus 48 ~lLAvgt~dG~I~v~~~~~~~~~~~~~~~-~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~--~l~~~~~~-~~Vtav 123 (1043)
-+||+++.|-+||+|....+.+..++++. ..|..|+..|+++.|++++ ...|+++|++++. ++.++..+ .+|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 58999999999999999999998888774 5899999999987766665 5689999999976 57888877 899999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEE
Q 001621 124 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1043)
Q Consensus 124 ~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~ 203 (1043)
.|..+|+|||+|++||+++||++...... +. -.+.++|.+|..||. .+. |+++..+|.|+
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~q--------------R~----~~~~spVn~vvlhpn-Qte-Lis~dqsg~ir 149 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--------------RN----YQHNSPVNTVVLHPN-QTE-LISGDQSGNIR 149 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccc--------------hh----ccCCCCcceEEecCC-cce-EEeecCCCcEE
Confidence 99999999999999999999998652110 11 024589999999996 454 99999999999
Q ss_pred EEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 204 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
+||+.+..+.+.+.. + ....|+++.-. |||++++.+..-|...+|++.+
T Consensus 150 vWDl~~~~c~~~liP-------e---------------------~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 150 VWDLGENSCTHELIP-------E---------------------DDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEEccCCccccccCC-------C---------------------CCcceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 999998866543311 0 15679999986 9999999999999999999854
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=225.43 Aligned_cols=280 Identities=13% Similarity=0.132 Sum_probs=213.7
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 89 GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
-+|++++-|.+|++|.+.+|.+..+++++ +.|+.+.+.|++..|++|+ ...||++++........ ..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv---~t~------- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPV---ATF------- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCce---eEE-------
Confidence 57999999999999999999999999865 8999999999999999886 45699998876443221 111
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
.+|..-|++|.|+- +|+.+.+|++||+++|||++.-.+.+.+.+
T Consensus 80 -----e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------------------- 123 (311)
T KOG0315|consen 80 -----EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------------------- 123 (311)
T ss_pred -----eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhccC-----------------------------
Confidence 24567799999998 599999999999999999998555443322
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCc
Q 001621 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~ 327 (1043)
..+|++++.+ |+...|++|..+|.|++||+.+..+... + -|++.
T Consensus 124 -~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~~-------------l---------------------iPe~~ 167 (311)
T KOG0315|consen 124 -NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTHE-------------L---------------------IPEDD 167 (311)
T ss_pred -CCCcceEEec-CCcceEEeecCCCcEEEEEccCCccccc-------------c---------------------CCCCC
Confidence 6789999997 9999999999999999999854321110 0 00000
Q ss_pred eEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeeccc
Q 001621 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1043)
Q Consensus 328 ~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~ 407 (1043)
T Consensus 168 -------------------------------------------------------------------------------- 167 (311)
T KOG0315|consen 168 -------------------------------------------------------------------------------- 167 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCC
Q 001621 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1043)
Q Consensus 408 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~ 487 (1043)
..|+.
T Consensus 168 ---------------------------~~i~s------------------------------------------------ 172 (311)
T KOG0315|consen 168 ---------------------------TSIQS------------------------------------------------ 172 (311)
T ss_pred ---------------------------cceee------------------------------------------------
Confidence 00000
Q ss_pred ccccCCCCcEEEEEeCCCcEEEEeCCCCC----ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEE
Q 001621 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPV----FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIY 563 (1043)
Q Consensus 488 ~~~~s~~~~~l~tg~~DgtVriWD~~~~~----l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~ 563 (1043)
+ ...++|.+++.+-.-|...+|++-... +.|+.. +..|+.-+...-||||+++||+++.|.+|+||
T Consensus 173 l-~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k---------~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 173 L-TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK---------FQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred E-EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh---------eecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 1 233556667777777777788776543 222222 33677889999999999999999999999999
Q ss_pred EecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEE
Q 001621 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1043)
Q Consensus 564 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~ 640 (1043)
+...- +.....+.+|+.-|...+||.||++|++|+.|+++++||+..++.+..
T Consensus 243 n~~~~------------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 243 NTDDF------------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred ecCCc------------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 98752 111235689999999999999999999999999999999999886643
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=229.91 Aligned_cols=210 Identities=16% Similarity=0.199 Sum_probs=174.4
Q ss_pred ccCccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC--ceEEEecCCCCCeEEEEEecCCCEEEEEECCC
Q 001621 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG--IEGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1043)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~--~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~ 98 (1043)
.-.|..+.+. .||.++|.++.|+++.++|++++.||.+-|||.-. .+..++++ ..-|..++|+|.+.++++++-||
T Consensus 42 ~i~~~~rr~L-kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 42 RIQMRTRRTL-KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeeeeEEEe-cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCCCeEEecCcCc
Confidence 4455555444 59999999999999999999999999999999743 34444443 36899999999999999999999
Q ss_pred cEEEEECCCC------ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCC
Q 001621 99 EIQVWSLESR------SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1043)
Q Consensus 99 ~I~vWdl~t~------~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1043)
...||++.++ +..+.+..| +.+.|+.|-. ...|++|+.|.++-+|+++.. +... .
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g--~~~~---------------~ 181 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG--QQTQ---------------V 181 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc--eEEE---------------E
Confidence 9999999976 234455555 7899999977 567889999999999988763 3221 1
Q ss_pred CCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 172 ~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
..+|.+.|.+|.++|. +++.+++|+-|...+|||++++.+.+.|.+ |+..
T Consensus 182 f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-----------------------------hesD 231 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-----------------------------HESD 231 (343)
T ss_pred ecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecc-----------------------------cccc
Confidence 1368899999999997 588899999999999999999999988865 3788
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 252 ISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 252 V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
|.+++|+ |+|.-++||++|++.+++|+..
T Consensus 232 INsv~ff-P~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 232 INSVRFF-PSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred cceEEEc-cCCCeeeecCCCceeEEEeecC
Confidence 9999997 9999999999999999999854
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-25 Score=229.17 Aligned_cols=299 Identities=17% Similarity=0.208 Sum_probs=226.1
Q ss_pred eeEEeecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 110 LACCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 110 ~l~~~~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
+..++..| +.|+++++.+. .+.++.++.|.++-+|++..++.++- .+ ++ ...+|...|..+..++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G-----~~----~r---~~~GHsH~v~dv~~s~- 73 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG-----VP----VR---RLTGHSHFVSDVVLSS- 73 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC-----ce----ee---eeeccceEecceEEcc-
Confidence 34456554 88999999887 56788899999999999987643221 11 01 1245788899999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
+|++.++++.|+++++||+.+++..+.|.+ |...|.+++|+ +|.++|++
T Consensus 74 -dg~~alS~swD~~lrlWDl~~g~~t~~f~G-----------------------------H~~dVlsva~s-~dn~qivS 122 (315)
T KOG0279|consen 74 -DGNFALSASWDGTLRLWDLATGESTRRFVG-----------------------------HTKDVLSVAFS-TDNRQIVS 122 (315)
T ss_pred -CCceEEeccccceEEEEEecCCcEEEEEEe-----------------------------cCCceEEEEec-CCCceeec
Confidence 499999999999999999999988887765 37889999996 99999999
Q ss_pred EEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001621 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
|+.|.+|.+|++..... +++-
T Consensus 123 GSrDkTiklwnt~g~ck----------------------------------------------------------~t~~- 143 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCK----------------------------------------------------------YTIH- 143 (315)
T ss_pred CCCcceeeeeeecccEE----------------------------------------------------------EEEe-
Confidence 99999999999732100 0000
Q ss_pred cCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCC
Q 001621 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1043)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~ 427 (1043)
++
T Consensus 144 --------------------------------------------------------~~---------------------- 145 (315)
T KOG0279|consen 144 --------------------------------------------------------ED---------------------- 145 (315)
T ss_pred --------------------------------------------------------cC----------------------
Confidence 00
Q ss_pred cccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcE
Q 001621 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1043)
Q Consensus 428 ~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtV 507 (1043)
.+..+|+|+.|+|.. ...++++++.|++|
T Consensus 146 ----~~~~WVscvrfsP~~-----------------------------------------------~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 146 ----SHREWVSCVRFSPNE-----------------------------------------------SNPIIVSASWDKTV 174 (315)
T ss_pred ----CCcCcEEEEEEcCCC-----------------------------------------------CCcEEEEccCCceE
Confidence 012345555554311 12379999999999
Q ss_pred EEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeee
Q 001621 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1043)
Q Consensus 508 riWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~ 587 (1043)
|+||+..-++.. .+.+|+..|+.++|||||.++++|+.||.+.+||++.....
T Consensus 175 KvWnl~~~~l~~-----------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l---------------- 227 (315)
T KOG0279|consen 175 KVWNLRNCQLRT-----------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL---------------- 227 (315)
T ss_pred EEEccCCcchhh-----------ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee----------------
Confidence 999998755321 12489999999999999999999999999999999875431
Q ss_pred cCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC-CC-----CCCeEEEEEEeecC
Q 001621 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-GS-----SSPIISMTWTEFKN 661 (1043)
Q Consensus 588 ~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~-~~-----~~~V~sl~fs~~~~ 661 (1043)
....|...|.+++|+|+--.|+.+...+ |+|||+++.+++....+.. +. ...-.+++|+.+|
T Consensus 228 ----------ysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG- 295 (315)
T KOG0279|consen 228 ----------YSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG- 295 (315)
T ss_pred ----------EeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-
Confidence 1256889999999999998888887776 9999999999987665432 11 1234667887655
Q ss_pred CccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCC
Q 001621 662 THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1043)
Q Consensus 662 ~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~ 700 (1043)
..|+.|-.|+-|++|...
T Consensus 296 ---------------------~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 ---------------------QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---------------------cEEEeeecCCcEEEEEee
Confidence 459999999999999854
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-25 Score=244.52 Aligned_cols=206 Identities=14% Similarity=0.242 Sum_probs=176.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
.+..|.++.|+|.--++..+-..|.|.||+-+....+..++ ...||++..|.+...++++++.|..|+|+|++|++.++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 56789999999999999999999999999988776665554 35799999999999999999999999999999999999
Q ss_pred EeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 113 CLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 113 ~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
.+..| ..|.|++++|...+++++++|-+|++|+++.. +... . ...+|..-|++|+|+|.|..
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------wa~~------q--tfeGH~HyVMqv~fnPkD~n- 154 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------WACE------Q--TFEGHEHYVMQVAFNPKDPN- 154 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--------eeee------e--EEcCcceEEEEEEecCCCcc-
Confidence 99866 78999999999999999999999999999863 1111 1 11367788999999999655
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC--CEEEEEE
Q 001621 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVGY 269 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g--~~l~tg~ 269 (1043)
.+++++-|++|++|++.+..+.+++.+ |.+.|.|++|. +.| .+|+||+
T Consensus 155 tFaS~sLDrTVKVWslgs~~~nfTl~g-----------------------------HekGVN~Vdyy-~~gdkpylIsga 204 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHPNFTLEG-----------------------------HEKGVNCVDYY-TGGDKPYLISGA 204 (794)
T ss_pred ceeeeeccccEEEEEcCCCCCceeeec-----------------------------cccCcceEEec-cCCCcceEEecC
Confidence 599999999999999998888777754 37889999996 554 5899999
Q ss_pred cCCcEEEEcCCCCCccc
Q 001621 270 IDGDILLWNTSTTASTK 286 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~~~~ 286 (1043)
.|.+|++||..+..+++
T Consensus 205 DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred CCceEEEeecchHHHHH
Confidence 99999999997765544
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-25 Score=241.60 Aligned_cols=331 Identities=20% Similarity=0.286 Sum_probs=249.6
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEEcCCcEEEEcCCC------ceEEEe---------cCCCCCeEEEEEecCCCEEEEEEC
Q 001621 33 GIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG------IEGLLI---------SPSQLPYKNLEFLQNQGFLISITN 96 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~-lLAvgt~dG~I~v~~~~~------~~~~~~---------~~~~~~V~~l~Fs~d~~~Lvs~s~ 96 (1043)
+|.+.|.+++|+|.-. +||+|+.|-+.++|+... .+..+. .+....|++|+|+.+|..|++++.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3788999999999766 999999999999998653 111111 122457999999999999999999
Q ss_pred CCcEEEEECCCCceeEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCC
Q 001621 97 DNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1043)
Q Consensus 97 d~~I~vWdl~t~~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1043)
||.+++|+.. |.++.++. +.++|.++.++-.|+|+++|+-||++-+|+.-....+.. |.+ |
T Consensus 256 ~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~---f~~--------------~ 317 (524)
T KOG0273|consen 256 DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ---FEF--------------H 317 (524)
T ss_pred CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe---eee--------------c
Confidence 9999999975 55666775 459999999999999999999999998998654322111 221 2
Q ss_pred CCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 176 ~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
..+-..|.|..+ . -+++.+.||.|.|+-+....++..+.+ |..+|.++
T Consensus 318 s~~~lDVdW~~~--~-~F~ts~td~~i~V~kv~~~~P~~t~~G-----------------------------H~g~V~al 365 (524)
T KOG0273|consen 318 SAPALDVDWQSN--D-EFATSSTDGCIHVCKVGEDRPVKTFIG-----------------------------HHGEVNAL 365 (524)
T ss_pred cCCccceEEecC--c-eEeecCCCceEEEEEecCCCcceeeec-----------------------------ccCceEEE
Confidence 344466778763 3 389999999999999998888877654 47899999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCC
Q 001621 256 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~ 335 (1043)
.|+ |.|..|++++.|+++++|+......... +.. |...|..+.|+
T Consensus 366 k~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~~-----------l~~----Hskei~t~~ws------------------- 410 (524)
T KOG0273|consen 366 KWN-PTGSLLASCSDDGTLKIWSMGQSNSVHD-----------LQA----HSKEIYTIKWS------------------- 410 (524)
T ss_pred EEC-CCCceEEEecCCCeeEeeecCCCcchhh-----------hhh----hccceeeEeec-------------------
Confidence 997 9999999999999999999754322110 000 11112222121
Q ss_pred CCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccC
Q 001621 336 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 415 (1043)
Q Consensus 336 ~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~ 415 (1043)
T Consensus 411 -------------------------------------------------------------------------------- 410 (524)
T KOG0273|consen 411 -------------------------------------------------------------------------------- 410 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCC
Q 001621 416 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 495 (1043)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~ 495 (1043)
|.+ .+. .-+..+
T Consensus 411 ----------------------------p~g----------------------------------~v~------~n~~~~ 422 (524)
T KOG0273|consen 411 ----------------------------PTG----------------------------------PVT------SNPNMN 422 (524)
T ss_pred ----------------------------CCC----------------------------------Ccc------CCCcCC
Confidence 000 000 011234
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccccee
Q 001621 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1043)
Q Consensus 496 ~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~ 575 (1043)
..+++++.|++|++||+..+. +++.+ ..|+.||.+|+|||++++||+|+.||.|.||+..+..-.
T Consensus 423 ~~l~sas~dstV~lwdv~~gv--~i~~f---------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~---- 487 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGV--PIHTL---------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV---- 487 (524)
T ss_pred ceEEEeecCCeEEEEEccCCc--eeEee---------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee----
Confidence 478999999999999999988 55554 478899999999999999999999999999998774311
Q ss_pred eeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001621 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1043)
Q Consensus 576 f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~ 633 (1043)
++ ..-++.|..|+|+-+|.+|.+...||.|++.|++
T Consensus 488 ------------------~s----~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 488 ------------------KS----YQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ------------------Ee----ecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 11 2345669999999999999999999999999986
No 24
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.4e-24 Score=241.20 Aligned_cols=588 Identities=14% Similarity=0.142 Sum_probs=347.8
Q ss_pred cCccceeeecc----cCCCCeEEEEEcCCCCEEEEEE--cCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEE
Q 001621 22 ADLNLRIAVHY----GIPATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISI 94 (1043)
Q Consensus 22 ~~~~~~~~~~~----G~~~~v~~lafsp~g~lLAvgt--~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~ 94 (1043)
.+|+++...+. .+...++|+||+++|+++|+|- ..-.++||++.....+.++ .|+..|++++|+|.+.|++++
T Consensus 61 Vlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 61 VLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred EEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEee
Confidence 56666654442 2334689999999999999997 5678999998654444333 467899999999999999999
Q ss_pred ECCC--cEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeec-----------
Q 001621 95 TNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNIS----------- 161 (1043)
Q Consensus 95 s~d~--~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~----------- 161 (1043)
+... .|-+||++..-....-+..+.|++++|+.+|.|+++.. +.+|++|.++..+ +... |..++
T Consensus 141 GsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~-Kykd-piPl~gRs~~lg~lr~ 217 (1080)
T KOG1408|consen 141 GSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQS-KYKD-PIPLPGRSYFLGNLRF 217 (1080)
T ss_pred ccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccc-cccC-Cccccchhhhcccccc
Confidence 8644 56789988766666666678999999999999988765 5679999988644 1110 10000
Q ss_pred ccccccccCCC-----------CC-----------------CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEE
Q 001621 162 ADALSEKAGFP-----------LL-----------------SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1043)
Q Consensus 162 ~~~~~~~~~~~-----------~~-----------------~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~ 213 (1043)
++++.-+.+.. .+ ...-..||+.+. ++++.|+.+|.|+||+-.+-..+
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlFnp~tL~y~ 293 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLFNPETLDYA 293 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeecCcchhhhc
Confidence 00000000000 00 112234555554 36899999999999998765443
Q ss_pred EEeCCcccccccccccCCCCCCCCcccCcc-----CCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccc
Q 001621 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGIS-----EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQ 288 (1043)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~ 288 (1043)
.++.. .+.+ +...+.+.+.. .....-....++.|. |....+.+.|.|.+|.+||+.+.....
T Consensus 294 ~Tlpr-----~hal-----g~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvrD~~kvg-- 360 (1080)
T KOG1408|consen 294 GTLPR-----SHAL-----GSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVRDVNKVG-- 360 (1080)
T ss_pred ccccc-----cccc-----ccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEecccccccc--
Confidence 33321 0000 00000000000 001112234566786 899999999999999999997643221
Q ss_pred cCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCC
Q 001621 289 QTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT 368 (1043)
Q Consensus 289 ~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~ 368 (1043)
.+..+ | +. .--+|++ +++.|...- +
T Consensus 361 --------------------k~~s~---------------l--yH--------S~ciW~V------e~~p~nv~~--~-- 385 (1080)
T KOG1408|consen 361 --------------------KCSSM---------------L--YH--------SACIWDV------ENLPCNVHS--P-- 385 (1080)
T ss_pred --------------------ceeee---------------e--ec--------cceeeee------ccccccccC--c--
Confidence 01111 0 00 0123322 111111000 0
Q ss_pred CceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCC
Q 001621 369 GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFG 448 (1043)
Q Consensus 369 ~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~ 448 (1043)
....+|+. .++..+++|.+.+||... .-.......+.+. ..+....-.
T Consensus 386 ----~~aclp~~---------cF~TCSsD~TIRlW~l~~-------ctnn~vyrRNils------------~~l~ki~y~ 433 (1080)
T KOG1408|consen 386 ----TAACLPRG---------CFTTCSSDGTIRLWDLAF-------CTNNQVYRRNILS------------ANLSKIPYE 433 (1080)
T ss_pred ----ccccCCcc---------ceeEecCCCcEEEeeccc-------ccccceeecccch------------hhhhcCccc
Confidence 00122222 244556788999998531 0000000011111 000000000
Q ss_pred CCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeecccee
Q 001621 449 GHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQ 528 (1043)
Q Consensus 449 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~ 528 (1043)
+.+..... .+ ...+ .....-..-++....+++ +.+|+++.||+|---|++||+|+..-. .++.
T Consensus 434 d~~~q~~~---d~----~~~~-fdka~~s~~d~r~G~R~~-~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~~~~------ 496 (1080)
T KOG1408|consen 434 DSTQQIMH---DA----SAGI-FDKALVSTCDSRFGFRAL-AVSPDGQHLASGDRGGNLRVYDLQELE--YTCF------ 496 (1080)
T ss_pred cCchhhhh---hc----cCCc-ccccchhhcCcccceEEE-EECCCcceecccCccCceEEEEehhhh--hhhh------
Confidence 00000000 00 0000 000000122333344456 799999999999999999999988654 2222
Q ss_pred eEEecCCCCCeEEEEEec---CCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCC
Q 001621 529 GIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP 605 (1043)
Q Consensus 529 ~v~~~~~~~~V~~l~fsp---d~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 605 (1043)
+..|...|.|+.||- ..++||+|+.|.-|.|||+..+-. ..+.+.+|.+.
T Consensus 497 ---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------------l~qtld~HSss 549 (1080)
T KOG1408|consen 497 ---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------------LVQTLDGHSSS 549 (1080)
T ss_pred ---eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc------------------------hhhhhcccccc
Confidence 347888999999994 257899999999999999987532 12457899999
Q ss_pred EEEEEEcCCC--cEEEEEeCCCeEEEEEcCC--c-eEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCC
Q 001621 606 VRALQFTSSG--AKLAVGFECGRVAVLDMNL--L-SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNP 680 (1043)
Q Consensus 606 Vt~la~s~dg--~~lA~Gs~dg~V~vwD~~~--~-~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~ 680 (1043)
||++.|--+| ..+.+++.|..|.+ +... + -.+|.-+-......-+..++. ++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~V----------------------dp 606 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAV----------------------DP 606 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeee----------------------CC
Confidence 9999998888 77889999998654 4322 1 112221110011223444444 33
Q ss_pred CceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccCCcceeEEeeee
Q 001621 681 AEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEK 760 (1043)
Q Consensus 681 ~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~ 760 (1043)
...+++++..|..|++||.++|+...+. +- .++..-.+-| +..
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~F----------------------Kg---s~~~eG~lIK------------v~l 649 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSF----------------------KG---SRDHEGDLIK------------VIL 649 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeee----------------------cc---cccCCCceEE------------EEE
Confidence 4456899999999999999999875554 11 0111000111 122
Q ss_pred cceeEEEEEEEeeCcEEEEeCCChhhhhhhcccc--eeeeeccCCCceeeEec-CCcEEEEcc
Q 001621 761 DEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMS--ILRWNFKANMDKTISAD-NGQITLANG 820 (1043)
Q Consensus 761 ~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~--~~~~~~~~~~~~~i~~s-dg~~~l~~g 820 (1043)
+|.|.+|++-..|.++++|+..+-|-+++..=|+ +++.-|..+....|+.| ||.|++|-=
T Consensus 650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 7889999999999999999999988887664443 33555777777778888 888888854
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-25 Score=241.92 Aligned_cols=323 Identities=15% Similarity=0.214 Sum_probs=242.2
Q ss_pred cCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCC------cee--EEe-------ecCCCEEEEEEeCCCCEEEEEe
Q 001621 73 SPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESR------SLA--CCL-------KWESNITAFSVISGSHFMYIGD 136 (1043)
Q Consensus 73 ~~~~~~V~~l~Fs~d~~-~Lvs~s~d~~I~vWdl~t~------~~l--~~~-------~~~~~Vtav~~sp~~~~l~vG~ 136 (1043)
.+|..+|...+|.|-.. .|++++.|-..++|++... +.+ +.+ .....||+++++.+|..|++|.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34678899999999543 7888889999999999751 111 111 1225799999999999999999
Q ss_pred CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 137 ~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
.+|.+++|+.+.. +. . ....|.+||.+|.|+-+ |+++++++-|+++.|||..++.+.+.+
T Consensus 255 ~~G~~riw~~~G~---l~------~---------tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 255 EDGEARIWNKDGN---LI------S---------TLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred cCcEEEEEecCch---hh------h---------hhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCceEEEee
Confidence 9999999987652 11 0 01247899999999985 889999999999999999999887766
Q ss_pred CCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcc
Q 001621 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNV 296 (1043)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i 296 (1043)
.. +..+-..+.|- +...+++.+.||.|+++-+...
T Consensus 315 ~~-----------------------------~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~-------------- 349 (524)
T KOG0273|consen 315 EF-----------------------------HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED-------------- 349 (524)
T ss_pred ee-----------------------------ccCCccceEEe--cCceEeecCCCceEEEEEecCC--------------
Confidence 43 13333567785 5667888888888877665211
Q ss_pred eeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEE
Q 001621 297 VKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMIL 376 (1043)
Q Consensus 297 ~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 376 (1043)
.|+..+
T Consensus 350 -----------~P~~t~--------------------------------------------------------------- 355 (524)
T KOG0273|consen 350 -----------RPVKTF--------------------------------------------------------------- 355 (524)
T ss_pred -----------Ccceee---------------------------------------------------------------
Confidence 011111
Q ss_pred eecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHh
Q 001621 377 LSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLS 456 (1043)
Q Consensus 377 ~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~ 456 (1043)
..|+..|.++
T Consensus 356 ------------------------------------------------------~GH~g~V~al---------------- 365 (524)
T KOG0273|consen 356 ------------------------------------------------------IGHHGEVNAL---------------- 365 (524)
T ss_pred ------------------------------------------------------ecccCceEEE----------------
Confidence 0022222222
Q ss_pred HHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCC
Q 001621 457 EIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR 536 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~ 536 (1043)
.+.|.+.+|+|++.|+|+|||...... ..+ .+.+|+
T Consensus 366 ---------------------------------k~n~tg~LLaS~SdD~TlkiWs~~~~~--~~~---------~l~~Hs 401 (524)
T KOG0273|consen 366 ---------------------------------KWNPTGSLLASCSDDGTLKIWSMGQSN--SVH---------DLQAHS 401 (524)
T ss_pred ---------------------------------EECCCCceEEEecCCCeeEeeecCCCc--chh---------hhhhhc
Confidence 233556799999999999999977654 111 234677
Q ss_pred CCeEEEEEecCC---------CeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEE
Q 001621 537 APVSTLSFCFIN---------SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR 607 (1043)
Q Consensus 537 ~~V~~l~fspd~---------~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 607 (1043)
-.|..+.|+|++ ..|++++.|++|++||+..+ +++..|..|+.||.
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------------v~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------------VPIHTLMKHQEPVY 456 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------------ceeEeeccCCCceE
Confidence 788888888854 57899999999999999764 23456789999999
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEE
Q 001621 608 ALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIV 687 (1043)
Q Consensus 608 ~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~ 687 (1043)
+|+|||+|++||+|+.||.|.+|+.+++++++... -...|-.|+|+..| ..|.+
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----~~~~Ifel~Wn~~G----------------------~kl~~ 510 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----GTGGIFELCWNAAG----------------------DKLGA 510 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccchheeEeec----CCCeEEEEEEcCCC----------------------CEEEE
Confidence 99999999999999999999999999999886642 24678999997443 45888
Q ss_pred eccCceEEEEcC
Q 001621 688 LFKDAKISIVGG 699 (1043)
Q Consensus 688 gt~dg~I~~~d~ 699 (1043)
.-+|+.++++|.
T Consensus 511 ~~sd~~vcvldl 522 (524)
T KOG0273|consen 511 CASDGSVCVLDL 522 (524)
T ss_pred EecCCCceEEEe
Confidence 899999999885
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-24 Score=248.16 Aligned_cols=159 Identities=14% Similarity=0.253 Sum_probs=141.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEe
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~ 154 (1043)
...|+.|+|+|...+++++--.|.|++||.+-+.++..|. ++++|..++|.|+..++++|++|-.|+||+|...++.+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 4689999999999999999999999999999999999996 459999999999999999999999999999998554322
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCC
Q 001621 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1043)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1043)
+ .+|..-|..+.||+. -.+++++++|.+|+||++.+++++..+.+
T Consensus 89 -----L------------~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltG---------------- 133 (1202)
T KOG0292|consen 89 -----L------------LGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTG---------------- 133 (1202)
T ss_pred -----h------------ccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEec----------------
Confidence 2 367888999999995 56899999999999999999999998865
Q ss_pred CCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 235 ~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
|..-|+|+.|+ |....|++++-|.+||+||+..-+
T Consensus 134 -------------HnHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 134 -------------HNHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred -------------CceEEEeeccC-CccceEEEecccceEEEEeecchh
Confidence 36789999997 999999999999999999996543
No 27
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.6e-23 Score=232.15 Aligned_cols=519 Identities=15% Similarity=0.184 Sum_probs=307.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc---eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~---~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
.|+.|+++||+...+.||++-.||.|.+|+..+. +.++..+....|..|+|+++ ++|++++.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCce
Confidence 5889999999999999999999999999997653 44555666779999999965 7899999999999999999999
Q ss_pred eEEeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 111 ACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 111 l~~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
...+.. .+.|++++.+|.+..+++|++||.+ .+++...+++. |... + ....++|.+|+|+|+
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl--~~~s~~p~~I~---~~r~---l-------~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVL--YDFSIGPDKIT---YKRS---L-------MRQKSRVLSLSWNPT-- 165 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceE--EEEecCCceEE---EEee---c-------ccccceEEEEEecCC--
Confidence 998864 5899999999999999999999954 55555545554 3221 1 012478999999995
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
+.++++|+.||.|++||+..+..+....- ++ . . + ...+..-|+++.|. .+ ..|++|.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~---~~----d---~---------l--~k~~~~iVWSv~~L-rd-~tI~sgD 222 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITM---QL----D---R---------L--SKREPTIVWSVLFL-RD-STIASGD 222 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeee---cc----c---c---------c--ccCCceEEEEEEEe-ec-CcEEEec
Confidence 77799999999999999999876652211 00 0 0 0 00024558899887 44 4799999
Q ss_pred cCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001621 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~ 349 (1043)
+-|+|+|||...+.+++... -+...|.+++- ++...+++++|-+. +.+.+.. .
T Consensus 223 S~G~V~FWd~~~gTLiqS~~---------------~h~adVl~Lav-------~~~~d~vfsaGvd~----~ii~~~~-~ 275 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHS---------------CHDADVLALAV-------ADNEDRVFSAGVDP----KIIQYSL-T 275 (691)
T ss_pred CCceEEEEcccCcchhhhhh---------------hhhcceeEEEE-------cCCCCeEEEccCCC----ceEEEEe-c
Confidence 99999999999998876421 02334554421 33334555555432 2232221 1
Q ss_pred cccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcc
Q 001621 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1043)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 429 (1043)
... ...-...+. ..+...+..|+.++. +++....+..|.+--.. .+.-+....+-.
T Consensus 276 ~~~--~~wv~~~~r-~~h~hdvrs~av~~~----------~l~sgG~d~~l~i~~s~-----------~~~~~~h~~~~~ 331 (691)
T KOG2048|consen 276 TNK--SEWVINSRR-DLHAHDVRSMAVIEN----------ALISGGRDFTLAICSSR-----------EFKNMDHRQKNL 331 (691)
T ss_pred CCc--cceeeeccc-cCCcccceeeeeecc----------eEEecceeeEEEEcccc-----------ccCchhhhcccc
Confidence 000 000000000 112223333333321 11111222222220000 000000001100
Q ss_pred cCCCCCcceEE--EEEeccCCCCchhhHhHHH--HhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCC
Q 001621 430 IPISDPIMTVA--EFMLLPFGGHSSKGLSEIA--TFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1043)
Q Consensus 430 l~~~~~~it~~--~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~Dg 505 (1043)
.| +.+.+.+. +....-.......+|..=. ..+.....++.. ..+++... . .+++.+|+|++++-+. =.
T Consensus 332 ~p-~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llk----l~~k~~~n-I-s~~aiSPdg~~Ia~st-~~ 403 (691)
T KOG2048|consen 332 FP-ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLK----LFTKEKEN-I-SCAAISPDGNLIAIST-VS 403 (691)
T ss_pred cc-ccceeecCccceEEEEeccccccceeccCcccccccChhhhee----eecCCccc-e-eeeccCCCCCEEEEee-cc
Confidence 00 01111000 0000000001112232100 000000000000 00112111 1 2337899999999876 34
Q ss_pred cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEe-cCccEEEEEecCCCcccceeeeccCCCce
Q 001621 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1043)
Q Consensus 506 tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~-~dG~V~i~~~~~~~~~~~~~f~~~~~~~~ 584 (1043)
.++|+-++...+. ... ++.. +..-..++..+.|+-|+..++..+ ..+.+.+++..+.... ++
T Consensus 404 ~~~iy~L~~~~~v--k~~--~v~~--~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-----------el 466 (691)
T KOG2048|consen 404 RTKIYRLQPDPNV--KVI--NVDD--VPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-----------EL 466 (691)
T ss_pred ceEEEEeccCcce--eEE--Eecc--chhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-----------hh
Confidence 5788876653211 111 1111 111224688999999988877766 6778888777664321 11
Q ss_pred eeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCcc
Q 001621 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1043)
Q Consensus 585 ~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~ 664 (1043)
..+.. .+-...|+.|+.||+|+++|+.+.+|.|.+|++++.+.-+.. .....+||.++|++..
T Consensus 467 ~~~~~----------~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~~---- 529 (691)
T KOG2048|consen 467 KSIQS----------QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPFV---- 529 (691)
T ss_pred hcccc----------ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch---hccCcceeeeeccccc----
Confidence 11110 134567999999999999999999999999999987654322 2245889999998543
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCC
Q 001621 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1043)
Q Consensus 665 ~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~ 703 (1043)
..-|++.+.+++|+.+|.+..+
T Consensus 530 -----------------~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 530 -----------------RNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred -----------------cCcEEEEecCCeEEEEecchhh
Confidence 2339999999999999996655
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=235.40 Aligned_cols=299 Identities=16% Similarity=0.263 Sum_probs=236.5
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
.++.+|+.+-|.|+-...++++.|.+|++||+.++++...+++| ..|..+.|+..|.++++.+.|-.+++|+++..-.
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~- 184 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR- 184 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH-
Confidence 35779999999999877888889999999999999999999876 6799999999999999999999899998775200
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCC
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1043)
.+ + .-.+|..-|.++.|-|. |.++++++.|.+|+.|++.++-++..+.+
T Consensus 185 ------c~------k---s~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~-------------- 233 (406)
T KOG0295|consen 185 ------CI------K---SLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPG-------------- 233 (406)
T ss_pred ------HH------H---HhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccC--------------
Confidence 01 1 11356678999999996 78899999999999999999999988754
Q ss_pred CCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEE
Q 001621 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1043)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~ 312 (1043)
|...|..+.-+ .||..+++++.|.+|++|-+.++++... ++ .+..||-.
T Consensus 234 ---------------h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~~k~~-------------lR--~hEh~vEc 282 (406)
T KOG0295|consen 234 ---------------HSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQCKAE-------------LR--EHEHPVEC 282 (406)
T ss_pred ---------------chHhEEEEEec-CCeeEEEecCCCceEEEEEeccchhhhh-------------hh--ccccceEE
Confidence 25678888886 9999999999999999999988754331 11 13335555
Q ss_pred EEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEE
Q 001621 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1043)
Q Consensus 313 l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~ 392 (1043)
++|.... +
T Consensus 283 i~wap~~-------------------------------------------------------------~----------- 290 (406)
T KOG0295|consen 283 IAWAPES-------------------------------------------------------------S----------- 290 (406)
T ss_pred EEecccc-------------------------------------------------------------c-----------
Confidence 5552100 0
Q ss_pred EEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccC
Q 001621 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1043)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 472 (1043)
| | .| - .+ .
T Consensus 291 ----------~-----------------------~--------~i-----------------~----~a----t------ 298 (406)
T KOG0295|consen 291 ----------Y-----------------------P--------SI-----------------S----EA----T------ 298 (406)
T ss_pred ----------C-----------------------c--------ch-----------------h----hc----c------
Confidence 0 0 00 0 00 0
Q ss_pred cccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEE
Q 001621 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1043)
Q Consensus 473 ~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La 552 (1043)
| -...++++.+|+.|++||+||+.++. ++. .+.+|...|..++|+|-|++|+
T Consensus 299 -------~----------~~~~~~~l~s~SrDktIk~wdv~tg~--cL~---------tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 299 -------G----------STNGGQVLGSGSRDKTIKIWDVSTGM--CLF---------TLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred -------C----------CCCCccEEEeecccceEEEEeccCCe--EEE---------EEecccceeeeeEEcCCCeEEE
Confidence 0 00134589999999999999999986 333 3459999999999999999999
Q ss_pred EEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 553 ~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
+..+|+++++||++.. +|...+.+|..-|+++.|..+--++.+|+-|.++++|.-
T Consensus 351 ScaDDktlrvwdl~~~-------------------------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNL-------------------------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecCCcEEEEEeccc-------------------------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999874 334556899999999999999999999999999999974
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=3.5e-24 Score=225.51 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=136.0
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
.|..+|-+++.+|+...+++++.|....||++.++..+..+..| ..|+++.|+.+|.+|++|+-+|.|+||+.+....+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence 36789999999999899999999999999999999988888765 78999999999999999999999999998764321
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCC
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1043)
+.+. ..-..+.-+.|||+ ++.|++|+.||.+-.|.+.++...+.+.+
T Consensus 142 -----~~~~------------~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~G-------------- 188 (399)
T KOG0296|consen 142 -----WKLD------------QEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSG-------------- 188 (399)
T ss_pred -----EEee------------cccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecC--------------
Confidence 2221 11356888999996 77899999999999999998655555433
Q ss_pred CCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
|..++++=+|. |+|+++++|+.||+|++||..+++
T Consensus 189 ---------------h~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 189 ---------------HNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ---------------CCCCccccccc-CCCceEEEEecCceEEEEecCCCc
Confidence 26778888997 999999999999999999998874
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=4.6e-24 Score=269.87 Aligned_cols=317 Identities=14% Similarity=0.186 Sum_probs=227.2
Q ss_pred CCcEEEEcCCCceEEEec------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----c----eeEEeecCCCEE
Q 001621 56 DGRIKVIGGDGIEGLLIS------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----S----LACCLKWESNIT 121 (1043)
Q Consensus 56 dG~I~v~~~~~~~~~~~~------~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~----~----~l~~~~~~~~Vt 121 (1043)
+|-+++|+.........+ .+...|.+++|++++.+|++++.|+.|+|||+.+. . ++..+..+..|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 677888887665543222 25678999999999999999999999999998642 1 233444567899
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCC
Q 001621 122 AFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1043)
Q Consensus 122 av~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg 200 (1043)
+++++|. +.++++|+.||+|++|++... +.. .. ...|...|.+++|+|. ++.+|++|+.||
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~---~~------------~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg 598 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARS--QLV---TE------------MKEHEKRVWSIDYSSA-DPTLLASGSDDG 598 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCC--eEE---EE------------ecCCCCCEEEEEEcCC-CCCEEEEEcCCC
Confidence 9999874 789999999999999987642 221 01 1246788999999985 477799999999
Q ss_pred eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCC
Q 001621 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 201 ~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~ 280 (1043)
+|++||+.++..+..+.. ...|.++.|.+++|.+|++|+.||.|++||+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~------------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT------------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEEEEECCCCcEEEEEec------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998887665532 34688999965789999999999999999985
Q ss_pred CCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceee
Q 001621 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1043)
Q Consensus 281 tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~ 360 (1043)
+... ++..+ . +
T Consensus 649 ~~~~------------------------~~~~~--~----------------~--------------------------- 659 (793)
T PLN00181 649 NPKL------------------------PLCTM--I----------------G--------------------------- 659 (793)
T ss_pred CCCc------------------------cceEe--c----------------C---------------------------
Confidence 4210 00000 0 0
Q ss_pred eeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEE
Q 001621 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1043)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~ 440 (1043)
|...|+++
T Consensus 660 ------------------------------------------------------------------------h~~~V~~v 667 (793)
T PLN00181 660 ------------------------------------------------------------------------HSKTVSYV 667 (793)
T ss_pred ------------------------------------------------------------------------CCCCEEEE
Confidence 11111111
Q ss_pred EEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCC----
Q 001621 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV---- 516 (1043)
Q Consensus 441 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~---- 516 (1043)
. |. ++..++||+.|++|++||+..+.
T Consensus 668 ~-------------------------------------------------f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 668 R-------------------------------------------------FV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred E-------------------------------------------------Ee-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 1 11 23478999999999999987542
Q ss_pred ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceee
Q 001621 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1043)
Q Consensus 517 l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 596 (1043)
..++. .+.+|...+++++|+|++.+||+|+.||.|+||+...........|.. .. ....
T Consensus 698 ~~~l~---------~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~--~~----------~~~~ 756 (793)
T PLN00181 698 ETPLH---------SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT--ID----------PVSG 756 (793)
T ss_pred CcceE---------EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc--CC----------cccc
Confidence 11222 245888899999999999999999999999999976532111111100 00 0000
Q ss_pred EEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 597 ~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.....|...|.+++|+|+|..|++|+.||+|+|||+
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 112456778999999999999999999999999996
No 31
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-22 Score=229.44 Aligned_cols=559 Identities=15% Similarity=0.155 Sum_probs=334.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-cee
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLA 111 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~-~~l 111 (1043)
-+|..|+|+|-+.+.-+.|.|. .|++|-......-....+...|..+.-.. .+|++++.++.|.||+..++ ..+
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~---~i~~~~rgk~i~~~~~~~~a~v~~l~~fG--e~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGN---KIYAYARGKHIRHTTLLHGAKVHLLLPFG--EHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCc---EEEEEEccceEEEEeccccceEEEEeeec--ceEEEEEccCcEEEEEeccccccc
Confidence 4678899998877666666554 78888765444333344446777665444 56999999999999999884 222
Q ss_pred E---E-eecC-CCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 112 C---C-LKWE-SNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 112 ~---~-~~~~-~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
+ + ++.. ..|+++. +|+ .+-+++|++.|.+++|++... ++. |.+. +..+.|+++.-
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~--K~v---~~f~------------~~~s~IT~ieq 210 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTG--KVV---YTFQ------------EFFSRITAIEQ 210 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccC--cEE---EEec------------ccccceeEecc
Confidence 1 1 1222 2377763 444 567899999999999999873 333 3332 23478999999
Q ss_pred cCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
+|- =..+++|..+|+|.++|++.++.+..+.. ..+.|++++|. .||.-
T Consensus 211 sPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~-----------------------------d~g~VtslSFr-tDG~p 258 (910)
T KOG1539|consen 211 SPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQ-----------------------------DWGRVTSLSFR-TDGNP 258 (910)
T ss_pred CCc--ceEEEEeccCceEEEEEcccCcEEEEEEc-----------------------------cccceeEEEec-cCCCe
Confidence 995 44689999999999999999999988854 14789999996 88865
Q ss_pred -EEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceE
Q 001621 265 -LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1043)
Q Consensus 265 -l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~l 343 (1043)
+++|...|++.+||++..+.+......+ ...|....+.. +..++++.|.| +.+
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah--------------~~sv~~~~fl~--------~epVl~ta~~D----nSl 312 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAH--------------YGSVTGATFLP--------GEPVLVTAGAD----NSL 312 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccc--------------cCCcccceecC--------CCceEeeccCC----Cce
Confidence 5667777999999998766543211111 01111111110 23355555544 557
Q ss_pred EEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEee--cccceeecccCCCCCCC
Q 001621 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYD--NASLTTLLSQQEKKPSV 421 (1043)
Q Consensus 344 tv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d--~~~~~~~l~~~~~~~~~ 421 (1043)
.+|.++-..+. ++ .-+..-.+. ..|..+-...+.|+....- +.++..+..-
T Consensus 313 k~~vfD~~dg~--pR-~LR~R~GHs-----------------~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~------- 365 (910)
T KOG1539|consen 313 KVWVFDSGDGV--PR-LLRSRGGHS-----------------APPSCIRFYGSQGHFILSAKQDRTLRSFSVI------- 365 (910)
T ss_pred eEEEeeCCCCc--ch-heeeccCCC-----------------CCchheeeeccCcEEEEecccCcchhhhhhh-------
Confidence 77765522111 10 000000000 1112222222222222100 0000000000
Q ss_pred CCccCCcccC-CCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCcc----ccCCCCc
Q 001621 422 CPVEFPGVIP-ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPIT----KCHSVDR 496 (1043)
Q Consensus 422 ~~~~~~~~l~-~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~----~~s~~~~ 496 (1043)
.....+.+. .|. .+. .+ ......+ ..-..+.+..++ +-....+
T Consensus 366 -~e~~~~~l~~~~~-----------~~~-------------~k----k~~~~~~---~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 366 -SESQSQELGQLHN-----------KKR-------------AK----KVNVFST---EKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred -HHHHhHhhccccc-----------ccc-------------cc----cccccch---hhhcCCcceeeecccchhhhhcc
Confidence 000000000 000 000 00 0000000 000000000110 0112233
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f 576 (1043)
+++..-.+..++.|+++...+- -+.+++.-. ......+++|+.++-|+..++|...|+|-+|+++.+-..+..
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G-~~~L~~~~~----~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-- 486 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSG-RHVLDPKRF----KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-- 486 (910)
T ss_pred eeEEecCcceEEEEeccCcccc-cEEecCccc----cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc--
Confidence 4444445668999999876531 144443211 123367999999999999999999999999999875322110
Q ss_pred eccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEE
Q 001621 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1043)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 656 (1043)
..-..|.++|+.|++..-++.+++++.+|.+.+||......+....+ ..+++.+.+
T Consensus 487 --------------------~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l----~~~~~~iv~ 542 (910)
T KOG1539|consen 487 --------------------GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL----GSSITGIVY 542 (910)
T ss_pred --------------------ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc----CCCcceeee
Confidence 00157999999999999999999999999999999998877766554 567777777
Q ss_pred EeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCccc
Q 001621 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVI 736 (1043)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~ 736 (1043)
.... ..++.+..|=.|+++|..|-.++...
T Consensus 543 hr~s----------------------~l~a~~~ddf~I~vvD~~t~kvvR~f---------------------------- 572 (910)
T KOG1539|consen 543 HRVS----------------------DLLAIALDDFSIRVVDVVTRKVVREF---------------------------- 572 (910)
T ss_pred eehh----------------------hhhhhhcCceeEEEEEchhhhhhHHh----------------------------
Confidence 5322 34778888899999998886664332
Q ss_pred CCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhhhhcccceeeeeccCCCceeeEec-CCcE
Q 001621 737 QGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQI 815 (1043)
Q Consensus 737 ~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~~~~~~~~~~~~~~i~~s-dg~~ 815 (1043)
-+|-.-+.-+.+|++|.||+++..|++||+|++|+...+-...+ ...-.++++| +|++
T Consensus 573 ------------~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 573 ------------WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSPCTSLSFSPNGDF 631 (910)
T ss_pred ------------hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---------CCcceeeEECCCCCE
Confidence 11222233355589999999999999999999998876543322 2345667777 8887
Q ss_pred EEEccceeEEEEeccCCC
Q 001621 816 TLANGSEVAFVNLLAGEN 833 (1043)
Q Consensus 816 ~l~~g~e~~~~s~l~~~~ 833 (1043)
+++.-.+.--+++|+..-
T Consensus 632 LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEEEEecCceEEEEEchh
Confidence 777653333345544433
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.3e-26 Score=241.77 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=217.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEe
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~ 154 (1043)
+.+|..+.|.|+|++|++++..|...+|+..+-..-..+ .+++.|+++.+++++.|+++|+.+|.|++|......-+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 568999999999999999999999999998432211111 2458999999999999999999999999998654221111
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCC
Q 001621 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1043)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1043)
...|...|.+++|+|. |.+ ++++++||+|+|||....+.-..+.+
T Consensus 176 -----------------~ahh~eaIRdlafSpn-Dsk-F~t~SdDg~ikiWdf~~~kee~vL~G---------------- 220 (464)
T KOG0284|consen 176 -----------------QAHHAEAIRDLAFSPN-DSK-FLTCSDDGTIKIWDFRMPKEERVLRG---------------- 220 (464)
T ss_pred -----------------hHhhhhhhheeccCCC-Cce-eEEecCCCeEEEEeccCCchhheecc----------------
Confidence 1234578999999997 565 99999999999999987765444422
Q ss_pred CCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEE
Q 001621 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLH 314 (1043)
Q Consensus 235 ~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~ 314 (1043)
|.-.|.|+.|+ |....|++|+.|+.|++||..++.++.+.-
T Consensus 221 -------------HgwdVksvdWH-P~kgLiasgskDnlVKlWDprSg~cl~tlh------------------------- 261 (464)
T KOG0284|consen 221 -------------HGWDVKSVDWH-PTKGLIASGSKDNLVKLWDPRSGSCLATLH------------------------- 261 (464)
T ss_pred -------------CCCCcceeccC-CccceeEEccCCceeEeecCCCcchhhhhh-------------------------
Confidence 25679999997 999999999999999999998765432100
Q ss_pred eecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEE
Q 001621 315 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVL 394 (1043)
Q Consensus 315 w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl 394 (1043)
+
T Consensus 262 ------------------~------------------------------------------------------------- 262 (464)
T KOG0284|consen 262 ------------------G------------------------------------------------------------- 262 (464)
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred cCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcc
Q 001621 395 TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHI 474 (1043)
Q Consensus 395 ~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 474 (1043)
|-..|+.
T Consensus 263 --------------------------------------HKntVl~----------------------------------- 269 (464)
T KOG0284|consen 263 --------------------------------------HKNTVLA----------------------------------- 269 (464)
T ss_pred --------------------------------------ccceEEE-----------------------------------
Confidence 0000000
Q ss_pred cccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCC-CeEEE
Q 001621 475 KWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAV 553 (1043)
Q Consensus 475 ~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~-~~La~ 553 (1043)
+ .|.+++++|+|+|.|.+++++|+.+ ++.+.++ .+|...|++++|+|-. .+|++
T Consensus 270 -------------~-~f~~n~N~Llt~skD~~~kv~DiR~--mkEl~~~---------r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 270 -------------V-KFNPNGNWLLTGSKDQSCKVFDIRT--MKELFTY---------RGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred -------------E-EEcCCCCeeEEccCCceEEEEehhH--hHHHHHh---------hcchhhheeeccccccccceee
Confidence 1 3556678999999999999999983 2233333 4788899999999965 47789
Q ss_pred EecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001621 554 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1043)
Q Consensus 554 g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~ 633 (1043)
|+.||.|..|.+......+. .-.+|.+.|++|+|.|-|..||+|+.|.++++|...
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~------------------------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGE------------------------IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCceEEEeccccccccC------------------------CCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999999974322111 125799999999999999999999999999999974
Q ss_pred C
Q 001621 634 L 634 (1043)
Q Consensus 634 ~ 634 (1043)
-
T Consensus 381 r 381 (464)
T KOG0284|consen 381 R 381 (464)
T ss_pred C
Confidence 3
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=226.69 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=177.7
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
.||.+-|.|++++|...++|+|+.|++|+|||...++..++++ +...|+.++|++-..||++++.|+.|+.|||+..+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 5899999999999999999999999999999999999888887 678999999999999999999999999999999999
Q ss_pred eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 111 ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 111 l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
++.+.+| +.|.|+++.|..+.|++|+.|.++|||++...... +. ..+|..+|.+|.++|. +
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-----~~------------l~GH~~~V~~V~~~~~-d 289 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-----HV------------LSGHTNPVASVMCQPT-D 289 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE-----EE------------ecCCCCcceeEEeecC-C
Confidence 9999877 89999999999999999999999999998763211 11 1368899999999997 4
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
+. +++|+.|++|++||+..++....+.+ |...|.++|.+ |.-..+|+++
T Consensus 290 pq-vit~S~D~tvrlWDl~agkt~~tlt~-----------------------------hkksvral~lh-P~e~~fASas 338 (460)
T KOG0285|consen 290 PQ-VITGSHDSTVRLWDLRAGKTMITLTH-----------------------------HKKSVRALCLH-PKENLFASAS 338 (460)
T ss_pred Cc-eEEecCCceEEEeeeccCceeEeeec-----------------------------ccceeeEEecC-CchhhhhccC
Confidence 64 99999999999999999988776643 37889999997 9999999988
Q ss_pred cCCcEEEEcCCCCC
Q 001621 270 IDGDILLWNTSTTA 283 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~ 283 (1043)
.|+ |+-|+++.|.
T Consensus 339 ~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 339 PDN-IKQWKLPEGE 351 (460)
T ss_pred Ccc-ceeccCCccc
Confidence 875 6788876543
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=3.3e-23 Score=262.12 Aligned_cols=199 Identities=16% Similarity=0.237 Sum_probs=158.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc--------eEEEecCCCCCeEEEEEec-CCCEEEEEECCCcEEEE
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVW 103 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~--------~~~~~~~~~~~V~~l~Fs~-d~~~Lvs~s~d~~I~vW 103 (1043)
+|.+.|.+++|+|++++||+|+.||.|+||+.... .......+...|.+++|++ ++.+|++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 37788999999999999999999999999986431 1122233456889999987 46789999999999999
Q ss_pred ECCCCceeEEeecC-CCEEEEEEeC-CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEE
Q 001621 104 SLESRSLACCLKWE-SNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1043)
Q Consensus 104 dl~t~~~l~~~~~~-~~Vtav~~sp-~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1043)
|+.+++.+..+..| +.|++++|+| ++.+|++|+.||+|++|++.... .. ..+. +...|.+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~---~~~~-------------~~~~v~~ 622 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SI---GTIK-------------TKANICC 622 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EE---EEEe-------------cCCCeEE
Confidence 99999998888755 7899999997 78999999999999999986532 11 1111 1246899
Q ss_pred EEecCCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecC
Q 001621 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1043)
Q Consensus 182 l~~sp~d~g~~ll~~~~dg~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1043)
+.|++. +|..+++|+.||.|++||++..+ .+..+.+ |...|+++.|.
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-----------------------------h~~~V~~v~f~-- 670 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-----------------------------HSKTVSYVRFV-- 670 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecC-----------------------------CCCCEEEEEEe--
Confidence 999764 58889999999999999998764 2333211 36789999994
Q ss_pred CCCEEEEEEcCCcEEEEcCCC
Q 001621 261 SGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 261 ~g~~l~tg~~DG~I~iWd~~t 281 (1043)
++..|++++.|++|++||+..
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCC
Confidence 688999999999999999853
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.3e-24 Score=249.33 Aligned_cols=239 Identities=21% Similarity=0.311 Sum_probs=199.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce--------------------------------EEEecCCCCCeEEE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--------------------------------GLLISPSQLPYKNL 82 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~--------------------------------~~~~~~~~~~V~~l 82 (1043)
...++|+.|++++++||.|..|-.|++|...+.. ......|.+||-.+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4569999999999999999999999999865310 00122357899999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeec
Q 001621 83 EFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1043)
Q Consensus 83 ~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~ 161 (1043)
.|+|+.++|++++.|.++++|.+.+..++..+.+| .+|+.+.|+|.|-|+++++.|++-++|..|.-. |.++.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------PlRif 531 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------PLRIF 531 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------chhhh
Confidence 99999999999999999999999999999999877 799999999999999999999999999876521 22322
Q ss_pred ccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccC
Q 001621 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1043)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 241 (1043)
.+|.+.|.|++|||+ .+++++|+.|.+|++||+.+|..++.|.+
T Consensus 532 -----------aghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------------------- 575 (707)
T KOG0263|consen 532 -----------AGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTG----------------------- 575 (707)
T ss_pred -----------cccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecC-----------------------
Confidence 368899999999995 78899999999999999999999988855
Q ss_pred ccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCC
Q 001621 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKES 321 (1043)
Q Consensus 242 ~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~ 321 (1043)
|..+|++++|+ |+|.+|++|++||.|.+||+.++....... .|...|.++.|+.
T Consensus 576 ------H~~~V~al~~S-p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---------------~Ht~ti~SlsFS~---- 629 (707)
T KOG0263|consen 576 ------HKGPVTALAFS-PCGRYLASGDEDGLIKIWDLANGSLVKQLK---------------GHTGTIYSLSFSR---- 629 (707)
T ss_pred ------CCCceEEEEEc-CCCceEeecccCCcEEEEEcCCCcchhhhh---------------cccCceeEEEEec----
Confidence 48899999996 999999999999999999999987655321 1344677776642
Q ss_pred CCCCCceEEEecCCCCCCcceEEEEEcC
Q 001621 322 RSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 322 ~~~~~~~llv~gg~~~~~~~~ltv~~l~ 349 (1043)
++.+||+||.+ +.+++|++.
T Consensus 630 ----dg~vLasgg~D----nsV~lWD~~ 649 (707)
T KOG0263|consen 630 ----DGNVLASGGAD----NSVRLWDLT 649 (707)
T ss_pred ----CCCEEEecCCC----CeEEEEEch
Confidence 56788888766 789999864
No 36
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-23 Score=213.28 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=189.3
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
.||...|+.++.+++|++..+|++||++++||....+....+. |..-|.+++|++|..++++++.|++|.+||+-.. +
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-c 138 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-C 138 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-E
Confidence 6899999999999999999999999999999998877665554 5678999999999999999999999999998654 4
Q ss_pred eEEeec---CCCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 111 ACCLKW---ESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 111 l~~~~~---~~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
..++.. .+-|+|+.|+|. ..+++.++.|++|+||+++.- + +.. ...+|.+.|+.++++
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--~-------l~~--------~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--Q-------LRT--------TFIGHSGYVNTVTVS 201 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc--c-------hhh--------ccccccccEEEEEEC
Confidence 445543 357999999999 679999999999999998762 1 111 123578899999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
| ||...++|+.||.+.|||+++++.+..+++ ...|.++||+ |+...|
T Consensus 202 p--DGslcasGgkdg~~~LwdL~~~k~lysl~a------------------------------~~~v~sl~fs-pnrywL 248 (315)
T KOG0279|consen 202 P--DGSLCASGGKDGEAMLWDLNEGKNLYSLEA------------------------------FDIVNSLCFS-PNRYWL 248 (315)
T ss_pred C--CCCEEecCCCCceEEEEEccCCceeEeccC------------------------------CCeEeeEEec-CCceeE
Confidence 9 599889999999999999999998877754 6779999996 987666
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
+.+. +..|+|||+.++..+....-+...+ ..........+++|+. +|..|.+|-.+ +.+++
T Consensus 249 ~~at-~~sIkIwdl~~~~~v~~l~~d~~g~------s~~~~~~~clslaws~--------dG~tLf~g~td----~~irv 309 (315)
T KOG0279|consen 249 CAAT-ATSIKIWDLESKAVVEELKLDGIGP------SSKAGDPICLSLAWSA--------DGQTLFAGYTD----NVIRV 309 (315)
T ss_pred eecc-CCceEEEeccchhhhhhcccccccc------ccccCCcEEEEEEEcC--------CCcEEEeeecC----CcEEE
Confidence 5554 5569999999988766432111001 0010112235567743 45667777544 56777
Q ss_pred EEc
Q 001621 346 LSL 348 (1043)
Q Consensus 346 ~~l 348 (1043)
|.+
T Consensus 310 ~qv 312 (315)
T KOG0279|consen 310 WQV 312 (315)
T ss_pred EEe
Confidence 653
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=1.7e-22 Score=220.73 Aligned_cols=282 Identities=19% Similarity=0.316 Sum_probs=215.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
.|..+|.+++|+|++.+|++++.||.|.+||+.+++....+..+ ..++.+.++|+++++++++.+|.|++|+++....
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~- 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC- 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-
Confidence 35689999999999999999999999999999998877777654 6788999999999999999999999998865311
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCC
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1043)
. ..+ ..+...|.++.|+|. ++.++++..+|.|.+||+.+++....+..
T Consensus 86 -~---~~~------------~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------- 133 (289)
T cd00200 86 -V---RTL------------TGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRG-------------- 133 (289)
T ss_pred -e---EEE------------eccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEecc--------------
Confidence 1 111 134568999999995 66566666699999999998777655432
Q ss_pred CCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEE
Q 001621 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1043)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~ 312 (1043)
+...|.+++|+ |++.++++++.||.|++||+.+++... .
T Consensus 134 ---------------~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------------------~ 172 (289)
T cd00200 134 ---------------HTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGKCVA-------------------------T 172 (289)
T ss_pred ---------------CCCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccccce-------------------------e
Confidence 25679999996 999999988889999999985321100 0
Q ss_pred EEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEE
Q 001621 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1043)
Q Consensus 313 l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~ 392 (1043)
+
T Consensus 173 ~------------------------------------------------------------------------------- 173 (289)
T cd00200 173 L------------------------------------------------------------------------------- 173 (289)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccC
Q 001621 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1043)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 472 (1043)
.. +...+++
T Consensus 174 -----------~~---------------------------~~~~i~~--------------------------------- 182 (289)
T cd00200 174 -----------TG---------------------------HTGEVNS--------------------------------- 182 (289)
T ss_pred -----------ec---------------------------Cccccce---------------------------------
Confidence 00 0000000
Q ss_pred cccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEE
Q 001621 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1043)
Q Consensus 473 ~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La 552 (1043)
+ .++++++.+++++.||.|++||+..+. .+..+ ..|..+|.+++|+|++.+++
T Consensus 183 ---------------~-~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~---------~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 183 ---------------V-AFSPDGEKLLSSSSDGTIKLWDLSTGK--CLGTL---------RGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred ---------------E-EECCCcCEEEEecCCCcEEEEECCCCc--eecch---------hhcCCceEEEEEcCCCcEEE
Confidence 1 244556678888889999999998765 22222 25667999999999988888
Q ss_pred EEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001621 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1043)
Q Consensus 553 ~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD 631 (1043)
+++.+|.|++|++..... ...+..|...|++++|+|++.+|++++.||.|++||
T Consensus 236 ~~~~~~~i~i~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRTGEC-------------------------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCcee-------------------------EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888899999999875321 123467889999999999999999999999999996
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=1.5e-22 Score=221.13 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=162.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l 111 (1043)
+|++.|++++|+|++++|++|+.||.|++|+....+..... .+...+..+.|++++.+|++++.++.|++||+.+++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 78899999999999999999999999999998765443333 34567889999999889999999999999999998888
Q ss_pred EEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 112 CCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 112 ~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
..+..+ ..|.++.++|++.++++++.+|.|++|++... +.. +.+ ..+...|.++.|+|. +
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~---~~~------------~~~~~~i~~~~~~~~--~ 147 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCL---TTL------------RGHTDWVNSVAFSPD--G 147 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEE---EEe------------ccCCCcEEEEEEcCc--C
Confidence 877755 58999999999999998888999999987632 221 111 134568999999995 6
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
.+++++..+|.|.+||+.+++.+..+.. +...|.+++|+ |++..+++++.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------------------------~~~~i~~~~~~-~~~~~l~~~~~ 197 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTG-----------------------------HTGEVNSVAFS-PDGEKLLSSSS 197 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEec-----------------------------CccccceEEEC-CCcCEEEEecC
Confidence 6555565699999999988776655422 25579999996 99999999999
Q ss_pred CCcEEEEcCCC
Q 001621 271 DGDILLWNTST 281 (1043)
Q Consensus 271 DG~I~iWd~~t 281 (1043)
||.|++||+.+
T Consensus 198 ~~~i~i~d~~~ 208 (289)
T cd00200 198 DGTIKLWDLST 208 (289)
T ss_pred CCcEEEEECCC
Confidence 99999999854
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=7.7e-23 Score=241.30 Aligned_cols=202 Identities=18% Similarity=0.328 Sum_probs=168.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce--EEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CCCce
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESRSL 110 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~--~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl-~t~~~ 110 (1043)
...|+|+.|+|+|+.||.++.|+.|++|+..... ....+ .|...|..++|+|++.+|++++.|++|++||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 6789999999999999999999999999986555 33333 46779999999999999999999999999999 55688
Q ss_pred eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 111 ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 111 l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
+.++..| ..|++++|+|+++++++|+.|++|+||++.. +++.. ...+|..+|.+++|+++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~---------------~l~~hs~~is~~~f~~d-- 299 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVR---------------KLKGHSDGISGLAFSPD-- 299 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEE---------------eeeccCCceEEEEECCC--
Confidence 9999866 7899999999999999999999999999876 22220 11357789999999994
Q ss_pred CCEEEEEECCCeEEEEEccCCeE--EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
++.|++++.||.|++||+.++.. ...+.. . .... .+++++|+ |+|.+|++
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-------~-------------------~~~~-~~~~~~fs-p~~~~ll~ 351 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSG-------A-------------------ENSA-PVTSVQFS-PNGKYLLS 351 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccC-------C-------------------CCCC-ceeEEEEC-CCCcEEEE
Confidence 88899998899999999999884 333221 0 0013 79999996 99999999
Q ss_pred EEcCCcEEEEcCCCCC
Q 001621 268 GYIDGDILLWNTSTTA 283 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~ 283 (1043)
++.|+.+++||+..+.
T Consensus 352 ~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGK 367 (456)
T ss_pred ecCCCeEEEEEccCCc
Confidence 9999999999997553
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-22 Score=202.45 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=168.8
Q ss_pred eeecccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCC---ceEEEec--CCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001621 28 IAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDG---IEGLLIS--PSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~---~~~~~~~--~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
+..+.||.+.+-.+|++|. |.+||+++.|..|++|+... ..+...+ .|+..|+.++|+|.+++|++++-|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3456799999999999998 89999999999999999873 3333222 3677999999999999999999999999
Q ss_pred EEECCCC--ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 102 VWSLESR--SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 102 vWdl~t~--~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
||.=..+ +++.++.+| ..|.|++++++|.|||+.+.|.+|-||..+.++ + |.... ....|...
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-E-----fec~a--------VL~~HtqD 152 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-E-----FECIA--------VLQEHTQD 152 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-c-----EEEEe--------eecccccc
Confidence 9997765 578888866 789999999999999999999999888877432 2 22211 12357889
Q ss_pred eEEEEecCCCCCCEEEEEECCCeEEEEEcc-CC--eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 179 VVGVLPHPNSSGNRVLIAYENALVILWDVS-EA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
|-.+.|||. .+ +|++++.|.+|++|.-. .+ .+++.+.+ |...|.++
T Consensus 153 VK~V~WHPt-~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g-----------------------------~~~TVW~~ 201 (312)
T KOG0645|consen 153 VKHVIWHPT-ED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDG-----------------------------HENTVWSL 201 (312)
T ss_pred ccEEEEcCC-cc-eeEEeccCCeEEEEeecCCCCeeEEEEecC-----------------------------ccceEEEE
Confidence 999999996 33 68899999999999977 33 45566544 36689999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEcC
Q 001621 256 CWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
.|. +.|.++++++.|+++++|-.
T Consensus 202 ~F~-~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 202 AFD-NIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred Eec-CCCceEEEecCCcceEeeee
Confidence 997 99999999999999999975
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.8e-23 Score=216.80 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=162.6
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC-Cc--eEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GI--EGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~-~~--~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
..|...|--+.|+++|++||+|+.|.+.-+|.+. .. +...++ .|..+|..+.|+||.+||++++.|..+.+||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 4677789999999999999999999999999853 22 223333 3568999999999999999999999999999999
Q ss_pred CceeEEeecC--CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 108 RSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 108 ~~~l~~~~~~--~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
|.+.+.+... -.++++++.|||..+++|+.|+++..|++|... + ..|. ......|..++..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~--------~~W~-------gvr~~~v~dlait 363 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--L--------GNWE-------GVRDPKVHDLAIT 363 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--h--------hccc-------ccccceeEEEEEc
Confidence 9999888654 679999999999999999999999888877632 1 1111 0123468999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
+ ||+.+++...|..|++++..+....... .+..+|++.+.+ .+|+++
T Consensus 364 ~--Dgk~vl~v~~d~~i~l~~~e~~~dr~li------------------------------se~~~its~~iS-~d~k~~ 410 (519)
T KOG0293|consen 364 Y--DGKYVLLVTVDKKIRLYNREARVDRGLI------------------------------SEEQPITSFSIS-KDGKLA 410 (519)
T ss_pred C--CCcEEEEEecccceeeechhhhhhhccc------------------------------cccCceeEEEEc-CCCcEE
Confidence 9 5899999999999999998765433211 126789999995 999999
Q ss_pred EEEEcCCcEEEEcCCC
Q 001621 266 AVGYIDGDILLWNTST 281 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~t 281 (1043)
++--.+..|++||++.
T Consensus 411 LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEE 426 (519)
T ss_pred EEEcccCeeEEeecch
Confidence 9999999999999964
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=208.41 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=170.0
Q ss_pred ecccCCCCeEEEEEcC---CCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 30 VHYGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp---~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
.-+||+-.|..|+|+| +|-+|.+++.||.--+-+.+.+..+.++. |+..|+......|-.+-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999976 68899999999998888888777777665 5789999999888777888999999999999
Q ss_pred CCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 106 ~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
-+|..++++.+..-|.+++|+.|.++|++|+.+..+||++++..+..+. ...+|.+.|..+.|.
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~----------------E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK----------------EISGHTGGIRTVLWC 152 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch----------------hhcCCCCcceeEEEe
Confidence 9999999999999999999999999999999999999988765332211 113678899999998
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
.. .+.+|++..|++|++||.+++..++.+.. ..+|+++..+ ++|.+|
T Consensus 153 ~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------~s~VtSlEvs-~dG~il 199 (334)
T KOG0278|consen 153 HE--DKCILSSADDKTVRLWDHRTGTEVQSLEF------------------------------NSPVTSLEVS-QDGRIL 199 (334)
T ss_pred cc--CceEEeeccCCceEEEEeccCcEEEEEec------------------------------CCCCcceeec-cCCCEE
Confidence 85 34589999999999999999999988754 5679999996 999877
Q ss_pred EEEEcCCcEEEEcCCC
Q 001621 266 AVGYIDGDILLWNTST 281 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~t 281 (1043)
.+++ .++|.|||+.+
T Consensus 200 Tia~-gssV~Fwdaks 214 (334)
T KOG0278|consen 200 TIAY-GSSVKFWDAKS 214 (334)
T ss_pred EEec-CceeEEecccc
Confidence 6665 46799999753
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=199.37 Aligned_cols=295 Identities=15% Similarity=0.204 Sum_probs=215.1
Q ss_pred EEeecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 112 CCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 112 ~~~~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
+.++.+ ++|..++++|. |..||+++.|..||+|..... .... .. . ....+|...|.+++|+|.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~s~~-----ck------~-vld~~hkrsVRsvAwsp~-- 72 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-DSWT-----CK------T-VLDDGHKRSVRSVAWSPH-- 72 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-CcEE-----EE------E-eccccchheeeeeeecCC--
Confidence 444444 67999999999 899999999999999987631 1111 11 0 022357788999999995
Q ss_pred CCEEEEEECCCeEEEEEccCCe--EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
|++|++|+-|.++.||.-..+. ++..+++ |+.+|-|++|+ ++|.+|||
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-----------------------------HEnEVK~Vaws-~sG~~LAT 122 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEG-----------------------------HENEVKCVAWS-ASGNYLAT 122 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeec-----------------------------cccceeEEEEc-CCCCEEEE
Confidence 9999999999999999977653 4555544 48899999996 99999999
Q ss_pred EEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001621 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
++.|.+|-||.+..+... .++.|+.
T Consensus 123 CSRDKSVWiWe~deddEf-------------------------------------------------------ec~aVL~ 147 (312)
T KOG0645|consen 123 CSRDKSVWIWEIDEDDEF-------------------------------------------------------ECIAVLQ 147 (312)
T ss_pred eeCCCeEEEEEecCCCcE-------------------------------------------------------EEEeeec
Confidence 999999999987422100 0011100
Q ss_pred cCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCC
Q 001621 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1043)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~ 427 (1043)
+
T Consensus 148 -------------------------------------------------------------------~------------ 148 (312)
T KOG0645|consen 148 -------------------------------------------------------------------E------------ 148 (312)
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred cccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcE
Q 001621 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1043)
Q Consensus 428 ~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtV 507 (1043)
|. ++ ++.+ .++|...+|++++.|.||
T Consensus 149 -----Ht-------------qD-----------------------------------VK~V-~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 149 -----HT-------------QD-----------------------------------VKHV-IWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred -----cc-------------cc-----------------------------------ccEE-EEcCCcceeEEeccCCeE
Confidence 00 00 0012 467777899999999999
Q ss_pred EEEeCC-CCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceee
Q 001621 508 RIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1043)
Q Consensus 508 riWD~~-~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~ 586 (1043)
|+|+-. ..+-.+.. .+.+|...|.+++|.+.|..|++++.|++|+||..-..
T Consensus 175 k~~~~~~dddW~c~~---------tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------------------ 227 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQ---------TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------------------ 227 (312)
T ss_pred EEEeecCCCCeeEEE---------EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------------------
Confidence 999877 44433333 34588889999999999999999999999999996531
Q ss_pred ecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCC----ceEEEEeecCCCCCCCeEEEEEEeecCC
Q 001621 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL----LSVLFFTDDISGSSSPIISMTWTEFKNT 662 (1043)
Q Consensus 587 ~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~----~~~l~~~~~~~~~~~~V~sl~fs~~~~~ 662 (1043)
.-..|+.++..++|. +| .+|+|+.|+.|+|+-... |..-..+.....|...|++++|.|..
T Consensus 228 -----------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-- 292 (312)
T KOG0645|consen 228 -----------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-- 292 (312)
T ss_pred -----------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC--
Confidence 114688999999999 66 699999999999998653 22211111111366789999997521
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCC
Q 001621 663 HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1043)
Q Consensus 663 ~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~ 700 (1043)
++.|++|++||.|++|..+
T Consensus 293 -------------------~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 -------------------SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -------------------CCceeecCCCceEEEEEec
Confidence 3559999999999999753
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=1.6e-23 Score=240.51 Aligned_cols=204 Identities=18% Similarity=0.319 Sum_probs=180.4
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
..+||.+.|..+.|+|+.++|.+++.|++||+|......++... .|..||+.++|+|.|-|+++++.|++.++|....-
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 35899999999999999999999999999999999877665444 46789999999999999999999999999999999
Q ss_pred ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
++++.+..| +.|.|+.|.|+..|+++|+.|.+||+|+...... . ++ ..+|.++|.+|+|+|+
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--V----Ri-----------F~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--V----RI-----------FTGHKGPVTALAFSPC 588 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--E----EE-----------ecCCCCceEEEEEcCC
Confidence 999999877 8999999999999999999999999999866321 1 11 1468999999999994
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
|++|++|.+||.|.|||+..++.+..+.+ |...|.++.|+ .+|.+||+
T Consensus 589 --Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-----------------------------Ht~ti~SlsFS-~dg~vLas 636 (707)
T KOG0263|consen 589 --GRYLASGDEDGLIKIWDLANGSLVKQLKG-----------------------------HTGTIYSLSFS-RDGNVLAS 636 (707)
T ss_pred --CceEeecccCCcEEEEEcCCCcchhhhhc-----------------------------ccCceeEEEEe-cCCCEEEe
Confidence 99999999999999999999988765533 37789999996 99999999
Q ss_pred EEcCCcEEEEcCCCC
Q 001621 268 GYIDGDILLWNTSTT 282 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg 282 (1043)
|+.|++|++||+...
T Consensus 637 gg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 637 GGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCCeEEEEEchhh
Confidence 999999999998653
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=7.5e-22 Score=232.94 Aligned_cols=288 Identities=17% Similarity=0.266 Sum_probs=224.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCC
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~--~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~ 151 (1043)
+...|.++.|+++|.+|++++.|+.+++|++.+.+ .+..+..+ ..|..++|+|++.++++|+.|++|++|++... +
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-G 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-C
Confidence 35789999999999999999999999999998877 66666444 68999999999999999999999999998332 2
Q ss_pred eEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC
Q 001621 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1043)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1043)
... .. ..+|...|.+++|+|. |+++++|+.|++|+|||+++++++..+..
T Consensus 237 ~~~---~~------------l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~------------- 286 (456)
T KOG0266|consen 237 RNL---KT------------LKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKG------------- 286 (456)
T ss_pred eEE---EE------------ecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeec-------------
Confidence 221 11 1368899999999995 78899999999999999999999887754
Q ss_pred CCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceE
Q 001621 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1043)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~ 311 (1043)
|...|++++|. ++|..|++++.||.|++||+.++... .+.
T Consensus 287 ----------------hs~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~-----------------------~~~ 326 (456)
T KOG0266|consen 287 ----------------HSDGISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKL-----------------------CLK 326 (456)
T ss_pred ----------------cCCceEEEEEC-CCCCEEEEcCCCccEEEEECCCCcee-----------------------eee
Confidence 37789999996 99999999999999999998654310 000
Q ss_pred EEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEE
Q 001621 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1043)
Q Consensus 312 ~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l 391 (1043)
.+ .
T Consensus 327 ~~---------~-------------------------------------------------------------------- 329 (456)
T KOG0266|consen 327 LL---------S-------------------------------------------------------------------- 329 (456)
T ss_pred cc---------c--------------------------------------------------------------------
Confidence 00 0
Q ss_pred EEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCcc
Q 001621 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1043)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 471 (1043)
+ . ..+. .++
T Consensus 330 ------------~----------~---------~~~~-------~~~--------------------------------- 338 (456)
T KOG0266|consen 330 ------------G----------A---------ENSA-------PVT--------------------------------- 338 (456)
T ss_pred ------------C----------C---------CCCC-------cee---------------------------------
Confidence 0 0 0000 000
Q ss_pred CcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCC---CeEEEEEecCC
Q 001621 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA---PVSTLSFCFIN 548 (1043)
Q Consensus 472 ~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~---~V~~l~fspd~ 548 (1043)
.+ .|+|++.++++++.|+++++||+..+... ..+ .+|.. .+.+..+++.+
T Consensus 339 ---------------~~-~fsp~~~~ll~~~~d~~~~~w~l~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 339 ---------------SV-QFSPNGKYLLSASLDRTLKLWDLRSGKSV--GTY---------TGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred ---------------EE-EECCCCcEEEEecCCCeEEEEEccCCcce--eee---------cccCCcceeEecccccCCC
Confidence 01 47788899999999999999999987622 111 23333 45555668899
Q ss_pred CeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCC-CCCEEEEEEcCCCcEEEEEe--CCC
Q 001621 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGF--ECG 625 (1043)
Q Consensus 549 ~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~Vt~la~s~dg~~lA~Gs--~dg 625 (1043)
..+++|+.|+.|++|++.+.... ..+.+| ...|..++++|...++|+++ .|+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~-------------------------~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGIL-------------------------QRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchh-------------------------hhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 99999999999999999864211 245788 89999999999999999999 789
Q ss_pred eEEEEEcC
Q 001621 626 RVAVLDMN 633 (1043)
Q Consensus 626 ~V~vwD~~ 633 (1043)
.|++|...
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 99999764
No 46
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.91 E-value=5.2e-23 Score=234.38 Aligned_cols=291 Identities=21% Similarity=0.259 Sum_probs=177.5
Q ss_pred CeEEEEEecCCCeEEEEecCccEEEEEecCCCccc-c-----e-----eee-ccCCCceeeecC------CCcceeeEEe
Q 001621 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK-N-----F-----LFV-LETKSEVHALPE------GKISLCRAVF 599 (1043)
Q Consensus 538 ~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~-~-----~-----~f~-~~~~~~~~~~~~------~~~~~~~~~l 599 (1043)
.|++|.|++++.+||+|..+|.|.||+|..++..+ . . .|. .+.++.+.++.. .+|+++...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 69999999999999999999999999998876443 0 0 111 123566776665 5689998888
Q ss_pred cCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC-----CCCCCeEEEEEEeecCCccccCCCCCCCC
Q 001621 600 SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----GSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1043)
Q Consensus 600 ~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~-----~~~~~V~sl~fs~~~~~~~~~~~p~~~~~ 674 (1043)
...+++|++|+.|.-| ++|+|+++|++.|+|+|+|+++|+.++.+ .....|++++|+...-
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~------------- 148 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL------------- 148 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE--------------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec-------------
Confidence 8889999999999888 79999999999999999999999988765 1346799999985431
Q ss_pred CCCCCCCceEEEEeccCceEEEEcCC--C----------------CCeeecCCCCcCCCce---------------eEEE
Q 001621 675 EVPVNPAEEVIIVLFKDAKISIVGGS--S----------------ENMISSSPWHLKKKVI---------------AISM 721 (1043)
Q Consensus 675 ~~~~~~~~~~l~~gt~dg~I~~~d~~--~----------------g~~l~~~~~~~~~~~~---------------a~~~ 721 (1043)
.++.|.+.+|++||+.|.+.+|... + +.++.++++..+.+.. .+.+
T Consensus 149 -~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 149 -GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred -CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 2347889999999999999999732 1 2233333333222222 2234
Q ss_pred EEe----ccEEEEeeCcccCCCcceeeecccCCcceeEEeeee--cceeEEEEEEEeeCcEEEEeCCChhhhhhhcccce
Q 001621 722 EVI----DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEK--DEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSI 795 (1043)
Q Consensus 722 ~v~----~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~--~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~~ 795 (1043)
+++ .++|+|++.+ .++.+|.+. .+ ..|..+.++.. ...+.+|+|++.||.|++||||+|+++.+.+++..
T Consensus 228 ~vVvvSe~~irv~~~~~-~k~~~K~~~-~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPK-SKGAHKSFD-DP--FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp EEEEE-SSEEEEE-TT----EEEEE-S-S---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EEEEEcccceEEEeCCC-Ccccceeec-cc--cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 444 9999999966 444444442 11 23333343322 24789999999999999999999999999988642
Q ss_pred eeeeccCCCceeeEec-CCcEEEEcc-ceeEEEEeccCCCc--ccccCCCchhhhhhhhH
Q 001621 796 LRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENE--FSILESSPCLHDKVLEA 851 (1043)
Q Consensus 796 ~~~~~~~~~~~~i~~s-dg~~~l~~g-~e~~~~s~l~~~~~--~~~~~s~~~~~~k~~~~ 851 (1043)
.+.+..+..+++ +|+++.++| .|+.+++++..... .+...+...||...+.-
T Consensus 304 ----~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~d~L~np~~~i 359 (395)
T PF08596_consen 304 ----LDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPTDTLYNPNLII 359 (395)
T ss_dssp ------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES--------------B---TT---
T ss_pred ----cccccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCCCeEECCCCCC
Confidence 233345566778 999999999 99999999988776 44555566788776543
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=4.5e-23 Score=219.62 Aligned_cols=229 Identities=17% Similarity=0.281 Sum_probs=181.7
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc--eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~--~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~ 113 (1043)
..|..|.|.|+|+.|.+|+..|.+.+|+.... |.+++ .|..+|+++.|+.++.+++|++.+|.|++|+.+-......
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 35888999999999999999999999997433 22222 3568999999999999999999999999999876654444
Q ss_pred eecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 114 LKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 114 ~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
...+ ..|++++|+|....++++++||+|+||++.....+. ..++|.-.|.++.|||. -| .
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-----------------vL~GHgwdVksvdWHP~-kg-L 236 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-----------------VLRGHGWDVKSVDWHPT-KG-L 236 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-----------------eeccCCCCcceeccCCc-cc-e
Confidence 4445 789999999999999999999999999865421110 11467888999999997 45 6
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
+++++.|..|++||.+++.++..+-+ |...|+.+.|. |++.+|+|++.|.
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~-----------------------------HKntVl~~~f~-~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHG-----------------------------HKNTVLAVKFN-PNGNWLLTGSKDQ 286 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhh-----------------------------ccceEEEEEEc-CCCCeeEEccCCc
Confidence 89999999999999999999877632 47889999997 9999999999999
Q ss_pred cEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCC
Q 001621 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1043)
Q Consensus 273 ~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~ 336 (1043)
.++++|+.+.+.... ...|+..|..+.|. |-...||++||.|
T Consensus 287 ~~kv~DiR~mkEl~~---------------~r~Hkkdv~~~~Wh-------P~~~~lftsgg~D 328 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFT---------------YRGHKKDVTSLTWH-------PLNESLFTSGGSD 328 (464)
T ss_pred eEEEEehhHhHHHHH---------------hhcchhhheeeccc-------cccccceeeccCC
Confidence 999999986543321 11245567777774 3445677777755
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=8.4e-22 Score=202.93 Aligned_cols=203 Identities=14% Similarity=0.200 Sum_probs=165.4
Q ss_pred eeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce-EEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~-~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
.....||.+.|.++.|+|+|.+||+|+.|..|.+|++.+-+ -...+ .|.+.|..+.|.+|+..|++++.|.+++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34567999999999999999999999999999999964432 22222 46789999999999999999999999999999
Q ss_pred CCCceeEEeecC-CCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEE
Q 001621 106 ESRSLACCLKWE-SNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1043)
Q Consensus 106 ~t~~~l~~~~~~-~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~ 183 (1043)
++|++.+.++.+ .-|+++..+--| .++.+|+.||+++||+.......- .+ ...-+++++.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-----t~-------------~~kyqltAv~ 181 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-----TF-------------ENKYQLTAVG 181 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-----cc-------------ccceeEEEEE
Confidence 999999999887 456666644334 456789999999999876422100 01 1234689999
Q ss_pred ecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC
Q 001621 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1043)
Q Consensus 184 ~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~ 263 (1043)
|.-. +..+.+|.-|+.|.+||++.+..+..+.+ |..+|+.+.-+ |+|.
T Consensus 182 f~d~--s~qv~sggIdn~ikvWd~r~~d~~~~lsG-----------------------------h~DtIt~lsls-~~gs 229 (338)
T KOG0265|consen 182 FKDT--SDQVISGGIDNDIKVWDLRKNDGLYTLSG-----------------------------HADTITGLSLS-RYGS 229 (338)
T ss_pred eccc--ccceeeccccCceeeeccccCcceEEeec-----------------------------ccCceeeEEec-cCCC
Confidence 9874 67799999999999999999988877654 36789999885 9999
Q ss_pred EEEEEEcCCcEEEEcCC
Q 001621 264 ILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 264 ~l~tg~~DG~I~iWd~~ 280 (1043)
++.+-+-|.++++||+.
T Consensus 230 ~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVR 246 (338)
T ss_pred ccccccccceEEEEEec
Confidence 99999999999999984
No 49
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=4.4e-20 Score=208.27 Aligned_cols=543 Identities=13% Similarity=0.154 Sum_probs=306.5
Q ss_pred eeeecccCCCCeEEEEEcCCCC---EEEEEEcCCcEEEEcCC--CceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001621 27 RIAVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGD--GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 27 ~~~~~~G~~~~v~~lafsp~g~---lLAvgt~dG~I~v~~~~--~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
.....-||...|+|+.+-|..+ .|++|..||+|.+|... ....+..+++ ..+.++++........+..+|+.+.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEE
Confidence 4456679999999999998877 89999999999999865 3344455555 4555666665532222236889999
Q ss_pred EEECCCCc--eeEE------------------------------------------------eecC-CCEEEEEEeCCC-
Q 001621 102 VWSLESRS--LACC------------------------------------------------LKWE-SNITAFSVISGS- 129 (1043)
Q Consensus 102 vWdl~t~~--~l~~------------------------------------------------~~~~-~~Vtav~~sp~~- 129 (1043)
+||.+..+ ++.. +.+| .-|.+++|...+
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 99985443 1111 1111 234445554332
Q ss_pred --CEEEEEeCCCcEEEEEEeCCCCe--------Eee---e---------ceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 130 --HFMYIGDENGLMSVIKYDADEGK--------LFQ---L---------PYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 130 --~~l~vG~~dG~v~v~~~d~~~~~--------l~~---~---------~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
-+++++++|..||+|.+...... +.. . .|++..+ ..-.+|...|.++.|+|.
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e------all~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE------ALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh------hhhcCcccceEEEEEccc
Confidence 37889999999999998543210 000 0 0111110 012478899999999994
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEE----EEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQII----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~ 263 (1043)
+..||+++.|.++.+|.-.+..-+ ..++. .+ | ....-....|+ |++.
T Consensus 279 --~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe----------------~g--g--------~a~GF~g~lw~-~n~~ 329 (764)
T KOG1063|consen 279 --GLDLLSASADKSMIIWKPDENTGIWVDVVRLGE----------------VG--G--------SAGGFWGGLWS-PNSN 329 (764)
T ss_pred --hhhheecccCcceEEEecCCccceEEEEEEeec----------------cc--c--------cccceeeEEEc-CCCC
Confidence 767999999999999987765322 22221 00 0 02335677796 9999
Q ss_pred EEEEEEcCCcEEEEcCCCCC-ccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcce
Q 001621 264 ILAVGYIDGDILLWNTSTTA-STKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1043)
Q Consensus 264 ~l~tg~~DG~I~iWd~~tg~-~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ 342 (1043)
.|++-+.-|..++|-..+.. ..+. .....|-..|..+.| .|.+. +|.+.|.| ++
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~-------------~~iSGH~~~V~dv~W-------~psGe-flLsvs~D----QT 384 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQE-------------PVISGHVDGVKDVDW-------DPSGE-FLLSVSLD----QT 384 (764)
T ss_pred EEEEecccCcEEEEeccCccceeec-------------cccccccccceeeee-------cCCCC-EEEEeccc----cc
Confidence 99999999999999832211 1110 011224456888888 44444 55666655 33
Q ss_pred EEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCe-EEEeeccc-ceeecc-cCCCCC
Q 001621 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQ-LHFYDNAS-LTTLLS-QQEKKP 419 (1043)
Q Consensus 343 ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~-l~~~d~~~-~~~~l~-~~~~~~ 419 (1043)
-+++. .|.... +.-...+ |.-++-...+..+++... -++...+.. +.+|+.+. ....+. ..+..+
T Consensus 385 TRlFa-~wg~q~-~wHEiaR-PQiHGyDl~c~~~vn~~~---------~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~ 452 (764)
T KOG1063|consen 385 TRLFA-RWGRQQ-EWHEIAR-PQIHGYDLTCLSFVNEDL---------QFVSGADEKVLRVFEAPKSFVKSLMAICGKCF 452 (764)
T ss_pred eeeec-cccccc-ceeeecc-cccccccceeeehccCCc---------eeeecccceeeeeecCcHHHHHHHHHHhCccc
Confidence 34432 231100 0111111 111222333333333211 122222222 23444321 111110 000000
Q ss_pred CCC-CccCCcccCCC---CCcceEEEEEeccC-CCCchhhHhHHH-Hh--cccCCCCC---ccCccccc----ccCCCCC
Q 001621 420 SVC-PVEFPGVIPIS---DPIMTVAEFMLLPF-GGHSSKGLSEIA-TF--TKLHSSHT---QAGHIKWP----LSGGVPS 484 (1043)
Q Consensus 420 ~~~-~~~~~~~l~~~---~~~it~~~~~~~~~-~~~~~~~w~~~~-~~--~~~~~~~~---~~~~~~~p----l~Gg~~~ 484 (1043)
.-. ..+.....|.+ ...+ .+..+ .+.....|-+.. .. .....+++ +..+.-|| |-||..-
T Consensus 453 ~~~~~~p~gA~VpaLGLSnKa~-----~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 453 KGSDELPDGANVPALGLSNKAF-----FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred cCchhcccccccccccccCCCC-----cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 000 00000011100 0000 00000 000000011000 00 00000011 12233455 5566655
Q ss_pred CCCccccCCCCcEEEEEeCCC-----cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCcc
Q 001621 485 PVPITKCHSVDRVYLAGYHDG-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1043)
Q Consensus 485 ~~~~~~~s~~~~~l~tg~~Dg-----tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~ 559 (1043)
+.++ +.+|+++++||+..-. .|++|+..+=.. .. .+.+|+..|+.|+||||+++|++.+.|.+
T Consensus 528 v~~l-~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~---------~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 528 VYAL-AISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQ---------ELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred EEEE-EecCCCCEEeehhhhCCccceEEEEEeccchhh--hh---------eecccceEEEEEEECCCCcEEEEeecCce
Confidence 5556 7899999999986432 589998765330 11 24589999999999999999999999999
Q ss_pred EEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCc--eE
Q 001621 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL--SV 637 (1043)
Q Consensus 560 V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~--~~ 637 (1043)
+.+|......... .. + .-.+.|+--|.+..|+|+++++|++|.|.+|.||..... ..
T Consensus 596 ~sl~~~~~~~~~e-~~-----------------f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 596 VSLYEVQEDIKDE-FR-----------------F---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEeeeeecccchh-hh-----------------h---ccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 9999986543211 00 1 114789999999999999999999999999999999877 33
Q ss_pred EEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCc-eEEEEeccCceEEEEcC
Q 001621 638 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE-EVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 638 l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~-~~l~~gt~dg~I~~~d~ 699 (1043)
+-...+ ..++.+|+.++|-+.-+ ..+ .++.+|.+.|.|.+|.-
T Consensus 655 i~~~a~-~~~~~aVTAv~~~~~~~------------------~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 655 ISRFAC-LKFSLAVTAVAYLPVDH------------------NEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhhhch-hccCCceeeEEeecccc------------------ccccceEEEEecccEEEEEec
Confidence 322111 23578999999975321 112 36899999999999983
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-20 Score=209.97 Aligned_cols=201 Identities=11% Similarity=0.155 Sum_probs=172.7
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEe
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL 114 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~-~~l~~~ 114 (1043)
.|.+..|-+..+++++|+.|+.|+||+....+.+..++ |..-|++|+.+|...+++++|.|-+|++||.+.. .+..++
T Consensus 57 PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred chhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 36677888888999999999999999999988887776 5678999999999999999999999999999875 577788
Q ss_pred ecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 115 KWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 115 ~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
.+| .-|-+++|.|. .+.+++++-|++|+||.+......+ ++ .+|...|.+|.+-|.+|-.+
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-----Tl------------~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-----TL------------EGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-----ee------------eccccCcceEEeccCCCcce
Confidence 776 57999999996 5678899999999999987643222 22 25778899999999766678
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
|++|++|.+|+|||.++..+++++++ |...|..++|+ |.-.+|+||++||
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLeG-----------------------------Ht~Nvs~v~fh-p~lpiiisgsEDG 249 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLEG-----------------------------HTNNVSFVFFH-PELPIIISGSEDG 249 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhhc-----------------------------ccccceEEEec-CCCcEEEEecCCc
Confidence 99999999999999999999888765 37789999997 9999999999999
Q ss_pred cEEEEcCCCCCc
Q 001621 273 DILLWNTSTTAS 284 (1043)
Q Consensus 273 ~I~iWd~~tg~~ 284 (1043)
++++|+..|=++
T Consensus 250 TvriWhs~Ty~l 261 (794)
T KOG0276|consen 250 TVRIWNSKTYKL 261 (794)
T ss_pred cEEEecCcceeh
Confidence 999999876544
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.2e-22 Score=211.76 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=138.4
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-Cc
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RS 109 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t-~~ 109 (1043)
.|+...|+-+-|.|+--++|+++.|++|++||..+.+....+. |...|..|+|...|.+|++++.|=.+++||+++ .+
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 5788899999999999999999999999999998887754443 456799999999999999999999999999987 45
Q ss_pred eeEEeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 110 LACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 110 ~l~~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
++.++.. +..|.++.|-|.|+++++.+.|.+|+.|+++.. |.+.. ..+|...|..++.+-
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--------~cv~t---------~~~h~ewvr~v~v~~-- 245 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--------YCVKT---------FPGHSEWVRMVRVNQ-- 245 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--------eeEEe---------ccCchHhEEEEEecC--
Confidence 5665554 478999999999999999999999999999873 33321 124556788888877
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
||..+++++.|.+|++|-+.++++...+
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhh
Confidence 6988889999999999999988665443
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=1.7e-21 Score=204.17 Aligned_cols=159 Identities=13% Similarity=0.238 Sum_probs=137.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
|.+.|+++++-|...++++++.|++|+|||+.+|++..++.++ ..|..+++++--.||+++++|+.|+-|++.. +++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~--nkv 227 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY--NKV 227 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh--hhh
Confidence 3467999999999999999999999999999999999999866 8899999999999999999999999998764 222
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
+ . .--+|.+.|.+|..+|. -.+|++|++|.++++||+++...+..+.+
T Consensus 228 I-------R--------~YhGHlS~V~~L~lhPT--ldvl~t~grDst~RvWDiRtr~~V~~l~G--------------- 275 (460)
T KOG0285|consen 228 I-------R--------HYHGHLSGVYCLDLHPT--LDVLVTGGRDSTIRVWDIRTRASVHVLSG--------------- 275 (460)
T ss_pred H-------H--------HhccccceeEEEecccc--ceeEEecCCcceEEEeeecccceEEEecC---------------
Confidence 2 1 11368899999999997 34699999999999999999888877754
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
|..+|.++.+. |....++||+.|++|++||+..|
T Consensus 276 --------------H~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 276 --------------HTNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred --------------CCCcceeEEee-cCCCceEEecCCceEEEeeeccC
Confidence 37889999886 88889999999999999998654
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=6.8e-23 Score=213.28 Aligned_cols=194 Identities=16% Similarity=0.255 Sum_probs=159.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~ 113 (1043)
...|.|+.|| ...+++|..|.+|+|||....++...+ .|.+.|.+|+|.. +.+++++.|.+|+|||+++|+++.+
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhH
Confidence 3469999995 467889999999999999988877654 4678999999865 5799999999999999999999999
Q ss_pred eecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 114 LKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 114 ~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
+.+| ..|-.+.|+ ..+|++.+.|.++.||+++.... +. +.. ...+|...|..|.|.. ++
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~--------it---~rr---VLvGHrAaVNvVdfd~----ky 332 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD--------IT---LRR---VLVGHRAAVNVVDFDD----KY 332 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH--------HH---HHH---HHhhhhhheeeecccc----ce
Confidence 9876 788888886 45899999999999999876321 10 001 1246888999999975 47
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
+++++.|.+|++|++.+.+.+..+.+ |...|-|+.+. |+.+++|++|+
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~g-----------------------------HkRGIAClQYr---~rlvVSGSSDn 380 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNG-----------------------------HKRGIACLQYR---DRLVVSGSSDN 380 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhc-----------------------------ccccceehhcc---CeEEEecCCCc
Confidence 99999999999999999998877643 36778888874 89999999999
Q ss_pred cEEEEcCCCCCc
Q 001621 273 DILLWNTSTTAS 284 (1043)
Q Consensus 273 ~I~iWd~~tg~~ 284 (1043)
+|++||+..|.+
T Consensus 381 tIRlwdi~~G~c 392 (499)
T KOG0281|consen 381 TIRLWDIECGAC 392 (499)
T ss_pred eEEEEeccccHH
Confidence 999999976643
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.1e-19 Score=206.51 Aligned_cols=266 Identities=13% Similarity=0.177 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~ 113 (1043)
++.|..++|+|..-++.++-..|+|.+||-.-..++-.+ +|.+||+.+.|+|.+..+||++.|-.|+||+..+++++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 456888999999999999999999999997765555444 4678999999999999999999999999999999999999
Q ss_pred eecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 114 LKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 114 ~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
+.+| ..|..+.|.+.-.|++++++|.+|+||++....+ +. ...+|..-|+|.+|||.+ ..
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-ia----------------vltGHnHYVMcAqFhptE--Dl 149 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IA----------------VLTGHNHYVMCAQFHPTE--DL 149 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EE----------------EEecCceEEEeeccCCcc--ce
Confidence 9887 8899999999999999999999999999987432 11 113678889999999973 35
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCC---Ccc--cCcc--CCCCCCCCeEEEEEecCCCCEE
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS---TFL--EGIS--EHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g--~~~~--~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
+++++-|.+|++||+..-+......+ .+. +.+.+.+. -.| |.+- .-+.|+..|.-++|+ |.-..|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg---~~e----~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpli 221 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPG---SLE----DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLI 221 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCC---Cch----hhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceE
Confidence 99999999999999875332211111 000 00011110 011 1111 124478899999997 999999
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
++|+.|..|++|..+..+.=.. +.+ . .|-.+|.++-|. | ...++++.|.| ..++|
T Consensus 222 VSG~DDRqVKlWrmnetKaWEv---Dtc---------r-gH~nnVssvlfh-------p-~q~lIlSnsED----ksirV 276 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEV---DTC---------R-GHYNNVSSVLFH-------P-HQDLILSNSED----KSIRV 276 (1202)
T ss_pred EecCCcceeeEEEeccccceee---hhh---------h-cccCCcceEEec-------C-ccceeEecCCC----ccEEE
Confidence 9999999999999865431110 000 0 122345555332 2 23466676665 68999
Q ss_pred EEcCccc
Q 001621 346 LSLEWSS 352 (1043)
Q Consensus 346 ~~l~~~~ 352 (1043)
|++...+
T Consensus 277 wDm~kRt 283 (1202)
T KOG0292|consen 277 WDMTKRT 283 (1202)
T ss_pred Eeccccc
Confidence 9887544
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.8e-23 Score=214.10 Aligned_cols=268 Identities=15% Similarity=0.128 Sum_probs=190.9
Q ss_pred CccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEec
Q 001621 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 487 ~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~ 566 (1043)
.++.|+||+++|++|+.||.|.+||+.+|.++.-..++.+-..+ -+..+|.|+.||.|+.+||+|+.||.|+||.+.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fM---Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFM---MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhccee---ecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 35589999999999999999999999999865333333221111 244699999999999999999999999999998
Q ss_pred CCCcccceeeeccCCCceeeecCCCcceeeEEe-cCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC
Q 001621 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1043)
Q Consensus 567 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~ 645 (1043)
++... ..| .+|+..||||.||.|+..+.+++.|.+|++--+++++++....
T Consensus 294 tG~Cl-------------------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--- 345 (508)
T KOG0275|consen 294 TGQCL-------------------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--- 345 (508)
T ss_pred cchHH-------------------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---
Confidence 86422 223 4899999999999999999999999999999999999875432
Q ss_pred CCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEE-----
Q 001621 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAIS----- 720 (1043)
Q Consensus 646 ~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~----- 720 (1043)
+|++.|+...|.++| ..+++++.||+|.+|+..+++++++. .+.....++.
T Consensus 346 GHsSyvn~a~ft~dG----------------------~~iisaSsDgtvkvW~~KtteC~~Tf--k~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG----------------------HHIISASSDGTVKVWHGKTTECLSTF--KPLGTDYPVNSVILL 401 (508)
T ss_pred CccccccceEEcCCC----------------------CeEEEecCCccEEEecCcchhhhhhc--cCCCCcccceeEEEc
Confidence 477999999998665 34999999999999999999998776 2222222221
Q ss_pred ------EEEe---ccEEEEeeCcccCCC-cceee---ecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhh
Q 001621 721 ------MEVI---DSVRLYSRKSVIQGN-NKTVQ---KVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELV 787 (1043)
Q Consensus 721 ------~~v~---~~irl~~~~~~~~g~-~k~~~---k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~ 787 (1043)
+.|. +.+++.... |. .+.+. +..-++-||.. +|+|.|+.|++.||.+..|++-+-++-
T Consensus 402 PKnpeh~iVCNrsntv~imn~q----GQvVrsfsSGkREgGdFi~~~l-----SpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ----GQVVRSFSSGKREGGDFINAIL-----SPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc----ceEEeeeccCCccCCceEEEEe-----cCCCcEEEEEccCcEEEEEEeecCcee
Confidence 2222 666666542 21 11111 11112333332 699999999999999999999654432
Q ss_pred hhhccc--ceeeeeccCCCceeeEec-CCcEEEE
Q 001621 788 MESSLM--SILRWNFKANMDKTISAD-NGQITLA 818 (1043)
Q Consensus 788 ~~~~l~--~~~~~~~~~~~~~~i~~s-dg~~~l~ 818 (1043)
.-..++ ...+..++|+..-..+.| ||-.-||
T Consensus 473 ~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 473 RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred eeeecccccccccccCcccchhhhhcccchhhhc
Confidence 211221 122344455555555667 8876665
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=8.1e-21 Score=195.73 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=210.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
++.|..+.|+|+|.++++|+.|..|-+|+...+...+. ..++|.+.|+.|.|.+ +++.++++
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~----------------~lkgHsgAVM~l~~~~--d~s~i~S~ 108 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW----------------VLKGHSGAVMELHGMR--DGSHILSC 108 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEecccccccee----------------eeccccceeEeeeecc--CCCEEEEe
Confidence 48999999999999999999999999999665432221 1347889999999999 48889999
Q ss_pred ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC-EEEEEEcCCcEE
Q 001621 197 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDIL 275 (1043)
Q Consensus 197 ~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~-~l~tg~~DG~I~ 275 (1043)
+.|.+|+.||+++|+.++.+.. |..-|.+++-. .-|. .+.+|+.||+++
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~-----------------------------h~~~vNs~~p~-rrg~~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKG-----------------------------HTSFVNSLDPS-RRGPQLVCSGSDDGTLK 158 (338)
T ss_pred cCCceEEEEecccceeeehhcc-----------------------------ccceeeecCcc-ccCCeEEEecCCCceEE
Confidence 9999999999999998876543 25556666533 3444 566788899999
Q ss_pred EEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccc
Q 001621 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1043)
Q Consensus 276 iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~ 355 (1043)
+||+.+...++. + . +
T Consensus 159 l~D~R~k~~~~t-------------------------~--~------~-------------------------------- 173 (338)
T KOG0265|consen 159 LWDIRKKEAIKT-------------------------F--E------N-------------------------------- 173 (338)
T ss_pred EEeecccchhhc-------------------------c--c------c--------------------------------
Confidence 999865332210 0 0 0
Q ss_pred cceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCC
Q 001621 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1043)
Q Consensus 356 ~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 435 (1043)
+ |.
T Consensus 174 ------k----------------------------------------yq------------------------------- 176 (338)
T KOG0265|consen 174 ------K----------------------------------------YQ------------------------------- 176 (338)
T ss_pred ------c----------------------------------------ee-------------------------------
Confidence 0 00
Q ss_pred cceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCC
Q 001621 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1043)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~ 515 (1043)
+|++ .|...+.-.++|+-|+.|++||+..+
T Consensus 177 -ltAv-------------------------------------------------~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 177 -LTAV-------------------------------------------------GFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred -EEEE-------------------------------------------------EecccccceeeccccCceeeeccccC
Confidence 0011 11122234667788999999999887
Q ss_pred CceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCccee
Q 001621 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1043)
Q Consensus 516 ~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 595 (1043)
+ .++++ .||..+|+.|..+|+|..+.+-+.|.+|++||++..... ..|
T Consensus 207 d--~~~~l---------sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~---------------------~R~ 254 (338)
T KOG0265|consen 207 D--GLYTL---------SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS---------------------QRC 254 (338)
T ss_pred c--ceEEe---------ecccCceeeEEeccCCCccccccccceEEEEEecccCCC---------------------Cce
Confidence 6 34444 589999999999999999999999999999999864321 122
Q ss_pred eEEecCC--CCC--EEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCC
Q 001621 596 RAVFSLV--NSP--VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNH 671 (1043)
Q Consensus 596 ~~~l~~h--~~~--Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~ 671 (1043)
..++.+| .-. -...+|||++..+..|+.|..|.+||..+.+++|.. +++...|.++.|.+.
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~~Fhp~------------ 319 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEVDFHPT------------ 319 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCcceeEEEeeecCC------------
Confidence 2334443 222 345688999999999999999999999999998874 457789999999643
Q ss_pred CCCCCCCCCCceEEEEeccCceEEE
Q 001621 672 SEREVPVNPAEEVIIVLFKDAKISI 696 (1043)
Q Consensus 672 ~~~~~~~~~~~~~l~~gt~dg~I~~ 696 (1043)
..++.+++.|.+|++
T Consensus 320 ----------e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 320 ----------EPIILSCSSDKTIYL 334 (338)
T ss_pred ----------CcEEEEeccCceeEe
Confidence 356899999999986
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=4.2e-22 Score=216.73 Aligned_cols=201 Identities=15% Similarity=0.205 Sum_probs=164.4
Q ss_pred cccCCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCC-ceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDG-IEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~-~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
-.||+..|+++.|-| .+.||++|+.||.|+||++-. ..++.++. |..+|+.++|++++..+++++-|+.|++||++|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 369999999999999 889999999999999999743 56665554 577999999999999999999999999999999
Q ss_pred CceeEEeecCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 108 RSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 108 ~~~l~~~~~~~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
|+++..+.....++|+.|.|++ +.+++|+.|+.|+-|++.. +++.+ .| ..|.+.|..+.|-|
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvq-eY--------------d~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQ-EY--------------DRHLGAILDITFVD 352 (503)
T ss_pred ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--hHHHH-HH--------------HhhhhheeeeEEcc
Confidence 9999999999999999999999 7889999999998887654 33321 01 24678999999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
. |++++++++|++++||+.+..-.+..... .+ .-..-++.-+ |++.+++
T Consensus 353 ~--g~rFissSDdks~riWe~~~~v~ik~i~~------~~----------------------~hsmP~~~~~-P~~~~~~ 401 (503)
T KOG0282|consen 353 E--GRRFISSSDDKSVRIWENRIPVPIKNIAD------PE----------------------MHTMPCLTLH-PNGKWFA 401 (503)
T ss_pred C--CceEeeeccCccEEEEEcCCCccchhhcc------hh----------------------hccCcceecC-CCCCeeh
Confidence 4 88999999999999999988766543211 00 1223355554 9999999
Q ss_pred EEEcCCcEEEEcC
Q 001621 267 VGYIDGDILLWNT 279 (1043)
Q Consensus 267 tg~~DG~I~iWd~ 279 (1043)
+-+.|+.|.++.+
T Consensus 402 aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 402 AQSMDNYIAIFST 414 (503)
T ss_pred hhccCceEEEEec
Confidence 8888888877764
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=2.5e-21 Score=210.77 Aligned_cols=294 Identities=19% Similarity=0.246 Sum_probs=221.8
Q ss_pred ceeEEeecC-CCEEEEEEeC-CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 109 SLACCLKWE-SNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp-~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
+.++++..| ..|+++.|.| .+.++++++.|+.|+||++-.+++++.- | .+|..+|..++|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt--f--------------~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT--F--------------KGHRKPVRDASFNN 268 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh--h--------------hcchhhhhhhhccc
Confidence 345666655 6899999999 8999999999999999997665544431 1 35788999999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC-CEE
Q 001621 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SIL 265 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g-~~l 265 (1043)
+ |..+++++-|+.|++||+++|+++..+.. ...++|+.|+ |++ ..+
T Consensus 269 ~--g~~fLS~sfD~~lKlwDtETG~~~~~f~~------------------------------~~~~~cvkf~-pd~~n~f 315 (503)
T KOG0282|consen 269 C--GTSFLSASFDRFLKLWDTETGQVLSRFHL------------------------------DKVPTCVKFH-PDNQNIF 315 (503)
T ss_pred c--CCeeeeeecceeeeeeccccceEEEEEec------------------------------CCCceeeecC-CCCCcEE
Confidence 5 88999999999999999999999988742 5678899997 998 889
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
++|..|+.|+.||+.+++..+.
T Consensus 316 l~G~sd~ki~~wDiRs~kvvqe---------------------------------------------------------- 337 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKVVQE---------------------------------------------------------- 337 (503)
T ss_pred EEecCCCcEEEEeccchHHHHH----------------------------------------------------------
Confidence 9999999999999987653221
Q ss_pred EEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCcc
Q 001621 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1043)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~ 425 (1043)
||.
T Consensus 338 ---------------------------------------------------------Yd~-------------------- 340 (503)
T KOG0282|consen 338 ---------------------------------------------------------YDR-------------------- 340 (503)
T ss_pred ---------------------------------------------------------HHh--------------------
Confidence 000
Q ss_pred CCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCC
Q 001621 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1043)
Q Consensus 426 ~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~Dg 505 (1043)
|-..|.. + .|-++++.+++.++|+
T Consensus 341 -------hLg~i~~------------------------------------------------i-~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 341 -------HLGAILD------------------------------------------------I-TFVDEGRRFISSSDDK 364 (503)
T ss_pred -------hhhheee------------------------------------------------e-EEccCCceEeeeccCc
Confidence 0000000 0 2335566899999999
Q ss_pred cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCcee
Q 001621 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1043)
Q Consensus 506 tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~ 585 (1043)
+||||+...+.. +... ....-| ...+|...|++..++..+.|..+.+|.....-..
T Consensus 365 s~riWe~~~~v~--ik~i------~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-------------- 420 (503)
T KOG0282|consen 365 SVRIWENRIPVP--IKNI------ADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-------------- 420 (503)
T ss_pred cEEEEEcCCCcc--chhh------cchhhc--cCcceecCCCCCeehhhccCceEEEEeccccccc--------------
Confidence 999999988762 1110 011223 5678899999999999999999999986542111
Q ss_pred eecCCCcceeeEEecCCC--CCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCc
Q 001621 586 ALPEGKISLCRAVFSLVN--SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTH 663 (1043)
Q Consensus 586 ~~~~~~~~~~~~~l~~h~--~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~ 663 (1043)
.....|.+|. |--+.+.|||||++|++|+.||.|.+||.++-+++-.... +..+++.+.|-|..
T Consensus 421 --------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~wHP~e--- 486 (503)
T KOG0282|consen 421 --------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVDWHPVE--- 486 (503)
T ss_pred --------CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEEecCCC---
Confidence 0012356775 4467889999999999999999999999999888765443 56899999997643
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEeccCceEEEEc
Q 001621 664 SLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1043)
Q Consensus 664 ~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d 698 (1043)
+ ..+++++-||.|.+||
T Consensus 487 ----------------~--Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 ----------------P--SKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------------c--ceeEecccCceeEecC
Confidence 2 2389999999999997
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=5.5e-21 Score=196.75 Aligned_cols=215 Identities=15% Similarity=0.207 Sum_probs=172.2
Q ss_pred eeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc------------------eEEEe-cCCCCCeEEEEEecCC
Q 001621 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI------------------EGLLI-SPSQLPYKNLEFLQNQ 88 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~------------------~~~~~-~~~~~~V~~l~Fs~d~ 88 (1043)
-.....|.+.+.+.+|+|||.++|+|+.|..|+|+|+++. -++.+ ..|...|.+|.|.|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3334456667899999999999999999999999997621 01111 2356789999999999
Q ss_pred CEEEEEECCCcEEEEECCCCc---eeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccc
Q 001621 89 GFLISITNDNEIQVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t~~---~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~ 165 (1043)
..|++++.|++|+++|+.... ....++.-.+|.++.|.|.|+++++|++..+++++++.+-.+-+. ..|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----anP---- 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----ANP---- 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee----cCc----
Confidence 999999999999999997643 334445558999999999999999999999999998876432111 011
Q ss_pred ccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCC
Q 001621 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1043)
Q Consensus 166 ~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (1043)
...|.+.|++|.+++. |++.++|+.||.|+|||--+++++..++. ++
T Consensus 257 ------d~qht~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH----------------- 303 (430)
T KOG0640|consen 257 ------DDQHTGAITQVRYSST--GSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AH----------------- 303 (430)
T ss_pred ------ccccccceeEEEecCC--ccEEEEeccCCcEEeeccccHHHHHHHHh--------hc-----------------
Confidence 2357889999999995 88899999999999999999998877642 11
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 246 ~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
....|+++.|. .||++|++.+.|..+++|.+.+++.+.
T Consensus 304 --~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 304 --GGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred --CCceeeeEEEc-cCCeEEeecCCcceeeeeeecCCceEE
Confidence 15679999997 999999999999999999998886544
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=7.1e-20 Score=185.74 Aligned_cols=215 Identities=15% Similarity=0.192 Sum_probs=177.0
Q ss_pred eecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 29 ~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
....||.-.++-+.|+.+|.||.+++.|.++.||-..++|++.+.. |+..|+++....+..+|+++++|+++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4557999999999999999999999999999999998889887765 678999999999999999999999999999999
Q ss_pred CceeEEeecCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEEEeCCCCeE-eeece-eecccccccccCCCCCCCCCeE
Q 001621 108 RSLACCLKWESNITAFSVISGSHFMYIGDEN-----GLMSVIKYDADEGKL-FQLPY-NISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 108 ~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~d-----G~v~v~~~d~~~~~l-~~~~~-~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
|+++.++..+..|..+.|+++|+++++.+++ +.|.++++..+.... ...|| +|+ .+.+.++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~------------t~~skit 151 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP------------TPDSKIT 151 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec------------CCcccee
Confidence 9999999999999999999999998877764 456666654322111 11122 222 2347889
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecC
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1043)
...|.|. +..+++|.++|.|..||+++++.+..-. ..|...|+.++++ |
T Consensus 152 ~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~----------------------------~~h~~~Ind~q~s-~ 200 (327)
T KOG0643|consen 152 SALWGPL--GETIIAGHEDGSISIYDARTGKELVDSD----------------------------EEHSSKINDLQFS-R 200 (327)
T ss_pred eeeeccc--CCEEEEecCCCcEEEEEcccCceeeech----------------------------hhhcccccccccc-C
Confidence 9999996 7779999999999999999986543211 1246789999996 9
Q ss_pred CCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 261 SGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 261 ~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
+..+++|++.|.+-++||..+-..+.
T Consensus 201 d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred CcceEEecccCccceeeeccceeeEE
Confidence 99999999999999999998765544
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.8e-20 Score=210.15 Aligned_cols=147 Identities=16% Similarity=0.278 Sum_probs=116.9
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeecee
Q 001621 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1043)
Q Consensus 81 ~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~ 159 (1043)
-+.|+..+ +++++-...|.+|+..++........ ...|+++.++++|.+|++|..+|.|.+|+..... .
T Consensus 182 lldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------~ 251 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------K 251 (484)
T ss_pred HhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--------c
Confidence 34577554 77777788999999999986655555 6899999999999999999999999999865421 1
Q ss_pred ecccccccccCCCCC-CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCc
Q 001621 160 ISADALSEKAGFPLL-SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1043)
Q Consensus 160 i~~~~~~~~~~~~~~-~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1043)
++ .... |...|.+++|+. ..+.+|+.+|.|..+|++..+..... +
T Consensus 252 ~~---------~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~~------~--------------- 297 (484)
T KOG0305|consen 252 TR---------TLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVST------L--------------- 297 (484)
T ss_pred cc---------cccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhhhhh------h---------------
Confidence 11 1123 778999999995 35899999999999999876543220 1
Q ss_pred ccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
..|..+|+.+.|+ +|+.++|+|+.|+.+.+||.
T Consensus 298 -------~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 298 -------QGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred -------hcccceeeeeEEC-CCCCeeccCCCccceEeccC
Confidence 1148899999996 99999999999999999998
No 62
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=8.2e-19 Score=197.26 Aligned_cols=537 Identities=13% Similarity=0.124 Sum_probs=276.4
Q ss_pred EEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEe--CCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 91 LISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~--~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
|++--+...|.++|....+.-+-+..+ ..++|++|+++|+|+++|- ....++||++.... .+.
T Consensus 51 l~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-vVA------------- 116 (1080)
T KOG1408|consen 51 LCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-VVA------------- 116 (1080)
T ss_pred ceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-chh-------------
Confidence 444455667888998877665555433 6899999999999999986 45668999876521 000
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEEEC--CCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~--dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (1043)
....|.-.|++++|+|. ++++++.+. |..|.+||++.+.....- +
T Consensus 117 ---EfvdHKY~vtcvaFsp~--~kyvvSVGsQHDMIVnv~dWr~N~~~asn---------k------------------- 163 (1080)
T KOG1408|consen 117 ---EFVDHKYNVTCVAFSPG--NKYVVSVGSQHDMIVNVNDWRVNSSGASN---------K------------------- 163 (1080)
T ss_pred ---hhhhccccceeeeecCC--CcEEEeeccccceEEEhhhhhhccccccc---------c-------------------
Confidence 11245667999999995 676665443 557889998765432110 0
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCC-cceEEEEeecCCCCCCC
Q 001621 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR-LPVIVLHWSTNKESRSN 324 (1043)
Q Consensus 246 ~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~-~~i~~l~w~~~~~~~~~ 324 (1043)
-...|+.++|+ .+|.+++|.+ ...|++|.+..+....+ ..|+..-..-.+..+ .....+ .|.. .-
T Consensus 164 --iss~Vsav~fs-EdgSYfvT~g-nrHvk~wyl~~~~Kykd-----piPl~gRs~~lg~lr~n~f~av--aCg~---gi 229 (1080)
T KOG1408|consen 164 --ISSVVSAVAFS-EDGSYFVTSG-NRHVKLWYLQIQSKYKD-----PIPLPGRSYFLGNLRFNEFLAV--ACGV---GI 229 (1080)
T ss_pred --cceeEEEEEEc-cCCceeeeee-eeeEEEEEeeccccccC-----Cccccchhhhccccccchhhhh--hhcC---cc
Confidence 15678999996 9999999886 47899999977653221 011110000000000 000001 1111 00
Q ss_pred CCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEee
Q 001621 325 IDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYD 404 (1043)
Q Consensus 325 ~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d 404 (1043)
.....++..... +.+ +++. -+-.-++. ......+..+.+ ....+++.+..|.+.+|+
T Consensus 230 cAestfait~qG----hLv-----EFSs----RRLLDKWV-qcRTTnAnCIcV---------s~r~I~cgCa~g~vrlFn 286 (1080)
T KOG1408|consen 230 CAESTFAITAQG----HLV-----EFSS----RRLLDKWV-QCRTTNANCICV---------SSRLIACGCAKGMVRLFN 286 (1080)
T ss_pred cccceEEEeccc----cee-----eech----hhhhhhhh-hhhccccceeee---------ecceEEEeeccceeeecC
Confidence 000111111000 000 0110 00000000 000001111111 112366677888888776
Q ss_pred cccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCC
Q 001621 405 NASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1043)
Q Consensus 405 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~ 484 (1043)
..++ .+.-.+|..+.--+-+ ....+ ..++... +-.+-.+-
T Consensus 287 p~tL----------------~y~~Tlpr~halg~d~-------------------a~~~q-~~~~~s~----~~~a~fPD 326 (1080)
T KOG1408|consen 287 PETL----------------DYAGTLPRSHALGSDT-------------------ANLSQ-PEPKNSE----SSPAIFPD 326 (1080)
T ss_pred cchh----------------hhccccccccccccch-------------------hhccc-ccccccc----cCcccCCc
Confidence 4333 2222222111000000 00000 0010000 00111111
Q ss_pred CCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEec-----------CCCeEEE
Q 001621 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-----------INSSLAV 553 (1043)
Q Consensus 485 ~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fsp-----------d~~~La~ 553 (1043)
...+ .|.+..+.|..-+.|.+++|||+....-- -... .+--|+.-|+.|.--| --..+.+
T Consensus 327 ~IA~-~Fdet~~klscVYndhSlYvWDvrD~~kv-gk~~-------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~T 397 (1080)
T KOG1408|consen 327 AIAC-QFDETTDKLSCVYNDHSLYVWDVRDVNKV-GKCS-------SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTT 397 (1080)
T ss_pred eeEE-EecCCCceEEEEEcCceEEEEeccccccc-ccee-------eeeeccceeeeeccccccccCcccccCCccceeE
Confidence 1123 58888999999999999999999876410 0000 0112222333332222 0124789
Q ss_pred EecCccEEEEEecCCCcccc------------eeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEE
Q 001621 554 GNEFGLVYIYNLNGSLDAKN------------FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1043)
Q Consensus 554 g~~dG~V~i~~~~~~~~~~~------------~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~G 621 (1043)
++.||+||+|++....+... ..+...+.+-+++...+-.-..........-.|.||+.||+|++||+|
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG 477 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG 477 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc
Confidence 99999999999976321100 000001111111111110001112233455679999999999999999
Q ss_pred eCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 622 FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 622 s~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
...|+++|+|+...+.+..+.. |.+.|.+|.|+.-. ....+|++++.|.-|.++|+..
T Consensus 478 Dr~GnlrVy~Lq~l~~~~~~eA---HesEilcLeyS~p~-------------------~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 478 DRGGNLRVYDLQELEYTCFMEA---HESEILCLEYSFPV-------------------LTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CccCceEEEEehhhhhhhheec---ccceeEEEeecCch-------------------hhhHhhhhccCCceEEEEeccc
Confidence 9999999999998777655443 77999999998311 1124589999999999999765
Q ss_pred CC-eeecCCCCcCCCceeEEEEEecc--EEEEeeCcccCCCcceee-----e---cc-cCC--cceeEEeeee---ccee
Q 001621 702 EN-MISSSPWHLKKKVIAISMEVIDS--VRLYSRKSVIQGNNKTVQ-----K---VK-HKN--RCCWASTIEK---DEKV 764 (1043)
Q Consensus 702 g~-~l~~~~~~~~~~~~a~~~~v~~~--irl~~~~~~~~g~~k~~~-----k---~~-~~~--~~~~~~~~~~---~~~~ 764 (1043)
.. ++++ +.....++...-|+.+. .+..++ |+-|.+. | .. +.. +-..-+++|. ++.-
T Consensus 536 ny~l~qt--ld~HSssITsvKFa~~gln~~Misc-----GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 536 NYDLVQT--LDGHSSSITSVKFACNGLNRKMISC-----GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred ccchhhh--hcccccceeEEEEeecCCceEEEec-----cCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 43 2222 22212222222222211 233333 3222211 0 00 000 1111122222 6777
Q ss_pred EEEEEEEeeCcEEEEeCCChhhhhh
Q 001621 765 CGLLLLFQTGAVQIRSLPDLELVME 789 (1043)
Q Consensus 765 ~~Lv~~~~dG~i~i~slp~l~~~~~ 789 (1043)
..++++.+|..||||.+.+-+..+-
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred ceEEEEecccceEEEeccccceeee
Confidence 8899999999999999987776543
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=6.4e-20 Score=194.30 Aligned_cols=146 Identities=17% Similarity=0.269 Sum_probs=119.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccce
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~ 574 (1043)
...+++++.|.|||.||+.++... ..+. -+.+.++++.+|...+||+|+.|..+|+||.+.+..-
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~--~~~~----------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--- 335 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLK--STLT----------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--- 335 (423)
T ss_pred CCceEeecccceEEEEEeecccce--eeee----------cCcceeEeecccccceeeecCCCCceeecCCCCCCCc---
Confidence 457899999999999999998732 2221 1247999999999999999999999999999875321
Q ss_pred eeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCC-cEEEEEeCCCeEEEEEcCCce-EEEEeecCCCCCCCeE
Q 001621 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPII 652 (1043)
Q Consensus 575 ~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg-~~lA~Gs~dg~V~vwD~~~~~-~l~~~~~~~~~~~~V~ 652 (1043)
...+.|.+|+.-|+++.|||.. .++++|+.|+++++||+|+.. .+|.+.- +...|.
T Consensus 336 -------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl 393 (423)
T KOG0313|consen 336 -------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVL 393 (423)
T ss_pred -------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEE
Confidence 1234578999999999999965 569999999999999999987 7777644 678899
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCC
Q 001621 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1043)
Q Consensus 653 sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~ 700 (1043)
++.|.. +.++++|+.|.+|+++...
T Consensus 394 ~vdW~~-----------------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWNE-----------------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccC-----------------------CceEEeccCcceEEEeccc
Confidence 999962 2459999999999998753
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=8.5e-18 Score=189.96 Aligned_cols=563 Identities=14% Similarity=0.143 Sum_probs=316.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEE-ecCCCCCeEEEEEecCCC---EEEEEECCCcEEEEECCCC
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQG---FLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~-~~~~~~~V~~l~Fs~d~~---~Lvs~s~d~~I~vWdl~t~ 108 (1043)
|..-.....++. -+.++|.|+. ..|.+||........ .-.|..+|+++.|.|... ++++++.|++|.+|.++..
T Consensus 12 gc~R~~~v~sw~-~~~~vafGa~-~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~ 89 (764)
T KOG1063|consen 12 GCNRVPKVSSWG-PGGLVAFGAG-PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE 89 (764)
T ss_pred cccccccccccc-ccceEEecCC-ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh
Confidence 443333334453 3456777754 578899976553333 344678999999999876 8999999999999999955
Q ss_pred ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
...+....+ ..+.++++......+.....++.+++|+...++--+.. ..++.. + .--..|+++.|+
T Consensus 90 ~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~-~~rf~~----k--------~~ipLcL~~~~~ 156 (764)
T KOG1063|consen 90 YLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA-VLRFEI----K--------EAIPLCLAALKN 156 (764)
T ss_pred heEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh-heehhh----h--------hHhhHHHhhhcc
Confidence 544433333 24555555544444444468999999987443211110 111110 0 011255666663
Q ss_pred CCCCEEE-EEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC--CE
Q 001621 188 SSGNRVL-IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SI 264 (1043)
Q Consensus 188 d~g~~ll-~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g--~~ 264 (1043)
.+..++ .|+.+..|.++.-..++...... ++ .|...|.++.|..+.+ .+
T Consensus 157 -~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e-----l~----------------------GH~DWIrsl~f~~~~~~~~~ 208 (764)
T KOG1063|consen 157 -NKTFLLACGGSKFVVDLYSSSADSFARVAE-----LE----------------------GHTDWIRSLAFARLGGDDLL 208 (764)
T ss_pred -CCcEEEEecCcceEEEEeccCCcceeEEEE-----ee----------------------ccchhhhhhhhhccCCCcEE
Confidence 455444 45566677888766554332221 11 1478899999973333 37
Q ss_pred EEEEEcCCcEEEEcCCCCCcccc------ccCCCCCcc--------eeeeccc--ccCCcceEEEEeecCCCCCCCCCce
Q 001621 265 LAVGYIDGDILLWNTSTTASTKG------QQTGSRNNV--------VKLELSS--AERRLPVIVLHWSTNKESRSNIDGR 328 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~tg~~~~~------~~~~~~~~i--------~~l~~~~--~~~~~~i~~l~w~~~~~~~~~~~~~ 328 (1043)
|++++.|..||+|.+.-+..... .+.-.+.+. +++.+.. ..|..-|.++.|. |+.-.
T Consensus 209 laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-------p~~~~ 281 (764)
T KOG1063|consen 209 LASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-------PEGLD 281 (764)
T ss_pred EEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-------cchhh
Confidence 88999999999999854432210 000011111 1111111 1356688889884 33344
Q ss_pred EEEecCCCCCCcceEEEEEcCcccccccceeeeeEeec--CCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecc
Q 001621 329 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT--LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNA 406 (1043)
Q Consensus 329 llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~--~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~ 406 (1043)
||.+.. | ..+-+|.-+..++.. .+..++.-- ..+.+-+....|.. ..++.-...|-++.|...
T Consensus 282 LLSASa-D----ksmiiW~pd~~tGiW--v~~vRlGe~gg~a~GF~g~lw~~n~--------~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 282 LLSASA-D----KSMIIWKPDENTGIW--VDVVRLGEVGGSAGGFWGGLWSPNS--------NVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred heeccc-C----cceEEEecCCccceE--EEEEEeecccccccceeeEEEcCCC--------CEEEEecccCcEEEEecc
Confidence 554443 3 456666544332211 011111000 00111111111110 011111222333333200
Q ss_pred cceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCC
Q 001621 407 SLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV 486 (1043)
Q Consensus 407 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~ 486 (1043)
+ . ..|.. .+ .+.||+..++
T Consensus 347 -----------------------------------------d-~--~~w~~---------~~--------~iSGH~~~V~ 365 (764)
T KOG1063|consen 347 -----------------------------------------D-K--TFWTQ---------EP--------VISGHVDGVK 365 (764)
T ss_pred -----------------------------------------C-c--cceee---------cc--------ccccccccce
Confidence 0 0 00110 00 2567777777
Q ss_pred CccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEec
Q 001621 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 487 ~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~ 566 (1043)
.+ .++|.|.+|+|.|.|-|-|++-.-..+ ..-+.+ .. .--|....+|++|-+....+++|.+...+|+|+..
T Consensus 366 dv-~W~psGeflLsvs~DQTTRlFa~wg~q-~~wHEi----aR--PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 366 DV-DWDPSGEFLLSVSLDQTTRLFARWGRQ-QEWHEI----AR--PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ee-eecCCCCEEEEeccccceeeecccccc-cceeee----cc--cccccccceeeehccCCceeeecccceeeeeecCc
Confidence 77 789999999999999999998554222 111111 10 11344589999999877788999999999999875
Q ss_pred CCC-----------cccc---------------ee-eec---cCCCc---------------eeeecCCCcceee-----
Q 001621 567 GSL-----------DAKN---------------FL-FVL---ETKSE---------------VHALPEGKISLCR----- 596 (1043)
Q Consensus 567 ~~~-----------~~~~---------------~~-f~~---~~~~~---------------~~~~~~~~~~~~~----- 596 (1043)
..- ..+. .+ +.+ ++.++ +..-...+.++..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 320 0000 00 000 00000 0000000111110
Q ss_pred -EEecCCCCCEEEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCC
Q 001621 597 -AVFSLVNSPVRALQFTSSGAKLAVGFECG-----RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1043)
Q Consensus 597 -~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg-----~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~ 670 (1043)
..+-+|.-.|+||+.||+|.++|++.... .|++|...+-..+..+. +|+-.|++|+||++
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l~FSpd----------- 583 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVTRLAFSPD----------- 583 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEEEEEECCC-----------
Confidence 22568999999999999999999998754 48999998876665432 36678999999754
Q ss_pred CCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccCC
Q 001621 671 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKN 750 (1043)
Q Consensus 671 ~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~ 750 (1043)
+.+|++.+.|.++.+|....+...... |.. .|... .+-=
T Consensus 584 -----------g~~LLsvsRDRt~sl~~~~~~~~~e~~---------------------fa~-------~k~Ht--RIIW 622 (764)
T KOG1063|consen 584 -----------GRYLLSVSRDRTVSLYEVQEDIKDEFR---------------------FAC-------LKAHT--RIIW 622 (764)
T ss_pred -----------CcEEEEeecCceEEeeeeecccchhhh---------------------hcc-------ccccc--eEEE
Confidence 578999999999999997554322111 000 00000 0112
Q ss_pred cceeEEeeeecceeEEEEEEEeeCcEEEEeCCCh--hhhhhh
Q 001621 751 RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDL--ELVMES 790 (1043)
Q Consensus 751 ~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l--~~~~~~ 790 (1043)
-|.| +|++.+++++++|.+|.+|..|++ +-+.+.
T Consensus 623 dcsW------~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 623 DCSW------SPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred Eccc------CcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 4666 456777999999999999999999 555553
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-19 Score=181.08 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=129.6
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
.|..|++.+.|..+|..|++++.|.++.||--..|+.+.++..| +.|+|+.++-+.+++++|+.|.++++|++.....
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-
Confidence 46789999999999999999999999999999999999999977 8999999999999999999999999999877432
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-----CCeEEEEEccCCe-------EEEEeCCcc
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSEAQ-------IIFVGGGKD 220 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-----dg~I~lWd~~~~~-------~~~~~~~~~ 220 (1043)
+. .++ -..+|..+.|++. |+++++..+ .+.|.++|++... +...+.
T Consensus 87 la----~~k-------------~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--- 144 (327)
T KOG0643|consen 87 LA----TWK-------------TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--- 144 (327)
T ss_pred EE----Eee-------------cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---
Confidence 22 111 1368999999995 776666554 3578899988432 122211
Q ss_pred cccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
.++..++++.|. |-+..|++|++||.|..||+.+|
T Consensus 145 --------------------------t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 145 --------------------------TPDSKITSALWG-PLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred --------------------------CCccceeeeeec-ccCCEEEEecCCCcEEEEEcccC
Confidence 125778999996 99999999999999999999765
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.3e-20 Score=183.35 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=116.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
.+..++++|+.|.+||+||-.+...+|+..+.. ....|.+|..+ ..+++.|+.||+||.||+..+...
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~- 178 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS- 178 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhh---------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-
Confidence 334589999999999999999988888776642 23468877775 568999999999999999875311
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEE--EEeecCCCCCCC
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL--FFTDDISGSSSP 650 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l--~~~~~~~~~~~~ 650 (1043)
-.....||+|+.||+||..+.+|+.|++++++|-.+++++ |..+. ....
T Consensus 179 --------------------------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk---n~ey 229 (307)
T KOG0316|consen 179 --------------------------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK---NMEY 229 (307)
T ss_pred --------------------------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc---ccee
Confidence 1335668999999999999999999999999999999887 33222 1122
Q ss_pred eEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecC
Q 001621 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1043)
Q Consensus 651 V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~ 708 (1043)
=...+|.+ ....+++|++||.|++||...+.++...
T Consensus 230 kldc~l~q----------------------sdthV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 230 KLDCCLNQ----------------------SDTHVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eeeeeecc----------------------cceeEEeccCCceEEEEEeccceeeeee
Confidence 22333322 2355999999999999999998877655
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=5.3e-21 Score=197.34 Aligned_cols=166 Identities=16% Similarity=0.256 Sum_probs=140.8
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec---------CCCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001621 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW---------ESNITAFSVISGSHFMYIGDENGLMSV 143 (1043)
Q Consensus 73 ~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~---------~~~Vtav~~sp~~~~l~vG~~dG~v~v 143 (1043)
+..+.-+.+..|+||+.||++++.||.|.|||..+|++-.-++. +..|.|+.|+.|...+++|+.||.|+|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 33456788899999999999999999999999999987655532 368999999999999999999999999
Q ss_pred EEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCccccc
Q 001621 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1043)
Q Consensus 144 ~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~ 223 (1043)
|.+.+..+ +. .+.++|...|+++.|+.+ +.++++++-|.++++.-+++|+++..+.+
T Consensus 290 Wri~tG~C--------lR--------rFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSGK~LKEfrG----- 346 (508)
T KOG0275|consen 290 WRIETGQC--------LR--------RFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLKSGKCLKEFRG----- 346 (508)
T ss_pred EEEecchH--------HH--------HhhhhhccCeeEEEEccC--cchhhcccccceEEEeccccchhHHHhcC-----
Confidence 99877422 11 023567889999999984 66799999999999999999998876654
Q ss_pred ccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
|..-|+.+.|. ++|.+|++++.||+|++|+..+.++..
T Consensus 347 ------------------------HsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 347 ------------------------HSSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred ------------------------ccccccceEEc-CCCCeEEEecCCccEEEecCcchhhhh
Confidence 36778899997 999999999999999999999887654
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=2.1e-19 Score=190.40 Aligned_cols=211 Identities=15% Similarity=0.184 Sum_probs=158.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECCCCce
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQ---GFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~---~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
|..-|+++.-. ++.+.+|+.||.++||+..+........|.++|+.+++..-. ..+++++.|.++++|-++.+..
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 33445554443 689999999999999999988877777788999988876432 3599999999999999988764
Q ss_pred eEE----eec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCC-eEeeeceeecc---ccccc------ccCCCCCC
Q 001621 111 ACC----LKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISA---DALSE------KAGFPLLS 175 (1043)
Q Consensus 111 l~~----~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~-~l~~~~~~i~~---~~~~~------~~~~~~~~ 175 (1043)
.-. -.+ +..|-++.+.+++..+++|+-|.+|.+|+...+.. .+.. ..-.. ....+ .+....+|
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~--~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES--SSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccc--cchhhhhhhhhhhcccccCceEEeccc
Confidence 321 123 47899999999999999999999999999332211 1110 00000 00000 00112468
Q ss_pred CCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 176 ~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
..+|.+|.|++. + .+.+++.|.+|+.||+.++..+..+.. .+...|+
T Consensus 260 t~~Vs~V~w~d~--~-v~yS~SwDHTIk~WDletg~~~~~~~~------------------------------~ksl~~i 306 (423)
T KOG0313|consen 260 TEPVSSVVWSDA--T-VIYSVSWDHTIKVWDLETGGLKSTLTT------------------------------NKSLNCI 306 (423)
T ss_pred ccceeeEEEcCC--C-ceEeecccceEEEEEeecccceeeeec------------------------------CcceeEe
Confidence 999999999983 4 589999999999999999988766533 6778999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
.++ |....|++|+.|..|++||..++
T Consensus 307 ~~~-~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 307 SYS-PLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ecc-cccceeeecCCCCceeecCCCCC
Confidence 996 99999999999999999998654
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=195.37 Aligned_cols=287 Identities=18% Similarity=0.235 Sum_probs=204.2
Q ss_pred CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEE
Q 001621 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1043)
Q Consensus 175 ~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~s 254 (1043)
...+|.+|+|+|.+..+ ++++++- .+.||+..+......+-. . ...|.+
T Consensus 25 e~~~vssl~fsp~~P~d-~aVt~S~-rvqly~~~~~~~~k~~sr-------F----------------------k~~v~s 73 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYD-FAVTSSV-RVQLYSSVTRSVRKTFSR-------F----------------------KDVVYS 73 (487)
T ss_pred ccCcceeEecCCCCCCc-eEEeccc-EEEEEecchhhhhhhHHh-------h----------------------ccceeE
Confidence 46789999999985554 6665544 568999877655443211 0 567999
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecC
Q 001621 255 LCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGG 334 (1043)
Q Consensus 255 l~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg 334 (1043)
++|. .||..+++|.+.|.|+++|+.+...... + ..+..|+..++| .|.+..+|++|+
T Consensus 74 ~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~-----------~----~ah~apv~~~~f-------~~~d~t~l~s~s 130 (487)
T KOG0310|consen 74 VDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQ-----------L----YAHQAPVHVTKF-------SPQDNTMLVSGS 130 (487)
T ss_pred EEee-cCCeEEEccCCcCcEEEeccccHHHHHH-----------H----hhccCceeEEEe-------cccCCeEEEecC
Confidence 9996 8999999999999999999654211110 0 124557777766 456778888888
Q ss_pred CCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeeccc
Q 001621 335 DEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQ 414 (1043)
Q Consensus 335 ~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~ 414 (1043)
++ ..+.+|++... . + .+
T Consensus 131 Dd----~v~k~~d~s~a---------------------------------------~--------v-~~----------- 147 (487)
T KOG0310|consen 131 DD----KVVKYWDLSTA---------------------------------------Y--------V-QA----------- 147 (487)
T ss_pred CC----ceEEEEEcCCc---------------------------------------E--------E-EE-----------
Confidence 76 34555543200 0 0 01
Q ss_pred CCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCC
Q 001621 415 QEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV 494 (1043)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~ 494 (1043)
.+..|...|.|.++. +..
T Consensus 148 --------------~l~~htDYVR~g~~~------------------------------------------------~~~ 165 (487)
T KOG0310|consen 148 --------------ELSGHTDYVRCGDIS------------------------------------------------PAN 165 (487)
T ss_pred --------------EecCCcceeEeeccc------------------------------------------------cCC
Confidence 122244444443332 123
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccce
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~ 574 (1043)
+.+++|||.||+||+||+.... ..+..+ .|..||..|.|=|.|..+|+++.. .|+|||+.++...
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~-~~v~el----------nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql--- 230 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLT-SRVVEL----------NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL--- 230 (487)
T ss_pred CeEEEecCCCceEEEEEeccCC-ceeEEe----------cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee---
Confidence 4489999999999999998764 233333 466799999999999999988764 7999999864322
Q ss_pred eeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEE
Q 001621 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1043)
Q Consensus 575 ~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 654 (1043)
...+..|...||||++..++..|.+|+-||.|++||+.+-++++...+ ++||.++
T Consensus 231 ---------------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsi 285 (487)
T KOG0310|consen 231 ---------------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSI 285 (487)
T ss_pred ---------------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----ccceeeE
Confidence 112344999999999999999999999999999999999999998765 7999999
Q ss_pred EEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 655 ~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
+.++.+ ..+++|..||-+.+-+...+
T Consensus 286 avs~dd----------------------~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 286 AVSPDD----------------------QTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EecCCC----------------------ceEEEecccceeeeehhhcc
Confidence 997533 45999999999988754443
No 70
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.5e-17 Score=182.01 Aligned_cols=459 Identities=16% Similarity=0.197 Sum_probs=285.5
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEeec--CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-CCLKW--ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l-~~~~~--~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
..+|.+|+|+...+.|+.+=++|.|.+||+...=.+ ..+.. ...|.++++++. ..|++.+-+|+|.-|++-.. +
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~l--k 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTL--K 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccC--c
Confidence 468999999999899999999999999999886433 23333 378999999955 45666677898888876542 2
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCC
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1043)
.. |.+. ...++|++++.+|. ++.+++|++||.+.+++...+++....-. .+
T Consensus 102 ~~---~~~d------------~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~~p~~I~~~r~l----~r-------- 152 (691)
T KOG2048|consen 102 QK---YNID------------SNGGAIWSIAINPE--NTILAIGCDDGVLYDFSIGPDKITYKRSL----MR-------- 152 (691)
T ss_pred ee---EEec------------CCCcceeEEEeCCc--cceEEeecCCceEEEEecCCceEEEEeec----cc--------
Confidence 21 3322 23578999999995 67799999999877888777776543311 00
Q ss_pred CCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEE
Q 001621 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1043)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~ 312 (1043)
....|.++.|+ |++.+|++|+.||.|++||..++.... +..
T Consensus 153 ---------------q~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-----------------------~~~ 193 (691)
T KOG2048|consen 153 ---------------QKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLH-----------------------IIT 193 (691)
T ss_pred ---------------ccceEEEEEec-CCccEEEecccCceEEEEEcCCCceEE-----------------------Eee
Confidence 15789999997 999999999999999999987653211 000
Q ss_pred EEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEE
Q 001621 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1043)
Q Consensus 313 l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~ 392 (1043)
+ .+..+
T Consensus 194 ~------------------------------~~d~l-------------------------------------------- 199 (691)
T KOG2048|consen 194 M------------------------------QLDRL-------------------------------------------- 199 (691)
T ss_pred e------------------------------ccccc--------------------------------------------
Confidence 0 00000
Q ss_pred EEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccC
Q 001621 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1043)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 472 (1043)
.......+|. +.+
T Consensus 200 --~k~~~~iVWS-----------------------------------v~~------------------------------ 212 (691)
T KOG2048|consen 200 --SKREPTIVWS-----------------------------------VLF------------------------------ 212 (691)
T ss_pred --ccCCceEEEE-----------------------------------EEE------------------------------
Confidence 0000000111 000
Q ss_pred cccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEE
Q 001621 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1043)
Q Consensus 473 ~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La 552 (1043)
-.+ ..+|+|-.-|+|.+||...+.+.. . ..-|...|.||+.+++..++.
T Consensus 213 -------------------Lrd-~tI~sgDS~G~V~FWd~~~gTLiq--S---------~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 213 -------------------LRD-STIASGDSAGTVTFWDSIFGTLIQ--S---------HSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred -------------------eec-CcEEEecCCceEEEEcccCcchhh--h---------hhhhhcceeEEEEcCCCCeEE
Confidence 011 268888889999999999987321 1 235677899999999999999
Q ss_pred EEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 553 ~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
+++.|+.|.-|...++..+ .+ .......|...|.+++..++ .+.+|+.|+++.+--.
T Consensus 262 saGvd~~ii~~~~~~~~~~----wv-----------------~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSE----WV-----------------INSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred EccCCCceEEEEecCCccc----ee-----------------eeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 9999999999998776431 00 00113568888999999988 7999999999998887
Q ss_pred CCceEE-EE---eecCCC--CCCCeEEEE--EEeecCCccccCCCCCCCCCCCCCCCceEEEEec-cCceEEEEcCCCCC
Q 001621 633 NLLSVL-FF---TDDISG--SSSPIISMT--WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIVGGSSEN 703 (1043)
Q Consensus 633 ~~~~~l-~~---~~~~~~--~~~~V~sl~--fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt-~dg~I~~~d~~~g~ 703 (1043)
+.-... |. .+.... ...+...+- |.+++ ..+|-.+.. ...|. +.-+++-+.....+
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~----v~lwrlGS~-----------~~~g~~~~~~Llkl~~k~~~ 383 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHG----VDLWRLGSV-----------ILQGEYNYIHLLKLFTKEKE 383 (691)
T ss_pred cccCchhhhccccccccceeecCccceEEEEecccc----ccceeccCc-----------ccccccChhhheeeecCCcc
Confidence 652221 11 111000 112222222 22221 122221111 11110 12334444445555
Q ss_pred eeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeee--cccC-CcceeEEeeeecceeEEEEEEE-eeCcEEEE
Q 001621 704 MISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQK--VKHK-NRCCWASTIEKDEKVCGLLLLF-QTGAVQIR 779 (1043)
Q Consensus 704 ~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k--~~~~-~~~~~~~~~~~~~~~~~Lv~~~-~dG~i~i~ 779 (1043)
.+..+..+|..+.+++.+. ...+||++... +..|.... .++. -..|.+.+ +.++.-|+... ..+.++++
T Consensus 384 nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~--~~vk~~~v~~~~~~~~~a~~i~f---tid~~k~~~~s~~~~~le~~ 456 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTV--SRTKIYRLQPD--PNVKVINVDDVPLALLDASAISF---TIDKNKLFLVSKNIFSLEEF 456 (691)
T ss_pred ceeeeccCCCCCEEEEeec--cceEEEEeccC--cceeEEEeccchhhhccceeeEE---EecCceEEEEecccceeEEE
Confidence 6666667787766665544 78889988542 23333332 2222 23344433 33455555555 77888888
Q ss_pred eC--CChhhhhhhcccceeeeeccCCCceeeEec-CCcEEEEcc--ceeEEEEe
Q 001621 780 SL--PDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG--SEVAFVNL 828 (1043)
Q Consensus 780 sl--p~l~~~~~~~l~~~~~~~~~~~~~~~i~~s-dg~~~l~~g--~e~~~~s~ 828 (1043)
.+ |+-+++...+-.. +-+.+..|..| ||+.|.+.+ ..++++++
T Consensus 457 el~~ps~kel~~~~~~~------~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQA------KCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred EecCcchhhhhcccccc------CCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 66 6666665443321 22445666667 999998887 66666666
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=2.8e-20 Score=198.83 Aligned_cols=284 Identities=16% Similarity=0.214 Sum_probs=209.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
.+.|..+.|-++.+.+++|+.|..|++|+...++..+.. ...+..++|+++.|.+. ++.++++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~---------------tLaGs~g~it~~d~d~~--~~~~iAa 237 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIS---------------TLAGSLGNITSIDFDSD--NKHVIAA 237 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhh---------------hhhccCCCcceeeecCC--CceEEee
Confidence 478999999999999999999999999998775422221 11234678999999984 7789999
Q ss_pred ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001621 197 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1043)
Q Consensus 197 ~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~i 276 (1043)
+.|+.+++|++.+.+....+.+ |...|+++.|. .....+++|+.|.+|+.
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsG-----------------------------HtdkVt~ak~~-~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSG-----------------------------HTDKVTAAKFK-LSHSRVVSGSADRTIKL 287 (459)
T ss_pred cCCCceeeeeccchhhhhhhcc-----------------------------cccceeeehhh-ccccceeeccccchhhh
Confidence 9999999999999887665533 47889999985 66666999999999999
Q ss_pred EcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccccccc
Q 001621 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1043)
Q Consensus 277 Wd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~ 356 (1043)
||+....+.. .+ |+ ++
T Consensus 288 WDl~k~~C~k------------------------------------t~-----l~-~S---------------------- 303 (459)
T KOG0288|consen 288 WDLQKAYCSK------------------------------------TV-----LP-GS---------------------- 303 (459)
T ss_pred hhhhhhheec------------------------------------cc-----cc-cc----------------------
Confidence 9985422110 00 00 00
Q ss_pred ceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCc
Q 001621 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1043)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 436 (1043)
.+ .|
T Consensus 304 -------------~c-------------------------------nD-------------------------------- 307 (459)
T KOG0288|consen 304 -------------QC-------------------------------ND-------------------------------- 307 (459)
T ss_pred -------------cc-------------------------------cc--------------------------------
Confidence 00 00
Q ss_pred ceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 001621 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1043)
Q Consensus 437 it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~ 516 (1043)
| . . ....+++||.|++||+||+.++.
T Consensus 308 I-----~-----------------------------------------------~--~~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 308 I-----V-----------------------------------------------C--SISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred e-----E-----------------------------------------------e--cceeeeecccccceEEEeccCCc
Confidence 0 0 0 01257889999999999999887
Q ss_pred ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceee
Q 001621 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1043)
Q Consensus 517 l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 596 (1043)
. .... .+ + +.|++|..++++..|.+.+.|.++.++|+.+... ...-..+++.
T Consensus 334 ~--~~sv-------~~--g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI--------------~~~~sA~g~k-- 385 (459)
T KOG0288|consen 334 K--TRSV-------PL--G-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI--------------RQTFSAEGFK-- 385 (459)
T ss_pred e--eeEe-------ec--C-cceeeEeeccCCeEEeeecCCCceeeeecccccE--------------EEEeeccccc--
Confidence 2 2222 12 2 4899999999999999999999999999987531 1111122222
Q ss_pred EEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCC
Q 001621 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREV 676 (1043)
Q Consensus 597 ~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~ 676 (1043)
.+|. .+.+.|||+|.|+|+|+.||.|+||++.++++.+.... +.....|++++|++-|
T Consensus 386 ---~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~sG---------------- 443 (459)
T KOG0288|consen 386 ---CASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNPSG---------------- 443 (459)
T ss_pred ---cccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcCCC----------------
Confidence 3343 99999999999999999999999999999999877654 2223469999997543
Q ss_pred CCCCCceEEEEeccCceEEEE
Q 001621 677 PVNPAEEVIIVLFKDAKISIV 697 (1043)
Q Consensus 677 ~~~~~~~~l~~gt~dg~I~~~ 697 (1043)
..|++++.++.+.+|
T Consensus 444 ------~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 444 ------SGLLSADKQKAVTLW 458 (459)
T ss_pred ------chhhcccCCcceEec
Confidence 348999999999888
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=4.4e-19 Score=193.81 Aligned_cols=310 Identities=16% Similarity=0.252 Sum_probs=214.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE
Q 001621 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~ 197 (1043)
..|++++++|.|-.+++|+-|-+|+.|++..-...+.. |+.. .......|.+++|+|. |.++|+.+
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr~l----------~P~E~h~i~sl~ys~T--g~~iLvvs 233 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FRQL----------QPCETHQINSLQYSVT--GDQILVVS 233 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchh--hhcc----------CcccccccceeeecCC--CCeEEEEe
Confidence 47999999999999999999999999998653222221 2211 1123567999999996 78899999
Q ss_pred CCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEE
Q 001621 198 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILL 276 (1043)
Q Consensus 198 ~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~i 276 (1043)
....++|+|-..-.......+. +-+. .+.....|...++|.||+ |+. ..++|++.||++++
T Consensus 234 g~aqakl~DRdG~~~~e~~KGD-QYI~----------------Dm~nTKGHia~lt~g~wh-P~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGD-QYIR----------------DMYNTKGHIAELTCGCWH-PDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred cCcceeEEccCCceeeeeeccc-hhhh----------------hhhccCCceeeeeccccc-cCcccceEEecCCCcEEE
Confidence 9999999996544444333221 0000 011233467889999998 765 57899999999999
Q ss_pred EcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccccccc
Q 001621 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1043)
Q Consensus 277 Wd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~ 356 (1043)
||+...+.. +.|+.
T Consensus 296 Wdv~~~k~q---------------------------------------------------------~qVik--------- 309 (641)
T KOG0772|consen 296 WDVNNTKSQ---------------------------------------------------------LQVIK--------- 309 (641)
T ss_pred EecCCchhh---------------------------------------------------------eeEEe---------
Confidence 998643210 00100
Q ss_pred ceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCc
Q 001621 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1043)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 436 (1043)
++. .++. ..|
T Consensus 310 ---------------------~k~----------------------------------~~g~------Rv~--------- 319 (641)
T KOG0772|consen 310 ---------------------TKP----------------------------------AGGK------RVP--------- 319 (641)
T ss_pred ---------------------ecc----------------------------------CCCc------ccC---------
Confidence 000 0000 000
Q ss_pred ceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 001621 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1043)
Q Consensus 437 it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~ 516 (1043)
+| .| +|++++.++|+|..||+|.+||...-.
T Consensus 320 ~t------------------------------------------------sC-~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 320 VT------------------------------------------------SC-AWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ce------------------------------------------------ee-ecCCCcchhhhcccCCceeeeecCCcc
Confidence 00 12 577888899999999999999975443
Q ss_pred ceeeeeeccceeeEEecCCCC--CeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcce
Q 001621 517 FKLICALDAEVQGIEVAGSRA--PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1043)
Q Consensus 517 l~~l~~l~~~~~~v~~~~~~~--~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 594 (1043)
..+.+.+. ..|.. .|+||+||+||++|++-+.|++++|||+........
T Consensus 351 v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~--------------------- 401 (641)
T KOG0772|consen 351 VRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN--------------------- 401 (641)
T ss_pred cccceEee--------eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh---------------------
Confidence 33322221 25655 899999999999999999999999999976432110
Q ss_pred eeEEecC--CCCCEEEEEEcCCCcEEEEEeC------CCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCcccc
Q 001621 595 CRAVFSL--VNSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLA 666 (1043)
Q Consensus 595 ~~~~l~~--h~~~Vt~la~s~dg~~lA~Gs~------dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~ 666 (1043)
+..+ ..-+-|.++|||+.++|++|+. .|++.++|..+...++++.+ ....|..+.|.+.-+
T Consensus 402 ---~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLN----- 470 (641)
T KOG0772|consen 402 ---VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLN----- 470 (641)
T ss_pred ---hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhh-----
Confidence 0111 1234678999999999999875 67899999999999999877 467899999975432
Q ss_pred CCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 667 ~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
-+++|+.||.+.++=..+
T Consensus 471 -----------------Qi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 471 -----------------QIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred -----------------heeeecCCCceEEEECcc
Confidence 299999999998875444
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.5e-19 Score=191.60 Aligned_cols=161 Identities=18% Similarity=0.309 Sum_probs=130.1
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
..++|.+|+|+|...+=+++...-.+++++..+.....++ .+...|+++.|..||++++.|++.|.|+|+++.+ +.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---RV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---HH
Confidence 3579999999997676677777788999999998888876 4788999999999999999999999999988543 11
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
+ -. ...+|..||..+.|+|. +++.+++|++|+.+++||+.+..++..+.+
T Consensus 102 i------LR--------~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~--------------- 151 (487)
T KOG0310|consen 102 I------LR--------QLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSG--------------- 151 (487)
T ss_pred H------HH--------HHhhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecC---------------
Confidence 1 10 11357889999999998 466788899999999999999886433322
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
|+.-|.|..|++.++..++||+-||.|++||+.+.
T Consensus 152 --------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 152 --------------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred --------------CcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 37889999997445668999999999999998654
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=193.58 Aligned_cols=176 Identities=16% Similarity=0.258 Sum_probs=128.2
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEE------EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL------LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~------~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
.+++..|++++++|.|..+++|+.|-+|++||..+.... +..-...+|+.++|++.+..+++++..-.++|+|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 456667999999999999999999999999997654322 12223568999999999999999999888999886
Q ss_pred CCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 106 ~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
.-.+.+...++.. +|.++ + ..++|...+++.+||
T Consensus 244 dG~~~~e~~KGDQ-----------------------YI~Dm-----------~------------nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQ-----------------------YIRDM-----------Y------------NTKGHIAELTCGCWH 277 (641)
T ss_pred CCceeeeeeccch-----------------------hhhhh-----------h------------ccCCceeeeeccccc
Confidence 4433332222111 11111 0 124677789999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
|+.-+ .+++++.||+++|||+...+. +.++..+ +++ | ..-++++++|+ |+|..
T Consensus 278 P~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVik~k-----------~~~-----g--------~Rv~~tsC~~n-rdg~~ 331 (641)
T KOG0772|consen 278 PDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVIKTK-----------PAG-----G--------KRVPVTSCAWN-RDGKL 331 (641)
T ss_pred cCccc-ceEEecCCCcEEEEecCCchhheeEEeec-----------cCC-----C--------cccCceeeecC-CCcch
Confidence 98544 599999999999999987543 2222210 011 1 14568888997 99999
Q ss_pred EEEEEcCCcEEEEcC
Q 001621 265 LAVGYIDGDILLWNT 279 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~ 279 (1043)
||+|..||+|.+|+.
T Consensus 332 iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDK 346 (641)
T ss_pred hhhcccCCceeeeec
Confidence 999999999999997
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3.4e-20 Score=195.09 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=155.5
Q ss_pred eecccCCCCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001621 29 AVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 29 ~~~~G~~~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
....||...|.|+|=+|.+ ..+|+|+.||.|+|||..+-+++..+. |.+.|+.|++.. ...++++.|++|+.|-++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 3448999999999999998 899999999999999998877776665 456999999988 459999999999999987
Q ss_pred CCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 107 SRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 107 t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
- .+++++...+.+..+.-...+..+++++++ |.||+..-+... .. +. | ....|.++.|+|
T Consensus 138 ~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv-~s--ms--w------------G~Dti~svkfNp 197 (433)
T KOG0268|consen 138 G-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPV-SS--MS--W------------GADSISSVKFNP 197 (433)
T ss_pred C-CcceeeeccccccccccccccccccccCce--eeecccccCCcc-ce--ee--c------------CCCceeEEecCC
Confidence 6 488888888888888887777778887665 677987543211 11 11 1 234689999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
- +-..|+++.+|+.|.|||++++.++....- .-.-..+||+ |++-.++
T Consensus 198 v-ETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------~mRTN~Iswn-PeafnF~ 245 (433)
T KOG0268|consen 198 V-ETSILASCASDRSIVLYDLRQASPLKKVIL------------------------------TMRTNTICWN-PEAFNFV 245 (433)
T ss_pred C-cchheeeeccCCceEEEecccCCccceeee------------------------------eccccceecC-cccccee
Confidence 7 444577777999999999999988765421 2234568997 9888888
Q ss_pred EEEcCCcEEEEcCC
Q 001621 267 VGYIDGDILLWNTS 280 (1043)
Q Consensus 267 tg~~DG~I~iWd~~ 280 (1043)
+|.+|-.+..+|+.
T Consensus 246 ~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 246 AANEDHNLYTYDMR 259 (433)
T ss_pred eccccccceehhhh
Confidence 89888888888864
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.1e-18 Score=187.16 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=160.2
Q ss_pred eeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceE---EEec----------------CCCCCeEEEEEecCC
Q 001621 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---LLIS----------------PSQLPYKNLEFLQNQ 88 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~---~~~~----------------~~~~~V~~l~Fs~d~ 88 (1043)
+..+-.|.-+++||+++|+.++..+++.||+|-=|++..... ++.. .|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 455567888999999999999999999999999898643321 1111 123468899999999
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 89 GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
.||++++.|+.|+|||.++.+.++.+..| +.|.+++|--....||+++.|.+|++|+++.- . | + +
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s---~-v------e 280 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----S---Y-V------E 280 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----H---H-H------H
Confidence 99999999999999999999999998877 89999999999999999999999999998751 1 1 1 1
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEE-ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~-~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (1043)
. .-+|.+.|.+|..... .+ ++++ ..|.+++||++.+...+...++
T Consensus 281 t---lyGHqd~v~~IdaL~r--eR-~vtVGgrDrT~rlwKi~eesqlifrg~---------------------------- 326 (479)
T KOG0299|consen 281 T---LYGHQDGVLGIDALSR--ER-CVTVGGRDRTVRLWKIPEESQLIFRGG---------------------------- 326 (479)
T ss_pred H---HhCCccceeeechhcc--cc-eEEeccccceeEEEeccccceeeeeCC----------------------------
Confidence 1 1257788999877664 54 5555 4999999999965543333222
Q ss_pred CCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 247 ~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
...+.|++|. +..++++|+.||.|.+|++...
T Consensus 327 --~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 327 --EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred --CCCeeeEEEe--cccceeeccCCceEEEeeeccc
Confidence 5678999996 7789999999999999998543
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=2.4e-16 Score=172.32 Aligned_cols=408 Identities=16% Similarity=0.187 Sum_probs=246.1
Q ss_pred eeecccCCCC--eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCC-------
Q 001621 28 IAVHYGIPAT--ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN------- 98 (1043)
Q Consensus 28 ~~~~~G~~~~--v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~------- 98 (1043)
...-||..+. =..+-+-|.|.++.--. +.+.+|+.+.......+.|..-|+++..+||...++++-.-+
T Consensus 56 LewvygYRG~dcR~Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~ 133 (626)
T KOG2106|consen 56 LEWVYGYRGVDCRNNLYLLPTGELVYFVA--AVGVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQ 133 (626)
T ss_pred eEEEEeecceeeeceeEEccCccEEEEec--cEEEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCC
Confidence 3444555443 23456678887655332 244455543322223345678999999999965555443333
Q ss_pred -cEEEEECCCCceeEEee-cCCCEEEEEEeCC--CCEEEEEeCC--CcEEEEEEeCCCCeEeeeceeecccccccccCCC
Q 001621 99 -EIQVWSLESRSLACCLK-WESNITAFSVISG--SHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1043)
Q Consensus 99 -~I~vWdl~t~~~l~~~~-~~~~Vtav~~sp~--~~~l~vG~~d--G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1043)
.+++||..+-+.++.+. ++..|+|++|++. |.+++.-+.+ -.+.||++.-.. ..+..
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~-----------------~~~~v 196 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKA-----------------KLGPV 196 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhh-----------------ccCcc
Confidence 48999988877777775 5678999999975 4455443332 235566654311 01111
Q ss_pred CCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCe
Q 001621 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1043)
Q Consensus 173 ~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V 252 (1043)
+.....|....|+|.| .+ |++.+..|.+.+|+++.+......+- + + ..+.+.|
T Consensus 197 k~sne~v~~a~FHPtd-~n-liit~Gk~H~~Fw~~~~~~l~k~~~~----f--e-------------------k~ekk~V 249 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTD-PN-LIITCGKGHLYFWTLRGGSLVKRQGI----F--E-------------------KREKKFV 249 (626)
T ss_pred eeccceEEEEEeccCC-Cc-EEEEeCCceEEEEEccCCceEEEeec----c--c-------------------cccceEE
Confidence 2234568889999985 44 88899999999999998876554321 0 0 0025789
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEe
Q 001621 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 332 (1043)
Q Consensus 253 ~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~ 332 (1043)
.|++|. +||. ++||.++|.|.+|+..+.+..++ .. .|...|..+ +..+ ++. |++
T Consensus 250 l~v~F~-engd-viTgDS~G~i~Iw~~~~~~~~k~------------~~---aH~ggv~~L--~~lr------~Gt-llS 303 (626)
T KOG2106|consen 250 LCVTFL-ENGD-VITGDSGGNILIWSKGTNRISKQ------------VH---AHDGGVFSL--CMLR------DGT-LLS 303 (626)
T ss_pred EEEEEc-CCCC-EEeecCCceEEEEeCCCceEEeE------------ee---ecCCceEEE--EEec------Ccc-Eee
Confidence 999996 8886 67999999999999854432211 11 133455555 3221 233 344
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeec
Q 001621 333 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 412 (1043)
Q Consensus 333 gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l 412 (1043)
||.| +-+..|+-+ ++..+
T Consensus 304 GgKD----Rki~~Wd~~-------y~k~r--------------------------------------------------- 321 (626)
T KOG2106|consen 304 GGKD----RKIILWDDN-------YRKLR--------------------------------------------------- 321 (626)
T ss_pred cCcc----ceEEecccc-------ccccc---------------------------------------------------
Confidence 6655 233333211 00000
Q ss_pred ccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccC
Q 001621 413 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 492 (1043)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s 492 (1043)
+..+|-....+..+ .
T Consensus 322 --------------~~elPe~~G~iRtv---------------------------------------------------~ 336 (626)
T KOG2106|consen 322 --------------ETELPEQFGPIRTV---------------------------------------------------A 336 (626)
T ss_pred --------------cccCchhcCCeeEE---------------------------------------------------e
Confidence 00111000001000 0
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
+.+.-++.|..-.+|-.=.++.+. ....-+|......++-.|+...|++++.|+.|++|+ .++.+
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f------------~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~- 401 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGF------------TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE- 401 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCc------------eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee-
Confidence 000003333323333222222222 011225666788889999999999999999999999 32211
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeE
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~ 652 (1043)
+. ..-..++.|+.|.|.| .||+|+..|.-.++|.++.. +.+.+. -..+++
T Consensus 402 ----------------------wt---~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~---d~~~ls 451 (626)
T KOG2106|consen 402 ----------------------WT---KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHT---DNEQLS 451 (626)
T ss_pred ----------------------EE---EEecCceeEeeccCcc-eEEEeeccceEEEEecccce-eEEEEe---cCCceE
Confidence 11 2235678999999999 89999999999999999944 444443 268999
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 653 sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
.+.|++.| .+|++|+.|++|++|-+..
T Consensus 452 ~v~ysp~G----------------------~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 452 VVRYSPDG----------------------AFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEEcCCC----------------------CEEEEecCCCeEEEEEECC
Confidence 99997654 6699999999999988543
No 78
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=190.99 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=103.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f 576 (1043)
.++|.|.|.++|+||++.+.+- ..+- -..++.+|+.+|-.+.+.+|+.+|.|.+.++..-+....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LL--lti~----------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~--- 254 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLL--LTIT----------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA--- 254 (476)
T ss_pred eEEEecCCceEEEEEeccceee--EEEe----------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc---
Confidence 7999999999999999999743 2221 124799999999999999999999999988865432110
Q ss_pred eccCCCceeeecCCCcceeeEEecCCCC--CEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEE
Q 001621 577 VLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1043)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 654 (1043)
+-.......++-+ ...+.+|.+ +||||++|-||.+|++|+.||.|+|||+.+.+++.+..- ..++|+.+
T Consensus 255 -----~v~~k~~~~~~t~-~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL 325 (476)
T KOG0646|consen 255 -----GVNQKGRHEENTQ-INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNL 325 (476)
T ss_pred -----cccccccccccce-eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hcccccee
Confidence 0000000011111 234789988 999999999999999999999999999999888766431 35899999
Q ss_pred EEEee
Q 001621 655 TWTEF 659 (1043)
Q Consensus 655 ~fs~~ 659 (1043)
.+.++
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 99754
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.82 E-value=1.3e-19 Score=188.93 Aligned_cols=198 Identities=15% Similarity=0.266 Sum_probs=161.2
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEe-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~-~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
..+||++.|.||.|+. ++|.+|+.|.+|+|||.++.+++-+ ++|...|..+.|+. +++++++.|.+|.|||+.+.
T Consensus 232 ~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 3489999999999964 5999999999999999999988754 35678999999986 57999999999999999876
Q ss_pred ce---eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 109 SL---ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 109 ~~---l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
.- .+.+.+| ..|+.+.|+ .+|+++++.|.+|++|+.++ +++.. . ..+|...|.|+++
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st--~efvR---t------------l~gHkRGIAClQY 368 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST--CEFVR---T------------LNGHKRGIACLQY 368 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc--eeeeh---h------------hhcccccceehhc
Confidence 52 2334445 678877774 56999999999999998776 33321 1 1356677889887
Q ss_pred cCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
. |+++++|++|.+|+|||+..|.++..+++ |+.-|.|+.|. ...
T Consensus 369 r----~rlvVSGSSDntIRlwdi~~G~cLRvLeG-----------------------------HEeLvRciRFd---~kr 412 (499)
T KOG0281|consen 369 R----DRLVVSGSSDNTIRLWDIECGACLRVLEG-----------------------------HEELVRCIRFD---NKR 412 (499)
T ss_pred c----CeEEEecCCCceEEEEeccccHHHHHHhc-----------------------------hHHhhhheeec---Cce
Confidence 5 56789999999999999999999888765 36778999984 788
Q ss_pred EEEEEcCCcEEEEcCCCCCccc
Q 001621 265 LAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
|++|.-||.|++||+.++....
T Consensus 413 IVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred eeeccccceEEEEecccccCCc
Confidence 9999999999999998876544
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=2.6e-18 Score=204.12 Aligned_cols=327 Identities=13% Similarity=0.200 Sum_probs=211.1
Q ss_pred cCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEECCC------------CceeEEee-cCCCEEEEEEeCCCCEEEEEeC
Q 001621 73 SPSQLPYKNLEFLQNQGFLISIT--NDNEIQVWSLES------------RSLACCLK-WESNITAFSVISGSHFMYIGDE 137 (1043)
Q Consensus 73 ~~~~~~V~~l~Fs~d~~~Lvs~s--~d~~I~vWdl~t------------~~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~ 137 (1043)
.++..+|-.+..+||+..+++++ .|+.+++|+.+. .+.++++. +.+.|+|+.|+|||.|||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456799999999999999999 899999999754 12345554 3489999999999999999999
Q ss_pred CCcEEEEEEeCCCCeEeeeceee------cccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe
Q 001621 138 NGLMSVIKYDADEGKLFQLPYNI------SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1043)
Q Consensus 138 dG~v~v~~~d~~~~~l~~~~~~i------~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~ 211 (1043)
|+.|.||.+... +--. .|.. ...| +.....++|...|..|.|+|+ +.+|++++-|++|.|||..+.+
T Consensus 90 D~~v~iW~~~~~-~~~~--~fgs~g~~~~vE~w--k~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 90 DRLVMIWERAEI-GSGT--VFGSTGGAKNVESW--KVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred cceEEEeeeccc-CCcc--ccccccccccccee--eEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccce
Confidence 999999998831 0000 0100 0001 111123568999999999994 7789999999999999999998
Q ss_pred EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCC
Q 001621 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTG 291 (1043)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~ 291 (1043)
.+.++.+ |...|-.+.|. |-|++||+-+.|++|++|.+.+-......
T Consensus 163 ~~~vl~~-----------------------------H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~I--- 209 (942)
T KOG0973|consen 163 LLKVLRG-----------------------------HQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSI--- 209 (942)
T ss_pred eeeeeec-----------------------------ccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEee---
Confidence 8877754 36778899997 99999999999999999996552211110
Q ss_pred CCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCce
Q 001621 292 SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSF 371 (1043)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v 371 (1043)
..|..... ...-+..+.| +|+ |..|++...-.+...
T Consensus 210 -t~pf~~~~-----~~T~f~RlSW-------SPD-G~~las~nA~n~~~~------------------------------ 245 (942)
T KOG0973|consen 210 -TKPFEESP-----LTTFFLRLSW-------SPD-GHHLASPNAVNGGKS------------------------------ 245 (942)
T ss_pred -ccchhhCC-----Ccceeeeccc-------CCC-cCeecchhhccCCcc------------------------------
Confidence 01110000 0112344556 342 333333211100001
Q ss_pred eEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCc
Q 001621 372 ADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHS 451 (1043)
Q Consensus 372 ~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~ 451 (1043)
.+.+.+-|. |+ .-..+..|+.++++++|.+
T Consensus 246 -------------------~~~IieR~t---Wk---------------------~~~~LvGH~~p~evvrFnP------- 275 (942)
T KOG0973|consen 246 -------------------TIAIIERGT---WK---------------------VDKDLVGHSAPVEVVRFNP------- 275 (942)
T ss_pred -------------------eeEEEecCC---ce---------------------eeeeeecCCCceEEEEeCh-------
Confidence 111111111 11 1123455888899999865
Q ss_pred hhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEE
Q 001621 452 SKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIE 531 (1043)
Q Consensus 452 ~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~ 531 (1043)
+++.. . ...|...... ..=.++|+|+.|++|-||...... |+.... ++.
T Consensus 276 -~lfe~----~---------------~~ng~~~~~~-----~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~-~lf--- 324 (942)
T KOG0973|consen 276 -KLFER----N---------------NKNGTSTQPN-----CYYCIAAVGSQDRSLSVWNTALPR--PLFVIH-NLF--- 324 (942)
T ss_pred -HHhcc----c---------------cccCCccCCC-----cceEEEEEecCCccEEEEecCCCC--chhhhh-hhh---
Confidence 11211 0 0111111100 011378999999999999986544 655443 211
Q ss_pred ecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 532 ~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
..+|..|+|||||..|.+++.||+|.++.|..+
T Consensus 325 ----~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 325 ----NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ----cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 248999999999999999999999999999865
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=7.6e-18 Score=198.62 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=158.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEe-c-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-S-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~-~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l 111 (1043)
+...+.|..|. ...+++|+.|.+|++|+..++..+.. + .|...|+.++|...+.+|++++.|.+++|||+.+|+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 45678888887 67889999999999999887776655 4 46789999999977788999999999999999999999
Q ss_pred EEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 112 CCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 112 ~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
+++..+ +.|.++... ..+++.|+.|.+|+||+++.. +.+. ...+|..+|.+|..+ +
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~--------~~l~---------l~~~h~~~V~~v~~~----~ 341 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG--------ACLN---------LLRGHTGPVNCVQLD----E 341 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc--------ceEE---------EeccccccEEEEEec----C
Confidence 999966 667777664 456777899999999998752 1111 112478899999987 3
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
.++++|+.||+|.+||+.+++++..+.+ |...|.++.+. +. .++++|+.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~g-----------------------------H~~~V~sl~~~-~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSG-----------------------------HTGRVYSLIVD-SE-NRLLSGSL 390 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecC-----------------------------CcceEEEEEec-Cc-ceEEeeee
Confidence 4799999999999999999999988754 37889999764 33 89999999
Q ss_pred CCcEEEEcCCCC
Q 001621 271 DGDILLWNTSTT 282 (1043)
Q Consensus 271 DG~I~iWd~~tg 282 (1043)
|++|++||+.+.
T Consensus 391 D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 391 DTTIKVWDLRTK 402 (537)
T ss_pred ccceEeecCCch
Confidence 999999999765
No 82
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=5.2e-18 Score=199.82 Aligned_cols=207 Identities=14% Similarity=0.148 Sum_probs=155.1
Q ss_pred cccCCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCCc-------eEEEec-CCCCCeEEEEEecCC-CEEEEEECCCcE
Q 001621 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI-------EGLLIS-PSQLPYKNLEFLQNQ-GFLISITNDNEI 100 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~~-------~~~~~~-~~~~~V~~l~Fs~d~-~~Lvs~s~d~~I 100 (1043)
..||.+.|.+++|+| ++++||+|+.||+|+||+.... +.+..+ .|...|.+|+|+|++ .+|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 458999999999999 8899999999999999997542 122222 356789999999975 689999999999
Q ss_pred EEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCC-C
Q 001621 101 QVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ-P 178 (1043)
Q Consensus 101 ~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~-~ 178 (1043)
+|||+++++.+..+..+ ..|++++|+|++.++++|+.||.|++|++... +.. ..+. .|.+ .
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg--~~v---~tl~------------~H~~~~ 213 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG--TIV---SSVE------------AHASAK 213 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC--cEE---EEEe------------cCCCCc
Confidence 99999999998888754 68999999999999999999999999987642 222 1111 1222 3
Q ss_pred eEEEEecCCCCCCEEEEEE----CCCeEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeE
Q 001621 179 VVGVLPHPNSSGNRVLIAY----ENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~----~dg~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~ 253 (1043)
+..+.|.|. +..+++++ .|+.|+|||+++.. .+..... . ....+.
T Consensus 214 ~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~---------d-------------------~~~~~~ 263 (493)
T PTZ00421 214 SQRCLWAKR--KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL---------D-------------------QSSALF 263 (493)
T ss_pred ceEEEEcCC--CCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc---------C-------------------CCCceE
Confidence 456778885 34455543 47899999998643 2222110 0 123455
Q ss_pred EEEEecCCCCEEEEEE-cCCcEEEEcCCCCCcc
Q 001621 254 ALCWASSSGSILAVGY-IDGDILLWNTSTTAST 285 (1043)
Q Consensus 254 sl~w~sp~g~~l~tg~-~DG~I~iWd~~tg~~~ 285 (1043)
...|. +++..|++|+ .||.|++||+.++...
T Consensus 264 ~~~~d-~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 264 IPFFD-EDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEc-CCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 55675 9999999887 5999999999887643
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=4.6e-18 Score=200.49 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=213.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-eecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-LKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~-~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
...+.+.+|. .+++++++.+++|++||..++..+.+ +..| +.|+++++...++++++|+.|.+++||++....+..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 4567788888 36799999999999999999998887 7766 899999999989999999999999999977654332
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
+ + .+|.+.|.++...+. .+++|+.|.+|++|++.++..+..+.+
T Consensus 286 ~-----l------------~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~--------------- 329 (537)
T KOG0274|consen 286 S-----L------------QGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRG--------------- 329 (537)
T ss_pred E-----e------------cCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEecc---------------
Confidence 2 1 257788999988763 477789999999999999999888753
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEE
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l 313 (1043)
|..+|.++..+ +..+++|+.||+|++||+.++++... +
T Consensus 330 --------------h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~s-------------------------l 367 (537)
T KOG0274|consen 330 --------------HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKS-------------------------L 367 (537)
T ss_pred --------------ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeee-------------------------e
Confidence 27889999863 88999999999999999875433211 0
Q ss_pred EeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEE
Q 001621 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1043)
Q Consensus 314 ~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~v 393 (1043)
. |
T Consensus 368 ---------~---------g------------------------------------------------------------ 369 (537)
T KOG0274|consen 368 ---------S---------G------------------------------------------------------------ 369 (537)
T ss_pred ---------c---------C------------------------------------------------------------
Confidence 0 0
Q ss_pred EcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCc
Q 001621 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1043)
Q Consensus 394 l~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 473 (1043)
|...|+++.+
T Consensus 370 ---------------------------------------H~~~V~sl~~------------------------------- 379 (537)
T KOG0274|consen 370 ---------------------------------------HTGRVYSLIV------------------------------- 379 (537)
T ss_pred ---------------------------------------CcceEEEEEe-------------------------------
Confidence 1001111100
Q ss_pred ccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEE
Q 001621 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1043)
Q Consensus 474 ~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~ 553 (1043)
... +.+++|+.|++||+||+.+.. ++++.+ .+|..-|..+.+ .++.|++
T Consensus 380 ------------------~~~-~~~~Sgs~D~~IkvWdl~~~~-~c~~tl---------~~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 380 ------------------DSE-NRLLSGSLDTTIKVWDLRTKR-KCIHTL---------QGHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred ------------------cCc-ceEEeeeeccceEeecCCchh-hhhhhh---------cCCccccccccc--ccceeEe
Confidence 000 478899999999999999883 234444 367677766655 4679999
Q ss_pred EecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecC-CCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 554 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 554 g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
++.||+|++||...+.. ...+.+ |.+.|+++++. -..+++++.||++.+||+
T Consensus 429 ~~aD~~Ik~WD~~~~~~-------------------------~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGEC-------------------------LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccccccEEEeecccCce-------------------------eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 99999999999877532 233455 77899999987 456899999999999999
Q ss_pred CCceEEEEe
Q 001621 633 NLLSVLFFT 641 (1043)
Q Consensus 633 ~~~~~l~~~ 641 (1043)
++++.+.+.
T Consensus 482 ~~~~~~~~l 490 (537)
T KOG0274|consen 482 RSGTLIRTL 490 (537)
T ss_pred ccCchhhhh
Confidence 998877654
No 84
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=9.2e-18 Score=197.73 Aligned_cols=283 Identities=16% Similarity=0.062 Sum_probs=184.8
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeec--ccee--eEEecCCCCCeEEEEEec-CCCeEEEEecCccEEEEE
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD--AEVQ--GIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~--~~~~--~v~~~~~~~~V~~l~fsp-d~~~La~g~~dG~V~i~~ 564 (1043)
..++++..+++++.+..+..|+...+.. +..+. .... ...+.+|.++|++++|+| ++.+||+|+.||+|+|||
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceE--EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 4567777788888889889998776541 11111 0000 113568999999999999 788999999999999999
Q ss_pred ecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCC-cEEEEEeCCCeEEEEEcCCceEEEEeec
Q 001621 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 565 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg-~~lA~Gs~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
+........ ...+...+.+|...|.+|+|+|++ .+||+|+.|++|+|||++++..+....
T Consensus 105 i~~~~~~~~------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~- 165 (493)
T PTZ00421 105 IPEEGLTQN------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK- 165 (493)
T ss_pred cCCCccccc------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-
Confidence 975321100 001224568999999999999986 689999999999999999988776543
Q ss_pred CCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCc-C---------
Q 001621 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHL-K--------- 713 (1043)
Q Consensus 644 ~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~-~--------- 713 (1043)
.+...|.+++|++++ .+|++++.|+.|++||..+++.+....... .
T Consensus 166 --~h~~~V~sla~spdG----------------------~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 166 --CHSDQITSLEWNLDG----------------------SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred --CCCCceEEEEEECCC----------------------CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 256789999998543 559999999999999999998765432111 0
Q ss_pred -CCceeEEEEE---eccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEe-eCcEEEEeCCChhhhh
Q 001621 714 -KKVIAISMEV---IDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQ-TGAVQIRSLPDLELVM 788 (1043)
Q Consensus 714 -~~~~a~~~~v---~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~-dG~i~i~slp~l~~~~ 788 (1043)
.......++- ...|+||++.+ .. +......+... ..+.+..+++++..|++++. ||.|++|++.+.+.+.
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~---~~-~p~~~~~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRK---MA-SPYSTVDLDQS-SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCC---CC-CceeEeccCCC-CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 0111111110 04699999865 11 11211111211 12222334678888888875 9999999997765432
Q ss_pred hhcccceeeeec-cCCCceeeEecCCcEEEEccceeEEEEecc
Q 001621 789 ESSLMSILRWNF-KANMDKTISADNGQITLANGSEVAFVNLLA 830 (1043)
Q Consensus 789 ~~~l~~~~~~~~-~~~~~~~i~~sdg~~~l~~g~e~~~~s~l~ 830 (1043)
. ..| .....+.+|+.--.-+=+.-+|++-+.-|.
T Consensus 297 ~--------~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 297 C--------SSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred E--------eeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 1 223 334566777652222333347877554443
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.4e-17 Score=168.68 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=187.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE
Q 001621 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~ 197 (1043)
++|.++++..+|..++.|+.|++++||+++..+ +...+ .-++|.+.|..++|+|. ...++++++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-------~~~~~--------~~~gh~~svdql~w~~~-~~d~~atas 84 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-------FRKEL--------VYRGHTDSVDQLCWDPK-HPDLFATAS 84 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchh-------hhhhh--------cccCCCcchhhheeCCC-CCcceEEec
Confidence 689999999999999999999999999988752 11121 12467789999999998 466799999
Q ss_pred CCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001621 198 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1043)
Q Consensus 198 ~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iW 277 (1043)
.|.+|++||++.++++..... ...=.-++|+ |+|.+++.+..|..|.+.
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~------------------------------~~eni~i~ws-p~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIET------------------------------KGENINITWS-PDGEYIAVGNKDDRITFI 133 (313)
T ss_pred CCceEEEEEeccCcEEEEeec------------------------------cCcceEEEEc-CCCCEEEEecCcccEEEE
Confidence 999999999999998876532 1222345685 999999999999999999
Q ss_pred cCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccc
Q 001621 278 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 357 (1043)
Q Consensus 278 d~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~ 357 (1043)
|..+-+...... . .-.+.-+.|.- .+.
T Consensus 134 d~r~~~~~~~~~-----------~-----~~e~ne~~w~~--------~nd----------------------------- 160 (313)
T KOG1407|consen 134 DARTYKIVNEEQ-----------F-----KFEVNEISWNN--------SND----------------------------- 160 (313)
T ss_pred Eecccceeehhc-----------c-----cceeeeeeecC--------CCC-----------------------------
Confidence 987654322100 0 00112222210 001
Q ss_pred eeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCC-CeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCc
Q 001621 358 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSP-GQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1043)
Q Consensus 358 ~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~-G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 436 (1043)
++.++++ |.+....-++ ..-.+++..|.
T Consensus 161 ---------------------------------~Fflt~GlG~v~ILsyps----------------Lkpv~si~AH~-- 189 (313)
T KOG1407|consen 161 ---------------------------------LFFLTNGLGCVEILSYPS----------------LKPVQSIKAHP-- 189 (313)
T ss_pred ---------------------------------EEEEecCCceEEEEeccc----------------cccccccccCC--
Confidence 3333333 4444321110 01111111111
Q ss_pred ceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 001621 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1043)
Q Consensus 437 it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~ 516 (1043)
....++ .|.|+|+++|+|++|..|-+||+..--
T Consensus 190 ----------------------------------------------snCicI-~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 190 ----------------------------------------------SNCICI-EFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred ----------------------------------------------cceEEE-EECCCCceEeeccccceeeccChhHhh
Confidence 111122 688999999999999999999987432
Q ss_pred ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceee
Q 001621 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1043)
Q Consensus 517 l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 596 (1043)
++..+ ..+.-||..|+||.||++||+|++|-.|-|=++.++.. ++.
T Consensus 223 --C~R~i---------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~-------------~~e---------- 268 (313)
T KOG1407|consen 223 --CERCI---------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR-------------VWE---------- 268 (313)
T ss_pred --hheee---------ccccCceEEEEeccCcceeeccCccceEEeEecccCCe-------------EEE----------
Confidence 22222 34557999999999999999999999888887776532 111
Q ss_pred EEecCCCCCEEEEEEcCCCcEEEEEeCCC
Q 001621 597 AVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1043)
Q Consensus 597 ~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg 625 (1043)
..+.++...|||+|...+||-+..|.
T Consensus 269 ---I~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 269 ---IPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ---eeccCCceeEEecCCCceeeEEecCC
Confidence 35789999999999999999888763
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=8.2e-19 Score=180.87 Aligned_cols=230 Identities=16% Similarity=0.210 Sum_probs=167.3
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
.|+|...+|++|+.|++|+++|++....+. .++ +. ....+|.+|+|.|.|.+|++|++--++|+||+++.+
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKr--A~K--~~-----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKR--AFK--VF-----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHH--HHH--Hh-----hccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 688889999999999999999998765211 111 11 122489999999999999999999999999998853
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~ 649 (1043)
. |++. .+-..|++.|+++.+|+.|++-++|+.||.|++||=-+.+++.+..- .+-++
T Consensus 250 c-----fvsa-----------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-AH~gs 306 (430)
T KOG0640|consen 250 C-----FVSA-----------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-AHGGS 306 (430)
T ss_pred E-----eeec-----------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh-hcCCc
Confidence 2 2211 12267999999999999999999999999999999988888754321 12357
Q ss_pred CeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCC-----cCCCceeEE----
Q 001621 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH-----LKKKVIAIS---- 720 (1043)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~-----~~~~~~a~~---- 720 (1043)
.|++..|..++ .|+++...|+.|++|+..+|.++...+=. .+....|+.
T Consensus 307 evcSa~Ftkn~----------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 307 EVCSAVFTKNG----------------------KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE 364 (430)
T ss_pred eeeeEEEccCC----------------------eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc
Confidence 89999998654 66999999999999999999988655211 111111110
Q ss_pred EEEe------ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEE
Q 001621 721 MEVI------DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIR 779 (1043)
Q Consensus 721 ~~v~------~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~ 779 (1043)
-+|+ ++++-|+..+ +.++.+....+.+.|.|+.- +|.+..+++.+.|-.+|.|
T Consensus 365 dyVl~pDEas~slcsWdaRt---adr~~l~slgHn~a~R~i~H---SP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDART---ADRVALLSLGHNGAVRWIVH---SPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ceEEccccccCceeeccccc---hhhhhhcccCCCCCceEEEe---CCCCCceeeecccceeeee
Confidence 1222 6677777766 44433333344567777543 5888888888888888876
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=2e-19 Score=180.49 Aligned_cols=229 Identities=13% Similarity=0.122 Sum_probs=177.2
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC
Q 001621 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1043)
Q Consensus 478 l~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d 557 (1043)
++|.+|+. ....+....+++++|-+.+|||+-+|. .++.++ |.--|.+++|+.|+.+|++|+.+
T Consensus 58 hkgavw~~----~l~~na~~aasaaadftakvw~a~tgd--elhsf~----------hkhivk~~af~~ds~~lltgg~e 121 (334)
T KOG0278|consen 58 HKGAVWSA----TLNKNATRAASAAADFTAKVWDAVTGD--ELHSFE----------HKHIVKAVAFSQDSNYLLTGGQE 121 (334)
T ss_pred cCcceeee----ecCchhhhhhhhcccchhhhhhhhhhh--hhhhhh----------hhheeeeEEecccchhhhccchH
Confidence 34555542 355666678899999999999999987 344443 44469999999999999999999
Q ss_pred ccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceE
Q 001621 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1043)
Q Consensus 558 G~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~ 637 (1043)
..+||||++..... ...+.+|++.|..+-|+...+.+.+.+.|++||+||.+++..
T Consensus 122 kllrvfdln~p~Ap------------------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAP------------------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred HHhhhhhccCCCCC------------------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 99999999875322 123579999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCce
Q 001621 638 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVI 717 (1043)
Q Consensus 638 l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~ 717 (1043)
+.++.+ .++|+++..+++|. +++.+..+.|.+||+.+-..|...-|.-...+.
T Consensus 178 v~sL~~----~s~VtSlEvs~dG~-----------------------ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SA 230 (334)
T KOG0278|consen 178 VQSLEF----NSPVTSLEVSQDGR-----------------------ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESA 230 (334)
T ss_pred EEEEec----CCCCcceeeccCCC-----------------------EEEEecCceeEEeccccccceeeccCccccccc
Confidence 988766 68999999987653 678888899999999998887766433333333
Q ss_pred eEE----EEEe----ccEEEEeeCcccCCCccee-eecccC-CcceeEEeeeecceeEEEEEEEeeCcEEEEeC
Q 001621 718 AIS----MEVI----DSVRLYSRKSVIQGNNKTV-QKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSL 781 (1043)
Q Consensus 718 a~~----~~v~----~~irl~~~~~~~~g~~k~~-~k~~~~-~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~sl 781 (1043)
.+. .+|. ..++.|+..+ |..... +|.++. .+| +.++|+|..-+++++||+||||.+
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~T---geEi~~~nkgh~gpVhc-----VrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNT---GEEIGSYNKGHFGPVHC-----VRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccC---CceeeecccCCCCceEE-----EEECCCCceeeccCCCceEEEEEe
Confidence 322 4444 5677778766 765555 344333 444 344899999999999999999987
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=179.97 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=141.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCc
Q 001621 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1043)
Q Consensus 491 ~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~ 570 (1043)
.+|.|.+|++++.||+.-+-|++++. .+.... .......+++.+|.|||.+|++|+.||.|+|||+....+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~--~lt~vs-------~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGS--QLTVVS-------DETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCc--EEEEEe-------eccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence 45677899999999999999999887 222221 112234699999999999999999999999999987543
Q ss_pred ccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCC
Q 001621 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 650 (1043)
Q Consensus 571 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~ 650 (1043)
. ..|.+|+++|++|+|+-+|-+||++++|+.|++||+|......+..+.+ ..+
T Consensus 382 ~-------------------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~ 434 (506)
T KOG0289|consen 382 V-------------------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKE 434 (506)
T ss_pred c-------------------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--ccc
Confidence 2 3468999999999999999999999999999999999877655544422 347
Q ss_pred eEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEE
Q 001621 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLY 730 (1043)
Q Consensus 651 V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~ 730 (1043)
|.++.|++. +.+|+.+++|=+|++++..+.+
T Consensus 435 v~s~~fD~S----------------------Gt~L~~~g~~l~Vy~~~k~~k~--------------------------- 465 (506)
T KOG0289|consen 435 VNSLSFDQS----------------------GTYLGIAGSDLQVYICKKKTKS--------------------------- 465 (506)
T ss_pred ceeEEEcCC----------------------CCeEEeecceeEEEEEeccccc---------------------------
Confidence 999999643 4668888777666666654432
Q ss_pred eeCcccCCCcceeeecccCCcce-eEEeeeecceeEEEEEEEeeCcEEEEeCC
Q 001621 731 SRKSVIQGNNKTVQKVKHKNRCC-WASTIEKDEKVCGLLLLFQTGAVQIRSLP 782 (1043)
Q Consensus 731 ~~~~~~~g~~k~~~k~~~~~~~~-~~~~~~~~~~~~~Lv~~~~dG~i~i~slp 782 (1043)
|.+.....-|. -+..+.+..+...|++++-|..+++|.++
T Consensus 466 ------------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 466 ------------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYALT 506 (506)
T ss_pred ------------ceeeehhhhcccccceeeecccceEEeeccchhheEEeecC
Confidence 22111111111 12223335677788888999999998874
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=1.6e-17 Score=178.71 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=133.2
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee
Q 001621 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~ 155 (1043)
..|+.+...+....+++++.|..+.++|..+.+.+.++.++ ..|+.+.++|+.+.+++++.|-.|+||.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--
Confidence 46888888876677999999999999999999999999987 689999999999999999999999999865432111
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCC
Q 001621 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1043)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1043)
..+.|..+|+.+..||. |.++++++.||+..+.|++++..+..... +
T Consensus 298 ---------------~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~-------~--------- 344 (506)
T KOG0289|consen 298 ---------------SSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSD-------E--------- 344 (506)
T ss_pred ---------------ccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEee-------c---------
Confidence 12457899999999995 88999999999999999999988765422 0
Q ss_pred CCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
...-.++++.|+ |||..+.+|..||.|+|||+.+
T Consensus 345 -----------~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 345 -----------TSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred -----------cccceeEEeeEc-CCceEEeccCCCceEEEEEcCC
Confidence 014568999997 9999999999999999999854
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=5.6e-18 Score=196.89 Aligned_cols=250 Identities=15% Similarity=0.216 Sum_probs=182.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc----------------------------eE--E------------
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----------------------------EG--L------------ 70 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~----------------------------~~--~------------ 70 (1043)
.|.+.|-++-|+++|++||+|+.||.|+||.+..- +. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 78899999999999999999999999999976440 00 0
Q ss_pred ---Eec----------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeC-CCC
Q 001621 71 ---LIS----------------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS-GSH 130 (1043)
Q Consensus 71 ---~~~----------------~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp-~~~ 130 (1043)
..+ .|.+-|..|.|+.+ ++|++++.|.+|+||++.+..+|++|.+..-|||++|.| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 000 12345899999999 799999999999999999999999999999999999999 567
Q ss_pred EEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC
Q 001621 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 131 ~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
|+++|+-||.||+|.+... ++. .|..+ ..-|++++|+|+ |+..++|.-+|.+++|+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~--~Vv------~W~Dl----------~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDK--KVV------DWNDL----------RDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cEeecccccceEEeecCcC--eeE------eehhh----------hhhheeEEeccC--CceEEEEEeccEEEEEEccCC
Confidence 9999999999999998652 222 22222 246999999994 888999999999999999988
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 290 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~ 290 (1043)
+.+....-. + + .. .....+.||.+.|..-+-..+++.+.|..|||+|..+.+++.-..+
T Consensus 484 k~~~~~~I~---~--~-----~~-----------Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 484 KLVSDFHIR---L--H-----NK-----------KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred eEEEeeeEe---e--c-----cC-----------ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence 876554210 0 0 00 0111347999999723334688999999999999976655432111
Q ss_pred CCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001621 291 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 291 ~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~ 349 (1043)
..+ ....+.. .+ .. ++..+|+|++| ..+-+|.++
T Consensus 543 ~~n------------~~SQ~~A-sf-------s~-Dgk~IVs~seD----s~VYiW~~~ 576 (712)
T KOG0283|consen 543 FRN------------TSSQISA-SF-------SS-DGKHIVSASED----SWVYIWKND 576 (712)
T ss_pred ccc------------CCcceee-eE-------cc-CCCEEEEeecC----ceEEEEeCC
Confidence 111 0111111 11 33 66778888866 568888764
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=3.9e-17 Score=169.71 Aligned_cols=158 Identities=13% Similarity=0.199 Sum_probs=128.7
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCC
Q 001621 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1043)
Q Consensus 72 ~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~ 151 (1043)
.-+....|..+.|+|.+..|++++.||.+++||+....+...+....++.+++|.+ ...+++|+-||.|+++++.....
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 33446789999999999999999999999999999998888888999999999987 45788999999999998877432
Q ss_pred eEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC
Q 001621 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1043)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1043)
... ..|..+|.+|.+.+. .| .+++|+.|++|++||.+.......+.
T Consensus 88 ~~i------------------gth~~~i~ci~~~~~-~~-~vIsgsWD~~ik~wD~R~~~~~~~~d-------------- 133 (323)
T KOG1036|consen 88 DQI------------------GTHDEGIRCIEYSYE-VG-CVISGSWDKTIKFWDPRNKVVVGTFD-------------- 133 (323)
T ss_pred eee------------------ccCCCceEEEEeecc-CC-eEEEcccCccEEEEeccccccccccc--------------
Confidence 221 247789999999986 35 49999999999999998743332221
Q ss_pred CCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
..+.|.++. -.|..|++|..|..+.+||+++..
T Consensus 134 ----------------~~kkVy~~~---v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 134 ----------------QGKKVYCMD---VSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ----------------cCceEEEEe---ccCCEEEEeecCceEEEEEccccc
Confidence 145788876 458999999999999999998764
No 92
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.9e-17 Score=162.34 Aligned_cols=206 Identities=9% Similarity=0.073 Sum_probs=175.0
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~ 109 (1043)
..++.+.|.++.|+-+|++..++..|.+|++|+.....++.+.. |...|..++.+.|...+++++.|..+++||++||+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 35778899999999999999999999999999988877776654 45689999999998999999999999999999999
Q ss_pred eeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 110 LACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 110 ~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
.++.+..| ++|+++.|..+...+++|+-|.++|+|+......+.. .+.. .....|.+|..+-
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi----Qild-----------ea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI----QILD-----------EAKDGVSSIDVAE-- 155 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc----chhh-----------hhcCceeEEEecc--
Confidence 99999977 8999999999999999999999999999876443322 2221 1235688887763
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
+.+++|+-||+++.||++.|+.....- ..+|+|++|+ ++|+..+.+
T Consensus 156 --heIvaGS~DGtvRtydiR~G~l~sDy~-------------------------------g~pit~vs~s-~d~nc~La~ 201 (307)
T KOG0316|consen 156 --HEIVAGSVDGTVRTYDIRKGTLSSDYF-------------------------------GHPITSVSFS-KDGNCSLAS 201 (307)
T ss_pred --cEEEeeccCCcEEEEEeecceeehhhc-------------------------------CCcceeEEec-CCCCEEEEe
Confidence 458999999999999999988653221 4679999996 999999999
Q ss_pred EcCCcEEEEcCCCCCcccc
Q 001621 269 YIDGDILLWNTSTTASTKG 287 (1043)
Q Consensus 269 ~~DG~I~iWd~~tg~~~~~ 287 (1043)
+-|++|++-|-.+|++++.
T Consensus 202 ~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred eccceeeecccchhHHHHH
Confidence 9999999999999988764
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=184.67 Aligned_cols=242 Identities=14% Similarity=0.253 Sum_probs=190.9
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCC--CCeEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ--LPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~--~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~ 109 (1043)
.||...|..++|+||.++|.+++.|-.+.+||+..++.....++. ..+.+++|.||+..+|+++.|++|..||++..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn- 344 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN- 344 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-
Confidence 589999999999999999999888989999999998887766654 78999999999999999999999999999754
Q ss_pred eeEEeecC--CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 110 LACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 110 ~l~~~~~~--~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
.+...+.. ..|.++++.+||+++++.+.|..|++++....... + ......+|++++.+-
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--------------~----lise~~~its~~iS~- 405 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--------------G----LISEEQPITSFSISK- 405 (519)
T ss_pred hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--------------c----cccccCceeEEEEcC-
Confidence 34444322 56999999999999999999999988765431110 0 012357899999998
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
+++++++--.+..+.+||+++.+.+..+.+ +. ...-+..-||..-+..+|++
T Consensus 406 -d~k~~LvnL~~qei~LWDl~e~~lv~kY~G-------hk--------------------q~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 406 -DGKLALVNLQDQEIHLWDLEENKLVRKYFG-------HK--------------------QGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred -CCcEEEEEcccCeeEEeecchhhHHHHhhc-------cc--------------------ccceEEEeccCCCCcceEEe
Confidence 588888888999999999998877655433 10 13345556786566789999
Q ss_pred EEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001621 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
|++|+.|++|+..+++++...++ |...|..++| +|.+.+.++++|+| +++++|.
T Consensus 458 GSED~kvyIWhr~sgkll~~LsG---------------Hs~~vNcVsw-------NP~~p~m~ASasDD----gtIRIWg 511 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLAVLSG---------------HSKTVNCVSW-------NPADPEMFASASDD----GTIRIWG 511 (519)
T ss_pred cCCCceEEEEEccCCceeEeecC---------------CcceeeEEec-------CCCCHHHhhccCCC----CeEEEec
Confidence 99999999999999887654332 3346778888 77788899999887 6788875
No 94
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=3.5e-17 Score=193.68 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=152.6
Q ss_pred ecccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCc-e-------EEEe-cCCCCCeEEEEEecCCCEE-EEEECCC
Q 001621 30 VHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI-E-------GLLI-SPSQLPYKNLEFLQNQGFL-ISITNDN 98 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~-~-------~~~~-~~~~~~V~~l~Fs~d~~~L-vs~s~d~ 98 (1043)
...||.+.|.+++|+|+ +.+||+|+.||+|+||+.... + .+.. ..|...|.+++|+|++..+ ++++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34689999999999997 789999999999999997532 1 1112 2356789999999987654 6889999
Q ss_pred cEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 99 EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
+|+|||+++++.+..+..+..|++++|+|+|.++++++.|+.|+||++... ... ..+. +|.+.
T Consensus 149 tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg--~~i---~tl~------------gH~g~ 211 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ--EIA---SSFH------------IHDGG 211 (568)
T ss_pred eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC--cEE---EEEe------------cccCC
Confidence 999999999998888877788999999999999999999999999987652 222 1111 23232
Q ss_pred -----eEEEEecCCCCCCEEEEEECCC----eEEEEEccC-CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCC
Q 001621 179 -----VVGVLPHPNSSGNRVLIAYENA----LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1043)
Q Consensus 179 -----V~sl~~sp~d~g~~ll~~~~dg----~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 248 (1043)
+....|+++ +.++++++.++ .|+|||++. ++++..... .. .
T Consensus 212 ~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-------d~--------------------~ 262 (568)
T PTZ00420 212 KNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-------DN--------------------A 262 (568)
T ss_pred ceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-------cC--------------------C
Confidence 233345674 66788877664 799999985 455544321 00 0
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 249 ~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
...+... |..++|.++++|..|++|++|++..+.
T Consensus 263 ~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 263 SAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ccceEEe-eeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 2333333 433679999999999999999997653
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9.3e-18 Score=169.40 Aligned_cols=245 Identities=18% Similarity=0.162 Sum_probs=165.8
Q ss_pred CCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 177 ~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
..+..|+|++.. .++++++..||.++|||+... .++..+ ++|..+|.++
T Consensus 61 D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-----------------------------kEH~~EV~Sv 110 (311)
T KOG0277|consen 61 DGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKF-----------------------------KEHKREVYSV 110 (311)
T ss_pred cceeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHH-----------------------------HhhhhheEEe
Confidence 467899999974 446999999999999996532 233322 1247899999
Q ss_pred EEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCC
Q 001621 256 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~ 335 (1043)
.|+-.++..+++++-||+|++|+...++.+++- ..++..|....| +|....++.+.+.
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---------------~gh~~~Iy~a~~-------sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---------------NGHNSCIYQAAF-------SPHIPNLFASASG 168 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEee---------------cCCccEEEEEec-------CCCCCCeEEEccC
Confidence 998556778889999999999999776655431 113334555555 3333444444432
Q ss_pred CCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccC
Q 001621 336 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 415 (1043)
Q Consensus 336 ~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~ 415 (1043)
+ ..+.+|++...
T Consensus 169 d----~~l~lwdvr~~---------------------------------------------------------------- 180 (311)
T KOG0277|consen 169 D----GTLRLWDVRSP---------------------------------------------------------------- 180 (311)
T ss_pred C----ceEEEEEecCC----------------------------------------------------------------
Confidence 2 23444432210
Q ss_pred CCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCC
Q 001621 416 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 495 (1043)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~ 495 (1043)
-.++.++.|...|+|+.+ . .-+.
T Consensus 181 ---------gk~~~i~ah~~Eil~cdw-------------~-----------------------------------ky~~ 203 (311)
T KOG0277|consen 181 ---------GKFMSIEAHNSEILCCDW-------------S-----------------------------------KYNH 203 (311)
T ss_pred ---------CceeEEEeccceeEeecc-------------c-----------------------------------ccCC
Confidence 011113334333443332 2 1234
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCC-CeEEEEecCccEEEEEecCCCcccce
Q 001621 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1043)
Q Consensus 496 ~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~-~~La~g~~dG~V~i~~~~~~~~~~~~ 574 (1043)
++++||+.|+.||.||+..-. .++. ++.+|..+|..|.|||.. ..||+++-|-++||||+..+....
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r-~pl~---------eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~-- 271 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLR-TPLF---------ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI-- 271 (311)
T ss_pred cEEEecCCCceEEEEehhhcc-ccce---------eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--
Confidence 689999999999999987543 1222 345899999999999974 578999999999999998653221
Q ss_pred eeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcC-CCcEEEEEeCCCeEEEEEc
Q 001621 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 575 ~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~-dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.+...|+.-|..+.||+ ++.++|+.+.|+.+.||+-
T Consensus 272 ----------------------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ----------------------ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----------------------hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 12357888899999998 5678999999999999984
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.1e-18 Score=197.95 Aligned_cols=214 Identities=16% Similarity=0.224 Sum_probs=174.0
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCc
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRS 109 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~-d~~~Lvs~s~d~~I~vWdl~t~~ 109 (1043)
..||.+.|..|+|+.++ +|.+++.|.+||+|.....+++..+.|..-|+|++|.| |.+|+++|+-|+.|+||++...+
T Consensus 365 f~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 36999999999999876 55588899999999999999999999999999999999 67999999999999999999998
Q ss_pred eeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
.+.-...+.-||++++.|+|++.++|+-+|.++++ ++...++.. .+.|.-.... +.....|++++|.|-+
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY--~t~~lk~~~-~~~I~~~~~K------k~~~~rITG~Q~~p~~- 513 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY--DTEGLKLVS-DFHIRLHNKK------KKQGKRITGLQFFPGD- 513 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEE--EccCCeEEE-eeeEeeccCc------cccCceeeeeEecCCC-
Confidence 88877778999999999999999999999998775 455555543 2334321111 1122389999999974
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
...||+.+.|..|+|||.++..++..+.+ ... ...-..+.|. .||++|++++
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-------~~n--------------------~~SQ~~Asfs-~Dgk~IVs~s 565 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLVHKFKG-------FRN--------------------TSSQISASFS-SDGKHIVSAS 565 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhhhhhcc-------ccc--------------------CCcceeeeEc-cCCCEEEEee
Confidence 44699999999999999988888877644 100 2233466786 8999999999
Q ss_pred cCCcEEEEcCCCCC
Q 001621 270 IDGDILLWNTSTTA 283 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~ 283 (1043)
+|..|.+|+.....
T Consensus 566 eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 566 EDSWVYIWKNDSFN 579 (712)
T ss_pred cCceEEEEeCCCCc
Confidence 99999999986543
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.5e-16 Score=151.79 Aligned_cols=311 Identities=15% Similarity=0.218 Sum_probs=195.9
Q ss_pred CCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc-cccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCc
Q 001621 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK-GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1043)
Q Consensus 249 ~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~-~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~ 327 (1043)
.+.|.++.|+ |+|...++|+...++++--.+.-.... ......-.|.. +--+...++..|....|+ | .+
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v-~~kr~khhkgsiyc~~ws-------~-~g 101 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSV-LCKRNKHHKGSIYCTAWS-------P-CG 101 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeE-EeeeccccCccEEEEEec-------C-cc
Confidence 6779999997 999999999999999998776533221 11111111122 112234466789999995 3 46
Q ss_pred eEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeec-CCCceeEEEEeecCCCCCCCCccEEEEEcCCCe--EEEee
Q 001621 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLFVLTSPGQ--LHFYD 404 (1043)
Q Consensus 328 ~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~-~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~--l~~~d 404 (1043)
.|+++|+.+ ..+.++.++-.+...+. ..+.+. ++|.+.|++++..... | .++++....|. ++.-|
T Consensus 102 eliatgsnd----k~ik~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s-~----~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 102 ELIATGSND----KTIKVLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPES-G----GAILASAGAGDCKIYITD 169 (350)
T ss_pred CeEEecCCC----ceEEEEecccccccccC---cceeeeecCCceeeeEEecCCCc-C----ceEEEecCCCcceEEEee
Confidence 788888876 67888877643311000 012222 5678888888765432 1 12333322222 22222
Q ss_pred cccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCC
Q 001621 405 NASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1043)
Q Consensus 405 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~ 484 (1043)
.+ .+ +.+. .+.|+...
T Consensus 170 c~-----------------------------------------~g-----------------~~~~------a~sghtgh 185 (350)
T KOG0641|consen 170 CG-----------------------------------------RG-----------------QGFH------ALSGHTGH 185 (350)
T ss_pred cC-----------------------------------------CC-----------------Ccce------eecCCccc
Confidence 11 00 0010 02222222
Q ss_pred CCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEE
Q 001621 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 485 ~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~ 564 (1043)
+.+ -++-++-++++|+.|.+||+||+.-+. ...++.....+ -.-.+.+|.+|+..|.|++||+|..|.+..+||
T Consensus 186 ila--lyswn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~--~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 186 ILA--LYSWNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHD--GGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEE--EEEecCcEEEccCCCceEEEEeeeccc--eeeeccCcccC--CCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 211 255667799999999999999988765 22222211000 001236899999999999999999999999999
Q ss_pred ecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceE--EEEee
Q 001621 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV--LFFTD 642 (1043)
Q Consensus 565 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~--l~~~~ 642 (1043)
+..++. ++.|..|++.|.|+.|||...++.+++.|-.|++-|+++.-. +-.+.
T Consensus 260 irg~r~-------------------------iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v 314 (350)
T KOG0641|consen 260 IRGGRM-------------------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV 314 (350)
T ss_pred eeCCce-------------------------eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence 987642 256789999999999999999999999999999999976210 00011
Q ss_pred cCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcC
Q 001621 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 643 ~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~ 699 (1043)
+ ..+...+..+.|.+.. -..++.+.|.++.+|-.
T Consensus 315 v-~ehkdk~i~~rwh~~d----------------------~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 315 V-AEHKDKAIQCRWHPQD----------------------FSFISSSADKTATLWAL 348 (350)
T ss_pred E-EeccCceEEEEecCcc----------------------ceeeeccCcceEEEecc
Confidence 1 1245667777885421 22788899999998853
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=1.1e-15 Score=170.44 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=135.1
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCceeEEeecCCCEEEEEE
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lv-s~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~ 125 (1043)
+.++++++.||.|++|+....+.+..+.....+..++|+|++.+|+ +++.++.|++||+.+++.+..+..+..+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4688999999999999987666655555445577899999988774 556789999999999998887766666788999
Q ss_pred eCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCC-eEE
Q 001621 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVI 203 (1043)
Q Consensus 126 sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg-~I~ 203 (1043)
+|+++.++++. .++.|++|++... ... ..++ ....+.+++|+|+ |+.++++..++ .+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~--~~~---~~~~-------------~~~~~~~~~~~~d--g~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETR--KVL---AEIP-------------VGVEPEGMAVSPD--GKIVVNTSETTNMAH 140 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCC--eEE---eEee-------------CCCCcceEEECCC--CCEEEEEecCCCeEE
Confidence 99999887764 5788988887542 211 1111 1123578999994 87787777765 566
Q ss_pred EEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEcCCCC
Q 001621 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1043)
Q Consensus 204 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg-~~DG~I~iWd~~tg 282 (1043)
+||..+++.+..... ...+.+++|+ |+|+.|+.+ ..+|.|.+||+.++
T Consensus 141 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV------------------------------DQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEeCCCCeEEEEEEc------------------------------CCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 789988776543211 2234578896 999988655 46899999998654
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.6e-16 Score=163.63 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=154.1
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
...|+.+.|+|..+.|+++++||.+++|+....+....+.+..|+.+++|.++ ...++++.||.|+++|++++.....-
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec
Confidence 35699999999999999999999999999988787778888899999999997 67999999999999999999877766
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEE
Q 001621 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1043)
Q Consensus 115 ~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll 194 (1043)
.+...|.|++.++....+++|+=|++|++|+.... ..+.. ......|.++... |++|+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--------~~~~~----------~d~~kkVy~~~v~----g~~Lv 149 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--------VVVGT----------FDQGKKVYCMDVS----GNRLV 149 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc--------ccccc----------cccCceEEEEecc----CCEEE
Confidence 77799999999999999999999999999985431 11110 0112368888765 55799
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcE
Q 001621 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1043)
Q Consensus 195 ~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I 274 (1043)
+|..+..|.+||++.........- -. -+-.+.|++.. |++.=.++++.||.|
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re--S~-------------------------lkyqtR~v~~~-pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE--SS-------------------------LKYQTRCVALV-PNGEGYVVSSIEGRV 201 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc--cc-------------------------ceeEEEEEEEe-cCCCceEEEeecceE
Confidence 999999999999987654321100 00 04457899987 998889999999987
Q ss_pred EEEcC
Q 001621 275 LLWNT 279 (1043)
Q Consensus 275 ~iWd~ 279 (1043)
.+=.+
T Consensus 202 avE~~ 206 (323)
T KOG1036|consen 202 AVEYF 206 (323)
T ss_pred EEEcc
Confidence 66444
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-17 Score=185.24 Aligned_cols=236 Identities=15% Similarity=0.169 Sum_probs=180.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~--~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
...|+++.|+++|+.||+|+.+|.|.|||......+... .|...|-+|+|.. ..|.+++.|+.|..+|++..+.+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhh
Confidence 778999999999999999999999999998665544333 2578899999995 458999999999999999987655
Q ss_pred E-eecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 113 C-LKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 113 ~-~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
. +..| ..|+.+.+++|+.++++|+.|..+.||+....... +.+ ..|...|.+++|+|--.|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~-----~~~------------~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK-----FTF------------TEHTAAVKALAWCPWQSG 357 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc-----EEE------------eccceeeeEeeeCCCccC
Confidence 5 5544 78999999999999999999999999987432211 222 246789999999998544
Q ss_pred CEEEEEE--CCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 191 NRVLIAY--ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 191 ~~ll~~~--~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
.|++|+ .|++|++||+.+++.+..... ...|++|.|+ +..+.|+++
T Consensus 358 -lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------------------------------gsQVcsL~Ws-k~~kEi~st 405 (484)
T KOG0305|consen 358 -LLATGGGSADRCIKFWNTNTGARIDSVDT------------------------------GSQVCSLIWS-KKYKELLST 405 (484)
T ss_pred -ceEEcCCCcccEEEEEEcCCCcEeccccc------------------------------CCceeeEEEc-CCCCEEEEe
Confidence 577764 488999999999988765422 5789999996 998888774
Q ss_pred --EcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEE
Q 001621 269 --YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1043)
Q Consensus 269 --~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~ 346 (1043)
+.++.|.+|+.++.+....+. .|..+|..++| +|++..+ ++|+.| ++|.+|
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~---------------gH~~RVl~la~-------SPdg~~i-~t~a~D----ETlrfw 458 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELL---------------GHTSRVLYLAL-------SPDGETI-VTGAAD----ETLRFW 458 (484)
T ss_pred cCCCCCcEEEEeccccceeeeec---------------CCcceeEEEEE-------CCCCCEE-EEeccc----CcEEec
Confidence 568899999998855443211 24456777766 5654554 444443 578887
Q ss_pred Ec
Q 001621 347 SL 348 (1043)
Q Consensus 347 ~l 348 (1043)
.+
T Consensus 459 ~~ 460 (484)
T KOG0305|consen 459 NL 460 (484)
T ss_pred cc
Confidence 65
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-15 Score=159.38 Aligned_cols=155 Identities=9% Similarity=0.109 Sum_probs=104.6
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
++.|.|-++|+|.....|+++|+..=+-.|..++..+ .+.....+.|.|||||+.|+.++..+.+++.|--.+.
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 3445555666666555777777765432222222211 0233578999999999999999999999999865542
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCC--CCE-EEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--SPV-RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V-t~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~ 646 (1043)
.. ..+..+. +.+ -..+|+|||+++.+|+.||+|.+|+++++..+....- .
T Consensus 221 ~~-------------------------~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~--~ 273 (311)
T KOG1446|consen 221 VK-------------------------STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG--P 273 (311)
T ss_pred Ee-------------------------eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC--C
Confidence 11 1122221 111 4567899999999999999999999999988765422 2
Q ss_pred CCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 647 ~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
...++.++.|.|. +....|.+..+.+|=+..
T Consensus 274 ~~~~~~~~~fnP~------------------------~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 274 NGGPVSCVRFNPR------------------------YAMFVSASSNLVFWLPDE 304 (311)
T ss_pred CCCCccccccCCc------------------------eeeeeecCceEEEEeccc
Confidence 4678899999653 355667788888887654
No 102
>PTZ00420 coronin; Provisional
Probab=99.76 E-value=6.4e-16 Score=182.97 Aligned_cols=254 Identities=15% Similarity=0.185 Sum_probs=166.2
Q ss_pred EEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCc--------eeEEeecC-CCEE
Q 001621 53 ATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRS--------LACCLKWE-SNIT 121 (1043)
Q Consensus 53 gt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d-~~~Lvs~s~d~~I~vWdl~t~~--------~l~~~~~~-~~Vt 121 (1043)
|+.+|.|++|+......+..+ .|..+|.+++|+|+ +.+|++++.|++|+|||+.++. ++..+..| ..|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999987555544443 46789999999996 6899999999999999998642 23345544 7899
Q ss_pred EEEEeCCCCEE-EEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCC
Q 001621 122 AFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1043)
Q Consensus 122 av~~sp~~~~l-~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg 200 (1043)
+++|+|++.++ ++|+.||+|+||++.... .. +.+. +...|.+++|+|+ |.+|++++.|+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~---~~i~-------------~~~~V~Slswspd--G~lLat~s~D~ 189 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RA---FQIN-------------MPKKLSSLKWNIK--GNLLSGTCVGK 189 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCc--EE---EEEe-------------cCCcEEEEEECCC--CCEEEEEecCC
Confidence 99999998765 688999999999986532 11 1111 2357999999994 88888888999
Q ss_pred eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC----cEEE
Q 001621 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG----DILL 276 (1043)
Q Consensus 201 ~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG----~I~i 276 (1043)
.|+|||+++++.+..+.. |.. .. ....+....|+ +++.+|+|++.|+ .|++
T Consensus 190 ~IrIwD~Rsg~~i~tl~g-------H~g-----~~------------~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHI-------HDG-----GK------------NTKNIWIDGLG-GDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred EEEEEECCCCcEEEEEec-------ccC-----Cc------------eeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEE
Confidence 999999999988766533 100 00 01122333453 8899999988774 7999
Q ss_pred EcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccccccc
Q 001621 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1043)
Q Consensus 277 Wd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~ 356 (1043)
||+.+... ++..+.+.. ....+. -.| +++.+.+|++|..| ..+++|++.-..
T Consensus 245 WDlr~~~~----------pl~~~~ld~--~~~~L~-p~~-------D~~tg~l~lsGkGD----~tIr~~e~~~~~---- 296 (568)
T PTZ00420 245 WDLKNTTS----------ALVTMSIDN--ASAPLI-PHY-------DESTGLIYLIGKGD----GNCRYYQHSLGS---- 296 (568)
T ss_pred EECCCCCC----------ceEEEEecC--CccceE-Eee-------eCCCCCEEEEEECC----CeEEEEEccCCc----
Confidence 99975321 222221111 011111 112 44467788888655 578888864211
Q ss_pred ceeeeeEeecCCCceeEEEEeecCC
Q 001621 357 LRCVSRVDITLTGSFADMILLSSAG 381 (1043)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~s 381 (1043)
+... -......++..+.++|...
T Consensus 297 ~~~l--~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 297 IRKV--NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEee--cccccCCCccceEEccccc
Confidence 1111 0122344566677777654
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1e-16 Score=166.51 Aligned_cols=241 Identities=16% Similarity=0.173 Sum_probs=182.4
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC-CceEEEecCCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQG--FLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~-~~~~~~~~~~~~~V~~l~Fs~d~~--~Lvs~s~d~~I~vWdl~t~ 108 (1043)
..|.+.++|||. ++.++|+|+.|-+|+|||.. +.+.-..+.|.+.|++|.|.++.. .|++++.||.|.+|+...-
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 468899999999 57899999999999999974 445444556789999999999754 8999999999999999999
Q ss_pred ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
.++.+++.| +.|+.+++.|.+++.++-+.|+.++.|++-..+..+. .+ + . ...+.|.|+|.
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-----~~---L--------~--~~at~v~w~~~ 179 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-----LN---L--------K--NKATLVSWSPQ 179 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee-----ec---c--------C--CcceeeEEcCC
Confidence 999999866 7899999999999999999999999999765433222 21 1 0 11244999995
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
|.+++++..++. -+|.+....+...... +..+.|+.|. ++..+++
T Consensus 180 --Gd~F~v~~~~~i-~i~q~d~A~v~~~i~~------------------------------~~r~l~~~~l--~~~~L~v 224 (362)
T KOG0294|consen 180 --GDHFVVSGRNKI-DIYQLDNASVFREIEN------------------------------PKRILCATFL--DGSELLV 224 (362)
T ss_pred --CCEEEEEeccEE-EEEecccHhHhhhhhc------------------------------cccceeeeec--CCceEEE
Confidence 887888877755 7898877655433221 4567888885 7899999
Q ss_pred EEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001621 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
|.+|+.|++||..++.... .+. .|..+|..+.... ++ .+.+|++.++| .-+.||+
T Consensus 225 G~d~~~i~~~D~ds~~~~~-----------~~~----AH~~RVK~i~~~~-----~~-~~~~lvTaSSD----G~I~vWd 279 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLT-----------EFL----AHENRVKDIASYT-----NP-EHEYLVTASSD----GFIKVWD 279 (362)
T ss_pred ecCCceEEEeccCCCccce-----------eee----cchhheeeeEEEe-----cC-CceEEEEeccC----ceEEEEE
Confidence 9999999999988743222 111 1334555553222 33 45788888776 5799999
Q ss_pred cCccc
Q 001621 348 LEWSS 352 (1043)
Q Consensus 348 l~~~~ 352 (1043)
++|..
T Consensus 280 ~~~~~ 284 (362)
T KOG0294|consen 280 IDMET 284 (362)
T ss_pred ccccc
Confidence 88764
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=1.3e-16 Score=165.08 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=160.2
Q ss_pred ccCC-CCcEEEEEeCCCcEEEEeCCCC-CceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecC
Q 001621 490 KCHS-VDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 490 ~~s~-~~~~l~tg~~DgtVriWD~~~~-~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~ 567 (1043)
+||| ...++++|+.||+||+|+++.. .+.+ + .+..|.+||.+++|+.||..+++|+.|+.+++||+.+
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----k------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----K------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccc----h------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 7888 5667889999999999999873 4222 1 1125778999999999999999999999999999998
Q ss_pred CCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCc--EEEEEeCCCeEEEEEcCCceEEEEeecCC
Q 001621 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA--KLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1043)
Q Consensus 568 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~--~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~ 645 (1043)
++. ..+..|.++|.++.|-+... .|++||.|.+|++||.+.+..++++.+
T Consensus 104 ~Q~--------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-- 155 (347)
T KOG0647|consen 104 GQV--------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-- 155 (347)
T ss_pred CCe--------------------------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--
Confidence 642 23468999999999977655 899999999999999999999998877
Q ss_pred CCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCC---CceeEE--
Q 001621 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKK---KVIAIS-- 720 (1043)
Q Consensus 646 ~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~---~~~a~~-- 720 (1043)
+..|.++..- ...+++++.+.+|.+|+.+++........+|.+ ..+++.
T Consensus 156 --PeRvYa~Dv~------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d 209 (347)
T KOG0647|consen 156 --PERVYAADVL------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD 209 (347)
T ss_pred --cceeeehhcc------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence 4455554441 134899999999999999886544332222222 222222
Q ss_pred --EEEe----ccEEEEeeCcccCCCcce---eee-cc-cCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhhh
Q 001621 721 --MEVI----DSVRLYSRKSVIQGNNKT---VQK-VK-HKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVME 789 (1043)
Q Consensus 721 --~~v~----~~irl~~~~~~~~g~~k~---~~k-~~-~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~~ 789 (1043)
.+.+ ..+-+..+....+ +.+- .|+ .. .....+.+.-+.+.|--.-|++++.||++..|+--.-..|+.
T Consensus 210 ~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 210 KDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred CCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 1122 3344444433111 1111 111 00 001133333444445455599999999999999855444555
Q ss_pred hc
Q 001621 790 SS 791 (1043)
Q Consensus 790 ~~ 791 (1043)
++
T Consensus 289 s~ 290 (347)
T KOG0647|consen 289 SE 290 (347)
T ss_pred cC
Confidence 43
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.75 E-value=8.1e-17 Score=191.57 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=194.2
Q ss_pred ccCCCCcEEEEEe--CCCcEEEEeCCCCC--ceeeee-eccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEE
Q 001621 490 KCHSVDRVYLAGY--HDGSVRIWDATYPV--FKLICA-LDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 490 ~~s~~~~~l~tg~--~DgtVriWD~~~~~--l~~l~~-l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~ 564 (1043)
..+|++..++||+ .||.++||+...-. .+.... ++..+ ..+..|.+.|+|+-|+|||.+||+|++|+.|.||+
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l--~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHL--CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhh--eeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 6899999999999 99999999875421 000000 11111 23568999999999999999999999999999999
Q ss_pred ecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecC
Q 001621 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1043)
Q Consensus 565 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~ 644 (1043)
... ...+ --|-+ .++.. .-|-..+...|.+|.+.|..|+|+|++.+||+++.|.+|.+|+.++...+..+.
T Consensus 98 ~~~-~~~~-~~fgs--~g~~~---~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-- 168 (942)
T KOG0973|consen 98 RAE-IGSG-TVFGS--TGGAK---NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-- 168 (942)
T ss_pred ecc-cCCc-ccccc--ccccc---ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--
Confidence 875 1110 01111 01111 112234456789999999999999999999999999999999999986665443
Q ss_pred CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecC----------------
Q 001621 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS---------------- 708 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~---------------- 708 (1043)
+|.+.|.-+.|+| .+.|+++-+.|++|.+|+..+-.+..+.
T Consensus 169 -~H~s~VKGvs~DP----------------------~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 169 -GHQSLVKGVSWDP----------------------IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred -cccccccceEECC----------------------ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 3778999999964 4577999999999999995442222221
Q ss_pred CCCcCCCceeEEEEEe---ccEEEEeeCcccCCCcce-eeecccCCcceeEEeeee---ccee-----------EEEEEE
Q 001621 709 PWHLKKKVIAISMEVI---DSVRLYSRKSVIQGNNKT-VQKVKHKNRCCWASTIEK---DEKV-----------CGLLLL 770 (1043)
Q Consensus 709 ~~~~~~~~~a~~~~v~---~~irl~~~~~~~~g~~k~-~~k~~~~~~~~~~~~~~~---~~~~-----------~~Lv~~ 770 (1043)
.++|+..-.+.+-.+. ..+-|.+- |.-+. .+-+.|.++|-.+.+-.+ .+.. |.++++
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR-----~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIER-----GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEec-----CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 1444444333321111 11111111 11110 000223344443332111 1111 589999
Q ss_pred EeeCcEEEEeCC---ChhhhhhhcccceeeeeccCCCceeeEec-CCcEEEEc
Q 001621 771 FQTGAVQIRSLP---DLELVMESSLMSILRWNFKANMDKTISAD-NGQITLAN 819 (1043)
Q Consensus 771 ~~dG~i~i~slp---~l~~~~~~~l~~~~~~~~~~~~~~~i~~s-dg~~~l~~ 819 (1043)
++|+.|-||..- .|-.+.+....+|++.++.++|-..+.|| ||.+.+..
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred cCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 999999999984 34446677778888888899999999999 99998875
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=1.7e-15 Score=168.85 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=100.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE-EEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~-vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
..+++.+.|+.|.+||+.+++.+..+..+..+.+++++|++..++ ++..++.|++|+.+. +++. ..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~---~~~~------ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT--GEVI---GTLP------ 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC--CcEE---Eecc------
Confidence 357788899999999999999999888777788899999999875 566788898887654 2222 1111
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEE-ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~-~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (1043)
. ...+..+.|+|+ ++.++++ ..++.|.+||+.+.+.+..+..
T Consensus 71 ------~-~~~~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---------------------------- 113 (300)
T TIGR03866 71 ------S-GPDPELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPV---------------------------- 113 (300)
T ss_pred ------C-CCCccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------------
Confidence 0 122467889995 6656555 4589999999998876655421
Q ss_pred CCCCCeEEEEEecCCCCEEEEEEcCCc-EEEEcC
Q 001621 247 PEEKEISALCWASSSGSILAVGYIDGD-ILLWNT 279 (1043)
Q Consensus 247 ~~~~~V~sl~w~sp~g~~l~tg~~DG~-I~iWd~ 279 (1043)
...+.+++|+ |+|..++++..++. +.+||.
T Consensus 114 --~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 114 --GVEPEGMAVS-PDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred --CCCcceEEEC-CCCCEEEEEecCCCeEEEEeC
Confidence 2235678896 99999998877643 444554
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=162.21 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=114.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEee---cCCCEEEEEEeCCCCEEEEEeCCCc-EEEEEEeC
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCLK---WESNITAFSVISGSHFMYIGDENGL-MSVIKYDA 148 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~--l~~~~---~~~~Vtav~~sp~~~~l~vG~~dG~-v~v~~~d~ 148 (1043)
|...|++++|+.||.+|++++.|+.|+||++..-.. ...++ .-+.-|.++|.||..-+++...+|. ++|+.++-
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 567899999999999999999999999999976321 12221 1146799999999998888777764 77776653
Q ss_pred CC-CeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCccccccccc
Q 001621 149 DE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1043)
Q Consensus 149 ~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~ 227 (1043)
.. +.... + -++++.+ .+++.|..+|..+-..- .+.++++++.|..|.||+++ |+.+..... .++
T Consensus 165 ~~dG~~~~-~-~v~~D~~----~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~idt--nq~---- 229 (420)
T KOG2096|consen 165 KTDGSGSH-H-FVHIDNL----EFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQSIDT--NQS---- 229 (420)
T ss_pred cccCCCCc-c-ccccccc----ccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeeeecc--ccc----
Confidence 21 22221 1 1232221 23455666777766544 57888999999999999998 777766532 011
Q ss_pred ccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
+ -..++. ||+|++|++++-.-++++|.+
T Consensus 230 ----------------------~-n~~aav-SP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 230 ----------------------S-NYDAAV-SPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ----------------------c-ccceee-CCCCcEEEEecCCCCceEEEE
Confidence 1 112233 599999999988888888874
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.8e-16 Score=163.81 Aligned_cols=325 Identities=15% Similarity=0.212 Sum_probs=222.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
.|+..|+.++--..+..+-+++.|.+.++|.+++++++.++.+| +.|+++.|++.+.++++++.|++-++|.+...
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~--- 222 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN--- 222 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc---
Confidence 36789999988887788999999999999999999999999877 89999999999999999999999999986542
Q ss_pred EeeeceeecccccccccCCCCCCCC--CeEEE-EecCCCCCCEEEEEECCC-eEEEEEccCCeEEEEeCCcccccccccc
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQ--PVVGV-LPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~--~V~sl-~~sp~d~g~~ll~~~~dg-~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 228 (1043)
+.+|.+.. +..|.+ .+.+- .-.|+-++. -..|| +|+ .++..+.+
T Consensus 223 -----~~vP~~~a------~~~hSsEeE~e~sDe~~~d~d~~----~~sD~~tiR-------vPl~~ltg---------- 270 (481)
T KOG0300|consen 223 -----WEVPSNNA------PSDHSSEEEEEHSDEHNRDTDSS----EKSDGHTIR-------VPLMRLTG---------- 270 (481)
T ss_pred -----CcCCCCCC------CCCCCchhhhhcccccccccccc----cccCCceee-------eeeeeeec----------
Confidence 22332111 011100 01000 001110110 01122 222 12333322
Q ss_pred cCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCc
Q 001621 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1043)
Q Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~ 308 (1043)
|...|.+..|. ..|+.++|++-|.+-.+||++++.....
T Consensus 271 -------------------H~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~--------------------- 309 (481)
T KOG0300|consen 271 -------------------HRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNI--------------------- 309 (481)
T ss_pred -------------------cccceEehhhh-cCcceeeeeeccccceeeeeccCceecc---------------------
Confidence 36778888998 8999999999999999999987643210
Q ss_pred ceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCc
Q 001621 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1043)
Q Consensus 309 ~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~ 388 (1043)
+ +|.
T Consensus 310 ----L------------------tGH------------------------------------------------------ 313 (481)
T KOG0300|consen 310 ----L------------------TGH------------------------------------------------------ 313 (481)
T ss_pred ----c------------------cCc------------------------------------------------------
Confidence 0 000
Q ss_pred cEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCC
Q 001621 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1043)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 468 (1043)
|. + |. |
T Consensus 314 ---------------d~-E----Lt-------------------H----------------------------------- 319 (481)
T KOG0300|consen 314 ---------------DS-E----LT-------------------H----------------------------------- 319 (481)
T ss_pred ---------------ch-h----cc-------------------c-----------------------------------
Confidence 00 0 00 0
Q ss_pred CccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCC
Q 001621 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 548 (1043)
Q Consensus 469 ~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~ 548 (1043)
+ ..+|.-++++|.+.|-+.|+||+...- ... .+ +.||+..|+++.|.-|.
T Consensus 320 -------------------c-stHptQrLVvTsSrDtTFRLWDFReaI-~sV-----~V----FQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 320 -------------------C-STHPTQRLVVTSSRDTTFRLWDFREAI-QSV-----AV----FQGHTDTVTSVVFNTDD 369 (481)
T ss_pred -------------------c-ccCCcceEEEEeccCceeEeccchhhc-cee-----ee----ecccccceeEEEEecCC
Confidence 1 234555689999999999999998322 222 22 24899999999999876
Q ss_pred CeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEE
Q 001621 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1043)
Q Consensus 549 ~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~ 628 (1043)
.+++|++|.+|+|||+..-+.. +.. ....++++-|+.|..+..+|.--++..|+
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsp------------------------lAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSP------------------------LAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred -ceeecCCCceEEEeeeccccCc------------------------cee-eecCCccceeEeecCCceEEeccCCceEE
Confidence 5789999999999999753321 111 23567899999999999999999999999
Q ss_pred EEEcCCceEEEEeec--CCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 629 VLDMNLLSVLFFTDD--ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 629 vwD~~~~~~l~~~~~--~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
+||+.+.++-. +.- ..++..-|++.+|... .+. .-||++.-|..+.-|...+
T Consensus 424 lfDlnG~RlaR-lPrtsRqgHrRMV~c~AW~ee-------------------hp~-cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 424 LFDLNGNRLAR-LPRTSRQGHRRMVTCCAWLEE-------------------HPA-CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred EEecCCCcccc-CCcccccccceeeeeeecccc-------------------Ccc-cccccccccceeeeeEecc
Confidence 99998876532 111 1135677999999732 121 2389999999999998653
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.6e-17 Score=184.91 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=120.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
+..+.+.++++|+..+-+|+||..+.. . -+++.||+.-|.+|-.++||+.+++|+.||+|++||+...
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~----k-------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCK----K-------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred ecCCcceEEEecCcccceEEecccccc----c-------eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-
Confidence 344566789999999999999998876 1 1245699999999999999999999999999999999763
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~ 649 (1043)
+|...+..|...|.++..+|+=.++.+|+.||.|..=|+++++... .-++ -..
T Consensus 246 ------------------------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lick--~da 298 (735)
T KOG0308|consen 246 ------------------------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST-LICK--EDA 298 (735)
T ss_pred ------------------------ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe-Eeec--CCC
Confidence 2345678899999999999999999999999999999999863321 1122 246
Q ss_pred CeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
||..+....+.+ -+.++|.|+.|.-|..+.
T Consensus 299 Pv~~l~~~~~~~----------------------~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 299 PVLKLHLHEHDN----------------------SVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred chhhhhhccccC----------------------CceeeeccccceecCCcc
Confidence 788888763321 158999999999998654
No 110
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=161.59 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=190.7
Q ss_pred ecccCCCCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 30 VHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
.-+||.+.|-.++++|.. .++|+++.|..|++||.....++.....+..=..+.|+|+++++++++.|..|...|.++.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 347899999999999976 6999999999999999988888877766555567889999999999999999999999999
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
+.+.+.+..-.+.-+.+.-++++++.....|+|.|..|..-+. . +. ..+|.....||.|.|+
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp--v---~s------------i~AH~snCicI~f~p~- 200 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP--V---QS------------IKAHPSNCICIEFDPD- 200 (313)
T ss_pred ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc--c---cc------------cccCCcceEEEEECCC-
Confidence 9999998888889999998888888888889999988875221 1 11 2357788999999994
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
|+++++|+.|-.+.|||+.+--+.+.+.. .+=+|..+.|+ -||++||+|
T Consensus 201 -GryfA~GsADAlvSLWD~~ELiC~R~isR-----------------------------ldwpVRTlSFS-~dg~~lASa 249 (313)
T KOG1407|consen 201 -GRYFATGSADALVSLWDVDELICERCISR-----------------------------LDWPVRTLSFS-HDGRMLASA 249 (313)
T ss_pred -CceEeeccccceeeccChhHhhhheeecc-----------------------------ccCceEEEEec-cCcceeecc
Confidence 99999999999999999998766655532 15679999996 899999999
Q ss_pred EcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCC
Q 001621 269 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1043)
Q Consensus 269 ~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~ 336 (1043)
++|..|-|=++++|..... + ....|...++|.. ...||+++.++
T Consensus 250 SEDh~IDIA~vetGd~~~e-----------I-----~~~~~t~tVAWHP--------k~~LLAyA~dd 293 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWE-----------I-----PCEGPTFTVAWHP--------KRPLLAYACDD 293 (313)
T ss_pred CccceEEeEecccCCeEEE-----------e-----eccCCceeEEecC--------CCceeeEEecC
Confidence 9999999999998875432 1 1344667788853 23577777665
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=2.4e-17 Score=173.72 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=109.8
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 75 SQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~-~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
|...|.+|+=.|+. ..+++++.||.|++||+.++.++.++..| +.|..++++. ..+++.++|.+|+.|.++....
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~- 141 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPL- 141 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcc-
Confidence 56778888888876 56899999999999999999999999866 7999999988 5566777888999999887311
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCC
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1043)
..+. ..+.+..|.-+-. ++.++++++ .|.|||.....+++.+.-
T Consensus 142 -----~til-------------g~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smsw-------------- 185 (433)
T KOG0268|consen 142 -----HTIL-------------GKSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSW-------------- 185 (433)
T ss_pred -----eeee-------------ccccccccccccc--cccccccCc--eeeecccccCCccceeec--------------
Confidence 1111 1234455554443 333555544 467999987777665532
Q ss_pred CCCCCcccCccCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEcCCCC
Q 001621 233 EGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 233 ~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg 282 (1043)
....|.++.|+ |.. ..|+++.+|++|.++|+.++
T Consensus 186 ---------------G~Dti~svkfN-pvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 186 ---------------GADSISSVKFN-PVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ---------------CCCceeEEecC-CCcchheeeeccCCceEEEecccC
Confidence 04568888887 665 45667778999999998654
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2e-16 Score=171.62 Aligned_cols=161 Identities=14% Similarity=0.197 Sum_probs=126.0
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--ceeEEeecC-CCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeC
Q 001621 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCLKWE-SNITAFSVISGSH-FMYIGDENGLMSVIKYDA 148 (1043)
Q Consensus 73 ~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~--~~l~~~~~~-~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~ 148 (1043)
.+...+|++++|+|....|++++-|++++++.+..+ ..++++... .+|.+..|.|+|. .+++++...-+..|++.
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle- 288 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE- 288 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc-
Confidence 455789999999999999999999999999998754 467777655 6899999999999 88888887766666654
Q ss_pred CCCeEeeeceeecccccccccCCCCCC-CCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCccccccccc
Q 001621 149 DEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1043)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~ 227 (1043)
..++.+ ...+ .++ ...+.....+|+ ++.|++.+..|.|.|-...+++.+..+.-
T Consensus 289 -~ak~~k--~~~~-----------~g~e~~~~e~FeVShd--~~fia~~G~~G~I~lLhakT~eli~s~Ki--------- 343 (514)
T KOG2055|consen 289 -TAKVTK--LKPP-----------YGVEEKSMERFEVSHD--SNFIAIAGNNGHIHLLHAKTKELITSFKI--------- 343 (514)
T ss_pred -cccccc--ccCC-----------CCcccchhheeEecCC--CCeEEEcccCceEEeehhhhhhhhheeee---------
Confidence 344442 1111 111 234566777884 77899999999999999988887766532
Q ss_pred ccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
.+.|..++|+ .+|..|+..+.+|.|.+||+..
T Consensus 344 ---------------------eG~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 344 ---------------------EGVVSDFTFS-SDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred ---------------------ccEEeeEEEe-cCCcEEEEEcCCceEEEEecCC
Confidence 5779999997 8999999999999999999854
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=5e-17 Score=174.14 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=169.7
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
..+|-.+.++.+.|+++++.+.+++.|+.+++|+.+..+...++. |...|+++.|......+|+++.|.+|++||+..+
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 346788889999999999999999999999999998776654443 6789999999988777999999999999999999
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
.+..++...+.+..++.. ...+++|--|+.||.|+....... +.++ -.+.|++|..+++
T Consensus 294 ~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~-----~sv~-------------~gg~vtSl~ls~~- 352 (459)
T KOG0288|consen 294 YCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKT-----RSVP-------------LGGRVTSLDLSMD- 352 (459)
T ss_pred heeccccccccccceEec--ceeeeecccccceEEEeccCCcee-----eEee-------------cCcceeeEeeccC-
Confidence 999998887877777776 445778888999999987653322 2223 2358999999994
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
|..|++++.|.++.+.|+++..+...+....+ .+ ...++.++|+ |++.++++|
T Consensus 353 -g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~---------------k~----------asDwtrvvfS-pd~~YvaAG 405 (459)
T KOG0288|consen 353 -GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF---------------KC----------ASDWTRVVFS-PDGSYVAAG 405 (459)
T ss_pred -CeEEeeecCCCceeeeecccccEEEEeecccc---------------cc----------ccccceeEEC-CCCceeeec
Confidence 88899999999999999999887766532000 01 2347889995 999999999
Q ss_pred EcCCcEEEEcCCCCCccc
Q 001621 269 YIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 269 ~~DG~I~iWd~~tg~~~~ 286 (1043)
+.||.|.+|++.++++..
T Consensus 406 S~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEK 423 (459)
T ss_pred cCCCcEEEEEccCceEEE
Confidence 999999999999987643
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=3.2e-16 Score=170.36 Aligned_cols=213 Identities=18% Similarity=0.241 Sum_probs=172.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
.+|...+.++|.+|||++||+|..|..|.||+.+..+.+..+ .|+..|.+++|-.+-..|++++.|..|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 388889999999999999999999999999999888777654 4678999999998888899999999999999999888
Q ss_pred eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 111 ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 111 l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
+.++..| +.|.++....-.+.+-+|..|.++++|++.. ..++. | +++.+.+.|++|--+
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqli---f--------------rg~~~sidcv~~In~-- 338 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLI---F--------------RGGEGSIDCVAFIND-- 338 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceee---e--------------eCCCCCeeeEEEecc--
Confidence 8877654 7899999888888999999999999999944 33443 2 234567899998753
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
. .+++|+.+|.|.||++...++++.... ++ +..+..+.+ .++..|++++-. |....+++|+
T Consensus 339 ~-HfvsGSdnG~IaLWs~~KKkplf~~~~--------AH-----gv~~~~~~~----~~~~Witsla~i-~~sdL~asGS 399 (479)
T KOG0299|consen 339 E-HFVSGSDNGSIALWSLLKKKPLFTSRL--------AH-----GVIPELDPV----NGNFWITSLAVI-PGSDLLASGS 399 (479)
T ss_pred c-ceeeccCCceEEEeeecccCceeEeec--------cc-----cccCCcccc----ccccceeeeEec-ccCceEEecC
Confidence 3 499999999999999999998876532 11 000000111 124589999986 9999999999
Q ss_pred cCCcEEEEcCCCCC
Q 001621 270 IDGDILLWNTSTTA 283 (1043)
Q Consensus 270 ~DG~I~iWd~~tg~ 283 (1043)
.+|.|++|-+.++-
T Consensus 400 ~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGL 413 (479)
T ss_pred CCCceEEEEecCCc
Confidence 99999999998874
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.1e-15 Score=158.24 Aligned_cols=286 Identities=17% Similarity=0.260 Sum_probs=180.4
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCe
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V 252 (1043)
.....|.+|+|+|.. ..++++++.||+|++|+++.. ..+... ...+.++|
T Consensus 25 pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~ka----------------------------~~~~~~Pv 75 (347)
T KOG0647|consen 25 PPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVPKA----------------------------QQSHDGPV 75 (347)
T ss_pred CcccchheeEecccc-CceEEecccCCceEEEEEecCCcccchh----------------------------hhccCCCe
Confidence 345679999999964 445778999999999999873 332111 01247899
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEe
Q 001621 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVY 332 (1043)
Q Consensus 253 ~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~ 332 (1043)
.++||+ .+|..+++|+.|+.+++||+.+++..+ .+.|..||..++|.... ...+|++
T Consensus 76 L~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q~~~----------------v~~Hd~pvkt~~wv~~~------~~~cl~T 132 (347)
T KOG0647|consen 76 LDVCWS-DDGSKVFSGGCDKQAKLWDLASGQVSQ----------------VAAHDAPVKTCHWVPGM------NYQCLVT 132 (347)
T ss_pred EEEEEc-cCCceEEeeccCCceEEEEccCCCeee----------------eeecccceeEEEEecCC------CcceeEe
Confidence 999996 999999999999999999999986433 12366799999998632 3568899
Q ss_pred cCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeec
Q 001621 333 GGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLL 412 (1043)
Q Consensus 333 gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l 412 (1043)
|+.| .+|..|+..-+..+ ..+.||.. +-.+.++ .| .++|.+.+..+.+|+..+-
T Consensus 133 GSWD----KTlKfWD~R~~~pv------~t~~LPeR--vYa~Dv~---------~p-m~vVata~r~i~vynL~n~---- 186 (347)
T KOG0647|consen 133 GSWD----KTLKFWDTRSSNPV------ATLQLPER--VYAADVL---------YP-MAVVATAERHIAVYNLENP---- 186 (347)
T ss_pred cccc----cceeecccCCCCee------eeeeccce--eeehhcc---------Cc-eeEEEecCCcEEEEEcCCC----
Confidence 9887 67888876432211 12222221 1111111 11 2445566677777764210
Q ss_pred ccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccC
Q 001621 413 SQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCH 492 (1043)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s 492 (1043)
+ ..+.. +. + ||+- ..+++ +..
T Consensus 187 ---------~-te~k~----~~-------------------------------------S----pLk~---Q~R~v-a~f 207 (347)
T KOG0647|consen 187 ---------P-TEFKR----IE-------------------------------------S----PLKW---QTRCV-ACF 207 (347)
T ss_pred ---------c-chhhh----hc-------------------------------------C----cccc---eeeEE-EEE
Confidence 0 00000 00 0 0110 01123 344
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
+++..++-|+-.|.|-|-.+..+.......++-+-..-...+.-.+|++|+|.|....||+++.||+...||-......
T Consensus 208 ~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL- 286 (347)
T KOG0647|consen 208 QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL- 286 (347)
T ss_pred ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh-
Confidence 5666678899999998888777632221222110000000011237899999999999999999999999997654322
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEE
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~G 621 (1043)
.....|..+|+|.+|+.+|.++|-+
T Consensus 287 ------------------------k~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 287 ------------------------KTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ------------------------hccCcCCCccceeEecCCCCEEEEE
Confidence 2236799999999999999987643
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=2.2e-16 Score=162.18 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=169.2
Q ss_pred ecccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCce------------EEE--ec--CCCCCeEEEEEec-CCCEE
Q 001621 30 VHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIE------------GLL--IS--PSQLPYKNLEFLQ-NQGFL 91 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~------------~~~--~~--~~~~~V~~l~Fs~-d~~~L 91 (1043)
+..-|.+.|+.|..++. |+++.+|..||.|.|||+++.. ++. ++ .|+..|..+.|.| |.+.+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 33446699999999994 8999999999999999986643 111 11 1456899999999 67889
Q ss_pred EEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCC---CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccc
Q 001621 92 ISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1043)
Q Consensus 92 vs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~---~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1043)
.+++-|.+++|||.+|-+....|..++.|..-+++|-. .++++|+.+-.|++-++... .+. ..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG--s~s---H~--------- 183 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG--SFS---HT--------- 183 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--cce---ee---------
Confidence 99999999999999999999999999999999988864 37889999988888766542 222 11
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 169 ~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
..+|...|.+|.|+|..+- .|++|+.||.|++||++.. .+...+.. +....++. +-.+..
T Consensus 184 ---LsGHr~~vlaV~Wsp~~e~-vLatgsaDg~irlWDiRrasgcf~~lD~-------hn~k~~p~--------~~~n~a 244 (397)
T KOG4283|consen 184 ---LSGHRDGVLAVEWSPSSEW-VLATGSADGAIRLWDIRRASGCFRVLDQ-------HNTKRPPI--------LKTNTA 244 (397)
T ss_pred ---eccccCceEEEEeccCcee-EEEecCCCceEEEEEeecccceeEEeec-------ccCccCcc--------cccccc
Confidence 1367889999999998544 4788999999999999864 34444432 10000010 111334
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCcc
Q 001621 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST 285 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~ 285 (1043)
|...|.++||. .+|.++++.+.|..+++|+..+|+..
T Consensus 245 h~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 245 HYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ccceeeeeeec-ccchhhhhccCccceEEeecccCccc
Confidence 68899999997 89999999999999999999988643
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.9e-15 Score=153.94 Aligned_cols=223 Identities=13% Similarity=0.153 Sum_probs=173.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCce
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSL 110 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~--d~~I~vWdl~t~~~ 110 (1043)
..+.|+++.|+++|.+|++.+.|-+|+|||..+...+.... .+..|-.++|......++.++. |.+|+.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 56789999999999999999999999999987766665554 3568888999887778888887 89999999999999
Q ss_pred eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee----e------c----eeecccc-c-----cccc
Q 001621 111 ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ----L------P----YNISADA-L-----SEKA 169 (1043)
Q Consensus 111 l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~----~------~----~~i~~~~-~-----~~~~ 169 (1043)
++.+.+| ..|+.+.++|-++.+++++.|.+|++|++...++.-.. . | |.+.... . .+.+
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 9999977 68999999999999999999999999998754432111 0 0 0000000 0 0010
Q ss_pred --------CCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccC
Q 001621 170 --------GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1043)
Q Consensus 170 --------~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 241 (1043)
....+.......|.|+| +|+.||++...+.+.+.|.-+|..+..+.. + +..
T Consensus 173 dkgPF~tf~i~~~~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-------~--------~~~---- 231 (311)
T KOG1446|consen 173 DKGPFTTFSITDNDEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFDGTVKSTFSG-------Y--------PNA---- 231 (311)
T ss_pred CCCCceeEccCCCCccceeeeEEcC--CCCEEEEEeCCCcEEEEEccCCcEeeeEee-------c--------cCC----
Confidence 01124467789999999 599999999999999999999998877643 1 000
Q ss_pred ccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCcc
Q 001621 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST 285 (1043)
Q Consensus 242 ~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~ 285 (1043)
..-..+++|. |||++|++|+.||+|.+|+++++...
T Consensus 232 -------~~~~~~a~ft-Pds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 232 -------GNLPLSATFT-PDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred -------CCcceeEEEC-CCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 1122567886 99999999999999999999888643
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=6e-16 Score=174.03 Aligned_cols=208 Identities=15% Similarity=0.218 Sum_probs=160.2
Q ss_pred EEEEcC-CCCEEEEEEcCCcEEEEcCCCce------EEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--c
Q 001621 40 ILAFDH-IQRLLAIATLDGRIKVIGGDGIE------GLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--S 109 (1043)
Q Consensus 40 ~lafsp-~g~lLAvgt~dG~I~v~~~~~~~------~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~--~ 109 (1043)
++..|. .+++|.+|+.||.|++|+..... ....++ |...|..+....++..|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 455554 56789999999999999864321 122232 4567888888889889999999999999999887 4
Q ss_pred eeEEeecC-CCEEEEEE-eCCCCEEEEEeCCCcEEEEEEeCCCCeEeeecee-ecccccccccCCCCCCCCCeEEEEecC
Q 001621 110 LACCLKWE-SNITAFSV-ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN-ISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 110 ~l~~~~~~-~~Vtav~~-sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~-i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
+..++..| ..|.|+++ -++...+++|+-|+.|.||+++....++.. .+. ++... ...++..+|.+++-++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~-s~n~~t~~s------l~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA-SFNNVTVNS------LGSGPKDSIYSLAMNQ 181 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh-hcccccccc------CCCCCccceeeeecCC
Confidence 66677655 78999999 788889999999999999999864322220 111 11111 1235678999999999
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
. |..++.|+..+.+++||-++.+.+..+.+ |...|.++..+ +||.+++
T Consensus 182 t--~t~ivsGgtek~lr~wDprt~~kimkLrG-----------------------------HTdNVr~ll~~-dDGt~~l 229 (735)
T KOG0308|consen 182 T--GTIIVSGGTEKDLRLWDPRTCKKIMKLRG-----------------------------HTDNVRVLLVN-DDGTRLL 229 (735)
T ss_pred c--ceEEEecCcccceEEeccccccceeeeec-----------------------------cccceEEEEEc-CCCCeEe
Confidence 5 77788899999999999999877666544 36779999886 9999999
Q ss_pred EEEcCCcEEEEcCCCCCccc
Q 001621 267 VGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 267 tg~~DG~I~iWd~~tg~~~~ 286 (1043)
++++||+|++||+.-.+++.
T Consensus 230 s~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred ecCCCceEEeeeccccceee
Confidence 99999999999997665544
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.3e-14 Score=161.89 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=96.8
Q ss_pred eeecccCCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCC-ceEEE------ecCCCCCeEEEEEecCCCEEEEEECCCc
Q 001621 28 IAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDG-IEGLL------ISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~-~~~~~------~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~ 99 (1043)
+....+|...|+.+.|+| ...|||+|+.|..|+||.... .+..+ ..+....|.++.|.|...-|+..+..|.
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 344568889999999999 457999999999999998762 22222 2233557899999984444777778999
Q ss_pred EEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEE
Q 001621 100 IQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1043)
Q Consensus 100 I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~ 146 (1043)
+.|||+.+++.+.++..+ ..|.+..++.||.++++.+.|..|+|++-
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCC
Confidence 999999999999988766 68999999999999999999999988764
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.9e-15 Score=152.15 Aligned_cols=268 Identities=18% Similarity=0.263 Sum_probs=175.2
Q ss_pred CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeE---EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 175 ~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
|...|..+...- .|++|++++.|++|+|+.++.+.. +..+.+ |..+
T Consensus 10 H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-----------------------------h~GP 58 (299)
T KOG1332|consen 10 HEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-----------------------------HSGP 58 (299)
T ss_pred hhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecC-----------------------------CCCC
Confidence 333444444333 488999999999999999987643 223322 4889
Q ss_pred eEEEEEecCC-CCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEE
Q 001621 252 ISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 330 (1043)
Q Consensus 252 V~sl~w~sp~-g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~ll 330 (1043)
|..+.|.+|. |.+||+++-||.|.+|.-.+++-.+... ...+...|.++.|... +.+-+|
T Consensus 59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e-------------~~~h~~SVNsV~waph------eygl~L 119 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE-------------HAAHSASVNSVAWAPH------EYGLLL 119 (299)
T ss_pred eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh-------------hhhhcccceeeccccc------ccceEE
Confidence 9999998654 8999999999999999988875433210 1124557778877432 356677
Q ss_pred EecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeeccccee
Q 001621 331 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 410 (1043)
Q Consensus 331 v~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~ 410 (1043)
+++++| ..+.++.++-.. . |+..
T Consensus 120 acasSD----G~vsvl~~~~~g----------------------------------------------~---w~t~---- 142 (299)
T KOG1332|consen 120 ACASSD----GKVSVLTYDSSG----------------------------------------------G---WTTS---- 142 (299)
T ss_pred EEeeCC----CcEEEEEEcCCC----------------------------------------------C---ccch----
Confidence 777665 345555433110 0 1100
Q ss_pred ecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccc
Q 001621 411 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 490 (1043)
Q Consensus 411 ~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~ 490 (1043)
. ....|...++++...|....+ ++-++.+ .
T Consensus 143 --------------k---i~~aH~~GvnsVswapa~~~g---------------------------~~~~~~~----~-- 172 (299)
T KOG1332|consen 143 --------------K---IVFAHEIGVNSVSWAPASAPG---------------------------SLVDQGP----A-- 172 (299)
T ss_pred --------------h---hhhccccccceeeecCcCCCc---------------------------cccccCc----c--
Confidence 0 011144445555544321110 0000000 0
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCC----CeEEEEecCccEEEEEec
Q 001621 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 491 ~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~----~~La~g~~dG~V~i~~~~ 566 (1043)
..-..|++|+.|..|+||+...+. ..++. .+.+|...|..+||+|.. .+||++++||+|.||...
T Consensus 173 --~~~krlvSgGcDn~VkiW~~~~~~----w~~e~-----~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 173 --AKVKRLVSGGCDNLVKIWKFDSDS----WKLER-----TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred --cccceeeccCCccceeeeecCCcc----hhhhh-----hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 112469999999999999998875 22221 245899999999999975 478999999999999987
Q ss_pred CCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 567 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.+...- -..++.....++..+.||..|..||+++.|..|.+|--
T Consensus 242 ~e~e~w----------------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 242 EEYEPW----------------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CccCcc----------------------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 432110 01234556788999999999999999999999999974
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.1e-15 Score=154.28 Aligned_cols=295 Identities=14% Similarity=0.161 Sum_probs=178.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE
Q 001621 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~ 197 (1043)
.-|+++.|++.|+.|++++.|++|+||+++.+.+. |.+...| +.|.+.|+.|.|-+-.-|..+++++
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-----W~~Ts~W--------rah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-----WSCTSSW--------RAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----eEEeeeE--------EecCCcEEEEEecCccccceEEEEe
Confidence 45899999999999999999999999998766554 3333333 3578899999996555798899999
Q ss_pred CCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCC--CCEEEEEEcCCcEE
Q 001621 198 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYIDGDIL 275 (1043)
Q Consensus 198 ~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~--g~~l~tg~~DG~I~ 275 (1043)
.|+++.||.-.....-.. + +.......+ ......|+.++|. |. |-.+|+++.||.||
T Consensus 81 ~Drtv~iWEE~~~~~~~~-~-~~Wv~~ttl------------------~DsrssV~DV~Fa-P~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAH-G-RRWVRRTTL------------------VDSRSSVTDVKFA-PKHLGLKLAAASADGILR 139 (361)
T ss_pred cCCceeeeeecccccccc-c-ceeEEEEEe------------------ecCCcceeEEEec-chhcceEEEEeccCcEEE
Confidence 999999998532111000 0 000000000 0125789999996 76 77899999999999
Q ss_pred EEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCC-cceEEEEEcCccccc
Q 001621 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGS-EEVLTVLSLEWSSGM 354 (1043)
Q Consensus 276 iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~-~~~ltv~~l~~~~~~ 354 (1043)
+++..+.-....-+--+ .+.-+.-.++.+..+..++.|+.. .....+++.|.++... -+.+.+
T Consensus 140 IYEA~dp~nLs~W~Lq~--Ei~~~~~pp~~~~~~~~CvsWn~s-----r~~~p~iAvgs~e~a~~~~~~~I--------- 203 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQH--EIQNVIDPPGKNKQPCFCVSWNPS-----RMHEPLIAVGSDEDAPHLNKVKI--------- 203 (361)
T ss_pred EEecCCccccccchhhh--hhhhccCCcccccCcceEEeeccc-----cccCceEEEEcccCCccccceEE---------
Confidence 99987653222100000 000000112234557788888742 2234455555443100 001111
Q ss_pred ccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCC
Q 001621 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1043)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 434 (1043)
+.|+.. ...+. ....++.|.
T Consensus 204 ----------------------------------------------ye~~e~-----------~rKw~---kva~L~d~~ 223 (361)
T KOG2445|consen 204 ----------------------------------------------YEYNEN-----------GRKWL---KVAELPDHT 223 (361)
T ss_pred ----------------------------------------------EEecCC-----------cceee---eehhcCCCC
Confidence 111110 00000 111234566
Q ss_pred CcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCC
Q 001621 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1043)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~ 514 (1043)
++|+.++++|.- | ..-.+||+++.|| ||||.++.
T Consensus 224 dpI~di~wAPn~---------------------------------G------------r~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 224 DPIRDISWAPNI---------------------------------G------------RSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred Ccceeeeecccc---------------------------------C------------CceeeEEEeecCc-EEEEEEee
Confidence 777777775421 0 0113799999999 99999874
Q ss_pred CC--------ceeeeeeccceeeE-EecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 515 PV--------FKLICALDAEVQGI-EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 515 ~~--------l~~l~~l~~~~~~v-~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
.. +.+....+-++..+ .+.+|++.|..|.|.-.|..|++.+.||.||+|+-.-+
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 22 11111111122333 36799999999999999999999999999999987543
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7e-16 Score=168.08 Aligned_cols=219 Identities=17% Similarity=0.203 Sum_probs=166.6
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-- 107 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t-- 107 (1043)
..-.|+.|.||+-+|.|.+|+.|+..|.|++|....+..+..+ .|-.+|++|.|+.|+.++++++.||.|.+|++.+
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 3457999999999999999999999999999999888776444 3567999999999999999999999999999743
Q ss_pred -------CceeEEeecC-CCEEEEEEeCCC--CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCC
Q 001621 108 -------RSLACCLKWE-SNITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1043)
Q Consensus 108 -------~~~l~~~~~~-~~Vtav~~sp~~--~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1043)
-++++.+..| =.|+.+.+.+.+ .++|+.++|.++++|++... .+.. .+.+ ..
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLl-ti~f---------------p~ 218 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLL-TITF---------------PS 218 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--eeeE-EEec---------------CC
Confidence 2456666655 489999998774 58999999999999999874 2321 1222 25
Q ss_pred CeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEE----EeCCcccccccccccCCCCCCCCcccCccCCCCC--CCC
Q 001621 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF----VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE--EKE 251 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~ 251 (1043)
++.+++..|. .+++.+|.++|.|.+.++..-.... ..++ ... +.....-..| .+.
T Consensus 219 si~av~lDpa--e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~---~~~--------------~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 219 SIKAVALDPA--ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR---HEE--------------NTQINVLVGHENESA 279 (476)
T ss_pred cceeEEEccc--ccEEEecCCcceEEeeehhcCCccccccccccc---ccc--------------cceeeeeccccCCcc
Confidence 7899999995 6679999999999888875433110 0111 000 0000000112 358
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCcccc
Q 001621 252 ISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 287 (1043)
Q Consensus 252 V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~ 287 (1043)
|+|++.+ -||..|++|+.||.+.+||+.+.++++.
T Consensus 280 ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 280 ITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eeEEEEe-cCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999996 9999999999999999999998877654
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.1e-13 Score=158.10 Aligned_cols=498 Identities=16% Similarity=0.177 Sum_probs=283.1
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCC---CEEEEEECCCcEEEEECC
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQ---GFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~---~~Lvs~s~d~~I~vWdl~ 106 (1043)
.-|....-..-.|++|++.|...+. ..|+||.....+++..++ +..+++.+.+.|.. .++++++.||+|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3455555556679999999887764 599999998888876655 57899999998854 478899999999999999
Q ss_pred CCceeEEeecCCCEEEEEEeCC----CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEE
Q 001621 107 SRSLACCLKWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1043)
Q Consensus 107 t~~~l~~~~~~~~Vtav~~sp~----~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl 182 (1043)
.+.++.++....++.++.+.|. ...++++.++-.+ +.....+..+.. ..+.+... .....-+-..+.. -.+|
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~-~~~~s~~~~~q~-~~~~~~t~-~~~~~d~~~~~~~-~~~I 166 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI-LTTFSKKLSKQS-SRFVLATF-DSAKGDFLKEHQE-PKSI 166 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeeccccee-eeecccccccce-eeeEeeec-cccchhhhhhhcC-CccE
Confidence 9999999988777777766432 1234455444432 111111000000 00111100 0000000011111 3566
Q ss_pred EecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC
Q 001621 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1043)
Q Consensus 183 ~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g 262 (1043)
.+++. |...++. .+..+.+|++.++. .....+.. +..|...+++.+++ |++
T Consensus 167 ~~~~~--ge~~~i~-~~~~~~~~~v~~~~--~~~~~~~~-----------------------~~~Htf~~t~~~~s-pn~ 217 (792)
T KOG1963|consen 167 VDNNS--GEFKGIV-HMCKIHIYFVPKHT--KHTSSRDI-----------------------TVHHTFNITCVALS-PNE 217 (792)
T ss_pred EEcCC--ceEEEEE-EeeeEEEEEecccc--eeeccchh-----------------------hhhhcccceeEEec-ccc
Confidence 77774 6644444 45566899988765 22211000 11134558899996 999
Q ss_pred CEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcce
Q 001621 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1043)
Q Consensus 263 ~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ 342 (1043)
+++++|..||.|.+|.-...+. .......+-| |..+|..+.|+ + +|..|.+||.+ ..
T Consensus 218 ~~~Aa~d~dGrI~vw~d~~~~~-------~~~t~t~lHW----H~~~V~~L~fS-------~-~G~~LlSGG~E----~V 274 (792)
T KOG1963|consen 218 RYLAAGDSDGRILVWRDFGSSD-------DSETCTLLHW----HHDEVNSLSFS-------S-DGAYLLSGGRE----GV 274 (792)
T ss_pred ceEEEeccCCcEEEEecccccc-------ccccceEEEe----cccccceeEEe-------c-CCceEeecccc----eE
Confidence 9999999999999997433110 0111233445 33466777664 3 34556788765 56
Q ss_pred EEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCC
Q 001621 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1043)
Q Consensus 343 ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~ 422 (1043)
+.+|.++.. .. .+--..++++.++...|.+. ...+.+++.++++.....++...+-++- .++
T Consensus 275 Lv~Wq~~T~----~k----qfLPRLgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi--~~~ 336 (792)
T KOG1963|consen 275 LVLWQLETG----KK----QFLPRLGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGI--KPP 336 (792)
T ss_pred EEEEeecCC----Cc----ccccccCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCc--cCC
Confidence 777765422 11 11112466777877765442 2445567778777543322211111110 000
Q ss_pred CccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEe
Q 001621 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1043)
Q Consensus 423 ~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~ 502 (1043)
...+ +.+.+. +.- .+ ++.|--+.++-.+
T Consensus 337 ~~~~------------------------------------k~~~~~---------l~t------~~-~idpr~~~~vln~ 364 (792)
T KOG1963|consen 337 TPST------------------------------------KTRPQS---------LTT------GV-SIDPRTNSLVLNG 364 (792)
T ss_pred Cccc------------------------------------cccccc---------cce------eE-EEcCCCCceeecC
Confidence 0000 000000 000 01 3344333455555
Q ss_pred CCCcEEEEeCCCCCceeeeeeccceeeEEe---c-CCCCCeEEEEEecCCCeEEEEec--------Cc--cEEEEEecCC
Q 001621 503 HDGSVRIWDATYPVFKLICALDAEVQGIEV---A-GSRAPVSTLSFCFINSSLAVGNE--------FG--LVYIYNLNGS 568 (1043)
Q Consensus 503 ~DgtVriWD~~~~~l~~l~~l~~~~~~v~~---~-~~~~~V~~l~fspd~~~La~g~~--------dG--~V~i~~~~~~ 568 (1043)
.-|.|.+||+-+.. .++.++. .+... . -+...|++++++.+|.++++.-. || .++.|.+..+
T Consensus 365 ~~g~vQ~ydl~td~--~i~~~~v--~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDS--TIYKLQV--CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred CCceEEEEeccccc--eeeeEEE--EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 68999999998776 3344432 11100 0 23357899999999999998632 33 3445555443
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC--CcEEEEEeCCCeEEEEEcCCc------eEEEE
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS--GAKLAVGFECGRVAVLDMNLL------SVLFF 640 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d--g~~lA~Gs~dg~V~vwD~~~~------~~l~~ 640 (1043)
... |+ ....+..+|...+.+.++.+. ....++++.||.++||-..+- ...+.
T Consensus 441 ~kt----~~----------------L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 441 SKT----FI----------------LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred cce----eE----------------EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 211 00 001234678776666666443 336899999999999998332 11122
Q ss_pred eecC-CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 641 TDDI-SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 641 ~~~~-~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
.+.. +.+..++++++|+++|. |++.+-|+.|.+||..+.
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGs-----------------------lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGS-----------------------LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EeeeeccccCcccchhhcCCCc-----------------------EEEEecCCEEEEecCCCh
Confidence 1111 12568899999987652 888899999999998884
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.70 E-value=3.5e-15 Score=169.25 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=107.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f 576 (1043)
.++||++|.+||+|...+- +.+ +.+|+.-|..|++-+++ .+++++.||.|++|++..+
T Consensus 153 ~~vTgsaDKtIklWk~~~~----l~t---------f~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge-------- 210 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGGTL----LKT---------FSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE-------- 210 (745)
T ss_pred cEEeccCcceeeeccCCch----hhh---------hccchhheeeeEEecCC-CeEeecCCceEEEEeccCc--------
Confidence 8999999999999987432 233 35899999999999876 5678999999999999542
Q ss_pred eccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEE
Q 001621 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1043)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~f 656 (1043)
++..+.+|+.-|.++...+++..++++++|++++||+... ++..+.+ -...|.+..+
T Consensus 211 ------------------~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e--~~q~I~l---PttsiWsa~~ 267 (745)
T KOG0301|consen 211 ------------------VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE--CVQVITL---PTTSIWSAKV 267 (745)
T ss_pred ------------------eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc--eEEEEec---CccceEEEEE
Confidence 1245689999999999888888999999999999999983 3333322 1235667776
Q ss_pred EeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC
Q 001621 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 657 s~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
-+.| + +++|++||.|+||-...
T Consensus 268 L~Ng---------------------D--Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 268 LLNG---------------------D--IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeCC---------------------C--EEEeccCceEEEEEecc
Confidence 5444 2 89999999999998653
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-14 Score=142.80 Aligned_cols=250 Identities=16% Similarity=0.152 Sum_probs=177.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEE-----ec-CCCCCeEEEEEecC----CCEEEEEE-CCCcEE
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-----IS-PSQLPYKNLEFLQN----QGFLISIT-NDNEIQ 101 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~-----~~-~~~~~V~~l~Fs~d----~~~Lvs~s-~d~~I~ 101 (1043)
-|.+.|.|.+|+|.|++||+|++|.+|++...+...+.. ++ -|...|+.++|..+ +..|++++ .|..|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 367889999999999999999999999995433222221 11 24678999999764 34566665 467888
Q ss_pred EEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 102 VWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 102 vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
+=|-.+|+.++.+..+ +.|-++ ++-++-.+++|++|.+||.|++....+. -.+.++ + + -.....+.|.
T Consensus 167 ~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v-----~~l~~~-~-~---~~glessava 235 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV-----NTLDND-F-H---DGGLESSAVA 235 (350)
T ss_pred EeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecccee-----eeccCc-c-c---CCCcccceeE
Confidence 8899999999999876 667665 4556778999999999999998763211 111111 1 0 0011357899
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecC
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1043)
+|+..|. |++|++|-.|....+||++.++.++.+-. |...|.|+.|+ |
T Consensus 236 av~vdps--grll~sg~~dssc~lydirg~r~iq~f~p-----------------------------hsadir~vrfs-p 283 (350)
T KOG0641|consen 236 AVAVDPS--GRLLASGHADSSCMLYDIRGGRMIQRFHP-----------------------------HSADIRCVRFS-P 283 (350)
T ss_pred EEEECCC--cceeeeccCCCceEEEEeeCCceeeeeCC-----------------------------CccceeEEEeC-C
Confidence 9999995 98888899999999999999999987621 37889999996 9
Q ss_pred CCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCc
Q 001621 261 SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSE 340 (1043)
Q Consensus 261 ~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~ 340 (1043)
...+++|++-|..|++=|+.. .+...+ |+. . .++++..++...|... +-. +++.+.+
T Consensus 284 ~a~yllt~syd~~ikltdlqg-dla~el------~~~--v--v~ehkdk~i~~rwh~~-------d~s-fisssad---- 340 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQG-DLAHEL------PIM--V--VAEHKDKAIQCRWHPQ-------DFS-FISSSAD---- 340 (350)
T ss_pred CceEEEEecccceEEEeeccc-chhhcC------ceE--E--EEeccCceEEEEecCc-------cce-eeeccCc----
Confidence 999999999999999999853 222211 111 1 2346667777888542 222 3444333
Q ss_pred ceEEEEEc
Q 001621 341 EVLTVLSL 348 (1043)
Q Consensus 341 ~~ltv~~l 348 (1043)
++.|+|.+
T Consensus 341 kt~tlwa~ 348 (350)
T KOG0641|consen 341 KTATLWAL 348 (350)
T ss_pred ceEEEecc
Confidence 57788764
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.9e-13 Score=159.84 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=141.8
Q ss_pred ecccCCCCeEEEEEcCCCC---EEEEEEcCCcEEEEcCCCceEEEecCCCCCe---------------------------
Q 001621 30 VHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGLLISPSQLPY--------------------------- 79 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~---lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V--------------------------- 79 (1043)
...++...++.+.++|... ++.+.+.||.|++|+....+.+-......++
T Consensus 52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~ 131 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILT 131 (792)
T ss_pred hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeee
Confidence 4467778888899988654 6779999999999998766554222111110
Q ss_pred --------------------------------EEEEEecCCCEEEEEECCCcEEEEECCCCceeEEee----cC-CCEEE
Q 001621 80 --------------------------------KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WE-SNITA 122 (1043)
Q Consensus 80 --------------------------------~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~----~~-~~Vta 122 (1043)
+.|.+++. +....+--+..+.+|+..++....... .| -.++|
T Consensus 132 ~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~ 210 (792)
T KOG1963|consen 132 TFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITC 210 (792)
T ss_pred ecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhccccee
Confidence 11222222 223333345567788887755111111 11 35899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEEeC-CCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCe
Q 001621 123 FSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1043)
Q Consensus 123 v~~sp~~~~l~vG~~dG~v~v~~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~ 201 (1043)
++++|.++++++|..+|.|.||.=-. +...+. +-.+.| |..+|.+++|+++ |..|++|+..|.
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t--~t~lHW------------H~~~V~~L~fS~~--G~~LlSGG~E~V 274 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSET--CTLLHW------------HHDEVNSLSFSSD--GAYLLSGGREGV 274 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccccccccc--ceEEEe------------cccccceeEEecC--CceEeecccceE
Confidence 99999999999999999999996322 222222 123333 5678999999994 888999999999
Q ss_pred EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 202 I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
+.+|.+.+++. +.+.. -..+|..+.++ ||+...+...+|+.|.+-...+
T Consensus 275 Lv~Wq~~T~~k-qfLPR-----------------------------Lgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 275 LVLWQLETGKK-QFLPR-----------------------------LGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EEEEeecCCCc-ccccc-----------------------------cCCeeEEEEEc-CCCCeEEEEecCceEEEEeccc
Confidence 99999999873 22210 04679999996 9999999999999999988766
Q ss_pred CC
Q 001621 282 TA 283 (1043)
Q Consensus 282 g~ 283 (1043)
..
T Consensus 324 l~ 325 (792)
T KOG1963|consen 324 LE 325 (792)
T ss_pred hh
Confidence 54
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.1e-15 Score=160.92 Aligned_cols=290 Identities=18% Similarity=0.286 Sum_probs=195.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEE-Eec--CCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCcee
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LIS--PSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSLA 111 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~-~~~--~~~~~V~~l~Fs~d~~-~Lvs~s~d~~I~vWdl~t~~~l 111 (1043)
+.|+++.|+|.-.+|.+|..||+++||.+++..-. ++. -...||.+.+|.|+|. .+++++....+..||+++++..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 56999999999999999999999999987654221 111 1367999999999988 8888888999999999998754
Q ss_pred EE--eec--CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 112 CC--LKW--ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 112 ~~--~~~--~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
.. ... +..+..+.++|+++++++.+.+|.|.++...+ ..+. +.++++ +.|..++|+.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli-~s~Kie---------------G~v~~~~fsS- 354 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELI-TSFKIE---------------GVVSDFTFSS- 354 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhh-heeeec---------------cEEeeEEEec-
Confidence 32 222 24688999999999999999999987765433 2222 123333 5688999996
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
+|+.|++++.+|.|.+||+++..++..+.- + | .-.-+++|-+ ++|+++||
T Consensus 355 -dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-------~------G---------------~v~gts~~~S-~ng~ylA~ 404 (514)
T KOG2055|consen 355 -DSKELLASGGTGEVYVWNLRQNSCLHRFVD-------D------G---------------SVHGTSLCIS-LNGSYLAT 404 (514)
T ss_pred -CCcEEEEEcCCceEEEEecCCcceEEEEee-------c------C---------------ccceeeeeec-CCCceEEe
Confidence 588899999999999999999988877632 0 0 1123567774 99999999
Q ss_pred EEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEE
Q 001621 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
|+..|.|-|||.++...- ....|+..+.- -...|..+.| ++ ++++|+..+.. ..+.+++..
T Consensus 405 GS~~GiVNIYd~~s~~~s-----~~PkPik~~dN----Ltt~Itsl~F-------n~-d~qiLAiaS~~--~knalrLVH 465 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFAS-----TNPKPIKTVDN----LTTAITSLQF-------NH-DAQILAIASRV--KKNALRLVH 465 (514)
T ss_pred ccCcceEEEeccchhhcc-----CCCCchhhhhh----hheeeeeeee-------Cc-chhhhhhhhhc--cccceEEEe
Confidence 999999999997654221 11233333211 0124555644 44 45677665543 235566655
Q ss_pred cCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeec
Q 001621 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDN 405 (1043)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~ 405 (1043)
+...+-+.+. +..-..-+.+.+|.+.|.++. +.+....|++.+|..
T Consensus 466 vPS~TVFsNf----P~~n~~vg~vtc~aFSP~sG~--------lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 466 VPSCTVFSNF----PTSNTKVGHVTCMAFSPNSGY--------LAVGNEAGRVHLFKL 511 (514)
T ss_pred ccceeeeccC----CCCCCcccceEEEEecCCCce--------EEeecCCCceeeEee
Confidence 4321111110 000111234566777776542 667778889888763
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=4.8e-15 Score=153.38 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=138.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-- 108 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~-- 108 (1043)
.||...|-.++-+..+.++++++.|.+-+||..+.+.++.+.. |.+.|.++.|++.+..+++++.|++..||...-.
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 5899999999999999999999999999999999999888765 5679999999999999999999999999984321
Q ss_pred --cee--EEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 109 --SLA--CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 109 --~~l--~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
+.. .....+..+-+- +.+... .|+..+ .+... .++|- . ...+|.+.|.+..|
T Consensus 225 vP~~~a~~~hSsEeE~e~s--De~~~d-----~d~~~~-----sD~~t-----iRvPl---~----~ltgH~~vV~a~dW 280 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHS--DEHNRD-----TDSSEK-----SDGHT-----IRVPL---M----RLTGHRAVVSACDW 280 (481)
T ss_pred CCCCCCCCCCCchhhhhcc--cccccc-----cccccc-----cCCce-----eeeee---e----eeeccccceEehhh
Confidence 111 111111111111 000000 011110 01001 11221 0 11357888999989
Q ss_pred cCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
-.- |.++++++.|.+..|||++++.++..+.+ |+.+.+-++-+ |+.+.
T Consensus 281 L~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtG-----------------------------Hd~ELtHcstH-ptQrL 328 (481)
T KOG0300|consen 281 LAG--GQQMVTASWDRTANLWDVETGEVVNILTG-----------------------------HDSELTHCSTH-PTQRL 328 (481)
T ss_pred hcC--cceeeeeeccccceeeeeccCceeccccC-----------------------------cchhccccccC-CcceE
Confidence 773 88899999999999999999999887755 25566666665 99999
Q ss_pred EEEEEcCCcEEEEcCC
Q 001621 265 LAVGYIDGDILLWNTS 280 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~ 280 (1043)
++|.+.|-+.++||+.
T Consensus 329 VvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFR 344 (481)
T ss_pred EEEeccCceeEeccch
Confidence 9999999999999985
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=174.16 Aligned_cols=297 Identities=19% Similarity=0.204 Sum_probs=189.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEE
Q 001621 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1043)
Q Consensus 116 ~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~ 195 (1043)
.+....++.+.++-..+++++.. .+.|+.+........ .++.. + ........+..|.|+.. +.++|++
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~---~~~~~----k---~kqn~~~S~~DVkW~~~-~~NlIAT 105 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK---CNHRF----K---TKQNKFYSAADVKWGQL-YSNLIAT 105 (839)
T ss_pred cccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc---eeeec----c---cccceeeehhhcccccc-hhhhhee
Confidence 34567788888887777666543 356666654321111 11110 0 00112335667888865 4667999
Q ss_pred EECCCeEEEEEccC---CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 196 AYENALVILWDVSE---AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 196 ~~~dg~I~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
++.+|.|.+||+.. .+.+..+. .|...+.+++|++....+|++|+.||
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~-----------------------------EH~Rs~~~ldfh~tep~iliSGSQDg 156 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFN-----------------------------EHERSANKLDFHSTEPNILISGSQDG 156 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhh-----------------------------hhccceeeeeeccCCccEEEecCCCc
Confidence 99999999999986 23222221 14788999999866778999999999
Q ss_pred cEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCccc
Q 001621 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1043)
Q Consensus 273 ~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~ 352 (1043)
+|++||+...+....- .. ..+.|+.|+|+. ..+..+
T Consensus 157 ~vK~~DlR~~~S~~t~-------------~~--nSESiRDV~fsp-------~~~~~F---------------------- 192 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTF-------------RS--NSESIRDVKFSP-------GYGNKF---------------------- 192 (839)
T ss_pred eEEEEeeecccccccc-------------cc--cchhhhceeecc-------CCCceE----------------------
Confidence 9999999876543310 00 122344454432 112222
Q ss_pred ccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCC
Q 001621 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1043)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 432 (1043)
+....+|-|..||.. + |
T Consensus 193 ---------------------------------------~s~~dsG~lqlWDlR-------q------------p----- 209 (839)
T KOG0269|consen 193 ---------------------------------------ASIHDSGYLQLWDLR-------Q------------P----- 209 (839)
T ss_pred ---------------------------------------EEecCCceEEEeecc-------C------------c-----
Confidence 233344556667731 0 0
Q ss_pred CCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeC
Q 001621 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1043)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~ 512 (1043)
..|.....++. | .+.++ .++|++.+|||||-|++|||||.
T Consensus 210 --------------------~r~~~k~~AH~----------------G---pV~c~-nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 210 --------------------DRCEKKLTAHN----------------G---PVLCL-NWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred --------------------hhHHHHhhccc----------------C---ceEEE-eecCCCceeeecCCCccEEEEec
Confidence 01222222211 1 11123 57889999999999999999999
Q ss_pred CCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCC-eEEEEe--cCccEEEEEecCCCcccceeeeccCCCceeeecC
Q 001621 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1043)
Q Consensus 513 ~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~-~La~g~--~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~ 589 (1043)
.++...++.+++. ..+|.+|.|-|+.. +||+++ .|-.|+|||+...
T Consensus 250 t~~~~~~~~tInT----------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--------------------- 298 (839)
T KOG0269|consen 250 TDSRAKPKHTINT----------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--------------------- 298 (839)
T ss_pred cCCCccceeEEee----------cceeeeeeeccCccchhhhhhccccceEEEEeeccc---------------------
Confidence 9888776666642 14899999999865 556554 4678999999863
Q ss_pred CCcceeeEEecCCCCCEEEEEEcC-CCcEEEEEeCCCeEEEEEcCC
Q 001621 590 GKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 590 ~~~~~~~~~l~~h~~~Vt~la~s~-dg~~lA~Gs~dg~V~vwD~~~ 634 (1043)
+.++.++..|+..||.++|-. |-..+-+++.||+|..--.++
T Consensus 299 ---YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 299 ---YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ---cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 234467889999999999954 566788999999876544443
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=167.44 Aligned_cols=256 Identities=14% Similarity=0.223 Sum_probs=187.8
Q ss_pred ceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc-eEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001621 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1043)
Q Consensus 26 ~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~-~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vW 103 (1043)
.+...||+|...-+.++|+|+|..|.+++.||.|++|+.... +.--.+. +...|.+++-.. .+|++++.+++|.++
T Consensus 4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRY 81 (933)
T ss_pred ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEe
Confidence 355678999999999999999999999999999999986544 1111111 345666665544 579999999999999
Q ss_pred ECCCCceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEE
Q 001621 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1043)
Q Consensus 104 dl~t~~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl 182 (1043)
.+.+++.-.-+ ++.-++++++|+-+|.+++.|++|-.|++.+.+....+.. .++|..+|.+|
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-----------------lrgh~apVl~l 144 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-----------------LRGHDAPVLQL 144 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-----------------ecccCCceeee
Confidence 99887644323 3456789999999999999999999999988765432221 24688999999
Q ss_pred EecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC
Q 001621 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1043)
Q Consensus 183 ~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g 262 (1043)
.|+|. +++|+++.-||.|.+||+.++.+...+..-... +.......++.++|+ |+|
T Consensus 145 ~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~---------------------n~~~~s~i~~~~aW~-Pk~ 200 (933)
T KOG1274|consen 145 SYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD---------------------NEFILSRICTRLAWH-PKG 200 (933)
T ss_pred eEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCcc---------------------ccccccceeeeeeec-CCC
Confidence 99996 888999999999999999998887666431000 000014556779997 999
Q ss_pred CEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcce
Q 001621 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1043)
Q Consensus 263 ~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ 342 (1043)
..++....|++|++++..+....... +.......+..+.| +|. |..+++++-+ +.
T Consensus 201 g~la~~~~d~~Vkvy~r~~we~~f~L-------------r~~~~ss~~~~~~w-------sPn-G~YiAAs~~~----g~ 255 (933)
T KOG1274|consen 201 GTLAVPPVDNTVKVYSRKGWELQFKL-------------RDKLSSSKFSDLQW-------SPN-GKYIAASTLD----GQ 255 (933)
T ss_pred CeEEeeccCCeEEEEccCCceeheee-------------cccccccceEEEEE-------cCC-CcEEeeeccC----Cc
Confidence 99999999999999999876543321 11112223566677 453 5666666654 57
Q ss_pred EEEEEcC
Q 001621 343 LTVLSLE 349 (1043)
Q Consensus 343 ltv~~l~ 349 (1043)
+.||+.+
T Consensus 256 I~vWnv~ 262 (933)
T KOG1274|consen 256 ILVWNVD 262 (933)
T ss_pred EEEEecc
Confidence 8898765
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.7e-15 Score=152.48 Aligned_cols=250 Identities=20% Similarity=0.249 Sum_probs=176.6
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC-c--eEEEecC-CCCCeEEEEEec--CCCEEEEEECCCcEEEEEC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-I--EGLLISP-SQLPYKNLEFLQ--NQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~-~--~~~~~~~-~~~~V~~l~Fs~--d~~~Lvs~s~d~~I~vWdl 105 (1043)
.+|...|..+..|--|+.||+++.||+||||...+ . ..+.++. |..||..++|.. -|..|++++-|+.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 35666677777888999999999999999998643 3 3334443 678999999986 6789999999999999999
Q ss_pred CCCceeE--Eee-cCCCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 106 ESRSLAC--CLK-WESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 106 ~t~~~l~--~~~-~~~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
+.++-.. ... +.+.|+++++.|. |-.|+.|++||.|+|+.++.+..--. -+| ...|.-.|.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~ki-----------~~aH~~Gvn 153 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---SKI-----------VFAHEIGVN 153 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---hhh-----------hhccccccc
Confidence 9885433 333 3478999999987 66899999999999999988632111 011 124666789
Q ss_pred EEEecCCCC-C-----------CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCC
Q 001621 181 GVLPHPNSS-G-----------NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1043)
Q Consensus 181 sl~~sp~d~-g-----------~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 248 (1043)
+++|.|... | ++|++|+-|..|+||+...+.-+.. . .| ..|
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~---~l----------------------~~H 206 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--R---TL----------------------EGH 206 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--h---hh----------------------hhc
Confidence 999988521 2 5699999999999999988742211 0 01 114
Q ss_pred CCCeEEEEEecCCC----CEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCC
Q 001621 249 EKEISALCWASSSG----SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSN 324 (1043)
Q Consensus 249 ~~~V~sl~w~sp~g----~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~ 324 (1043)
...|..++|. |.- .+|++++.||++.||.......... ..+ +. .-..++..+.|+.
T Consensus 207 ~dwVRDVAwa-P~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk------~tl----l~--~f~~~~w~vSWS~------- 266 (299)
T KOG1332|consen 207 KDWVRDVAWA-PSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK------KTL----LE--EFPDVVWRVSWSL------- 266 (299)
T ss_pred chhhhhhhhc-cccCCCceeeEEecCCCcEEEEEecCccCccc------ccc----cc--cCCcceEEEEEec-------
Confidence 7889999996 874 5799999999999998762211110 000 00 1223577788854
Q ss_pred CCceEEEecCCCCCCcceEEEEE
Q 001621 325 IDGRLFVYGGDEIGSEEVLTVLS 347 (1043)
Q Consensus 325 ~~~~llv~gg~~~~~~~~ltv~~ 347 (1043)
.+.-|-|+||+ +.+++|.
T Consensus 267 sGn~LaVs~Gd-----Nkvtlwk 284 (299)
T KOG1332|consen 267 SGNILAVSGGD-----NKVTLWK 284 (299)
T ss_pred cccEEEEecCC-----cEEEEEE
Confidence 34455566765 5688874
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=5.6e-15 Score=153.77 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=157.6
Q ss_pred cCCCCeEEEEEcCCCC--EEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001621 33 GIPATASILAFDHIQR--LLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~--lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~ 109 (1043)
-|.+.|+||.|++.-+ .|.+|+.||.|.+|+....+.+..+ .|...|+.|+..|.++.-++++.|+.+++|||-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 3678899999999775 8889999999999999988777554 356679999999999999999999999999999999
Q ss_pred eeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
.-........-+.+.|+|.|++++++..++ |-+|.++.. .+. +.+ .....+.++.|--
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A--~v~------------~~i----~~~~r~l~~~~l~--- 218 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNA--SVF------------REI----ENPKRILCATFLD--- 218 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccH--hHh------------hhh----hccccceeeeecC---
Confidence 887777776677799999999999999887 667766541 111 000 0113456666543
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEE-EecCCCCEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC-WASSSGSILAVG 268 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~-w~sp~g~~l~tg 268 (1043)
+..|++|.+|+.|.+||..+..+.+.+.. |+..|-++. +..|++.+|+|+
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-----------------------------H~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLA-----------------------------HENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeec-----------------------------chhheeeeEEEecCCceEEEEe
Confidence 55699999999999999988777665532 367777776 334778999999
Q ss_pred EcCCcEEEEcCCCC
Q 001621 269 YIDGDILLWNTSTT 282 (1043)
Q Consensus 269 ~~DG~I~iWd~~tg 282 (1043)
++||.|++||+...
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 99999999999654
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=5.7e-15 Score=161.03 Aligned_cols=265 Identities=14% Similarity=0.186 Sum_probs=183.7
Q ss_pred cceeeecccCCCCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCceE------------EEecCCCCCeEEEEEec-CCCE
Q 001621 25 NLRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEG------------LLISPSQLPYKNLEFLQ-NQGF 90 (1043)
Q Consensus 25 ~~~~~~~~G~~~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~~------------~~~~~~~~~V~~l~Fs~-d~~~ 90 (1043)
.+++...+-|++.|+.+.|-|.. .++|+++..|.|+|||.....- .+.. |+..-..|+|++ ..++
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGT 192 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-eccccccccccccccee
Confidence 56666778899999999999964 6899999999999999532110 1222 222345688887 3478
Q ss_pred EEEEECCCcEEEEECCCCce-------eEEeecC-CCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCeEeeeceeec
Q 001621 91 LISITNDNEIQVWSLESRSL-------ACCLKWE-SNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~-------l~~~~~~-~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~ 161 (1043)
|++++.|++|++||+..... ...+..+ ..|..++|.+-.. .+++.++|+.+.+|+......+..
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~------- 265 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS------- 265 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------
Confidence 99999999999999976432 2333334 6899999998654 566778889898988654111111
Q ss_pred ccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCccc
Q 001621 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1043)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (1043)
....+|..+|.|++|+|.+ +..||+|+.|++|.|||++.-+ .+..+.+
T Consensus 266 --------~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---------------------- 314 (422)
T KOG0264|consen 266 --------HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEG---------------------- 314 (422)
T ss_pred --------ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccC----------------------
Confidence 0124678999999999985 5568889999999999998743 3333322
Q ss_pred CccCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCC
Q 001621 241 GISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNK 319 (1043)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~ 319 (1043)
|...|.++.|+ |.. ..|++++.|+.+.+||+..-...+........|. .+.+-.+.|...|..+.|
T Consensus 315 -------H~dev~~V~WS-Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp-EllF~HgGH~~kV~DfsW---- 381 (422)
T KOG0264|consen 315 -------HEDEVFQVEWS-PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP-ELLFIHGGHTAKVSDFSW---- 381 (422)
T ss_pred -------CCcceEEEEeC-CCCCceeEecccCCcEEEEeccccccccChhhhccCCc-ceeEEecCcccccccccC----
Confidence 47889999997 764 6788999999999999976443322111111122 222333457778888888
Q ss_pred CCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001621 320 ESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1043)
Q Consensus 320 ~~~~~~~~~llv~gg~~~~~~~~ltv~~l 348 (1043)
+|....++++..++ +.|.||..
T Consensus 382 ---np~ePW~I~SvaeD----N~LqIW~~ 403 (422)
T KOG0264|consen 382 ---NPNEPWTIASVAED----NILQIWQM 403 (422)
T ss_pred ---CCCCCeEEEEecCC----ceEEEeec
Confidence 44455677776665 67899864
No 134
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.1e-15 Score=148.75 Aligned_cols=211 Identities=12% Similarity=0.158 Sum_probs=163.9
Q ss_pred ceeeecccCCCCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCce-EEEec-CCCCCeEEEEEec-CCCEEEEEECCCcEE
Q 001621 26 LRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE-GLLIS-PSQLPYKNLEFLQ-NQGFLISITNDNEIQ 101 (1043)
Q Consensus 26 ~~~~~~~G~~~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~-~~~~~-~~~~~V~~l~Fs~-d~~~Lvs~s~d~~I~ 101 (1043)
+++..+|-....+..+++++.. +.+++++.||++++||....+ ++..+ +|+..|.++.|.+ ++..+++.+.|++|+
T Consensus 51 i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 51 IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 4566777788889999999975 688899999999999954322 22222 3567899999987 445677779999999
Q ss_pred EEECCCCceeEEeecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCe
Q 001621 102 VWSLESRSLACCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1043)
Q Consensus 102 vWdl~t~~~l~~~~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1043)
+|+-..++-+.++..+ .-|....|+|. .+.++..+.||++++|+++.....+. |+ .|...|
T Consensus 131 LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-----i~------------ah~~Ei 193 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-----IE------------AHNSEI 193 (311)
T ss_pred eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-----EE------------ecccee
Confidence 9999999999999876 67999999997 56788899999999999887533222 22 355789
Q ss_pred EEEEecCCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 180 ~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
.++.|+.-+ .+.|++|+.|+.|+.||++.-+. +..+.+ |.-.|..+.|+
T Consensus 194 l~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-----------------------------h~~AVRkvk~S 243 (311)
T KOG0277|consen 194 LCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNG-----------------------------HGLAVRKVKFS 243 (311)
T ss_pred EeecccccC-CcEEEecCCCceEEEEehhhccccceeecC-----------------------------CceEEEEEecC
Confidence 999999874 45689999999999999987542 222211 35668999996
Q ss_pred cCC-CCEEEEEEcCCcEEEEcCCCCCc
Q 001621 259 SSS-GSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 259 sp~-g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
|- ...|++++-|=+++|||...+..
T Consensus 244 -ph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 244 -PHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred -cchhhHhhhccccceEEecccccchh
Confidence 65 46799999999999999976553
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.2e-14 Score=165.24 Aligned_cols=159 Identities=16% Similarity=0.276 Sum_probs=124.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCC
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~-~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~ 151 (1043)
-|....+.|+|.++|.+|++++.|+.|++|+...- ..-.++. ....|.+++. .+.++++|+++++|.++.++....
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 35567889999999999999999999999997765 3333343 3455666665 445899999999999988776432
Q ss_pred eEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC
Q 001621 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1043)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1043)
.-..++|. -|+..++++- +|+++++|++|-.|++-++.+.....++.+
T Consensus 89 ~~iL~Rft-----------------lp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrg------------- 136 (933)
T KOG1274|consen 89 DTILARFT-----------------LPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRG------------- 136 (933)
T ss_pred cceeeeee-----------------ccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecc-------------
Confidence 21111232 3578888887 488899999999999999988776666544
Q ss_pred CCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
|+.+|.++.|+ |++.+||+.+-||.|++||+.++.
T Consensus 137 ----------------h~apVl~l~~~-p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 137 ----------------HDAPVLQLSYD-PKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred ----------------cCCceeeeeEc-CCCCEEEEEecCceEEEEEcccch
Confidence 38899999997 999999999999999999997654
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.65 E-value=1.5e-14 Score=164.08 Aligned_cols=270 Identities=19% Similarity=0.221 Sum_probs=196.7
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC---CCCCeEE-EEEec-CCCEEEEEECCCcEEEEECC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP---SQLPYKN-LEFLQ-NQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~---~~~~V~~-l~Fs~-d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
.||...|..|++.+. ..+++|+.||+++||...+.+.+-.+. +.+-|.. +++.+ ++++|++++.|..|.+|.+.
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 589999999887654 478899999999999987766553222 2333333 55553 66789999999999999999
Q ss_pred CCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 107 SRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 107 t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+..++.++..| +.|+|++...++. |++|+=|.+++||.... +. +. -.+|..+|+++..-
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~---~~------------l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LV---YS------------LQGHTASVWAVASL 149 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hh---cc------------cCCcchheeeeeec
Confidence 99999999866 8999999988887 89999999999997543 11 22 13688999999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
|. + .+++|+.|.+|++|.- ++.++.+.+ |..-|..++.. + +..+
T Consensus 150 ~e--~-~~vTgsaDKtIklWk~--~~~l~tf~g-----------------------------HtD~VRgL~vl-~-~~~f 193 (745)
T KOG0301|consen 150 PE--N-TYVTGSADKTIKLWKG--GTLLKTFSG-----------------------------HTDCVRGLAVL-D-DSHF 193 (745)
T ss_pred CC--C-cEEeccCcceeeeccC--Cchhhhhcc-----------------------------chhheeeeEEe-c-CCCe
Confidence 95 5 4999999999999985 666666644 37789999987 4 5578
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
++++.||.|++|++ +|+.+... ..|..-|.++.. .-+.+++|+.|.| +.+++
T Consensus 194 lScsNDg~Ir~w~~-~ge~l~~~---------------~ghtn~vYsis~--------~~~~~~Ivs~gED----rtlri 245 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-DGEVLLEM---------------HGHTNFVYSISM--------ALSDGLIVSTGED----RTLRI 245 (745)
T ss_pred EeecCCceEEEEec-cCceeeee---------------eccceEEEEEEe--------cCCCCeEEEecCC----ceEEE
Confidence 89999999999999 55544321 113334555521 1245678888877 68899
Q ss_pred EEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEee
Q 001621 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYD 404 (1043)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d 404 (1043)
|.-+. |...+.+ +...+.+...++... +++.+++|.+++|.
T Consensus 246 W~~~e--------~~q~I~l-PttsiWsa~~L~NgD---------Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 246 WKKDE--------CVQVITL-PTTSIWSAKVLLNGD---------IVVGGSDGRVRVFT 286 (745)
T ss_pred eecCc--------eEEEEec-CccceEEEEEeeCCC---------EEEeccCceEEEEE
Confidence 87541 2222222 233566666555432 78889999999875
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.6e-14 Score=146.13 Aligned_cols=252 Identities=18% Similarity=0.217 Sum_probs=168.7
Q ss_pred eecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceE------------------EEe------------------
Q 001621 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG------------------LLI------------------ 72 (1043)
Q Consensus 29 ~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~------------------~~~------------------ 72 (1043)
...-||.+.|++++|+.+|+.||+++.|++|+||+.+..+. .+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 34469999999999999999999999999999998653210 000
Q ss_pred ----------------------cC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeC
Q 001621 73 ----------------------SP--SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVIS 127 (1043)
Q Consensus 73 ----------------------~~--~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp 127 (1043)
++ ++..|..+-...++.+|.+++.|.+|.+||+. |+.+.++... ..-+..+++|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 00 11234445556677899999999999999998 9999988654 5677889999
Q ss_pred CCCEEEEEeCCCcEEEEEEe-CCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEE
Q 001621 128 GSHFMYIGDENGLMSVIKYD-ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1043)
Q Consensus 128 ~~~~l~vG~~dG~v~v~~~d-~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd 206 (1043)
+|+++++..-.-.|+||..= ..++.+.. .+......+|.+.|.+++|+|+ .+++++++.||.++|||
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqe----------v~rvf~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQE----------VKRVFSLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWD 306 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhh----------hhhhheeccchhheeeeeeCCC--cceeEEEecCCcEEEee
Confidence 99999999888889999642 11122110 0112234678999999999995 78899999999999999
Q ss_pred ccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 207 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
..-.- ..+..+..++.- +...-+. ......+.. ||+|..|+..+ ..+|+++..++|+...
T Consensus 307 tdVrY---~~~qDpk~Lk~g-----~~pl~aa----------g~~p~RL~l-sP~g~~lA~s~-gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 307 TDVRY---EAGQDPKILKEG-----SAPLHAA----------GSEPVRLEL-SPSGDSLAVSF-GSDLKVFASEDGKDYP 366 (420)
T ss_pred ccceE---ecCCCchHhhcC-----Ccchhhc----------CCCceEEEe-CCCCcEEEeec-CCceEEEEcccCccch
Confidence 75321 111111111100 0000011 222336777 49999887765 4579999998876433
Q ss_pred cccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCC
Q 001621 287 GQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1043)
Q Consensus 287 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~ 335 (1043)
... .-+...|..+.|. + +++.+++.|+
T Consensus 367 ~~e--------------~~h~~~Is~is~~-------~-~g~~~atcGd 393 (420)
T KOG2096|consen 367 ELE--------------DIHSTTISSISYS-------S-DGKYIATCGD 393 (420)
T ss_pred hHH--------------HhhcCceeeEEec-------C-CCcEEeeecc
Confidence 211 0134567788773 3 4566777765
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.64 E-value=5.3e-15 Score=161.36 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=113.5
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCc
Q 001621 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1043)
Q Consensus 491 ~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~ 570 (1043)
++++|.-|-||+-|.+||.||...+.--..+. -...|.++.+||++.+||+|.+.+.|.|........
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhd------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhh------------hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 44556677788889999999998876111111 124689999999999999999999998877654321
Q ss_pred ccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCC
Q 001621 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 650 (1043)
Q Consensus 571 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~ 650 (1043)
..+..|.+-|.+|.|++.|++.++-+.|..+..|...-+.-+|+.. ..++
T Consensus 627 --------------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~Ss 676 (705)
T KOG0639|consen 627 --------------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSS 676 (705)
T ss_pred --------------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCc
Confidence 2356799999999999999999999999999999998888887743 3578
Q ss_pred eEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcC
Q 001621 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 651 V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~ 699 (1043)
|.+...|. +..|+++|+-|.+-.+|.+
T Consensus 677 VlsCDIS~----------------------ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 677 VLSCDISF----------------------DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeeecc----------------------CceEEEecCCCcceEEEEE
Confidence 99988863 3467999999877777653
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.5e-14 Score=156.90 Aligned_cols=244 Identities=15% Similarity=0.234 Sum_probs=171.2
Q ss_pred CCCCeEEEEEc-------CCCCEEEEEEcCCcEEEEcCC---CceEEEecC-------------------CCCCeEEEEE
Q 001621 34 IPATASILAFD-------HIQRLLAIATLDGRIKVIGGD---GIEGLLISP-------------------SQLPYKNLEF 84 (1043)
Q Consensus 34 ~~~~v~~lafs-------p~g~lLAvgt~dG~I~v~~~~---~~~~~~~~~-------------------~~~~V~~l~F 84 (1043)
+|....|+++- ..|+++|+||.|-.|.|||.+ .+.+.+++. |+..|.+|.|
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 35556677662 246899999999999999964 333333332 3345667777
Q ss_pred ecC-CCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeec
Q 001621 85 LQN-QGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1043)
Q Consensus 85 s~d-~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~ 161 (1043)
..+ ...|+|++.|.+|++||+.++++..++..+ ++|.++.|.|. ..+|++|+.||+|.+.+..... ... ..|++
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-~s~-~~wk~- 328 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-NSG-KEWKF- 328 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-ccC-ceEEe-
Confidence 654 357899999999999999999999999854 89999999986 5689999999999887764311 100 01221
Q ss_pred ccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC-eEEEEeCCcccccccccccCCCCCCCCccc
Q 001621 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1043)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (1043)
.+.|..++|+|.... .++++..||+|+-+|++.. +++..+. +
T Consensus 329 --------------~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~---------A------------- 371 (463)
T KOG0270|consen 329 --------------DGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLK---------A------------- 371 (463)
T ss_pred --------------ccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEE---------e-------------
Confidence 367899999997544 4888999999999999875 6665542 2
Q ss_pred CccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCC
Q 001621 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKE 320 (1043)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~ 320 (1043)
|..+|++++++...-..++|++.|+.+++|++........ ..+...+..+ +|.
T Consensus 372 -------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v----------------~~~~~~~~rl--~c~-- 424 (463)
T KOG0270|consen 372 -------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV----------------KEHSFKLGRL--HCF-- 424 (463)
T ss_pred -------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc----------------ccccccccce--eec--
Confidence 4789999999755567899999999999999965432110 0011111112 221
Q ss_pred CCCCCCceEEEecCCCCCCcceEEEEEc
Q 001621 321 SRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1043)
Q Consensus 321 ~~~~~~~~llv~gg~~~~~~~~ltv~~l 348 (1043)
..+|+...+|+.||.. ..++||++
T Consensus 425 ~~~~~~a~~la~GG~k----~~~~vwd~ 448 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEK----AVLRVWDI 448 (463)
T ss_pred ccCCCcceEEEecCcc----ceEEEeec
Confidence 1267777888999864 46788764
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.6e-14 Score=146.64 Aligned_cols=202 Identities=14% Similarity=0.150 Sum_probs=152.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
++. ..|+.|++.|.+||+|..||+|.|||......-..+ .|-.||.+++|++||+.|++++.|+.|.+||+..|.+++
T Consensus 23 ~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 23 NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 344 899999999999999999999999998665433322 356799999999999999999999999999999999999
Q ss_pred EeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCC-CCCeEEEEecCCCCC
Q 001621 113 CLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSG 190 (1043)
Q Consensus 113 ~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~sl~~sp~d~g 190 (1043)
.+.+.++|+.+.+.|..+..++++- +-.-.|..++. .+.. .++.+ +.+. .....+..|.+. |
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~----~Lp~d--------~d~dln~sas~~~fdr~--g 165 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHS----VLPKD--------DDGDLNSSASHGVFDRR--G 165 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--Ccee----eccCC--------CccccccccccccccCC--C
Confidence 9999999999999998766555432 22223344432 1111 11111 0111 111222356774 8
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
+++++|...|.+.++|..+-+++..+.- . ....|.++-++ ..|+.|+.-+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~ri---------t-------------------s~~~IK~I~~s-~~g~~liiNts 216 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRI---------T-------------------SVQAIKQIIVS-RKGRFLIINTS 216 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeee---------c-------------------hheeeeEEEEe-ccCcEEEEecC
Confidence 9999999999999999999888766532 0 03567888886 89999999999
Q ss_pred CCcEEEEcCCC
Q 001621 271 DGDILLWNTST 281 (1043)
Q Consensus 271 DG~I~iWd~~t 281 (1043)
|..||.+++..
T Consensus 217 DRvIR~ye~~d 227 (405)
T KOG1273|consen 217 DRVIRTYEISD 227 (405)
T ss_pred CceEEEEehhh
Confidence 99999999864
No 141
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.61 E-value=1.1e-14 Score=158.95 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=154.6
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEEcCCcEEEEcCCCceE--------EEecCCCCCeEEEEEec-CCCEEEEEECCCcEEE
Q 001621 33 GIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEG--------LLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQV 102 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~-lLAvgt~dG~I~v~~~~~~~~--------~~~~~~~~~V~~l~Fs~-d~~~Lvs~s~d~~I~v 102 (1043)
||...-..|+|++... .|++|+.|++|.+||+..... .....|...|..++|.+ +...+.+++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 5666667799999764 789999999999999754321 12234678999999998 4456788999999999
Q ss_pred EECCC--CceeEEeec-CCCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 103 WSLES--RSLACCLKW-ESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 103 Wdl~t--~~~l~~~~~-~~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
||+++ .++.+.... .+.|+|++|+|-+. .||+|+.|++|.+|++.. |...++.+ .+|...
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn----L~~~lh~~------------e~H~de 318 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN----LNKPLHTF------------EGHEDE 318 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh----cccCceec------------cCCCcc
Confidence 99995 445555554 48999999999755 578899999999998754 22111222 357889
Q ss_pred eEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
|.+|.|+|..+ +.|++++.|+.+.+||+..-...+... .+..++.+-+...-.|...|....|+
T Consensus 319 v~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~e---------------da~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 319 VFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPE---------------DAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred eEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChh---------------hhccCCcceeEEecCcccccccccCC
Confidence 99999999854 468999999999999997532211100 00111111122223367889999997
Q ss_pred cCCCC-EEEEEEcCCcEEEEcCCC
Q 001621 259 SSSGS-ILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 259 sp~g~-~l~tg~~DG~I~iWd~~t 281 (1043)
|+.. .|++..+|+.++||....
T Consensus 383 -p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 -PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -CCCCeEEEEecCCceEEEeeccc
Confidence 8765 577889999999999863
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.61 E-value=9.4e-14 Score=156.32 Aligned_cols=228 Identities=16% Similarity=0.211 Sum_probs=150.0
Q ss_pred ccCCCCeEEEEEcC---CCCEEEEEEcCCcEEEEcCCCceEE-------EecCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001621 32 YGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIEGL-------LISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 32 ~G~~~~v~~lafsp---~g~lLAvgt~dG~I~v~~~~~~~~~-------~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
.|.+-...+..|++ .-.+||++..||-|.+||....... ...-|...|-.+.|.|....||+++.|.+++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 34444555567755 3469999999999999997543322 2233678899999999888999999999999
Q ss_pred EEECCCCceeEE--eec-CCCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCe-Eee---e---ceee---ccccccc
Q 001621 102 VWSLESRSLACC--LKW-ESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGK-LFQ---L---PYNI---SADALSE 167 (1043)
Q Consensus 102 vWdl~t~~~l~~--~~~-~~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~-l~~---~---~~~i---~~~~~~~ 167 (1043)
+||+++.+++.. +.. .+.|.+++|.|... .+++|+.||.|.||++....-. +.. + .++- +..-+.+
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988765 444 48899999999765 5779999999999998653200 000 0 0110 1000111
Q ss_pred ccCCCCCC----CCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCc
Q 001621 168 KAGFPLLS----HQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1043)
Q Consensus 168 ~~~~~~~~----~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 242 (1043)
...-...+ .+.|+.+.|.- +. .|++++. |+.|+|||++........+. .+. +.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkD--e~-tlaSaga~D~~iKVWDLRk~~~~~r~ep-------------~~~-----~~~ 264 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKD--ES-TLASAGAADSTIKVWDLRKNYTAYRQEP-------------RGS-----DKY 264 (720)
T ss_pred cccccccccCceeeeeEEEEEec--cc-eeeeccCCCcceEEEeecccccccccCC-------------Ccc-----cCc
Confidence 11111122 33466677763 34 5888777 99999999998765433211 000 001
Q ss_pred cCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 243 SEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 243 ~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
.....+.-.+++++-. ..|.+|.....|+.|.+||+.+
T Consensus 265 ~t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred cCcccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccc
Confidence 1111234567888875 6788888888899999999854
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.4e-15 Score=171.02 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=161.7
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
..+||.+.|-+|.|++...+||.|+.+|+|++||......+..+. +...+..+.|+|-+.|.++++.|..+++||....
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 358999999999999999999999999999999998766555443 5678999999999999999999999999999988
Q ss_pred ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
-|.+.+..+ ..|.++.|+|+|.|++.|++|.+++||+... +++.. ....|...|.++.|||.
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~---------------ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSK---------------EFKSHEGKVQSLEFHPL 207 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--ccccc---------------ccccccccccccccCch
Confidence 899998865 6788999999999999999999999998754 33331 11346788999999996
Q ss_pred CCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
.-.+..|+.|++|++||+++-+.+...+. ....|.++.|+ |+|..+++
T Consensus 208 --e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----------------------------~~~~v~~~~fn-~~~~~~~~ 255 (825)
T KOG0267|consen 208 --EVLLAPGSSDRTVRFWDLETFEVISSGKP-----------------------------ETDGVRSLAFN-PDGKIVLS 255 (825)
T ss_pred --hhhhccCCCCceeeeeccceeEEeeccCC-----------------------------ccCCceeeeec-CCceeeec
Confidence 33467799999999999998777654322 14568999997 99999999
Q ss_pred EEcCCc
Q 001621 268 GYIDGD 273 (1043)
Q Consensus 268 g~~DG~ 273 (1043)
|..+.-
T Consensus 256 G~q~sl 261 (825)
T KOG0267|consen 256 GEQISL 261 (825)
T ss_pred Cchhhh
Confidence 877543
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=7e-13 Score=148.94 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=129.9
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeee
Q 001621 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1043)
Q Consensus 78 ~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~ 156 (1043)
.|..++|-|||..|+.+ .++.+.++|.+.|.++.+++.| ..|.|++++.+|+.+++|+.|..|-+|.-..+ +.+.
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceee--
Confidence 68899999999887766 5778999999999999999877 78999999999999999999999988864332 2222
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCC
Q 001621 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1043)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1043)
| .|...|.|+.|+|. .+.|++++-+ ..-+|+..+..+....
T Consensus 90 -Y---------------SH~D~IQCMsFNP~--~h~LasCsLs-dFglWS~~qK~V~K~k-------------------- 130 (1081)
T KOG1538|consen 90 -Y---------------SHNDAIQCMSFNPI--THQLASCSLS-DFGLWSPEQKSVSKHK-------------------- 130 (1081)
T ss_pred -e---------------ccCCeeeEeecCch--HHHhhhcchh-hccccChhhhhHHhhh--------------------
Confidence 1 36778999999995 5556666554 3478987765443221
Q ss_pred CcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEee
Q 001621 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1043)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~ 316 (1043)
....|.+.+|. .||++++-|..||+|.+=+....... +++ +++....||.++.|+
T Consensus 131 -----------ss~R~~~CsWt-nDGqylalG~~nGTIsiRNk~gEek~------------~I~-Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 131 -----------SSSRIICCSWT-NDGQYLALGMFNGTISIRNKNGEEKV------------KIE-RPGGSNSPIWSICWN 185 (1081)
T ss_pred -----------hheeEEEeeec-CCCcEEEEeccCceEEeecCCCCcce------------EEe-CCCCCCCCceEEEec
Confidence 14668899998 99999999999999998764322111 111 244566789999886
Q ss_pred c
Q 001621 317 T 317 (1043)
Q Consensus 317 ~ 317 (1043)
.
T Consensus 186 p 186 (1081)
T KOG1538|consen 186 P 186 (1081)
T ss_pred C
Confidence 4
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.8e-15 Score=170.46 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=169.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
|...+.|+..-..++.++.|..|-.+-+|.....-.+..+ .|..+|.+|.|.++...|++++.+|+|+||||+.++.++
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr 106 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR 106 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence 5667888888677899999999999999987554444442 357899999999998889999999999999999999999
Q ss_pred EeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 113 CLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 113 ~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
++..+ .+++.+.|+|-+.|.+.|+.|+.+.+|+..-.++... ..+|...|..+.|+| +|+
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-----------------~~s~~~vv~~l~lsP--~Gr 167 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-----------------YKSHTRVVDVLRLSP--DGR 167 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhhccCceee-----------------ecCCcceeEEEeecC--CCc
Confidence 99776 7899999999999999999999999997653222111 123667789999999 488
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC
Q 001621 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D 271 (1043)
+++.+++|.++.|||+..|+....|.. |...+.++.|+ |..-.+++|+.|
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef~~-----------------------------~e~~v~sle~h-p~e~Lla~Gs~d 217 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEFKS-----------------------------HEGKVQSLEFH-PLEVLLAPGSSD 217 (825)
T ss_pred eeeccCCcceeeeeccccccccccccc-----------------------------ccccccccccC-chhhhhccCCCC
Confidence 899999999999999999998876643 36778889996 999999999999
Q ss_pred CcEEEEcCCCCCccc
Q 001621 272 GDILLWNTSTTASTK 286 (1043)
Q Consensus 272 G~I~iWd~~tg~~~~ 286 (1043)
++++|||+++-+.+.
T Consensus 218 ~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 218 RTVRFWDLETFEVIS 232 (825)
T ss_pred ceeeeeccceeEEee
Confidence 999999998765543
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.9e-14 Score=146.44 Aligned_cols=210 Identities=18% Similarity=0.154 Sum_probs=146.0
Q ss_pred eEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEE
Q 001621 539 VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1043)
Q Consensus 539 V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~l 618 (1043)
.+|+.|++.|.+||+|..+|.|.||||.+.... .++.+|.-||++|+||+||+.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-------------------------r~lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-------------------------RMLSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-------------------------hhhhccccceeEEEecCCCCEe
Confidence 789999999999999999999999999875321 3468999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCC-----------------ccc-cCCCCCCCCC--CC-
Q 001621 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNT-----------------HSL-AKNPNHSERE--VP- 677 (1043)
Q Consensus 619 A~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~-----------------~~~-~~~p~~~~~~--~~- 677 (1043)
.++|.|-.|.+||+..|.++++..+ .+||....|.+.... .++ ..+|....-. ..
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 9999999999999999999988766 578888777653211 000 0122222111 11
Q ss_pred ----CCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccCCcce
Q 001621 678 ----VNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCC 753 (1043)
Q Consensus 678 ----~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~ 753 (1043)
-+..+.|+++|+..|.+.++|++|-+++.++.+.. . -+.|.
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------------------~-----~~IK~----------- 201 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------------------V-----QAIKQ----------- 201 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------------------h-----eeeeE-----------
Confidence 12336789999999999999999988877762111 0 00111
Q ss_pred eEEeeeecceeEEEEEEEeeCcEEEEeCCChhhhhh-------hcccceeeeeccCCCceeeEec-CCcEEEEcc
Q 001621 754 WASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVME-------SSLMSILRWNFKANMDKTISAD-NGQITLANG 820 (1043)
Q Consensus 754 ~~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l~~~~~-------~~l~~~~~~~~~~~~~~~i~~s-dg~~~l~~g 820 (1043)
+..+.+|..|+.-.+|..||.|++.++....+ ..+..+. +.-.=+.+|+| ||.++....
T Consensus 202 ----I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV----Nk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 202 ----IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV----NKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred ----EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH----hhhhhhheeecCCccEEEecc
Confidence 11245677888899999999999975543311 1111100 11112568999 999876543
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.58 E-value=9.6e-11 Score=134.88 Aligned_cols=202 Identities=20% Similarity=0.359 Sum_probs=148.8
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce-EEEecCC-C-CCeEEEEE-ecCCC-EEEEEEC-CCcEEEE
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPS-Q-LPYKNLEF-LQNQG-FLISITN-DNEIQVW 103 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~-~~~~~~~-~-~~V~~l~F-s~d~~-~Lvs~s~-d~~I~vW 103 (1043)
...++...+.++.|++.+..++.++.|+.|.+|+..... .+..+.. . ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 345788889999999999999999999999999976654 3333322 2 36777777 77766 5555455 8999999
Q ss_pred ECCC-CceeEEeecC-CCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 104 SLES-RSLACCLKWE-SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 104 dl~t-~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
|+.. ......+..+ ..|.++.++|++.+++++.. ++.+++|+.... ... ..+ ..|...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~------------~~~~~~v~ 202 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPL---STL------------AGHTDPVS 202 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceE---Eee------------ccCCCceE
Confidence 9998 6677766655 78999999999999998886 999999987641 111 011 12667899
Q ss_pred EEEecCCCCCC-EEEEEECCCeEEEEEccCCeEEE-EeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 181 GVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 181 sl~~sp~d~g~-~ll~~~~dg~I~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
++.|+|+ +. .++.++.|+.|.+||...+..+. .+.. + ...+ -.+|.
T Consensus 203 ~~~~~~~--~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~-------~----------------------~~~~-~~~~~ 250 (466)
T COG2319 203 SLAFSPD--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSG-------H----------------------SDSV-VSSFS 250 (466)
T ss_pred EEEEcCC--cceEEEEecCCCcEEEEECCCCcEEeeecCC-------C----------------------Ccce-eEeEC
Confidence 9999985 54 34444889999999988666655 3322 1 2222 11675
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCC
Q 001621 259 SSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 259 sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
|++..+++++.|+.+++|+...
T Consensus 251 -~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 251 -PDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred -CCCCEEEEecCCCcEEEeeecC
Confidence 9998999999999999999753
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2e-13 Score=152.53 Aligned_cols=324 Identities=10% Similarity=0.055 Sum_probs=209.8
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCce
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~-~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
-||.+.|.|+..+|.|.+||+|+.||+|+||.+.++.++....-...|++++|+|... .++++..++.+.|-|-.-|..
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 4899999999999999999999999999999999999988777777999999999653 355555555577777655533
Q ss_pred eEEeecCCCEEEEEEeCCCCEEEEE----eCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 111 ACCLKWESNITAFSVISGSHFMYIG----DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 111 l~~~~~~~~Vtav~~sp~~~~l~vG----~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
+...... ..++.+ ..++.+-.|.-...+ ++. +.+.....|..+|..|.||-
T Consensus 477 ~e~~~t~------------ell~~~~~~~~p~~~~~~W~~~~~~-e~~------------~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 477 LEVGPTK------------ELLASAPNESEPDAAVVTWSRASLD-ELE------------KGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred hhhcchh------------hhhhcCCCccCCcccceeechhhhh-hhc------------cceEEEEecCCccceeeeec
Confidence 2221111 111111 112233334322100 000 00001113567899999999
Q ss_pred CCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC
Q 001621 187 NSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg---~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~ 263 (1043)
+ |.+|++...++ .|.|+++...+.+.-|.. ..+.|.++.|+ |...
T Consensus 532 k--GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-----------------------------skG~vq~v~FH-Ps~p 579 (733)
T KOG0650|consen 532 K--GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-----------------------------SKGLVQRVKFH-PSKP 579 (733)
T ss_pred C--CceEEEeccCCCcceEEEEecccccccCchhh-----------------------------cCCceeEEEec-CCCc
Confidence 5 88888876543 677888876654422211 15678889997 8887
Q ss_pred EEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceE
Q 001621 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1043)
Q Consensus 264 ~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~l 343 (1043)
++++++. ..|+++|+....+... + ..|
T Consensus 580 ~lfVaTq-~~vRiYdL~kqelvKk-------------------------L-----------------~tg---------- 606 (733)
T KOG0650|consen 580 YLFVATQ-RSVRIYDLSKQELVKK-------------------------L-----------------LTG---------- 606 (733)
T ss_pred eEEEEec-cceEEEehhHHHHHHH-------------------------H-----------------hcC----------
Confidence 7776654 5677777643211100 0 000
Q ss_pred EEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCC
Q 001621 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1043)
Q Consensus 344 tv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~ 423 (1043)
+
T Consensus 607 -----------------------------------------~-------------------------------------- 607 (733)
T KOG0650|consen 607 -----------------------------------------S-------------------------------------- 607 (733)
T ss_pred -----------------------------------------C--------------------------------------
Confidence 0
Q ss_pred ccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeC
Q 001621 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1043)
Q Consensus 424 ~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~ 503 (1043)
-|.. .+ +.+|.|.-|+.|+.
T Consensus 608 ------------------------------kwiS-----------------------------~m-sihp~GDnli~gs~ 627 (733)
T KOG0650|consen 608 ------------------------------KWIS-----------------------------SM-SIHPNGDNLILGSY 627 (733)
T ss_pred ------------------------------eeee-----------------------------ee-eecCCCCeEEEecC
Confidence 0100 01 35566777888888
Q ss_pred CCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCc
Q 001621 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1043)
Q Consensus 504 DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~ 583 (1043)
|+.+..+|+.-+. .+... +.-|..+|++|+|.+...++|+|+.||+|.||--........
T Consensus 628 d~k~~WfDldlss-kPyk~---------lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q---------- 687 (733)
T KOG0650|consen 628 DKKMCWFDLDLSS-KPYKT---------LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ---------- 687 (733)
T ss_pred CCeeEEEEcccCc-chhHH---------hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc----------
Confidence 9999988887654 11111 235777999999999999999999999999997543322111
Q ss_pred eeeecCCCcceeeEEecCCCCC----EEEEEEcCCCcEEEEEeCCCeEEEE
Q 001621 584 VHALPEGKISLCRAVFSLVNSP----VRALQFTSSGAKLAVGFECGRVAVL 630 (1043)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~h~~~----Vt~la~s~dg~~lA~Gs~dg~V~vw 630 (1043)
.....+...+.+|... |....|+|.--+|.+++.||+|++|
T Consensus 688 ------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 ------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1112233456777654 8999999999999999999999998
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.7e-12 Score=135.12 Aligned_cols=275 Identities=14% Similarity=0.211 Sum_probs=174.4
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce--EEEec---CCCCCeEEEEEec--CCCEEEEEECCCcEEE
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLIS---PSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~--~~~~~---~~~~~V~~l~Fs~--d~~~Lvs~s~d~~I~v 102 (1043)
+..||..=|.|+.||+-|+.+|+++.|++|+|||..... .-++. -|.+.|..+.|.+ -|+.+++++-|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 345677779999999999999999999999999953222 22222 1467899999975 3577888999999999
Q ss_pred EECCCC-------c--eeEEee-cCCCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccC
Q 001621 103 WSLESR-------S--LACCLK-WESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1043)
Q Consensus 103 Wdl~t~-------~--~l~~~~-~~~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1043)
|.-... + ...++. ..+.|+.+.|.|. |-.|++.+.||.+||+.... ...+.. +.+... ++-..-
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d-p~nLs~--W~Lq~E-i~~~~~ 163 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD-PMNLSQ--WTLQHE-IQNVID 163 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC-cccccc--chhhhh-hhhccC
Confidence 986321 1 223333 3478999999987 66889999999999976432 122221 222111 111111
Q ss_pred CCCCCCCCeEEEEecCCCCCC-EEEEEECC-----CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccC
Q 001621 171 FPLLSHQPVVGVLPHPNSSGN-RVLIAYEN-----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1043)
Q Consensus 171 ~~~~~~~~V~sl~~sp~d~g~-~ll~~~~d-----g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 244 (1043)
.|..+..+..||.|+|..... .+++|+.+ +.+.||...++........ +++
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva-------~L~---------------- 220 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA-------ELP---------------- 220 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh-------hcC----------------
Confidence 234467889999999843222 35556554 3678888766531111000 111
Q ss_pred CCCCCCCeEEEEEecCCC----CEEEEEEcCCcEEEEcCCCCCccccccC-C-----CCCcceeeecccccCCcceEEEE
Q 001621 245 HQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTTASTKGQQT-G-----SRNNVVKLELSSAERRLPVIVLH 314 (1043)
Q Consensus 245 ~~~~~~~V~sl~w~sp~g----~~l~tg~~DG~I~iWd~~tg~~~~~~~~-~-----~~~~i~~l~~~~~~~~~~i~~l~ 314 (1043)
.+..+|++++|+ |+- ..||+++.|| |+||.+........... . ...++.++.. ...|+.+|..+.
T Consensus 221 --d~~dpI~di~wA-Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 221 --DHTDPIRDISWA-PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-LDDHNGEVWRVR 295 (361)
T ss_pred --CCCCcceeeeec-cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-ccCCCCceEEEE
Confidence 147899999997 873 3699999999 99999975432111110 0 0122333221 234566888888
Q ss_pred eecCCCCCCCCCceEEEecCCCCCCcceEEEEEc
Q 001621 315 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1043)
Q Consensus 315 w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l 348 (1043)
|.- -|.+|.+.|+| .++++|..
T Consensus 296 wNm--------tGtiLsStGdD----G~VRLWka 317 (361)
T KOG2445|consen 296 WNM--------TGTILSSTGDD----GCVRLWKA 317 (361)
T ss_pred Eee--------eeeEEeecCCC----ceeeehhh
Confidence 853 35678888876 57888653
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.54 E-value=3e-10 Score=130.69 Aligned_cols=337 Identities=19% Similarity=0.336 Sum_probs=226.6
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc-eeEEeec-CC-CEEEEEE-eCCCC-EEEEEeC-CCcEEEEEEe
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKW-ES-NITAFSV-ISGSH-FMYIGDE-NGLMSVIKYD 147 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~-~l~~~~~-~~-~Vtav~~-sp~~~-~l~vG~~-dG~v~v~~~d 147 (1043)
.+...+..+.|.+++..++..+.|+.+.+|+...+. .+..+.. +. .+..+.+ .+++. +++.... ++.+++|++.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 456789999999998889999999999999999887 6666655 32 6777777 78887 4444344 8899999876
Q ss_pred CCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCeEEEEeCCcccccccc
Q 001621 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1043)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~~~~~~~~~~~~~~~~ 226 (1043)
....... .+ ..|...|..+.|+|. +..++++.. ++.+.+|++..+..+..+..
T Consensus 143 ~~~~~~~----~~------------~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 196 (466)
T COG2319 143 TPGKLIR----TL------------EGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAG-------- 196 (466)
T ss_pred CCCeEEE----EE------------ecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeecc--------
Confidence 5111111 11 235677889999995 656777765 99999999998666555422
Q ss_pred cccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC-EEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeeccccc
Q 001621 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1043)
Q Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~-~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~ 305 (1043)
|...|.++.|. |++. .+++++.|+.|++||...+.....
T Consensus 197 ---------------------~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------ 236 (466)
T COG2319 197 ---------------------HTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------ 236 (466)
T ss_pred ---------------------CCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEee------------------
Confidence 36789999997 9998 566668999999996531110000
Q ss_pred CCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCC
Q 001621 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1043)
Q Consensus 306 ~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~ 385 (1043)
.+
T Consensus 237 ------~~------------------------------------------------------------------------ 238 (466)
T COG2319 237 ------TL------------------------------------------------------------------------ 238 (466)
T ss_pred ------ec------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccC
Q 001621 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1043)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~ 465 (1043)
.. |.... ..
T Consensus 239 ------------------~~---------------------------~~~~~-~~------------------------- 247 (466)
T COG2319 239 ------------------SG---------------------------HSDSV-VS------------------------- 247 (466)
T ss_pred ------------------CC---------------------------CCcce-eE-------------------------
Confidence 00 00000 00
Q ss_pred CCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEe
Q 001621 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1043)
Q Consensus 466 ~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fs 545 (1043)
.+++++..+++++.|+.+++||...... .+..+ .+|...|.++.|+
T Consensus 248 ------------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~---------~~~~~~v~~~~~~ 293 (466)
T COG2319 248 ------------------------SFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTL---------SGHSSSVLSVAFS 293 (466)
T ss_pred ------------------------eECCCCCEEEEecCCCcEEEeeecCCCc-EEEEE---------ecCCccEEEEEEC
Confidence 1223335677899999999999987652 11111 3667899999999
Q ss_pred cCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEE-eCC
Q 001621 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG-FEC 624 (1043)
Q Consensus 546 pd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~G-s~d 624 (1043)
|++..+++++.|+.+++|+......... .....|...|..+.|++++..++++ ..|
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSS-----------------------LTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEE-----------------------eeecccCCceEEEEECCCCCEEEEeecCC
Confidence 9999998899999999997765432100 0023677789999994443566666 688
Q ss_pred CeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCe
Q 001621 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1043)
Q Consensus 625 g~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~ 704 (1043)
+.+.+|++........... ...+..+.|.. . . .+.-.+..++.+.+|+......
T Consensus 351 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~-~--------------------~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 351 GTIRLWDLRTGKPLKTLEG----HSNVLSVSFSP-D-G--------------------RVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CcEEeeecCCCceeEEecC----CceEEEEEECC-C-C--------------------CEEEEecCCCceEEEecccCee
Confidence 9999999988763222211 12277777753 2 1 1122478899999999888776
Q ss_pred eecC
Q 001621 705 ISSS 708 (1043)
Q Consensus 705 l~~~ 708 (1043)
....
T Consensus 405 ~~~~ 408 (466)
T COG2319 405 LRNL 408 (466)
T ss_pred eeec
Confidence 5443
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.8e-13 Score=139.34 Aligned_cols=297 Identities=14% Similarity=0.117 Sum_probs=172.7
Q ss_pred CCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCe
Q 001621 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1043)
Q Consensus 173 ~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V 252 (1043)
++|.+.|+++.|+.+ + +|++|...|.|.+|++.+.+.+..+.. . +...|
T Consensus 11 Rp~~~~v~s~~fqa~--~-rL~sg~~~G~V~~w~lqt~r~~~~~r~-------~---------------------g~~~i 59 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQAN--E-RLMSGLSVGIVKMWVLQTERDLPLIRL-------F---------------------GRLFI 59 (323)
T ss_pred ccccchheehhhccc--h-hhhcccccceEEEEEeecCccchhhhh-------h---------------------cccee
Confidence 467889999999974 4 599999999999999999887665532 0 25678
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCc-eEEE
Q 001621 253 SALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG-RLFV 331 (1043)
Q Consensus 253 ~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~-~llv 331 (1043)
+.+.-. |+ ..+.+-+.|+.|.+|++.-+..+.. +..++.++.||-..=...+... .+++
T Consensus 60 t~lq~~-p~-d~l~tqgRd~~L~lw~ia~s~~i~i------------------~Si~~nslgFCrfSl~~~~k~~eqll~ 119 (323)
T KOG0322|consen 60 TNLQSI-PN-DSLDTQGRDPLLILWTIAYSAFISI------------------HSIVVNSLGFCRFSLVKKPKNSEQLLE 119 (323)
T ss_pred eceeec-CC-cchhhcCCCceEEEEEccCcceEEE------------------eeeeccccccccceeccCCCcchhhee
Confidence 888765 65 6788999999999999976543321 1122333333321000012222 3444
Q ss_pred ecCCCC--------CCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEe
Q 001621 332 YGGDEI--------GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFY 403 (1043)
Q Consensus 332 ~gg~~~--------~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~ 403 (1043)
+-+... +++-.+.+. +-.. .+-.|.+..+. -+..+.....+++.-++|.+..|
T Consensus 120 yp~rgsde~h~~D~g~~tqv~i~--dd~~------------~~Klgsvmc~~-----~~~~c~s~~lllaGyEsghvv~w 180 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGGDTTQVQIA--DDSE------------RSKLGSVMCQD-----KDHACGSTFLLLAGYESGHVVIW 180 (323)
T ss_pred cCCcccchhhhhccCccceeEcc--Cchh------------ccccCceeeee-----ccccccceEEEEEeccCCeEEEE
Confidence 432210 011111111 1000 00011111111 00011122345566789999999
Q ss_pred ecccceeecccCCCCCCCCCccCCcccC------CCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCccccc
Q 001621 404 DNASLTTLLSQQEKKPSVCPVEFPGVIP------ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWP 477 (1043)
Q Consensus 404 d~~~~~~~l~~~~~~~~~~~~~~~~~l~------~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~p 477 (1043)
|..+-.+.+ ++|+..+ .|..+++.+.+
T Consensus 181 d~S~~~~~~------------~~~~~~kv~~~~ash~qpvlsldy----------------------------------- 213 (323)
T KOG0322|consen 181 DLSTGDKII------------QLPQSSKVESPNASHKQPVLSLDY----------------------------------- 213 (323)
T ss_pred EccCCceee------------ccccccccccchhhccCcceeeee-----------------------------------
Confidence 964322222 1221110 01112222222
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC
Q 001621 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1043)
Q Consensus 478 l~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d 557 (1043)
.+.-+.=|+|+.|..+-.|.+......+ .+.. .+.+ .+..|..+..-||++.||+++.|
T Consensus 214 --------------as~~~rGisgga~dkl~~~Sl~~s~gsl--q~~~---e~~l--knpGv~gvrIRpD~KIlATAGWD 272 (323)
T KOG0322|consen 214 --------------ASSCDRGISGGADDKLVMYSLNHSTGSL--QIRK---EITL--KNPGVSGVRIRPDGKILATAGWD 272 (323)
T ss_pred --------------chhhcCCcCCCccccceeeeeccccCcc--cccc---eEEe--cCCCccceEEccCCcEEeecccC
Confidence 1222233456666667777665442111 0100 0111 12468889999999999999999
Q ss_pred ccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 558 G~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
|.+|||.+++.+. ..+|..|.+.|.+|||+|+...+|.|+.|++|.+|++
T Consensus 273 ~RiRVyswrtl~p-------------------------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSWRTLNP-------------------------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEeccCCc-------------------------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999987543 3567889999999999999889999999999999996
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=6.6e-14 Score=160.68 Aligned_cols=216 Identities=16% Similarity=0.250 Sum_probs=158.4
Q ss_pred ccCccceeeeccc----CCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCC--ceEE--EecCCCCCeEEEEEecC-CCE
Q 001621 21 AADLNLRIAVHYG----IPATASILAFDH-IQRLLAIATLDGRIKVIGGDG--IEGL--LISPSQLPYKNLEFLQN-QGF 90 (1043)
Q Consensus 21 ~~~~~~~~~~~~G----~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~--~~~~--~~~~~~~~V~~l~Fs~d-~~~ 90 (1043)
+.+|++....+.+ ....+..|.|.. ..++||+++..|.|.+||+.. -+.+ .--+|...+.++.|++- ..+
T Consensus 69 ~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 69 PNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNI 148 (839)
T ss_pred cccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccE
Confidence 5555555444422 233455577764 357999999999999999754 1222 22346778999999874 367
Q ss_pred EEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccc
Q 001621 91 LISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1043)
|++++.||+|++||++..+-..++... ..|..|.|+|. +++++++.++|.+++|++..-+..+.
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------------- 214 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------------- 214 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--------------
Confidence 999999999999999999888887654 68999999997 66788999999999998754211110
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCC
Q 001621 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1043)
Q Consensus 169 ~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 248 (1043)
...+|.++|.++.|||+ +.+|++|++|+.|+|||+.+++......- + -
T Consensus 215 --k~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~~~~~~~~tI-------n---------------------T 262 (839)
T KOG0269|consen 215 --KLTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTDSRAKPKHTI-------N---------------------T 262 (839)
T ss_pred --HhhcccCceEEEeecCC--CceeeecCCCccEEEEeccCCCccceeEE-------e---------------------e
Confidence 12468999999999994 77899999999999999987654221100 0 1
Q ss_pred CCCeEEEEEecCCCC-EEEEEE--cCCcEEEEcCCCCC
Q 001621 249 EKEISALCWASSSGS-ILAVGY--IDGDILLWNTSTTA 283 (1043)
Q Consensus 249 ~~~V~sl~w~sp~g~-~l~tg~--~DG~I~iWd~~tg~ 283 (1043)
..+|.++.|- |..+ +|++++ .|-.|++||+...-
T Consensus 263 iapv~rVkWR-P~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 263 IAPVGRVKWR-PARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cceeeeeeec-cCccchhhhhhccccceEEEEeecccc
Confidence 4678999997 7765 566665 47889999997654
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.53 E-value=3.8e-13 Score=143.10 Aligned_cols=205 Identities=15% Similarity=0.274 Sum_probs=143.8
Q ss_pred CCCeEEEEEec--CCCEEEEEECCCcEEEEECCCC----------------ceeEEeecC-CCEEEEEEeCCCC-EEEEE
Q 001621 76 QLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESR----------------SLACCLKWE-SNITAFSVISGSH-FMYIG 135 (1043)
Q Consensus 76 ~~~V~~l~Fs~--d~~~Lvs~s~d~~I~vWdl~t~----------------~~l~~~~~~-~~Vtav~~sp~~~-~l~vG 135 (1043)
...|+.+.-.+ +..+.++-+..|.|+|||+... ++++++..+ +.=.+++++|--. .|++|
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 34455555544 4455666678899999998542 345556544 4567899999433 37788
Q ss_pred eCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe---E
Q 001621 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---I 212 (1043)
Q Consensus 136 ~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~---~ 212 (1043)
..-+.|++|.+....-++-+.|| .+|...|..|+|+|..++ .+++++-||.|+|||++.+. +
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf--------------~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPF--------------TGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccceEeeeeccCceeecCccc--------------cccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 88888999987764322221111 247788999999998544 69999999999999999873 2
Q ss_pred EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCC
Q 001621 213 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGS 292 (1043)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~ 292 (1043)
+.+. .|...|.-+.|+ .+-..||+|+.||++++||++.-+.-
T Consensus 296 ~~~k------------------------------Ah~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~------- 337 (440)
T KOG0302|consen 296 VSTK------------------------------AHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSG------- 337 (440)
T ss_pred eEee------------------------------ccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCC-------
Confidence 2221 136789999997 77779999999999999999765432
Q ss_pred CCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcC
Q 001621 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 293 ~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~ 349 (1043)
.|+..+.+ |+.||.++.|.. .....+.++|.| +.+++|++.
T Consensus 338 -~pVA~fk~----Hk~pItsieW~p-------~e~s~iaasg~D----~QitiWDls 378 (440)
T KOG0302|consen 338 -QPVATFKY----HKAPITSIEWHP-------HEDSVIAASGED----NQITIWDLS 378 (440)
T ss_pred -CcceeEEe----ccCCeeEEEecc-------ccCceEEeccCC----CcEEEEEee
Confidence 35554444 677999999964 334455555554 679999864
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.53 E-value=4.3e-14 Score=154.36 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=160.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
..+||.+||.++..++..||.|.|||..+...+.++. |...+.+|..++||..|-+++-|++|+-||+++++.+....+
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence 3568889999999999999999999999998888886 578999999999999999999999999999999999988889
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
.+.|-++..+|.++|+++|.+++.|.|....... .|.+. .|.+-|.+|.|.+. |+++++.
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlh------------lheScVLSlKFa~c--GkwfvSt 651 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLH------------LHESCVLSLKFAYC--GKWFVST 651 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCcc------ceeec------------ccccEEEEEEeccc--Cceeeec
Confidence 9999999999999999999999987655433211 13222 35677999999996 9999999
Q ss_pred ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001621 197 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1043)
Q Consensus 197 ~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~i 276 (1043)
+.|..+-.|..--|..++... +...|.|+..+ .|.++|+||+.|..-.+
T Consensus 652 GkDnlLnawrtPyGasiFqsk------------------------------E~SsVlsCDIS-~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSK------------------------------ESSSVLSCDIS-FDDKYIVTGSGDKKATV 700 (705)
T ss_pred CchhhhhhccCccccceeecc------------------------------ccCcceeeeec-cCceEEEecCCCcceEE
Confidence 999999999877665543221 36778888885 89999999999987777
Q ss_pred EcC
Q 001621 277 WNT 279 (1043)
Q Consensus 277 Wd~ 279 (1043)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 754
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=138.30 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=60.5
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec-C-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeC
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-E-SNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~-~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~ 148 (1043)
++...|+++.|-.+ .+|.++...|.|.+|++.+.+.+..+.. + ..|+.+...|+ +.+.+-..|+.+-+|+++.
T Consensus 12 p~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 12 PHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred cccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 56788999999888 5699999999999999999998888873 3 57888988887 5566777788888887764
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.52 E-value=1.6e-12 Score=136.37 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=126.4
Q ss_pred CCCCeEEEEEec----CCCEEEEEECCCcEEEEECCCC---ceeEEeec---CCCEEEEEEeCC----CCEEEEEeCCCc
Q 001621 75 SQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLESR---SLACCLKW---ESNITAFSVISG----SHFMYIGDENGL 140 (1043)
Q Consensus 75 ~~~~V~~l~Fs~----d~~~Lvs~s~d~~I~vWdl~t~---~~l~~~~~---~~~Vtav~~sp~----~~~l~vG~~dG~ 140 (1043)
+..+|-.++|.+ +...+++....+++.++..... +.++++.. +.....++++.+ ..++++|+.-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 456788888874 4456777778889999997643 45555532 355666666544 458899999999
Q ss_pred EEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcc
Q 001621 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1043)
Q Consensus 141 v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~ 220 (1043)
|+|+++... ++. +..++|...|..|.++|. ..+++++++.|..|++||+++..++..+++-
T Consensus 117 IrVid~~~~--~~~---------------~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~- 177 (385)
T KOG1034|consen 117 IRVIDVVSG--QCS---------------KNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGV- 177 (385)
T ss_pred EEEEecchh--hhc---------------cceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEeccc-
Confidence 999887652 222 112467889999999997 5678999999999999999999999999861
Q ss_pred cccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
+.|...|.++.|+ ++|.+|++++-|.+|.+|+++..+
T Consensus 178 -------------------------egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 178 -------------------------EGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred -------------------------ccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhH
Confidence 1247889999996 999999999999999999998654
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.50 E-value=1.1e-11 Score=127.91 Aligned_cols=317 Identities=12% Similarity=0.128 Sum_probs=195.6
Q ss_pred CCCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccc-cccCCCCCCCCCeEEEEecCCCCCCEEE
Q 001621 117 ESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS-EKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1043)
Q Consensus 117 ~~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~-~~~~~~~~~~~~V~sl~~sp~d~g~~ll 194 (1043)
.+.|+++.+++. |+||++|..||.|-||++......-. .+.+... .+ -....+..|.-.|.++.|-|-|.| ++.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~-~c~v~~~h~~~Hky~iss~~WyP~DtG-mFt 118 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKH-KCIVAKQHENGHKYAISSAIWYPIDTG-MFT 118 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceehe-eeeccccCCccceeeeeeeEEeeecCc-eee
Confidence 378999999986 89999999999999999864321100 0111100 00 000123456778999999999888 578
Q ss_pred EEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC---CEEEEEEcC
Q 001621 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG---SILAVGYID 271 (1043)
Q Consensus 195 ~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g---~~l~tg~~D 271 (1043)
+++-|.++++||..+-+....|.- +..|.+-+|+ |-. ..||+|+.|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m------------------------------e~~VYshamS-p~a~sHcLiA~gtr~ 167 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM------------------------------EGKVYSHAMS-PMAMSHCLIAAGTRD 167 (397)
T ss_pred cccccceEEEeecccceeeEEeec------------------------------CceeehhhcC-hhhhcceEEEEecCC
Confidence 888899999999999877665532 3445555553 543 368899999
Q ss_pred CcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEEEEcCcc
Q 001621 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1043)
Q Consensus 272 G~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv~~l~~~ 351 (1043)
-.|++-|+.+|.....+ ..|+..|..+.|+ |...-+|++|+-| ..+++|++.--
T Consensus 168 ~~VrLCDi~SGs~sH~L---------------sGHr~~vlaV~Ws-------p~~e~vLatgsaD----g~irlWDiRra 221 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTL---------------SGHRDGVLAVEWS-------PSSEWVLATGSAD----GAIRLWDIRRA 221 (397)
T ss_pred CcEEEEeccCCcceeee---------------ccccCceEEEEec-------cCceeEEEecCCC----ceEEEEEeecc
Confidence 99999999998754421 1266788999995 4456778888765 46778764311
Q ss_pred cccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCccCCcccC
Q 001621 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIP 431 (1043)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~~~~~l~ 431 (1043)
+|.+.+.|. ..+ ..|+.+.
T Consensus 222 ---------------------------------------------sgcf~~lD~---------hn~-------k~~p~~~ 240 (397)
T KOG4283|consen 222 ---------------------------------------------SGCFRVLDQ---------HNT-------KRPPILK 240 (397)
T ss_pred ---------------------------------------------cceeEEeec---------ccC-------ccCcccc
Confidence 112222231 110 1111110
Q ss_pred CCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEe
Q 001621 432 ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 511 (1043)
Q Consensus 432 ~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD 511 (1043)
. ..+ +.|-+. .+ +++.++..+++.+.|..+|+|+
T Consensus 241 ~------n~a------------------------------------h~gkvn---gl-a~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 241 T------NTA------------------------------------HYGKVN---GL-AWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred c------ccc------------------------------------ccceee---ee-eecccchhhhhccCccceEEee
Confidence 0 000 001111 12 5778888999999999999999
Q ss_pred CCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCC
Q 001621 512 ATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGK 591 (1043)
Q Consensus 512 ~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 591 (1043)
...|. .++..-..-+....-...+. +. +.++..++---.+|.+.++.+-.+..
T Consensus 275 ~~~G~----ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~--------------------- 327 (397)
T KOG4283|consen 275 MESGR----NTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF--------------------- 327 (397)
T ss_pred cccCc----ccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE---------------------
Confidence 99887 22221000000000001222 23 34444443333446666766654321
Q ss_pred cceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 592 ISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 592 ~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
...+..|-..|.|.++-|+=+..-+|..|+.+..|-.
T Consensus 328 ----ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 ----VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ----EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1346788888999999999888999999999999976
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.50 E-value=6.6e-12 Score=136.91 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=101.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC-Ccccc
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS-LDAKN 573 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~-~~~~~ 573 (1043)
..++||++-|+|++|||+..-.-+.. + -+..-.|+.+|.+..|||++..|++.+.|..|||||..-- .....
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s----p---~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS----P---FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC----c---ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 34799999999999999875331110 0 1122368889999999999999999999999999997411 00000
Q ss_pred eeeeccCCCceeeecC-CCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeE
Q 001621 574 FLFVLETKSEVHALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1043)
Q Consensus 574 ~~f~~~~~~~~~~~~~-~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~ 652 (1043)
...|.. -.-.+ |-. .--.+|.|+-.++++|-.-.-|-|+|-.+++.+...+.. ....|.
T Consensus 408 ----------~~~I~Hn~~t~R-------wlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P--~~~tI~ 467 (498)
T KOG4328|consen 408 ----------LGTIPHNNRTGR-------WLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP--ESSTIP 467 (498)
T ss_pred ----------cceeeccCcccc-------ccc-chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc--cccccc
Confidence 000000 00001 111 223479999999999999999999999999977665431 223344
Q ss_pred E-EEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 653 S-MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 653 s-l~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
+ .+|.|.. ..++.-++.-|.|++|-.+.+
T Consensus 468 ~vn~~HP~~---------------------~~~~aG~~s~Gki~vft~k~~ 497 (498)
T KOG4328|consen 468 SVNEFHPMR---------------------DTLAAGGNSSGKIYVFTNKKS 497 (498)
T ss_pred cceeecccc---------------------cceeccCCccceEEEEecCCC
Confidence 3 3454332 123444466788998865543
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.49 E-value=3.9e-13 Score=146.35 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=159.0
Q ss_pred ccceeeeccc-CCCCeEEEEEcCCC--CEEEEEEcCCcEEEEcCCCc-----eEEEecCCCCCeEEEEEecC-CCEEEEE
Q 001621 24 LNLRIAVHYG-IPATASILAFDHIQ--RLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQN-QGFLISI 94 (1043)
Q Consensus 24 ~~~~~~~~~G-~~~~v~~lafsp~g--~lLAvgt~dG~I~v~~~~~~-----~~~~~~~~~~~V~~l~Fs~d-~~~Lvs~ 94 (1043)
.+++..+.+- +++.|++++|+|.- +++|+|..-|+|-+|+.... ...+-.+|..+|.+|.|+|. -..+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3444444443 57789999999964 69999999999999998421 23344567889999999994 3679999
Q ss_pred ECCCcEEEEECCCCce--eEEeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCC
Q 001621 95 TNDNEIQVWSLESRSL--ACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1043)
Q Consensus 95 s~d~~I~vWdl~t~~~--l~~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1043)
+-||+|++=|+++... +.+... ...+..+.|+.+...++.|+.-|...+|+...+...... .
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~--~------------- 318 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN--L------------- 318 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh--h-------------
Confidence 9999999999998743 333322 246788889998889999999898888988765432220 1
Q ss_pred CCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 172 ~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
+-|...|.+|+++|. ....|++++.|++++|||++.-..... | +-....|...
T Consensus 319 -~lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~s-------------------p------~lst~~Hrrs 371 (498)
T KOG4328|consen 319 -RLHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKAS-------------------P------FLSTLPHRRS 371 (498)
T ss_pred -hhhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCC-------------------c------ceecccccce
Confidence 224458999999998 455689999999999999975332110 0 0011225788
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEcCC
Q 001621 252 ISALCWASSSGSILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 252 V~sl~w~sp~g~~l~tg~~DG~I~iWd~~ 280 (1043)
|.+++|+ |.|..|+|.+.|..|++||..
T Consensus 372 V~sAyFS-Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 372 VNSAYFS-PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeeeEEc-CCCCceEeeccCCceEEeecc
Confidence 9999996 999999999999999999974
No 160
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=6.4e-12 Score=150.69 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=127.5
Q ss_pred EcCCCceEEEecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC--c-----eeEEee-cCCCEEEEEEeCCCCEE
Q 001621 62 IGGDGIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESR--S-----LACCLK-WESNITAFSVISGSHFM 132 (1043)
Q Consensus 62 ~~~~~~~~~~~~~~~~~V~~l~Fs~d~-~~Lvs~s~d~~I~vWdl~t~--~-----~l~~~~-~~~~Vtav~~sp~~~~l 132 (1043)
|...+.-+...++|...|..++.+++. .++++++.||+|++||+..- . ...++. ..+.+.++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 555555554555667777788877755 89999999999999998651 1 122333 34789999999999999
Q ss_pred EEEeCCCcEEEEEEeCCCC-eEeeeceeecccccccccCCCCCCCCCeEEEE-ecCCCCCC-EEEEEECCCeEEEEEccC
Q 001621 133 YIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVL-PHPNSSGN-RVLIAYENALVILWDVSE 209 (1043)
Q Consensus 133 ~vG~~dG~v~v~~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~-~sp~d~g~-~ll~~~~dg~I~lWd~~~ 209 (1043)
++|+.||.|++..+|.... +.....-++++. ...+.|+++. |.-. ... +|+.+...+.|..||++.
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~----------~~~g~vv~m~a~~~~-~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL----------KKDGVVVSMHAFTAI-VQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccc----------cCCCceEEeeccccc-ccceeEEEEEeccceEEecchh
Confidence 9999999999988876211 111001122211 1234455553 3332 343 678888899999999988
Q ss_pred CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
...+..+.. + .+.+.|+++|-. |.+.+++.|...|.+.+||+.=+.
T Consensus 1183 ~~~~w~lk~-------~--------------------~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1183 RHDAWRLKN-------Q--------------------LRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred hhhHHhhhc-------C--------------------ccccceeEEEec-CCceEEEEecCCceEEEEEeecCc
Confidence 765544432 1 126789999996 999999999999999999996543
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.49 E-value=6.5e-13 Score=141.36 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=127.8
Q ss_pred cccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCceEEE----ecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEE
Q 001621 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLL----ISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWS 104 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~~~~----~~~~~~~V~~l~Fs~d-~~~Lvs~s~d~~I~vWd 104 (1043)
..||.+.-.+|+|||. ...|++|.--+.|++|......... ...|...|-.|+|+|. .+.+++++.|+.|+|||
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWD 286 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWD 286 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEE
Confidence 3577788899999994 3457788777899999875544332 1126789999999994 36889999999999999
Q ss_pred CCCC---ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEE
Q 001621 105 LESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1043)
Q Consensus 105 l~t~---~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1043)
++.+ .++.+-.+.+.|+.+.++-.-.+|++|++||+++||++....... | +....-|..||++
T Consensus 287 iRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~---p-----------VA~fk~Hk~pIts 352 (440)
T KOG0302|consen 287 IRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ---P-----------VATFKYHKAPITS 352 (440)
T ss_pred ecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC---c-----------ceeEEeccCCeeE
Confidence 9998 455554566899999999988899999999999999986532110 0 0011347889999
Q ss_pred EEecCCCCCCEEEEEECCCeEEEEEccCC
Q 001621 182 VLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 182 l~~sp~d~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
|.|+|.+++ .+++++.|..|.|||+.-.
T Consensus 353 ieW~p~e~s-~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 353 IEWHPHEDS-VIAASGEDNQITIWDLSVE 380 (440)
T ss_pred EEeccccCc-eEEeccCCCcEEEEEeecc
Confidence 999999766 4899999999999999643
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.9e-12 Score=140.39 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=107.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCc
Q 001621 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1043)
Q Consensus 491 ~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~ 570 (1043)
|+|....|+.+. -..|||||+....+ ...+... .-.|..|+.+|.|..|++|+.|+.+..||+..+..
T Consensus 574 FHPs~p~lfVaT-q~~vRiYdL~kqel--vKkL~tg---------~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 574 FHPSKPYLFVAT-QRSVRIYDLSKQEL--VKKLLTG---------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred ecCCCceEEEEe-ccceEEEehhHHHH--HHHHhcC---------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 555555555555 35799999987552 2222211 23799999999999999999999999999976532
Q ss_pred ccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc-------CCceEEEEeec
Q 001621 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM-------NLLSVLFFTDD 643 (1043)
Q Consensus 571 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~-------~~~~~l~~~~~ 643 (1043)
+...+..|...|++|+|++.-.++|+|+.||++.|+-- ++|-++--..+
T Consensus 642 ------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 642 ------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred ------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 12346789999999999999999999999999998862 44444321112
Q ss_pred CCC---CCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEE
Q 001621 644 ISG---SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1043)
Q Consensus 644 ~~~---~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~ 697 (1043)
..+ ..-+|....|. |...+||+++.||+|++|
T Consensus 698 ~gH~~~~~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 111 12457778884 345789999999999998
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.3e-13 Score=161.80 Aligned_cols=269 Identities=21% Similarity=0.344 Sum_probs=171.3
Q ss_pred eeEEeecCCCEEEEEEeCCCCE----EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 110 LACCLKWESNITAFSVISGSHF----MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~----l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
++.++....+.+.+++.+.+.. ++.|.+||.|-+|+.+.. +.+.. ...+.....|.++|..|.|+
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~----------~~~~~-~~~la~~~~h~G~V~gLDfN 125 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI----------IANAS-EEVLATKSKHTGPVLGLDFN 125 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhh----------ccCcc-hHHHhhhcccCCceeeeecc
Confidence 4445555567788888877765 889999999988876541 00000 01111224688999999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
|. .++.|++|..+|.|.|||+..-+.-...+. ......|.+++|+-....+|
T Consensus 126 ~~-q~nlLASGa~~geI~iWDlnn~~tP~~~~~---------------------------~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 126 PF-QGNLLASGADDGEILIWDLNKPETPFTPGS---------------------------QAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred cc-CCceeeccCCCCcEEEeccCCcCCCCCCCC---------------------------CCCcccceEeccchhhhHHh
Confidence 97 577899999999999999986432222111 01267899999984556778
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
++++.+|.+.|||++..+. +.++.. ...+..+..+.|..+ ..++++++.+++. ..++.+
T Consensus 178 AS~s~sg~~~iWDlr~~~p-----------ii~ls~--~~~~~~~S~l~WhP~------~aTql~~As~dd~--~Pviql 236 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKP-----------IIKLSD--TPGRMHCSVLAWHPD------HATQLLVASGDDS--APVIQL 236 (1049)
T ss_pred hccCCCCCceeccccCCCc-----------cccccc--CCCccceeeeeeCCC------CceeeeeecCCCC--CceeEe
Confidence 8999999999999976543 222221 223345667788542 1356666665541 123333
Q ss_pred EEcCcccccccceeeeeEeecCCCceeEEEEeecCCCCCCCCccEEEEEcCCCeEEEeecccceeecccCCCCCCCCCcc
Q 001621 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1043)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~~g~~~~~~l~vl~~~G~l~~~d~~~~~~~l~~~~~~~~~~~~~ 425 (1043)
|++.+.. .+.
T Consensus 237 WDlR~as--------------------------------------------------------------------sP~-- 246 (1049)
T KOG0307|consen 237 WDLRFAS--------------------------------------------------------------------SPL-- 246 (1049)
T ss_pred ecccccC--------------------------------------------------------------------Cch--
Confidence 3321100 000
Q ss_pred CCcccCCCCCcceEEEEEeccCCCCchhhHhHHHHhcccCCCCCccCcccccccCCCCCCCCccccCCCCcEEEEEeCCC
Q 001621 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1043)
Q Consensus 426 ~~~~l~~~~~~it~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pl~Gg~~~~~~~~~~s~~~~~l~tg~~Dg 505 (1043)
..+..|...|.++ .| ...|..+|+|++.|+
T Consensus 247 --k~~~~H~~Gilsl----------------------------------sW--------------c~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 247 --KILEGHQRGILSL----------------------------------SW--------------CPQDPRLLLSSGKDN 276 (1049)
T ss_pred --hhhcccccceeee----------------------------------cc--------------CCCCchhhhcccCCC
Confidence 0011121111111 11 224557899999999
Q ss_pred cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCC-eEEEEecCccEEEEEecCCC
Q 001621 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 506 tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~-~La~g~~dG~V~i~~~~~~~ 569 (1043)
.|-+|+..+++ .+..+. .....+..+.|+|..- .+++++-||.|-||.+....
T Consensus 277 ~ii~wN~~tgE--vl~~~p---------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 RIICWNPNTGE--VLGELP---------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CeeEecCCCce--EeeecC---------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999987 333332 2335899999999766 88999999999999998754
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.8e-12 Score=147.17 Aligned_cols=165 Identities=20% Similarity=0.346 Sum_probs=114.0
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec----CCCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCC--
Q 001621 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW----ESNITAFSVISG--SHFMYIGDENGLMSVIKYDAD-- 149 (1043)
Q Consensus 78 ~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~----~~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~-- 149 (1043)
+-+.+.|+|=...+++++..-.|+|||.+.++.+..|.. ...|+.+.+..+ ..++++|++||.||||+--.+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 356677888777799998888999999999999887753 378999988754 457999999999999963221
Q ss_pred -CCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccc
Q 001621 150 -EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1043)
Q Consensus 150 -~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~ 228 (1043)
+.++. ..|..++.. .+...... .-+.|+.. .|. |+++++-..|+|||+....+...+.+
T Consensus 1146 ~~~eLV-----Taw~~Ls~~--~~~~r~~~-~v~dWqQ~-~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~---------- 1205 (1387)
T KOG1517|consen 1146 KKPELV-----TAWSSLSDQ--LPGARGTG-LVVDWQQQ-SGH-LLVTGDVRSIRIWDAHKEQVVADIPY---------- 1205 (1387)
T ss_pred CCceeE-----Eeecccccc--CccCCCCC-eeeehhhh-CCe-EEecCCeeEEEEEecccceeEeeccc----------
Confidence 11221 111111111 11112222 55678775 475 77777788999999988776655432
Q ss_pred cCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCC
Q 001621 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~ 280 (1043)
+ ...-|+++.=..+.|..|+.|..||.|+++|..
T Consensus 1206 --------~----------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1206 --------G----------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred --------C----------CCccceeecccccCCceEEEeecCCceEEeecc
Confidence 0 145577765444668999999999999999974
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.3e-11 Score=145.79 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=112.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCcee-eeeeccceeeEEecCCCCC--eEEEEEecCCC-eEEEEecCccEEEEEecCC
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKL-ICALDAEVQGIEVAGSRAP--VSTLSFCFINS-SLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~-l~~l~~~~~~v~~~~~~~~--V~~l~fspd~~-~La~g~~dG~V~i~~~~~~ 568 (1043)
..|+++++|.+||+||++|......+. ++.. ..|+.. |..+.|-+.|- .|++|+.+|.|++||+..+
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~---------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY---------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceee---------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 447899999999999999988765321 1111 245555 99999998654 5999999999999999875
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCC--C-CEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--S-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~--~-~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~ 645 (1043)
..+... ....|- | ..|+|..++....+|+|+. +.|+|||+.+..+-... ..+
T Consensus 1290 ~~e~~~-----------------------~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k-~n~ 1344 (1387)
T KOG1517|consen 1290 SKETFL-----------------------TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK-YNP 1344 (1387)
T ss_pred cccccc-----------------------eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc-cCc
Confidence 322110 112232 3 5999999999999999999 99999999875442111 111
Q ss_pred ----CCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCC
Q 001621 646 ----GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1043)
Q Consensus 646 ----~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~ 703 (1043)
.....+.+|+|.|+- ..|++|..|..|.+|..+.+.
T Consensus 1345 ~F~~q~~gs~scL~FHP~~----------------------~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHR----------------------LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccCcCCCcceeeecchh----------------------HhhhhccCCceEEEeecCCcC
Confidence 123567999997653 448999999999999876543
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.47 E-value=7.1e-12 Score=141.45 Aligned_cols=114 Identities=17% Similarity=0.362 Sum_probs=81.8
Q ss_pred CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEcc
Q 001621 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1043)
Q Consensus 129 ~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~ 208 (1043)
...||++.++|.|.+++.... . |+... ..+..+..|...|..+.|-|. +. +|++++.|.++++||++
T Consensus 64 eHiLavadE~G~i~l~dt~~~--~-----fr~ee----~~lk~~~aH~nAifDl~wapg-e~-~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSI--V-----FRLEE----RQLKKPLAHKNAIFDLKWAPG-ES-LLVSASGDSTIRPWDVK 130 (720)
T ss_pred cceEEEecCCCceeeecchhh--h-----cchhh----hhhcccccccceeEeeccCCC-ce-eEEEccCCceeeeeeec
Confidence 457999999999988664331 1 22110 112234578899999999994 34 58899999999999999
Q ss_pred CCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 209 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
+++++...-+ ..|...|.++||.--|...+++|+.||.|.+||+.-.
T Consensus 131 ~s~l~G~~~~---------------------------~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 131 TSRLVGGRLN---------------------------LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred cceeecceee---------------------------cccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 9887643100 1137889999997334567899999999999998643
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.46 E-value=4.2e-12 Score=139.00 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=70.0
Q ss_pred ccCCC-CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 490 KCHSV-DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 490 ~~s~~-~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
+|+|. ..+|++-+.|..|.+||........-..+ ..|.++|+|+++|.+|+.|+..|.|+.||++..
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eecCCccceEEEecccceEEEeecccccccceeee------------cCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 35554 45888999999999999986552211111 248999999999999999999999999999864
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCC
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG 615 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg 615 (1043)
+. +..++..|...||+|+|-|.-
T Consensus 283 k~------------------------Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 283 KA------------------------PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CC------------------------CceEeeecccceeEEEeeecc
Confidence 32 234568899999999998775
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.9e-12 Score=133.40 Aligned_cols=214 Identities=15% Similarity=0.103 Sum_probs=158.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc------eE--EEecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI------EG--LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~------~~--~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vW 103 (1043)
.||.+.|+++.|+.++++||+|..|-.++||..+.. .. +...+|+..|-+|+|.....+|.++..+++|.+-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 488899999999999999999999999999986432 11 2345567899999999988999999999999999
Q ss_pred ECCCCceeEEeecC---CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 104 SLESRSLACCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 104 dl~t~~~l~~~~~~---~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
|+++.+.+..+... +.|..+..+|..+.+++.+.+|.|.+|+......... ++... .......
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~~~~A------------N~~~~F~ 198 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--LVLPA------------NSGKNFY 198 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--eeeec------------CCCccce
Confidence 99999999888655 6899999999999999999999999988654322111 22221 2234567
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
++.|+|. ...+|++..+.+-+-|||.+..... ...+. .+.+. .+...-.++.|+
T Consensus 199 t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~-~~~L~----------------------~~~~~~M~~~~~- 253 (609)
T KOG4227|consen 199 TAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSM-FKGLP----------------------QENTEWMGSLWS- 253 (609)
T ss_pred eeeecCC-CceeEEeccccCCCCceeeccccchHHhhhc-cccCc----------------------ccchhhhheeeC-
Confidence 8899997 4667888888888899998765321 11110 00000 012344677896
Q ss_pred CCCCEEEEEEcCCcEEEEcCCCCCc
Q 001621 260 SSGSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 260 p~g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
|+|..+++--.-..-.++|+-+..+
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccc
Confidence 9999998876666667777765443
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.4e-12 Score=132.66 Aligned_cols=195 Identities=13% Similarity=0.204 Sum_probs=139.9
Q ss_pred CEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEeecC----CCE
Q 001621 48 RLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESRSLACCLKWE----SNI 120 (1043)
Q Consensus 48 ~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~--d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~----~~V 120 (1043)
..+|++-..|.|++||......+-.+. +...+..+.|.. ...-+++++.||+|++||+++......+.+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 789999999999999987765554333 234555666755 2234889999999999999998776666543 367
Q ss_pred EEEEEeCCCCEEEEEeC----CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 121 TAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 121 tav~~sp~~~~l~vG~~----dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
.|++.....+.++.|++ +-.|.+|++......+. .....|...|++|.|||.+ .+.||+|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~---------------~~~eSH~DDVT~lrFHP~~-pnlLlSG 184 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR---------------QLNESHNDDVTQLRFHPSD-PNLLLSG 184 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhh---------------hhhhhccCcceeEEecCCC-CCeEEee
Confidence 88888778889998876 34455666544211011 0123588899999999984 6679999
Q ss_pred ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001621 197 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1043)
Q Consensus 197 ~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~i 276 (1043)
+-||.|.|||+.....- ++|-....+...|.++.|.++.-..|.|-+..+++.+
T Consensus 185 SvDGLvnlfD~~~d~Ee--------------------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEE--------------------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred cccceEEeeecCCCcch--------------------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeE
Confidence 99999999999765210 1111111235679999998544467999999999999
Q ss_pred EcCCCCCc
Q 001621 277 WNTSTTAS 284 (1043)
Q Consensus 277 Wd~~tg~~ 284 (1043)
|+.+.+..
T Consensus 239 ~ele~~~~ 246 (376)
T KOG1188|consen 239 YELEDGSE 246 (376)
T ss_pred EEccCCCh
Confidence 99998873
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=1.9e-12 Score=140.73 Aligned_cols=242 Identities=15% Similarity=0.134 Sum_probs=160.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC-ceeeeeeccce---------eeEEecCCCCCeEEEEEecCC-CeEEEEecCccEEE
Q 001621 494 VDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEV---------QGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYI 562 (1043)
Q Consensus 494 ~~~~l~tg~~DgtVriWD~~~~~-l~~l~~l~~~~---------~~v~~~~~~~~V~~l~fspd~-~~La~g~~dG~V~i 562 (1043)
.|+++|.|..|-.|.|||+.--. ..|...|.... ......+|+.+|.+|+|+... ..||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999976433 11222221100 011234799999999999874 57899999999999
Q ss_pred EEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC-CcEEEEEeCCCeEEEEEcCCceEEEEe
Q 001621 563 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1043)
Q Consensus 563 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d-g~~lA~Gs~dg~V~vwD~~~~~~l~~~ 641 (1043)
||+.+... ...+..|.++|.+|+|.|. ..+|.+|+.||+|++.|.+.+......
T Consensus 271 WD~~~g~p-------------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 271 WDVDTGKP-------------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred EEcCCCCc-------------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 99988542 2445679999999999995 678999999999999999965443211
Q ss_pred ecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC-CCeeecC-CCCcCCCceeE
Q 001621 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSS-PWHLKKKVIAI 719 (1043)
Q Consensus 642 ~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~-g~~l~~~-~~~~~~~~~a~ 719 (1043)
- ...+.|-.+.|.++. ..+.+++++||.|+-+|... |+.+-+. .+.....+..+
T Consensus 326 w---k~~g~VEkv~w~~~s---------------------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 326 W---KFDGEVEKVAWDPHS---------------------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV 381 (463)
T ss_pred E---EeccceEEEEecCCC---------------------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence 1 135789999997654 35589999999999999765 4544333 12222222222
Q ss_pred EEEE----e-----ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecce-eEEEEEEEeeCcEEEEeCCChhhhhh
Q 001621 720 SMEV----I-----DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEK-VCGLLLLFQTGAVQIRSLPDLELVME 789 (1043)
Q Consensus 720 ~~~v----~-----~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~-~~~Lv~~~~dG~i~i~slp~l~~~~~ 789 (1043)
..++ . ..+.||++.-...+..++ +.-++...||++. .++ ...|+.++..+.+|||++-.-.-+.+
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~~----~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFAL----DPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred cCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeeccc----CCCcceEEEecCccceEEEeecccChhHHH
Confidence 2111 1 678999986522222221 1123345666654 233 34577888888899999966554443
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=9e-13 Score=158.09 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=160.2
Q ss_pred CCCeEEEEEcCCCC----EEEEEEcCCcEEEEcCCCc------eEEE-ecCCCCCeEEEEEecCCC-EEEEEECCCcEEE
Q 001621 35 PATASILAFDHIQR----LLAIATLDGRIKVIGGDGI------EGLL-ISPSQLPYKNLEFLQNQG-FLISITNDNEIQV 102 (1043)
Q Consensus 35 ~~~v~~lafsp~g~----lLAvgt~dG~I~v~~~~~~------~~~~-~~~~~~~V~~l~Fs~d~~-~Lvs~s~d~~I~v 102 (1043)
...-..|+|.+.+. +||-|..||.|-+|+.... +.+. ...|.++|+.|.|.+.++ .|++++.||+|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44568899988775 4999999999999996432 1121 223678999999999877 8999999999999
Q ss_pred EECCCCceeEEe---ecCCCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 103 WSLESRSLACCL---KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 103 Wdl~t~~~l~~~---~~~~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
||+..-+.-.++ ...+.|.++++... ...|++|+.+|.+.|||+...+..+. + . . ......
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~---l--s-----~-----~~~~~~ 208 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK---L--S-----D-----TPGRMH 208 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc---c--c-----c-----CCCccc
Confidence 999875443333 34578999999865 45678899999999998875421111 0 0 0 011245
Q ss_pred eEEEEecCCCCCCEEEEEECCC---eEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEE
Q 001621 179 VVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~dg---~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~s 254 (1043)
+..|+|||+ ..++|+++++|. .|.+||++.-. .++.+.+ |...|.+
T Consensus 209 ~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-----------------------------H~~Gils 258 (1049)
T KOG0307|consen 209 CSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-----------------------------HQRGILS 258 (1049)
T ss_pred eeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchhhhcc-----------------------------cccceee
Confidence 889999997 566788888765 78999987532 2333322 4788999
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeec
Q 001621 255 LCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST 317 (1043)
Q Consensus 255 l~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~ 317 (1043)
+.|+..|..++++++.|+.|..|+.++++.....+ .....++.++||.
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---------------~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---------------AQGNWCFDVQWCP 306 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------------CCCcceeeeeecC
Confidence 99974444889999999999999999987554211 1234677888864
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.42 E-value=9.9e-12 Score=133.90 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=111.4
Q ss_pred cCCCCc-EEEEEeCCCcEEEEeCCCCCceeeeeecccee-eEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 491 CHSVDR-VYLAGYHDGSVRIWDATYPVFKLICALDAEVQ-GIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 491 ~s~~~~-~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~-~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
|.++.. .++||+.|..||+|-+..+....-. ..+. .-.++.|..+|+++-|+|+|..||+|+++|.|.+|....-
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 444433 8999999999999987665421100 0111 1246789999999999999999999999999999998642
Q ss_pred CcccceeeeccC----CCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecC
Q 001621 569 LDAKNFLFVLET----KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1043)
Q Consensus 569 ~~~~~~~f~~~~----~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~ 644 (1043)
+. +-.++ .++.+ .....+.+|...|..|+|+|++.++++|+.|.++++||+..+.++...
T Consensus 98 ~~-----~~~d~e~~~~ke~w--------~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~--- 161 (434)
T KOG1009|consen 98 RI-----FDADTEADLNKEKW--------VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL--- 161 (434)
T ss_pred CC-----ccccchhhhCccce--------EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec---
Confidence 11 00001 01111 222457889999999999999999999999999999999999887553
Q ss_pred CCCCCCeEEEEEEeec
Q 001621 645 SGSSSPIISMTWTEFK 660 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~ 660 (1043)
..+...|+-++|.+.+
T Consensus 162 ~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLN 177 (434)
T ss_pred cccccccceeecchhh
Confidence 2377889999998654
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.3e-12 Score=138.67 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=146.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEE-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec-
Q 001621 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW- 116 (1043)
Q Consensus 39 ~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~-~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~- 116 (1043)
.++||+++|+.||+|..||++|||+.++.+.++ ...++..|++|.|+||+.+|++++.| ..+||+++++..+.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999976655544 34467899999999999999999999 999999999977766642
Q ss_pred --CCCEEEEEEeCCC--CEEE---EEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 117 --ESNITAFSVISGS--HFMY---IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 117 --~~~Vtav~~sp~~--~~l~---vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
+.....+.|+.+. ..++ .-...+.|+.+++..-.+. . + ++ .. + .......|.+++.++ +
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~---~-l~--~~-~----~~~~~~siSsl~VS~--d 292 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-N---F-LR--LR-K----KIKRFKSISSLAVSD--D 292 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-c---c-cc--hh-h----hhhccCcceeEEEcC--C
Confidence 2356666776555 2222 2223355666554331110 0 0 00 00 0 112345799999998 5
Q ss_pred CCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEE
Q 001621 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1043)
Q Consensus 190 g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~ 269 (1043)
|++++.|+.+|.|.|++..+-+.++... ++ |...|+.+.|+ |+.+++++.+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk--------~a--------------------H~~~VT~ltF~-Pdsr~~~svS 343 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVK--------EA--------------------HLGFVTGLTFS-PDSRYLASVS 343 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeeh--------hh--------------------heeeeeeEEEc-CCcCcccccc
Confidence 9999999999999999998877766542 22 36789999996 9999999999
Q ss_pred cCCcEEEEcCCC
Q 001621 270 IDGDILLWNTST 281 (1043)
Q Consensus 270 ~DG~I~iWd~~t 281 (1043)
.|..+.+-.+.-
T Consensus 344 s~~~~~v~~l~v 355 (398)
T KOG0771|consen 344 SDNEAAVTKLAV 355 (398)
T ss_pred cCCceeEEEEee
Confidence 998888877643
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=1.1e-10 Score=126.05 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=128.2
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCce---------eEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001621 75 SQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL---------ACCLK-WESNITAFSVISGSHFMYIGDENGLMSV 143 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~-~Lvs~s~d~~I~vWdl~t~~~---------l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v 143 (1043)
...+|..+.|.++.. +|++++.|..|++|-++.... +..+. ++..|+++.|+|+|+.|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 567899999999876 899999999999999987532 23343 3478999999999999999999999999
Q ss_pred EEEeCCCCeEeeece-eecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccc
Q 001621 144 IKYDADEGKLFQLPY-NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1043)
Q Consensus 144 ~~~d~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~ 222 (1043)
|.-...+-.....+- .-+..|..+. ..++|...|..++|+|+ +..+++++-|..+++||+..|.....+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k--~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~d---- 163 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKK--VLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDD---- 163 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEE--EecccccchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccc----
Confidence 986521000000000 0000111111 12457889999999995 77799999999999999999998876643
Q ss_pred cccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
|..-|..++|. |-+++|++-+.|...+..++..
T Consensus 164 -------------------------h~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 164 -------------------------HEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred -------------------------cccccceeecc-hhhhhhhhhccCcccceeeeee
Confidence 36778899997 9999999999998666655543
No 175
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=4.6e-12 Score=138.66 Aligned_cols=198 Identities=10% Similarity=0.161 Sum_probs=158.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
..||+......++.+|...|.|+|||.....+...+ .|+..|+++.+.....||++++..|.|.|-++.++....++..
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 455555555689999999999999998754433222 3578999999998889999999999999999999998888876
Q ss_pred C--CCEEEEEEeCCCCE-EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEE
Q 001621 117 E--SNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1043)
Q Consensus 117 ~--~~Vtav~~sp~~~~-l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~l 193 (1043)
+ ..|.-+.++|..++ |.+++.+|.|.+|++......+. ....|..|...|+|+|.. ...+
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----------------~~~~HsAP~~gicfspsn-e~l~ 224 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----------------ASEAHSAPCRGICFSPSN-EALL 224 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----------------hhhhccCCcCcceecCCc-cceE
Confidence 5 45669999998775 55788999999999876332111 124578899999999974 4457
Q ss_pred EEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCc
Q 001621 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1043)
Q Consensus 194 l~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~ 273 (1043)
++.+-|..|.+||....+....+.| ..+.++++|. ++|.+|+.|...|.
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y------------------------------~~Plstvaf~-~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTY------------------------------SHPLSTVAFS-ECGTYLCAGNSKGE 273 (673)
T ss_pred EEecccceEEEeecccccccceeee------------------------------cCCcceeeec-CCceEEEeecCCce
Confidence 7788899999999998777666655 5678899996 99999999999999
Q ss_pred EEEEcCCCCC
Q 001621 274 ILLWNTSTTA 283 (1043)
Q Consensus 274 I~iWd~~tg~ 283 (1043)
|..||+....
T Consensus 274 ~i~YD~R~~k 283 (673)
T KOG4378|consen 274 LIAYDMRSTK 283 (673)
T ss_pred EEEEecccCC
Confidence 9999997654
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.38 E-value=6.7e-11 Score=123.89 Aligned_cols=247 Identities=11% Similarity=0.145 Sum_probs=170.1
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEcCCCc--------------eEEEecCCCCCeEEEEEe-------cCCCEEEEEECC
Q 001621 39 SILAFDHIQRLLAIATLDGRIKVIGGDGI--------------EGLLISPSQLPYKNLEFL-------QNQGFLISITND 97 (1043)
Q Consensus 39 ~~lafsp~g~lLAvgt~dG~I~v~~~~~~--------------~~~~~~~~~~~V~~l~Fs-------~d~~~Lvs~s~d 97 (1043)
..+.|+|||+.|.+-+.|..+++|....- +..+..+....|...+|. |+..+.++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 45779999999999999999999975321 111222334566666665 455677778889
Q ss_pred CcEEEEECCCCceeEEeecC------CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCC
Q 001621 98 NEIQVWSLESRSLACCLKWE------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1043)
Q Consensus 98 ~~I~vWdl~t~~~l~~~~~~------~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1043)
+-|++||.-+|++..++..- ..-.++.|+|||..|+.|.. .+|+|++..-..+.... |... .+ -
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~v--y~t~----~~---~ 202 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPV--YTTV----TK---G 202 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcc--hhhh----hc---c
Confidence 99999999999998887531 24468999999999999875 56999887432222111 1111 00 0
Q ss_pred CCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 172 ~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
.-+..+-|.+++|+|.+ ...++.++-..++-||....+.++..+++ |...
T Consensus 203 k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llgg-----------------------------h~gG 252 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGG-----------------------------HGGG 252 (406)
T ss_pred cccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecc-----------------------------cCCC
Confidence 01234568899999985 54588888888889999888888877755 3788
Q ss_pred eEEEEEecCCCCEEEEEEc-CCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEE
Q 001621 252 ISALCWASSSGSILAVGYI-DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 330 (1043)
Q Consensus 252 V~sl~w~sp~g~~l~tg~~-DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~ll 330 (1043)
|+-++|. ++|.+|.+|.. |-.|..||+..-. .++..|.-+......+|. |.. +| .++.|
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~----------~pv~~L~rhv~~TNQRI~---FDl-----d~-~~~~L 312 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRYSR----------DPVYALERHVGDTNQRIL---FDL-----DP-KGEIL 312 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehhcc----------chhhhhhhhccCccceEE---Eec-----CC-CCcee
Confidence 9999996 99999999986 7889999996533 234444333222222331 111 34 56778
Q ss_pred EecCCCCCCcceEEEEEcC
Q 001621 331 VYGGDEIGSEEVLTVLSLE 349 (1043)
Q Consensus 331 v~gg~~~~~~~~ltv~~l~ 349 (1043)
++|+.+ ..+.+|++.
T Consensus 313 asG~td----G~V~vwdlk 327 (406)
T KOG2919|consen 313 ASGDTD----GSVRVWDLK 327 (406)
T ss_pred eccCCC----ccEEEEecC
Confidence 888655 578999875
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2e-11 Score=128.93 Aligned_cols=237 Identities=17% Similarity=0.129 Sum_probs=148.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCC-CCeEEEEEecCCCeEEEEec----CccEEEEEecCC
Q 001621 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR-APVSTLSFCFINSSLAVGNE----FGLVYIYNLNGS 568 (1043)
Q Consensus 494 ~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~-~~V~~l~fspd~~~La~g~~----dG~V~i~~~~~~ 568 (1043)
.+..+.+|+.||+||+||+.... ++..+....++ .+-.+++-....+.+++|+. +-.|.+||++..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~---------e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQA---------ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecch---------hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 34578999999999999998754 11122333444 46777777777888998864 578999999876
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC-CcEEEEEeCCCeEEEEEcCCce----EEEEeec
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLS----VLFFTDD 643 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d-g~~lA~Gs~dg~V~vwD~~~~~----~l~~~~~ 643 (1043)
+.... .....|...||+|+|.|+ -.+|++||.||.|.|+|++... +++..
T Consensus 154 qq~l~-----------------------~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-- 208 (376)
T KOG1188|consen 154 QQLLR-----------------------QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-- 208 (376)
T ss_pred cchhh-----------------------hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh--
Confidence 53211 224689999999999996 4799999999999999997652 22222
Q ss_pred CCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCC---------CcCC
Q 001621 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPW---------HLKK 714 (1043)
Q Consensus 644 ~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~---------~~~~ 714 (1043)
.+.+.|-++.|... +|.+ +++.|..++..+|+.+.|......+. ....
T Consensus 209 --N~~sSI~~igw~~~-------------------~ykr--I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~ 265 (376)
T KOG1188|consen 209 --NHGSSIHLIGWLSK-------------------KYKR--IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDN 265 (376)
T ss_pred --cccceeeeeeeecC-------------------Ccce--EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhh
Confidence 24577999999632 4555 77788889999999888763322210 0011
Q ss_pred CceeEE--------EEE-----eccEEEEeeCcccCCCcceeeecccC-CcceeEEeeeecceeEEEEEEEeeCcEEEEe
Q 001621 715 KVIAIS--------MEV-----IDSVRLYSRKSVIQGNNKTVQKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRS 780 (1043)
Q Consensus 715 ~~~a~~--------~~v-----~~~irl~~~~~~~~g~~k~~~k~~~~-~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~s 780 (1043)
....+- ... .+..+++-+.....|..+. ....+. .+-.-+.-+..+.++..|.+++.||.+++|-
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~-~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT-EPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccC-ccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 111110 000 1445555443212221111 001122 1211111122256888999999999999999
Q ss_pred CCChhhhh
Q 001621 781 LPDLELVM 788 (1043)
Q Consensus 781 lp~l~~~~ 788 (1043)
.++-.+..
T Consensus 345 ~~da~e~~ 352 (376)
T KOG1188|consen 345 VEDATEIN 352 (376)
T ss_pred cCCccccc
Confidence 87666554
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=1.2e-10 Score=136.87 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=76.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCC-CeEEEEecCccEEEEEecCCCccccee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~-~~La~g~~dG~V~i~~~~~~~~~~~~~ 575 (1043)
.+.|++ |.+||||.-.... .|+..++ .+...|++++|||-- ..+|+++.+|.+.|||+......
T Consensus 413 ~fls~g-DW~vriWs~~~~~-~Pl~~~~---------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---- 477 (555)
T KOG1587|consen 413 NFLSVG-DWTVRIWSEDVIA-SPLLSLD---------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---- 477 (555)
T ss_pred eeeeec-cceeEeccccCCC-Ccchhhh---------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC----
Confidence 455555 9999999866322 2444443 233469999999975 46789999999999999765322
Q ss_pred eeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001621 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 576 f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~ 634 (1043)
+...+ ..+....+.+.|+++|+.||+|...|++.+|++..
T Consensus 478 -----------------Pv~s~--~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 -----------------PVLSQ--KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -----------------Ccccc--cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 11111 33466778899999999999999999999999963
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.35 E-value=2.4e-11 Score=136.18 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=121.3
Q ss_pred EecCCCEEEE--EECCCcEEEEECCCC-ce----eEEeecCCCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCCeEee
Q 001621 84 FLQNQGFLIS--ITNDNEIQVWSLESR-SL----ACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1043)
Q Consensus 84 Fs~d~~~Lvs--~s~d~~I~vWdl~t~-~~----l~~~~~~~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~~l~~ 155 (1043)
|+.++.+++. .+..|.|-|++++.. ++ +..+.....|+.++++|- ...|+++++||.|++|.+......-.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~- 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN- 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-
Confidence 5556544433 345789999999863 32 344455678999999984 56899999999999999876432111
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCC
Q 001621 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1043)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1043)
...| .+....|...|.+|.|||-. .+.|++++.|.+|.|||+..++....+.+
T Consensus 666 --~~tP-------e~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~~~~l~g----------------- 718 (1012)
T KOG1445|consen 666 --EMTP-------EKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKLYSRLVG----------------- 718 (1012)
T ss_pred --cCCc-------ceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhhhheecc-----------------
Confidence 0001 01123577889999999984 55689999999999999999887766644
Q ss_pred CCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCc
Q 001621 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
|...|.+++|+ |+|+.++|.+.||+|++++..++..
T Consensus 719 ------------HtdqIf~~AWS-pdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 719 ------------HTDQIFGIAWS-PDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred ------------CcCceeEEEEC-CCCcceeeeecCceEEEeCCCCCCC
Confidence 37889999996 9999999999999999999887653
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.4e-11 Score=133.86 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=110.6
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
++..++..++||+.||++|||+...-. .+.. ...|...|.+|+||||++.||+-+.| ..+||+..++.
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~--t~l~---------e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSML--TILE---------EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcch--hhhh---------hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 799999999999999999999965433 1111 13577899999999999999999999 89999998762
Q ss_pred c------------ccceeeeccCCCc-eeeecC---CCcc--------------eeeEEecCCCCCEEEEEEcCCCcEEE
Q 001621 570 D------------AKNFLFVLETKSE-VHALPE---GKIS--------------LCRAVFSLVNSPVRALQFTSSGAKLA 619 (1043)
Q Consensus 570 ~------------~~~~~f~~~~~~~-~~~~~~---~~~~--------------~~~~~l~~h~~~Vt~la~s~dg~~lA 619 (1043)
. ...|+|..++.++ +..... +++. +...... -...|++++.|+||+++|
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLA 297 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEE
Confidence 1 1234555433222 111111 1111 1111111 123699999999999999
Q ss_pred EEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeec
Q 001621 620 VGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1043)
Q Consensus 620 ~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~ 660 (1043)
+|+.||.|.|++..+.+.++.. ...|..-||.+.|+|+.
T Consensus 298 lGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDS 336 (398)
T ss_pred EeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCc
Confidence 9999999999999988877543 23367789999998643
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.34 E-value=4.1e-10 Score=118.08 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=129.1
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCC-ceeeee-eccceeeEEecCCCCCeEEEEEecCC-CeEEEEecCccEEEEEec
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICA-LDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~-l~~l~~-l~~~~~~v~~~~~~~~V~~l~fspd~-~~La~g~~dG~V~i~~~~ 566 (1043)
.|+|||..|++|. ..+||++|...+- ..+.+. +...- -+..+-|.+++|+|-. +++|+|+-...+-||...
T Consensus 165 ~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k-----~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 165 QFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK-----FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred EecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc-----ccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 7999999999887 6899999996543 111111 10000 1234578999999965 489999999999999876
Q ss_pred CCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeC-CCeEEEEEcCCceE-EEEeecC
Q 001621 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE-CGRVAVLDMNLLSV-LFFTDDI 644 (1043)
Q Consensus 567 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~-dg~V~vwD~~~~~~-l~~~~~~ 644 (1043)
.... ..++-+|.+.||-|+|+++|..|.+|+. |-.|-.||++.-+- ++.+.-
T Consensus 239 ~~~p-------------------------l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r- 292 (406)
T KOG2919|consen 239 GRRP-------------------------LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER- 292 (406)
T ss_pred CCCc-------------------------eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh-
Confidence 5322 2456799999999999999999999985 77799999986433 333211
Q ss_pred CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC-CCeeecC-CCCcCCCceeEE--
Q 001621 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSS-PWHLKKKVIAIS-- 720 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~-g~~l~~~-~~~~~~~~~a~~-- 720 (1043)
....--++|-|.- ++.+++|++|..||.|.+||... |+.+... ..+.-.+.+++.
T Consensus 293 -hv~~TNQRI~FDl--------------------d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 293 -HVGDTNQRILFDL--------------------DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred -hccCccceEEEec--------------------CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 1223455777853 34468899999999999999887 7733322 222333333332
Q ss_pred EEEe---ccEEEEeeCc
Q 001621 721 MEVI---DSVRLYSRKS 734 (1043)
Q Consensus 721 ~~v~---~~irl~~~~~ 734 (1043)
|.++ ..-|+|.-++
T Consensus 352 mpilatssGqr~f~~~~ 368 (406)
T KOG2919|consen 352 MPILATSSGQRIFKYPK 368 (406)
T ss_pred cceeeeccCceeecCCC
Confidence 3332 4556665543
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.6e-11 Score=137.25 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=98.5
Q ss_pred CCCCccccCCCCcEEEEEeCCCcEEEEeCCCC------CceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC
Q 001621 484 SPVPITKCHSVDRVYLAGYHDGSVRIWDATYP------VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1043)
Q Consensus 484 ~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~------~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d 557 (1043)
+...+ .|++....|+|++.||++++|+++.. .++++++ +.+|.+||.|+++++++..+.+|+.|
T Consensus 296 ~ir~l-~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~t---------fraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 296 CIRAL-AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILT---------FRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred hhhhh-hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEE---------EecccCceEEEEecCCceEEEeeccC
Confidence 33344 68888999999999999999999432 2344443 45899999999999999999999999
Q ss_pred ccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001621 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS 636 (1043)
Q Consensus 558 G~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~ 636 (1043)
|+|+.|++-.+... +-+ -... .....+.+|+..|..+++|+.-..|++++.||||++|+.....
T Consensus 366 g~I~~w~~p~n~dp----~ds---~dp~--------vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDP----DDS---YDPS--------VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ceeeeeccCCCCCc----ccc---cCcc--------hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC
Confidence 99999998643211 000 0000 1113478999999999999999899999999999999986543
No 183
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.33 E-value=6.9e-11 Score=124.21 Aligned_cols=241 Identities=12% Similarity=0.107 Sum_probs=162.9
Q ss_pred CCCCCeEEEEEecCC----CeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEE
Q 001621 534 GSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRAL 609 (1043)
Q Consensus 534 ~~~~~V~~l~fspd~----~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~l 609 (1043)
+|...-..++|+-|. -+||+|+.-|.|||.|+..+.-. .-+.+|...|+.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-------------------------~~~~ghG~sINei 141 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-------------------------KNYRGHGGSINEI 141 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-------------------------cceeccCccchhh
Confidence 455667778887654 36899999999999999775321 2357999999999
Q ss_pred EEcCCC-cEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEe
Q 001621 610 QFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL 688 (1043)
Q Consensus 610 a~s~dg-~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~g 688 (1043)
.+.|+- ++|.+||.|.+|++|++++..++.-.--.++|...|.++.|+..+ .+++++
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----------------------d~i~Sc 199 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----------------------DRIASC 199 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----------------------Ceeecc
Confidence 999974 789999999999999999998875433345678899999997544 459999
Q ss_pred ccCceEEEEcCCCCCeee----cCCCCcCCCc---------------eeEE-EE----------Ee-----ccEEEEeeC
Q 001621 689 FKDAKISIVGGSSENMIS----SSPWHLKKKV---------------IAIS-ME----------VI-----DSVRLYSRK 733 (1043)
Q Consensus 689 t~dg~I~~~d~~~g~~l~----~~~~~~~~~~---------------~a~~-~~----------v~-----~~irl~~~~ 733 (1043)
..|-+|.+|+....++-. +.+..++..- ..+. -+ ++ +.|..|.+-
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPG 279 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecc
Confidence 999999999977533211 1122211111 1111 00 11 889999982
Q ss_pred cccCC-------CcceeeecccCCcceeEEeeee--cceeEEEEEEEeeCcEEEEeCCChhhhhhhcccceeeeeccCCC
Q 001621 734 SVIQG-------NNKTVQKVKHKNRCCWASTIEK--DEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANM 804 (1043)
Q Consensus 734 ~~~~g-------~~k~~~k~~~~~~~~~~~~~~~--~~~~~~Lv~~~~dG~i~i~slp~l~~~~~~~l~~~~~~~~~~~~ 804 (1043)
.+.+. ..-.+--..+..+-|-+.++.+ ++.+.+|+++.+.|+|-+|+|-.-+...+..+. ++-..--
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s~~~~t 355 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HSKSGST 355 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----eccccce
Confidence 11111 0000000122335555556655 789999999999999999999766655434332 2223344
Q ss_pred ceeeEec-CCcEEEEccceeEE
Q 001621 805 DKTISAD-NGQITLANGSEVAF 825 (1043)
Q Consensus 805 ~~~i~~s-dg~~~l~~g~e~~~ 825 (1043)
+|..|+| ||.+++..-++.++
T Consensus 356 VRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 356 VRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eeeeeecccCcEEEEEeCCCcE
Confidence 7789999 99988876666544
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=1.7e-09 Score=123.16 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=138.8
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEc-CCcEEEEcCC-Cce--EEEecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECC
Q 001621 32 YGIPATASILAFDHIQRLLAIATL-DGRIKVIGGD-GIE--GLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLE 106 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~-dG~I~v~~~~-~~~--~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~-d~~I~vWdl~ 106 (1043)
....+.+..++++|++++|++++. ++.|.+|+.+ ... ..-..+.......+.|+|++++|++++. ++.|.+||++
T Consensus 31 ~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 31 VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 334567888999999999887754 7899999875 222 2222233345678999999999988874 8999999997
Q ss_pred C-Cc---eeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEee---eceeecccccccccCCCCCCCCC
Q 001621 107 S-RS---LACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQ---LPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 107 t-~~---~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~---~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
+ +. .+..+.......+++++|+++++++... ++.|.||+++.. +.+.. ....++ ....
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~~~~~~~~~~~-------------~g~~ 176 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLVAQEPAEVTTV-------------EGAG 176 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-CcccccCCCceecC-------------CCCC
Confidence 4 32 3333333345677889999999987665 588999998752 22220 000111 1123
Q ss_pred eEEEEecCCCCCCEEEEEEC-CCeEEEEEccC--CeE--EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeE
Q 001621 179 VVGVLPHPNSSGNRVLIAYE-NALVILWDVSE--AQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~ 253 (1043)
...+.|+| +|++++++.+ ++.|.+||+.. ++. +..+.. .+ .. .. ......
T Consensus 177 p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--------~p---~~---~~---------~~~~~~ 231 (330)
T PRK11028 177 PRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--------MP---AD---FS---------DTRWAA 231 (330)
T ss_pred CceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--------CC---Cc---CC---------CCccce
Confidence 56789999 4887878776 89999999974 332 222210 00 00 00 022334
Q ss_pred EEEEecCCCCEEEEEEc-CCcEEEEcCCCC
Q 001621 254 ALCWASSSGSILAVGYI-DGDILLWNTSTT 282 (1043)
Q Consensus 254 sl~w~sp~g~~l~tg~~-DG~I~iWd~~tg 282 (1043)
.+.++ |+|++++++.. ++.|.+|++.+.
T Consensus 232 ~i~~~-pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 232 DIHIT-PDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eEEEC-CCCCEEEEecCCCCeEEEEEEeCC
Confidence 67785 99999999865 789999998643
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=2.9e-11 Score=135.32 Aligned_cols=230 Identities=18% Similarity=0.265 Sum_probs=168.7
Q ss_pred ccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC--------CceEEEecC-CCCCeEEEEEecCCCEEEEE
Q 001621 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD--------GIEGLLISP-SQLPYKNLEFLQNQGFLISI 94 (1043)
Q Consensus 24 ~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~--------~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~ 94 (1043)
++++...++ +...+.+++|.|....|++|+.||+|++|..+ .++.++++. |.+||.|+....++.+++++
T Consensus 284 w~ik~tl~s-~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 284 WNIKFTLRS-HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cceeeeeec-chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 556665554 55679999999999999999999999999872 245666664 67899999999999999999
Q ss_pred ECCCcEEEEECCCC----------ceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee------ec
Q 001621 95 TNDNEIQVWSLESR----------SLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ------LP 157 (1043)
Q Consensus 95 s~d~~I~vWdl~t~----------~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~------~~ 157 (1043)
+-||+|+.|++-.. .+..++.++ +.|+.+++++..+.|++.+.||+++.|.+......... .|
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 99999999976422 233455554 78999999999999999999999999997643321000 00
Q ss_pred eeec---cc-------------cc------c-----cccCCCC-CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccC
Q 001621 158 YNIS---AD-------------AL------S-----EKAGFPL-LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1043)
Q Consensus 158 ~~i~---~~-------------~~------~-----~~~~~~~-~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~ 209 (1043)
..+. +. .+ + +....+. .....+.-|.++|. +.+.+++.+|+.|+++|..+
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC--CCeeEecccCCceecccccc
Confidence 0000 00 00 0 0000111 12345777888886 45688999999999999999
Q ss_pred CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
++++..... |...++++++. |+|.+|++|+.||.+++|.+....+..
T Consensus 521 ~~~l~s~~a-----------------------------~~~svtslai~-~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 521 GKILHSMVA-----------------------------HKDSVTSLAID-PNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cccchheee-----------------------------ccceecceeec-CCCceEEeecCCceeehhhccchheee
Confidence 988754321 36779999997 999999999999999999987665543
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.31 E-value=1.3e-09 Score=123.23 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=145.4
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
..||...|.|+||+.+|+++|+|+.|..|-||..+ .|.++...|...|.++.|.|=...|++++- +..-+|..+.+.
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~- 125 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS- 125 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-
Confidence 46899999999999999999999999999999753 466777788899999999997677877763 445689876553
Q ss_pred eEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 111 l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
+...+....|.++++..||.+++.|..||+|.+-+-..+.. -+|. .|.+..++|.+++|+|.. |
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek------~~I~---------Rpgg~Nspiwsi~~~p~s-g 189 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK------VKIE---------RPGGSNSPIWSICWNPSS-G 189 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc------eEEe---------CCCCCCCCceEEEecCCC-C
Confidence 33344457899999999999999999999998764333211 1111 245678999999999962 2
Q ss_pred ----CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 191 ----NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 191 ----~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
..+++...+.++.+|.+.. +.+..- + . -.-...|+.+. ++|.+++
T Consensus 190 ~G~~di~aV~DW~qTLSFy~LsG-~~Igk~--r--~-------------------------L~FdP~CisYf-~NGEy~L 238 (1081)
T KOG1538|consen 190 EGRNDILAVADWGQTLSFYQLSG-KQIGKD--R--A-------------------------LNFDPCCISYF-TNGEYIL 238 (1081)
T ss_pred CCccceEEEEeccceeEEEEecc-eeeccc--c--c-------------------------CCCCchhheec-cCCcEEE
Confidence 1255555566666666542 222100 0 0 02235688885 9999999
Q ss_pred EEEcCCcEEEEcC
Q 001621 267 VGYIDGDILLWNT 279 (1043)
Q Consensus 267 tg~~DG~I~iWd~ 279 (1043)
.|+.|+.+.++.-
T Consensus 239 iGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTR 251 (1081)
T ss_pred EccCCCceEEEee
Confidence 9999999999864
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.1e-10 Score=112.07 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=116.9
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCC----------ceeEEee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEe
Q 001621 79 YKNLEFLQNQGFLISITNDNEIQVWSLESR----------SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1043)
Q Consensus 79 V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~----------~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d 147 (1043)
|-.-+++|-+++|++++.+|+|.+..+.+- ..+...+ ++++|+.++|. .++|++|. ||.|+-|.+.
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 334467888899999999999999998652 1233323 45899999997 45566655 4999999987
Q ss_pred CCCCeEe-eeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccc
Q 001621 148 ADEGKLF-QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1043)
Q Consensus 148 ~~~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~ 226 (1043)
....... ..-+++........ ..-..|.++...|. ++. ++.++.|+.+.-||+++|+....+.+
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~-----~evPeINam~ldP~-enS-i~~AgGD~~~y~~dlE~G~i~r~~rG-------- 154 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDA-----VEVPEINAMWLDPS-ENS-ILFAGGDGVIYQVDLEDGRIQREYRG-------- 154 (325)
T ss_pred hhhhhccchhhhhhcCccccCc-----ccCCccceeEeccC-CCc-EEEecCCeEEEEEEecCCEEEEEEcC--------
Confidence 5432111 00011100000001 12346889999997 455 67777999999999999999888755
Q ss_pred cccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCcccc
Q 001621 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 287 (1043)
Q Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~ 287 (1043)
|..-|.++.-. .....|++|++||++|+||..+++..+.
T Consensus 155 ---------------------HtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 155 ---------------------HTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ---------------------Ccceeeeeeec-ccCcceeecCCCccEEEEeccccceeEE
Confidence 36778888763 4456789999999999999999886653
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.28 E-value=1.6e-10 Score=124.12 Aligned_cols=210 Identities=13% Similarity=0.172 Sum_probs=144.5
Q ss_pred ccceeeecccCCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCCceE-------EEec-CCCCCeEEEEEecC-CCEEEE
Q 001621 24 LNLRIAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEG-------LLIS-PSQLPYKNLEFLQN-QGFLIS 93 (1043)
Q Consensus 24 ~~~~~~~~~G~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~~~~-------~~~~-~~~~~V~~l~Fs~d-~~~Lvs 93 (1043)
++.....-.||.+.|..++|+| +...+|+|+.|.+|.||.....-. +..+ .|...|-.++|.|- ...|++
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence 3444556689999999999999 567999999999999998753322 2222 24567888899883 357999
Q ss_pred EECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCC
Q 001621 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1043)
Q Consensus 94 ~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1043)
++.|++|.+||+.||+.+-++.++..|+++.|+.+|.++++++.|..||||+... +++.. +..+ .
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~--~~~v~-----------e~~~--h 214 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR--GTVVS-----------EGVA--H 214 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCC--CcEee-----------eccc--c
Confidence 9999999999999999999999889999999999999999999999999986433 43331 1000 0
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEEC---CCeEEEEEccCCeE---EEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~---dg~I~lWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
....+...|-. - +|..+-+|+. +..+.|||-..-.. ...+.
T Consensus 215 eG~k~~Raifl-~--~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD------------------------------ 261 (472)
T KOG0303|consen 215 EGAKPARAIFL-A--SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD------------------------------ 261 (472)
T ss_pred cCCCcceeEEe-c--cCceeeeccccccccceeccCcccccCcceeEEec------------------------------
Confidence 11122333322 2 3663334443 45788998654221 11111
Q ss_pred CCCCeEEEEEecCCCCEEE-EEEcCCcEEEEcCCCC
Q 001621 248 EEKEISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~-tg~~DG~I~iWd~~tg 282 (1043)
-...|.==.|. +|.+.|. +|-.|+.|+.+.+.+.
T Consensus 262 tSnGvl~PFyD-~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 262 TSNGVLLPFYD-PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCCceEEeeec-CCCCEEEEEecCCcceEEEEecCC
Confidence 02334444465 8887765 5557999999998654
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.27 E-value=1.3e-10 Score=124.66 Aligned_cols=203 Identities=12% Similarity=0.135 Sum_probs=144.2
Q ss_pred ecCCCCCeEEEEEecC-CCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEE
Q 001621 532 VAGSRAPVSTLSFCFI-NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 610 (1043)
Q Consensus 532 ~~~~~~~V~~l~fspd-~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la 610 (1043)
+.||+++|..++|+|. ...+|+|++|.+|.||++-.+..... -..+...|.+|+..|--|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------cccceEEEeecceeEEEEe
Confidence 3599999999999996 55789999999999999865431111 1123456899999999999
Q ss_pred EcCCC-cEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEec
Q 001621 611 FTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1043)
Q Consensus 611 ~s~dg-~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt 689 (1043)
|+|.. ..|++++.|.+|.+||+.++..+.+.. |+.-|.++.|+.+ +..|++++
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~d----------------------Gs~l~Ttc 192 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRD----------------------GSLLCTTC 192 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccC----------------------Cceeeeec
Confidence 99975 578999999999999999998876642 6788999999654 45699999
Q ss_pred cCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEe--------------ccEEEEeeCcccCCCcceeeecccC-Cccee
Q 001621 690 KDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI--------------DSVRLYSRKSVIQGNNKTVQKVKHK-NRCCW 754 (1043)
Q Consensus 690 ~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~--------------~~irl~~~~~~~~g~~k~~~k~~~~-~~~~~ 754 (1043)
.|..|+|||..+|++++.. +..+.....-+.++- ..+-||++.++..+... ..++ +.-.-
T Consensus 193 kDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----~elDtSnGvl 267 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL----QELDTSNGVL 267 (472)
T ss_pred ccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee----EEeccCCceE
Confidence 9999999999999999877 333332222222221 45667777664332111 1122 22222
Q ss_pred EEeeeecceeEEEEEEEeeCcEEEEeCCCh
Q 001621 755 ASTIEKDEKVCGLLLLFQTGAVQIRSLPDL 784 (1043)
Q Consensus 755 ~~~~~~~~~~~~Lv~~~~dG~i~i~slp~l 784 (1043)
.+ |+.......-+||=.||.||-|.+-+-
T Consensus 268 ~P-FyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 268 LP-FYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred Ee-eecCCCCEEEEEecCCcceEEEEecCC
Confidence 23 333334555678889999999998443
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=8.7e-10 Score=125.57 Aligned_cols=208 Identities=14% Similarity=0.182 Sum_probs=136.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEc-CCcEEEEcCCC-c---eEEEecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 001621 34 IPATASILAFDHIQRLLAIATL-DGRIKVIGGDG-I---EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~-dG~I~v~~~~~-~---~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s-~d~~I~vWdl~t 107 (1043)
.++.+..++|+|++++|++++. +|.|.+|+.+. . +.+...++......++|+|++++|++++ .++.|.+||+.+
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 3446788999999998888775 79999998742 1 2222233334466788999999887666 569999999987
Q ss_pred CceeE-------EeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCC--CCCC
Q 001621 108 RSLAC-------CLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL--LSHQ 177 (1043)
Q Consensus 108 ~~~l~-------~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~--~~~~ 177 (1043)
...+. ..........++|+|+++++|+..+ +++|.+|+++...+++.. -..+.. .+. .+..
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~-~~~~~~--------~p~~~~~~~ 228 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC-VQTLDM--------MPADFSDTR 228 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE-EEEEec--------CCCcCCCCc
Confidence 43221 1222345678999999999999987 889999999854333321 011110 011 0112
Q ss_pred CeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 178 PVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
....+.++|+ |++++++.+ ++.|.+|++.+.. .....+ +.+ . ......+
T Consensus 229 ~~~~i~~~pd--g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~--------~~~---~----------------~~~p~~~ 279 (330)
T PRK11028 229 WAADIHITPD--GRHLYACDRTASLISVFSVSEDGSVLSFEG--------HQP---T----------------ETQPRGF 279 (330)
T ss_pred cceeEEECCC--CCEEEEecCCCCeEEEEEEeCCCCeEEEeE--------EEe---c----------------cccCCce
Confidence 2346889994 887888754 6799999996543 221111 111 0 1123356
Q ss_pred EEecCCCCEEEEEEc-CCcEEEEcCC
Q 001621 256 CWASSSGSILAVGYI-DGDILLWNTS 280 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~-DG~I~iWd~~ 280 (1043)
.++ |+|++|+++.. +++|.+|++.
T Consensus 280 ~~~-~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 280 NID-HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEC-CCCCEEEEEEccCCcEEEEEEc
Confidence 785 99999998886 8999999874
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.26 E-value=5.3e-10 Score=131.57 Aligned_cols=209 Identities=17% Similarity=0.219 Sum_probs=142.9
Q ss_pred ccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCceE-------EEecCCCCCeEEEEEecCCCE--EEEEECCCcEE
Q 001621 32 YGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEG-------LLISPSQLPYKNLEFLQNQGF--LISITNDNEIQ 101 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~~-------~~~~~~~~~V~~l~Fs~d~~~--Lvs~s~d~~I~ 101 (1043)
+-.++.|+|++|+|. ..+||.|+.+|+|.+||...... .....|..+|..+.|..+..- +++++.||.|.
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 345778999999995 68999999999999999765443 133456789999999886554 99999999999
Q ss_pred EEECCCCce-eE-----Ee-------ecCCCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCeEee-eceeecccccc
Q 001621 102 VWSLESRSL-AC-----CL-------KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALS 166 (1043)
Q Consensus 102 vWdl~t~~~-l~-----~~-------~~~~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~l~~-~~~~i~~~~~~ 166 (1043)
.|+++--.. +. .. .....+++++|.+... .+++|++.|.|.. -.-....... ..|...
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~--~~r~g~~~~~~~~~~~~----- 391 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK--GCRKGYTPAPEVSYKGH----- 391 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE--EeccCCccccccccccc-----
Confidence 998765322 11 11 1124789999988754 5789999997633 1110000000 001111
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEcc-CCeEEEEeCCcccccccccccCCCCCCCCcccCccCC
Q 001621 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1043)
Q Consensus 167 ~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (1043)
.....|.++|.++.++|. +..+..+..|.+|+||+-. ...++..+..
T Consensus 392 ---~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--------------------------- 439 (555)
T KOG1587|consen 392 ---STFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDS--------------------------- 439 (555)
T ss_pred ---ccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhh---------------------------
Confidence 112457899999999997 4334444449999999976 4444433221
Q ss_pred CCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEcCCCC
Q 001621 246 QPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 246 ~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg 282 (1043)
+...|++++|+ |.. ..++++..||.|.+||+...
T Consensus 440 --~~~~v~~vaWS-ptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 440 --SPDYVTDVAWS-PTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --ccceeeeeEEc-CcCceEEEEEcCCCceehhhhhcc
Confidence 14559999996 776 56888888999999999653
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.24 E-value=2.2e-09 Score=129.52 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=140.8
Q ss_pred cccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCceE-------EEec-CCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001621 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEG-------LLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~~-------~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
.+-|.+.+..+|.++. +.++++|+.||+||||+....+. .++. +...++.++.+.+++.+++.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 3667777888888665 49999999999999999542211 1222 2567899999999999999999999999
Q ss_pred EEECCC--Cc-eeEEe------ecCCCEEEE-EEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccccc
Q 001621 102 VWSLES--RS-LACCL------KWESNITAF-SVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1043)
Q Consensus 102 vWdl~t--~~-~l~~~------~~~~~Vtav-~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1043)
+.+++. .+ .+.+. ..++.+..+ ++... ...++.++..+.|-.|+...... .+++..
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-----~w~lk~------- 1191 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-----AWRLKN------- 1191 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-----HHhhhc-------
Confidence 999876 21 11111 123444444 33222 23677788888777776543211 122221
Q ss_pred CCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCC
Q 001621 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1043)
Q Consensus 170 ~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (1043)
....+.|++++.+|. ++++++|...|.+.+||++=+..+....+ | + .
T Consensus 1192 ---~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~~~i~sw~~---------P---~----------------~ 1238 (1431)
T KOG1240|consen 1192 ---QLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFRVPILSWEH---------P---A----------------R 1238 (1431)
T ss_pred ---CccccceeEEEecCC--ceEEEEecCCceEEEEEeecCceeecccC---------c---c----------------c
Confidence 124678999999995 88999999999999999998888776643 1 1 2
Q ss_pred CCeEE--EEEecCCCCEEEEEE--cCCcEEEEcCCCCCccc
Q 001621 250 KEISA--LCWASSSGSILAVGY--IDGDILLWNTSTTASTK 286 (1043)
Q Consensus 250 ~~V~s--l~w~sp~g~~l~tg~--~DG~I~iWd~~tg~~~~ 286 (1043)
.+|.- +|...|....+++++ ..+.|.+|++.+|.+..
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 23333 333324335555544 46789999999986543
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=7.7e-10 Score=118.41 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=113.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEE--EecCccEEEEEecCCCccc
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV--GNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~--g~~dG~V~i~~~~~~~~~~ 572 (1043)
++.|+..=++ .|.|+|+++- +++++++.. ..+...+.++++++.+.+||- ....|.|+|||...-+
T Consensus 97 r~RLvV~Lee-~IyIydI~~M--klLhTI~t~------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--- 164 (391)
T KOG2110|consen 97 RKRLVVCLEE-SIYIYDIKDM--KLLHTIETT------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--- 164 (391)
T ss_pred cceEEEEEcc-cEEEEecccc--eeehhhhcc------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---
Confidence 3456666544 4999999864 466666521 123345777777777779885 3457999999986532
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCe-EEEEEcCCceEEEEeecCCCCCCCe
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR-VAVLDMNLLSVLFFTDDISGSSSPI 651 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~-V~vwD~~~~~~l~~~~~~~~~~~~V 651 (1043)
+...+..|.+++-||||+++|.+||++|+.|| |||+.+.+++.++...- .-....|
T Consensus 165 ----------------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-G~~~~~I 221 (391)
T KOG2110|consen 165 ----------------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-GTYPVSI 221 (391)
T ss_pred ----------------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-CceeeEE
Confidence 22456899999999999999999999999999 78999999999877432 1145679
Q ss_pred EEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 652 ~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
.+|+|+++ +.+|.+.++.++|.+|..+.-
T Consensus 222 ySL~Fs~d----------------------s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 222 YSLSFSPD----------------------SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEECCC----------------------CCeEEEecCCCeEEEEEeccc
Confidence 99999754 467999999999999986553
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=7.1e-10 Score=130.75 Aligned_cols=194 Identities=9% Similarity=0.031 Sum_probs=131.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEE-CCCcEEE--EECC
Q 001621 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQV--WSLE 106 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s-~d~~I~v--Wdl~ 106 (1043)
++...+...+|+|+|+.||..+.+ ..|++|+..+.+.............++|+||+.+|+.+. .+|.+.| ||+.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 445568999999999999988754 369999987654322222223344789999998888765 5776555 5777
Q ss_pred CCceeEEeecCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 107 t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+++..........+++..|+|+|++|+..+ .+|..+||.++...+.... +. +.. .+..|+
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l~-------------~~~--~~~~~S 341 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----VG-------------GRG--YSAQIS 341 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----ec-------------CCC--CCccCC
Confidence 776544333446788999999999876554 5788999998875432221 10 111 346799
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
|+ |+.++.++.++. .+||+.+++....... ....+..|+ |||.+|
T Consensus 342 pD--G~~ia~~~~~~i-~~~Dl~~g~~~~lt~~-------------------------------~~~~~~~~s-PdG~~i 386 (429)
T PRK01742 342 AD--GKTLVMINGDNV-VKQDLTSGSTEVLSST-------------------------------FLDESPSIS-PNGIMI 386 (429)
T ss_pred CC--CCEEEEEcCCCE-EEEECCCCCeEEecCC-------------------------------CCCCCceEC-CCCCEE
Confidence 94 877877777665 5699988865432110 011345686 999999
Q ss_pred EEEEcCCcEEEEcCC
Q 001621 266 AVGYIDGDILLWNTS 280 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~ 280 (1043)
+.++.+|.+.+|.+.
T Consensus 387 ~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 387 IYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999998888763
No 195
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.21 E-value=5.4e-06 Score=105.17 Aligned_cols=234 Identities=16% Similarity=0.180 Sum_probs=136.7
Q ss_pred CeEEEEEcCCCCEEEEEEc--CC--cEEEEc--CCC-ceEEEecC------CCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001621 37 TASILAFDHIQRLLAIATL--DG--RIKVIG--GDG-IEGLLISP------SQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~--dG--~I~v~~--~~~-~~~~~~~~------~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vW 103 (1043)
.+...+|++...-+.++.. .. .|.+-. ... .+.+...+ ....|..++|.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 5677788887654433333 22 333322 222 23333332 24689999999999999999999999999
Q ss_pred ----ECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeee-----------ceeeccc----c
Q 001621 104 ----SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-----------PYNISAD----A 164 (1043)
Q Consensus 104 ----dl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~-----------~~~i~~~----~ 164 (1043)
|..+...-..=..+..|.|+++|||.+.+++.+.+|++-+..-+-+ .+... +-.+.|- .
T Consensus 103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd--~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD--PISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce--EEEEeecCccccCCCceeeeccCcccCc
Confidence 6555543322245688999999999999999999998765542211 11100 1111111 0
Q ss_pred cccccCC--------CC------C---CCCCeEEEEecCCCCCCEEEEEEC---C---CeEEEEEccCCeEEEEeCCccc
Q 001621 165 LSEKAGF--------PL------L---SHQPVVGVLPHPNSSGNRVLIAYE---N---ALVILWDVSEAQIIFVGGGKDL 221 (1043)
Q Consensus 165 ~~~~~~~--------~~------~---~~~~V~sl~~sp~d~g~~ll~~~~---d---g~I~lWd~~~~~~~~~~~~~~~ 221 (1043)
+++..|- |. + ....-..|+|.. ||.++++.+- . ..++||+- +|.+...-+.
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~--- 254 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEP--- 254 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECC-CceEEecccc---
Confidence 1111000 00 0 223456788877 6998888764 3 37889984 4655433211
Q ss_pred ccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc---CCcEEEEcCCCCCccccccCCCCCccee
Q 001621 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTSTTASTKGQQTGSRNNVVK 298 (1043)
Q Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~---DG~I~iWd~~tg~~~~~~~~~~~~~i~~ 298 (1043)
. .+--.+++|. |.|+.||+... .-.|.||.-+.-+. ..
T Consensus 255 ------v--------------------~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLrh------------ge 295 (928)
T PF04762_consen 255 ------V--------------------DGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLRH------------GE 295 (928)
T ss_pred ------C--------------------CCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcEe------------ee
Confidence 0 2223468996 99999998875 45688887543211 11
Q ss_pred eecccccCCcceEEEEeec
Q 001621 299 LELSSAERRLPVIVLHWST 317 (1043)
Q Consensus 299 l~~~~~~~~~~i~~l~w~~ 317 (1043)
+.+.-......|..+.|++
T Consensus 296 F~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EecCCCCCCceeeEEEECC
Confidence 1222112345788999965
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.20 E-value=1.9e-09 Score=111.73 Aligned_cols=234 Identities=13% Similarity=0.207 Sum_probs=158.2
Q ss_pred eeecccCCCCeEEEEEcCCC-----CEEEEEEcCCcEEEEcCCC--c--eEE--Ee----cCCCCCeEEEEEec-CCCEE
Q 001621 28 IAVHYGIPATASILAFDHIQ-----RLLAIATLDGRIKVIGGDG--I--EGL--LI----SPSQLPYKNLEFLQ-NQGFL 91 (1043)
Q Consensus 28 ~~~~~G~~~~v~~lafsp~g-----~lLAvgt~dG~I~v~~~~~--~--~~~--~~----~~~~~~V~~l~Fs~-d~~~L 91 (1043)
....+.|+..++.+-|.|++ .+||+.+ -.+|+|.... . +.. +. .+..+++++..|.. +-.++
T Consensus 89 ~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 89 EDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred ccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCccee
Confidence 33446899999999999987 4777654 4899998652 1 111 11 12346899998876 55678
Q ss_pred EEEECCCcEEEEECCCCce--e--EEeecCCCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccc
Q 001621 92 ISITNDNEIQVWSLESRSL--A--CCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1043)
Q Consensus 92 vs~s~d~~I~vWdl~t~~~--l--~~~~~~~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~ 166 (1043)
.+.+-|-+..|||++++.. + .-+.+...|..++|.-++. .+++.+.||+||++++...+..-+ -|.-+
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI--IYE~p----- 239 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI--IYEDP----- 239 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE--EecCC-----
Confidence 8888999999999999843 2 3345668999999998654 677888999999998865322111 12211
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCe-EEEEeCCcccccccccccCCCCCCCCcccCccC
Q 001621 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1043)
Q Consensus 167 ~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 244 (1043)
....+...|+|++.| .+++++-.. ...|.+-|++... ++..+..
T Consensus 240 -------~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~-------------------------- 285 (364)
T KOG0290|consen 240 -------SPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRN-------------------------- 285 (364)
T ss_pred -------CCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhc--------------------------
Confidence 225688999999984 555665443 4578889987643 3333322
Q ss_pred CCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeec
Q 001621 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST 317 (1043)
Q Consensus 245 ~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~ 317 (1043)
|...|..++|+.....+|+|++.|....+||+...-.. ....|+. .+. ....|..++|+.
T Consensus 286 ---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPil----ay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 286 ---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPIL----AYT-AGGEVNQIQWSS 345 (364)
T ss_pred ---CcccccceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCchh----hhh-ccceeeeeeecc
Confidence 47889999998334678999999999999999764320 1122332 222 234678888864
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=114.64 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=102.4
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEee-cC
Q 001621 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLK-WE 117 (1043)
Q Consensus 40 ~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~-s~d~~I~vWdl~t~~~l~~~~-~~ 117 (1043)
-+.|+|+|+++|+.+.- ++.|-|....+....+..-..|..|.|..|..+++.+ ..|+.|++|++...+-...+. .+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 36799999999999866 7777777665543333334678899999998777665 567899999999988888875 55
Q ss_pred CCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 118 SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
..+.++.++|+|+.++..++ +-.|.||.+....+ |.++. + ..-+..++|+| +|++.++.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~---------p---K~~~kg~~f~~--dg~f~ai~ 151 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPH---------P---KTNVKGYAFHP--DGQFCAIL 151 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEecccee------EEecc---------c---ccCceeEEECC--CCceeeee
Confidence 78999999999977666555 56688898877543 33331 1 12357899999 49877776
Q ss_pred ECC
Q 001621 197 YEN 199 (1043)
Q Consensus 197 ~~d 199 (1043)
.+.
T Consensus 152 sRr 154 (447)
T KOG4497|consen 152 SRR 154 (447)
T ss_pred ecc
Confidence 653
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.6e-09 Score=105.73 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=147.1
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
+++|.+++|++|..+|+|-+..+++-.-.. ..-+.+..-+...+|.++|..|+|.. .+|++|+. |.|+=|.++...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~s-a~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGS-AEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccc-cCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeeehhhh
Confidence 578899999999999999999876432100 00011111122358999999999983 35666655 999999997643
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~ 649 (1043)
.... .+++..+.. +..+-...-..|++|-..|....+..++.|+.+.-||++++++..... +|+.
T Consensus 93 es~~-------~K~lwe~~~-----P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GHtD 157 (325)
T KOG0649|consen 93 ESLA-------TKRLWEVKI-----PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---GHTD 157 (325)
T ss_pred hhcc-------chhhhhhcC-----ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---CCcc
Confidence 2100 111111110 001001122468999999988788888899999999999999865432 3678
Q ss_pred CeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCC-------CCcCCCceeEEEE
Q 001621 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP-------WHLKKKVIAISME 722 (1043)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~-------~~~~~~~~a~~~~ 722 (1043)
+|-+++-..... -+++|++||++++||..+++.++... ..|+.++-.-+.-
T Consensus 158 YvH~vv~R~~~~----------------------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 158 YVHSVVGRNANG----------------------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred eeeeeeecccCc----------------------ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 888888753221 18999999999999999998776552 3344443222211
Q ss_pred Ee---------ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCC
Q 001621 723 VI---------DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 782 (1043)
Q Consensus 723 v~---------~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp 782 (1043)
+. ..+-||++.+ +..+.--++..+.....+ ...+++.+++-..|.-|.+.
T Consensus 216 ~~edWlvCGgGp~lslwhLrs-----se~t~vfpipa~v~~v~F-----~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 216 VNEDWLVCGGGPKLSLWHLRS-----SESTCVFPIPARVHLVDF-----VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCceEEecCCCceeEEeccC-----CCceEEEecccceeEeee-----ecceEEEeccccceeeeeec
Confidence 11 5677787754 222222333333333322 12345556655566666663
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.16 E-value=1.3e-09 Score=120.81 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=69.8
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
.+++..++++||++|-..+|||..... ++. -..|..||++|+|.|+ +.+++++.. +.| +.
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G~~---Lf~---------S~~~ey~ITSva~npd-~~~~v~S~n-t~R---~~--- 252 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQGAN---LFT---------SAAEEYAITSVAFNPE-KDYLLWSYN-TAR---FS--- 252 (737)
T ss_pred ecCccccceeecCCceeEEeecccCcc---ccc---------CChhccceeeeeeccc-cceeeeeee-eee---ec---
Confidence 455667899999999999999987654 221 1356679999999999 666655542 222 11
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.+..+.|..|+||+||..+|.|+..|.|.+=-+
T Consensus 253 ------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 253 ------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 345678999999999999999999999876444
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.15 E-value=7.2e-11 Score=136.51 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=162.8
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~ 110 (1043)
.||-..|.|++||..|.++.+|+.|..|+||..++.+++...+ |.+.|+.++.+.+..++++++.|..|++|-+.++.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 4777889999999999999999999999999998888877665 457899999999888899999999999999999999
Q ss_pred eEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee--------------------ec------------
Q 001621 111 ACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ--------------------LP------------ 157 (1043)
Q Consensus 111 l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~--------------------~~------------ 157 (1043)
+..+..+ +.||+++|+|-. +.+.||++++|+++.+...... +.
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 9999866 899999999965 6678999999998722111110 00
Q ss_pred eeec---------------------------------ccccccc-cCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEE
Q 001621 158 YNIS---------------------------------ADALSEK-AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1043)
Q Consensus 158 ~~i~---------------------------------~~~~~~~-~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~ 203 (1043)
|.++ ++..... .....+|...+..+.+||.+ .....+++.||...
T Consensus 343 ~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn-~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 343 HEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN-PRIAMSAGYDGSTI 421 (1113)
T ss_pred chhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC-cHhhhhccCCCceE
Confidence 0000 0000000 00123467788889999983 44467788899999
Q ss_pred EEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 204 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
|||+-.+..+++..- + ...+..-.|+ ++|..++....-|.+.|.....++
T Consensus 422 iwdi~eg~pik~y~~---------g--------------------h~kl~d~kFS-qdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHYFI---------G--------------------HGKLVDGKFS-QDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeecccCCcceeeec---------c--------------------cceeeccccC-CCCceEecCCCCCceEEeccCCCc
Confidence 999999887765421 0 2334444685 999999998888999998775554
Q ss_pred c
Q 001621 284 S 284 (1043)
Q Consensus 284 ~ 284 (1043)
.
T Consensus 472 s 472 (1113)
T KOG0644|consen 472 S 472 (1113)
T ss_pred c
Confidence 3
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=5.7e-09 Score=111.23 Aligned_cols=208 Identities=15% Similarity=0.188 Sum_probs=138.3
Q ss_pred CCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCc----e----------EEEecCCCCCeEEEEEecCCCEEEEEE-CCC
Q 001621 35 PATASILAFDHI-QRLLAIATLDGRIKVIGGDGI----E----------GLLISPSQLPYKNLEFLQNQGFLISIT-NDN 98 (1043)
Q Consensus 35 ~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~----~----------~~~~~~~~~~V~~l~Fs~d~~~Lvs~s-~d~ 98 (1043)
...|+|+||-|. ++-||+|...| |.+|..+.. . -++..+++.+|++++|.+|+..|++++ .|.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 446999999996 47899999765 889964321 1 123445568999999999999999998 467
Q ss_pred cEEEEECCCCceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCC
Q 001621 99 EIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1043)
.|.|||..++..+.-. ...+.++-+.++||+++++.++-|+..+||+....- .+-++ . -..+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-------t~erw--~--------lgsg 281 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-------TKERW--I--------LGSG 281 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc-------eecce--e--------ccCC
Confidence 8999999999877665 455889999999999999999999999999643210 01111 0 1234
Q ss_pred CeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCC---cccccccccccCCCCCCCCcccCccCCCCCCCCeE
Q 001621 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGG---KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~ 253 (1043)
.|..-.|+|+ |++||.+..... +||.+.-.. .....+. +...+--.++ .-..-.|.++ --.++.
T Consensus 282 rvqtacWspc--GsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~----e~ti~ag~~l-----~cgeaq 349 (445)
T KOG2139|consen 282 RVQTACWSPC--GSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQ----EVTICAGQRL-----CCGEAQ 349 (445)
T ss_pred ceeeeeecCC--CCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccch----hhhhhcCccc-----ccCccc
Confidence 8999999995 888888776555 577764321 1100000 0000000000 0000001111 146788
Q ss_pred EEEEecCCCCEEEEEEcCCc
Q 001621 254 ALCWASSSGSILAVGYIDGD 273 (1043)
Q Consensus 254 sl~w~sp~g~~l~tg~~DG~ 273 (1043)
+++|. |.|.++++....+.
T Consensus 350 ~lawD-psGeyLav~fKg~~ 368 (445)
T KOG2139|consen 350 CLAWD-PSGEYLAVIFKGQS 368 (445)
T ss_pred eeeEC-CCCCEEEEEEcCCc
Confidence 99997 99999999887665
No 202
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.15 E-value=1.9e-09 Score=111.55 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=148.3
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceE-EEe------cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCC
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLI------SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~-~~~------~~~~~~V~~l~Fs~-d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
+.+.|+-|.|++.-||+-. |..|.+|+.+.... ... .+++...+.-+|+| ..+.-+.+..|++++.||++|
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 4789999999999888876 88999999754332 111 11244667778888 334556667899999999999
Q ss_pred CceeEEee-cC-CCEEEEEEeCCCC-EEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 108 RSLACCLK-WE-SNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 108 ~~~l~~~~-~~-~~Vtav~~sp~~~-~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
-+....+. .| ..|..+.|.|..+ +|+++++||.|++|+...-. +.+. ...+|...|.+|.|
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------~pv~---------el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------FPVQ---------ELPGHSHWVWAVRF 266 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------cccc---------ccCCCceEEEEEEe
Confidence 88877775 23 5799999999976 57788899999999865421 1110 11357788999999
Q ss_pred cCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC-CCCCCCcccCccCCCCCCCCeEEEEEecCCCC
Q 001621 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP-SEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~ 263 (1043)
+|. ...++|+|+.|..|.||....-..-..+...+-.-..+..+.. ...|-.+| .+-.=..|+..|.+++|++.+-.
T Consensus 267 n~~-hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg-~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 267 NPE-HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG-QLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred cCc-cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc-ccccccccccceEEEeeccCCCe
Confidence 997 3457899999999999987643211111110000000000000 00000111 01111235788999999988889
Q ss_pred EEEEEEcCCcEEEEcC
Q 001621 264 ILAVGYIDGDILLWNT 279 (1043)
Q Consensus 264 ~l~tg~~DG~I~iWd~ 279 (1043)
.+|+-+-||.+.|=.+
T Consensus 345 iFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSV 360 (370)
T ss_pred eEEEeccCceEEeecC
Confidence 9999999999987554
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.14 E-value=7.7e-10 Score=123.02 Aligned_cols=154 Identities=15% Similarity=0.265 Sum_probs=110.5
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCceEEEec-----CCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC---------
Q 001621 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLIS-----PSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESR--------- 108 (1043)
Q Consensus 44 sp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-----~~~~~V~~l~Fs~d~-~~Lvs~s~d~~I~vWdl~t~--------- 108 (1043)
.|.+--|.+|-..|.|.+.+....+....+ -.+..|+++.|.|.+ ..++++-.+|.+.++|.+--
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345666778888899998876443222111 125789999999955 44555568899999976321
Q ss_pred -------------------ceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccc
Q 001621 109 -------------------SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1043)
Q Consensus 109 -------------------~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1043)
.++..+ .+++.|..++|+|||++||+-++||.+||++++... +.
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Ll-------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LL-------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH--HH--------------
Confidence 011111 123678999999999999999999999999998731 11
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 169 ~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
+.-+.-.+...||+|+| ||+++++|++|-.|.||++.+.+++..-
T Consensus 326 -g~mkSYFGGLLCvcWSP--DGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 326 -GVMKSYFGGLLCVCWSP--DGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred -HHHHhhccceEEEEEcC--CccEEEecCCcceEEEEEeccceEEEec
Confidence 00011246789999999 5999999999999999999999988653
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.14 E-value=5.3e-09 Score=110.09 Aligned_cols=222 Identities=13% Similarity=0.143 Sum_probs=161.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce---EEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CCC
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESR 108 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~---~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl-~t~ 108 (1043)
....|+|-||+++...+|++.....|+||...+.. ...++ .|...|+.+.|.|...+|++++.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999999999999999999999865443 33333 35678999999999889999999999999999 444
Q ss_pred cee---EEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 109 SLA---CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 109 ~~l---~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+-. --++.....+++.++|..+.+++|+....|.||-|+.++. + |..+.++ +...+.|.++.||
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------W-----WVsKhik--kPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------W-----WVSKHIK--KPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------e-----ehhhhhC--Cccccceeeeecc
Confidence 432 3335678899999999999999999999999998876532 1 1223322 3456889999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccC-CCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS-PSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
|. +-+|++|+.|+.+++++.- ++..+ +.|.+ |=++....|.-.+.-......|..+.|+ |.|..
T Consensus 156 pn--nVLlaaGs~D~k~rVfSay----IK~Vd--------ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~ 220 (361)
T KOG1523|consen 156 PN--NVLLAAGSTDGKCRVFSAY----IKGVD--------EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNR 220 (361)
T ss_pred CC--cceecccccCcceeEEEEe----eeccc--------cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCE
Confidence 95 6667888899999999853 11111 11101 1111122221111111235789999996 99999
Q ss_pred EEEEEcCCcEEEEcCCCCC
Q 001621 265 LAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~tg~ 283 (1043)
|+-.+.|.++.+=|...+.
T Consensus 221 lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 221 LAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eeEecCCCceEEeecCCCc
Confidence 9999999999998876553
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=5.5e-10 Score=124.00 Aligned_cols=236 Identities=12% Similarity=0.106 Sum_probs=153.0
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEe--cCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECC
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~--~~~~~~V~~l~Fs~--d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
..||.+.|+||+|+.+|.+||+|+.|-+|-|||.-....+.. ..|...|-++.|.| +...++++..|..|+|+|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 369999999999999999999999999999999765444433 34678899999998 45789999999999999998
Q ss_pred CCc----------eeEEeecC-CCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCC-CeEeeeceeecccccccccCCCC
Q 001621 107 SRS----------LACCLKWE-SNITAFSVISGS-HFMYIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPL 173 (1043)
Q Consensus 107 t~~----------~l~~~~~~-~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~-~~l~~~~~~i~~~~~~~~~~~~~ 173 (1043)
.-+ ..+.+.-+ ..|.-++..|++ +.+.++++||+++-+++.... +... -.++.. + ....
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~---~~~~~~-l----~ny~ 197 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD---EDCPSI-L----VNYN 197 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc---ccccHH-H----HHhc
Confidence 522 22222222 678888999998 677899999999776654310 0000 000000 0 0001
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccC-------ccC-C
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG-------ISE-H 245 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~-~ 245 (1043)
...-...++..+|. +..+|++|+.+--++|||.+.... .+....... ...|..++.. +.. +
T Consensus 198 ~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~--------~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 198 PQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMN--------TCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred hhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhcc--CCCCCcccc--------CCCCcccchhheecCccccCcc
Confidence 12235678999998 466899999999999999643211 111100000 0001001000 100 0
Q ss_pred CCCCCC---eEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccc
Q 001621 246 QPEEKE---ISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 246 ~~~~~~---V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
-..... ++-+.|+ |+|..|++....-.|.++|+..++.+.
T Consensus 267 gn~~~~~~~~t~vtfn-pNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFN-PNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cccccceeeeEEEEEC-CCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 001223 4457786 999999998888899999998887554
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=9.1e-09 Score=115.39 Aligned_cols=279 Identities=14% Similarity=0.197 Sum_probs=176.5
Q ss_pred eecccCCCCeEEEEEcCCCC-EEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001621 29 AVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 29 ~~~~G~~~~v~~lafsp~g~-lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
..-+++|..-+.+..+|||+ +||+|+..-.|+|||..+....+.-+ ....|...-.+.|-..++-...|..|.+-.-.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 34468888889999999998 58999999999999998877665433 24566666666666667777778777654322
Q ss_pred CCceeEEeecCCCEEEEEEe-CCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 107 SRSLACCLKWESNITAFSVI-SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 107 t~~~l~~~~~~~~Vtav~~s-p~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
. ..+.+..+..-..++.+ |..+++++|+. .. |+.++.+.+++.. ||.+. .+.+.+|..+
T Consensus 125 G--~hy~~RIP~~GRDm~y~~~scDly~~gsg-~e--vYRlNLEqGrfL~-P~~~~--------------~~~lN~v~in 184 (703)
T KOG2321|consen 125 G--RHYRTRIPKFGRDMKYHKPSCDLYLVGSG-SE--VYRLNLEQGRFLN-PFETD--------------SGELNVVSIN 184 (703)
T ss_pred C--eeeeeecCcCCccccccCCCccEEEeecC-cc--eEEEEcccccccc-ccccc--------------cccceeeeec
Confidence 1 22233333333344444 34445555543 33 4556666666553 44432 3678999999
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
|. .| +|++|..+|.|..||-+....+..+.... ++ ...|+.. ....|+++.|. -+|-.+
T Consensus 185 ~~-hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~-----~v----~s~pg~~---------~~~svTal~F~-d~gL~~ 243 (703)
T KOG2321|consen 185 EE-HG-LLACGTEDGVVEFWDPRDKSRVGTLDAAS-----SV----NSHPGGD---------AAPSVTALKFR-DDGLHV 243 (703)
T ss_pred Cc-cc-eEEecccCceEEEecchhhhhheeeeccc-----cc----CCCcccc---------ccCcceEEEec-CCceeE
Confidence 96 34 57778889999999998877665554310 00 0111111 15679999996 779999
Q ss_pred EEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecccccCCcceEEEEeecCCCCCCCCCceEEEecCCCCCCcceEEE
Q 001621 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1043)
Q Consensus 266 ~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~w~~~~~~~~~~~~~llv~gg~~~~~~~~ltv 345 (1043)
++|..+|.+.|+|+.+.+.+.. .......||..+.|.- . +....+++.. .+.+.+
T Consensus 244 aVGts~G~v~iyDLRa~~pl~~--------------kdh~~e~pi~~l~~~~-----~-~~q~~v~S~D-----k~~~ki 298 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASKPLLV--------------KDHGYELPIKKLDWQD-----T-DQQNKVVSMD-----KRILKI 298 (703)
T ss_pred EeeccCCcEEEEEcccCCceee--------------cccCCccceeeecccc-----c-CCCceEEecc-----hHHhhh
Confidence 9999999999999987653321 1112345888888853 2 2333444442 245666
Q ss_pred EEcCcccccccceeeeeEeecCCCceeEEEEeecCC
Q 001621 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1043)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s 381 (1043)
|+-. ... +...+.+...+.|+|++|..+
T Consensus 299 Wd~~----~Gk----~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 299 WDEC----TGK----PMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred cccc----cCC----ceeeccccCCcCceeeecCCc
Confidence 6422 111 123345566688999998764
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.13 E-value=2.9e-10 Score=131.69 Aligned_cols=156 Identities=13% Similarity=0.196 Sum_probs=118.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
|...|.|..|...+.++++++.|..++||..+++.++.+..+| +.|+.++++...-++++++.|..|+||.+....
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--- 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--- 265 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc---
Confidence 4567999999999999999999999999999999999999876 799999999999999999999999999876421
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
|.. ...+|.+.|++|+|+|. .+.+.||++++||.+-.-. .+ . +.
T Consensus 266 ---pvs-----------vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~----~y--------~----pr 309 (1113)
T KOG0644|consen 266 ---PVS-----------VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPR----IY--------V----PR 309 (1113)
T ss_pred ---hHH-----------HHhccccceeeeccCcc------ccCCCCCceEecccccccc----cc--------C----CC
Confidence 111 12478899999999995 3667899999999871111 11 0 11
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
.+..++ ...+.++.|- .++..++||+.|+.-..|.+
T Consensus 310 p~~~~~---------~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 310 PLKFTE---------KDLVDSILFE-NNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred CCCccc---------ccceeeeecc-ccccccccccCCcccccchh
Confidence 111111 4556677774 77888888888777666554
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.12 E-value=1.3e-08 Score=107.21 Aligned_cols=178 Identities=13% Similarity=0.199 Sum_probs=125.1
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEeec---CCCEEEEEEeCCCCEEE
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLKW---ESNITAFSVISGSHFMY 133 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~-t~~~l~~~~~---~~~Vtav~~sp~~~~l~ 133 (1043)
.|-|||-....++.++.-..+|+.+.+.++. +++--++.|.||... .-+.++.+.. +....++.-..+..+|+
T Consensus 76 kviIWDD~k~~~i~el~f~~~I~~V~l~r~r---iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFNSEIKAVKLRRDR---IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred eEEEEecccCcEEEEEEeccceeeEEEcCCe---EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 3555664444444444446688999888873 444468899999988 4566666642 34444444333333333
Q ss_pred -EEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCe-EEEEEccCCe
Q 001621 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL-VILWDVSEAQ 211 (1043)
Q Consensus 134 -vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~-I~lWd~~~~~ 211 (1043)
-|..-|.|+|.++...... .|..| .+|.++|.+++.+- +|+++++++..|+ |+|||..++.
T Consensus 153 fPg~k~GqvQi~dL~~~~~~---~p~~I------------~AH~s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPN---APSII------------NAHDSDIACVALNL--QGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred cCCCccceEEEEEhhhcCcC---CceEE------------EcccCceeEEEEcC--CccEEEEeccCcEEEEEEEcCCCc
Confidence 4667799999887653221 12222 35889999999998 4999999999995 7999999999
Q ss_pred EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
.++.+.. |. ....|.+++|+ |++++|++.+.-|+|.++.+....
T Consensus 216 ~l~E~RR--------------G~-------------d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 216 LLQELRR--------------GV-------------DRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred Eeeeeec--------------CC-------------chheEEEEEeC-CCccEEEEEcCCCeEEEEEeecCC
Confidence 8876531 11 15679999996 999999999999999999987644
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1e-08 Score=109.61 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=118.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC------CceeEEeec-C-CCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001621 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------RSLACCLKW-E-SNITAFSVISGSHFMYIGDENGLMSVIK 145 (1043)
Q Consensus 74 ~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t------~~~l~~~~~-~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~ 145 (1043)
.|.+-|.+|+|+.++++|++++.|..++||+++. .+++..... | ++|-|++|+....++|+|..+|+|-..+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 3566799999999999999999999999999864 345555543 3 7999999999999999999999875555
Q ss_pred EeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe-EEEEeCCcccccc
Q 001621 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLK 224 (1043)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~-~~~~~~~~~~~~~ 224 (1043)
+.+. +-. |... .....+.|..+..+|. +. .+++.+.++.|.+||.++.. .+..+ .+
T Consensus 134 iEt~--qsi---~V~~----------~~~~~~~VY~m~~~P~-DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~- 190 (609)
T KOG4227|consen 134 IETK--QSI---YVAN----------ENNNRGDVYHMDQHPT-DN-TLIVVTRAKLVSFIDNRDRQNPISLV-----LP- 190 (609)
T ss_pred cccc--eee---eeec----------ccCcccceeecccCCC-Cc-eEEEEecCceEEEEeccCCCCCCcee-----ee-
Confidence 5442 111 2211 1123568999999998 34 48999999999999998754 11100 00
Q ss_pred cccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEcCCCCC
Q 001621 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
+.. .+...++.|+ |.. ..|++.++-|-+-+||+.-.+
T Consensus 191 -------AN~--------------~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 191 -------ANS--------------GKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred -------cCC--------------Cccceeeeec-CCCceeEEeccccCCCCceeecccc
Confidence 100 3445677787 664 567888889999999986543
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.10 E-value=1.6e-07 Score=99.15 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=77.8
Q ss_pred CCCcEEEEEeCCCc-EEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcc
Q 001621 493 SVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1043)
Q Consensus 493 ~~~~~l~tg~~Dgt-VriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~ 571 (1043)
.+|.++||+|..|| |||||..+|. +++.+.. ......|.+|+|||+..+||++++.|+|.||.+......
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~--~l~E~RR-------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGT--LLQELRR-------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCc--Eeeeeec-------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCC
Confidence 45678999999997 7999999998 3444432 223457999999999999999999999999999764321
Q ss_pred cceeeeccCCCceeeecCCCccee-eEEecCCCCCEEEEEEcCCCcEEEEEeCCCeE
Q 001621 572 KNFLFVLETKSEVHALPEGKISLC-RAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1043)
Q Consensus 572 ~~~~f~~~~~~~~~~~~~~~~~~~-~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V 627 (1043)
.... .+-....+...+.-. -+| ...+....++...++|..+-..++.-+.||+-
T Consensus 262 ~~~~-SSl~~~~~~lpky~~-S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 262 EDES-SSLSFKRLVLPKYFS-SEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred cccc-ccccccccccchhcc-cceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 1100 000000000000000 011 12234457778888888875556666677763
No 211
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.08 E-value=9.2e-09 Score=106.60 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=142.3
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEEcC-------CcEEEEcCCC---------ceEEEecC--CCCCeEEEEEecCCCEEEE
Q 001621 33 GIPATASILAFDH-IQRLLAIATLD-------GRIKVIGGDG---------IEGLLISP--SQLPYKNLEFLQNQGFLIS 93 (1043)
Q Consensus 33 G~~~~v~~lafsp-~g~lLAvgt~d-------G~I~v~~~~~---------~~~~~~~~--~~~~V~~l~Fs~d~~~Lvs 93 (1043)
-+.+.|..++-+| ++++||+...+ -.+-||..+. .|.+..++ .-..|.++.|.||+..|++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3567899999999 56789988764 2356787532 22222232 2348999999999999998
Q ss_pred EECCCcEEEEECCCCce-eEEeec------CCCEEEEEEeC--CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccc
Q 001621 94 ITNDNEIQVWSLESRSL-ACCLKW------ESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA 164 (1043)
Q Consensus 94 ~s~d~~I~vWdl~t~~~-l~~~~~------~~~Vtav~~sp--~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~ 164 (1043)
.. |+.|.+|+++.+.. +..+.. ....++-+++| +++.++ .+.+++++.|++.+.... +.|.
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~-----~sI~--- 210 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKN-----NSIE--- 210 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhh-----cchh---
Confidence 87 99999999987654 444432 23567777888 455554 456788888876542211 2232
Q ss_pred cccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCcc
Q 001621 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1043)
Q Consensus 165 ~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (1043)
.+|...|..+.|+|+- -..|+++++||-|+|||.+.-+. ++.+.
T Consensus 211 --------dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~-------------------------- 255 (370)
T KOG1007|consen 211 --------DAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELP-------------------------- 255 (370)
T ss_pred --------hhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccC--------------------------
Confidence 3567789999999973 34588899999999999986542 22221
Q ss_pred CCCCCCCCeEEEEEecCC-CCEEEEEEcCCcEEEEcCCCCC
Q 001621 244 EHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 244 ~~~~~~~~V~sl~w~sp~-g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
.|...|.++.|+ |. .+.|++|+.|..|.+|...+-.
T Consensus 256 ---~HsHWvW~VRfn-~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 256 ---GHSHWVWAVRFN-PEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred ---CCceEEEEEEec-CccceEEEecCCCceeEEEeccccc
Confidence 147889999998 55 5678899999999999886654
No 212
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.7e-08 Score=116.53 Aligned_cols=216 Identities=13% Similarity=0.127 Sum_probs=129.8
Q ss_pred CCCCeEEEEEcC------------CCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCC----CEEEEEEC
Q 001621 34 IPATASILAFDH------------IQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQ----GFLISITN 96 (1043)
Q Consensus 34 ~~~~v~~lafsp------------~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~----~~Lvs~s~ 96 (1043)
|++.|+.+.|.| .+-+||++...|+|-|||..-...+..+ ++..++..++|.+.+ ..|++...
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 455678888755 2347899999999999997654444433 456789999998742 47888899
Q ss_pred CCcEEEEECCCCceeEEeec-CCCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeCCCC-eEeeeceeeccc--cc-----c
Q 001621 97 DNEIQVWSLESRSLACCLKW-ESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISAD--AL-----S 166 (1043)
Q Consensus 97 d~~I~vWdl~t~~~l~~~~~-~~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~~~~-~l~~~~~~i~~~--~~-----~ 166 (1043)
.+.|.+||..||+.+..+.. +....|+.++|- .+.+.+-+..|-|-+.+.-.... ......|.|..+ .+ .
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere 213 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERE 213 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhh
Confidence 99999999999999887764 456677999985 44555555566443433321110 000001223221 10 0
Q ss_pred cccCCCCC-CCC------CeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcc
Q 001621 167 EKAGFPLL-SHQ------PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1043)
Q Consensus 167 ~~~~~~~~-~~~------~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (1043)
.+.+.... ... -...++|+|. --+.+++.+..+. .++|++-..++....- +
T Consensus 214 ~at~ns~ts~~~sa~fity~a~faf~p~-~rn~lfi~~prel-lv~dle~~~~l~vvpi---------e----------- 271 (1062)
T KOG1912|consen 214 TATGNSTTSTPASAYFITYCAQFAFSPH-WRNILFITFPREL-LVFDLEYECCLAVVPI---------E----------- 271 (1062)
T ss_pred hhccccccCCCcchhHHHHHHhhhcChh-hhceEEEEeccce-EEEcchhhceeEEEEe---------c-----------
Confidence 01111000 000 0223567885 2345777777665 6889887766644311 0
Q ss_pred cCccCCCCCCCCeEEEEEecCCC--CEEEEEEcCCcEEEEcCCC
Q 001621 240 EGISEHQPEEKEISALCWASSSG--SILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~sp~g--~~l~tg~~DG~I~iWd~~t 281 (1043)
...+-=+.|. |++ ..|.+++.||.+.+|--..
T Consensus 272 ---------r~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 ---------RGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ---------cCCcceeEec-cCCCcceEEEEecCCeEEEEEeec
Confidence 1112223343 554 5699999999999997654
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3.1e-08 Score=116.65 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=132.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEc---CCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEE-CCC--cEEEEECCCC
Q 001621 35 PATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDN--EIQVWSLESR 108 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~---dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s-~d~--~I~vWdl~t~ 108 (1043)
...+...+|+|+|+.||..+. +..|++|+..+.+..........+..+.|+||+.+|+... .++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 446789999999999987653 3578999987665433222233455789999999888653 344 5899999998
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
+.......+..+....|+|+++.|+..+. +|..++|.++.+.+.... +.. ....+....|+|+
T Consensus 278 ~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----lt~------------~~~~~~~~~~SpD 341 (429)
T PRK03629 278 QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----ITW------------EGSQNQDADVSSD 341 (429)
T ss_pred CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----eec------------CCCCccCEEECCC
Confidence 76654445567889999999998866554 567788888776543321 111 1123456789994
Q ss_pred CCCCEEEEEECC---CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 188 SSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 188 d~g~~ll~~~~d---g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
|++++....+ ..|.+||+.++...... . .....+..|+ |||+.
T Consensus 342 --G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~------------------------------~~~~~~p~~S-pDG~~ 387 (429)
T PRK03629 342 --GKFMVMVSSNGGQQHIAKQDLATGGVQVLT-D------------------------------TFLDETPSIA-PNGTM 387 (429)
T ss_pred --CCEEEEEEccCCCceEEEEECCCCCeEEeC-C------------------------------CCCCCCceEC-CCCCE
Confidence 8777765543 35788999887643221 1 0111245686 99999
Q ss_pred EEEEEcCCc---EEEEcCC
Q 001621 265 LAVGYIDGD---ILLWNTS 280 (1043)
Q Consensus 265 l~tg~~DG~---I~iWd~~ 280 (1043)
|+.++.|+. +.+|++.
T Consensus 388 i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEEcCCCceEEEEEECC
Confidence 999998875 6677774
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=5.2e-08 Score=101.29 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=105.2
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCC-eEEEEecCccEEEEEecCCCcc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDA 571 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~-~La~g~~dG~V~i~~~~~~~~~ 571 (1043)
-+.+++.|.+-|-|-.|||++++.. ..++++ +-.|..+|..|+|...+. .+|+.+.||+||+||++....-
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~---~~vkTQ-----LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVS---GTVKTQ-----LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccc---cceeeE-----EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 3567899999999999999998731 222222 347889999999998654 6789999999999999864311
Q ss_pred cceeeec------------------------cCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC-CcEEEEEeCCCe
Q 001621 572 KNFLFVL------------------------ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGR 626 (1043)
Q Consensus 572 ~~~~f~~------------------------~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d-g~~lA~Gs~dg~ 626 (1043)
+..+-. .+..++..+...--..+...|..|++.|++|+|.|- +.+++++++|..
T Consensus 233 -TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 233 -TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred -eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 000000 012223333222222334557899999999999995 578999999999
Q ss_pred EEEEEcCCceE--EEEeecCCCCCCCeEEEEEEe
Q 001621 627 VAVLDMNLLSV--LFFTDDISGSSSPIISMTWTE 658 (1043)
Q Consensus 627 V~vwD~~~~~~--l~~~~~~~~~~~~V~sl~fs~ 658 (1043)
+.+||+.+.-. +..-.+....+..|..|.|++
T Consensus 312 aliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS 345 (364)
T ss_pred EEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence 99999965211 100000011357899999984
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=8e-09 Score=121.83 Aligned_cols=177 Identities=13% Similarity=0.178 Sum_probs=121.5
Q ss_pred CCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEE
Q 001621 56 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1043)
Q Consensus 56 dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l 132 (1043)
+.+|++||.++........+...+....|+||+.+|+.++.+ ..|.+||+.+++........+...+++|+|||++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 468999998766544333456689999999999999888754 36999999988643333344455678999999988
Q ss_pred EEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE-CCCeEEEEEccCC
Q 001621 133 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEA 210 (1043)
Q Consensus 133 ~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~-~dg~I~lWd~~~~ 210 (1043)
+++. .+|.+.+|.++.+.+.+.. +. .+...+.+..|+|+ |+.|+.++ .+|...||++...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~----lt------------~~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQ----LT------------SGAGNNTEPSWSPD--GQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEe----ec------------cCCCCcCCEEECCC--CCEEEEEECCCCCceEEEEECC
Confidence 8765 6888888988875544331 11 12345678999994 87666555 5788888887532
Q ss_pred e-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCc
Q 001621 211 Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 211 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
. ....+.+ .. .+..|+ |||+.|+.++.++ +..||+.++..
T Consensus 325 ~~~~~~l~~------------------------------~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 325 GGGASLVGG------------------------------RG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred CCCeEEecC------------------------------CC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCCe
Confidence 1 1111111 11 245685 9999999888765 55599987753
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.01 E-value=7e-07 Score=102.42 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=123.3
Q ss_pred CCEEEEEE-cCCcEEEEcCCCceEEEecCCCCC-eEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEE
Q 001621 47 QRLLAIAT-LDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFS 124 (1043)
Q Consensus 47 g~lLAvgt-~dG~I~v~~~~~~~~~~~~~~~~~-V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~ 124 (1043)
++++++.. .+|.|.|.|....+.+..++.... -..+.|++|++++++++.|+.|.+||+.+++.+.++........++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 35665554 579999999988887776664333 3457899999999999999999999999999999999888889999
Q ss_pred EeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeE
Q 001621 125 VISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALV 202 (1043)
Q Consensus 125 ~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I 202 (1043)
+++||++++++. ..+.+.|++ ....++. ..++..... .....+++.+|-.+|. ...+++.-. .+.|
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D--~~tle~v---~~I~~~~~~-----~~~~~~Rv~aIv~s~~--~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVID--AETLEPV---KTIPTGGMP-----VDGPESRVAAIVASPG--RPEFVVNLKDTGEI 152 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEE--TTT--EE---EEEE--EE------TTTS---EEEEEE-SS--SSEEEEEETTTTEE
T ss_pred EcCCCCEEEEEecCCCceeEec--cccccce---eeccccccc-----ccccCCCceeEEecCC--CCEEEEEEccCCeE
Confidence 999999999886 467776654 4434443 233321110 0113456788877774 333444444 5777
Q ss_pred EEEEccCCeEEE--EeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE-EcCCcEEEEcC
Q 001621 203 ILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNT 279 (1043)
Q Consensus 203 ~lWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg-~~DG~I~iWd~ 279 (1043)
.+-|....+.+. .+.. ........|. |++++++++ ..++.|-++|.
T Consensus 153 ~vVdy~d~~~~~~~~i~~------------------------------g~~~~D~~~d-pdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKV------------------------------GRFPHDGGFD-PDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEETTTSSCEEEEEEE--------------------------------TTEEEEEE--TTSSEEEEEEGGGTEEEEEET
T ss_pred EEEEeccccccceeeecc------------------------------cccccccccC-cccceeeecccccceeEEEee
Confidence 777776543222 2110 3345577896 999987765 45778888887
Q ss_pred CCCC
Q 001621 280 STTA 283 (1043)
Q Consensus 280 ~tg~ 283 (1043)
.+++
T Consensus 202 ~~~k 205 (369)
T PF02239_consen 202 KTGK 205 (369)
T ss_dssp TTTE
T ss_pred ccce
Confidence 6543
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.01 E-value=8.9e-08 Score=102.88 Aligned_cols=188 Identities=13% Similarity=0.155 Sum_probs=136.9
Q ss_pred CCCEEEEEEcC--CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEee-c---CCC
Q 001621 46 IQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-W---ESN 119 (1043)
Q Consensus 46 ~g~lLAvgt~d--G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~-~---~~~ 119 (1043)
..+|+|+.+.+ ..+++++.+....+....-..+|.++.+..+ +|+++=.+. |.|+|+.+-++++++. + +..
T Consensus 55 SSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 55 SSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccc
Confidence 44666666654 2367777665555544444567888887665 466665554 9999999999999985 2 245
Q ss_pred EEEEEEeCCCCEEEEEe--CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE
Q 001621 120 ITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1043)
Q Consensus 120 Vtav~~sp~~~~l~vG~--~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~ 197 (1043)
+.++++++.+.|++.-+ ..|.|.||+...- +.. -.| ..|.+++.+|+|+| +|++|++++
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v---~~I------------~aH~~~lAalafs~--~G~llATAS 192 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPV---NTI------------NAHKGPLAALAFSP--DGTLLATAS 192 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccc--eee---eEE------------EecCCceeEEEECC--CCCEEEEec
Confidence 78888888888887543 3688888776542 111 111 25889999999999 499999999
Q ss_pred CCCe-EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001621 198 ENAL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1043)
Q Consensus 198 ~dg~-I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~i 276 (1043)
+.|+ |+|+++.+|+.+..|... . ....|.+++|+ |++++|++.+..++|++
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG------~---------------------~~~~IySL~Fs-~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRG------T---------------------YPVSIYSLSFS-PDSQFLAASSNTETVHI 244 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCC------c---------------------eeeEEEEEEEC-CCCCeEEEecCCCeEEE
Confidence 9995 689999999887665320 0 14568999996 99999999999999999
Q ss_pred EcCCCCC
Q 001621 277 WNTSTTA 283 (1043)
Q Consensus 277 Wd~~tg~ 283 (1043)
+.+..-.
T Consensus 245 FKL~~~~ 251 (391)
T KOG2110|consen 245 FKLEKVS 251 (391)
T ss_pred EEecccc
Confidence 9986543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=5.7e-08 Score=114.80 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=129.1
Q ss_pred CCCeEEEEEcCCCCEEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEE-EEECCC--cEEEEECCCC
Q 001621 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLESR 108 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lv-s~s~d~--~I~vWdl~t~ 108 (1043)
...+...+|+|+|+.||..+.+ ..|++|+..+.+.............+.|+||+.+|+ +.+.++ .|.+||+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 4457889999999999988744 469999987655433222233455789999998775 445554 5999999998
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
+........+..+..+|+|++++++..+ .+|..++|.++.+.+.... +.. .......++|+|+
T Consensus 283 ~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~------------~g~~~~~~~~SpD 346 (433)
T PRK04922 283 QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTF------------QGNYNARASVSPD 346 (433)
T ss_pred CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eec------------CCCCccCEEECCC
Confidence 7544333334557789999999887765 4566677777765443321 110 0112346789994
Q ss_pred CCCCEEEEEECCC---eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 188 SSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 188 d~g~~ll~~~~dg---~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
|+.++....++ .|.+||+.+++.. .+.. .....+..|+ |||++
T Consensus 347 --G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------------------------------~~~~~~p~~s-pdG~~ 392 (433)
T PRK04922 347 --GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------------------------------GSLDESPSFA-PNGSM 392 (433)
T ss_pred --CCEEEEEECCCCceeEEEEECCCCCeE-ECCC------------------------------CCCCCCceEC-CCCCE
Confidence 87777655433 6899999877654 2211 1112245796 99999
Q ss_pred EEEEEcC---CcEEEEcCCC
Q 001621 265 LAVGYID---GDILLWNTST 281 (1043)
Q Consensus 265 l~tg~~D---G~I~iWd~~t 281 (1043)
|+..+.+ +.|.+|++..
T Consensus 393 i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 393 VLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEEecCCceEEEEEECCC
Confidence 8877764 3577777743
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=8.7e-08 Score=113.36 Aligned_cols=200 Identities=10% Similarity=0.026 Sum_probs=130.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEc---CCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEE-EEECCCc--EEEEECC
Q 001621 33 GIPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNE--IQVWSLE 106 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~---dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lv-s~s~d~~--I~vWdl~ 106 (1043)
.+...+...+|+|+|+.||..+. +..|++|+..+.+..........+....|+||+..|+ +.+.++. |.+||+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 34557899999999999888764 4689999987665443333345677889999998775 4455554 7788998
Q ss_pred CCceeEEeecCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 107 t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+++........+..+...++|++++++..+ .+|..++|.++.+.+.... +.. ....+....|+
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~----lt~------------~~~~~~~~~~S 342 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR----ISF------------GGGRYSTPVWS 342 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE----eec------------CCCcccCeEEC
Confidence 887644333445667889999999887766 4565566766655443321 110 12335567899
Q ss_pred CCCCCCEEEEEECC---CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCC
Q 001621 186 PNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1043)
Q Consensus 186 p~d~g~~ll~~~~d---g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g 262 (1043)
|+ |++|+....+ ..|.+||+..+... .+.. ...+.+..|+ |||
T Consensus 343 pd--G~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~------------------------------~~~~~~p~~s-pDG 388 (435)
T PRK05137 343 PR--GDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS------------------------------GFLVEGPTWA-PNG 388 (435)
T ss_pred CC--CCEEEEEEcCCCceEEEEEECCCCceE-eccC------------------------------CCCCCCCeEC-CCC
Confidence 94 7777765543 26788887654432 2110 1124456796 999
Q ss_pred CEEEEEEcCC------cEEEEcCCCC
Q 001621 263 SILAVGYIDG------DILLWNTSTT 282 (1043)
Q Consensus 263 ~~l~tg~~DG------~I~iWd~~tg 282 (1043)
+.|+..+.++ .|.+.|+..+
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCC
Confidence 9988766532 4666676543
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=6.6e-09 Score=115.62 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=160.2
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecC--CCeEEEEe
Q 001621 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI--NSSLAVGN 555 (1043)
Q Consensus 478 l~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd--~~~La~g~ 555 (1043)
|.||...+.++ .++.+|.+|++|+.|-.+-|||...-+ +++.+. .||..-|-++-|-|. ++.+++|.
T Consensus 46 L~GH~GCVN~L-eWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~--------TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCL-EWNADGELLASGSDDTRLIVWDPFEYK--LLHSIS--------TGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecce-eecCCCCEEeecCCcceEEeecchhcc--eeeeee--------cccccceeEEeeeccCCCeEEEecc
Confidence 77888777777 899999999999999999999988544 444432 589999999999985 56889999
Q ss_pred cCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCC-cEEEEEeCCCeEEEEEcCC
Q 001621 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 556 ~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg-~~lA~Gs~dg~V~vwD~~~ 634 (1043)
.|..|++||+......+.. +.. -.....+.-|...|.-||-.|++ ..+-++++||+++=+|++.
T Consensus 115 gDk~i~lfdl~~~~~~~~d----------~~~-----~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD----------HGM-----EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccc----------cCc-----cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999999999864321110 000 00112345699999999999999 7788999999999999988
Q ss_pred ceEEEE-eecCC---CC---CCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCC------
Q 001621 635 LSVLFF-TDDIS---GS---SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS------ 701 (1043)
Q Consensus 635 ~~~l~~-~~~~~---~~---~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~------ 701 (1043)
+..--. ..+.. .. --...++..++.. -.||++|+.|-..++||-.-
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~r---------------------p~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSR---------------------PYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCC---------------------CceEEecCCCchhhhhhhhhhccCCC
Confidence 643110 00000 00 0123344444321 25699999999999999311
Q ss_pred C-CeeecCCCCcCCCceeEEEEEeccEEEEeeCcccCCCcceeeecccC--CcceeEEeeeecceeEEEEEEEeeCcEEE
Q 001621 702 E-NMISSSPWHLKKKVIAISMEVIDSVRLYSRKSVIQGNNKTVQKVKHK--NRCCWASTIEKDEKVCGLLLLFQTGAVQI 778 (1043)
Q Consensus 702 g-~~l~~~~~~~~~~~~a~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~--~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i 778 (1043)
+ -....| |++.. ..++-|.+.+ .|..+. ++. ..||. ++.++|+|.=|+.-+..-.|.+
T Consensus 239 s~~~~~~~---pp~~~--------~cv~yf~p~h-----lkn~~g-n~~~~~~~~t--~vtfnpNGtElLvs~~gEhVYl 299 (758)
T KOG1310|consen 239 SDGTMNTC---PPKDC--------RCVRYFSPGH-----LKNSQG-NLDRYITCCT--YVTFNPNGTELLVSWGGEHVYL 299 (758)
T ss_pred CCccccCC---CCccc--------chhheecCcc-----ccCccc-ccccceeeeE--EEEECCCCcEEEEeeCCeEEEE
Confidence 1 111222 12222 2345555533 222211 112 23433 3445899999988888899999
Q ss_pred EeCCChhhhh
Q 001621 779 RSLPDLELVM 788 (1043)
Q Consensus 779 ~slp~l~~~~ 788 (1043)
|++-.-+...
T Consensus 300 fdvn~~~~~~ 309 (758)
T KOG1310|consen 300 FDVNEDKSPT 309 (758)
T ss_pred EeecCCCCce
Confidence 9996555443
No 221
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=4.5e-07 Score=105.11 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=90.4
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEeCC------------CCEEEEEeCCCcEEE
Q 001621 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISG------------SHFMYIGDENGLMSV 143 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~sp~------------~~~l~vG~~dG~v~v 143 (1043)
..-.++.|++.| |++-+..+.|.|-|..+-+.+.++..| ..|+.+.+.|. .-.+++++-.|.|-+
T Consensus 16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346678899998 999999999999999999999999866 78999988754 225778888999988
Q ss_pred EEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC-CCC-CEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001621 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSG-NRVLIAYENALVILWDVSEAQIIFVGGG 218 (1043)
Q Consensus 144 ~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~-d~g-~~ll~~~~dg~I~lWd~~~~~~~~~~~~ 218 (1043)
|++-.... +. |+ ..+..+|..++|-|. |+. ..|++-.....+.+|+..+|+......|
T Consensus 94 ~d~~~~s~--------~~--~l-------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 94 VDFVLASV--------IN--WL-------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred EEehhhhh--------hh--hh-------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 88654210 11 11 234567788888663 234 4466667788999999999988766544
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3.6e-07 Score=108.13 Aligned_cols=176 Identities=11% Similarity=0.128 Sum_probs=119.3
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE-
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY- 133 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~---d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~- 133 (1043)
.|.++|.++........+...+...+|+||+.+|+.++. +..|.+||+.+++.......++.+.+.+|+|+|+.|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEE
Confidence 788888766554433345678999999999999888764 4689999999987654334567788899999999875
Q ss_pred EEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001621 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1043)
Q Consensus 134 vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg--~I~lWd~~~~ 210 (1043)
+...+|...+|.++.+.+.+.. +. .+........|+|+ |++|+.++. +| .|.+||+..+
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~~~----Lt------------~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTTTR----LT------------DSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEecCCCceEEEEECCCCceEE----cc------------CCCCccCceeEcCC--CCEEEEEECCCCCCeEEEEECCCC
Confidence 5566777677777765544331 11 11233456899994 877777664 33 5778887766
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEcCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D---G~I~iWd~~tg 282 (1043)
........ ...+....|+ |+|+.|+....+ ..|.+||+.++
T Consensus 325 ~~~~lt~~------------------------------~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 325 NPRRISFG------------------------------GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CeEEeecC------------------------------CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 54332111 2334567796 999999887654 25778887544
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.91 E-value=3.2e-08 Score=103.16 Aligned_cols=111 Identities=6% Similarity=0.183 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCEEEEEE--cCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCc
Q 001621 35 PATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRS 109 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt--~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~ 109 (1043)
.+.|.+++|+|+|+.+|+.. .++.|.+|+.+ .+.+..++ ..++..+.|+|+|.+|+.++.+ |.|.+||+++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 34599999999999877654 56899999997 55555554 4678899999999999998754 569999999999
Q ss_pred eeEEeecCCCEEEEEEeCCCCEEEEEeC------CCcEEEEEEeC
Q 001621 110 LACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYDA 148 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~l~vG~~------dG~v~v~~~d~ 148 (1043)
.+.+.... .++.++++|+|+++++++. |..++||++..
T Consensus 137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 137 KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88877644 4789999999999998875 45578888764
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.90 E-value=2.3e-09 Score=117.51 Aligned_cols=196 Identities=13% Similarity=0.196 Sum_probs=159.0
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
....+.|+.+|+.|+.|...|-|--||-.+....+.+.-...|..+.|..+. .++++...+-+.||| ..|..++++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEec-CCCcEEeehhh
Confidence 3567889999999999999999999999888888888778899999999884 466677888999999 46888999999
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
+..|..+.|-|---+|+++++.|-++-.|+.. +++.. ......+++..+.-+|. +..+-+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklVa---------------~~~t~~G~~~vm~qNP~--NaVih~G 269 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLVA---------------SIRTGAGRTDVMKQNPY--NAVIHLG 269 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeech--hhhhH---------------HHHccCCccchhhcCCc--cceEEEc
Confidence 99999999999998999999999776555544 33321 11234567788888996 3357789
Q ss_pred ECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEE
Q 001621 197 YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1043)
Q Consensus 197 ~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~i 276 (1043)
..+|+|.+|+-...+++..+-. |..+|.++++. ++|.+++|.+.|..++|
T Consensus 270 hsnGtVSlWSP~skePLvKiLc-----------------------------H~g~V~siAv~-~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILC-----------------------------HRGPVSSIAVD-RGGRYMATTGLDRKVKI 319 (545)
T ss_pred CCCceEEecCCCCcchHHHHHh-----------------------------cCCCcceEEEC-CCCcEEeecccccceeE
Confidence 9999999999887766543311 37889999997 99999999999999999
Q ss_pred EcCCCCC
Q 001621 277 WNTSTTA 283 (1043)
Q Consensus 277 Wd~~tg~ 283 (1043)
||+..-.
T Consensus 320 WDlR~~~ 326 (545)
T KOG1272|consen 320 WDLRNFY 326 (545)
T ss_pred eeecccc
Confidence 9997754
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.90 E-value=5.3e-06 Score=95.20 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=73.6
Q ss_pred EEEEECCCcEEEEECCCCceeEEeecCCCE-EEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccccc
Q 001621 91 LISITNDNEIQVWSLESRSLACCLKWESNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~V-tav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1043)
+++-..+|.|.|.|..+.+.+.++...+.+ ..+.++||++++|+.+.||.|.++++.. .++. -++..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v---~~i~~------- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT--GKVV---ATIKV------- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS--SSEE---EEEE--------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc--ccEE---EEEec-------
Confidence 345557899999999999999999876665 3467899999999999999998877654 3333 12220
Q ss_pred CCCCCCCCCeEEEEecCCCCCCEEEEE-ECCCeEEEEEccCCeEEEEe
Q 001621 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 170 ~~~~~~~~~V~sl~~sp~d~g~~ll~~-~~dg~I~lWd~~~~~~~~~~ 216 (1043)
.....+++++| ||++++++ +..+.+.++|.++.+++..+
T Consensus 77 ------G~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 77 ------GGNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp ------SSEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred ------CCCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeec
Confidence 12357899999 48877655 67899999999998887665
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=3.7e-08 Score=110.65 Aligned_cols=198 Identities=11% Similarity=0.189 Sum_probs=150.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCCceEEEecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 35 PATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 35 ~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~-~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
|..-..++|+. ...++.+|+. -.|+-++..++..+-.+... ..+.+|..++-.+.|++++.+|.|..||-+++..+.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred CcCCccccccCCCccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 44445677754 5566666654 47888888888877666543 689999999987888888889999999999998887
Q ss_pred EeecCC------------CEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 113 CLKWES------------NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 113 ~~~~~~------------~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
++.... .|+++.|+-+|-.+++|+++|.|.++++.... |+.+.. .....||.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------pl~~kd----------h~~e~pi~ 275 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------PLLVKD----------HGYELPIK 275 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC------ceeecc----------cCCcccee
Confidence 775332 39999999999999999999998777766533 232221 12346899
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecC
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1043)
.+.|.+.+..+ .++......++|||-.+|+.....+. ...+..+|+. |
T Consensus 276 ~l~~~~~~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEp------------------------------t~~lND~C~~-p 323 (703)
T KOG2321|consen 276 KLDWQDTDQQN-KVVSMDKRILKIWDECTGKPMASIEP------------------------------TSDLNDFCFV-P 323 (703)
T ss_pred eecccccCCCc-eEEecchHHhhhcccccCCceeeccc------------------------------cCCcCceeee-c
Confidence 99999986565 55556677889999999988776643 4558889998 9
Q ss_pred CCCEEEEEEcCCcEEEEcCCC
Q 001621 261 SGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 261 ~g~~l~tg~~DG~I~iWd~~t 281 (1043)
++..+.++-+++-+..+=++.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEEecCCCcceeEEccc
Confidence 999999999988877766654
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=1.4e-07 Score=111.22 Aligned_cols=189 Identities=11% Similarity=0.093 Sum_probs=123.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEE--CC
Q 001621 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWS--LE 106 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lv-s~s~d~~I~vWd--l~ 106 (1043)
.....+...+|+|+|+.||..+.+ ..|++|+..+.+..........+....|+||+..|+ +.+.++...||. +.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 345668889999999999987753 359999987665543322334566889999998886 456677766665 55
Q ss_pred CCceeEEee-cCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 107 SRSLACCLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 107 t~~~l~~~~-~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
++. +..+. ..+.++...|+|||++++..+. +|..++|.++.+.+.... +.. .........|
T Consensus 273 ~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~----lt~------------~g~~~~~~~~ 335 (427)
T PRK02889 273 GSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR----VTF------------TGSYNTSPRI 335 (427)
T ss_pred CCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE----Eec------------CCCCcCceEE
Confidence 554 33343 2345677889999998876554 577888888765443321 110 0012235689
Q ss_pred cCCCCCCEEEEEECCC---eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCC
Q 001621 185 HPNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg---~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~ 261 (1043)
+|+ |++++....++ .|.+||+.+++...... .....+..|+ ||
T Consensus 336 SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-------------------------------~~~~~~p~~s-pd 381 (427)
T PRK02889 336 SPD--GKLLAYISRVGGAFKLYVQDLATGQVTALTD-------------------------------TTRDESPSFA-PN 381 (427)
T ss_pred CCC--CCEEEEEEccCCcEEEEEEECCCCCeEEccC-------------------------------CCCccCceEC-CC
Confidence 994 88777666544 68999998876532211 1112345796 99
Q ss_pred CCEEEEEEcCC
Q 001621 262 GSILAVGYIDG 272 (1043)
Q Consensus 262 g~~l~tg~~DG 272 (1043)
|+.|+....++
T Consensus 382 g~~l~~~~~~~ 392 (427)
T PRK02889 382 GRYILYATQQG 392 (427)
T ss_pred CCEEEEEEecC
Confidence 99998887654
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=6.1e-07 Score=105.72 Aligned_cols=177 Identities=10% Similarity=0.112 Sum_probs=116.2
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEE
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~---d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~v 134 (1043)
+|.++|.++........+...+...+|+|||.+|+.++. +..|.+||+.+++.......++.+.+..|+|||+.|+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 688888766543333345568999999999998887653 45799999999875544445556678899999998876
Q ss_pred E-eCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECC-CeEEEE--EccCC
Q 001621 135 G-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILW--DVSEA 210 (1043)
Q Consensus 135 G-~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~d-g~I~lW--d~~~~ 210 (1043)
. ..+|..+||.++.+.+.+.. +. .+...+....|+|+ |++|+.++.+ |...|| |+.++
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~~----lt------------~~~~~~~~~~wSPD--G~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIRQ----VT------------DGRSNNTEPTWFPD--SQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEEE----cc------------CCCCCcCceEECCC--CCEEEEEeCCCCCceEEEEECCCC
Confidence 5 55666556666655444331 11 11234678899994 8878776654 444444 66555
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEcCCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTTA 283 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D---G~I~iWd~~tg~ 283 (1043)
........ .....+.+|+ |||+.|+..+.+ ..|.+||+.++.
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 322 APQRITWE------------------------------GSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCC
Confidence 44321100 1224467785 999999887654 358889987765
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.88 E-value=1.3e-07 Score=98.70 Aligned_cols=149 Identities=17% Similarity=0.293 Sum_probs=102.4
Q ss_pred EEEEecCCCEEEEEEC---C-------CcEEEEECCC-CceeEEee--cCCCEEEEEEeCCCCEEEE--EeCCCcEEEEE
Q 001621 81 NLEFLQNQGFLISITN---D-------NEIQVWSLES-RSLACCLK--WESNITAFSVISGSHFMYI--GDENGLMSVIK 145 (1043)
Q Consensus 81 ~l~Fs~d~~~Lvs~s~---d-------~~I~vWdl~t-~~~l~~~~--~~~~Vtav~~sp~~~~l~v--G~~dG~v~v~~ 145 (1043)
.+.|+++|.+|+.-.. | +...+|-++. ...+..+. ..+.|.+++++|+++.+++ |..++.|.+|+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4567777766655433 1 2355666633 23445554 3467999999999998765 44567788887
Q ss_pred EeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC---CCeEEEEEccCCeEEEEeCCcccc
Q 001621 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVGGGKDLQ 222 (1043)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~---dg~I~lWd~~~~~~~~~~~~~~~~ 222 (1043)
... +.. +.++ ..++..|.|+|+ |++|++++. .|.|.+||+++.+.+....
T Consensus 90 ~~~---~~i---~~~~--------------~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----- 142 (194)
T PF08662_consen 90 VKG---KKI---FSFG--------------TQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----- 142 (194)
T ss_pred Ccc---cEe---Eeec--------------CCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCCEEeeccc-----
Confidence 642 221 2221 346788999995 888888753 4679999999888776542
Q ss_pred cccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc------CCcEEEEcCCCCCc
Q 001621 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI------DGDILLWNTSTTAS 284 (1043)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~------DG~I~iWd~~tg~~ 284 (1043)
...++.++|+ |+|++|+|+.. |+.+++|++. |+.
T Consensus 143 --------------------------~~~~t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 143 --------------------------HSDATDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred --------------------------cCcEEEEEEc-CCCCEEEEEEeccceeccccEEEEEec-CeE
Confidence 2347889996 99999999875 7899999984 443
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.7e-08 Score=102.04 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=136.0
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce-EEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce----
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL---- 110 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~-~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~---- 110 (1043)
..+.-+|+++--.-+|+++.|-.|++|+..... ..+.+..+..|++++|-|.+..-++++.-+-|.+|.....-.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 356778999877789999999999999976544 345666778999999999887788888888899999764311
Q ss_pred --------eEEe--ecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCe
Q 001621 111 --------ACCL--KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1043)
Q Consensus 111 --------l~~~--~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1043)
...+ ..+-.|+++.+.+||..+++++- +.+|.||+.|...+... + ....+.+
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL------~-----------~~glgg~ 241 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL------I-----------PKGLGGF 241 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc------c-----------ccCCCce
Confidence 1112 23468999999999999887764 56799998887533211 1 1234678
Q ss_pred EEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 180 ~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
.-+.|+|+ |..++++.-|+..+||+........... . -.+.|+.+||+
T Consensus 242 slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~erw~--------------------l---------gsgrvqtacWs- 289 (445)
T KOG2139|consen 242 SLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKERWI--------------------L---------GSGRVQTACWS- 289 (445)
T ss_pred eeEEEcCC--CCEEEEecccceeeeehhcccceeccee--------------------c---------cCCceeeeeec-
Confidence 89999994 8889999999999999654332111100 0 14579999996
Q ss_pred CCCCEEEEEEc
Q 001621 260 SSGSILAVGYI 270 (1043)
Q Consensus 260 p~g~~l~tg~~ 270 (1043)
|.|++|+-...
T Consensus 290 pcGsfLLf~~s 300 (445)
T KOG2139|consen 290 PCGSFLLFACS 300 (445)
T ss_pred CCCCEEEEEEc
Confidence 99998775543
No 231
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.86 E-value=2.9e-08 Score=110.32 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=128.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
.|.+.+.|-.|+|+|.-|.+++.||.|++|...+--.-.......+|.|++|.|+...++-+ ..+.+.+=.+.-...+-
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKII 180 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccccccee
Confidence 35566888899999999999999999999987664322222345799999999987655554 44566666665544444
Q ss_pred Eee-cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 113 CLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 113 ~~~-~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
..+ +++-|-++.+++..+.+++|++|-..+||+--. ..+ | ....|.-+|++|+|+|+ +
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G--~~L----f------------~S~~~ey~ITSva~npd---~ 239 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG--ANL----F------------TSAAEEYAITSVAFNPE---K 239 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeecccC--ccc----c------------cCChhccceeeeeeccc---c
Confidence 444 448899999999999999999999999987332 111 1 22356789999999994 3
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC
Q 001621 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D 271 (1043)
.+++++ ..+++ + +.| ..+.|..++|+ +||..+++|...
T Consensus 240 ~~~v~S-~nt~R------------~---------~~p-------------------~~GSifnlsWS-~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 240 DYLLWS-YNTAR------------F---------SSP-------------------RVGSIFNLSWS-ADGTQATCGTST 277 (737)
T ss_pred ceeeee-eeeee------------e---------cCC-------------------CccceEEEEEc-CCCceeeccccC
Confidence 244332 22333 2 111 25679999996 999999999999
Q ss_pred CcEEEE
Q 001621 272 GDILLW 277 (1043)
Q Consensus 272 G~I~iW 277 (1043)
|.+.+=
T Consensus 278 G~v~~A 283 (737)
T KOG1524|consen 278 GQLIVA 283 (737)
T ss_pred ceEEEe
Confidence 987663
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.1e-07 Score=108.23 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=118.0
Q ss_pred CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE
Q 001621 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1043)
Q Consensus 57 G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~ 133 (1043)
..|.++|.++........+...+...+|+||+.+|+.++.+ ..|.+||+.+++.......++.+.+.+|+|||+.++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 36777777654433233445678899999999988887643 459999999987654444566778899999999886
Q ss_pred E-EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEcc--C
Q 001621 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS--E 209 (1043)
Q Consensus 134 v-G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~--~ 209 (1043)
. .+.+|..++|.++...+.+. ++. .+...+....|+| ||++|+..+. +|...||.+. .
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~----~lt------------~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLR----RLT------------QSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEEccCCCceEEEEECCCCCcE----ECC------------CCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC
Confidence 4 56788888998887544332 111 1122345678999 4887776554 4566666553 3
Q ss_pred CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEcCCCCC
Q 001621 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTTA 283 (1043)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG---~I~iWd~~tg~ 283 (1043)
+...... . + ........|+ |||++|+..+.++ .|.+||+.+++
T Consensus 318 g~~~~lt-~-------~----------------------g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 318 GAAQRVT-F-------T----------------------GSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CceEEEe-c-------C----------------------CCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 4332211 0 0 1112346785 9999999877655 59999998765
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=112.67 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=86.0
Q ss_pred cceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEECCCcEEEE
Q 001621 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1043)
Q Consensus 25 ~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d~~I~vW 103 (1043)
+|....+.+- +.|..++|+|||++||+-+.||.+|||+.+..+.+..... -....|++|+||++|+++++.|..|.||
T Consensus 281 NPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 4444444443 3789999999999999999999999999888776644432 3578999999999999999999999999
Q ss_pred ECCCCceeEEeecC-CCEEEEEEeC
Q 001621 104 SLESRSLACCLKWE-SNITAFSVIS 127 (1043)
Q Consensus 104 dl~t~~~l~~~~~~-~~Vtav~~sp 127 (1043)
.+..++.+..=+.| +-|+.|+|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 99999999877655 7899999998
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=3.7e-07 Score=98.88 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=102.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccce
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~ 574 (1043)
...++|+..=+.||+||...+. +|...+ ++. ..+|+++...|+++.+.+|...|.+..||.+.....+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qR-RPV~~f-------d~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g-- 283 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQR-RPVAQF-------DFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG-- 283 (412)
T ss_pred CceEEEEecceeEEEecCcccC-cceeEe-------ccc--cCcceeeeecCCCcEEEEecccchhheecccCceeec--
Confidence 5589999999999999998654 333332 222 2489999999999999999999999999998753221
Q ss_pred eeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEE
Q 001621 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1043)
Q Consensus 575 ~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl 654 (1043)
..|.+.+|.|++|-+.|.+++||+++-|..|||+|+++...++...+ .+..++|
T Consensus 284 ----------------------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv----Ks~lt~i 337 (412)
T KOG3881|consen 284 ----------------------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV----KSRLTFI 337 (412)
T ss_pred ----------------------cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh----hccccEE
Confidence 12577899999999999999999999999999999999877777654 4667888
Q ss_pred EEEe
Q 001621 655 TWTE 658 (1043)
Q Consensus 655 ~fs~ 658 (1043)
.++.
T Consensus 338 l~~~ 341 (412)
T KOG3881|consen 338 LLRD 341 (412)
T ss_pred EecC
Confidence 8864
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.78 E-value=5.9e-09 Score=114.32 Aligned_cols=160 Identities=17% Similarity=0.252 Sum_probs=131.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
-+...|..+.|-.+-+++|++. ..-++|||..+.|..+.- ....|..|.|.|..-.|++++..|.+.--|+.+|+++.
T Consensus 168 ~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa 245 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA 245 (545)
T ss_pred ehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhH
Confidence 3445678888888889999995 568999999998865543 34789999999998888888999999999999999999
Q ss_pred Eeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 113 CLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 113 ~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
.+.. .+.+..+.-.|-...+-+|..+|+|.+|.-..... +.+. .-|.++|.+|++.|. |+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP-------------LvKi----LcH~g~V~siAv~~~--G~ 306 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP-------------LVKI----LCHRGPVSSIAVDRG--GR 306 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch-------------HHHH----HhcCCCcceEEECCC--Cc
Confidence 9975 48899999999999999999999999997544211 1111 136789999999995 99
Q ss_pred EEEEEECCCeEEEEEccCCeEE
Q 001621 192 RVLIAYENALVILWDVSEAQII 213 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~ 213 (1043)
++++++.|..+.|||++.-..+
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred EEeecccccceeEeeecccccc
Confidence 9999999999999999875533
No 236
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=104.75 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=128.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCC-eEEEEecCccEEEEEecCCCcccc
Q 001621 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKN 573 (1043)
Q Consensus 495 ~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~-~La~g~~dG~V~i~~~~~~~~~~~ 573 (1043)
..-|.|++.|+.|.=.|+..+.......-..+-. .......+++..|-+. ++|+|+.|--+||||...-.....
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~-----~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE-----KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred CCcccccccccceeeeeeccCCccceeeeeccCC-----ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence 3468889999999999988776322211000000 0012467888888765 899999999999999865433221
Q ss_pred eeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcC--Cc-------------eEE
Q 001621 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN--LL-------------SVL 638 (1043)
Q Consensus 574 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~--~~-------------~~l 638 (1043)
+.. +. -+.+......-...|||++||.+|.-|.+.+.|-.|+++.-. .+ ..+
T Consensus 320 n~~-------~~------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 320 NGV-------LD------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred cch-------hh------hcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 100 00 011111112334569999999998888889999999999531 11 011
Q ss_pred EEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCcee
Q 001621 639 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIA 718 (1043)
Q Consensus 639 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a 718 (1043)
|+.|. ...-|..+-|- .|...|+++|++-|+|++|+-.++++|..- .
T Consensus 387 YKGHr---N~~TVKgVNFf---------------------GPrsEyVvSGSDCGhIFiW~K~t~eii~~M--e------- 433 (559)
T KOG1334|consen 387 YKGHR---NSRTVKGVNFF---------------------GPRSEYVVSGSDCGHIFIWDKKTGEIIRFM--E------- 433 (559)
T ss_pred hcccc---cccccceeeec---------------------cCccceEEecCccceEEEEecchhHHHHHh--h-------
Confidence 33322 22336666663 233577999999999999999999987653 1
Q ss_pred EEEEEeccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeC
Q 001621 719 ISMEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSL 781 (1043)
Q Consensus 719 ~~~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~sl 781 (1043)
|.+- .+..+...|+...|++-+-|-.|+||+.
T Consensus 434 -------------------gDr~------------VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 434 -------------------GDRH------------VVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -------------------cccc------------eEeccCCCCCCchhhccCCccceeeecC
Confidence 1110 0111222456667888889999999987
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=0.00032 Score=89.35 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=124.4
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEE----cCC--CceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVI----GGD--GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~----~~~--~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~ 108 (1043)
.+.|..+.|-++..-|.++..+|.|-++ +.. ..|.+... ...|.+++||||+..|+.++.++++.+-+- +-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV--DSGILAASWSPDEELLALVTGEGNLLLMTR-DF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE--cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cc
Confidence 3578999999999999999999999998 443 34444433 468999999999999999999988876431 11
Q ss_pred ceeEEe----------------------e---------------------------cCCCEEEEEEeCCCCEEEEEeC--
Q 001621 109 SLACCL----------------------K---------------------------WESNITAFSVISGSHFMYIGDE-- 137 (1043)
Q Consensus 109 ~~l~~~----------------------~---------------------------~~~~Vtav~~sp~~~~l~vG~~-- 137 (1043)
.++... + ....-..+++-.||.|+++.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 111100 0 1112345677889999988764
Q ss_pred -CC---cEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC---CCeEEEEEccCC
Q 001621 138 -NG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEA 210 (1043)
Q Consensus 138 -dG---~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~---dg~I~lWd~~~~ 210 (1043)
.| .+|||+- ++.+....-. -.+--.+++|.|. |+++++.-. ...|.+|.- .|
T Consensus 232 ~~~~~R~iRVy~R---eG~L~stSE~---------------v~gLe~~l~WrPs--G~lIA~~q~~~~~~~VvFfEr-NG 290 (928)
T PF04762_consen 232 ETGSRRVIRVYSR---EGELQSTSEP---------------VDGLEGALSWRPS--GNLIASSQRLPDRHDVVFFER-NG 290 (928)
T ss_pred CCCceeEEEEECC---CceEEecccc---------------CCCccCCccCCCC--CCEEEEEEEcCCCcEEEEEec-CC
Confidence 34 3555542 2444311000 1122356899995 886665543 235666652 23
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
-.... +.+... .....|..+.|+ +|+..||....|. |++|-..+-
T Consensus 291 Lrhge-----F~l~~~--------------------~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 291 LRHGE-----FTLRFD--------------------PEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred cEeee-----EecCCC--------------------CCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCC
Confidence 22111 111100 015678999997 9999999988766 999987654
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.76 E-value=7e-07 Score=105.19 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=123.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEE-ECC--CcEEEEECCCC
Q 001621 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TND--NEIQVWSLESR 108 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~-s~d--~~I~vWdl~t~ 108 (1043)
...+...+|+|+|+.||.++.+ ..|++|+..+.+..........+..+.|+||+..|+.. +.+ ..|.+||+.++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 3347778899999999988755 47999998765443333334456678999998877644 433 36999999988
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
+...............++|++++|+..+. .|..+||.++...++... +. .+...+..+.|+|+
T Consensus 269 ~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~----l~------------~~~~~~~~~~~spd 332 (417)
T TIGR02800 269 QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR----LT------------FRGGYNASPSWSPD 332 (417)
T ss_pred CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----ee------------cCCCCccCeEECCC
Confidence 65443333444556789999998876554 555566766654443321 11 01234567789994
Q ss_pred CCCCEEEEEECCC---eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 188 SSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 188 d~g~~ll~~~~dg---~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
|++++.+..++ .|.+||+.++....... ........|+ |+|++
T Consensus 333 --g~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------------------------------~~~~~~p~~s-pdg~~ 378 (417)
T TIGR02800 333 --GDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------------------------------TGLDESPSFA-PNGRM 378 (417)
T ss_pred --CCEEEEEEccCCceEEEEEeCCCCCeEEccC-------------------------------CCCCCCceEC-CCCCE
Confidence 77788877765 78899988765432211 0112234685 99999
Q ss_pred EEEEEcCC
Q 001621 265 LAVGYIDG 272 (1043)
Q Consensus 265 l~tg~~DG 272 (1043)
|+..+.++
T Consensus 379 l~~~~~~~ 386 (417)
T TIGR02800 379 ILYATTRG 386 (417)
T ss_pred EEEEEeCC
Confidence 98888765
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.8e-05 Score=91.10 Aligned_cols=133 Identities=15% Similarity=0.225 Sum_probs=93.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEE
Q 001621 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1043)
Q Consensus 116 ~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~ 195 (1043)
.+....|+++.....|++.|+.||.++|.+++++...+...+..-+. ++ ..-....+|...|.-+.|+.. ...|-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s-nL-smNQtLeGH~~sV~vvTWNe~--~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS-NL-SMNQTLEGHNASVMVVTWNEN--NQKLTT 88 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc-cc-chhhhhccCcceEEEEEeccc--cccccc
Confidence 34677899999999999999999999999998765433322211000 00 000012468899999999974 444777
Q ss_pred EECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEE
Q 001621 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1043)
Q Consensus 196 ~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~ 275 (1043)
+..+|.|.+|=+-.+........ .-....|.+++|+ .+|+.|+..++||.|.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiN---------------------------nRnKSvV~SmsWn-~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMIN---------------------------NRNKSVVVSMSWN-LDGTKICIVYEDGAVI 140 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhh---------------------------CcCccEEEEEEEc-CCCcEEEEEEccCCEE
Confidence 78899999999877654211100 0015668899998 8999999999999998
Q ss_pred EEcCC
Q 001621 276 LWNTS 280 (1043)
Q Consensus 276 iWd~~ 280 (1043)
+=.+.
T Consensus 141 VGsvd 145 (1189)
T KOG2041|consen 141 VGSVD 145 (1189)
T ss_pred EEeec
Confidence 86664
No 240
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.75 E-value=2.4e-07 Score=97.82 Aligned_cols=215 Identities=10% Similarity=0.058 Sum_probs=156.5
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCC-ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~-l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
++++++..+|.+-...-|.|+.....+ -++.+++ ..|...|+.|+|+|.+..+++++.|.--+||.....
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl---------s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL---------SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceeh---------hhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 688999999999988899999887776 3444443 478899999999999999999999999999998432
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEE-EEeecCCCC
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL-FFTDDISGS 647 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l-~~~~~~~~~ 647 (1043)
.. ..+..++..|+..+++|.|+|.+..+|+|+....|.||-.+...-- ...++...+
T Consensus 88 ~~----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 88 GT----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred Ce----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 11 1122446679999999999999999999999999999998764321 122333335
Q ss_pred CCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEeccE
Q 001621 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIDSV 727 (1043)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~~~i 727 (1043)
.+.|+++.|.+. ..+|++|+.|+..+||.+.-+++=......|-
T Consensus 146 rStv~sldWhpn----------------------nVLlaaGs~D~k~rVfSayIK~Vdekpap~pW-------------- 189 (361)
T KOG1523|consen 146 RSTVTSLDWHPN----------------------NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPW-------------- 189 (361)
T ss_pred ccceeeeeccCC----------------------cceecccccCcceeEEEEeeeccccCCCCCCC--------------
Confidence 678999999643 35589999999999988665554333322222
Q ss_pred EEEeeCcccCCCcceeee--cccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeC
Q 001621 728 RLYSRKSVIQGNNKTVQK--VKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSL 781 (1043)
Q Consensus 728 rl~~~~~~~~g~~k~~~k--~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~sl 781 (1043)
|.+.++.. -.....+.|+.-+.+++.|.-|+=++.|+.+.+=+-
T Consensus 190 ----------gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 190 ----------GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ----------ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 22222211 001145567766777889999999999999987654
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.9e-07 Score=101.93 Aligned_cols=214 Identities=15% Similarity=0.114 Sum_probs=141.6
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec--CCCCCeEEEEEecC--CCEEEEEECCCcEEEEECC-
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLE- 106 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~--~~~~~V~~l~Fs~d--~~~Lvs~s~d~~I~vWdl~- 106 (1043)
.+|++.|..|-|...|.+|++|+.|-+|.+||-......+.+ .|...|-.-.|.|. ...+++.+.||.+++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 478899999999999999999999999999997655555443 34445555556552 2568999999999987754
Q ss_pred CCceeEEe---ecCCCEEEEEEeCCCCE-EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCC---CCe
Q 001621 107 SRSLACCL---KWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH---QPV 179 (1043)
Q Consensus 107 t~~~l~~~---~~~~~Vtav~~sp~~~~-l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~V 179 (1043)
++.+..+. +.++.|.-+++.|+..+ +++.++|+.+.-+++..+...... ++ + ..+. -..
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--~c-------r-----~~~~~~~v~L 284 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--VC-------R-----EADEKERVGL 284 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--ee-------e-----ccCCccceee
Confidence 44443222 35689999999998765 778889997754444333221110 00 0 1111 245
Q ss_pred EEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 180 ~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
..++.+|.+ ...+++++.|..+++||.+.-.....-+.-..+..+++. ....-.|+++.|+
T Consensus 285 ~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-----------------~d~~v~ITgl~Ys- 345 (559)
T KOG1334|consen 285 YTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-----------------EDDPVNITGLVYS- 345 (559)
T ss_pred eeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCcccc-----------------ccCcccceeEEec-
Confidence 778889974 446999999999999997643211000000000000100 0125679999996
Q ss_pred CCCCEEEEEEcCCcEEEEc
Q 001621 260 SSGSILAVGYIDGDILLWN 278 (1043)
Q Consensus 260 p~g~~l~tg~~DG~I~iWd 278 (1043)
.++.-|++.+.|-.|.++.
T Consensus 346 h~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFN 364 (559)
T ss_pred CCccceeeeecccceEEec
Confidence 8999999999999998884
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=5.2e-07 Score=97.71 Aligned_cols=190 Identities=13% Similarity=0.166 Sum_probs=139.1
Q ss_pred CEEEEEEcCCcEEEEcCCC----ceEEEecCCCCCeEEEEEecCCCEEEE-EECC--CcEEEEECCCCceeEEeec----
Q 001621 48 RLLAIATLDGRIKVIGGDG----IEGLLISPSQLPYKNLEFLQNQGFLIS-ITND--NEIQVWSLESRSLACCLKW---- 116 (1043)
Q Consensus 48 ~lLAvgt~dG~I~v~~~~~----~~~~~~~~~~~~V~~l~Fs~d~~~Lvs-~s~d--~~I~vWdl~t~~~l~~~~~---- 116 (1043)
..|.+|..+|.+.+|.... ...+.......++..+.-++...++++ ++.. +.+.+||+++.+.+.+-..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 4566778899999997642 122222333456777777776666666 7777 8999999999876655432
Q ss_pred ------CCCEEEEEEeCC--CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 117 ------ESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 117 ------~~~Vtav~~sp~--~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
+--++++.|-+. ...+++++..+.||+++....++-+.. ++ -...++.++..-|.
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~----fd------------~~E~~is~~~l~p~- 258 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ----FD------------FLENPISSTGLTPS- 258 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE----ec------------cccCcceeeeecCC-
Confidence 234678889888 778999999999998776554432221 11 12468899999995
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEE-eCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t 267 (1043)
|+++++|...|.+..||++.++.+.. +.+ -.+.|+++.-+ |.+.++++
T Consensus 259 -gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg-----------------------------~tGsirsih~h-p~~~~las 307 (412)
T KOG3881|consen 259 -GNFIYTGNTKGQLAKFDLRGGKLLGCGLKG-----------------------------ITGSIRSIHCH-PTHPVLAS 307 (412)
T ss_pred -CcEEEEecccchhheecccCceeeccccCC-----------------------------ccCCcceEEEc-CCCceEEe
Confidence 88899999999999999999988755 322 15678888775 99999999
Q ss_pred EEcCCcEEEEcCCCCCcc
Q 001621 268 GYIDGDILLWNTSTTAST 285 (1043)
Q Consensus 268 g~~DG~I~iWd~~tg~~~ 285 (1043)
++-|..|||+|+.+..++
T Consensus 308 ~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eccceeEEEeecccchhh
Confidence 999999999999885443
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=9.1e-07 Score=104.63 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=115.1
Q ss_pred CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE
Q 001621 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1043)
Q Consensus 57 G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~ 133 (1043)
.+|.+||.++........+...+...+|+||+.+|+.++.+ ..|.+||+.+++.......++...+..|+|+|+.++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 36888987665443333455688999999999999988743 469999999887654334455666889999999876
Q ss_pred E-EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCe--EEEEEccC
Q 001621 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NAL--VILWDVSE 209 (1043)
Q Consensus 134 v-G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~--I~lWd~~~ 209 (1043)
. .+.+|.-.+|.++...+.+.. +. .+.......+|+|+ |++|+.++. +|. |.++|+.+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~~----lt------------~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLTR----LT------------NHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeEE----Cc------------cCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCC
Confidence 4 455665444555544343321 11 11223456799994 877777664 444 55666666
Q ss_pred CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEcCCCCCc
Q 001621 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTTAS 284 (1043)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG---~I~iWd~~tg~~ 284 (1043)
++....... .....+.+|+ |+|+.|+..+.++ .|.+||+.++..
T Consensus 326 g~~~~lt~~------------------------------g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 326 GSAERLTFQ------------------------------GNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 554322100 1223357895 9999998776543 589999977653
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.67 E-value=2.3e-06 Score=100.88 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=115.7
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEE
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~v 134 (1043)
.|.++|.++............+....|+||+.+|+.+..+ ..|.+||+.+++........+.+.+++|+|+++.++.
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 5777776544332223344578889999999999887654 4799999999876554445566778999999997764
Q ss_pred -EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECC-C--eEEEEEccCC
Q 001621 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEA 210 (1043)
Q Consensus 135 -G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~d-g--~I~lWd~~~~ 210 (1043)
...++...+|.++...+.... +. .+........|+| +|++|+.++.. + .|.+||+.++
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~~----l~------------~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLTR----LT------------NGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred EECCCCCccEEEEECCCCCEEE----CC------------CCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 455565555666554443321 11 1112334568899 47777766543 3 5777787766
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC---cEEEEcCCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTTA 283 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG---~I~iWd~~tg~ 283 (1043)
+....... ...+....|+ |+|.+|+.+..++ .|.+||+.++.
T Consensus 313 ~~~~l~~~------------------------------~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 313 EVRRLTFR------------------------------GGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CEEEeecC------------------------------CCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 54322111 2334567896 9999999988876 78899987653
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=2.9e-06 Score=99.74 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCEEE---EEEcCC--cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC-CC----cEEEEECCC
Q 001621 38 ASILAFDHIQRLLA---IATLDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN----EIQVWSLES 107 (1043)
Q Consensus 38 v~~lafsp~g~lLA---vgt~dG--~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~-d~----~I~vWdl~t 107 (1043)
...=+|+|||+.++ +...+| .|++.+..+.+..............+|+|||.+|+..+. +| .+.+||+.+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 44568999997433 444444 577777765544332222334456799999988887663 22 345588775
Q ss_pred C---ceeEEeecC-CCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCC--CeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 108 R---SLACCLKWE-SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 108 ~---~~l~~~~~~-~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
+ +........ +..+..+++|||++|+..+ .+|..++|.++.+. ... ..+. .....+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~----~~lt------------~~~~~~~ 330 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP----RLLT------------KKYRNSS 330 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce----EEec------------cCCCCcc
Confidence 3 322222222 3456789999999777654 56777777765432 111 1111 1123456
Q ss_pred EEEecCCCCCCEEEEEECC---CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEE
Q 001621 181 GVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~d---g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w 257 (1043)
...|+|+ |++|+....+ ..|.+||+.+++....... ...+.+..|
T Consensus 331 ~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------------------------~~~~~~p~w 378 (428)
T PRK01029 331 CPAWSPD--GKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------------------------PENKESPSW 378 (428)
T ss_pred ceeECCC--CCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------------------------CCCccceEE
Confidence 7889994 8877765543 3689999988875432110 123456789
Q ss_pred ecCCCCEEEEEEc---CCcEEEEcCCCCC
Q 001621 258 ASSSGSILAVGYI---DGDILLWNTSTTA 283 (1043)
Q Consensus 258 ~sp~g~~l~tg~~---DG~I~iWd~~tg~ 283 (1043)
+ |||+.|+.... ...|.+||+.+++
T Consensus 379 S-pDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 379 A-IDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred C-CCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6 99998886543 3468888887654
No 246
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.66 E-value=2e-07 Score=101.45 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCC--C--ceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCce
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGD--G--IEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSL 110 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~--~--~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~ 110 (1043)
+..+.++|.+++||+++.+.+..+|+.. . .+..-...-...-..+.|..+....+.+..- ..+.+|+...+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 4566789999999999999998887642 2 2332222222233444555544455555444 4456666666766
Q ss_pred eEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 111 l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
.-.+.+-+.++.++++||++++++++.|..|||-.|+. +|.|.. +..+|..-|..++..++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--------~f~Ies--------fclGH~eFVS~isl~~~--- 205 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--------TFVIES--------FCLGHKEFVSTISLTDN--- 205 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--------ccchhh--------hccccHhheeeeeeccC---
Confidence 66666668999999999999999999999999877765 244432 23467778899998873
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeC
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGG 217 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~ 217 (1043)
..|++|+.|++|++||+.+++.+..+.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcccccc
Confidence 348999999999999999999876553
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.7e-06 Score=100.82 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCEEEEEEcC-C--cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEE-ECCCc--EEEEECCCCc
Q 001621 36 ATASILAFDHIQRLLAIATLD-G--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TNDNE--IQVWSLESRS 109 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~d-G--~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~-s~d~~--I~vWdl~t~~ 109 (1043)
..+...+|+|+|+.||..+.+ | .|++|+..+.+...............|+||+.+|+.+ +.++. |.+||+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 346678999999998877543 3 5888887665543222222334468999999988654 55554 8888998887
Q ss_pred eeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 110 LACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
..........+...+|+|++++++..+. +|..++|.++.+.++... +.. .........|+|+
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~------------~g~~~~~~~~SpD- 360 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTF------------EGEQNLGGSITPD- 360 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----Eec------------CCCCCcCeeECCC-
Confidence 5443333455677899999998876554 567778888765554331 110 0011234588994
Q ss_pred CCCEEEEEEC-CC--eEEEEEccCCeE
Q 001621 189 SGNRVLIAYE-NA--LVILWDVSEAQI 212 (1043)
Q Consensus 189 ~g~~ll~~~~-dg--~I~lWd~~~~~~ 212 (1043)
|+.++.... ++ .|.++|+.+++.
T Consensus 361 -G~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 361 -GRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred -CCEEEEEEecCCceEEEEEECCCCCe
Confidence 776665544 44 455677777654
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-05 Score=89.92 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEE-----EECCC-----cEEEEECCC
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-----ITNDN-----EIQVWSLES 107 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs-----~s~d~-----~I~vWdl~t 107 (1043)
.+..+|+++|+++|.++ ++.|+|++......++..... .+.+|.|+|-+.+|.+ ...++ .+++|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 67788999999999986 568999998766444444334 8899999998888765 22333 367999999
Q ss_pred CceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 108 RSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 108 ~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
+.....+... ..-++..|+.|..+.+ -...+.+++++.+..+.... +-+...|..+.++|
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~------------------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH------------------KLSVSGITMLSLSP 175 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceee------------------eeeccceeeEEecC
Confidence 7776666533 2226788888765433 12234566665544221111 12346688888888
Q ss_pred CCCCCEEEE-----EECCCeEEEEEccCC
Q 001621 187 NSSGNRVLI-----AYENALVILWDVSEA 210 (1043)
Q Consensus 187 ~d~g~~ll~-----~~~dg~I~lWd~~~~ 210 (1043)
......|++ .+.-+.|+||-....
T Consensus 176 gp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 176 GPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred CCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 523333333 122347888887643
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4.1e-06 Score=99.14 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEE-EECCC--cEEEEECCCC
Q 001621 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-ITNDN--EIQVWSLESR 108 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs-~s~d~--~I~vWdl~t~ 108 (1043)
...+...+|+|+|+.||..+.+ ..|++|+..+.+..........+....|+||+.+|+. .+.++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3457888999999998876644 3688899876554332222344557899999988874 44444 6888999988
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
+...........+...|+|+++.++..+ .+|..++|.++...+.... +.. . ........|+|+
T Consensus 278 ~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~----------~--~~~~~~~~~Spd 341 (430)
T PRK00178 278 QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTF----------V--GNYNARPRLSAD 341 (430)
T ss_pred CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eec----------C--CCCccceEECCC
Confidence 7544333345566788999999876554 4566667777665444331 110 0 011234678994
Q ss_pred CCCCEEEEEEC-CC--eEEEEEccCCeE
Q 001621 188 SSGNRVLIAYE-NA--LVILWDVSEAQI 212 (1043)
Q Consensus 188 d~g~~ll~~~~-dg--~I~lWd~~~~~~ 212 (1043)
|+.++.... ++ .|.+||+.+++.
T Consensus 342 --g~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 342 --GKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred --CCEEEEEEccCCceEEEEEECCCCCE
Confidence 776766554 33 578899887764
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.63 E-value=1.2e-05 Score=90.49 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=133.4
Q ss_pred EcCCCCEEEEEEc----------CCcEEEEcCCCceEEEecCCCC--------CeEEEEEecCCCEEEEEE-C-CCcEEE
Q 001621 43 FDHIQRLLAIATL----------DGRIKVIGGDGIEGLLISPSQL--------PYKNLEFLQNQGFLISIT-N-DNEIQV 102 (1043)
Q Consensus 43 fsp~g~lLAvgt~----------dG~I~v~~~~~~~~~~~~~~~~--------~V~~l~Fs~d~~~Lvs~s-~-d~~I~v 102 (1043)
++|+++.|+++.. +..|.|||....+.+..++... .-..++++||+++|+... . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998888876 6899999998888775544211 233788999999998877 3 799999
Q ss_pred EECCCCceeEEeecCCCE--------------------------------EEEE-E-------------eC-CCCEEEEE
Q 001621 103 WSLESRSLACCLKWESNI--------------------------------TAFS-V-------------IS-GSHFMYIG 135 (1043)
Q Consensus 103 Wdl~t~~~l~~~~~~~~V--------------------------------tav~-~-------------sp-~~~~l~vG 135 (1043)
.|+.+++.+.++.-++.. .... | .+ ++.++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 999999988766432110 0101 1 12 56666666
Q ss_pred eCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE----------CCCeEEEE
Q 001621 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY----------ENALVILW 205 (1043)
Q Consensus 136 ~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~----------~dg~I~lW 205 (1043)
.+ |+|.+.++..+..... .++.+.. ..+. -..-..+.+.-++++|+ ++++.++. ..+.|.++
T Consensus 213 ~e-G~V~~id~~~~~~~~~-~~~~~~~--~~~~--~~~wrP~g~q~ia~~~d--g~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFL-PAIEAFT--EAEK--ADGWRPGGWQQVAYHRA--RDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred cC-CeEEEEecCCCcceec-ceeeecc--cccc--ccccCCCcceeEEEcCC--CCEEEEEecCCccccccCCCCEEEEE
Confidence 66 6666665443322111 0111110 0000 00001233445899994 77777742 22479999
Q ss_pred EccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCC-EEEEEE-cCCcEEEEcCCCCC
Q 001621 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 283 (1043)
Q Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~-~l~tg~-~DG~I~iWd~~tg~ 283 (1043)
|..+++.+..+.- ...+..++++ |||+ +|++.. .+++|.+.|..+++
T Consensus 285 D~~t~kvi~~i~v------------------------------G~~~~~iavS-~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 285 DAKTGKRLRKIEL------------------------------GHEIDSINVS-QDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ECCCCeEEEEEeC------------------------------CCceeeEEEC-CCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999998876632 3567889996 9999 887666 58999999998887
Q ss_pred ccc
Q 001621 284 STK 286 (1043)
Q Consensus 284 ~~~ 286 (1043)
.+.
T Consensus 334 ~i~ 336 (352)
T TIGR02658 334 ELS 336 (352)
T ss_pred EEe
Confidence 554
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.59 E-value=3.6e-05 Score=88.13 Aligned_cols=209 Identities=17% Similarity=0.263 Sum_probs=135.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEc-CCcEEEEcCCC-ceEE-----Eec----C-----CCCCeEEEEEecCCCEEEEEEC-C
Q 001621 35 PATASILAFDHIQRLLAIATL-DGRIKVIGGDG-IEGL-----LIS----P-----SQLPYKNLEFLQNQGFLISITN-D 97 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~-dG~I~v~~~~~-~~~~-----~~~----~-----~~~~V~~l~Fs~d~~~Lvs~s~-d 97 (1043)
......++++|++++|+++.. +|.|.+|+... .... ..+ + .....-++.|+||+++|++.+. .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 345677999999999999985 79999998753 2211 111 1 1235678999999999998874 4
Q ss_pred CcEEEEECCCCc--ee--EEe--ecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccC
Q 001621 98 NEIQVWSLESRS--LA--CCL--KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1043)
Q Consensus 98 ~~I~vWdl~t~~--~l--~~~--~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1043)
+.|.+|++.... +. ..+ .....-..++|+|+++++|+..+ +++|.+++++...+.+... ..+.. +..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~-~~~~~--~~~--- 239 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI-QTIST--LPE--- 239 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEES--CET---
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE-EEeee--ccc---
Confidence 689999998765 32 233 23467899999999999998877 4669999998656655421 11111 000
Q ss_pred CCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEcc--CCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 171 ~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
..........|.++| +|++|.++.+ .+.|.+|++. ++++...-. .+ .
T Consensus 240 -~~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------~~---------~--------- 289 (345)
T PF10282_consen 240 -GFTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------VP---------T--------- 289 (345)
T ss_dssp -TSCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------EE---------E---------
T ss_pred -cccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------Ee---------C---------
Confidence 001123678899999 4887777654 5689999994 344322110 00 0
Q ss_pred CCCCeEEEEEecCCCCEEEEEEc-CCcEEEEcCC
Q 001621 248 EEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~tg~~-DG~I~iWd~~ 280 (1043)
.......+.++ |+|++|+++.. ++.|.+|++.
T Consensus 290 ~G~~Pr~~~~s-~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 290 GGKFPRHFAFS-PDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCccEEEEe-CCCCEEEEEecCCCeEEEEEEe
Confidence 02346788886 99999998885 6789988763
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=9.7e-06 Score=92.57 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=123.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeec----CCCEEEEEE--------------------eCCCCEEEEEeCCCcEE
Q 001621 87 NQGFLISITNDNEIQVWSLESRSLACCLKW----ESNITAFSV--------------------ISGSHFMYIGDENGLMS 142 (1043)
Q Consensus 87 d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~----~~~Vtav~~--------------------sp~~~~l~vG~~dG~v~ 142 (1043)
...|++..+.||.+++||..++++...+.. .+..++..+ +-+...++.|+..|.|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v- 82 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV- 82 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE-
Confidence 346788888999999999999988777643 233333322 2334477889999976
Q ss_pred EEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccc
Q 001621 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1043)
Q Consensus 143 v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~ 222 (1043)
|-|+...+++. +++.. ..|.++|.++.++-+ .+. +.+++.|+.+..|+..+.+.++.+..
T Consensus 83 -~~ys~~~g~it---~~~st----------~~h~~~v~~~~~~~~-~~c-iyS~~ad~~v~~~~~~~~~~~~~~~~---- 142 (541)
T KOG4547|consen 83 -LLYSVAGGEIT---AKLST----------DKHYGNVNEILDAQR-LGC-IYSVGADLKVVYILEKEKVIIRIWKE---- 142 (541)
T ss_pred -EEEEecCCeEE---EEEec----------CCCCCcceeeecccc-cCc-eEecCCceeEEEEecccceeeeeecc----
Confidence 66777667766 44432 357889999999876 464 89999999999999999998887643
Q ss_pred cccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCccccccCCCCCcceeeecc
Q 001621 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS 302 (1043)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~~~~~~~~~i~~l~~~ 302 (1043)
....+.++|.+ |||.++++++ +.|++||+++.+..+.-+
T Consensus 143 -------------------------~~~~~~sl~is-~D~~~l~~as--~~ik~~~~~~kevv~~ft------------- 181 (541)
T KOG4547|consen 143 -------------------------QKPLVSSLCIS-PDGKILLTAS--RQIKVLDIETKEVVITFT------------- 181 (541)
T ss_pred -------------------------CCCccceEEEc-CCCCEEEecc--ceEEEEEccCceEEEEec-------------
Confidence 15678899996 9999999887 689999999987665322
Q ss_pred cccCCcceEEEEeec
Q 001621 303 SAERRLPVIVLHWST 317 (1043)
Q Consensus 303 ~~~~~~~i~~l~w~~ 317 (1043)
.|..||..+.+..
T Consensus 182 --gh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 182 --GHGSPVRTLSFTT 194 (541)
T ss_pred --CCCcceEEEEEEE
Confidence 2445777776654
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.56 E-value=3.2e-07 Score=96.88 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=126.0
Q ss_pred CCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE
Q 001621 36 ATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 36 ~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s-~d~~I~vWdl~t~~~l~ 112 (1043)
.+|.-+-+..+. .+|.++..|+.|.+|+..+.+...... +.+++..++|+|||+.++..+ -|-+|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 346667777765 467788899999999998888777665 467999999999997666555 58899999999988776
Q ss_pred EeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 113 ~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
.-.....+..++|.|+|+++++.+..-...-+.+.. .-.|. +-+. ...+.-..+.+.|+|+ |+
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~----------c~~W~-ll~~---f~~dT~DltgieWsPd--g~- 191 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS----------CKAWI-LLKE---FKLDTIDLTGIEWSPD--GN- 191 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHh----------hHHHH-HHHh---cCCCcccccCceECCC--Cc-
Confidence 555557789999999999998876532110000000 00000 0011 1123345688999994 65
Q ss_pred EEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC
Q 001621 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1043)
Q Consensus 193 ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG 272 (1043)
.+.+||---.-.+. .| | ..-.+..+.|+ |.++.|+.|+.|+
T Consensus 192 --------~laVwd~~Leykv~--aY-------e---------------------~~lG~k~v~ws-P~~qflavGsyD~ 232 (447)
T KOG4497|consen 192 --------WLAVWDNVLEYKVY--AY-------E---------------------RGLGLKFVEWS-PCNQFLAVGSYDQ 232 (447)
T ss_pred --------EEEEecchhhheee--ee-------e---------------------eccceeEEEec-cccceEEeeccch
Confidence 34567642211111 11 1 12457788996 9999999999999
Q ss_pred cEEEEcC
Q 001621 273 DILLWNT 279 (1043)
Q Consensus 273 ~I~iWd~ 279 (1043)
.+|+-+-
T Consensus 233 ~lrvlnh 239 (447)
T KOG4497|consen 233 MLRVLNH 239 (447)
T ss_pred hhhhhce
Confidence 9988553
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=8.5e-06 Score=96.44 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=114.4
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEE
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~v 134 (1043)
+|.++|.++........+...+....|+||+.+|+.++.+ ..|.+||+.+++........+.+.+..|+|+|++++.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4777777655443333455688999999999999887644 3699999999876544444566678999999998874
Q ss_pred -EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001621 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1043)
Q Consensus 135 -G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg--~I~lWd~~~~ 210 (1043)
...+|...+|.++.+.+.... +. .+........|+|+ |+.++..+. +| .|.++|+.++
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~----lt------------~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSR----VT------------NHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEccCCCceEEEEECCCCCeEE----cc------------cCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCC
Confidence 455666566666665444331 11 01123455789994 777776654 33 5677787777
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC-C--cEEEEcCCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTSTTA 283 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D-G--~I~iWd~~tg~ 283 (1043)
+....... ........|+ |+|+.|+..+.+ + .|.+||+.++.
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 322 RAERVTFV------------------------------GNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CEEEeecC------------------------------CCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCC
Confidence 64322100 1112345785 999999887753 3 47888987765
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=6.9e-05 Score=84.14 Aligned_cols=162 Identities=10% Similarity=0.156 Sum_probs=107.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC---------------CC
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---------------DN 98 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~---------------d~ 98 (1043)
..-.+..+.|||.|.+|++.+.. .|.+|+....-.+..+.+ ..|+.+.|+|++.||++=+. ++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 34457889999999999998765 588999877666655554 56999999999999998653 34
Q ss_pred cEEEEECCCCceeEEeecC-CC--EE-EEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCC
Q 001621 99 EIQVWSLESRSLACCLKWE-SN--IT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~~~~-~~--Vt-av~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1043)
.+.|||+.++.++.++... .. .+ -+.|+-+..|++--. ..++.|+.+ + ..+...|+...
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t--~n~~~~p~~~l------------- 171 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-T--DNIEEHPFKNL------------- 171 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-C--CccccCchhhc-------------
Confidence 5999999999999988643 22 33 567777777655221 223555554 2 22222222211
Q ss_pred CCCCeEEEEecCCCCCCEEEE-----EECCCeEEEEEccCCeEEE
Q 001621 175 SHQPVVGVLPHPNSSGNRVLI-----AYENALVILWDVSEAQIIF 214 (1043)
Q Consensus 175 ~~~~V~sl~~sp~d~g~~ll~-----~~~dg~I~lWd~~~~~~~~ 214 (1043)
....|...+|+|..++..|+. ....+.+++|.+..+..+.
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~ 216 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV 216 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee
Confidence 124567777888644442222 2346788999988766654
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=0.00026 Score=81.12 Aligned_cols=210 Identities=16% Similarity=0.164 Sum_probs=133.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEEc----CCcEEEEcCCC--ceE--EEecC-CCCCeEEEEEecCCCEEEEEE-CCCcEEEE
Q 001621 34 IPATASILAFDHIQRLLAIATL----DGRIKVIGGDG--IEG--LLISP-SQLPYKNLEFLQNQGFLISIT-NDNEIQVW 103 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~----dG~I~v~~~~~--~~~--~~~~~-~~~~V~~l~Fs~d~~~Lvs~s-~d~~I~vW 103 (1043)
.....+-|+++|++++|.+... +|.|..|.... .+. +-..+ ....-..+++++++++|+++. .+|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 4556788999999999999987 47898887543 232 22222 344567899999999999987 58999999
Q ss_pred ECCC-CceeEE---ee-----------cCCCEEEEEEeCCCCEEEEEeCC-CcEEEEEEeCCCCeEeee-ceeecccccc
Q 001621 104 SLES-RSLACC---LK-----------WESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQL-PYNISADALS 166 (1043)
Q Consensus 104 dl~t-~~~l~~---~~-----------~~~~Vtav~~sp~~~~l~vG~~d-G~v~v~~~d~~~~~l~~~-~~~i~~~~~~ 166 (1043)
++.. +.+... +. ......++.++|+++++++.+-. ..|.+++++...+++... ...+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~------ 188 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV------ 188 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC------
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc------
Confidence 9987 443322 21 12467899999999999987543 347777776655445420 0111
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEcc--CCeEEEEeCCcccccccccccCCCCCCCCcccCcc
Q 001621 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1043)
Q Consensus 167 ~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (1043)
.....-..+.|+|+ ++++.+..+ ++.|.+|++. ++........ . ..+ .+ ..+
T Consensus 189 -------~~G~GPRh~~f~pd--g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-----~-~~~---~~---~~~---- 243 (345)
T PF10282_consen 189 -------PPGSGPRHLAFSPD--GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-----S-TLP---EG---FTG---- 243 (345)
T ss_dssp -------STTSSEEEEEE-TT--SSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----E-SCE---TT---SCS----
T ss_pred -------ccCCCCcEEEEcCC--cCEEEEecCCCCcEEEEeecccCCceeEEEEe-----e-ecc---cc---ccc----
Confidence 12345689999994 777766654 6789999998 4533221100 0 000 10 000
Q ss_pred CCCCCCCCeEEEEEecCCCCEEEEEEc-CCcEEEEcCC
Q 001621 244 EHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1043)
Q Consensus 244 ~~~~~~~~V~sl~w~sp~g~~l~tg~~-DG~I~iWd~~ 280 (1043)
......+.++ |||++|.+... +++|.++++.
T Consensus 244 -----~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 -----ENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -----SSSEEEEEE--TTSSEEEEEECTTTEEEEEEEC
T ss_pred -----cCCceeEEEe-cCCCEEEEEeccCCEEEEEEEe
Confidence 2356778885 99999888764 6789999984
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.54 E-value=2.1e-06 Score=103.45 Aligned_cols=196 Identities=15% Similarity=0.083 Sum_probs=147.0
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEECCC-Cce
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL-----PYKNLEFLQNQGFLISITNDNEIQVWSLES-RSL 110 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~-----~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t-~~~ 110 (1043)
.+....+.-....+|+++.+..+-+|+..+........+.. +..-+.++++.-++++++.-|.|.+|+..- ..+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 34444455567889999999999999988776665555433 334455777878899999999999999873 334
Q ss_pred eEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC
Q 001621 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 111 l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g 190 (1043)
.....+++.|-++.++-+|.++++.++|.++|+|.++..+- . .. ..-+|..+|+.+.|+|.
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~--~-----~~---------~~fgHsaRvw~~~~~~n--- 229 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV--L-----GC---------TGFGHSARVWACCFLPN--- 229 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc--c-----Cc---------ccccccceeEEEEeccc---
Confidence 43444568999999999999999999999999999987321 0 00 11257889999999983
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
+++++++|.+.++|+....+.. .+.. | ..+.|..+... ++...++|++.
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~-~y~~-------h---------------------~g~~iw~~~~~-~~~~~~vT~g~ 278 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLE-VYDE-------H---------------------SGKGIWKIAVP-IGVIIKVTGGN 278 (967)
T ss_pred -eeEEeccceEEEEEecccceeh-hhhh-------h---------------------hhcceeEEEEc-CCceEEEeecc
Confidence 6999999999999976544332 2211 1 14668888885 88889999999
Q ss_pred CCcEEEEcCCCC
Q 001621 271 DGDILLWNTSTT 282 (1043)
Q Consensus 271 DG~I~iWd~~tg 282 (1043)
||.+++|+....
T Consensus 279 Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 279 DSTLKLWDLNGR 290 (967)
T ss_pred Ccchhhhhhhcc
Confidence 999999998654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=4.1e-07 Score=113.69 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=127.9
Q ss_pred CCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEE
Q 001621 482 VPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVY 561 (1043)
Q Consensus 482 ~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~ 561 (1043)
++.++.+ .-+|.-.+|+||+.||+||+|.-..+. .++++. ..|. ..|+.+.|+.+|..+.++..||.+-
T Consensus 2208 v~~v~r~-~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~r-------t~g~-s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2208 VENVRRM-TSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFR-------TAGN-SRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cCceeee-cCCCCCceEEecCCCceEEEEeccCCC--eEEEee-------ccCc-chhhhhhhcccCCceeeeccCCcee
Confidence 3334434 456777899999999999999988877 333332 2344 7899999999999999999999999
Q ss_pred EEEecCCCcc---------cceeeecc---------CCCceeeecCC-CcceeeEEecCCCCCEEEEEEcCCCcEEEEEe
Q 001621 562 IYNLNGSLDA---------KNFLFVLE---------TKSEVHALPEG-KISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1043)
Q Consensus 562 i~~~~~~~~~---------~~~~f~~~---------~~~~~~~~~~~-~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs 622 (1043)
+|.....+.. ..+.|+.. ..+.+..+..- .+-.+... ..|.+.+|++++-|.-+++.+|+
T Consensus 2277 l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2277 LWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred ecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecC
Confidence 9998754321 12344431 11222222221 11111222 67999999999999999999999
Q ss_pred CCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 623 ~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
.+|.|++||++..+++|+... +. .+.++++|+..|.|.||+...-
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~----------~~-------------------------~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA----------LD-------------------------TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh----------hh-------------------------hhheeeccCcccceEEEEcccc
Confidence 999999999998777655321 11 1245899999999999998776
Q ss_pred CeeecCC
Q 001621 703 NMISSSP 709 (1043)
Q Consensus 703 ~~l~~~~ 709 (1043)
..+...|
T Consensus 2401 ~ll~~~p 2407 (2439)
T KOG1064|consen 2401 GLLHTFP 2407 (2439)
T ss_pred chhhcCc
Confidence 6666654
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.51 E-value=2.7e-06 Score=90.75 Aligned_cols=205 Identities=16% Similarity=0.230 Sum_probs=151.5
Q ss_pred ecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc-eEE----EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 001621 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGL----LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1043)
Q Consensus 30 ~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~-~~~----~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWd 104 (1043)
..+-.|+.+++++|.+.-..|.+|-..|+|.-|..... +.. .-..|...|..+-|+....++++.+.|..+.---
T Consensus 63 I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 63 IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 34567899999999999999999999999998865321 111 1223567899999998878899999888876555
Q ss_pred CCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 105 l~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
.+.+..+..+.....-+++.++-. +.++|...|.|.+..+......+. +++ .+|..++++++|
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i---~~~------------~~h~~~~~~l~W 205 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI---TTF------------NGHTGEVTCLKW 205 (404)
T ss_pred eccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceE---EEE------------cCcccceEEEEE
Confidence 677777776665544455555444 888999999888777765443332 121 357889999999
Q ss_pred cCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCE
Q 001621 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~ 264 (1043)
.|. ++ +|.++++|..+.+||+--.+-+...-+ .+...|..+++. +--..
T Consensus 206 d~~-~~-~LfSg~~d~~vi~wdigg~~g~~~el~----------------------------gh~~kV~~l~~~-~~t~~ 254 (404)
T KOG1409|consen 206 DPG-QR-LLFSGASDHSVIMWDIGGRKGTAYELQ----------------------------GHNDKVQALSYA-QHTRQ 254 (404)
T ss_pred cCC-Cc-EEEeccccCceEEEeccCCcceeeeec----------------------------cchhhhhhhhhh-hhhee
Confidence 996 34 689999999999999976654432211 136678888876 77789
Q ss_pred EEEEEcCCcEEEEcCCCC
Q 001621 265 LAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 265 l~tg~~DG~I~iWd~~tg 282 (1043)
+.++++||-|.+|+.+..
T Consensus 255 l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eeeccCCCeEEEEeccce
Confidence 999999999999998653
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=0.00032 Score=79.95 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEe---cCccEEEEEecCCCcccce
Q 001621 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN---EFGLVYIYNLNGSLDAKNF 574 (1043)
Q Consensus 498 l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~---~dG~V~i~~~~~~~~~~~~ 574 (1043)
++-|..=-+|.|+|..+.- ++. -..++=+++-|+|.|++++.++ ..|.|-|||+......
T Consensus 287 VvyGfMPAkvtifnlr~~~---v~d-----------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i--- 349 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRGKP---VFD-----------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI--- 349 (566)
T ss_pred EEEecccceEEEEcCCCCE---eEe-----------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc---
Confidence 3445556678899887643 222 2335788999999999998875 4599999999763211
Q ss_pred eeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeC------CCeEEEEEcCCceEEEEeecCCCCC
Q 001621 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLSVLFFTDDISGSS 648 (1043)
Q Consensus 575 ~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~------dg~V~vwD~~~~~~l~~~~~~~~~~ 648 (1043)
..+. -..-|-..|||||+++.+++. |..++||++.+ +.+|..+..
T Consensus 350 ----------------------~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f~---- 400 (566)
T KOG2315|consen 350 ----------------------AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMFK---- 400 (566)
T ss_pred ----------------------cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhhh----
Confidence 1112 233567899999999988876 56689999875 455544441
Q ss_pred CCeEEEEEEee
Q 001621 649 SPIISMTWTEF 659 (1043)
Q Consensus 649 ~~V~sl~fs~~ 659 (1043)
+....+.|.|+
T Consensus 401 sEL~qv~W~P~ 411 (566)
T KOG2315|consen 401 SELLQVEWRPF 411 (566)
T ss_pred HhHhheeeeec
Confidence 24556777654
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=1e-05 Score=95.84 Aligned_cols=177 Identities=12% Similarity=0.091 Sum_probs=111.5
Q ss_pred cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEE
Q 001621 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~v 134 (1043)
+|.++|.++............+....|+||+.+|+.++.+ ..|.+||+.+++.......++...+.+++|+|+.++.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 5666676554433333445688899999999988877643 3589999998875433334455567899999997764
Q ss_pred -EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CC--eEEEEEccCC
Q 001621 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1043)
Q Consensus 135 -G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg--~I~lWd~~~~ 210 (1043)
...+|...||.++.+.++... +. .+........|+|+ |+.++..+. +| .|.++|+.++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~~----lt------------~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALTR----IT------------RHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeEE----Cc------------cCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCC
Confidence 567787777777765554331 11 11223466789994 776766554 34 4666677766
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc-CCc--EEEEcCCCCC
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTSTTA 283 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~-DG~--I~iWd~~tg~ 283 (1043)
+....... .....+.+|+ |||++|+..+. ++. |.++|+.++.
T Consensus 341 ~~~~Lt~~------------------------------g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 341 KVSRLTFE------------------------------GEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CEEEEecC------------------------------CCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCC
Confidence 64322100 1112345785 99999887665 443 4556766654
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.50 E-value=7.8e-06 Score=93.34 Aligned_cols=187 Identities=13% Similarity=0.151 Sum_probs=134.6
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCceEEEecC----CCCCeEEEEE--------------------ecCCCEEEEEECCCc
Q 001621 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISP----SQLPYKNLEF--------------------LQNQGFLISITNDNE 99 (1043)
Q Consensus 44 sp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~----~~~~V~~l~F--------------------s~d~~~Lvs~s~d~~ 99 (1043)
+|.+.++|..+.||.+++|+....+..-.+. -.+...++.| +.|...|+-+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 5677899999999999999975433322211 1223333333 223345666778899
Q ss_pred EEEEECCCCceeEEee---cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCC
Q 001621 100 IQVWSLESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1043)
Q Consensus 100 I~vWdl~t~~~l~~~~---~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1043)
|.++++..++....+. +.++|+++....+...+|+++.|+.+-.|.... +++. ++- ....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~----~~~-----------~~~~ 144 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVII----RIW-----------KEQK 144 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceee----eee-----------ccCC
Confidence 9999999999988886 348999999999999999999999887776554 2221 221 1223
Q ss_pred CCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEE
Q 001621 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1043)
Q Consensus 177 ~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~ 256 (1043)
..+.+++++|+ |..+++|+ +.|.+||+++.+++.+|.+ |..+|.++.
T Consensus 145 ~~~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftg-----------------------------h~s~v~t~~ 191 (541)
T KOG4547|consen 145 PLVSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTG-----------------------------HGSPVRTLS 191 (541)
T ss_pred CccceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecC-----------------------------CCcceEEEE
Confidence 56889999994 88787775 5799999999999999876 377899999
Q ss_pred EecCC-----CCEEEEEE-cCCcEEEEcCCC
Q 001621 257 WASSS-----GSILAVGY-IDGDILLWNTST 281 (1043)
Q Consensus 257 w~sp~-----g~~l~tg~-~DG~I~iWd~~t 281 (1043)
|. .+ |.+++++. .+..|.+|-+..
T Consensus 192 f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 192 FT-TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EE-EeccccccceeeeccccccceeEEEEEc
Confidence 86 66 66666654 356677887644
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=7.9e-05 Score=84.23 Aligned_cols=105 Identities=11% Similarity=0.211 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC-----------CCcEEEEECC
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-----------DNEIQVWSLE 106 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~-----------d~~I~vWdl~ 106 (1043)
-+-+.|||-|.+|++=-.- -|.+|+..+...+..+.| ..|..+.|||+..|||+-+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 3668999999999987654 488999887766655554 45999999999999999763 2579999999
Q ss_pred CCceeEEeec---CCC-EEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001621 107 SRSLACCLKW---ESN-ITAFSVISGSHFMYIGDENGLMSVIK 145 (1043)
Q Consensus 107 t~~~l~~~~~---~~~-Vtav~~sp~~~~l~vG~~dG~v~v~~ 145 (1043)
||.+..++.. +.. -.-+.+|.|++|+|--..++ |.|+.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyE 332 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYE 332 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEe
Confidence 9998888764 222 23568999999998766665 66643
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=3.1e-05 Score=81.71 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC-------CCCeEEEEEecCC------CEEEEEECCCcEEEEE
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQNQ------GFLISITNDNEIQVWS 104 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~-------~~~V~~l~Fs~d~------~~Lvs~s~d~~I~vWd 104 (1043)
=..++|+||+.+||.+...|+|+|||.-+.+.....+. ...|..+.|.+.. -.|++.+-+|.++-+-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 36699999999999999999999999887665543332 2478888887642 2578888888887776
Q ss_pred CCCC-----ceeEEeec----CCCEEEEEEeCCCCEEEEEeCC
Q 001621 105 LESR-----SLACCLKW----ESNITAFSVISGSHFMYIGDEN 138 (1043)
Q Consensus 105 l~t~-----~~l~~~~~----~~~Vtav~~sp~~~~l~vG~~d 138 (1043)
+..+ +..+++.+ +..|+++.++|.-++|++|+..
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 5322 34455543 4689999999999999888653
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.42 E-value=0.00084 Score=77.96 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=114.7
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEE
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~ 125 (1043)
.+..+.+++.+|.|+.||..+.+.++...-...+..- ...+++.++.++.++.+..+|.++|+.+......+.+.+.-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 3678889999999999998877777655433322211 112457788888999999999999999887766554433222
Q ss_pred eCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEE
Q 001621 126 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1043)
Q Consensus 126 sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lW 205 (1043)
. .++.+++++.+|.+..+ |...++.. |+..... ... .......++. . ++ .++++..+|.+..+
T Consensus 143 v-~~~~v~v~~~~g~l~a~--d~~tG~~~---W~~~~~~--~~~-~~~~~~sp~~----~---~~-~v~~~~~~g~v~al 205 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTAL--DAATGERL---WTYSRVT--PAL-TLRGSASPVI----A---DG-GVLVGFAGGKLVAL 205 (377)
T ss_pred E-ECCEEEEECCCCeEEEE--EcCCCcee---eEEccCC--Cce-eecCCCCCEE----E---CC-EEEEECCCCEEEEE
Confidence 1 35678888889977554 44444443 2222100 000 0000111211 1 23 47788888999999
Q ss_pred EccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCe-EEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI-SALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V-~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
|.++++.+..... ..+ ..... . .+...+ .+... .+..+++++.+|.+..||..+|+
T Consensus 206 d~~tG~~~W~~~~-------~~~------~g~~~--~----~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 206 DLQTGQPLWEQRV-------ALP------KGRTE--L----ERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred EccCCCEeeeecc-------ccC------CCCCc--h----hhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCc
Confidence 9999887644321 000 00000 0 000001 11112 24577788889999999987764
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.41 E-value=4.9e-06 Score=88.88 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=65.7
Q ss_pred CcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCC
Q 001621 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1043)
Q Consensus 591 ~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~ 670 (1043)
+++.....+++|.++|++++|.+..+.|.+|+.|..|.+||+-..+-+.... -++..-|..+.+-+.-
T Consensus 185 ~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el--~gh~~kV~~l~~~~~t---------- 252 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL--QGHNDKVQALSYAQHT---------- 252 (404)
T ss_pred cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee--ccchhhhhhhhhhhhh----------
Confidence 3445556689999999999999999999999999999999997654432111 1355677777775432
Q ss_pred CCCCCCCCCCCceEEEEeccCceEEEEcC
Q 001621 671 HSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 671 ~~~~~~~~~~~~~~l~~gt~dg~I~~~d~ 699 (1043)
..|++...||.|.+||-
T Consensus 253 ------------~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 253 ------------RQLISCGEDGGIVVWNM 269 (404)
T ss_pred ------------eeeeeccCCCeEEEEec
Confidence 33999999999999994
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.40 E-value=0.00072 Score=76.27 Aligned_cols=121 Identities=8% Similarity=0.032 Sum_probs=77.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceee-EEecCCCCCeEEEEEecCCCeEEEEecC----------ccEEE
Q 001621 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQG-IEVAGSRAPVSTLSFCFINSSLAVGNEF----------GLVYI 562 (1043)
Q Consensus 494 ~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~-v~~~~~~~~V~~l~fspd~~~La~g~~d----------G~V~i 562 (1043)
+++++..... |+|.+-|++.........+...... ..-.-..+.+.-++++|+++.|.+.... +.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 6666666665 9999999766543222221110000 0000122345559999999999885422 46888
Q ss_pred EEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceEEEE
Q 001621 563 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGF-ECGRVAVLDMNLLSVLFF 640 (1043)
Q Consensus 563 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~-~lA~Gs-~dg~V~vwD~~~~~~l~~ 640 (1043)
+|..+.... .. ..-...+..|++||||+ +|.+.. .++.|.++|+.+++++.+
T Consensus 284 iD~~t~kvi-------------------------~~-i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 284 VDAKTGKRL-------------------------RK-IELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EECCCCeEE-------------------------EE-EeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 887664321 11 11244789999999999 777777 578899999999999877
Q ss_pred e
Q 001621 641 T 641 (1043)
Q Consensus 641 ~ 641 (1043)
.
T Consensus 338 i 338 (352)
T TIGR02658 338 V 338 (352)
T ss_pred e
Confidence 5
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=2.8e-06 Score=90.59 Aligned_cols=220 Identities=17% Similarity=0.217 Sum_probs=137.0
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc---eE----EEecCC-----------CCCeEEEEEecCCC--EEEEEE
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EG----LLISPS-----------QLPYKNLEFLQNQG--FLISIT 95 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~---~~----~~~~~~-----------~~~V~~l~Fs~d~~--~Lvs~s 95 (1043)
.-++++.|+..|.+||+|..+|+|.+|..... +. .++.+. ...|..+.|.++++ ..+..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 34899999999999999999999999975432 21 122221 34788999988653 455566
Q ss_pred CCCcEEEEECCCCceeE---------------Ee-----e-----------------cCCCEEEEEEeCCCCEEEEEeCC
Q 001621 96 NDNEIQVWSLESRSLAC---------------CL-----K-----------------WESNITAFSVISGSHFMYIGDEN 138 (1043)
Q Consensus 96 ~d~~I~vWdl~t~~~l~---------------~~-----~-----------------~~~~Vtav~~sp~~~~l~vG~~d 138 (1043)
.|.+|++|-+..+.... ++ . +.-.|+++.+..|...+++++ |
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence 89999999986542110 11 0 012578899999988877765 5
Q ss_pred CcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001621 139 GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1043)
Q Consensus 139 G~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~ 218 (1043)
-.|.+|+++.-...+.. --|......+ -..-|++-.|||. ..+.++-+++.|+|+|-|++...+ +..-.
T Consensus 185 LRINLWnlei~d~sFnI--VDIKP~nmEe-------LteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aL-Cd~hs 253 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNI--VDIKPANMEE-------LTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSAL-CDAHS 253 (433)
T ss_pred eeeeeccccccCCceeE--EEccccCHHH-------HHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhh-hcchh
Confidence 56889998765444331 1111110000 0234788899997 566788899999999999986532 11000
Q ss_pred cccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
+ .+ +.| ..++.. +.=..--..|..+.|+ ++|++|++-.- -+|++||++-
T Consensus 254 K--lf--Eep-------edp~~r-sffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 254 K--LF--EEP-------EDPSSR-SFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred h--hh--ccc-------cCCcch-hhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccc
Confidence 0 00 000 000000 0000014568889996 99999986532 6899999853
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=0.0017 Score=75.55 Aligned_cols=208 Identities=20% Similarity=0.178 Sum_probs=137.3
Q ss_pred cCCC--CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc------eEE-----E----ec-CCCCCeEEEEEecCCCEEEEE
Q 001621 33 GIPA--TASILAFDHIQRLLAIATLDGRIKVIGGDGI------EGL-----L----IS-PSQLPYKNLEFLQNQGFLISI 94 (1043)
Q Consensus 33 G~~~--~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~------~~~-----~----~~-~~~~~V~~l~Fs~d~~~Lvs~ 94 (1043)
|+|. ...|++|+..+.++|+|+.||.++|...... ..+ + ++ .|...|..+.|..+.+.|-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 4444 4689999999999999999999999753211 111 1 11 256789999999998899999
Q ss_pred ECCCcEEEEECCCCceeEEee---cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCC
Q 001621 95 TNDNEIQVWSLESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1043)
Q Consensus 95 s~d~~I~vWdl~t~~~l~~~~---~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1043)
+.+|.|.||-+..|.....+. ..+-|.++++..+|..+++..+||.|-|=.+|. .++. +..+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG--NRIw-------gKeL------ 154 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG--NRIW-------GKEL------ 154 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc--ceec-------chhc------
Confidence 999999999999887655442 347789999999999999999999875544443 1111 1001
Q ss_pred CCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 172 ~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
.......+.|+|+ ..+++.+-.+|.+.|||-..+-.. .+. ..+++.. .+.-.. ....
T Consensus 155 ---kg~~l~hv~ws~D--~~~~Lf~~ange~hlydnqgnF~~-Kl~-----~~c~Vn~--tg~~s~----------~~~k 211 (1189)
T KOG2041|consen 155 ---KGQLLAHVLWSED--LEQALFKKANGETHLYDNQGNFER-KLE-----KDCEVNG--TGIFSN----------FPTK 211 (1189)
T ss_pred ---chheccceeeccc--HHHHHhhhcCCcEEEecccccHHH-hhh-----hceEEee--eeeecC----------CCcc
Confidence 0122357889994 666788888999999997643111 000 0000000 000000 1223
Q ss_pred eEEEEEe-------cCCCCEEEEEEcCCcEEEEc
Q 001621 252 ISALCWA-------SSSGSILAVGYIDGDILLWN 278 (1043)
Q Consensus 252 V~sl~w~-------sp~g~~l~tg~~DG~I~iWd 278 (1043)
|-.++|. .|+...++.++..|.+.+-.
T Consensus 212 ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 212 IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 5555664 26778899999999887744
No 270
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.32 E-value=1.3e-05 Score=96.68 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
.....++.+..+..+-+||...+.+ +..+... ....+ .+..-+-++++.-++++|+--|.|.+|++......
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~-er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p- 168 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSV--LSKIQSD-ERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP- 168 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCce--ehhcCCC-ceEEE----EeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence 3344566667788999999887652 1111110 00011 12344567888889999999999999999732211
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeE
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPII 652 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~ 652 (1043)
..+.+|.+.|-++.+|.||+++|+.|+|.++|+|++.+..++--.-+ +|+..|.
T Consensus 169 ------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f--gHsaRvw 222 (967)
T KOG0974|consen 169 ------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF--GHSARVW 222 (967)
T ss_pred ------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc--cccceeE
Confidence 13589999999999999999999999999999999999877541111 3788999
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeee
Q 001621 653 SMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1043)
Q Consensus 653 sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~ 706 (1043)
.++|.+ +.++++++|-+.++|+ ..|.++.
T Consensus 223 ~~~~~~------------------------n~i~t~gedctcrvW~-~~~~~l~ 251 (967)
T KOG0974|consen 223 ACCFLP------------------------NRIITVGEDCTCRVWG-VNGTQLE 251 (967)
T ss_pred EEEecc------------------------ceeEEeccceEEEEEe-cccceeh
Confidence 999963 2499999999999993 3344433
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=0.00012 Score=95.07 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=134.5
Q ss_pred CeEEEEEcCCCCEEEEEEc-CCcEEEEcCCCceEE-EecC--------C--------CCCeEEEEEecCCCEE-EEEECC
Q 001621 37 TASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGL-LISP--------S--------QLPYKNLEFLQNQGFL-ISITND 97 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~-dG~I~v~~~~~~~~~-~~~~--------~--------~~~V~~l~Fs~d~~~L-vs~s~d 97 (1043)
....++|++++..|.++.. .++|++++..+.... +... . -..-..++|+++++.| ++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3678899999887777654 478999987554332 1110 0 0123578999954544 555678
Q ss_pred CcEEEEECCCCceeEEeecC----------------CCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceee
Q 001621 98 NEIQVWSLESRSLACCLKWE----------------SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNI 160 (1043)
Q Consensus 98 ~~I~vWdl~t~~~l~~~~~~----------------~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i 160 (1043)
+.|.+||..++... .+... ...+.++++|++++||++.. ++.|++|+++.....+.......
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999999887543 12110 23467999999998887765 47787777654321111000000
Q ss_pred cccccccccCCC-----CCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCC
Q 001621 161 SADALSEKAGFP-----LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1043)
Q Consensus 161 ~~~~~~~~~~~~-----~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1043)
....+ ...+.. ........++++.|+ |+.+++-+.++.|++||..++.+....+... .+.
T Consensus 784 ~~~~l-~~fG~~dG~g~~~~l~~P~Gvavd~d--G~LYVADs~N~rIrviD~~tg~v~tiaG~G~-----------~G~- 848 (1057)
T PLN02919 784 FSDNL-FKFGDHDGVGSEVLLQHPLGVLCAKD--GQIYVADSYNHKIKKLDPATKRVTTLAGTGK-----------AGF- 848 (1057)
T ss_pred cCccc-ccccCCCCchhhhhccCCceeeEeCC--CcEEEEECCCCEEEEEECCCCeEEEEeccCC-----------cCC-
Confidence 00000 000000 011223468888884 7766667788999999998887765443100 000
Q ss_pred CCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCc
Q 001621 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
.+|... ..+-.....+++. ++|+.+++-+.++.|++||+.++..
T Consensus 849 -~dG~~~---~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 849 -KDGKAL---KAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCCccc---ccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCCCcc
Confidence 011110 1112456788886 9999888888899999999988754
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.32 E-value=0.0022 Score=71.58 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=135.6
Q ss_pred CCccCccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC--ceEEEe-cCC---------CCCeEEEE-Ee
Q 001621 19 LTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG--IEGLLI-SPS---------QLPYKNLE-FL 85 (1043)
Q Consensus 19 l~~~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~--~~~~~~-~~~---------~~~V~~l~-Fs 85 (1043)
|=+.+++=+.+.++.--..-.+=-.+.+|+.++- +..|.|++||..+ .+.+-. ++- -.+.+.+. |+
T Consensus 250 lYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa 328 (668)
T COG4946 250 LYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFA 328 (668)
T ss_pred eEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhc
Confidence 3344444444433322222222233668887654 4678999999643 333311 111 12455555 65
Q ss_pred c-CCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCC-cEEEEEEeCCCCeEeeeceeeccc
Q 001621 86 Q-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG-LMSVIKYDADEGKLFQLPYNISAD 163 (1043)
Q Consensus 86 ~-d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG-~v~v~~~d~~~~~l~~~~~~i~~~ 163 (1043)
+ +|.+++.+| -|...+.+...+-.+. +...+.|.-..+..+.+-+++|+.|| .+-|++++. +++. ++
T Consensus 329 ~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~k----r~--- 397 (668)
T COG4946 329 VVNGDYIALVS-RGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVK----RI--- 397 (668)
T ss_pred cCCCcEEEEEe-cCcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEE----Ee---
Confidence 5 445555555 5566665554443332 33456688888888888899999999 566666554 3322 11
Q ss_pred ccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCcc
Q 001621 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1043)
Q Consensus 164 ~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (1043)
....+.|.++..+| +|+.++++.....+.+.|+.++.+...-.
T Consensus 398 ---------e~~lg~I~av~vs~--dGK~~vvaNdr~el~vididngnv~~idk-------------------------- 440 (668)
T COG4946 398 ---------EKDLGNIEAVKVSP--DGKKVVVANDRFELWVIDIDNGNVRLIDK-------------------------- 440 (668)
T ss_pred ---------eCCccceEEEEEcC--CCcEEEEEcCceEEEEEEecCCCeeEecc--------------------------
Confidence 12457899999999 49988899888999999999998653311
Q ss_pred CCCCCCCCeEEEEEecCCCCEEEEEEcCC----cEEEEcCCCCCc
Q 001621 244 EHQPEEKEISALCWASSSGSILAVGYIDG----DILLWNTSTTAS 284 (1043)
Q Consensus 244 ~~~~~~~~V~sl~w~sp~g~~l~tg~~DG----~I~iWd~~tg~~ 284 (1043)
.+..-|+...|+ |++++||-+.-+| .|+++|+.+++.
T Consensus 441 ---S~~~lItdf~~~-~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 441 ---SEYGLITDFDWH-PNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ---cccceeEEEEEc-CCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 136779999997 9999999766555 689999987753
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.00021 Score=77.73 Aligned_cols=215 Identities=15% Similarity=0.205 Sum_probs=140.5
Q ss_pred eeeecccCCCCe-EEEEEcCCCCEEEEEEcC-CcEEEEcCCC-ceE-----EEecC----C----CCCeEEEEEecCCCE
Q 001621 27 RIAVHYGIPATA-SILAFDHIQRLLAIATLD-GRIKVIGGDG-IEG-----LLISP----S----QLPYKNLEFLQNQGF 90 (1043)
Q Consensus 27 ~~~~~~G~~~~v-~~lafsp~g~lLAvgt~d-G~I~v~~~~~-~~~-----~~~~~----~----~~~V~~l~Fs~d~~~ 90 (1043)
...++.-.++.. .-+++|+++++|.++... |.|.|+-.+. +.. +..+. + ..-+-...|.|++++
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 455565556555 779999999999998765 8999987532 211 11111 1 112778889999999
Q ss_pred EEEEEC-CCcEEEEECCCCceeEEe----ecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeec--eeecc
Q 001621 91 LISITN-DNEIQVWSLESRSLACCL----KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLP--YNISA 162 (1043)
Q Consensus 91 Lvs~s~-d~~I~vWdl~t~~~l~~~----~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~--~~i~~ 162 (1043)
|++++- -.+|.+++++.|++...- +....-..+.|.|+++++|+-++ +++|-||.|+...+++...+ -.+|.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 999984 467999999988764322 33356789999999999998887 78899999998666665311 11222
Q ss_pred cccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCC--eEEEEEccCC-eEEEEeCCcccccccccccCCCCCCCCcc
Q 001621 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA--LVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1043)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg--~I~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (1043)
+. ........|..+| +|+ +|.++..| .|.+|.+... ..+...+. . +
T Consensus 239 dF---------~g~~~~aaIhis~--dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~-------~-~----------- 287 (346)
T COG2706 239 DF---------TGTNWAAAIHISP--DGR-FLYASNRGHDSIAVFSVDPDGGKLELVGI-------T-P----------- 287 (346)
T ss_pred cc---------CCCCceeEEEECC--CCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEE-------e-c-----------
Confidence 11 1234567788889 597 55555544 6777777654 22222211 0 0
Q ss_pred cCccCCCCCCCCeEEEEEecCCCCEEEEEEcCC-cEEEEcCC
Q 001621 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWNTS 280 (1043)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG-~I~iWd~~ 280 (1043)
.+........++ +.|++|+++.+|+ .|.++.+.
T Consensus 288 -------teg~~PR~F~i~-~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 288 -------TEGQFPRDFNIN-PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred -------cCCcCCccceeC-CCCCEEEEEccCCCcEEEEEEc
Confidence 012224456676 9999999999864 47777653
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.29 E-value=1.1e-05 Score=88.21 Aligned_cols=162 Identities=11% Similarity=0.051 Sum_probs=120.1
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCC--ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~--l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~ 567 (1043)
..++.++++|.+-.+....+.|+.... .+++.... -...-+++.|..+.....++...|.++-+|.-.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~----------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC----------VPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee----------cccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 477888888888877777777766544 22222111 112456778888888888888888888887754
Q ss_pred CCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCC
Q 001621 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1043)
Q Consensus 568 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~ 647 (1043)
-.. +. .....+|-+-++.|++|||++++.++..|..|++-......++....+ +|
T Consensus 139 ~~~-~~----------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH 193 (390)
T KOG3914|consen 139 ADS-GR----------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GH 193 (390)
T ss_pred ccc-cC----------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--cc
Confidence 211 11 123468999999999999999999999999999999988877755333 57
Q ss_pred CCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCC
Q 001621 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP 709 (1043)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~ 709 (1043)
...|..++.-+ ...|++++-|++|++||-.+|..+..|.
T Consensus 194 ~eFVS~isl~~-----------------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 194 KEFVSTISLTD-----------------------NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred Hhheeeeeecc-----------------------CceeeecCCCCcEEEEecccCCcccccc
Confidence 77888888742 2338999999999999999999998773
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.21 E-value=4.2e-06 Score=62.50 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=33.9
Q ss_pred eEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001621 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1043)
Q Consensus 596 ~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD 631 (1043)
...+.+|.++|++|+|+|++.+||+|+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456789999999999999999999999999999998
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.19 E-value=4.2e-06 Score=105.11 Aligned_cols=189 Identities=10% Similarity=0.106 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCc--eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEee
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~--~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~ 115 (1043)
|.++.=+|.--+-.+|+.||.|++|.-... -+.+...+...|+.+.|+.+|+..-.++.||.+.+|.+. .++....+
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc
Confidence 566666888888899999999999763222 222333344889999999999999999999999999987 45555554
Q ss_pred cC-CCEEEEEEeCCCCEEEEE---eCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 116 WE-SNITAFSVISGSHFMYIG---DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 116 ~~-~~Vtav~~sp~~~~l~vG---~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
-| ...+.+.|.. ..++++ .+++++.+|+-..... -..+ +..|.+.++++++-|+ -.
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-----~s~v-----------~~~H~~gaT~l~~~P~--~q 2349 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-----NSLV-----------HTCHDGGATVLAYAPK--HQ 2349 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-----ccee-----------eeecCCCceEEEEcCc--ce
Confidence 33 4566676655 344443 3467777776432110 0111 2457889999999996 55
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC
Q 001621 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D 271 (1043)
.+++|+.+|.|.|||++..+.+..+. . |. ...++++|+..
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~--------------------------------~------~~--~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------------A------LD--TREYFVTGSSE 2389 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhh--------------------------------h------hh--hhheeeccCcc
Confidence 68889999999999999877654331 1 32 45689999999
Q ss_pred CcEEEEcCCCCCcccc
Q 001621 272 GDILLWNTSTTASTKG 287 (1043)
Q Consensus 272 G~I~iWd~~tg~~~~~ 287 (1043)
|.|+||++.....+..
T Consensus 2390 g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred cceEEEEccccchhhc
Confidence 9999999987765543
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00083 Score=79.15 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=103.7
Q ss_pred CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEE---EEECC--CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCE
Q 001621 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI---SITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHF 131 (1043)
Q Consensus 57 G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lv---s~s~d--~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~ 131 (1043)
..|.+.|.++............+..-+|+|||..+. +...+ ..|.+.|+.+++.......++.....+++|||+.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 467777766554432222344566779999986522 33333 3588889988876554455666677899999988
Q ss_pred EEEEeC-CCc--EEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE-CCCeEEEEEc
Q 001621 132 MYIGDE-NGL--MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDV 207 (1043)
Q Consensus 132 l~vG~~-dG~--v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~-~dg~I~lWd~ 207 (1043)
|+.... +|. +.+..++...+.... +..+. ..........+|+| ||++|+..+ .+|...||.+
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~-~~~lt-----------~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGK-PRRLL-----------NEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCc-ceEee-----------cCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEE
Confidence 876543 342 333222322110000 01111 01112335679999 488777665 4565555543
Q ss_pred --cC-CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC---CcEEEEcCCC
Q 001621 208 --SE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTST 281 (1043)
Q Consensus 208 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D---G~I~iWd~~t 281 (1043)
.. +.....+.. ....+.+..|+ |||+.|+....+ ..|.+||+.+
T Consensus 311 ~~~~~g~~~~~lt~-----------------------------~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 311 QIDPEGQSPRLLTK-----------------------------KYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred ECcccccceEEecc-----------------------------CCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence 21 111111110 02345677896 999999876653 3689999988
Q ss_pred CCc
Q 001621 282 TAS 284 (1043)
Q Consensus 282 g~~ 284 (1043)
++.
T Consensus 361 g~~ 363 (428)
T PRK01029 361 GRD 363 (428)
T ss_pred CCe
Confidence 754
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.09 E-value=0.00042 Score=77.11 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=110.8
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEeecCCCEEEEE
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-EIQVWSLESRSLACCLKWESNITAFS 124 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~-~I~vWdl~t~~~l~~~~~~~~Vtav~ 124 (1043)
+|.++|.-+. |+..|.+.... ..++.++...|+..++..+..-++.+..|| .+-|+|.++++.-.-...-+.|-++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 5777777764 67777654322 234566677799999988777789999888 89999999987655555559999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCC----
Q 001621 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---- 200 (1043)
Q Consensus 125 ~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg---- 200 (1043)
++|+|++++++...+.+ |.+|.+.+.... +. +...+-|+...|||+ +++++-+..+|
T Consensus 409 vs~dGK~~vvaNdr~el--~vididngnv~~----id-----------kS~~~lItdf~~~~n--sr~iAYafP~gy~tq 469 (668)
T COG4946 409 VSPDGKKVVVANDRFEL--WVIDIDNGNVRL----ID-----------KSEYGLITDFDWHPN--SRWIAYAFPEGYYTQ 469 (668)
T ss_pred EcCCCcEEEEEcCceEE--EEEEecCCCeeE----ec-----------ccccceeEEEEEcCC--ceeEEEecCcceeee
Confidence 99999999999887755 666665554431 11 123467999999994 88888877766
Q ss_pred eEEEEEccCCeEEEE
Q 001621 201 LVILWDVSEAQIIFV 215 (1043)
Q Consensus 201 ~I~lWd~~~~~~~~~ 215 (1043)
.|+|+|+..++....
T Consensus 470 ~Iklydm~~~Kiy~v 484 (668)
T COG4946 470 SIKLYDMDGGKIYDV 484 (668)
T ss_pred eEEEEecCCCeEEEe
Confidence 789999998887543
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=2e-05 Score=88.22 Aligned_cols=179 Identities=10% Similarity=0.076 Sum_probs=119.2
Q ss_pred ccCCCCCCCCccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC
Q 001621 478 LSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF 557 (1043)
Q Consensus 478 l~Gg~~~~~~~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d 557 (1043)
..||...++.+++ -.+.+-+++++.|+||++|.+..-- ........+.....|..+|..+.|-.+.+++|+ .|
T Consensus 731 f~GH~~~iRai~A-idNENSFiSASkDKTVKLWSik~Eg----D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAA-IDNENSFISASKDKTVKLWSIKPEG----DEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred ccCcHHHhHHHHh-cccccceeeccCCceEEEEEecccc----CccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 4677776665533 3566789999999999999886432 112223334555688999999999999888765 57
Q ss_pred ccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC--CcE-EEEEeCCCeEEEEEcCC
Q 001621 558 GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS--GAK-LAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 558 G~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d--g~~-lA~Gs~dg~V~vwD~~~ 634 (1043)
|-+.+||.-.++....+ ......+.++.+.+-++ ... +|.++...+|+++|.+.
T Consensus 804 ~giHlWDPFigr~Laq~-----------------------~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQM-----------------------EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred CcceeecccccchhHhh-----------------------hcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 88999997543321110 01122233444444343 333 34448899999999998
Q ss_pred ceEEEEeecC--CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecC
Q 001621 635 LSVLFFTDDI--SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1043)
Q Consensus 635 ~~~l~~~~~~--~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~ 708 (1043)
+..+....+. ++...-+++++..+. ++.++++-..|+|.++|+.+|.++.+-
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~----------------------GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADK----------------------GNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccC----------------------cchhhHHhcCCcEEEEecCCCceeccC
Confidence 8766443332 223345778887643 355999999999999999999999865
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.0045 Score=67.66 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=121.0
Q ss_pred CCcEEEEcCCCceEEE----ecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCC--Ccee--EEeecC-CCEEEE
Q 001621 56 DGRIKVIGGDGIEGLL----ISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLES--RSLA--CCLKWE-SNITAF 123 (1043)
Q Consensus 56 dG~I~v~~~~~~~~~~----~~~~~~~V~~l~Fs~d~~~Lvs~s~d---~~I~vWdl~t--~~~l--~~~~~~-~~Vtav 123 (1043)
+.-|++|+.+.....+ ........+.|+|.|++++|.++..+ |.|.-+.++. |++. ...... .+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3679999876333222 22335678999999999999998754 6777777764 5432 222233 334999
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCe
Q 001621 124 SVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NAL 201 (1043)
Q Consensus 124 ~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~ 201 (1043)
++++++++++++.- .|.|.|..+..+ +.+....-.+.. .+.....+.....+.+..+.|+ +++|++..- --.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h---~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~Dr 168 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKH---TGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTDR 168 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccC-Cccccceeeeec---CCCCCCccccCCccceeeeCCC--CCEEEEeecCCce
Confidence 99999999998865 477888777654 333210000000 0000001112334888899994 875555432 236
Q ss_pred EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc-CCcEEEEcCC
Q 001621 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTS 280 (1043)
Q Consensus 202 I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~-DG~I~iWd~~ 280 (1043)
|.+|++.+++....-.. ++ +. .....-+.|+ |+|++..+..+ +++|.+|...
T Consensus 169 i~~y~~~dg~L~~~~~~-------~v-------~~------------G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 169 IFLYDLDDGKLTPADPA-------EV-------KP------------GAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred EEEEEcccCcccccccc-------cc-------CC------------CCCcceEEEc-CCCcEEEEEeccCCEEEEEEEc
Confidence 78999998876433221 11 11 2224567897 99999988887 8999999998
Q ss_pred CC
Q 001621 281 TT 282 (1043)
Q Consensus 281 tg 282 (1043)
..
T Consensus 222 ~~ 223 (346)
T COG2706 222 PA 223 (346)
T ss_pred CC
Confidence 74
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.08 E-value=0.0027 Score=82.60 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=128.0
Q ss_pred EEEEEcCC-CCEEEEEEcCCcEEEEcCCCceEEEecC-CC-------------CCeEEEEEecCCCEEEEEECC-CcEEE
Q 001621 39 SILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISP-SQ-------------LPYKNLEFLQNQGFLISITND-NEIQV 102 (1043)
Q Consensus 39 ~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~-------------~~V~~l~Fs~d~~~Lvs~s~d-~~I~v 102 (1043)
..+++++. +.+.++-+.+++|++|+..+........ .. ..-..|+|.++++.|+.++.. +.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45689985 5677777788999999986653322211 10 124678899887877777654 67999
Q ss_pred EECCCCceeEEeecC------------------CCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeeccc
Q 001621 103 WSLESRSLACCLKWE------------------SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISAD 163 (1043)
Q Consensus 103 Wdl~t~~~l~~~~~~------------------~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~ 163 (1043)
+|+.++. +.++... ..-+.++++|++..+|++. .++.|++| +...+.... +.-...
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~--d~~~g~v~~--~~G~G~ 725 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEY--NISDGVTRV--FSGDGY 725 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEE--ECCCCeEEE--EecCCc
Confidence 9998765 3333110 1236789999766666665 45555554 443333221 110000
Q ss_pred ccccccCCC--CCCCCCeEEEEecCCCCCCEEE-EEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCccc
Q 001621 164 ALSEKAGFP--LLSHQPVVGVLPHPNSSGNRVL-IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1043)
Q Consensus 164 ~~~~~~~~~--~~~~~~V~sl~~sp~d~g~~ll-~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (1043)
.. ...+.. .........|+++|+ |.+|+ +-+.++.|++||+.++......++...... ... .-+...+.+.
T Consensus 726 ~~-~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~-~l~--~fG~~dG~g~ 799 (1057)
T PLN02919 726 ER-NLNGSSGTSTSFAQPSGISLSPD--LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD-NLF--KFGDHDGVGS 799 (1057)
T ss_pred cc-cCCCCccccccccCccEEEEeCC--CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc-ccc--cccCCCCchh
Confidence 00 000000 011234578999995 65454 445678999999987764322221000000 000 0000000000
Q ss_pred CccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCc
Q 001621 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
...-....++++. ++|..+++-+.++.|++||..++..
T Consensus 800 -----~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 800 -----EVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred -----hhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCeE
Confidence 0012234578886 9999888888999999999987653
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.00069 Score=79.38 Aligned_cols=156 Identities=8% Similarity=0.001 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCC-EEEEEEcC---CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEE-CC--CcEEEEECCCCc
Q 001621 37 TASILAFDHIQR-LLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-ND--NEIQVWSLESRS 109 (1043)
Q Consensus 37 ~v~~lafsp~g~-lLAvgt~d---G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s-~d--~~I~vWdl~t~~ 109 (1043)
....-+|+|+|+ +++..+.+ ..|++++..+.+...............|+||+.+|+... .+ ..|.++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 456788999998 47765544 468888887665543333445566778999998776543 33 468888998887
Q ss_pred eeEEeecCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 110 LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 110 ~l~~~~~~~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
.......++....-.|+|||+.++..+ ..|.-+||.++.+.+.... +.. .+.. ...|+|+
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r----lt~----------~g~~----~~~~SPD- 329 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ----VVF----------HGKN----NSSVSTY- 329 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe----Ccc----------CCCc----CceECCC-
Confidence 443223333344567999999777655 4565567777765544321 110 0111 1379994
Q ss_pred CCCEEEEEECC---------CeEEEEEccCCeE
Q 001621 189 SGNRVLIAYEN---------ALVILWDVSEAQI 212 (1043)
Q Consensus 189 ~g~~ll~~~~d---------g~I~lWd~~~~~~ 212 (1043)
|++++..... ..|.+.|+.++..
T Consensus 330 -G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 330 -KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred -CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 7777665543 2567777776654
No 283
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.06 E-value=6.7e-06 Score=74.06 Aligned_cols=51 Identities=35% Similarity=0.488 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhh
Q 001621 986 AEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1036 (1043)
Q Consensus 986 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1036 (1043)
-.+....+..+=+++.||||||+.|++||++|+.+|+.|.+-|++|.++|.
T Consensus 12 v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 12 VEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999998873
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.06 E-value=0.002 Score=68.31 Aligned_cols=238 Identities=15% Similarity=0.093 Sum_probs=122.4
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
+.+.+|++||.- .|..|.|=-.....-..+... +| ..+....=..|+||||+.+||.+...|+|++||+....
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kc-----qV-pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKC-----QV-PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCchheeEEE-----ec-CCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 356788777665 477777765554431111111 11 12333456789999999999999999999999997531
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC-------CcEEEEEeCCCeEEEEEc-----CCceE
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-------GAKLAVGFECGRVAVLDM-----NLLSV 637 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d-------g~~lA~Gs~dg~V~vwD~-----~~~~~ 637 (1043)
-|+ +.....+ ..-.+.+|..|.|-+- -.+|++ +.+|.++=+=+ +..+.
T Consensus 77 -----lf~---------I~p~~~~-----~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 77 -----LFV---------IPPAMSF-----PGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred -----eEE---------cCccccc-----CCccccceeeeEeeccccccccceeEEEE-eccceeeeEEEEcccCCccee
Confidence 111 1110000 0012234445544332 233444 44555554443 22344
Q ss_pred EEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEecc-C----------ceEEEEcCCCCCeee
Q 001621 638 LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-D----------AKISIVGGSSENMIS 706 (1043)
Q Consensus 638 l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~-d----------g~I~~~d~~~g~~l~ 706 (1043)
.|...+...++.+|.++.|.+.. ++|++|+. . .-+..|..-++..-.
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h----------------------~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKH----------------------RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCC----------------------CEEEEeccCCCCCccccccccCceEEEEcCCCCcE
Confidence 45544444567889999996421 23444332 2 224455544443322
Q ss_pred cCCCCcCCCce-eE-EEEE--eccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecceeEEEEEEEeeCcEEEEeCC
Q 001621 707 SSPWHLKKKVI-AI-SMEV--IDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 782 (1043)
Q Consensus 707 ~~~~~~~~~~~-a~-~~~v--~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp 782 (1043)
.+....+..-. +. ...+ +..+++|... + ..-.++.-+..+|+|..|||+..+|.|.+|++|
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~----~-----------~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQ----G-----------QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred EEccccCccccccccccceeeccceeeeecc----c-----------cCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 22111100000 00 0000 0122222210 1 111222234448999999999999999999999
Q ss_pred Chhhhhhhc
Q 001621 783 DLELVMESS 791 (1043)
Q Consensus 783 ~l~~~~~~~ 791 (1043)
+|+...+-.
T Consensus 260 sL~~~~~W~ 268 (282)
T PF15492_consen 260 SLRLQRSWK 268 (282)
T ss_pred cchhhcccc
Confidence 999766443
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.05 E-value=0.00044 Score=72.92 Aligned_cols=191 Identities=12% Similarity=0.134 Sum_probs=124.1
Q ss_pred CEEEEEEc------------CCcEEEEcCCCceEE----EecCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEECCC
Q 001621 48 RLLAIATL------------DGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQ---NQG-FLISITNDNEIQVWSLES 107 (1043)
Q Consensus 48 ~lLAvgt~------------dG~I~v~~~~~~~~~----~~~~~~~~V~~l~Fs~---d~~-~Lvs~s~d~~I~vWdl~t 107 (1043)
++||+|+. .|++++|+....+.. ++-.....+..+.|.- ++. .|+-+...|.|+++-..-
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 38888863 378888886543322 1111234555555642 333 466677889999998766
Q ss_pred CceeEEeecC-------CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 108 RSLACCLKWE-------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 108 ~~~l~~~~~~-------~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
......+..- ..--++.+++.+.-++++.++|.+.+...+. ..+. . ...-+.|.-+++
T Consensus 105 ~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le-------~------vq~wk~He~E~W 169 (339)
T KOG0280|consen 105 DESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLE-------K------VQTWKVHEFEAW 169 (339)
T ss_pred ceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeee-------e------cccccccceeee
Confidence 5544444321 1134667888899999999999987543322 1111 0 001134666778
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccC-CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
-..|+-. +.+.+.+|++||.+.-||++- ++.+.. . ...|...|+|+.-+.
T Consensus 170 ta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~--n--------------------------~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 170 TAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWH--N--------------------------SKVHTSGVVSIYSSP 220 (339)
T ss_pred eeecccC-CCceEEecCCCceEEEEEecCCcceeee--c--------------------------ceeeecceEEEecCC
Confidence 8888876 356789999999999999983 332221 1 112367799987665
Q ss_pred CCCCEEEEEEcCCcEEEEcCCCC
Q 001621 260 SSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 260 p~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
|.+.+|+||+-|-.|++||.++.
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred CCCceEEEeccccceeeeehhcc
Confidence 77889999999999999998754
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.05 E-value=1.8e-05 Score=83.26 Aligned_cols=222 Identities=15% Similarity=0.214 Sum_probs=135.5
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce---EE----EecC-----------CCCCeEEEEEecCCC--EEEEEE
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL----LISP-----------SQLPYKNLEFLQNQG--FLISIT 95 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~---~~----~~~~-----------~~~~V~~l~Fs~d~~--~Lvs~s 95 (1043)
..|+++-|+..|.+||+|...|+|.+|...... .. ++.+ -...|..+.|..+++ .++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 458999999999999999999999999865322 11 1111 124688888887543 455566
Q ss_pred CCCcEEEEECCCCce-------------------e--------EEee-----------------cCCCEEEEEEeCCCCE
Q 001621 96 NDNEIQVWSLESRSL-------------------A--------CCLK-----------------WESNITAFSVISGSHF 131 (1043)
Q Consensus 96 ~d~~I~vWdl~t~~~-------------------l--------~~~~-----------------~~~~Vtav~~sp~~~~ 131 (1043)
.|.+|++|.+..+.+ + ..+. ++-.|+++.+..|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999999876511 0 0000 0124677888888777
Q ss_pred EEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe
Q 001621 132 MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1043)
Q Consensus 132 l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~ 211 (1043)
++++. +-.|.+|+++..++.+.. .-|......+ -..-|++..|||. ..+.+..++..|.|.|-|+++..
T Consensus 187 ~lSaD-dLrINLWnl~i~D~sFnI--VDiKP~nmee-------LteVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 187 LLSAD-DLRINLWNLEIIDGSFNI--VDIKPHNMEE-------LTEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecc-ceeeeeccccccCCceEE--EeccCccHHH-------HHHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhh
Confidence 76654 556889998876555442 1111111100 0234788899997 45567778889999999998653
Q ss_pred EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 212 IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
+- .-..+.+.+ . .+|.....-..-...|..+.|+ ++|++|++-.- .++++||+...+
T Consensus 256 lc-dn~~klfe~--~----------~D~v~~~ff~eivsSISD~kFs-~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 256 LC-DNSKKLFEL--T----------IDGVDVDFFEEIVSSISDFKFS-DNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hc-cCchhhhhh--c----------cCcccchhHHHHhhhhcceEEc-CCCcEEEEecc-ceEEEEeccccc
Confidence 21 000000000 0 0010000000114567888996 99999886543 689999987544
No 287
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=8.3e-06 Score=74.17 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001621 987 EDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1042 (1043)
Q Consensus 987 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1042 (1043)
.+.-..+..+=+|..||||||..|.+||+.|+++|..|-.-|..|.++ .||+
T Consensus 39 deVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk----~wWk 90 (116)
T KOG0860|consen 39 DEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRK----MWWK 90 (116)
T ss_pred HHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 355688889999999999999999999999999999999999888765 5886
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00014 Score=85.83 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=128.0
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
.++|++|+ ++.||-||.+|.|++++.++.-.. .+.+... ..+|.|+++++.||+|.|-.+-+.+..+++.+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPKT-NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcccc-ccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 47778774 689999999999999986553211 1111111 45789999999999999999999999999999
Q ss_pred CCCEEEEEEeCC-----CCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccccc-CCCCCCCCCeEEEEecCCCCC
Q 001621 117 ESNITAFSVISG-----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA-GFPLLSHQPVVGVLPHPNSSG 190 (1043)
Q Consensus 117 ~~~Vtav~~sp~-----~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~V~sl~~sp~d~g 190 (1043)
+-++.+++++|+ .+.+++|+.-| +-+. . ++ |++... .......++|.++.|. |
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~---e-r~------------wlgnk~~v~l~~~eG~I~~i~W~----g 170 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS---E-RN------------WLGNKDSVVLSEGEGPIHSIKWR----G 170 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEe---h-hh------------hhcCccceeeecCccceEEEEec----C
Confidence 999999999998 55788888888 4221 1 11 111100 0112356899999997 5
Q ss_pred CEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 191 ~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
++++=+...|. ++||+.+++.+..... + ...++. +.-...++|. +...|+.|-.
T Consensus 171 ~lIAWand~Gv-~vyd~~~~~~l~~i~~---------p---~~~~R~-----------e~fpphl~W~--~~~~LVIGW~ 224 (846)
T KOG2066|consen 171 NLIAWANDDGV-KVYDTPTRQRLTNIPP---------P---SQSVRP-----------ELFPPHLHWQ--DEDRLVIGWG 224 (846)
T ss_pred cEEEEecCCCc-EEEeccccceeeccCC---------C---CCCCCc-----------ccCCCceEec--CCCeEEEecC
Confidence 66777777776 9999999887765432 0 111110 2334568895 4456666655
Q ss_pred CCcEEEEcCC
Q 001621 271 DGDILLWNTS 280 (1043)
Q Consensus 271 DG~I~iWd~~ 280 (1043)
| +|++..+.
T Consensus 225 d-~v~i~~I~ 233 (846)
T KOG2066|consen 225 D-SVKICSIK 233 (846)
T ss_pred C-eEEEEEEe
Confidence 4 57787776
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.92 E-value=0.00042 Score=72.07 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=109.5
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeee
Q 001621 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 577 (1043)
Q Consensus 498 l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~ 577 (1043)
+..++.|.++++.+++.+....... .....+.++++++|++++++-+....|..|.+.......
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h-----------~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~----- 194 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVH-----------NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI----- 194 (344)
T ss_pred eeeccCCcceeEEEEecCcccceee-----------ccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----
Confidence 4445678999999988765321111 111238899999999999999999999999997643210
Q ss_pred ccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEee--cCCCCCCCeEEEE
Q 001621 578 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD--DISGSSSPIISMT 655 (1043)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~--~~~~~~~~V~sl~ 655 (1043)
........+..=-+..||......|+++.||++.|||++.-+..+... -++.+.+.|+...
T Consensus 195 -----------------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 195 -----------------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred -----------------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 001122334445678899999999999999999999998765543221 1234678899999
Q ss_pred EEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecC
Q 001621 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1043)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~ 708 (1043)
|++.|.. .+|+..-.-+.+.+.|..++.-.+..
T Consensus 258 Fsl~g~l--------------------DLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 258 FSLYGLL--------------------DLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ecCCCcc--------------------eEEEEecCcceEEEEEcccCceeeEE
Confidence 9976521 34666666789999999887544433
No 290
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00098 Score=78.73 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=57.0
Q ss_pred CeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEE
Q 001621 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w 257 (1043)
.+++++|||. --.|+.|.+-|.+.+|...+.+...... .|+.+|+-+.|
T Consensus 61 hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~-----------------------------th~a~i~~l~w 109 (1416)
T KOG3617|consen 61 HATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVE-----------------------------THPAPIQGLDW 109 (1416)
T ss_pred ehhhhccChH--HHHHhhccccceeEEEecCCceeeeecc-----------------------------CCCCCceeEEe
Confidence 4678999995 3347778899999999987655432211 14778999999
Q ss_pred ecCCCCEEEEEEcCCcEEEEcCCCC
Q 001621 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 258 ~sp~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
+ ++|..++|+..-|.+.+|...-.
T Consensus 110 S-~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 110 S-HDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred c-CCCCeEEEcCCCceeEEEEeeec
Confidence 6 99999999999999999998643
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0082 Score=70.42 Aligned_cols=155 Identities=8% Similarity=0.022 Sum_probs=97.4
Q ss_pred CeEEEEEecCCCE-EEEEEC---CCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEE-eCCCcEEEEEEeCCCCe
Q 001621 78 PYKNLEFLQNQGF-LISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGK 152 (1043)
Q Consensus 78 ~V~~l~Fs~d~~~-Lvs~s~---d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG-~~dG~v~v~~~d~~~~~ 152 (1043)
.+..-.|+||+.. ++..+. +..|.++|+.+++.......++.+.+..++|||+.++.. +.+|.-.+|.++.+.+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6778999999875 443343 356999999998766555566777788899999877654 44666667777765554
Q ss_pred EeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECC-C--eEEEEEccCCeEEEEeCCccccccccccc
Q 001621 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSEAQIIFVGGGKDLQLKDGVVD 229 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~d-g--~I~lWd~~~~~~~~~~~~~~~~~~~~~~~ 229 (1043)
... +.. +........|+|+ |++|+..+.. | .|.+.|+.+++..+....
T Consensus 269 ~~~----LT~------------~~~~d~~p~~SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------- 319 (419)
T PRK04043 269 LTQ----ITN------------YPGIDVNGNFVED--DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------- 319 (419)
T ss_pred EEE----ccc------------CCCccCccEECCC--CCEEEEEECCCCCceEEEEECCCCCeEeCccC-----------
Confidence 331 110 0111234479994 8777766543 3 577778777665322100
Q ss_pred CCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcC---------CcEEEEcCCCCC
Q 001621 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---------GDILLWNTSTTA 283 (1043)
Q Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~D---------G~I~iWd~~tg~ 283 (1043)
| .. ...|+ |+|+.|+..... ..|.+.|+.++.
T Consensus 320 ---------g---------~~---~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 320 ---------G---------KN---NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred ---------C---------Cc---CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 0 11 13685 999998877654 256677776664
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00062 Score=81.16 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=122.0
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce-EEEecCCCCCeEEEEEecCCCEEEEEECCCc-----EEEEECCCC--
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNE-----IQVWSLESR-- 108 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~-~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~-----I~vWdl~t~-- 108 (1043)
.++| +++.+..+|.|+.+|+|.+++..-.. .-+......-|..|....+..+|++++.|.. |++||++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 5555 69999999999999999998764333 1122212224666666666679999997754 899999764
Q ss_pred ----ceeE--Ee---ec---CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCC
Q 001621 109 ----SLAC--CL---KW---ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1043)
Q Consensus 109 ----~~l~--~~---~~---~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1043)
+++. .+ .. +.++++++++.+...+++|..+|.|..+.=|.-+.+-+. .. ......
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr--~~-----------~~~~~~ 171 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR--QD-----------YSHRGK 171 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc--ee-----------eeccCC
Confidence 2331 11 11 368899999999999999999998755443322211110 00 111235
Q ss_pred CCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEE
Q 001621 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1043)
Q Consensus 177 ~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl 255 (1043)
.||+++.+.-+ +..++-+.....|.+|.+....+ .+.+.. +...+.|.
T Consensus 172 ~pITgL~~~~d--~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~-----------------------------~G~~lnCs 220 (933)
T KOG2114|consen 172 EPITGLALRSD--GKSVLFVATTEQVMLYSLSGRTPSLKVLDN-----------------------------NGISLNCS 220 (933)
T ss_pred CCceeeEEecC--CceeEEEEecceeEEEEecCCCcceeeecc-----------------------------CCccceee
Confidence 79999999863 65433344455678898874331 121211 13456666
Q ss_pred EEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 256 CWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 256 ~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
.++ +....+++++. ..|.+++...
T Consensus 221 s~~-~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 221 SFS-DGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred ecC-CCCccEEEecC-ceEEEEcCCC
Confidence 664 43333555543 5688999763
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.86 E-value=0.0076 Score=69.97 Aligned_cols=193 Identities=12% Similarity=0.152 Sum_probs=113.7
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEE---
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITA--- 122 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vta--- 122 (1043)
++..+.+++.+|.++.||..+++.++.......+...-... ++.++..+.++.|..||.++|+.+..+........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 35677788899999999988777776554333332211222 35678888899999999999998877654432211
Q ss_pred ---EEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECC
Q 001621 123 ---FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1043)
Q Consensus 123 ---v~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~d 199 (1043)
..+ .+..++++..+|.+ ..+|...++.. |..... ...+ .........+.-+|.-.+..++++..+
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v--~ald~~tG~~~---W~~~~~---~~~g--~~~~~~~~~~~~~p~~~~~~vy~~~~~ 250 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKL--VALDLQTGQPL---WEQRVA---LPKG--RTELERLVDVDGDPVVDGGQVYAVSYQ 250 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEE--EEEEccCCCEe---eeeccc---cCCC--CCchhhhhccCCccEEECCEEEEEEcC
Confidence 111 13578889888866 45555445443 221100 0000 000000011111111012358888889
Q ss_pred CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 200 ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 200 g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
|.+..||..+++.+..... ....+.. ..+.+|++++.||.|..+|.
T Consensus 251 g~l~a~d~~tG~~~W~~~~-------------------------------~~~~~p~---~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRDA-------------------------------SSYQGPA---VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CEEEEEECCCCcEEEeecc-------------------------------CCccCce---EeCCEEEEECCCCeEEEEEC
Confidence 9999999999987654321 0011112 23567888889999999999
Q ss_pred CCCCcc
Q 001621 280 STTAST 285 (1043)
Q Consensus 280 ~tg~~~ 285 (1043)
.+++.+
T Consensus 297 ~tG~~~ 302 (377)
T TIGR03300 297 RSGSEL 302 (377)
T ss_pred CCCcEE
Confidence 888654
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=3.7e-05 Score=86.04 Aligned_cols=211 Identities=14% Similarity=0.180 Sum_probs=139.0
Q ss_pred ceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC-------ceEEEecC-CCCCeEEEEEecCCCEEEEEECC
Q 001621 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-------IEGLLISP-SQLPYKNLEFLQNQGFLISITND 97 (1043)
Q Consensus 26 ~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~-------~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~d 97 (1043)
++..+..||+..|.+++--.+.+-+.+++.|.+|++|.... ..+.++.. |+.+|..+.|..+-+++++ .|
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 45666779999998887655666678999999999997531 12344443 5679999999998766655 58
Q ss_pred CcEEEEECCCCceeEEeec---CCCEEEEEEeC--CCCEEEEE-eCCCcEEEEEEeCCCCeEeeeceeecccccccccCC
Q 001621 98 NEIQVWSLESRSLACCLKW---ESNITAFSVIS--GSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1043)
Q Consensus 98 ~~I~vWdl~t~~~l~~~~~---~~~Vtav~~sp--~~~~l~vG-~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1043)
+-|.+||---++++..+.+ ++.++-+.--+ +...+..| +...+|++++-.. +...- .+++.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs--ce~~~-E~kVcn--------- 871 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS--CEWTC-ELKVCN--------- 871 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc--cccee-eEEecc---------
Confidence 8999999888888775543 23333333323 34555555 5567787765433 21110 122211
Q ss_pred CCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCC
Q 001621 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1043)
Q Consensus 172 ~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 251 (1043)
..+...-+.+++..|. |+.++++-.+|+|.+.|.++|+++..... .+..
T Consensus 872 a~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrp-----------------------------mecd 920 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRP-----------------------------MECD 920 (1034)
T ss_pred CCCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCc-----------------------------ccch
Confidence 1123456788888885 88899999999999999999998865422 0122
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEE-EcCCCCC
Q 001621 252 ISALCWASSSGSILAVGYIDGDILL-WNTSTTA 283 (1043)
Q Consensus 252 V~sl~w~sp~g~~l~tg~~DG~I~i-Wd~~tg~ 283 (1043)
...++ -|..+.++....|.++.+ |-..++.
T Consensus 921 llqla--apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 921 LLQLA--APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred hhhhc--CchhHHHHhhcccceeEeeehhcCCe
Confidence 22333 266677777777888887 8776553
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.84 E-value=0.00012 Score=75.82 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=82.2
Q ss_pred CEEEEEEcCC-CcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCce
Q 001621 605 PVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE 683 (1043)
Q Consensus 605 ~Vt~la~s~d-g~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~ 683 (1043)
.|++++-.|. ...+++|++||.|.+||.+...... .+...+.+++..+.|.|.. ++.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHpk~-------------------p~~- 238 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHPKN-------------------PEH- 238 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccCCC-------------------chh-
Confidence 3999999986 4578999999999999999763321 1112366889999997532 223
Q ss_pred EEEEeccCceEEEEcCCCCCeeecCCCCcCCCceeEEEEEe-ccEEEEeeCcccCCCcceeeecccCCcceeEEeeeecc
Q 001621 684 VIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI-DSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKDE 762 (1043)
Q Consensus 684 ~l~~gt~dg~I~~~d~~~g~~l~~~~~~~~~~~~a~~~~v~-~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~~ 762 (1043)
||++++||.+--||+.+ ..|++. .+..+-+.=+++-.. +.|+|=.+ . ...-..+..| +-
T Consensus 239 -Lft~sedGslw~wdas~-~~l~i~-~~~s~~s~WLsgD~v~s~i~i~~l---l------------~~~~~Sinsf--DV 298 (319)
T KOG4714|consen 239 -LFTCSEDGSLWHWDAST-TFLSIS-NQASVISSWLSGDPVKSRIEITSL---L------------PSRSLSINSF--DV 298 (319)
T ss_pred -eeEecCCCcEEEEcCCC-ceEEec-CccccccccccCCcccceEeeecc---c------------cccceeeeee--ec
Confidence 99999999999999876 444433 111111111111000 11222111 1 1111122222 66
Q ss_pred eeEEEEEEEeeCcEEEEe
Q 001621 763 KVCGLLLLFQTGAVQIRS 780 (1043)
Q Consensus 763 ~~~~Lv~~~~dG~i~i~s 780 (1043)
+|..|||+...+.|.++.
T Consensus 299 ~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 299 LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCceEEeccccceEEEec
Confidence 889999999999998763
No 296
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.0002 Score=83.59 Aligned_cols=141 Identities=19% Similarity=0.281 Sum_probs=99.8
Q ss_pred ccccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecC
Q 001621 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 488 ~~~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~ 567 (1043)
++++...+.+++-|+.-|.|++++-..+.+..+. ..+-.+.+.....+++..++|.|+..|.|-||.++.
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhccc----------ccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 3457777889999999999999998888743221 123345677788999999999999999999999876
Q ss_pred CCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCC--
Q 001621 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-- 645 (1043)
Q Consensus 568 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~-- 645 (1043)
....... ++ .. .-..|...||||+||+||..|.+|...|.|....+... ..+......
T Consensus 108 ~~p~~~~-~~----------t~--------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il 167 (726)
T KOG3621|consen 108 ELPRDLD-YV----------TP--------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEIL 167 (726)
T ss_pred cCCCcce-ee----------cc--------ccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceee
Confidence 4221111 10 00 01238889999999999999999999999999988772 111111110
Q ss_pred CCCCCeEEEEEEe
Q 001621 646 GSSSPIISMTWTE 658 (1043)
Q Consensus 646 ~~~~~V~sl~fs~ 658 (1043)
...++|..|.+.+
T Consensus 168 ~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 168 SEDSEIVQLDYLQ 180 (726)
T ss_pred ccCcceEEeeccc
Confidence 1357788888763
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.77 E-value=0.027 Score=64.00 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=71.0
Q ss_pred ccCCCCcE--EEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEe---cCccEEEEE
Q 001621 490 KCHSVDRV--YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN---EFGLVYIYN 564 (1043)
Q Consensus 490 ~~s~~~~~--l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~---~dG~V~i~~ 564 (1043)
.+.|.++. +++|..+-++.++|+...- . +. .+..+=+.+-|||..+++++++ ..|.+-+|+
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-~--~~-----------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGNL-R--FY-----------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred eecccCCceeEEecccccceeecccccce-E--Ee-----------cCCcccccccccCcccEEEEecCCccccceEEec
Confidence 45555544 5566788999999987652 1 11 2233556789999999998865 458999999
Q ss_pred ecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeC------CCeEEEEEcCCce
Q 001621 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLS 636 (1043)
Q Consensus 565 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~------dg~V~vwD~~~~~ 636 (1043)
....- .+...+.+.+ .+-+.|||||+++-+.+. |..|.|||+.+..
T Consensus 347 ~~~rf------------------------~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 347 PAGRF------------------------KVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred cCCce------------------------EEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 76531 1111233332 344679999998877653 6779999987654
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.71 E-value=8e-05 Score=55.47 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=31.2
Q ss_pred ecCCCCCeEEEEEecCCCeEEEEecCccEEEEE
Q 001621 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 532 ~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~ 564 (1043)
+.+|..+|++|+|+|++..|++|+.||.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 458999999999999999999999999999997
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.66 E-value=0.0067 Score=65.22 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=116.0
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-ecC----CCE
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE----SNI 120 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~-~~~----~~V 120 (1043)
++..+.+++.++.|+.||..+++.+.......++...... +++.++.++.++.|..+|..+|+.+... ... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-cccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 5666777789999999999877777655433332222223 3356788888999999999999998884 322 122
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCe-EEEEecCCCCCCEEEEEECC
Q 001621 121 TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV-VGVLPHPNSSGNRVLIAYEN 199 (1043)
Q Consensus 121 tav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V-~sl~~sp~d~g~~ll~~~~d 199 (1043)
.......+++.++++..+|.| +.+|...+++. +..+...- . ..........+ ..+.+. ++ .+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l--~~~d~~tG~~~---w~~~~~~~-~-~~~~~~~~~~~~~~~~~~---~~-~v~~~~~~ 182 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKL--VALDPKTGKLL---WKYPVGEP-R-GSSPISSFSDINGSPVIS---DG-RVYVSSGD 182 (238)
T ss_dssp --SEEEEETTEEEEEETCSEE--EEEETTTTEEE---EEEESSTT---SS--EEEETTEEEEEECC---TT-EEEEECCT
T ss_pred cccCceEecCEEEEEeccCcE--EEEecCCCcEE---EEeecCCC-C-CCcceeeecccccceEEE---CC-EEEEEcCC
Confidence 333344448899999988866 55666667665 22221000 0 00000000111 222222 24 57777778
Q ss_pred Ce-EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEc
Q 001621 200 AL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1043)
Q Consensus 200 g~-I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd 278 (1043)
|. +.+ |+.+++.+.... ...+..+ .. ..+..|++++.||.|..||
T Consensus 183 g~~~~~-d~~tg~~~w~~~-------------------------------~~~~~~~-~~-~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-------------------------------ISGIYSL-PS-VDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-------------------------------SS-ECEC-EE-CCCTEEEEEETTTEEEEEE
T ss_pred CeEEEE-ECCCCCEEEEec-------------------------------CCCccCC-ce-eeCCEEEEEeCCCEEEEEE
Confidence 84 555 999998653211 1112221 22 6778888888999999999
Q ss_pred CCCCCc
Q 001621 279 TSTTAS 284 (1043)
Q Consensus 279 ~~tg~~ 284 (1043)
+.+|+.
T Consensus 229 ~~tG~~ 234 (238)
T PF13360_consen 229 LKTGKV 234 (238)
T ss_dssp TTTTEE
T ss_pred CCCCCE
Confidence 998863
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=3.2e-05 Score=91.05 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=128.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCC-C
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLES-R 108 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~--~I~vWdl~t-~ 108 (1043)
.+...-+|+||+-..+.|++|+..|.|++|++..+.-.-.. -|+.+|+.+.=+.||..+++.+.-. ...+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 45677899999999999999999999999998765433222 2567899999999987777665433 478999864 5
Q ss_pred ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 109 ~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
.+.+++... .++.|+.....-++|+..-...|+++.+ +...+ .|--+ ..+ ..-.=.+..|+|+|
T Consensus 1179 ~~~Hsf~ed---~~vkFsn~~q~r~~gt~~d~a~~YDvqT--~~~l~-tylt~------~~~----~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1179 GPRHSFDED---KAVKFSNSLQFRALGTEADDALLYDVQT--CSPLQ-TYLTD------TVT----SSYSNNLAHFSPCD 1242 (1516)
T ss_pred Ccccccccc---ceeehhhhHHHHHhcccccceEEEeccc--CcHHH-HhcCc------chh----hhhhccccccCCCc
Confidence 666666543 4677887777777888766565655443 32211 01111 000 01112667899973
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
+ |+ ..||. |||++..+.+..|.. + .-.+ .-.|+ |+|..++.-
T Consensus 1243 --~-LI--lndGv--LWDvR~~~aIh~FD~----f-------------------------t~~~-~G~FH-P~g~eVIIN 1284 (1516)
T KOG1832|consen 1243 --T-LI--LNDGV--LWDVRIPEAIHRFDQ----F-------------------------TDYG-GGGFH-PSGNEVIIN 1284 (1516)
T ss_pred --c-eE--eeCce--eeeeccHHHHhhhhh----h-------------------------eecc-ccccc-CCCceEEee
Confidence 3 22 35776 899998877766532 0 0001 11376 999998877
Q ss_pred EcCCcEEEEcCCCCCccc
Q 001621 269 YIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 269 ~~DG~I~iWd~~tg~~~~ 286 (1043)
++ +||+.|-++..
T Consensus 1285 SE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1285 SE-----IWDMRTFKLLH 1297 (1516)
T ss_pred ch-----hhhhHHHHHHh
Confidence 65 89998876554
No 301
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.64 E-value=0.0012 Score=76.58 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=70.6
Q ss_pred EEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeee
Q 001621 508 RIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHAL 587 (1043)
Q Consensus 508 riWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~ 587 (1043)
.+|+...+.++..... .+ .....|.+.+++|+...|+.|..||+|++||...+..
T Consensus 239 ciYE~~r~klqrvsvt-----si---pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----------------- 293 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVT-----SI---PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----------------- 293 (545)
T ss_pred EEEEeecCceeEEEEE-----EE---ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----------------
Confidence 4566666554433222 22 2335899999999999999999999999999866421
Q ss_pred cCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEE
Q 001621 588 PEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1043)
Q Consensus 588 ~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l 638 (1043)
.+..+.-..+.++|+|+|..+++|+..|.+.+||+.-..+-
T Consensus 294 ----------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 294 ----------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ----------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 11223345789999999999999999999999998654443
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.63 E-value=0.09 Score=57.03 Aligned_cols=194 Identities=17% Similarity=0.155 Sum_probs=120.7
Q ss_pred EEEEcC-CCCEEEEEEcCCcEEEEcCCCceEE-EecCCCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 40 ILAFDH-IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFL-QNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 40 ~lafsp-~g~lLAvgt~dG~I~v~~~~~~~~~-~~~~~~~~V~~l~Fs-~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
+.+|++ +|.++.+-...|+|+.|+..+.+.. +..+. ...+.+. ++ +.|+.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 7788888878899999998776654 34433 6677777 56 6677776654 45569999865433322
Q ss_pred ------CCCEEEEEEeCCCCEEEEEeCCCc------EEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 117 ------ESNITAFSVISGSHFMYIGDENGL------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 117 ------~~~Vtav~~sp~~~~l~vG~~dG~------v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
....+.++++|+|++.++...... =+||.++.+ ++.... .. .......|+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~-------------~~~~pNGi~~ 141 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---AD-------------GLGFPNGIAF 141 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EE-------------EESSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ec-------------CcccccceEE
Confidence 246789999999995444333211 145777765 443311 00 1234589999
Q ss_pred cCCCCCCEEEE-EECCCeEEEEEccCCe--EE--EEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 185 HPNSSGNRVLI-AYENALVILWDVSEAQ--II--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 185 sp~d~g~~ll~-~~~dg~I~lWd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
+|+ ++.|.+ -+..+.|..|++.... .. ..+. +.+ . .....-.+++.
T Consensus 142 s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~--------~~~---~---------------~~g~pDG~~vD- 192 (246)
T PF08450_consen 142 SPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFI--------DFP---G---------------GPGYPDGLAVD- 192 (246)
T ss_dssp ETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--------E-S---S---------------SSCEEEEEEEB-
T ss_pred CCc--chheeecccccceeEEEeccccccceeeeeeEE--------EcC---C---------------CCcCCCcceEc-
Confidence 995 765654 4557788888886322 21 1110 000 0 01236678886
Q ss_pred CCCCEEEEEEcCCcEEEEcCCCCCcc
Q 001621 260 SSGSILAVGYIDGDILLWNTSTTAST 285 (1043)
Q Consensus 260 p~g~~l~tg~~DG~I~iWd~~tg~~~ 285 (1043)
.+|...++....+.|.++|.. |+.+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 899998888899999999976 6543
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.58 E-value=0.032 Score=60.49 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=111.9
Q ss_pred eEEEEEc-CCCCEEEEEEcCCcEEEEcCCCc--eEEEecC----CCCCeEEEEEecCCCEEEEEECC--------CcEEE
Q 001621 38 ASILAFD-HIQRLLAIATLDGRIKVIGGDGI--EGLLISP----SQLPYKNLEFLQNQGFLISITND--------NEIQV 102 (1043)
Q Consensus 38 v~~lafs-p~g~lLAvgt~dG~I~v~~~~~~--~~~~~~~----~~~~V~~l~Fs~d~~~Lvs~s~d--------~~I~v 102 (1043)
...++++ ++ ..|.++... .+.++|.... +.+.... .......+++.++|...++.... +.|..
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777888 55 555555554 5566676544 3334332 23467899999998755555433 45777
Q ss_pred EECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEE
Q 001621 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1043)
Q Consensus 103 Wdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1043)
++.. ++.......-...+.++++|+++.||+... .+.|..++++.+...+.. +..+. ......+..-.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~-~~~~~---------~~~~~~g~pDG 188 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN-RRVFI---------DFPGGPGYPDG 188 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE-EEEEE---------E-SSSSCEEEE
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceee-eeeEE---------EcCCCCcCCCc
Confidence 7777 554433333456789999999999987655 454544444444432321 01110 00011134678
Q ss_pred EEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCC
Q 001621 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1043)
Q Consensus 182 l~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~ 261 (1043)
+++.. +|+..++.+..+.|.++|.. ++.+..+.- + ...+++++|..++
T Consensus 189 ~~vD~--~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---------p--------------------~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 189 LAVDS--DGNLWVADWGGGRIVVFDPD-GKLLREIEL---------P--------------------VPRPTNCAFGGPD 236 (246)
T ss_dssp EEEBT--TS-EEEEEETTTEEEEEETT-SCEEEEEE----------S--------------------SSSEEEEEEESTT
T ss_pred ceEcC--CCCEEEEEcCCCEEEEECCC-ccEEEEEcC---------C--------------------CCCEEEEEEECCC
Confidence 88887 58866777789999999987 777665522 1 3478999996577
Q ss_pred CCEEEEEE
Q 001621 262 GSILAVGY 269 (1043)
Q Consensus 262 g~~l~tg~ 269 (1043)
...|...+
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 77665543
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.54 E-value=0.0029 Score=73.40 Aligned_cols=75 Identities=17% Similarity=0.426 Sum_probs=59.9
Q ss_pred CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEE
Q 001621 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1043)
Q Consensus 175 ~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~s 254 (1043)
..+.|.+.+++|. ...+++|+.||.|++||...+...... . .-.++.
T Consensus 258 L~s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~~t~~~k-a------------------------------~~~P~~ 304 (545)
T PF11768_consen 258 LPSQVICCARSPS--EDKLVLGCEDGSIILYDTTRGVTLLAK-A------------------------------EFIPTL 304 (545)
T ss_pred cCCcceEEecCcc--cceEEEEecCCeEEEEEcCCCeeeeee-e------------------------------cccceE
Confidence 3578999999996 456999999999999998776443221 0 233678
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEcCCCCC
Q 001621 255 LCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 255 l~w~sp~g~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
++|+ |+|..+++|+.-|.|.+||+.-..
T Consensus 305 iaWH-p~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 305 IAWH-PDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEc-CCCcEEEEEcCCceEEEEEeecCc
Confidence 9997 999999999999999999986543
No 305
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0046 Score=65.51 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=103.9
Q ss_pred CCC-EEEEEEcCCcEEEEcCCCceEEEecCC----CC---CeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE--Eee
Q 001621 46 IQR-LLAIATLDGRIKVIGGDGIEGLLISPS----QL---PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC--CLK 115 (1043)
Q Consensus 46 ~g~-lLAvgt~dG~I~v~~~~~~~~~~~~~~----~~---~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~--~~~ 115 (1043)
+|. .|+.+-.+|.|.+|..+..+....+.. +. -..++.|++.+..+++...+|.+.+-+.....+.. +++
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk 162 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK 162 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc
Confidence 344 677788889999987654443322221 11 24477889888889999999999977665554444 444
Q ss_pred cC-CCEEEEEEeC-CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEE
Q 001621 116 WE-SNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1043)
Q Consensus 116 ~~-~~Vtav~~sp-~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~l 193 (1043)
.| -+.+..+|+. +-+.+|+|++||.+.-|++.... ++. .. ..+.|...|++|.-+|. .+..+
T Consensus 163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i-----~~---------n~kvH~~GV~SI~ss~~-~~~~I 226 (339)
T KOG0280|consen 163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI-----WH---------NSKVHTSGVVSIYSSPP-KPTYI 226 (339)
T ss_pred ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee-----ee---------cceeeecceEEEecCCC-CCceE
Confidence 33 4566667763 34789999999999988876321 222 11 12346788999999886 46779
Q ss_pred EEEECCCeEEEEEccC-CeEE
Q 001621 194 LIAYENALVILWDVSE-AQII 213 (1043)
Q Consensus 194 l~~~~dg~I~lWd~~~-~~~~ 213 (1043)
++|+-|-.|++||.+. ++++
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred EEeccccceeeeehhcccCcc
Confidence 9999999999999984 4444
No 306
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.52 E-value=0.0011 Score=71.29 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=118.7
Q ss_pred cceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC--ceE--EEecCC-----CCCeEEEEEecCCC-EEEEE
Q 001621 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG--IEG--LLISPS-----QLPYKNLEFLQNQG-FLISI 94 (1043)
Q Consensus 25 ~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~--~~~--~~~~~~-----~~~V~~l~Fs~d~~-~Lvs~ 94 (1043)
.++.....+|+..|+.+.++.|+..+.++ .|=+|.+|...- ... +-.-|+ ..-|++-.|+|... .++-.
T Consensus 154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 46677778899999999999999998887 578999998642 222 112222 24688899999654 45556
Q ss_pred ECCCcEEEEECCCCceeEE----ee---cC----------CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeec
Q 001621 95 TNDNEIQVWSLESRSLACC----LK---WE----------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1043)
Q Consensus 95 s~d~~I~vWdl~t~~~l~~----~~---~~----------~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~ 157 (1043)
+..|+|++-|++...+.-. +. .+ ..|..+.|+++|+||++-+- -+|+||++..+.+.+.-
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t-- 309 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET-- 309 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE--
Confidence 6799999999986543211 11 00 36889999999999987643 56999999876554432
Q ss_pred eeecccccccccCCCCC-CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCe
Q 001621 158 YNISADALSEKAGFPLL-SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1043)
Q Consensus 158 ~~i~~~~~~~~~~~~~~-~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~ 211 (1043)
|.+......+....-.. ..-.=.-++|+-+ +.++++|+-+..++++++..|.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~--~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGN--DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCC--cceEecccccceEEEecCCCCc
Confidence 44432211110000000 0111245677764 5579999999999999987664
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00027 Score=75.94 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=104.8
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccc
Q 001621 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1043)
++=++++.+..|-+-|++||... .+...+.|-++.|...+++++.|+.+|.|-++|+... ..-..+... .
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r---nqG~~~~a~------r 294 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR---NQGNGWCAQ------R 294 (425)
T ss_pred eeeecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeec---ccCCCcceE------E
Confidence 34477778888999999988533 3446678999999999999999999999876665442 000001100 0
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeE---EEEeCCcccccccccccCCCCCCCCcccCccCC
Q 001621 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1043)
Q Consensus 169 ~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (1043)
--|.+.|+++..-.. +...|++..-+|.|.|||.+--+. +...++ |+.
T Consensus 295 ----lyh~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-------HvN----------------- 345 (425)
T KOG2695|consen 295 ----LYHDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-------HVN----------------- 345 (425)
T ss_pred ----EEcCcchhhhhhhcc-ccceEeeccCcCceeEeeehhhhcccceeeeec-------ccc-----------------
Confidence 125678888876543 244688888999999999987665 444433 321
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCCCCcccc
Q 001621 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKG 287 (1043)
Q Consensus 246 ~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~tg~~~~~ 287 (1043)
....+- +-. .+....|++++.|-..+||.+.++.+..+
T Consensus 346 --~~a~l~-~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 346 --LSAYLP-AHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred --cccccc-ccc-ccccceEEEccCeeEEEEEecccCceeec
Confidence 011111 112 26667888899999999999999987654
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0035 Score=68.99 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCC-CCEEEEEeCCCcEEEEEEeC
Q 001621 75 SQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDA 148 (1043)
Q Consensus 75 ~~~~V~~l~Fs~d~-~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~-~~~l~vG~~dG~v~v~~~d~ 148 (1043)
+...|+.|+|+|.. +.|..++-++.|.|.|+++...+.++..+..+++++++-+ .+++|.|..+|.|.|+|+..
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 35579999999954 5789999999999999999999999988899999999876 56899999999998887654
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.00051 Score=80.07 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=91.7
Q ss_pred ceeeecccCCCCeEEEEEcCCC-CEEEEEEcCCcEEEEcCCCceEEE-ec-CCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 001621 26 LRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLL-IS-PSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1043)
Q Consensus 26 ~~~~~~~G~~~~v~~lafsp~g-~lLAvgt~dG~I~v~~~~~~~~~~-~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~v 102 (1043)
......+||...++.+.|.|.. ..||+++.|-.|+.||......-+ .. .-+..-..+.|+.-.+.+++.+..+.|.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3345667999999999999975 699999999999999986654322 22 12345567778765566778888999999
Q ss_pred EECCCC-ceeEEeecC-CCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCC
Q 001621 103 WSLESR-SLACCLKWE-SNITAFSVISGS-HFMYIGDENGLMSVIKYDAD 149 (1043)
Q Consensus 103 Wdl~t~-~~l~~~~~~-~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~ 149 (1043)
||++.| .++++++.+ ..|+.++|...- ..+.+.+.||+|+.|+|+..
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999976 577888765 566777665432 23556778999999999753
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.00045 Score=74.23 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=108.5
Q ss_pred eCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCC
Q 001621 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK 581 (1043)
Q Consensus 502 ~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~ 581 (1043)
+.+-.|-+=|+.++--+ .+ ...+.|.++.|...+.++..|...|.|.++|+.... .|+
T Consensus 231 G~sqqv~L~nvetg~~q---sf----------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-qG~-------- 288 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQ---SF----------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-QGN-------- 288 (425)
T ss_pred cccceeEEEEeeccccc---cc----------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc-cCC--------
Confidence 33556777777776511 11 123579999999989999999999999999998642 111
Q ss_pred CceeeecCCCcceeeEEecCCCCCEEEEEEcC-CCcEEEEEeCCCeEEEEEcCCceE---EEEeecCCCCCCCeEEEEEE
Q 001621 582 SEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSV---LFFTDDISGSSSPIISMTWT 657 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~-dg~~lA~Gs~dg~V~vwD~~~~~~---l~~~~~~~~~~~~V~sl~fs 657 (1043)
+-. ..---|.+.||+|..-. ++++|.+.+.+|+|.+||++--++ +.+ + .+.|...++-
T Consensus 289 ----------~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q--Y----eGHvN~~a~l 350 (425)
T KOG2695|consen 289 ----------GWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ--Y----EGHVNLSAYL 350 (425)
T ss_pred ----------Ccc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee--e----eccccccccc
Confidence 101 11135899999999888 889999999999999999986544 322 1 2334445554
Q ss_pred eecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCCCC
Q 001621 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWH 711 (1043)
Q Consensus 658 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~~~ 711 (1043)
+... +..+.+++++.+|-..++|...+|.++.+.|..
T Consensus 351 ~~~v-----------------~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHV-----------------KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccc-----------------ccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 3321 233466899999999999999999999888543
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.36 E-value=0.0018 Score=67.40 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=91.8
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCceEE-EecC--C--CC---CeEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe
Q 001621 44 DHIQRLLAIATLDGRIKVIGGDGIEGL-LISP--S--QL---PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-CCL 114 (1043)
Q Consensus 44 sp~g~lLAvgt~dG~I~v~~~~~~~~~-~~~~--~--~~---~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l-~~~ 114 (1043)
+--+.-+++|..||.+-+++.+....+ ...+ + .. -+....|.-.++ ......-+..+.|+++..+.+ ...
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~-~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG-CGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC-cceEeeccceeeecccccccccccc
Confidence 335677889999999999987652111 0111 0 11 122222222211 222333445667777654332 222
Q ss_pred ecCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEE
Q 001621 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1043)
Q Consensus 115 ~~~~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~l 193 (1043)
.....|++++.+|.. +.+++|+++|.+-+|+.... . .|...+ ..|..++.-|.|||.+ +..|
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----~-----~p~S~l-------~ahk~~i~eV~FHpk~-p~~L 239 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----A-----MPVSLL-------KAHKAEIWEVHFHPKN-PEHL 239 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccc----c-----chHHHH-------HHhhhhhhheeccCCC-chhe
Confidence 223459999999975 46789999999999987652 1 111111 3567899999999985 5569
Q ss_pred EEEECCCeEEEEEccC
Q 001621 194 LIAYENALVILWDVSE 209 (1043)
Q Consensus 194 l~~~~dg~I~lWd~~~ 209 (1043)
+++++||.+.-||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999764
No 312
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.34 E-value=0.014 Score=61.08 Aligned_cols=153 Identities=9% Similarity=-0.026 Sum_probs=100.1
Q ss_pred EEEEEcCCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--ceeEEee--cCCCEEEEE
Q 001621 50 LAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCLK--WESNITAFS 124 (1043)
Q Consensus 50 LAvgt~dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~--~~l~~~~--~~~~Vtav~ 124 (1043)
+-.++.|.++++++.+........+. ...+..++.++|+.++++++..+.|..+.+..- ..+.... ....=-+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 34556666666665543322222221 134788999999999999999999999998753 2333222 223345677
Q ss_pred EeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEE
Q 001621 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL 204 (1043)
Q Consensus 125 ~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~l 204 (1043)
|+.....+|++++||++.||++......+. . +.. ....|.+.+..+.|+|...-.+|++.-.-+.+.+
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-----~------~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMA-----E------ISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchh-----h------hcc-cCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 888889999999999999999865322111 1 110 1124788999999998533344555555567889
Q ss_pred EEccCCeEEE
Q 001621 205 WDVSEAQIIF 214 (1043)
Q Consensus 205 Wd~~~~~~~~ 214 (1043)
-|+++.+-.+
T Consensus 279 ~D~R~~~~~q 288 (344)
T KOG4532|consen 279 VDTRNYVNHQ 288 (344)
T ss_pred EEcccCceee
Confidence 9999876543
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.32 E-value=0.015 Score=62.56 Aligned_cols=145 Identities=13% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCceEEEecCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE
Q 001621 56 DGRIKVIGGDGIEGLLISPSQLPYKNLE--FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1043)
Q Consensus 56 dG~I~v~~~~~~~~~~~~~~~~~V~~l~--Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~ 133 (1043)
+|+|..||..+.+.+........+.... ..++++++++++.++.|..||..+|+.+.++..++.+... ....+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccccc
Confidence 6889999987777776554321122111 4445578888899999999999999999888765432222 234566778
Q ss_pred EEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEE
Q 001621 134 IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1043)
Q Consensus 134 vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~ 213 (1043)
+++.++ +++.+|...+++. |++... . .+...........+. +.+++++..++.|..+|.++|+.+
T Consensus 81 v~~~~~--~l~~~d~~tG~~~---W~~~~~---~---~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 81 VGTSDG--SLYALDAKTGKVL---WSIYLT---S---SPPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTS--EEEEEETTTSCEE---EEEEE----S---SCTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccee--eeEecccCCccee---eeeccc---c---ccccccccccCceEe----cCEEEEEeccCcEEEEecCCCcEE
Confidence 888888 4566776666665 332100 0 000010111122222 456888888999999999999987
Q ss_pred EEe
Q 001621 214 FVG 216 (1043)
Q Consensus 214 ~~~ 216 (1043)
...
T Consensus 146 w~~ 148 (238)
T PF13360_consen 146 WKY 148 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 314
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00084 Score=77.73 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=74.6
Q ss_pred CeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEE-EEEEcCCCc
Q 001621 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSGA 616 (1043)
Q Consensus 538 ~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt-~la~s~dg~ 616 (1043)
.|.-+.|+|.-.++|.++.+|.|.++.++-.+ ...+.-|.-+|+ +++|-|||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR--------------------------lwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQR--------------------------LWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccce--------------------------eEeccCCCCccceeeeecCCCC
Confidence 58889999999999999999999999987321 123455677777 999999999
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEE
Q 001621 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1043)
Q Consensus 617 ~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs 657 (1043)
+||+|..||+|++.|++++..+..... ....+|.++.|+
T Consensus 76 llaVg~kdG~I~L~Dve~~~~l~~~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 76 LLAVGFKDGTIRLHDVEKGGRLVSFLF--SVETDISKGIWD 114 (665)
T ss_pred EEEEEecCCeEEEEEccCCCceecccc--ccccchheeecc
Confidence 999999999999999999887765222 135678888886
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0014 Score=72.70 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=138.6
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc---eEEEec-CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEC
Q 001621 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLIS-PSQLPYKNLEFLQNQGFLISITN-DNEIQVWSL 105 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~---~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~-d~~I~vWdl 105 (1043)
.|-|...|+.+.-. -..++.+|+.||.++.|..... +.+..+ .|...|..++.+.++-.+.+++. |..++++|+
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 35566667766443 4578899999999999997553 333222 23457888888889777777676 999999999
Q ss_pred CCCceeEEee---cCCCEEEEEEeCCCC--EEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCe
Q 001621 106 ESRSLACCLK---WESNITAFSVISGSH--FMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1043)
Q Consensus 106 ~t~~~l~~~~---~~~~Vtav~~sp~~~--~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1043)
+.-..+.-+. .++.+..+ .+|... .++++. .+|.+.|+ |.... .. ....+..-|.+||
T Consensus 84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv--D~~~d-~~------------q~~~fkklH~sPV 147 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV--DGFGD-FC------------QDGYFKKLHFSPV 147 (558)
T ss_pred eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE--CCcCC-cC------------ccceecccccCce
Confidence 8876554443 33433332 233321 334433 45666554 33211 10 1111224578999
Q ss_pred EEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC-cccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 180 ~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
..+.++|. +.-+++....|.|.-|.... ..+.... -.+.++++. .+..-.......++++|+
T Consensus 148 ~~i~y~qa--~Ds~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eT-------------dLy~f~K~Kt~pts~Efs 210 (558)
T KOG0882|consen 148 KKIRYNQA--GDSAVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHET-------------DLYGFPKAKTEPTSFEFS 210 (558)
T ss_pred EEEEeecc--ccceeeccccceeEeecCCC--cccCccccccccccccc-------------hhhcccccccCccceEEc
Confidence 99999996 55577777889999999874 1111110 011122110 000001125567899996
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCCCcccc
Q 001621 259 SSSGSILAVGYIDGDILLWNTSTTASTKG 287 (1043)
Q Consensus 259 sp~g~~l~tg~~DG~I~iWd~~tg~~~~~ 287 (1043)
|+|..|.+-..|..|+++++.+|+..+.
T Consensus 211 -p~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 211 -PDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred -cccCcccccCcccEEEEEEeccchhhhh
Confidence 9999999999999999999999987663
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.035 Score=62.96 Aligned_cols=143 Identities=16% Similarity=0.249 Sum_probs=94.1
Q ss_pred CCEEEEEEc----------CCcEEEEcCCCc-------eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 001621 47 QRLLAIATL----------DGRIKVIGGDGI-------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1043)
Q Consensus 47 g~lLAvgt~----------dG~I~v~~~~~~-------~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~ 109 (1043)
..++++||. .|+|.+|..... +.+...+...+|.+|+-.. ++|++ +.++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~lv~-~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GRLVV-AVGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TEEEE-EETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CEEEE-eecCEEEEEEccCcc
Confidence 579999985 299999987652 2233334467899998774 34444 446899999999888
Q ss_pred -eeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 110 -LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 110 -~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
++..-..+..+....+...++++++|+....+.++.|+.+..++.. +..+ .....++++.|-++
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~----va~d----------~~~~~v~~~~~l~d- 183 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL----VARD----------YQPRWVTAAEFLVD- 183 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE----EEEE----------SS-BEEEEEEEE-S-
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE----EEec----------CCCccEEEEEEecC-
Confidence 6554444443333444444779999999999999999875444542 1100 11235788888764
Q ss_pred CCCEEEEEECCCeEEEEEcc
Q 001621 189 SGNRVLIAYENALVILWDVS 208 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~ 208 (1043)
++.++++..+|.+.++...
T Consensus 184 -~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 184 -EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -SSEEEEEETTSEEEEEEE-
T ss_pred -CcEEEEEcCCCeEEEEEEC
Confidence 2468999999999988876
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.17 E-value=0.081 Score=58.05 Aligned_cols=222 Identities=17% Similarity=0.173 Sum_probs=126.0
Q ss_pred CCCCeEEEEEcC-CCCEEEEEEcCCcEE-EEcCCCceEEEecC---CCCCeEEEEEecCCCEEEEEEC-----CCcEEEE
Q 001621 34 IPATASILAFDH-IQRLLAIATLDGRIK-VIGGDGIEGLLISP---SQLPYKNLEFLQNQGFLISITN-----DNEIQVW 103 (1043)
Q Consensus 34 ~~~~v~~lafsp-~g~lLAvgt~dG~I~-v~~~~~~~~~~~~~---~~~~V~~l~Fs~d~~~Lvs~s~-----d~~I~vW 103 (1043)
.|.....++.+| ....+|.+-.-|+-- +||..+.+....+. .+.-.-.-.|++||.+|++.=. .|.|-||
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 456667788999 667899999888755 58876665543332 2223446689999999998744 4789999
Q ss_pred ECC-CCceeEEeecCC-CEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee--e-c---ee-ecccccccccCCC-C
Q 001621 104 SLE-SRSLACCLKWES-NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ--L-P---YN-ISADALSEKAGFP-L 173 (1043)
Q Consensus 104 dl~-t~~~l~~~~~~~-~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~--~-~---~~-i~~~~~~~~~~~~-~ 173 (1043)
|.. +-+.+.++..++ .-..+.+.||++.|+++- |-|.-- -+..+.++.. | | |. ...-.+.+...++ .
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~Th-pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIETH-PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCccC-cccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 999 556677776542 234567899999888873 323110 0111111111 0 0 11 0000011111122 2
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECC-C-------eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCC
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYEN-A-------LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~d-g-------~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 245 (1043)
-|...|..|++.++ |. ++.+... | .|-+++ .+..+..+. .+ ... .
T Consensus 160 ~~~lSiRHLa~~~~--G~-V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~---------~p-------~~~------~ 212 (305)
T PF07433_consen 160 LHQLSIRHLAVDGD--GT-VAFAMQYQGDPGDAPPLVALHR--RGGALRLLP---------AP-------EEQ------W 212 (305)
T ss_pred ccccceeeEEecCC--Cc-EEEEEecCCCCCccCCeEEEEc--CCCcceecc---------CC-------hHH------H
Confidence 34567888888884 75 5555432 2 112222 111111110 00 000 0
Q ss_pred CCCCCCeEEEEEecCCCCEEEEEE-cCCcEEEEcCCCCCccc
Q 001621 246 QPEEKEISALCWASSSGSILAVGY-IDGDILLWNTSTTASTK 286 (1043)
Q Consensus 246 ~~~~~~V~sl~w~sp~g~~l~tg~-~DG~I~iWd~~tg~~~~ 286 (1043)
..-..-+-|++++ ++|..+++.+ .-|.+.+||..+++.+.
T Consensus 213 ~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 213 RRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred HhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 0015678899997 8988775554 67889999999988665
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.17 E-value=0.058 Score=58.20 Aligned_cols=175 Identities=15% Similarity=0.248 Sum_probs=102.8
Q ss_pred cccCCCCeEEEEEcCC-CCEEEEEEcCCcEEEEcCCCceEE--EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp~-g~lLAvgt~dG~I~v~~~~~~~~~--~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
..|....++.|+|+|+ +.+.|+....+.|.-++.++ +.+ ..+..-.-.-.|++..++.++++--.++.+.+.++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3577788999999997 55888888889998888753 343 3344445678888888876555544589999999843
Q ss_pred Cc------eeEEee--cC----CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCC--CeEeeeceeecccccccccCCCC
Q 001621 108 RS------LACCLK--WE----SNITAFSVISGSHFMYIGDENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGFPL 173 (1043)
Q Consensus 108 ~~------~l~~~~--~~----~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~ 173 (1043)
.. .+..+. .+ ..+-.++++|.++.++++-+..-..++.++... ..+.. ..... +.. ..
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~-~~~~~---~~~----~~ 167 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV-SDDQD---LDD----DK 167 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE-EE-HH---HH-----HT
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee-ccccc---ccc----cc
Confidence 21 122222 22 348899999999999999888777788877521 11110 00000 000 01
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
.....+.+++++|. .+++++.+.++..|..+| .+|+++..+
T Consensus 168 ~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 168 LFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp --SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 22345788999997 577667777788899999 667766544
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.15 E-value=0.075 Score=58.30 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=99.9
Q ss_pred EEEcCCCCEEEEEEcC-----CcEEEEcCC-CceEEEecCCC-CCeEEEEEecCCCEEEEEEC-----------------
Q 001621 41 LAFDHIQRLLAIATLD-----GRIKVIGGD-GIEGLLISPSQ-LPYKNLEFLQNQGFLISITN----------------- 96 (1043)
Q Consensus 41 lafsp~g~lLAvgt~d-----G~I~v~~~~-~~~~~~~~~~~-~~V~~l~Fs~d~~~Lvs~s~----------------- 96 (1043)
-+||++|++|.+--+| |.|-|||.. +.+.+-+++.. -.--.|.+.||+..|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5699999999986555 999999987 66666655532 12234568899877777642
Q ss_pred -CCcEEEEECCCCceeEEeecC-----CCEEEEEEeCCCCEEEEEeCCCcE----EEEEEeCCCCeEeeeceeecccccc
Q 001621 97 -DNEIQVWSLESRSLACCLKWE-----SNITAFSVISGSHFMYIGDENGLM----SVIKYDADEGKLFQLPYNISADALS 166 (1043)
Q Consensus 97 -d~~I~vWdl~t~~~l~~~~~~-----~~Vtav~~sp~~~~l~vG~~dG~v----~v~~~d~~~~~l~~~~~~i~~~~~~ 166 (1043)
+-.+..-|..+|+++.....+ -.|..++++++|..++..-..|.- -+..+-.....+. .+..+....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~--~~~~p~~~~- 212 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALR--LLPAPEEQW- 212 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcce--eccCChHHH-
Confidence 123556777888887765432 368999999888766543333311 0000000001111 011111000
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCeEEEE
Q 001621 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFV 215 (1043)
Q Consensus 167 ~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~~~~~ 215 (1043)
..-..-|-+|+++++ +..+++++. .|.+.+||..+++.+..
T Consensus 213 ------~~l~~Y~gSIa~~~~--g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 213 ------RRLNGYIGSIAADRD--GRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ------HhhCCceEEEEEeCC--CCEEEEECCCCCEEEEEECCCCCEeec
Confidence 112457899999984 766666554 56899999999988754
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.076 Score=62.05 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=117.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f 576 (1043)
.++.+..||.|.-+|..+|+ .+..++.....+...+...|+. . +..+++++.+|.|..++..++...-...+
T Consensus 162 ~v~v~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~sP~v----~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGA--VKWTVNLDVPSLTLRGESAPAT----A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred EEEEECCCCEEEEEEccCCC--EeeeecCCCCcccccCCCCCEE----E--CCEEEEEcCCCEEEEEEccCChhhheecc
Confidence 45556678999999999988 3333322111001111112221 1 23566778888888888765432111000
Q ss_pred eccCCCceeeecCCCcceeeEEe-cCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEE
Q 001621 577 VLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1043)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~ 655 (1043)
. .+ .+......+ .....|+. .+..|.+++.+|.+.-+|+.+++.+++..+ .. ...+.
T Consensus 234 ~--~~---------~~~~~~~~~~~~~~sP~v------~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~-~~~~~ 291 (394)
T PRK11138 234 S--QP---------TGATEIDRLVDVDTTPVV------VGGVVYALAYNGNLVALDLRSGQIVWKREY----GS-VNDFA 291 (394)
T ss_pred c--cC---------CCccchhcccccCCCcEE------ECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC-ccCcE
Confidence 0 00 000000000 01122221 234677788899999999999999887543 11 11112
Q ss_pred EEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecCC-CC-cCCCceeEE---EEEe---ccE
Q 001621 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP-WH-LKKKVIAIS---MEVI---DSV 727 (1043)
Q Consensus 656 fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~~-~~-~~~~~~a~~---~~v~---~~i 727 (1043)
.. +..+++++.+|.|+.+|..+|+++-..+ .. ....+.++. .++. ..+
T Consensus 292 ~~------------------------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l 347 (394)
T PRK11138 292 VD------------------------GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYL 347 (394)
T ss_pred EE------------------------CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEE
Confidence 21 2348889999999999999998876542 11 111222222 1222 446
Q ss_pred EEEeeCcccCCCcceeeecccC-CcceeEEeeeecceeEEEEEEEeeCcEEEEeCC
Q 001621 728 RLYSRKSVIQGNNKTVQKVKHK-NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 782 (1043)
Q Consensus 728 rl~~~~~~~~g~~k~~~k~~~~-~~~~~~~~~~~~~~~~~Lv~~~~dG~i~i~slp 782 (1043)
++++..+ |+..- +.++. ..+...+++ .+..|+.+..||.|..+.+|
T Consensus 348 ~~ld~~t---G~~~~--~~~~~~~~~~s~P~~----~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 348 HWINRED---GRFVA--QQKVDSSGFLSEPVV----ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred EEEECCC---CCEEE--EEEcCCCcceeCCEE----ECCEEEEEeCCceEEEEeCC
Confidence 6677765 64332 22232 222222222 23468888999999988876
No 321
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0021 Score=78.52 Aligned_cols=93 Identities=23% Similarity=0.440 Sum_probs=68.2
Q ss_pred eEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEE
Q 001621 539 VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1043)
Q Consensus 539 V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~l 618 (1043)
+..++-+-.+..+|+|+..|.|..+|+..+-.. + ..=..-+++|++++|+.||.++
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---------------~---------~~ne~v~~~Vtsvafn~dg~~l 145 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---------------L---------HQNERVQGPVTSVAFNQDGSLL 145 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccch---------------h---------hcCCccCCcceeeEecCCCcee
Confidence 444444455778999999999999998764110 0 0002346899999999999999
Q ss_pred EEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEe
Q 001621 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1043)
Q Consensus 619 A~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~ 658 (1043)
+.|..+|.|.+||+..+.+++.... +..|++.+-|.-
T Consensus 146 ~~G~~~G~V~v~D~~~~k~l~~i~e---~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 146 LAGLGDGHVTVWDMHRAKILKVITE---HGAPVTGVIFVG 182 (1206)
T ss_pred ccccCCCcEEEEEccCCcceeeeee---cCCccceEEEEE
Confidence 9999999999999998777655433 456777777663
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0016 Score=72.38 Aligned_cols=186 Identities=10% Similarity=0.044 Sum_probs=121.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEec-CccEEEEEecCCCcc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-FGLVYIYNLNGSLDA 571 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~-dG~V~i~~~~~~~~~ 571 (1043)
.-.+++++++-||.++.|--+.... +..+. .+..|.+.|.+++.+-++.++.+... |..+++||+..-.-.
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isG--vEfVK------hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISG--VEFVK------HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccc--eeehh------hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence 3456899999999999997654221 11111 12356778999999999999999776 999999999754311
Q ss_pred --cceeeec-------c-------------CCCceeeecCCCcc-eeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEE
Q 001621 572 --KNFLFVL-------E-------------TKSEVHALPEGKIS-LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1043)
Q Consensus 572 --~~~~f~~-------~-------------~~~~~~~~~~~~~~-~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~ 628 (1043)
..+.+.+ . ..+.+..+...... +....-..|..||.++.++|.+..+.+....|.|.
T Consensus 90 nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 90 NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeE
Confidence 1111111 0 11223333332222 22222356999999999999999999999999999
Q ss_pred EEEcCC------ceEEEEeecCC------CCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEE
Q 001621 629 VLDMNL------LSVLFFTDDIS------GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1043)
Q Consensus 629 vwD~~~------~~~l~~~~~~~------~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~ 696 (1043)
-|..+. .++.+...... ......++++|++.+.. +...+.|..|++
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q----------------------istl~~DrkVR~ 227 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ----------------------ISTLNPDRKVRG 227 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccCc----------------------ccccCcccEEEE
Confidence 999874 12222211110 12345677888765532 666779999999
Q ss_pred EcCCCCCeeecC
Q 001621 697 VGGSSENMISSS 708 (1043)
Q Consensus 697 ~d~~~g~~l~~~ 708 (1043)
++..+|++++..
T Consensus 228 F~~KtGklvqei 239 (558)
T KOG0882|consen 228 FVFKTGKLVQEI 239 (558)
T ss_pred EEeccchhhhhh
Confidence 999999987655
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.015 Score=69.17 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=108.7
Q ss_pred ccCCCCcEEEEEeC----CCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEe
Q 001621 490 KCHSVDRVYLAGYH----DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNL 565 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~----DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~ 565 (1043)
.++|...+++.++. .|+|.|+ +.+|+++ ..+ .. ...+++++|.|.--.||.|=.-|.+-+|.-
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPq--r~V-------t~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQ--RDV-------TY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEE-ecCCCCC--ccc-------cc---ceehhhhccChHHHHHhhccccceeEEEec
Confidence 56777777776653 5788888 3344421 111 11 124778999999999999999999999987
Q ss_pred cCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCC-ceEEEEeecC
Q 001621 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL-LSVLFFTDDI 644 (1043)
Q Consensus 566 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~-~~~l~~~~~~ 644 (1043)
+..... .+-..|..+|+.|.||++|..|.++..-|.|.+|.... +++-+..-..
T Consensus 89 ~~~e~h-------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~ 143 (1416)
T KOG3617|consen 89 NTTETH-------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQ 143 (1416)
T ss_pred CCceee-------------------------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhh
Confidence 653211 12357999999999999999999999999999998752 2221111111
Q ss_pred CCCCCCeEEEEEEe--ecCC------------cccc----CCCCCCCCC---CCCCCCceEEEEeccCceEEEEcCCC
Q 001621 645 SGSSSPIISMTWTE--FKNT------------HSLA----KNPNHSERE---VPVNPAEEVIIVLFKDAKISIVGGSS 701 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~--~~~~------------~~~~----~~p~~~~~~---~~~~~~~~~l~~gt~dg~I~~~d~~~ 701 (1043)
......++-.+|.- .+.+ ...+ .|-.....+ ...-+.+...++++.+|+|+.+|-..
T Consensus 144 hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 144 HELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred hHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 11345667777761 1111 0111 122111111 12235566788899999999999443
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.017 Score=68.93 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=96.0
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecC-----CCEEEEEECCCcEEEEE---CCCCceeEEeecC
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN-----QGFLISITNDNEIQVWS---LESRSLACCLKWE 117 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d-----~~~Lvs~s~d~~I~vWd---l~t~~~l~~~~~~ 117 (1043)
.|.++|+++.||+|.|.+..+.+...++.-+.+++.+++.|| .++.++++..| +.+.. +..+..+..-..+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 599999999999999998766555555555679999999998 46789998888 66654 2222333222456
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEE
Q 001621 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~ 197 (1043)
|+|.++.+ .|+++|=+.+.| |+|++...+. .+. .+++.. ..++.. ---..+.|.+. ++|++|.
T Consensus 161 G~I~~i~W--~g~lIAWand~G-v~vyd~~~~~-~l~----~i~~p~-----~~~R~e-~fpphl~W~~~---~~LVIGW 223 (846)
T KOG2066|consen 161 GPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQ-RLT----NIPPPS-----QSVRPE-LFPPHLHWQDE---DRLVIGW 223 (846)
T ss_pred cceEEEEe--cCcEEEEecCCC-cEEEeccccc-eee----ccCCCC-----CCCCcc-cCCCceEecCC---CeEEEec
Confidence 89999888 578899999999 6887765532 222 122211 011111 12246788874 3588887
Q ss_pred CCCeEEEEEcc
Q 001621 198 ENALVILWDVS 208 (1043)
Q Consensus 198 ~dg~I~lWd~~ 208 (1043)
.| +|.|..++
T Consensus 224 ~d-~v~i~~I~ 233 (846)
T KOG2066|consen 224 GD-SVKICSIK 233 (846)
T ss_pred CC-eEEEEEEe
Confidence 76 55777777
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.01 E-value=0.11 Score=60.27 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEc--CC--Cc----------------------eEE------------------Ee
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIG--GD--GI----------------------EGL------------------LI 72 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~--~~--~~----------------------~~~------------------~~ 72 (1043)
.|+++.|.+...-||+|...|.|-||. .. .. +.+ +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999999999999999999963 21 00 000 00
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec---------CCCEEEEEEe---CC-----CCEEEEE
Q 001621 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW---------ESNITAFSVI---SG-----SHFMYIG 135 (1043)
Q Consensus 73 ~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~---------~~~Vtav~~s---p~-----~~~l~vG 135 (1043)
.-.+++|++|+.+ |-++++.+..+|.+.|.|++....++.-.. ...|+++.|. .. .-.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 0124689999997 558999999999999999988887766321 1468888886 12 2479999
Q ss_pred eCCCcEEEEEEeC-CCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCC-------------------CEEEE
Q 001621 136 DENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG-------------------NRVLI 195 (1043)
Q Consensus 136 ~~dG~v~v~~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g-------------------~~ll~ 195 (1043)
+..|.+.++++.. ..+.+. +.. .... ..+.++|..|..--.+.| +.+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~-----v~~---~~~~---~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFS-----VQF---AGAT---TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EE-----EEE---EEEE-----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred eCCCCEEEEEEecCCCCceE-----EEE---eecc---ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999888764 223222 110 0000 123344444432100001 12455
Q ss_pred EECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe----cCCCCEEEEEEcC
Q 001621 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA----SSSGSILAVGYID 271 (1043)
Q Consensus 196 ~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~----sp~g~~l~tg~~D 271 (1043)
...+..++++...+.+....... . .....++++. ...+..|++-..|
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~-------~----------------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD-------D----------------------PFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S-------S-----------------------EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred EEcccceEEEeCCCCcccceeec-------c----------------------ccccceEEEEeecccCCceEEEEEECC
Confidence 55566778888877765443211 0 1122234442 1357789999999
Q ss_pred CcEEEEcCCCCCcc
Q 001621 272 GDILLWNTSTTAST 285 (1043)
Q Consensus 272 G~I~iWd~~tg~~~ 285 (1043)
|.|+++.++.-+.+
T Consensus 282 G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 282 GSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEEETTT--EE
T ss_pred CcEEEEECCCchHh
Confidence 99999999876544
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.038 Score=61.13 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeE
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~ 253 (1043)
.+...|..++|+|..+| ++..++.+..|.|.|+++..++..+.. ...++
T Consensus 191 ~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a------------------------------~~~~w 239 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIA------------------------------YNQIW 239 (463)
T ss_pred ccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheec------------------------------cCCce
Confidence 35567999999998666 478888999999999999887765422 46799
Q ss_pred EEEEecCCC-CEEEEEEcCCcEEEEcCCCCCc
Q 001621 254 ALCWASSSG-SILAVGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 254 sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg~~ 284 (1043)
++||. -|. .+|..|...|.|.++|+...+.
T Consensus 240 SC~wD-lde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 240 SCCWD-LDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eeeec-cCCcceeEEeccCceEEEEEccCCCc
Confidence 99996 554 5677888899999999987653
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.81 E-value=0.034 Score=66.34 Aligned_cols=161 Identities=10% Similarity=0.116 Sum_probs=101.2
Q ss_pred EEEcCCCCEEEEE-EcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEE------------------------
Q 001621 41 LAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT------------------------ 95 (1043)
Q Consensus 41 lafsp~g~lLAvg-t~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s------------------------ 95 (1043)
+-++|+|+.|... -..+.+.+.|....+...+..-...-..++++++++++.+.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3456777765433 233677777877666655443333445566777777666654
Q ss_pred ----------------CCCcEEEEECCC-----CceeEEeecCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEEeCCCCeE
Q 001621 96 ----------------NDNEIQVWSLES-----RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL 153 (1043)
Q Consensus 96 ----------------~d~~I~vWdl~t-----~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~-dG~v~v~~~d~~~~~l 153 (1043)
.+++|.|.|..+ .+.+..+.-+.....+.++|||++++++.. +.+|.|+++......+
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 346799999988 467777777788889999999999987765 7889998876522111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~ 209 (1043)
.. ++.. .....+.+....+| ...+|.++ |+.+.+-+-|..|..||+..
T Consensus 358 ~~---~~~~--~~~vvaevevGlGP-LHTaFDg~--G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DG---KIKP--RDAVVAEPELGLGP-LHTAFDGR--GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hc---cCCc--cceEEEeeccCCCc-ceEEECCC--CCEEEeEeecceeEEEehHH
Confidence 00 0000 00000011112223 45677774 77777888899999999986
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.80 E-value=0.061 Score=49.72 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=71.2
Q ss_pred eEEEEE---cCCC-CEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 001621 38 ASILAF---DHIQ-RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1043)
Q Consensus 38 v~~laf---sp~g-~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~ 113 (1043)
|+++++ +.+| .-|.+||.|..||||+.+ +.+.+......|..|.-... ++++-+-.+|+|-+++- .+.+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence 566665 4444 578999999999999866 55666667788999888877 66888889999999875 334445
Q ss_pred eecCCCEEEEEE-eCCC---CEEEEEeCCCcEE
Q 001621 114 LKWESNITAFSV-ISGS---HFMYIGDENGLMS 142 (1043)
Q Consensus 114 ~~~~~~Vtav~~-sp~~---~~l~vG~~dG~v~ 142 (1043)
++....++++.+ +.++ .-|++|-++|.|.
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555555666654 3333 2588898998663
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.80 E-value=0.0055 Score=71.81 Aligned_cols=202 Identities=12% Similarity=0.187 Sum_probs=128.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCC-ceEEEecCC--CCCeEEEEEecCC---CEEEEEECCCcEEEEEC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPS--QLPYKNLEFLQNQ---GFLISITNDNEIQVWSL 105 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~-~~~~~~~~~--~~~V~~l~Fs~d~---~~Lvs~s~d~~I~vWdl 105 (1043)
.-+.+.+.++..+|-|+=+|.++.-|- .+.|.+. ...-+-+.| .-.|...+|++.. ..+|+.+ ...-.+|++
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 345567888999999998888887653 4445432 111111122 2356777787632 2344444 445568998
Q ss_pred CCC--ceeE-EeecC-CCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 106 ESR--SLAC-CLKWE-SNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 106 ~t~--~~l~-~~~~~-~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
... +.+. .+..| ..|+.+.|.|.. +.+++.+.|..|..|++..... |+.....| .....
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w-----------~s~as 162 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSW-----------RSAAS 162 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-----ceeeeecc-----------cccCc
Confidence 753 2222 22333 579999998874 5678888899999998765322 23222222 23457
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEccCCeE-EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEec
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1043)
.|.|+-. +++ +++.+....|.+||++.+.. ++.+.+ +...|.++.|+.
T Consensus 163 qVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~-----------------------------~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 163 QVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKG-----------------------------HVSSVNSIDFNR 211 (1081)
T ss_pred eeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecc-----------------------------cceeeehHHHhh
Confidence 7889887 465 67777777899999987643 333322 245566777764
Q ss_pred CCCCEEEEEEcCCcEEEEcCCCC
Q 001621 260 SSGSILAVGYIDGDILLWNTSTT 282 (1043)
Q Consensus 260 p~g~~l~tg~~DG~I~iWd~~tg 282 (1043)
-.-..+.+.+.||+|++||....
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhhhcccCCCCceeeeccccc
Confidence 44567889999999999998654
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.64 E-value=1.1 Score=56.61 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=59.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEE
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~ 146 (1043)
...|.++.|..++..++.+..+|.|.+-|.++......=.....|.+++++||.++++..+..+++-+..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 35899999999999999999999999999887754433344678999999999999999998888766554
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0048 Score=43.87 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.7
Q ss_pred EEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001621 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1043)
Q Consensus 597 ~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD 631 (1043)
..+..|...|++++|++++.++++|+.||.|++||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567899999999999999999999999999996
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.0081 Score=70.69 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=104.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee-
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA- 111 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~--~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l- 111 (1043)
+..|.--++|..+++||.|+..|.+++|.....+....-. ....+..+..+++..++++++..+.|.|+-++.+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 4445555678899999999999999999987765543322 2345556667777555666667788888888775321
Q ss_pred --E--Eee--cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 112 --C--CLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 112 --~--~~~--~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
. ... ++..|||+++++++..+|+|++.|.|....++.. .+ +..+.. +. ..-.+.|+.|...
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~--~~----~~~~~q---~i----l~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR--QA----FLSKSQ---EI----LSEDSEIVQLDYL 179 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh--hh----hccccc---ee----eccCcceEEeecc
Confidence 1 111 2358999999999999999999999887777661 11 111110 11 1124678888766
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCe
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQ 211 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~ 211 (1043)
- + +||++.-... .|++++...
T Consensus 180 q---~-~LLVStl~r~-~Lc~tE~et 200 (726)
T KOG3621|consen 180 Q---S-YLLVSTLTRC-ILCQTEAET 200 (726)
T ss_pred c---c-eehHhhhhhh-heeecchhH
Confidence 4 4 4666655544 467766554
No 333
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.19 Score=57.78 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=82.1
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEec-----------Cc
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-----------FG 558 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~-----------dG 558 (1043)
.+||.|.+|+|=|.-| |-+|--.. ...+..+ .| ..|.-+.|||.-++|++=+. ..
T Consensus 217 ~wSP~GTYL~t~Hk~G-I~lWGG~~--f~r~~RF----------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQG-IALWGGES--FDRIQRF----------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred EecCCceEEEEEeccc-eeeecCcc--HHHHHhc----------cC-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 7999999999999877 88994222 1112222 12 35889999999999997432 25
Q ss_pred cEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEE
Q 001621 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1043)
Q Consensus 559 ~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l 638 (1043)
.++|||+.++.....+. .+......-.=..||.|++++|--..|+ |.|++...-.++
T Consensus 283 ~l~IWDI~tG~lkrsF~----------------------~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~ll 339 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFP----------------------VIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLL 339 (698)
T ss_pred eEEEEEccccchhccee----------------------ccCCCccccceEEeccCCceeEEeccce-EEEEecCceeee
Confidence 78999998864322211 0111111112368999999999887765 889988764433
Q ss_pred EEeecCCCCCCCeEEEEEEee
Q 001621 639 FFTDDISGSSSPIISMTWTEF 659 (1043)
Q Consensus 639 ~~~~~~~~~~~~V~sl~fs~~ 659 (1043)
-...+ .-++|..-.|+|.
T Consensus 340 d~Ksl---ki~gIr~FswsP~ 357 (698)
T KOG2314|consen 340 DKKSL---KISGIRDFSWSPT 357 (698)
T ss_pred ccccc---CCccccCcccCCC
Confidence 22112 2356777777653
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.55 E-value=0.14 Score=64.05 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=121.8
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE----CCCCcee
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS----LESRSLA 111 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWd----l~t~~~l 111 (1043)
..|..+.|--++.-+.+++.+|.|.+-|......-....-...|.+++|+||+..|+-++..+++.+-+ .-.-+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 468888888889999999999999998776554443333467899999999999998888888776533 2222222
Q ss_pred ----------EEeec-------------------------------CCCEEEEEEeCCCCEEEEE-----eCCCcEEEEE
Q 001621 112 ----------CCLKW-------------------------------ESNITAFSVISGSHFMYIG-----DENGLMSVIK 145 (1043)
Q Consensus 112 ----------~~~~~-------------------------------~~~Vtav~~sp~~~~l~vG-----~~dG~v~v~~ 145 (1043)
.+..| +..=+.+++--||+|+++. .....|+||+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 11111 1112347788889998872 3225677876
Q ss_pred EeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC---CCeEEEEEccCCeEEEEeCCcccc
Q 001621 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVGGGKDLQ 222 (1043)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~---dg~I~lWd~~~~~~~~~~~~~~~~ 222 (1043)
-+ +.+..+ .. ....--.+++|-|. |..+++-.. ++.|++|.-+ |-....+ .
T Consensus 229 rE---g~Lns~--se-------------~~~~l~~~LsWkPs--gs~iA~iq~~~sd~~IvffErN-GL~hg~f-----~ 282 (1265)
T KOG1920|consen 229 RE---GALNST--SE-------------PVEGLQHSLSWKPS--GSLIAAIQCKTSDSDIVFFERN-GLRHGEF-----V 282 (1265)
T ss_pred cc---chhhcc--cC-------------cccccccceeecCC--CCeEeeeeecCCCCcEEEEecC-Ccccccc-----c
Confidence 43 222210 00 11223467899994 875665443 4456666632 2211111 1
Q ss_pred cccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEE---EEcCCcEEEEcCCCC
Q 001621 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV---GYIDGDILLWNTSTT 282 (1043)
Q Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~t---g~~DG~I~iWd~~tg 282 (1043)
+. .| ....+|..++|+ .++..|++ ......|++|-+.+-
T Consensus 283 l~---------~p-----------~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 283 LP---------FP-----------LDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cC---------Cc-----------ccccchheeeec-CCCCceeeeecccccceEEEEEecCe
Confidence 10 00 013448999998 89999887 444444999987653
No 335
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.51 E-value=0.0061 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=34.8
Q ss_pred ceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC
Q 001621 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD 65 (1043)
Q Consensus 26 ~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~ 65 (1043)
++.+.....+..|++++|+|...+||+|+.||.|.||..+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4455666778889999999999999999999999999873
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.51 E-value=0.1 Score=61.05 Aligned_cols=192 Identities=13% Similarity=0.152 Sum_probs=108.9
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEE--E
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAF--S 124 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav--~ 124 (1043)
+..+.+++.+|.++-+|..+++.++.......+.+--...+ +.++..+.++.|.-+|.++|+.+..+....+...+ .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 34566778889999999887777665543333322111223 56777888999999999999998777543211000 0
Q ss_pred EeC--CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC-CCCCEEEEEECCCe
Q 001621 125 VIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYENAL 201 (1043)
Q Consensus 125 ~sp--~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~-d~g~~ll~~~~dg~ 201 (1043)
.+| .+..+++++.+|.+. .++...++.. |..+.. ...+. ........+.-+|- .++ .+.++..+|.
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~--a~d~~~G~~~---W~~~~~---~~~~~--~~~~~~~~~~~sP~v~~~-~vy~~~~~g~ 267 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVS--AVLMEQGQLI---WQQRIS---QPTGA--TEIDRLVDVDTTPVVVGG-VVYALAYNGN 267 (394)
T ss_pred CCCEEECCEEEEEcCCCEEE--EEEccCChhh---heeccc---cCCCc--cchhcccccCCCcEEECC-EEEEEEcCCe
Confidence 011 234678888888664 4555445443 221100 00000 00000001111121 024 4777888999
Q ss_pred EEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 202 I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
+.-+|..+++.+-.... .....+. ..+..|+.+..||.|..+|..+
T Consensus 268 l~ald~~tG~~~W~~~~-------------------------------~~~~~~~---~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 268 LVALDLRSGQIVWKREY-------------------------------GSVNDFA---VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred EEEEECCCCCEEEeecC-------------------------------CCccCcE---EECCEEEEEcCCCeEEEEECCC
Confidence 99999999987654321 0011122 2356777888899999999988
Q ss_pred CCc
Q 001621 282 TAS 284 (1043)
Q Consensus 282 g~~ 284 (1043)
|+.
T Consensus 314 G~~ 316 (394)
T PRK11138 314 GVE 316 (394)
T ss_pred CcE
Confidence 753
No 337
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.50 E-value=0.069 Score=49.38 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=69.8
Q ss_pred eEEEEEec---C-CCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCC
Q 001621 539 VSTLSFCF---I-NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 614 (1043)
Q Consensus 539 V~~l~fsp---d-~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~d 614 (1043)
|++|+++. | ...|++|+.|..||||+=..- + .. ..-+..|++|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------~------------~E-i~e~~~v~~L~~~~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------V------------AE-ITETDKVTSLCSLGG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------E------------EE-EecccceEEEEEcCC
Confidence 67777765 2 258999999999999984321 0 11 123567899988877
Q ss_pred CcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceE
Q 001621 615 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1043)
Q Consensus 615 g~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I 694 (1043)
+ .+|-|..+|||-++|.... +++.. ....++++.+..... +.+.+ |++|=++|.|
T Consensus 54 ~-~F~Y~l~NGTVGvY~~~~R--lWRiK----SK~~~~~~~~~D~~g----------------dG~~e--LI~GwsnGkv 108 (111)
T PF14783_consen 54 G-RFAYALANGTVGVYDRSQR--LWRIK----SKNQVTSMAFYDING----------------DGVPE--LIVGWSNGKV 108 (111)
T ss_pred C-EEEEEecCCEEEEEeCcce--eeeec----cCCCeEEEEEEcCCC----------------CCceE--EEEEecCCeE
Confidence 6 5899999999999997543 33322 235577877752211 12223 8999999887
Q ss_pred E
Q 001621 695 S 695 (1043)
Q Consensus 695 ~ 695 (1043)
-
T Consensus 109 e 109 (111)
T PF14783_consen 109 E 109 (111)
T ss_pred E
Confidence 4
No 338
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.0024 Score=63.54 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001621 971 PRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1042 (1043)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1042 (1043)
|...++..+|+. -+..-+++-++=+|+.+||||||-|=++||-|++++.+|-.-++.|.++ .|||
T Consensus 122 p~id~lskvkaq---v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~----mw~~ 186 (217)
T KOG0859|consen 122 PEISKLAKVKAQ---VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRK----MWFQ 186 (217)
T ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHH----HHHh
Confidence 445666666666 3344488899999999999999999999999999999999988877765 5887
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.015 Score=67.82 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeE-EEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~-~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l 111 (1043)
.+..+.-+-|+|.-.++|.++.+|.|-+.... .+.++.++ +..+++ +++|-|||..|+.+=.||+|++-|++++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 46678889999999999999999999887766 67777776 555565 9999999998888889999999999999988
Q ss_pred EE--eecCCCEEEEEEe
Q 001621 112 CC--LKWESNITAFSVI 126 (1043)
Q Consensus 112 ~~--~~~~~~Vtav~~s 126 (1043)
.. +..+..|+++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 87 4456778888776
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.32 E-value=1.3 Score=48.84 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=88.4
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
..++.|+.|..|| +.+++.+... .+... .+..+|+.|..-|+-+.|++=+ ||.|++|++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i-----------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRI-----------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeE-----------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 3466788889888 8999983222 01111 1113599999999876665543 4999999997643221
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEE---EcCCCcEEEEEeCCCeEEEEEcCCc-----eEEEEeecC
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---FTSSGAKLAVGFECGRVAVLDMNLL-----SVLFFTDDI 644 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la---~s~dg~~lA~Gs~dg~V~vwD~~~~-----~~l~~~~~~ 644 (1043)
... ....+.... . ..-......|...+ -...+.+|+++-.. +|.+|....+ ..+....
T Consensus 71 ~~~-~~~~~~~~~--------~--~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~-- 136 (275)
T PF00780_consen 71 TSA-PLAFPKSRS--------L--PTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS-- 136 (275)
T ss_pred ccc-ccccccccc--------c--cccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE--
Confidence 000 000000000 0 00011222344444 22234456655554 8899988664 2333332
Q ss_pred CCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCCCeeecC
Q 001621 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1043)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g~~l~~~ 708 (1043)
.+..+.+++|.. ..+++|+.++ ..++|..++......
T Consensus 137 --lp~~~~~i~~~~------------------------~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 --LPDPPSSIAFLG------------------------NKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred --cCCCcEEEEEeC------------------------CEEEEEeCCc-eEEEecCCCCceEEe
Confidence 367899999962 3367776544 788898887765544
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.29 E-value=0.17 Score=55.90 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred cCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----------
Q 001621 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC----------- 112 (1043)
Q Consensus 44 sp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~----------- 112 (1043)
...++.|++|+.+| |++++..+...........+|..|...++-+.|++.+ |+.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 44678999999999 8998873222222222334599999999877777775 5999999997754433
Q ss_pred ----EeecCCCEEEEE---EeCCCCEEEEEeCCCcEEEEEEeCCCCeE-ee-eceeecccccccccCCCCCCCCCeEEEE
Q 001621 113 ----CLKWESNITAFS---VISGSHFMYIGDENGLMSVIKYDADEGKL-FQ-LPYNISADALSEKAGFPLLSHQPVVGVL 183 (1043)
Q Consensus 113 ----~~~~~~~Vtav~---~sp~~~~l~vG~~dG~v~v~~~d~~~~~l-~~-~~~~i~~~~~~~~~~~~~~~~~~V~sl~ 183 (1043)
.+..-..+..++ -.....+|+++... .|.++.+......+ .. ..+.+ ...+.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~l---------------p~~~~~i~ 145 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISL---------------PDPPSSIA 145 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEc---------------CCCcEEEE
Confidence 112224566666 22234456665554 78888887643222 10 01222 25688899
Q ss_pred ecCCCCCCEEEEEECCCeEEEEEccCCeEEEE
Q 001621 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1043)
Q Consensus 184 ~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~ 215 (1043)
|.+ +.+++|+.++- .+.|+.++.....
T Consensus 146 ~~~----~~i~v~~~~~f-~~idl~~~~~~~l 172 (275)
T PF00780_consen 146 FLG----NKICVGTSKGF-YLIDLNTGSPSEL 172 (275)
T ss_pred EeC----CEEEEEeCCce-EEEecCCCCceEE
Confidence 985 25888887765 7889987765433
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.28 E-value=4.8 Score=50.12 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=70.9
Q ss_pred CCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCc
Q 001621 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 616 (1043)
Q Consensus 537 ~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~ 616 (1043)
++|.++.- -+|++||. -.-.|++|++..++.. ..-+.|..++.+|...-.|.
T Consensus 830 Gav~aL~~-fngkllA~--In~~vrLye~t~~~eL-------------------------r~e~~~~~~~~aL~l~v~gd 881 (1096)
T KOG1897|consen 830 GAVYALVE-FNGKLLAG--INQSVRLYEWTTEREL-------------------------RIECNISNPIIALDLQVKGD 881 (1096)
T ss_pred cceeehhh-hCCeEEEe--cCcEEEEEEcccccee-------------------------hhhhcccCCeEEEEEEecCc
Confidence 35554432 14555543 3457999999875322 11256888999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEE
Q 001621 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1043)
Q Consensus 617 ~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~ 696 (1043)
.+|+|.-=+++.+.-.+...-.+......-.+...+++++-. +...+.+.++|.+++
T Consensus 882 eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~-----------------------~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 882 EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD-----------------------DDTYLGAENSGNLFT 938 (1096)
T ss_pred EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec-----------------------CceEEeecccccEEE
Confidence 999999999988877654331111111112456677777631 223566777788877
Q ss_pred EcCC
Q 001621 697 VGGS 700 (1043)
Q Consensus 697 ~d~~ 700 (1043)
....
T Consensus 939 v~~d 942 (1096)
T KOG1897|consen 939 VRKD 942 (1096)
T ss_pred EEec
Confidence 6543
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=1.8 Score=45.80 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccc
Q 001621 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1043)
Q Consensus 493 ~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~ 572 (1043)
....+++.|+..+.+.--|+.+|.+.=...+.. .|.+-+.- -|..++.|...|.+++.+++++...-
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW 87 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehhhCc------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee
Confidence 335678888889999999999998432222211 22222221 35679999999999999998863211
Q ss_pred ceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeec
Q 001621 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 573 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
+ | +.+.. -.+ .-.+.+++.++-.|+.|++....|.++..++|+..+
T Consensus 88 ~--f--------------------~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 88 N--F--------------------VILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred e--e--------------------eehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 1 0 11111 111 223577899999999999999999999999988655
No 344
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.0096 Score=71.12 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=117.8
Q ss_pred cCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEc
Q 001621 533 AGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1043)
Q Consensus 533 ~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s 612 (1043)
..|+..-+|++|+-+.+.|++|+..|.|++|++.++..++. ...|+++||-|.=|
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------------------------~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------------------------VNCHQSAVTLVEPS 1152 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------------------------cccccccccccccc
Confidence 46778899999999999999999999999999988764432 37899999999999
Q ss_pred CCCcEEEEEeCCC--eEEEEEcCC-ceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEec
Q 001621 613 SSGAKLAVGFECG--RVAVLDMNL-LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1043)
Q Consensus 613 ~dg~~lA~Gs~dg--~V~vwD~~~-~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt 689 (1043)
.||..+.+.+.-. ...+||+.+ +...|+. ..-.++.|+... ..-++||
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-------~ed~~vkFsn~~----------------------q~r~~gt 1203 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-------DEDKAVKFSNSL----------------------QFRALGT 1203 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccccCccccc-------cccceeehhhhH----------------------HHHHhcc
Confidence 9998766555433 478999865 1112211 122356676322 1146788
Q ss_pred cCceEEEEcCCCCCeeecC-C----CCcCCCceeEE---EEEeccEEEEeeCcccCCCcceeeecccCCcceeEEeeeec
Q 001621 690 KDAKISIVGGSSENMISSS-P----WHLKKKVIAIS---MEVIDSVRLYSRKSVIQGNNKTVQKVKHKNRCCWASTIEKD 761 (1043)
Q Consensus 690 ~dg~I~~~d~~~g~~l~~~-~----~~~~~~~~a~~---~~v~~~irl~~~~~~~~g~~k~~~k~~~~~~~~~~~~~~~~ 761 (1043)
......+||.+|+..+.+. + .+-.++-..++ -.|+++..||++... .+...+++ .....-..| .
T Consensus 1204 ~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~~--~aIh~FD~----ft~~~~G~F--H 1275 (1516)
T KOG1832|consen 1204 EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRIP--EAIHRFDQ----FTDYGGGGF--H 1275 (1516)
T ss_pred cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeeccH--HHHhhhhh----heecccccc--c
Confidence 8888999999999877663 1 11111111111 334477789998541 11111222 111111222 3
Q ss_pred ceeEEEEEEEeeCcEEEEeCCChhhhh
Q 001621 762 EKVCGLLLLFQTGAVQIRSLPDLELVM 788 (1043)
Q Consensus 762 ~~~~~Lv~~~~dG~i~i~slp~l~~~~ 788 (1043)
|+|.-+|-- -+||++-+.+++.
T Consensus 1276 P~g~eVIIN-----SEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1276 PSGNEVIIN-----SEIWDMRTFKLLH 1297 (1516)
T ss_pred CCCceEEee-----chhhhhHHHHHHh
Confidence 555544432 2688887777664
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.71 E-value=1.1 Score=50.58 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=104.4
Q ss_pred cEEEEcCCCceEEE--ecCCCCCeEEE---EEecC----CCEEEEEEC---------C-CcEEEEECCCC-------cee
Q 001621 58 RIKVIGGDGIEGLL--ISPSQLPYKNL---EFLQN----QGFLISITN---------D-NEIQVWSLESR-------SLA 111 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~--~~~~~~~V~~l---~Fs~d----~~~Lvs~s~---------d-~~I~vWdl~t~-------~~l 111 (1043)
.|+++|..+.+.+. .++....+.++ .|..+ ..+++.++. . |.|.++++... +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888876665543 33344444444 44432 466666653 2 88999999984 234
Q ss_pred EEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCC
Q 001621 112 CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 112 ~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~ 191 (1043)
+....++.|++++.- +.+++++. ++.|.+++++... ++....+ . .....|+++... ++
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~-~l~~~~~-~-------------~~~~~i~sl~~~----~~ 140 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK-TLLKKAF-Y-------------DSPFYITSLSVF----KN 140 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS-SEEEEEE-E--------------BSSSEEEEEEE----TT
T ss_pred EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc-cchhhhe-e-------------cceEEEEEEecc----cc
Confidence 555667999999876 34455554 4678899988764 2321000 0 012356777665 34
Q ss_pred EEEEEECCCeEEEEEccC-CeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEc
Q 001621 192 RVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~ 270 (1043)
++++|.-...+.++.++. +..+..+.. . .....++++++. +++..++++..
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~~va~-------d--------------------~~~~~v~~~~~l-~d~~~~i~~D~ 192 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLILVAR-------D--------------------YQPRWVTAAEFL-VDEDTIIVGDK 192 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EEEEEE-------E--------------------SS-BEEEEEEEE--SSSEEEEEET
T ss_pred EEEEEEcccCEEEEEEEccCCEEEEEEe-------c--------------------CCCccEEEEEEe-cCCcEEEEEcC
Confidence 788888777667775554 332222211 0 014568899887 67789999999
Q ss_pred CCcEEEEcCC
Q 001621 271 DGDILLWNTS 280 (1043)
Q Consensus 271 DG~I~iWd~~ 280 (1043)
+|.|.++..+
T Consensus 193 ~gnl~~l~~~ 202 (321)
T PF03178_consen 193 DGNLFVLRYN 202 (321)
T ss_dssp TSEEEEEEE-
T ss_pred CCeEEEEEEC
Confidence 9999999875
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.33 Score=58.85 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=85.4
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCC-ce-eeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCC
Q 001621 496 RVYLAGYHDG-----SVRIWDATYPV-FK-LICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1043)
Q Consensus 496 ~~l~tg~~Dg-----tVriWD~~~~~-l~-~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~ 568 (1043)
++|++-+.|+ .|+|||++..+ -. |.+.....+....+.....|+.+|+.+.+-+.+|+|-.+|.|..|.=.--
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 4677766665 48999987542 11 22222111221122233578999999999999999999999999864322
Q ss_pred CcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCC
Q 001621 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1043)
Q Consensus 569 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~ 648 (1043)
+..+. .. .....-..|||.|++-.+++.+.-......|.++.+.+....... .+.++
T Consensus 158 RDrgs--------------------r~-~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~--ld~~G 214 (933)
T KOG2114|consen 158 RDRGS--------------------RQ-DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV--LDNNG 214 (933)
T ss_pred hcccc--------------------ce-eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceee--eccCC
Confidence 11111 00 112345679999999999987444444556888888754422221 12356
Q ss_pred CCeEEEEEE
Q 001621 649 SPIISMTWT 657 (1043)
Q Consensus 649 ~~V~sl~fs 657 (1043)
.++.+..|+
T Consensus 215 ~~lnCss~~ 223 (933)
T KOG2114|consen 215 ISLNCSSFS 223 (933)
T ss_pred ccceeeecC
Confidence 677777776
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.65 E-value=0.097 Score=63.49 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecC-CCCCeEEEEEecCCCEEEEEEC---------CCcEEEEECCC
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN---------DNEIQVWSLES 107 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~-~~~~V~~l~Fs~d~~~Lvs~s~---------d~~I~vWdl~t 107 (1043)
|+.+.+ ++++|.+|...|+|.+-|..+.+.+..+. |.+.|..+.. .|..|++++- |..|+||||+.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence 666665 67899999999999999998888776664 4567766544 4566888874 55689999998
Q ss_pred CceeEEeecCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 108 RSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 108 ~~~l~~~~~~~~Vtav~~sp~~-~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
-+.+.-+..+..-.-+.|.|.. ..+++.++.|..++.+...-...... -+.+ ....+.+.++.+++
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~-~~~v------------~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG-VKMV------------NPNGSGISAFDISS 322 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccc-eeEE------------ccCCCcceeEEecC
Confidence 8888777766544666777774 46888899998776551110000000 0111 11234488899999
Q ss_pred CCCCCEEEEEECCCeEEEEE
Q 001621 187 NSSGNRVLIAYENALVILWD 206 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd 206 (1043)
. |+.|+.|-.+|.|.+|-
T Consensus 323 n--~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 N--GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred C--CceEEEecccCcEeeec
Confidence 5 77799999999999998
No 348
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.64 E-value=0.34 Score=59.06 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=107.6
Q ss_pred EEEEEEcCCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC-CCEEEEEEe
Q 001621 49 LLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVI 126 (1043)
Q Consensus 49 lLAvgt~dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~-~~Vtav~~s 126 (1043)
.+..|..-..+-.+|..+........- ...|+-++ .++++|.+++..|+|.+-|..+-+.++++..| +.|.++.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD-- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD-- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--
Confidence 333343333444455444333322221 12344443 45588999999999999999999999999866 6666554
Q ss_pred CCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCC-CCCCeEEEEecCCCCCCEEEEEECCCeEEEE
Q 001621 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL-SHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1043)
Q Consensus 127 p~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~-~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lW 205 (1043)
-.|+.|++.+-.+.-.-...|. +.. -|-+... +++ .|.. +.+| .-+.|+|. ...++++++..|...+-
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~----Fvk-VYDLRmm---ral-~PI~~~~~P-~flrf~Ps-l~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDP----FVK-VYDLRMM---RAL-SPIQFPYGP-QFLRFHPS-LTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccCCeEEEeecccccccccccc----hhh-hhhhhhh---hcc-CCcccccCc-hhhhhccc-ccceEEEEecccceeec
Confidence 4688887766554221111111 000 0100000 000 0101 1122 55778886 56789999999998887
Q ss_pred E---ccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEc
Q 001621 206 D---VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1043)
Q Consensus 206 d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd 278 (1043)
| +.....-.... . | -...+.+.+++ ++|..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v--------~--------p------------~~s~i~~fDiS-sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMV--------N--------P------------NGSGISAFDIS-SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEE--------c--------c------------CCCcceeEEec-CCCceEEEecccCcEeeec
Confidence 7 32221110000 0 0 03448899996 9999999999999999998
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.54 E-value=0.23 Score=58.16 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred EEEcCCCCEEEEEEc---C-CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceeEE
Q 001621 41 LAFDHIQRLLAIATL---D-GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN--EIQVWSLESRSLACC 113 (1043)
Q Consensus 41 lafsp~g~lLAvgt~---d-G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~-d~--~I~vWdl~t~~~l~~ 113 (1043)
-+|+|+++.++--+- . .+|++++......-........-..-+|+||+.+|+-+.. |+ .|.+.|+.+++...-
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 456777765554321 2 3467777654433222222333445679999987776653 44 477888888874442
Q ss_pred eecCCCEEEEEEeCCCCEEEE-EeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCE
Q 001621 114 LKWESNITAFSVISGSHFMYI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1043)
Q Consensus 114 ~~~~~~Vtav~~sp~~~~l~v-G~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ 192 (1043)
-...+.-+.=.++|+|++++- .+..|.-+||.++.+...... +... . ..-..-.|+| +|++
T Consensus 278 t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~----------~--~~~~~p~~Sp--dG~~ 339 (425)
T COG0823 278 TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFS----------G--GGNSNPVWSP--DGDK 339 (425)
T ss_pred ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eecc----------C--CCCcCccCCC--CCCE
Confidence 233344445678999998764 455677888888877654432 1110 0 0111556888 4887
Q ss_pred EEEEEC-CCe--EEEEEccCCe
Q 001621 193 VLIAYE-NAL--VILWDVSEAQ 211 (1043)
Q Consensus 193 ll~~~~-dg~--I~lWd~~~~~ 211 (1043)
++.... +|. |.+.|+.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeccCCceeeEEeccCCCC
Confidence 776653 343 5666665554
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.54 E-value=0.87 Score=54.78 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=94.0
Q ss_pred ecCCCEEEEEE-CCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEe---CCCc-EEEEEEeCCCCeEeeecee
Q 001621 85 LQNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD---ENGL-MSVIKYDADEGKLFQLPYN 159 (1043)
Q Consensus 85 s~d~~~Lvs~s-~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~---~dG~-v~v~~~d~~~~~l~~~~~~ 159 (1043)
.+|+..|...+ ..+.+.++|.++.+....+.-.+.-..++++|++.++++.+ +.|. +...+.... .... .|.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-d~~v--vfn 277 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-DWVV--VFN 277 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC-ceEE--EEc
Confidence 44554443332 24678889999888888887777777889999999999986 3332 222211110 0000 011
Q ss_pred ecc--------------cc----ccccc----C--C--CCCCCCCeEEEEecCCCCCCEEEEEEC-CCeEEEEEccCCeE
Q 001621 160 ISA--------------DA----LSEKA----G--F--PLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQI 212 (1043)
Q Consensus 160 i~~--------------~~----~~~~~----~--~--~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~~~~ 212 (1043)
+.. .. +.... + . ...-......|.++| ||++++++.. +.+|.|.|+.+.+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhh
Confidence 100 00 00000 0 0 000123457788999 4887766554 78999999987653
Q ss_pred EEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 213 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
... .+ +..+..+. +..+- | ..+ ....|. ++|....|-..|..|..||+.+
T Consensus 356 ~~~--~~-~~~~~~vv---aevev--G---------lGP-LHTaFD-g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFD--GK-IKPRDAVV---AEPEL--G---------LGP-LHTAFD-GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhh--cc-CCccceEE---Eeecc--C---------CCc-ceEEEC-CCCCEEEeEeecceeEEEehHH
Confidence 210 00 00000000 00000 0 222 234575 8999888999999999999965
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.52 E-value=1.8 Score=48.34 Aligned_cols=209 Identities=12% Similarity=0.112 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCEEEEEEcC--CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 001621 38 ASILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL 114 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~d--G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~-t~~~l~~~ 114 (1043)
...++++.+++++.+-.-. -.|.|.|....+.+.+.+- ..+..+-=+++ ..+.+.+.||.+.-..+. .|+...+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEee
Confidence 3446789999998886543 6788899887777655432 22333333334 447788999999999998 56654322
Q ss_pred e--cC---CC-EEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC
Q 001621 115 K--WE---SN-ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1043)
Q Consensus 115 ~--~~---~~-Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d 188 (1043)
. ++ .+ +..=+++..+..++--+-+|.|+-.++..+..++.. ++.+..+. .+.-+. ..+...-+++|+.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~-e~~~~W---rPGG~Q~~A~~~~- 248 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDA-EKADGW---RPGGWQLIAYHAA- 248 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HH-HHHTTE---EE-SSS-EEEETT-
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCcc-ccccCc---CCcceeeeeeccc-
Confidence 1 11 11 222233445555555677888877666665444432 34432110 010000 0122344666664
Q ss_pred CCCEEEEEEC---CC-------eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 189 SGNRVLIAYE---NA-------LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 189 ~g~~ll~~~~---dg-------~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
.++|.+--. +| .|-++|+.+++.+.++.- ..++.++..+
T Consensus 249 -~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------------------------~~~~~Si~Vs 297 (342)
T PF06433_consen 249 -SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------------------------EHPIDSIAVS 297 (342)
T ss_dssp -TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------------------------EEEESEEEEE
T ss_pred -cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------------------------CCccceEEEc
Confidence 334444221 11 578889999998877632 2346677775
Q ss_pred cCCCC-EEEEEE-cCCcEEEEcCCCCCccc
Q 001621 259 SSSGS-ILAVGY-IDGDILLWNTSTTASTK 286 (1043)
Q Consensus 259 sp~g~-~l~tg~-~DG~I~iWd~~tg~~~~ 286 (1043)
.+.. .|++.. .++.|.+||..+|+.+.
T Consensus 298 -qd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 298 -QDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -SSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred -cCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 5554 565554 47999999999987554
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=3.5 Score=47.90 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=128.9
Q ss_pred CCeEEEEEcCCCCEEEE-EEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCcee
Q 001621 36 ATASILAFDHIQRLLAI-ATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLA 111 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAv-gt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~---d~~I~vWdl~t~~~l 111 (1043)
.....+++++.+..+.+ ...+..|.+.|...............-..++|.++++++..+.. ++++.+.|-.+++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 44567889999885444 44558999999655444433332335567899999988888876 689999999999988
Q ss_pred EEeecC-CCEEEEEEeCCCCEEEEEe-CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC
Q 001621 112 CCLKWE-SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1043)
Q Consensus 112 ~~~~~~-~~Vtav~~sp~~~~l~vG~-~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~ 189 (1043)
.+..-. .+ ..++++|++..+++.. .++.|.+++... ..+. + +.. .........-..+.+.|+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~~v~----~-~~~------~~~~~~~~~P~~i~v~~~-- 217 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG--NSVV----R-GSV------GSLVGVGTGPAGIAVDPD-- 217 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC--ccee----c-ccc------ccccccCCCCceEEECCC--
Confidence 886533 34 8999999999988887 566676665332 2221 0 000 000011223356778884
Q ss_pred CCEEEEEECC---CeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 190 GNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 190 g~~ll~~~~d---g~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
|.++.+.-.. +.+...|..++........ .+ .. ....+... |+|..+.
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------------~~--------------~~-~~~~v~~~-p~g~~~y 268 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLP-------------VG--------------SG-APRGVAVD-PAGKAAY 268 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceEEEeccc-------------cc--------------cC-CCCceeEC-CCCCEEE
Confidence 7655544333 5888888888776543110 00 01 23345564 9999988
Q ss_pred EEEcC-CcEEEEcCCCCC
Q 001621 267 VGYID-GDILLWNTSTTA 283 (1043)
Q Consensus 267 tg~~D-G~I~iWd~~tg~ 283 (1043)
+.... +.+.+-|..+..
T Consensus 269 v~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 269 VANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEecCCCeEEEEeCCCCc
Confidence 88665 677777766544
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.063 Score=66.23 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCC-ceEEEec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~-~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
.+...|+ .+.++|+||..|.|-.+|..+ ......- ....+|++++|+.||..|..|-.+|.|.+||+.++++++.+
T Consensus 91 ~v~s~a~--~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 91 GVISSAI--VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred ceeeeee--eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3444443 456899999999999888654 2222222 23679999999999999999999999999999999999888
Q ss_pred ecC-CCEE---EEEEeCCCCEEEEEeCCCcEEEEEEeC
Q 001621 115 KWE-SNIT---AFSVISGSHFMYIGDENGLMSVIKYDA 148 (1043)
Q Consensus 115 ~~~-~~Vt---av~~sp~~~~l~vG~~dG~v~v~~~d~ 148 (1043)
..+ .+++ .+....++..+++++..|. +|.+.-
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 643 2333 3333445557888888885 577654
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.48 E-value=0.46 Score=55.94 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=40.2
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCC
Q 001621 90 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1043)
Q Consensus 90 ~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~ 149 (1043)
.|+....++.|.+||+++++.+..+.... |..+.+++++++++..+.+. +.+++++.+
T Consensus 118 ~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~-i~il~~~~~ 175 (443)
T PF04053_consen 118 NLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS-IYILKYNLE 175 (443)
T ss_dssp SSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S-EEEEEE-HH
T ss_pred cEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe-EEEEEecch
Confidence 35555566689999999999999998664 89999999999999998775 778877653
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.39 E-value=5.2 Score=46.92 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred EEEcCCCCEEEEEEcC----------C-cEEEEcCCCceEE-EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 41 LAFDHIQRLLAIATLD----------G-RIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 41 lafsp~g~lLAvgt~d----------G-~I~v~~~~~~~~~-~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
+|..|.|..+|+...+ . .|+||+..+.... ..... ..|..+.|..+ ..|+.+..||.++++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 5666777777766544 2 5999987765432 23333 78999999987 6799999999999999863
No 356
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.38 E-value=0.98 Score=47.04 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=39.6
Q ss_pred CCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEE
Q 001621 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1043)
Q Consensus 189 ~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg 268 (1043)
+|++.++.+..|+|.-.|..+|+.+..+. +| ...|+|+||-.++-..+.+.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eik---------lP--------------------t~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIK---------LP--------------------TPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEE---------cC--------------------CCceEEEEecCCCccEEEEE
Confidence 58877888899999999999999987763 23 67899999975655555543
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.19 E-value=0.03 Score=39.50 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCCCCeEEEEEecCCCeEEEEecCccEEEEE
Q 001621 534 GSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1043)
Q Consensus 534 ~~~~~V~~l~fspd~~~La~g~~dG~V~i~~ 564 (1043)
.|...|.++.|.+++..+++++.||.|++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5667899999999999999999999999995
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.19 E-value=0.47 Score=58.99 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred ECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCC-------CEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVISGS-------HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 95 s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~-------~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
...+.|.--||++|+.+..+..+..+.-..+.|+. .-.++|.++..+..|+......++..... +
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~--------k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS--------K 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc--------c
Confidence 35688999999999999999887655455555543 34588888887755554433222221000 0
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (1043)
. + .......|++-.. +|. |++|+.+|.|+|||- .++-.++ .+| +
T Consensus 573 ~--Y--~~~~~Fs~~aTt~--~G~-iavgs~~G~IRLyd~-~g~~AKT----------~lp--------~---------- 616 (794)
T PF08553_consen 573 Q--Y--SSKNNFSCFATTE--DGY-IAVGSNKGDIRLYDR-LGKRAKT----------ALP--------G---------- 616 (794)
T ss_pred c--c--ccCCCceEEEecC--Cce-EEEEeCCCcEEeecc-cchhhhh----------cCC--------C----------
Confidence 0 0 1123456666555 585 999999999999993 2221110 111 0
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 248 EEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 248 ~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
-..+|..++-+ .||++|+..+ +..|.+.++
T Consensus 617 lG~pI~~iDvt-~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 617 LGDPIIGIDVT-ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCCeeEEEec-CCCcEEEEee-cceEEEEEE
Confidence 14679999986 9999887655 567778775
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.00 E-value=0.055 Score=42.07 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001621 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1043)
Q Consensus 601 ~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~ 633 (1043)
....+|++++|||...+||+|+.+|.|.++.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 345679999999999999999999999999983
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.00 E-value=0.85 Score=55.80 Aligned_cols=153 Identities=9% Similarity=0.098 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCEEEEEE------cCC--cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECC-----------
Q 001621 37 TASILAFDHIQRLLAIAT------LDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND----------- 97 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt------~dG--~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d----------- 97 (1043)
.+...+++|+|+.+|.-. .|+ .|.+++..+....+.. . .....-.|+||++.|.++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-G-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-C-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 577889999999877665 244 4555454332222222 2 237777899998877777533
Q ss_pred -CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEE-eCCCCeEee-eceeecccccccccCCCCC
Q 001621 98 -NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY-DADEGKLFQ-LPYNISADALSEKAGFPLL 174 (1043)
Q Consensus 98 -~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~-d~~~~~l~~-~~~~i~~~~~~~~~~~~~~ 174 (1043)
+.+.+.++..+.... ..++.|+.+.++|||..++.-. +|.|.|-.+ ..+.+.... .|..+. ..
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-----------~~ 494 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-----------PG 494 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee-----------cc
Confidence 223333444443322 3356799999999999988765 466655222 222332110 011111 01
Q ss_pred CCCCeEEEEecCCCCCCEEEEEECCCeEEEEEcc
Q 001621 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1043)
Q Consensus 175 ~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~ 208 (1043)
-...+.++.|.++ +. |+++..++...+|.+.
T Consensus 495 l~~~~~~l~W~~~--~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 495 LGDTAVSLDWRTG--DS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred cCCccccceEecC--CE-EEEEecCCCCceEEEe
Confidence 1233688999984 65 7777766554555543
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.71 E-value=0.0097 Score=69.15 Aligned_cols=199 Identities=14% Similarity=0.209 Sum_probs=117.5
Q ss_pred CeEEEEE--cCCCCEEEEEEcCCcEEEEcCCCce---EEEecCCCCCeEEEEEec-CCCEEEEEE----CCCcEEEEECC
Q 001621 37 TASILAF--DHIQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ-NQGFLISIT----NDNEIQVWSLE 106 (1043)
Q Consensus 37 ~v~~laf--sp~g~lLAvgt~dG~I~v~~~~~~~---~~~~~~~~~~V~~l~Fs~-d~~~Lvs~s----~d~~I~vWdl~ 106 (1043)
.+.|++. +.+.-++|+|..+|.|-+-...+.+ ...+.+...++++++|++ |...|+++- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3667665 4456799999999999986543221 223344566899999988 444555552 45679999999
Q ss_pred CC--ceeEEeec----CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 107 SR--SLACCLKW----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 107 t~--~~l~~~~~----~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
++ .+..+..+ .....++++.-+.+.+.+|.....+.++++........ .-....|.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~------------------svnTk~vq 199 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS------------------SVNTKYVQ 199 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh------------------hhhhhhcc
Confidence 88 33222221 13445677777778888888887776655432100000 00112355
Q ss_pred EEEecCCCCCCEEEEEECCCeEEEEEc-cCCe-EEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEe
Q 001621 181 GVLPHPNSSGNRVLIAYENALVILWDV-SEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~dg~I~lWd~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1043)
.+...|-. ++ .+..+.||.|.+||. ..-+ ++..... ......+.+..++|.
T Consensus 200 G~tVdp~~-~n-Y~cs~~dg~iAiwD~~rnienpl~~i~~-------------------------~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 200 GITVDPFS-PN-YFCSNSDGDIAIWDTYRNIENPLQIILR-------------------------NENKKPKQLFALAYC 252 (783)
T ss_pred cceecCCC-CC-ceeccccCceeeccchhhhccHHHHHhh-------------------------CCCCcccceeeEEec
Confidence 56666642 44 556667999999994 2211 1111100 001124568899995
Q ss_pred cCCC-CEEEEEEc-CCcEEEEcCCC
Q 001621 259 SSSG-SILAVGYI-DGDILLWNTST 281 (1043)
Q Consensus 259 sp~g-~~l~tg~~-DG~I~iWd~~t 281 (1043)
|.. ..+++... .++|+++|+..
T Consensus 253 -Ptrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 253 -PTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -cCCcchhhhhccCcceEEEecccc
Confidence 764 34555554 58899999854
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=2.7 Score=48.86 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=110.1
Q ss_pred CeEEEEEcCCCCEEEEEEc---CCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCcee
Q 001621 37 TASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLA 111 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~---dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s-~d~~I~vWdl~t~~~l 111 (1043)
....++++|+++.+.++.. +++|.+.|......+...+- ..+ ..+++.|++.+++.+. .++.|.+.|..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 5778999999988777766 68999999876666555433 345 8899999999777776 7899999998777666
Q ss_pred E-E----eecCCCEEEEEEeCCCCEEEEEeCCCc-EEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 112 C-C----LKWESNITAFSVISGSHFMYIGDENGL-MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 112 ~-~----~~~~~~Vtav~~sp~~~~l~vG~~dG~-v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
. + +.....-..+.++|++.++|+...... ..+..++...+......+. .... ....+..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------------~~~~-~~~~v~~~ 261 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP-------------VGSG-APRGVAVD 261 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc-------------cccC-CCCceeEC
Confidence 3 2 222344567899999999998776531 2334455544443321111 1112 34567888
Q ss_pred CCCCCCEEEEEEC-CCeEEEEEccCCeEEEEe
Q 001621 186 PNSSGNRVLIAYE-NALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 186 p~d~g~~ll~~~~-dg~I~lWd~~~~~~~~~~ 216 (1043)
|. |+.+.+... .+.+.+-|..+.......
T Consensus 262 p~--g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 262 PA--GKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred CC--CCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 84 776666644 478888888887766543
No 363
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=2.5 Score=45.78 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC--CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~--~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
...|..|.|+|+.+.|+++.....-.||=...|+++.++... +.--++++..++.++++--.++.+.++.++.+...+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345999999999999999999999889888889999998754 455667777788887776667888888888775544
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1043)
....+.++ + +...........++|.|. .++|..+-+..-+.||.+....-.... ++. .
T Consensus 165 ~~~~~~i~---L----~~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~---------~~~----~ 222 (316)
T COG3204 165 SAKVQKIP---L----GTTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSV---------HAS----L 222 (316)
T ss_pred eccceEEe---c----cccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCccccc---------ccc----c
Confidence 42112222 1 111122456789999996 445888888887788877633210000 100 0
Q ss_pred CCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
.|.... ..--..|.++.|+-+++..++-+.+++.|.--|.
T Consensus 223 ~~~~~~------~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 223 DPTADR------DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred Cccccc------ceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 011000 0013457788887455666777777777776665
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.18 E-value=3.2 Score=44.93 Aligned_cols=175 Identities=17% Similarity=0.268 Sum_probs=93.7
Q ss_pred CCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeEEeecC--CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 77 LPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s~-d~~I~vWdl~t~~~l~~~~~~--~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
..+..|.|.|+.+.|+++.. .+.|.-.|+ +|+.+..+... +..-.+++.-++.++++--.++.+.++.++.....+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 35999999998888888775 466766776 58888888654 677888888777666655457878777775543322
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccC---CeEEEEeCCcccccccccccC
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGVVDS 230 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~---~~~~~~~~~~~~~~~~~~~~~ 230 (1043)
....+ . .-.++.+..+...+..|+|.|. +++|+++-+..-..||.+.. ...+....... +
T Consensus 101 ~~~~~--~----~~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~--~------- 163 (248)
T PF06977_consen 101 DRADV--Q----KISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD--L------- 163 (248)
T ss_dssp -EEEE--E----EEE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH--H-------
T ss_pred chhhc--e----EEecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeeccccc--c-------
Confidence 21000 0 0011223345667999999996 55688888877777887764 22221110000 0
Q ss_pred CCCCCCCcccCccCCCCCCCCeEEEEEecCCC-CEEEEEEcCCcEEEEcCCCCC
Q 001621 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTTA 283 (1043)
Q Consensus 231 ~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g-~~l~tg~~DG~I~iWd~~tg~ 283 (1043)
.........+.+++++ |.. ..++-..++..|..+| .+|+
T Consensus 164 ------------~~~~~~~~d~S~l~~~-p~t~~lliLS~es~~l~~~d-~~G~ 203 (248)
T PF06977_consen 164 ------------DDDKLFVRDLSGLSYD-PRTGHLLILSDESRLLLELD-RQGR 203 (248)
T ss_dssp ------------H-HT--SS---EEEEE-TTTTEEEEEETTTTEEEEE--TT--
T ss_pred ------------ccccceeccccceEEc-CCCCeEEEEECCCCeEEEEC-CCCC
Confidence 0000113457889997 554 4555566678888888 4444
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.15 E-value=1.5 Score=51.46 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCeEEEEEecCCCEEEEEE---CC-CcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEE-EEeCCCcEEEEEEeCCCC
Q 001621 77 LPYKNLEFLQNQGFLISIT---ND-NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEG 151 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s---~d-~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~-vG~~dG~v~v~~~d~~~~ 151 (1043)
..+..-.|++++..++-.+ .. ..+.++|+++++........+.-.+-.|+|||+.++ +...||...+|-+|....
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 4455556777765544442 22 469999999998777777777777889999998765 556688888888887655
Q ss_pred eEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC-CC--eEEEEEccCCeE
Q 001621 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEAQI 212 (1043)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~-dg--~I~lWd~~~~~~ 212 (1043)
.+.. +.. ..+.-+.=.|+|+ |+.++-.++ .| .|.+.|...+..
T Consensus 273 ~~~~----Lt~------------~~gi~~~Ps~spd--G~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 273 NLPR----LTN------------GFGINTSPSWSPD--GSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred ccee----ccc------------CCccccCccCCCC--CCEEEEEeCCCCCcceEEECCCCCce
Confidence 4321 110 0111124468894 777665544 44 466667666554
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.01 E-value=2.2 Score=50.24 Aligned_cols=140 Identities=10% Similarity=0.153 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeec
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~ 116 (1043)
.+..+.++|+|+.+++ ..||.-.||.......... +.-....|+++ +..++....++|.++.--+...+..+..
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcC
Confidence 4788999999999999 5688998887544332221 23445678885 5577777788899963323333344554
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEE
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~ 196 (1043)
+..+..+-. |.+|++.+.+ .|.++++. .+++. .++. ..+|..|-|+++ |++++..
T Consensus 108 ~~~~~~If~---G~LL~~~~~~-~i~~yDw~--~~~~i---~~i~--------------v~~vk~V~Ws~~--g~~val~ 162 (443)
T PF04053_consen 108 PFSVEKIFG---GNLLGVKSSD-FICFYDWE--TGKLI---RRID--------------VSAVKYVIWSDD--GELVALV 162 (443)
T ss_dssp SS-EEEEE----SSSEEEEETT-EEEEE-TT--T--EE---EEES--------------S-E-EEEEE-TT--SSEEEEE
T ss_pred CcccceEEc---CcEEEEECCC-CEEEEEhh--Hccee---eEEe--------------cCCCcEEEEECC--CCEEEEE
Confidence 444444433 7777777665 46665544 34444 2332 234899999994 8878887
Q ss_pred ECCCeEEEEEcc
Q 001621 197 YENALVILWDVS 208 (1043)
Q Consensus 197 ~~dg~I~lWd~~ 208 (1043)
+.+.. .|++..
T Consensus 163 t~~~i-~il~~~ 173 (443)
T PF04053_consen 163 TKDSI-YILKYN 173 (443)
T ss_dssp -S-SE-EEEEE-
T ss_pred eCCeE-EEEEec
Confidence 76654 565543
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=0.13 Score=53.39 Aligned_cols=109 Identities=9% Similarity=0.175 Sum_probs=66.5
Q ss_pred EEEEECCCcEEEEECCCCceeEEe-ecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccccc
Q 001621 91 LISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~l~~~-~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1043)
|...++|+.|.-.++...+.-..- ..+..- +.+.-.+.-+++|+.+|.|.+|++..+....- .+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d----~~--------- 97 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD----RV--------- 97 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHH----hh---------
Confidence 556677888877777655432211 111111 33334466789999999999998775321111 00
Q ss_pred CCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCC
Q 001621 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1043)
Q Consensus 170 ~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~ 218 (1043)
.....+|.+.-..-+ ++....++..+|.|+.|++.-++.+.+.++
T Consensus 98 ---~s~~e~i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 98 ---CSGEESIDLGIPNGR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ---hcccccceecccccc-ccceeEEeccCCceeeeccccCceeeeecc
Confidence 011234444444444 455688899999999999998888776654
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.70 E-value=9.3 Score=43.84 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=64.7
Q ss_pred cCCCCEEEEEEc---------CCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 44 DHIQRLLAIATL---------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 44 sp~g~lLAvgt~---------dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
|||++.++..+. .+.+.|||....+..-.......+....|+|++.+++-+. ++.|.++++.++...+--
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 578887777543 3778899988876654444456788999999988777775 688999999888543211
Q ss_pred -ecC-----------------CCEEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 001621 115 -KWE-----------------SNITAFSVISGSHFMYIGD-ENGLMSVIK 145 (1043)
Q Consensus 115 -~~~-----------------~~Vtav~~sp~~~~l~vG~-~dG~v~v~~ 145 (1043)
... +.-.++-++||+++|+... .+..|+.+.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 111 1236788999999887553 334444443
No 369
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.69 E-value=0.026 Score=65.72 Aligned_cols=164 Identities=12% Similarity=0.169 Sum_probs=102.6
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEE----cCCcEEEEcCCCc------eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 001621 33 GIPATASILAFDH-IQRLLAIAT----LDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 33 G~~~~v~~lafsp-~g~lLAvgt----~dG~I~v~~~~~~------~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
++....+++||++ |.+.||+|- .|-.+.|||.... ...+..........++|..+.+.|++|.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4445679999988 567888884 3467899997543 1122221223455788888888888988888999
Q ss_pred EEECCCCceeEEeecCCCEEEEEEeC-CCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeE
Q 001621 102 VWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1043)
Q Consensus 102 vWdl~t~~~l~~~~~~~~Vtav~~sp-~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1043)
++|++.............|..+.++| .++|++.-. +|.|-+|+-. +++.+. ++.....+......+.
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~----------rnienp-l~~i~~~~N~~~~~l~ 247 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY----------RNIENP-LQIILRNENKKPKQLF 247 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccch----------hhhccH-HHHHhhCCCCccccee
Confidence 99987432211111123566788899 777877655 8888888721 111110 1000001112234689
Q ss_pred EEEecCCCCCCEEEEEEC-CCeEEEEEccC
Q 001621 181 GVLPHPNSSGNRVLIAYE-NALVILWDVSE 209 (1043)
Q Consensus 181 sl~~sp~d~g~~ll~~~~-dg~I~lWd~~~ 209 (1043)
.++|.|...|. +++... .++|+++|+..
T Consensus 248 ~~aycPtrtgl-la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 248 ALAYCPTRTGL-LAVLSRDSITIRLYDICV 276 (783)
T ss_pred eEEeccCCcch-hhhhccCcceEEEecccc
Confidence 99999987775 666554 56899999864
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=2.2 Score=45.82 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=83.6
Q ss_pred EEcCCCCEEEEEEcC-----CcEEEEcCC-CceEEEecCC-CCCeEEEEEecCCCEEEEEECC-----------------
Q 001621 42 AFDHIQRLLAIATLD-----GRIKVIGGD-GIEGLLISPS-QLPYKNLEFLQNQGFLISITND----------------- 97 (1043)
Q Consensus 42 afsp~g~lLAvgt~d-----G~I~v~~~~-~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d----------------- 97 (1043)
.|+|+|.+|..--+| |.|-|||.. ..+.+.+++. .-.--.+.+.+||+.|+.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 389999999877665 889999975 3344444432 2234467788998777666431
Q ss_pred -CcEEEEECCCCceeEEeecC-----CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEee-eceeecccccccccC
Q 001621 98 -NEIQVWSLESRSLACCLKWE-----SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAG 170 (1043)
Q Consensus 98 -~~I~vWdl~t~~~l~~~~~~-----~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~-~~~~i~~~~~~~~~~ 170 (1043)
-.+.+.|..+|.++.....+ -.|..++..+++..++-.- |......+.. .....+...+ +.+.
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ---------y~G~~~d~ppLvg~~~~g~~l-~~~~ 269 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ---------YRGPRNDLPPLVGHFRKGEPL-EFLD 269 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE---------eeCCCccCCcceeeccCCCcC-cccC
Confidence 12344555555555433222 3567777776665443211 1111110000 0000000000 0000
Q ss_pred CCC----CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEE
Q 001621 171 FPL----LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1043)
Q Consensus 171 ~~~----~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~ 214 (1043)
.+. .-..-|-+|+.+-+ ++-..+++-..+...+||..++.++.
T Consensus 270 ~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 270 LPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 000 01234677887765 46433444445577899999998864
No 371
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=0.86 Score=57.03 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=91.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEcCCCceE------------------EEecCCCCCeEEEEEecCCCEEEEEECCC--
Q 001621 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEG------------------LLISPSQLPYKNLEFLQNQGFLISITNDN-- 98 (1043)
Q Consensus 39 ~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~------------------~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~-- 98 (1043)
+.++.++...++.++...+.+.||+..+.-. .+..+...+|..+...+|...+++....|
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 4577788888888888888888887544211 12222334566666667766666655544
Q ss_pred cEEEEECCCCc--------eeEEee--c--CCCEEEEEEeCCCCE-EEEEeCCCcEEEEEEeCCCCeEeeeceeeccccc
Q 001621 99 EIQVWSLESRS--------LACCLK--W--ESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1043)
Q Consensus 99 ~I~vWdl~t~~--------~l~~~~--~--~~~Vtav~~sp~~~~-l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~ 165 (1043)
.|..+|+++-. +++.-. . .....++.+.|.-.. .++...|+.|+|..+.... +.+.
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~-------~~v~---- 193 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA-------QNVT---- 193 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh-------hhhc----
Confidence 78899987632 221111 1 134556667766433 4455667777765443210 0000
Q ss_pred ccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEcc
Q 001621 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1043)
Q Consensus 166 ~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~ 208 (1043)
. ..-...+++++|+|+ |+++++|..+|+++-|-..
T Consensus 194 --s----~p~t~~~Tav~WSpr--GKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 194 --S----FPVTNSQTAVLWSPR--GKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred --c----cCcccceeeEEeccc--cceeeEecCCCeEEEeecc
Confidence 0 012346899999997 9999999999998777643
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=14 Score=40.25 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=112.6
Q ss_pred Cccceeeec--ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCCC--CCeEEEEEecCCCEEEEEECCC
Q 001621 23 DLNLRIAVH--YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ--LPYKNLEFLQNQGFLISITNDN 98 (1043)
Q Consensus 23 ~~~~~~~~~--~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~--~~V~~l~Fs~d~~~Lvs~s~d~ 98 (1043)
.+..++... .|....+++|+|+|+.+.|.+-++.+.--|+=...++.+...|-. .---.|++..++.+.++-=.++
T Consensus 71 ~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 71 EYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred CceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence 344444455 688888999999999987777777766666654555555544422 2234566777766666655688
Q ss_pred cEEEEECCCCceeEEe-----ec------CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeeccccccc
Q 001621 99 EIQVWSLESRSLACCL-----KW------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~-----~~------~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~ 167 (1043)
++.+..+.....+..+ .. ....-.++++|....++++=+-.-+.|+.++.....+...--..+. ...
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~--~~~ 228 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT--ADR 228 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc--ccc
Confidence 8888888766433221 11 1345679999999999999888878888776433222210000000 000
Q ss_pred ccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC
Q 001621 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 168 ~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
. --...|.++.|++. .++.|+.+.+++.+.-.|....
T Consensus 229 ~-----~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 229 D-----LFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred c-----eEeeccccceecCC-CCcEEEEecCCceEEEEecCCC
Confidence 0 01346788999986 4666777778888877776543
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.30 E-value=12 Score=39.92 Aligned_cols=101 Identities=8% Similarity=0.089 Sum_probs=73.9
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEE-EEE
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITA-FSV 125 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vta-v~~ 125 (1043)
..++..|+..|.+.--|...+...+.-.-...|.+-+..-+ .++|.+.-.+.+.+.+..||.....+...+.|.+ -..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEEC-CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 45788899999888888877777765444444444333333 5688888999999999999988777765554443 346
Q ss_pred eCCCCEEEEEeCCCcEEEEEEeC
Q 001621 126 ISGSHFMYIGDENGLMSVIKYDA 148 (1043)
Q Consensus 126 sp~~~~l~vG~~dG~v~v~~~d~ 148 (1043)
++++..++.|+.|++.++.|+..
T Consensus 102 d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred cCCCceEEEecCCCcEEEecccc
Confidence 78999999999999886655443
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.26 E-value=3.3 Score=50.81 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCceEEEec-CCCCCeEEEEEecCCCEEEEEE------CCCc--EEEEECCCCceeEEeecCCCEEEEEEe
Q 001621 56 DGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISIT------NDNE--IQVWSLESRSLACCLKWESNITAFSVI 126 (1043)
Q Consensus 56 dG~I~v~~~~~~~~~~~~-~~~~~V~~l~Fs~d~~~Lvs~s------~d~~--I~vWdl~t~~~l~~~~~~~~Vtav~~s 126 (1043)
+|.+.-.+..+.+.+-.. .....+...+++||+.+++... .|.. |.+++.. +.. ..+......+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceEC
Confidence 787776665544433111 1123678889999998887776 2444 4444542 222 333223348889999
Q ss_pred CCCCEEEEEeCCCc-EEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEE
Q 001621 127 SGSHFMYIGDENGL-MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL 204 (1043)
Q Consensus 127 p~~~~l~vG~~dG~-v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~l 204 (1043)
|+|.++++...... +++..-+ ..+++.. ..+...+.. ......|..+.|+| ||.+++... +|.|.+
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~-~~gql~~--~~vd~ge~~------~~~~g~Issl~wSp--DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDP-ATGQLAR--TPVDASAVA------SRVPGPISELQLSR--DGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceEEEecCcceEEEeccC-CCceEEE--EeccCchhh------hccCCCcCeEEECC--CCCEEEEEE-CCEEEE
Confidence 99988877654322 2222111 1122211 111111110 01235699999999 598887765 355544
No 375
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=92.96 E-value=1.5 Score=40.42 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=52.6
Q ss_pred ceEEEEeecCCCCCCCCCceEEEecCCC---CCCcceEEEEEcCcccccccceeeeeEeecCCCceeEEEEeecCCC-CC
Q 001621 309 PVIVLHWSTNKESRSNIDGRLFVYGGDE---IGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA-TV 384 (1043)
Q Consensus 309 ~i~~l~w~~~~~~~~~~~~~llv~gg~~---~~~~~~ltv~~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~s~-~g 384 (1043)
+|.++.|.... + ...-++++||-. .+++++++++. +. ....|....+++||..+....+ ..
T Consensus 15 ~I~Ki~w~~~~---~-~~~~iiFsGGmp~~~ygdr~~vTV~~-g~----------~~~~ldf~s~VIDF~~i~~~~~~~e 79 (105)
T PF08366_consen 15 AINKILWRTSR---N-GEPFIIFSGGMPRASYGDRHCVTVMQ-GK----------THVVLDFTSRVIDFFTICESPWPNE 79 (105)
T ss_pred eeeEEEEEecC---C-CCcEEEEeCCccccccCCCceEEEEe-CC----------EEEEEEcCCceEEEEEEcCCCCccc
Confidence 55566665422 1 123455667653 34568999986 21 1345677889999999987655 35
Q ss_pred CCCccEEEEEcCCCeEEEeec
Q 001621 385 GNHKADLFVLTSPGQLHFYDN 405 (1043)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~ 405 (1043)
.++|.+++||++. +|++.|.
T Consensus 80 ~~~P~alvVL~e~-eLVvIDL 99 (105)
T PF08366_consen 80 FQDPYALVVLLEE-ELVVIDL 99 (105)
T ss_pred cCCCcEEEEEEcC-cEEEEEC
Confidence 6789999888765 6667774
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.83 E-value=9.5 Score=45.92 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCCC-------eE--EEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecC
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-------YK--NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE 117 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~-------V~--~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~ 117 (1043)
+..+.+++.+|.|+-+|....+.+........ +. .+... +++.++.++.++.|.-+|.++|+.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45677788899999999887777665432211 10 11111 2257888889999999999999998877654
Q ss_pred CC------EE-EEEEeCCCCEEEEEeC---------CCcEEEEEEeCCCCeEe
Q 001621 118 SN------IT-AFSVISGSHFMYIGDE---------NGLMSVIKYDADEGKLF 154 (1043)
Q Consensus 118 ~~------Vt-av~~sp~~~~l~vG~~---------dG~v~v~~~d~~~~~l~ 154 (1043)
.. +. +..+. +..+++|+. +| .|+.+|...++..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g--~v~alD~~TG~~~ 188 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRG--ALRAYDVETGKLL 188 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCc--EEEEEECCCCcee
Confidence 33 21 11222 356777764 34 4577777666655
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.73 E-value=0.21 Score=51.91 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=69.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-CCceeeeeeccceeeEEecCCCCCeEE-EEEecCCCeEEEEecCccEEEEEecCCCcc
Q 001621 494 VDRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVST-LSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1043)
Q Consensus 494 ~~~~l~tg~~DgtVriWD~~~-~~l~~l~~l~~~~~~v~~~~~~~~V~~-l~fspd~~~La~g~~dG~V~i~~~~~~~~~ 571 (1043)
...-++.|+.||.|.+|+..- +.+..+.. .+- .+|.+ |.--.++.+..++..+|.||.|....+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~----------s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC----------SGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhh----------ccc-ccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 344688899999999998651 11111110 011 12222 222345567889999999999999876543
Q ss_pred cceeeeccCCCceeeecCCCcceeeEEecCCC-CCEEEEEEcCCCcEEEEE--eCCCeEEEEEcCC
Q 001621 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFTSSGAKLAVG--FECGRVAVLDMNL 634 (1043)
Q Consensus 572 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~la~s~dg~~lA~G--s~dg~V~vwD~~~ 634 (1043)
+. ...|+ .++..+..+..+++|+++ |.|..++.|++..
T Consensus 138 g~-------------------------~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GY-------------------------VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ee-------------------------eccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 21 13466 678888888888889998 8999999999863
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.57 E-value=7.7 Score=42.24 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCEEEEEE---cCCcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE-CCCCcee-
Q 001621 37 TASILAFDHIQRLLAIAT---LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLA- 111 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt---~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWd-l~t~~~l- 111 (1043)
.+...|.+++++.+|.-+ ....++++...+...... ....+..-.|.+++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 578899999999877766 234555554433222211 223677788999955555555566666763 3344322
Q ss_pred EEeecC---CCEEEEEEeCCCCEEEEEe---CCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 112 CCLKWE---SNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 112 ~~~~~~---~~Vtav~~sp~~~~l~vG~---~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
..+... +.|++|.++|||..+++-. .++.|.|-.+.-+.... |..+.. ...........++.+.|.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~---~~~l~~-----~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV---PRRLTG-----PRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC---cceecc-----ceEecccccCcceeeeec
Confidence 222222 3899999999999887665 24555554433222110 111110 000111234689999999
Q ss_pred CCCCCCEEEEEEC
Q 001621 186 PNSSGNRVLIAYE 198 (1043)
Q Consensus 186 p~d~g~~ll~~~~ 198 (1043)
+. +.+++.+..
T Consensus 175 ~~--~~L~V~~~~ 185 (253)
T PF10647_consen 175 DD--STLVVLGRS 185 (253)
T ss_pred CC--CEEEEEeCC
Confidence 84 653333333
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.23 E-value=10 Score=42.46 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=93.0
Q ss_pred cCCCCeEEEE-EcCCCCEEEEEEcCCcEEEEcCCCceE---EEecCC---CCCeEEEEEecCCCEEEEEECCC-------
Q 001621 33 GIPATASILA-FDHIQRLLAIATLDGRIKVIGGDGIEG---LLISPS---QLPYKNLEFLQNQGFLISITNDN------- 98 (1043)
Q Consensus 33 G~~~~v~~la-fsp~g~lLAvgt~dG~I~v~~~~~~~~---~~~~~~---~~~V~~l~Fs~d~~~Lvs~s~d~------- 98 (1043)
..|+.++++. ++..+.++++.. .+++++.+.... +..... ...-..+...|+|.+-+ ++..+
T Consensus 63 ~~p~~~~~~~~~d~~g~Lv~~~~---g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~ 138 (307)
T COG3386 63 PSPGGFSSGALIDAGGRLIACEH---GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWF-GDMGYFDLGKSE 138 (307)
T ss_pred ECCCCcccceeecCCCeEEEEcc---ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEE-eCCCccccCccc
Confidence 3455555543 455555544433 344455432222 222211 13445666777755433 33331
Q ss_pred ---cEEEEECC-CCceeEEeecC-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCC
Q 001621 99 ---EIQVWSLE-SRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1043)
Q Consensus 99 ---~I~vWdl~-t~~~l~~~~~~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1043)
.-.||-+. .+..+..+..+ ..-+.++||||++.||+...... ++|.++.+..... +.. ....... .
T Consensus 139 ~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~-~i~r~~~d~~~g~-----~~~--~~~~~~~-~ 209 (307)
T COG3386 139 ERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN-RIHRYDLDPATGP-----IGG--RRGFVDF-D 209 (307)
T ss_pred cCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC-eEEEEecCcccCc-----cCC--cceEEEc-c
Confidence 11344444 34433333332 33468999999999999887632 4555554321000 000 0000000 0
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCC-eEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCe
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg-~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V 252 (1043)
...+..-.++.-. +|+.-+++..+| .|..|+-. ++.+.... +| ...+
T Consensus 210 ~~~G~PDG~~vDa--dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---------lP--------------------~~~~ 257 (307)
T COG3386 210 EEPGLPDGMAVDA--DGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---------LP--------------------VKRP 257 (307)
T ss_pred CCCCCCCceEEeC--CCCEEEecccCCceEEEECCC-CcEEEEEE---------CC--------------------CCCC
Confidence 0112222233322 576333444444 78888877 77665542 22 3667
Q ss_pred EEEEEecCCCCEEEEEEc
Q 001621 253 SALCWASSSGSILAVGYI 270 (1043)
Q Consensus 253 ~sl~w~sp~g~~l~tg~~ 270 (1043)
+++||-.|+.+.|...+.
T Consensus 258 t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 258 TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccceEeCCCcCEEEEEec
Confidence 888998777676665543
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.21 E-value=12 Score=40.68 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=67.6
Q ss_pred CCeEEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 77 LPYKNLEFLQNQGFLISIT---NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s---~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
..+...+.++++..++.+. ....+.++. .+.....+.....++.-.|++++...++...+...+++.... .+..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~-~g~~ 100 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA-SGTG 100 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecC-CCcc
Confidence 3688899999988887776 233455554 444333333344778888999977777766666565554211 1222
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC---CCeEEEEE
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWD 206 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~---dg~I~lWd 206 (1043)
. +..+.+.. ...+|.++.++| ||.+++.... ++.|.+=-
T Consensus 101 ~--~~~v~~~~----------~~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 101 E--PVEVDWPG----------LRGRITALRVSP--DGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred e--eEEecccc----------cCCceEEEEECC--CCcEEEEEEecCCCCeEEEEE
Confidence 1 12222111 112899999999 5999887663 34554433
No 381
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.12 E-value=5.8 Score=38.15 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcCCCce--------EEEecCCCCCeEEEEEec----CCCEEEEEECCCcEEEEEC
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~--------~~~~~~~~~~V~~l~Fs~----d~~~Lvs~s~d~~I~vWdl 105 (1043)
|+.-.||...--||.++..|+|.|.+..... .+..+.-...|++|+--+ ++.-++.++....|..||+
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 3455788888899999999999999753221 111122234677765332 2334566667788999999
Q ss_pred CCCceeEEeecCCCEEEEEEeC----CCCEEEEEeCCCcEEEEEEeCCCCeEe
Q 001621 106 ESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSVIKYDADEGKLF 154 (1043)
Q Consensus 106 ~t~~~l~~~~~~~~Vtav~~sp----~~~~l~vG~~dG~v~v~~~d~~~~~l~ 154 (1043)
+...-+..-..+..|+++.+-. ...++++|+ ...|+-+|.+..++.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCCcEEE
Confidence 9887766555667788887742 345667663 345566666544443
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.79 E-value=14 Score=44.52 Aligned_cols=160 Identities=12% Similarity=0.159 Sum_probs=90.9
Q ss_pred EEEEcCCCCEEEEEEcCC------------------cEEEEcCCCceEEEecCCC-CCe------EEEEEe----cCCC-
Q 001621 40 ILAFDHIQRLLAIATLDG------------------RIKVIGGDGIEGLLISPSQ-LPY------KNLEFL----QNQG- 89 (1043)
Q Consensus 40 ~lafsp~g~lLAvgt~dG------------------~I~v~~~~~~~~~~~~~~~-~~V------~~l~Fs----~d~~- 89 (1043)
..++++.+.++.+++.+| .|.-+|..+.+........ ... ....+. -++.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 357788888888998776 6888898888887764321 000 000111 1222
Q ss_pred --EEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEe------------------CCCcEEEEEEeCC
Q 001621 90 --FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD------------------ENGLMSVIKYDAD 149 (1043)
Q Consensus 90 --~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~------------------~dG~v~v~~~d~~ 149 (1043)
.++.++.+|.+...|.++|+.+-...... ..++.+| ..+|++. .+| +++.+|..
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G--~l~AlD~~ 374 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG--GLAALDPK 374 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCce--EEEEEeCC
Confidence 56777789999999999999887654220 1123333 4555543 234 34666665
Q ss_pred CCeEeeeceeecccccccccCCCCCCCCCe--EEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 150 EGKLFQLPYNISADALSEKAGFPLLSHQPV--VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V--~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
.++.. |+.+.... .. . .....+. ..+.. .+..|.+++.+|.|..+|.++|+.+-..
T Consensus 375 tG~~~---W~~~~~~~-~~--~-~~~g~~~~~~~~~~----~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 375 TGKVV---WEKREGTI-RD--S-WNIGFPHWGGSLAT----AGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCcEe---eEeeCCcc-cc--c-cccCCcccCcceEe----cCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 55544 22221000 00 0 0000011 11111 2345888889999999999999987654
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.79 E-value=26 Score=39.32 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=82.9
Q ss_pred EEcCCCC-EEEEEEcCCcEEEEcCC-CceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEee--c-
Q 001621 42 AFDHIQR-LLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--W- 116 (1043)
Q Consensus 42 afsp~g~-lLAvgt~dG~I~v~~~~-~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~--~- 116 (1043)
.|+++.. ++.+--..++|+-|+.. +....+..+. .+.++....+++.|+++.. -+.+++.+++.....+. .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~--~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG--GFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC--CcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 3677766 66677777899999875 4455555553 3455555556567777643 46677777665532221 1
Q ss_pred ---CCCEEEEEEeCCCCEEEEEeCC---C------cEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 117 ---ESNITAFSVISGSHFMYIGDEN---G------LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 117 ---~~~Vtav~~sp~~~~l~vG~~d---G------~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
....+...++|+|.+.+..... + .=+||.++....... ....+..--.+|+|
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~----------------l~~~~~~~~NGla~ 170 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR----------------LLDDDLTIPNGLAF 170 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE----------------eecCcEEecCceEE
Confidence 1356778899998876654431 0 012344443211111 00112233478999
Q ss_pred cCCCCCCEEEEEEC-CCeEEEEEcc
Q 001621 185 HPNSSGNRVLIAYE-NALVILWDVS 208 (1043)
Q Consensus 185 sp~d~g~~ll~~~~-dg~I~lWd~~ 208 (1043)
+|+ ++.|..+-. .+.|.-|++.
T Consensus 171 SpD--g~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 171 SPD--GKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CCC--CCEEEEEeCCCCeEEEEecC
Confidence 995 765655544 4677777665
No 384
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.38 E-value=1 Score=48.51 Aligned_cols=154 Identities=18% Similarity=0.277 Sum_probs=80.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccc-cCC----CCCCCCCeEEEEecCCCCCC
Q 001621 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK-AGF----PLLSHQPVVGVLPHPNSSGN 191 (1043)
Q Consensus 117 ~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~-~~~----~~~~~~~V~sl~~sp~d~g~ 191 (1043)
...|+++.|+..|.|+++|...|.|-++.-....++ .|++... +|.. ..+ ...-...|..+.|..+..-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c----eykf~te-FQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC----EYKFFTE-FQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccccc----chhhhhh-hcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 357999999999999999999996654432211111 0211110 0000 000 01123457778776532333
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCc----------ccCc-----c--CCCCCCCCeEE
Q 001621 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF----------LEGI-----S--EHQPEEKEISA 254 (1043)
Q Consensus 192 ~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~-----~--~~~~~~~~V~s 254 (1043)
.++....|.+|+||-+.+..+....+. .+....+.+..|+...+ .+++ + ....|.-.|.+
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~n---nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAEN---NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhcc---ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 578888999999999987643221111 00000000000000000 0000 0 12335667889
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEcCC
Q 001621 255 LCWASSSGSILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 255 l~w~sp~g~~l~tg~~DG~I~iWd~~ 280 (1043)
+.++ .|...++++ .|=.|.+|++.
T Consensus 178 iS~N-sD~et~lSa-DdLrINLWnl~ 201 (460)
T COG5170 178 ISFN-SDKETLLSA-DDLRINLWNLE 201 (460)
T ss_pred eeec-Cchheeeec-cceeeeecccc
Confidence 9997 677776655 56788999875
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.85 E-value=27 Score=41.02 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC---CCCe-----EEEEEecCCCEEEEEECCCcEEEEECCC
Q 001621 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS---QLPY-----KNLEFLQNQGFLISITNDNEIQVWSLES 107 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~---~~~V-----~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t 107 (1043)
+.+.++.|+.+..|+++ ..||.+++|+..+.. .+.++. ...| ....|..+| ++....++.+.+-+-..
T Consensus 81 ~~iv~~~wt~~e~LvvV-~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVV-QSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEE-EcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 56888889887666654 589999999986544 333332 1122 223445465 45455556554443322
Q ss_pred Cc-eeEEe-ecCCCEE---------E-EEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCC
Q 001621 108 RS-LACCL-KWESNIT---------A-FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1043)
Q Consensus 108 ~~-~l~~~-~~~~~Vt---------a-v~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1043)
.. ....+ ..+...+ . ..++.+....+....++.+.+. +.. .+ . ....
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i--~~~-------~~--------~----~i~~ 215 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYII--DEN-------SF--------K----QIDS 215 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEE--Ecc-------cc--------c----cccC
Confidence 21 11111 1111111 1 1222233322222223322211 110 00 0 0112
Q ss_pred CCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEe
Q 001621 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 176 ~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~ 216 (1043)
.+++..++.||+ |+.++.-..+|.+.+.+..-.+.+..+
T Consensus 216 ~~~i~~iavSpn--g~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPN--GKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCC--CCEEEEEECCCCEEEEECcccceeEEe
Confidence 468999999995 887777777899888776555554443
No 386
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.60 E-value=3.3 Score=48.61 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=79.0
Q ss_pred cCccceeeecccCCCCeEEEEEcCCCCEEEEEE-cCC----cEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC
Q 001621 22 ADLNLRIAVHYGIPATASILAFDHIQRLLAIAT-LDG----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1043)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt-~dG----~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~ 96 (1043)
.+||+......+-...+..++++|+|++||.+- ..| +|+|+|....+.+-..-.......+.|.+|+..|+-...
T Consensus 110 vllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 110 VLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEEC
T ss_pred EEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEe
Confidence 356666554433223345688999999999874 334 499999987765532111122234999999777766653
Q ss_pred CC-----------cEEEEECCCCcee--EEee--cCCC-EEEEEEeCCCCEEEEEeCCCc--EEEEEEeCCC
Q 001621 97 DN-----------EIQVWSLESRSLA--CCLK--WESN-ITAFSVISGSHFMYIGDENGL--MSVIKYDADE 150 (1043)
Q Consensus 97 d~-----------~I~vWdl~t~~~l--~~~~--~~~~-Vtav~~sp~~~~l~vG~~dG~--v~v~~~d~~~ 150 (1043)
+. .|..|.+.+...- -.+. .+.. ...+..+++++++++....+. -.+|-++...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 33 3888998876432 2222 2233 678889999999887665543 3556665543
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.22 E-value=12 Score=46.96 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=53.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEE-----EcCCC--------ceEE--------EecCCCCCeEEEEEecC---CCEEE
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKV-----IGGDG--------IEGL--------LISPSQLPYKNLEFLQN---QGFLI 92 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v-----~~~~~--------~~~~--------~~~~~~~~V~~l~Fs~d---~~~Lv 92 (1043)
.|..+.++|+|++||..+..|.+.+ |+..+ ..+- +.......|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5888999999999999988775554 54321 1111 11223458999999986 48999
Q ss_pred EEECCCcEEEEECCCC
Q 001621 93 SITNDNEIQVWSLESR 108 (1043)
Q Consensus 93 s~s~d~~I~vWdl~t~ 108 (1043)
.-..||++++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999999764
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.21 E-value=2.5 Score=49.13 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=59.8
Q ss_pred EEEEecCCCeEEEEecCccEEE---EEecCCC-cccceeeeccCCCceeeecCCCcceeeEEecCCC-CCEEEEEE----
Q 001621 541 TLSFCFINSSLAVGNEFGLVYI---YNLNGSL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQF---- 611 (1043)
Q Consensus 541 ~l~fspd~~~La~g~~dG~V~i---~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~la~---- 611 (1043)
.++.+|++..||.|..+..|.+ |+-.... ........ +...+..-. ..||++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~-----------------~~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSIS-----------------WSGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEE-----------------eeeeccCCCCCEEEEEEEEEee
Confidence 4688999999999988776665 3322211 11111000 001111111 34555544
Q ss_pred -------cCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEee
Q 001621 612 -------TSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1043)
Q Consensus 612 -------s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~ 659 (1043)
.+|...+|+|+.+|.|+++... +.+++...+ +..||..|.+...
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q~~---h~~pV~~ik~~~~ 119 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQLL---HEEPVLKIKCRST 119 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEecc-chHHHHHhc---CccceEEEEeccc
Confidence 2557899999999999999984 455555444 6899999999743
No 389
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.19 E-value=54 Score=40.29 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=41.6
Q ss_pred eeCcEEEEeCCChhhhhhhcccceeeeeccCCCceeeEe-cCCcEEEEccceeEEEEe
Q 001621 772 QTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISA-DNGQITLANGSEVAFVNL 828 (1043)
Q Consensus 772 ~dG~i~i~slp~l~~~~~~~l~~~~~~~~~~~~~~~i~~-sdg~~~l~~g~e~~~~s~ 828 (1043)
.+++|.+|++|.+......+++++..=.. ...-++.. |..+++|+++..|.++.+
T Consensus 249 ~~~~i~~ysip~f~~~~tI~l~~ii~~~~--~~~vSl~~~s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 249 SKKTISSYSIPNFQIQKTISLPSIIDKES--DDLVSLKPPSPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred eCCEEEEEEcCCceEEEEEEechhhcccc--ccceEeecCCCCeEEEEcCCEEEEEee
Confidence 88999999999999888888886432221 23344444 389999999999999877
No 390
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.82 E-value=0.88 Score=56.67 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=54.6
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
|.....-+|+|-+.+| .||+|+.+|.||+||.-+......+|. ..||..|..+.||.+|++.+ +..|.|+++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3334457888877665 679999999999999766555445555 68999999999999888765 556667764
No 391
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.45 E-value=5.1 Score=38.51 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=77.1
Q ss_pred EEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcC-----CCc
Q 001621 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-----SGA 616 (1043)
Q Consensus 542 l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~-----dg~ 616 (1043)
-.|......|++++..|.|.|++.......... .... ..+..-+..|+||+-.+ ...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----~~~~-------------i~~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----QDSD-------------ISFLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-----ccCc-------------eeEEECCCceEEEEEEecCCCCCcC
Confidence 356677778999999999999998654322110 0000 11223456788887655 345
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEE
Q 001621 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1043)
Q Consensus 617 ~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~ 696 (1043)
.|.+|+... +..+|+...+-+|...+ +.+|.++.+...+.. ... |+...-+-.|.-
T Consensus 66 ~LliGt~t~-llaYDV~~N~d~Fyke~----~DGvn~i~~g~~~~~------------------~~~-l~ivGGncsi~G 121 (136)
T PF14781_consen 66 CLLIGTQTS-LLAYDVENNSDLFYKEV----PDGVNAIVIGKLGDI------------------PSP-LVIVGGNCSIQG 121 (136)
T ss_pred EEEEeccce-EEEEEcccCchhhhhhC----ccceeEEEEEecCCC------------------CCc-EEEECceEEEEE
Confidence 788888775 78999998887766554 588999999765421 122 444444566776
Q ss_pred EcCCCCCe
Q 001621 697 VGGSSENM 704 (1043)
Q Consensus 697 ~d~~~g~~ 704 (1043)
||.+..++
T Consensus 122 fd~~G~e~ 129 (136)
T PF14781_consen 122 FDYEGNEI 129 (136)
T ss_pred eCCCCcEE
Confidence 77655544
No 392
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.54 E-value=2 Score=43.78 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=49.9
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEE----------------------EEeecC-----------C-----CC
Q 001621 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL----------------------FFTDDI-----------S-----GS 647 (1043)
Q Consensus 606 Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l----------------------~~~~~~-----------~-----~~ 647 (1043)
..+|+||.||+ ||+++.+. |.|+|..+|..+ +..+.. . ..
T Consensus 7 ~~~l~WS~Dg~-laV~t~~~-v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s 84 (173)
T PF12657_consen 7 PNALAWSEDGQ-LAVATGES-VHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEIS 84 (173)
T ss_pred CcCeeECCCCC-EEEEcCCe-EEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccc
Confidence 35899999996 88887776 667765555400 000000 0 01
Q ss_pred CCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcCCCC
Q 001621 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1043)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~~~g 702 (1043)
...|.+++|||.|.. .+.+-+|++.|.+|.|.+|.....
T Consensus 85 ~~~vv~~aWSP~Gl~----------------~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLG----------------PNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cccEEEEEECCCCCC----------------CCCceEEEEEcCCCeEEEEecCCC
Confidence 126777777765421 234567999999999999997643
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.30 E-value=18 Score=39.17 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=68.4
Q ss_pred ccCCCCeEEEEEcCCC-CEEEEEEcCCcEE-EEcCCCceEEEecC---CCCCeEEEEEecCCCEEEEEECC-----CcEE
Q 001621 32 YGIPATASILAFDHIQ-RLLAIATLDGRIK-VIGGDGIEGLLISP---SQLPYKNLEFLQNQGFLISITND-----NEIQ 101 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g-~lLAvgt~dG~I~-v~~~~~~~~~~~~~---~~~~V~~l~Fs~d~~~Lvs~s~d-----~~I~ 101 (1043)
.-.|.....++|+|.- .-+|.+-.-|+-- +||.++.+...... .+.-.-.=.|++||.+|.+.-.| |.|=
T Consensus 64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEE
Confidence 3445555667888864 4577777777644 57765433222111 12223344699999999887554 6788
Q ss_pred EEECCCC-ceeEEeecCC-CEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001621 102 VWSLESR-SLACCLKWES-NITAFSVISGSHFMYIGDENGLMSVI 144 (1043)
Q Consensus 102 vWdl~t~-~~l~~~~~~~-~Vtav~~sp~~~~l~vG~~dG~v~v~ 144 (1043)
|||...+ +.+.++..++ .-..+.+.+||+.|+++ +|-|+..
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 9998754 3445554442 34567788999999876 4545543
No 394
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=88.25 E-value=0.32 Score=36.98 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhh
Q 001621 998 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1036 (1043)
Q Consensus 998 ~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~ 1036 (1043)
+|+.+|.+||=.+-+.+.-=.+.|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999998888766667799999999999999873
No 395
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.14 E-value=13 Score=41.62 Aligned_cols=165 Identities=14% Similarity=0.143 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcC--CCceEEE----ecCCCCCeE-EEEEecCCCEEEEEECCCcEEEEECC
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGG--DGIEGLL----ISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~--~~~~~~~----~~~~~~~V~-~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
.|+.+......+ +-+.+-+.||++-.... ++.+... -.+...++- .=++..+++.++-.+-+|.|+--|+.
T Consensus 136 ~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 136 TPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp GTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred CCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 344444433333 33666778888877543 3333211 112223332 33455555667777888888888876
Q ss_pred CCcee--EEeec-----------CCCEEEEEEeCCCCEEEEEeC--------CCcEEEEEEeCCCCeEeeeceeeccccc
Q 001621 107 SRSLA--CCLKW-----------ESNITAFSVISGSHFMYIGDE--------NGLMSVIKYDADEGKLFQLPYNISADAL 165 (1043)
Q Consensus 107 t~~~l--~~~~~-----------~~~Vtav~~sp~~~~l~vG~~--------dG~v~v~~~d~~~~~l~~~~~~i~~~~~ 165 (1043)
..... ..+.. ++.-..+++++..+.||+-.. ++.-.||.+|...++.. .+++-
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv---~Ri~l--- 287 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV---ARIPL--- 287 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE---EEEEE---
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE---EEEeC---
Confidence 65432 22211 234456788888888887543 34467899999877665 45541
Q ss_pred ccccCCCCCCCCCeEEEEecCCCCCCEEEEEE-CCCeEEEEEccCCeEEEEeC
Q 001621 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGG 217 (1043)
Q Consensus 166 ~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~-~dg~I~lWd~~~~~~~~~~~ 217 (1043)
..++.+|+.+.++.. +|++.. .++.+.+||..+++.+....
T Consensus 288 ----------~~~~~Si~Vsqd~~P-~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 288 ----------EHPIDSIAVSQDDKP-LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ----------EEEESEEEEESSSS--EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ----------CCccceEEEccCCCc-EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 134678888886433 454444 57899999999999887764
No 396
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.06 E-value=1.4 Score=33.46 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCC---cEEEEEeCCCeEEEEEcCC
Q 001621 604 SPVRALQFTSSG---AKLAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 604 ~~Vt~la~s~dg---~~lA~Gs~dg~V~vwD~~~ 634 (1043)
+.|.+++|||.. .+||..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4899999999999999995
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.31 E-value=26 Score=43.43 Aligned_cols=157 Identities=15% Similarity=0.226 Sum_probs=98.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEE------Ee---cC--------------CCCCeEEEEE--ecCC
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL------LI---SP--------------SQLPYKNLEF--LQNQ 88 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~------~~---~~--------------~~~~V~~l~F--s~d~ 88 (1043)
+....+|+.= ..+|.+|. .+.|+||+.+..... +. .+ ....|..|.. ..+.
T Consensus 39 fKNNLtalsq---~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 39 FKNNLTALSQ---RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred cccceeEEec---CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 4444555432 77888876 679999986443221 00 00 0123444433 3355
Q ss_pred CEEEEEECCCcEEEEECCC-------C-------------ceeEEeecCCCEEEEEEe--CCCCEEEEEeCCCcEEEEEE
Q 001621 89 GFLISITNDNEIQVWSLES-------R-------------SLACCLKWESNITAFSVI--SGSHFMYIGDENGLMSVIKY 146 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t-------~-------------~~l~~~~~~~~Vtav~~s--p~~~~l~vG~~dG~v~v~~~ 146 (1043)
..|+.+..||.|.+|.+++ . ++...+.-+...+.+++. ...+++|+++....|.|+.+
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 7899999999999997632 0 012223345688999998 88889999999899999988
Q ss_pred eCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCC---CC-EEEEEECCCeEEEEEcc
Q 001621 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS---GN-RVLIAYENALVILWDVS 208 (1043)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~---g~-~ll~~~~dg~I~lWd~~ 208 (1043)
.....+.. ..+ ...+..-|-+|+|-+++. |. .|+.++-.|.+.+|++.
T Consensus 195 ~l~~~r~~----~~~----------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 195 ALVDERFY----HVP----------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eccccccc----ccc----------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 77432221 110 012345577888877642 32 56667788999888873
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=6.6 Score=45.73 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=89.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCC-------eEEEEecCccEEEEEecCCC
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-------SLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~-------~La~g~~dG~V~i~~~~~~~ 569 (1043)
+|.+|..-..++=-|+++|.+.....++ . .|+-+.|.|+++ .-.+|-.+..|.-||.+.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~-----------~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE-----------D-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc-----------C-CcceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 5556666667888899988743322222 1 266666777643 12357777888888876432
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~ 649 (1043)
.. .-.+.++. + + .-...-.|.+-.-+| ++|+||.+|.||++|. .++.-.+ ..++.+.
T Consensus 416 ~~------------kl~~~q~k--q----y-~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKT--AlPgLG~ 472 (644)
T KOG2395|consen 416 KN------------KLAVVQSK--Q----Y-STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKT--ALPGLGD 472 (644)
T ss_pred cc------------eeeeeecc--c----c-ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhh--cccccCC
Confidence 21 00000000 0 0 012235567767777 7999999999999998 3322222 2245678
Q ss_pred CeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcC
Q 001621 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~ 699 (1043)
+|+.+..+.+|. .+.+|-+..+.++|.
T Consensus 473 ~I~hVdvtadGK-----------------------wil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 473 AIKHVDVTADGK-----------------------WILATCKTYLLLIDT 499 (644)
T ss_pred ceeeEEeeccCc-----------------------EEEEecccEEEEEEE
Confidence 999999876552 577888899999884
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=7.7 Score=45.21 Aligned_cols=197 Identities=15% Similarity=0.158 Sum_probs=108.9
Q ss_pred CCeEEEEEcC-CCCEEEEEEcC------CcEEEEcC-CCceEEEecCC--------CCCeEEEEEecCCC-EEEEEECCC
Q 001621 36 ATASILAFDH-IQRLLAIATLD------GRIKVIGG-DGIEGLLISPS--------QLPYKNLEFLQNQG-FLISITNDN 98 (1043)
Q Consensus 36 ~~v~~lafsp-~g~lLAvgt~d------G~I~v~~~-~~~~~~~~~~~--------~~~V~~l~Fs~d~~-~Lvs~s~d~ 98 (1043)
+.+..+++.. +.+.|++|... .+|-||.. ++.+....+.. ..|=+.+-...+.. .|.++...+
T Consensus 277 ~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~~ 356 (644)
T KOG2395|consen 277 GGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQD 356 (644)
T ss_pred cccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCcC
Confidence 3466677754 45788888653 33333332 22333322210 11222222223333 344455667
Q ss_pred cEEEEECCCCceeEEeecCCCEEEEEEeCCCCE-------EEEEeCCCcEEEEEEeCCCC-eEeeeceeecccccccccC
Q 001621 99 EIQVWSLESRSLACCLKWESNITAFSVISGSHF-------MYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAG 170 (1043)
Q Consensus 99 ~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~-------l~vG~~dG~v~v~~~d~~~~-~l~~~~~~i~~~~~~~~~~ 170 (1043)
.|.--|+++|+.+.++..+..|+-+.+.|+.+. -++|.++..|.-|+...... ++.. .-. +.
T Consensus 357 ~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~---~q~-----kq-- 426 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV---VQS-----KQ-- 426 (644)
T ss_pred cceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee---eec-----cc--
Confidence 899999999999999999988999999988653 36788888664444332211 1110 000 00
Q ss_pred CCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEE-EEeCCcccccccccccCCCCCCCCcccCccCCCCCC
Q 001621 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1043)
Q Consensus 171 ~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (1043)
+. ......|.+-.- +|. +++|+.+|-|+|||- .++.. ..+.+ - .
T Consensus 427 y~--~k~nFsc~aTT~--sG~-IvvgS~~GdIRLYdr-i~~~AKTAlPg-------------------L----------G 471 (644)
T KOG2395|consen 427 YS--TKNNFSCFATTE--SGY-IVVGSLKGDIRLYDR-IGRRAKTALPG-------------------L----------G 471 (644)
T ss_pred cc--cccccceeeecC--Cce-EEEeecCCcEEeehh-hhhhhhhcccc-------------------c----------C
Confidence 00 011223333332 574 999999999999996 33221 11111 1 3
Q ss_pred CCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 250 KEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 250 ~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
.+|.-+.-. .+|.+|++.+ +..|.+-++
T Consensus 472 ~~I~hVdvt-adGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 472 DAIKHVDVT-ADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred CceeeEEee-ccCcEEEEec-ccEEEEEEE
Confidence 456666664 7898887554 566666665
No 400
>PHA02713 hypothetical protein; Provisional
Probab=85.57 E-value=62 Score=39.68 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=19.8
Q ss_pred CCCcEEEEEeCCC-----eEEEEEcCCceEEE
Q 001621 613 SSGAKLAVGFECG-----RVAVLDMNLLSVLF 639 (1043)
Q Consensus 613 ~dg~~lA~Gs~dg-----~V~vwD~~~~~~l~ 639 (1043)
-+|+..|+|+.++ +|..||..+.++..
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 3678888888765 37889988776643
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.96 E-value=63 Score=35.15 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=103.7
Q ss_pred ccCccceeeecccCCCC--eEEEEEcCCCCEEEEEEcCC--cEEEEcCCCceEE--EecCCCCCeEEEEEecCCCEEEEE
Q 001621 21 AADLNLRIAVHYGIPAT--ASILAFDHIQRLLAIATLDG--RIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISI 94 (1043)
Q Consensus 21 ~~~~~~~~~~~~G~~~~--v~~lafsp~g~lLAvgt~dG--~I~v~~~~~~~~~--~~~~~~~~V~~l~Fs~d~~~Lvs~ 94 (1043)
+..+.+++...|.|... .-.|.|..++.++-+...-| +|+.++..+.+.. ..++...-=-.|....|. |.-.
T Consensus 28 ~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--l~qL 105 (264)
T PF05096_consen 28 APVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--LYQL 105 (264)
T ss_dssp --EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--EEEE
T ss_pred CceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE--EEEE
Confidence 33557888888887655 45588888888888777777 6888888776554 344444333345555553 5555
Q ss_pred E-CCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCC
Q 001621 95 T-NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1043)
Q Consensus 95 s-~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1043)
. .++...+||..+-+.+.++..++.=+.++ .+++.|+..+ |+=+++.+|+..-+... ...+..+ .
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD--GS~~L~~~dP~~f~~~~-~i~V~~~---------g 171 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD--GSSRLYFLDPETFKEVR-TIQVTDN---------G 171 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE---SSSEEEEE-TTT-SEEE-EEE-EET---------T
T ss_pred EecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC--CccceEEECCcccceEE-EEEEEEC---------C
Confidence 5 57889999999999999998877667777 4666777654 44455666664322221 0111100 0
Q ss_pred CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeC
Q 001621 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1043)
Q Consensus 174 ~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~ 217 (1043)
.....+.-|.|- +|...+=......|..-|..+|+++..+.
T Consensus 172 ~pv~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 172 RPVSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp EE---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred EECCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 012234555665 36544445667788888999999887653
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.96 E-value=4 Score=43.35 Aligned_cols=67 Identities=25% Similarity=0.262 Sum_probs=47.0
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe---------------ecCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 001621 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---------------KWESNITAFSVISGSHFMYIGDENGLMS 142 (1043)
Q Consensus 78 ~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~---------------~~~~~Vtav~~sp~~~~l~vG~~dG~v~ 142 (1043)
++..+ ..++.+|++.+.+|.+.+||+.+++.+..- .....|+.+.++.+|.-+ +..++|...
T Consensus 14 ~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~lsng~~y 90 (219)
T PF07569_consen 14 PVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLSNGDSY 90 (219)
T ss_pred ceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEeCCCEE
Confidence 44444 345688999999999999999998865332 123578888888777654 456678765
Q ss_pred EEEEe
Q 001621 143 VIKYD 147 (1043)
Q Consensus 143 v~~~d 147 (1043)
+|+.+
T Consensus 91 ~y~~~ 95 (219)
T PF07569_consen 91 SYSPD 95 (219)
T ss_pred Eeccc
Confidence 55544
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.93 E-value=18 Score=45.37 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCC---CCeEee-------eceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDAD---EGKLFQ-------LPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 118 ~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~---~~~l~~-------~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
-.|..+.++|+|.++++.+..| |.|..+... .+.+.. ..+.+. .. .+.......|..+.|||.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-----~~-~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-----ER-FFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-----hh-hccCCCCceEEEEEEcCC
Confidence 4689999999999999988877 556665421 011100 001111 11 112234568999999996
Q ss_pred C-CCCEEEEEECCCeEEEEEccCC
Q 001621 188 S-SGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 188 d-~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
. .+..|++-..|+++++||+...
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCC
Confidence 3 2356899999999999999753
No 404
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.90 E-value=22 Score=37.29 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=70.3
Q ss_pred eCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC---c---cEEEEE-ecCCCccc-c
Q 001621 502 YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---G---LVYIYN-LNGSLDAK-N 573 (1043)
Q Consensus 502 ~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d---G---~V~i~~-~~~~~~~~-~ 573 (1043)
..-+.|.+||+......+++.+.+- +.|..|+++..|.+|++==.+ . .||+|- |....... .
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv----------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTV----------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcch----------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 3457899999996666677766431 479999999999999975222 2 678873 33221110 0
Q ss_pred eeeeccCCCceeeecCC-CcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceE
Q 001621 574 FLFVLETKSEVHALPEG-KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1043)
Q Consensus 574 ~~f~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~ 637 (1043)
...+-.+. .+..-... ..-+.-.+=.+...+++|++++|...-|++|+.+. +.+|-++....
T Consensus 105 v~vRiaG~-~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~-l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGH-RVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK-LVLFTLKYQTI 167 (215)
T ss_pred EEEEEccc-ccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE-EEEEEEEEEEE
Confidence 00000000 00000000 00011111123467899999999766788988765 78888865433
No 405
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.61 E-value=54 Score=37.15 Aligned_cols=115 Identities=14% Similarity=0.166 Sum_probs=72.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCc------EEEEcCCC-------ceEE--Eec--CCCC-------CeEEEEEecCCCE
Q 001621 35 PATASILAFDHIQRLLAIATLDGR------IKVIGGDG-------IEGL--LIS--PSQL-------PYKNLEFLQNQGF 90 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~------I~v~~~~~-------~~~~--~~~--~~~~-------~V~~l~Fs~d~~~ 90 (1043)
-+..+.|+|+|++..+++-+.+|. ++.+.... .+.. ..+ +... -.-.|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356899999976555555567777 65554322 1111 111 1111 2347788778777
Q ss_pred EEEEECC------CcEEEEECCCCceeEEee----------------cCCCEEEEEEeCCCCEEEEEeCCC-------c-
Q 001621 91 LISITND------NEIQVWSLESRSLACCLK----------------WESNITAFSVISGSHFMYIGDENG-------L- 140 (1043)
Q Consensus 91 Lvs~s~d------~~I~vWdl~t~~~l~~~~----------------~~~~Vtav~~sp~~~~l~vG~~dG-------~- 140 (1043)
+++.=.+ ..|..+|.. |+.+..+. .....-+++++|+|..|++..+.. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788888877 66654442 123578999999999888877654 1
Q ss_pred ------EEEEEEeCCC
Q 001621 141 ------MSVIKYDADE 150 (1043)
Q Consensus 141 ------v~v~~~d~~~ 150 (1043)
++++.++...
T Consensus 178 ~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKT 193 (326)
T ss_pred cccCceEEEEEecCCC
Confidence 6777777643
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.95 E-value=2.8 Score=31.81 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCeEEEEEecCCC---eEEEEecCccEEEEEecC
Q 001621 537 APVSTLSFCFINS---SLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 537 ~~V~~l~fspd~~---~La~g~~dG~V~i~~~~~ 567 (1043)
++|.++.|||+.. +||.+-..|.|.|+|...
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3789999998655 889999999999999975
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.90 E-value=6.1 Score=48.36 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=46.7
Q ss_pred CCCCEEEEEEcCCcEEEEcCCC-----ceEE---Eec-----------C--------CCCCeEEEEEec----CCCEEEE
Q 001621 45 HIQRLLAIATLDGRIKVIGGDG-----IEGL---LIS-----------P--------SQLPYKNLEFLQ----NQGFLIS 93 (1043)
Q Consensus 45 p~g~lLAvgt~dG~I~v~~~~~-----~~~~---~~~-----------~--------~~~~V~~l~Fs~----d~~~Lvs 93 (1043)
++...++++..||.+-.+.... .... +.. + ....+..+.... +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4777899999999988876432 1111 000 0 012345555555 6789999
Q ss_pred EECCCcEEEEECCCCceeEEeecC
Q 001621 94 ITNDNEIQVWSLESRSLACCLKWE 117 (1043)
Q Consensus 94 ~s~d~~I~vWdl~t~~~l~~~~~~ 117 (1043)
.+.|+++++||+.+++++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999998876543
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.74 E-value=12 Score=45.83 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=67.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEe--cCCCeEEEEecCccEEEEEecCCCcc
Q 001621 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC--FINSSLAVGNEFGLVYIYNLNGSLDA 571 (1043)
Q Consensus 494 ~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fs--pd~~~La~g~~dG~V~i~~~~~~~~~ 571 (1043)
.+.+.+.-+.-.++.|||...+.++-...+ ....+|..+.|. ||+..+++-+-...|.+|.-......
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF----------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee----------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444444344799999998874432222 223579999876 78887777777788999875432111
Q ss_pred cceeeeccCCCceeeecCCCcceeeEEecCCC-CCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 572 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
...|.-. +.....+..|+ .+|.+..|-++|. |++|+.+. +.|+|-
T Consensus 110 ------~~~p~w~--------~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNq-lfv~dk 155 (631)
T PF12234_consen 110 ------NKGPSWA--------PIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQ-LFVFDK 155 (631)
T ss_pred ------cCCcccc--------eeEEEEeecCCCCCccceeEecCCe-EEEEeCCE-EEEECC
Confidence 0000000 00011134454 6899999999995 66777554 777775
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.63 E-value=1.2e+02 Score=36.77 Aligned_cols=212 Identities=16% Similarity=0.145 Sum_probs=111.9
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCC--CeE----------EEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYK----------NLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~--~V~----------~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
+..|.+++.+|.|+-+|....+.+....... .+. .+... ++.++.++.|+.|.-.|.+||+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5677788888999989988887776654321 111 12222 246788888999999999999988765
Q ss_pred ecCC-----CEEEEEEeCCCCEEEEEeC------CCcEEEEEEeCCCCeEeeeceeeccccc------ccccCCC-----
Q 001621 115 KWES-----NITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLPYNISADAL------SEKAGFP----- 172 (1043)
Q Consensus 115 ~~~~-----~Vtav~~sp~~~~l~vG~~------dG~v~v~~~d~~~~~l~~~~~~i~~~~~------~~~~~~~----- 172 (1043)
.... .+++--+. .+..+++|.. +|. |+.+|.+.+++...-+.++.... ....+.+
T Consensus 147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~--v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGY--VTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEE-ECCEEEEeecccccCCCcE--EEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 4321 12211111 1346667654 454 45566666665521112221100 0000000
Q ss_pred -----CCCCCCe-EEEEecCCCCCCEEEEEECC-----C-----------eEEEEEccCCeEEEEeCCcccccccccccC
Q 001621 173 -----LLSHQPV-VGVLPHPNSSGNRVLIAYEN-----A-----------LVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1043)
Q Consensus 173 -----~~~~~~V-~sl~~sp~d~g~~ll~~~~d-----g-----------~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1043)
......+ ..+++.|. .+ ++.++..+ + .|.--|+++|+..-++.. .+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~-~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~--------~~-- 291 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPE-TN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT--------TP-- 291 (527)
T ss_pred CCCccccCCCCccCceeEcCC-CC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC--------CC--
Confidence 0001122 23455553 23 35554422 1 567778888888776643 00
Q ss_pred CCCCCCCcccCccCCCCCCCCeEEEEEecCCCC---EEEEEEcCCcEEEEcCCCCCccc
Q 001621 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGS---ILAVGYIDGDILLWNTSTTASTK 286 (1043)
Q Consensus 231 ~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~---~l~tg~~DG~I~iWd~~tg~~~~ 286 (1043)
.|.-..+......+..+ . .+|+ .++.+..+|.+.+.|..+|+.+.
T Consensus 292 --------~D~wD~d~~~~p~l~d~--~-~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 292 --------HDEWDYDGVNEMILFDL--K-KDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred --------CCCccccCCCCcEEEEe--c-cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 00000000001122222 1 4665 67789999999999999987653
No 410
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.37 E-value=17 Score=38.11 Aligned_cols=117 Identities=16% Similarity=0.320 Sum_probs=70.5
Q ss_pred CEEEEEECCCcEEEEECCC--CceeEEeecCCCEEEEEEeCCCCEEEEEeCCC------cEEEE-EEeCC--CCeEeeec
Q 001621 89 GFLISITNDNEIQVWSLES--RSLACCLKWESNITAFSVISGSHFMYIGDENG------LMSVI-KYDAD--EGKLFQLP 157 (1043)
Q Consensus 89 ~~Lvs~s~d~~I~vWdl~t--~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG------~v~v~-~~d~~--~~~l~~~~ 157 (1043)
..|+.+...+.|.+|++.+ .+++.++..-+.|..+..+..|+|+++==++. .+|++ +|... ..... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v--~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV--R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE--E
Confidence 5576667888999999983 45677777779999999999999998743321 34543 22221 11111 0
Q ss_pred eeeccccc-----------ccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeE
Q 001621 158 YNISADAL-----------SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1043)
Q Consensus 158 ~~i~~~~~-----------~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~ 212 (1043)
-++.+... -+.+..| -..++.+++-.|. .|+ |++|+++ .+.||.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElP--l~~~p~ciaCC~~-tG~-LlVg~~~-~l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELP--LSEPPLCIACCPV-TGN-LLVGCGN-KLVLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEec--CCCCCCEEEecCC-CCC-EEEEcCC-EEEEEEEEEEEE
Confidence 11111000 0111122 2456788888887 587 7887655 668998865443
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.91 E-value=27 Score=40.28 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------cCC-cEEEEcCC---Cc--eEEEecCCCCCeEEEEEecCCCEEEEEECCC
Q 001621 36 ATASILAFDHIQRLLAIAT-----------LDG-RIKVIGGD---GI--EGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1043)
Q Consensus 36 ~~v~~lafsp~g~lLAvgt-----------~dG-~I~v~~~~---~~--~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~ 98 (1043)
..+..++|+++|+++++-. ..| +|.++.-. +. +.......-.....|+|.+++ |+.++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5688999999999887643 234 88887532 21 111112222345778899886 55555444
Q ss_pred cEEEEECCC-------Ccee-EEeec-----CCCEEEEEEeCCCCE
Q 001621 99 EIQVWSLES-------RSLA-CCLKW-----ESNITAFSVISGSHF 131 (1043)
Q Consensus 99 ~I~vWdl~t-------~~~l-~~~~~-----~~~Vtav~~sp~~~~ 131 (1043)
..++.|... .+.+ ..+.. +.....+++.|+|.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 333445532 1122 22322 234778999999854
No 412
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.00 E-value=83 Score=36.71 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEE-EcCCCce-EEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCc-----
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKV-IGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----- 109 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v-~~~~~~~-~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~----- 109 (1043)
....+..+++|.++++|. .|.+.. |+..... .....+....+..+.|.+++..++ ++..|.+ +|....++
T Consensus 240 sf~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l-~g~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWL-LTRGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred ceeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEE-EeCCceE-EEecCCCCccccc
Confidence 345566788888888885 455544 4433221 123444566789999999866554 5566664 55555554
Q ss_pred eeEEeecC---CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 110 LACCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 110 ~l~~~~~~---~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
........ ..++++.+.+++..+++| ..|.+.. . .+.++- |... .. ...-......+.|.+
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~--s-~D~G~t----W~~~-----~~---~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLR--S-TDGGKS----WKRD-----KG---ADNIAANLYSVKFFD 380 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEE--e-CCCCcc----eeEc-----cc---cCCCCcceeEEEEcC
Confidence 23333322 358899999887766655 5675532 2 222221 1110 00 011134567888876
Q ss_pred CCCCCEEEEEECCCeEEEE
Q 001621 187 NSSGNRVLIAYENALVILW 205 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lW 205 (1043)
. ++ ..+.+.+|.|.-|
T Consensus 381 ~--~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 381 D--KK-GFVLGNDGVLLRY 396 (398)
T ss_pred C--Cc-eEEEeCCcEEEEe
Confidence 3 43 7777888887554
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=80.23 E-value=77 Score=36.05 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCcEEEE-cCCCceEE-EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 001621 35 PATASILAFDHIQRLLAIATLDGRIKVI-GGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1043)
Q Consensus 35 ~~~v~~lafsp~g~lLAvgt~dG~I~v~-~~~~~~~~-~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~ 112 (1043)
.+.+.+++++|++.++++|. .|.+..- +..+.... ...+....+..+.+.+++. ++.++..|.+++=..+.+.--.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecCCEEEEccCCCCCccc
Confidence 45678899999988887774 5666542 22222222 2233456889999999865 4555666766432344443322
Q ss_pred EeecC-----CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 113 CLKWE-----SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 113 ~~~~~-----~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
....+ ..+.++.+.+++..+++| .+|.+. .. .+.++- |... . .+..-......+.|...
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S--~d~G~t----W~~~-----~---~~~~~~~~~~~~~~~~~ 313 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VS--KDGGKT----WEKD-----P---VGEEVPSNFYKIVFLDP 313 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-Ee--CCCCCC----CeEC-----C---cCCCCCcceEEEEEeCC
Confidence 22222 357888999887765555 567542 22 222211 1110 0 00011234666666642
Q ss_pred CCCCEEEEEECCCeEEEEE
Q 001621 188 SSGNRVLIAYENALVILWD 206 (1043)
Q Consensus 188 d~g~~ll~~~~dg~I~lWd 206 (1043)
++ .++++..|.|.-|+
T Consensus 314 --~~-~~~~G~~G~il~~~ 329 (334)
T PRK13684 314 --EK-GFVLGQRGVLLRYV 329 (334)
T ss_pred --Cc-eEEECCCceEEEec
Confidence 43 67777888886665
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=79.66 E-value=1.5e+02 Score=35.75 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred EEeeeecceeEEEEEEEee-CcEEEEeCC--ChhhhhhhcccceeeeeccCCCceeeEec-CCcEEEEcc
Q 001621 755 ASTIEKDEKVCGLLLLFQT-GAVQIRSLP--DLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG 820 (1043)
Q Consensus 755 ~~~~~~~~~~~~Lv~~~~d-G~i~i~slp--~l~~~~~~~l~~~~~~~~~~~~~~~i~~s-dg~~~l~~g 820 (1043)
..++.++++...++.++.+ ..|-||++- .|.-+.+.+|.+ ..--|-|||= |.-.++..|
T Consensus 341 PDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~-------~ERPKGiCFltdklLLilVG 403 (671)
T PF15390_consen 341 PDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLES-------NERPKGICFLTDKLLLILVG 403 (671)
T ss_pred cceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEccc-------CCCCceeeEccCCeEEEEec
Confidence 3445556777777777654 677999993 455566666554 2234669997 888888888
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.42 E-value=59 Score=36.32 Aligned_cols=151 Identities=11% Similarity=0.019 Sum_probs=74.4
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 490 ~~s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
..++++++++.+..-....-||-....-.+... ..+..|.+|.|+|++.+..++ ..|.|+.=+.....
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEcc-----------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 356888888877655556789876544222211 223579999999997765544 88888776622110
Q ss_pred cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCC
Q 001621 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1043)
Q Consensus 570 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~ 649 (1043)
. .+.. .......-.-.+..|+|.+++...|+|+... + +.....++-=.+.......++
T Consensus 219 ~---------------~w~~-----~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 219 E---------------TWSE-----PIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGGKTWQKDRVGENVPS 276 (302)
T ss_dssp E---------------EE--------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS
T ss_pred c---------------cccc-----ccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCCccceECccccCCCC
Confidence 0 0000 0000111222488999999998777666553 3 344444432222222223456
Q ss_pred CeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEE
Q 001621 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1043)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~ 697 (1043)
-...+.|... .--++..++|.|.-|
T Consensus 277 n~~~i~f~~~-----------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 277 NLYRIVFVNP-----------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEEEET-----------------------TEEEEE-STTEEEEE
T ss_pred ceEEEEEcCC-----------------------CceEEECCCcEEEEe
Confidence 7889999632 126778888888765
No 416
>PHA02713 hypothetical protein; Provisional
Probab=79.04 E-value=17 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=18.8
Q ss_pred CCCCcEEEEEeCCC-----cEEEEeCCCCC
Q 001621 492 HSVDRVYLAGYHDG-----SVRIWDATYPV 516 (1043)
Q Consensus 492 s~~~~~l~tg~~Dg-----tVriWD~~~~~ 516 (1043)
.-++.+++.||.++ +|..||..+..
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 34678999999775 47888887765
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.99 E-value=92 Score=37.41 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCEEEEEE--cCCcEEEEcCCCceEEEecCCCCCeEEEEEec----CCCEEEEEECCCcEEEEECC----
Q 001621 37 TASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLE---- 106 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt--~dG~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~----d~~~Lvs~s~d~~I~vWdl~---- 106 (1043)
.+.-+||.-..+++.+.- .+|.++.= +...+.+++ -|..+.|.| +-..|+++.-+..|.||-+.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 455677753333333322 23444321 122333443 388888987 34579999999999999985
Q ss_pred -CCceeEEe----e--cCCCEEEEEEeCCCCEEEEEeCCCcEEE-EEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 107 -SRSLACCL----K--WESNITAFSVISGSHFMYIGDENGLMSV-IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 107 -t~~~l~~~----~--~~~~Vtav~~sp~~~~l~vG~~dG~v~v-~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
+.+++.+. . ++---..+.+.|....|++=+... +.| .++..+..+.. . .....+.
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVk-------a---------Di~~~G~ 157 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVK-------A---------DIKTSGL 157 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEE-------E---------eccCCce
Confidence 33444322 1 111123456778777776544433 222 22222221111 0 1123578
Q ss_pred eEEEEecCCCCCCEEEEEECCC-eEEEEEccC
Q 001621 179 VVGVLPHPNSSGNRVLIAYENA-LVILWDVSE 209 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~dg-~I~lWd~~~ 209 (1043)
|.|-+|.+ ||+||+++-... .-.+||-..
T Consensus 158 IhCACWT~--DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 158 IHCACWTK--DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEecC--cCCEEEEEeCCeEEEEEecCch
Confidence 99999999 588887765543 456888543
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.28 E-value=14 Score=39.22 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.0
Q ss_pred EcCCCCEEEEEEcCCcEEEEcCCCceEEEec---------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001621 43 FDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---------------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 43 fsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~---------------~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
+...+++|.+-|.+|.+++||......++.. .....|+.+.+..+|.-||+.+ +|....||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 5667889999999999999999887765433 1223455555555544344333 3445555543
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.70 E-value=1.2e+02 Score=33.61 Aligned_cols=118 Identities=16% Similarity=0.291 Sum_probs=70.2
Q ss_pred ccCccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC-----Cc--eEEEecC------CCCCeEEEEEecC
Q 001621 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-----GI--EGLLISP------SQLPYKNLEFLQN 87 (1043)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~-----~~--~~~~~~~------~~~~V~~l~Fs~d 87 (1043)
+...|+.+.+-.| ++|+|.+.+-++....|...+||.. .. ..+...+ .....+.+.|...
T Consensus 15 A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~ 87 (336)
T TIGR03118 15 AQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS 87 (336)
T ss_pred ccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC
Confidence 4555666665443 6899999888888888999999986 22 2233333 1235666766643
Q ss_pred CCE------------EEEEECCCcEEEEECCCCce-----eEEee--cCCCEE---EEEEeCCCCEEEEEe-CCCcEEEE
Q 001621 88 QGF------------LISITNDNEIQVWSLESRSL-----ACCLK--WESNIT---AFSVISGSHFMYIGD-ENGLMSVI 144 (1043)
Q Consensus 88 ~~~------------Lvs~s~d~~I~vWdl~t~~~-----l~~~~--~~~~Vt---av~~sp~~~~l~vG~-~dG~v~v~ 144 (1043)
..+ .+.+++||+|.=|.-.-... ...+. ..+.|. +++....+++||.+. .+|.|.|+
T Consensus 88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 333 56778899999998432211 11111 113332 334344567777664 46777776
Q ss_pred E
Q 001621 145 K 145 (1043)
Q Consensus 145 ~ 145 (1043)
+
T Consensus 168 d 168 (336)
T TIGR03118 168 K 168 (336)
T ss_pred c
Confidence 4
No 420
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.42 E-value=28 Score=40.80 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=65.3
Q ss_pred ccCCCCcEEEEE-eCCC----cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCc------
Q 001621 490 KCHSVDRVYLAG-YHDG----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG------ 558 (1043)
Q Consensus 490 ~~s~~~~~l~tg-~~Dg----tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG------ 558 (1043)
.++|+++++|-+ +..| ++++.|+.++....- .+ .. ..-..+.|.+|++.|.....+.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i----~~-------~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI----EN-------PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE----EE-------EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc----cc-------cccceEEEeCCCCEEEEEEeCccccccc
Confidence 578999877744 4444 599999999862211 11 10 0123499999988876554332
Q ss_pred -----cEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCC--EEEEEEcCCCcEEEEEeCCC----eE
Q 001621 559 -----LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP--VRALQFTSSGAKLAVGFECG----RV 627 (1043)
Q Consensus 559 -----~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--Vt~la~s~dg~~lA~Gs~dg----~V 627 (1043)
.|+.|++.+...... .++.....+ ...+..|+||++|.+.+..+ .|
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~-----------------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDE-----------------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-E-----------------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred CCCCcEEEEEECCCChHhCe-----------------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 266666655432211 223333332 56788999999988755433 37
Q ss_pred EEEEcCCc
Q 001621 628 AVLDMNLL 635 (1043)
Q Consensus 628 ~vwD~~~~ 635 (1043)
.+.|+..+
T Consensus 255 ~~~d~~~~ 262 (414)
T PF02897_consen 255 YLLDLDDG 262 (414)
T ss_dssp EEEECCCT
T ss_pred EEEecccc
Confidence 88888753
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.36 E-value=29 Score=40.57 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=67.3
Q ss_pred EEEEECCCcEEEEECCCCcee-EEeecC----------------------CCEEEEEEeCCCCEEEEEeCCCcEEEEEEe
Q 001621 91 LISITNDNEIQVWSLESRSLA-CCLKWE----------------------SNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1043)
Q Consensus 91 Lvs~s~d~~I~vWdl~t~~~l-~~~~~~----------------------~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d 147 (1043)
++.+..| .+..||-+.-.++ ..++.+ =.|.-+..++.|..++..+.+|.+ |..+.
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~-vMeLp 132 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLM-VMELP 132 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeE-EEEch
Confidence 5555555 8888987654432 222211 136677788999999999999954 43331
Q ss_pred C--------CCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCC--CCCEEEEEECCCeEEEEEccCCeEE
Q 001621 148 A--------DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS--SGNRVLIAYENALVILWDVSEAQII 213 (1043)
Q Consensus 148 ~--------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d--~g~~ll~~~~dg~I~lWd~~~~~~~ 213 (1043)
- ++++... ..+... +...+. .....-.+..++|||.. |.+ |++-..|.+|++||+.+..-+
T Consensus 133 ~rwG~~s~~eDgk~~v-~CRt~~--i~~~~f-tss~~ltl~Qa~WHP~S~~D~h-L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTV-NCRTTP--VAERFF-TSSTSLTLKQAAWHPSSILDPH-LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred hhcCccceecCCCceE-EEEeec--ccceee-ccCCceeeeeccccCCccCCce-EEEEecCcEEEEEecCCcchh
Confidence 1 1111110 011100 111111 11233457788999976 554 888889999999999876654
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.75 E-value=17 Score=46.32 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCEEEEEEc-CC-cEEEEcCCCceEE-----E--e-----cCCCCCeEEEEEecCCCE-EEEEECCCcEEE
Q 001621 38 ASILAFDHIQRLLAIATL-DG-RIKVIGGDGIEGL-----L--I-----SPSQLPYKNLEFLQNQGF-LISITNDNEIQV 102 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~-dG-~I~v~~~~~~~~~-----~--~-----~~~~~~V~~l~Fs~d~~~-Lvs~s~d~~I~v 102 (1043)
+..++..+|+.++++-.. +| .|+.||....+.- . . .....-..++.|.|.-.. .+++..|..|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 444555667766555433 23 5777887543211 0 0 111234556777775322 344557888888
Q ss_pred EECCCC-ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEE
Q 001621 103 WSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1043)
Q Consensus 103 Wdl~t~-~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1043)
..+... ..+.++.....++|++++|.|..+++|..+|++ ..|...- ... ..|+. .+......|.+
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~--vQy~P~l-eik---~~ip~--------Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTE--VQYEPSL-EIK---SEIPE--------PPVEENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeE--EEeeccc-cee---ecccC--------CCcCCCcceeE
Confidence 876543 334445566789999999999999999999986 3443311 100 11221 11122568999
Q ss_pred EEecCCCCCCEEEEEECCCe
Q 001621 182 VLPHPNSSGNRVLIAYENAL 201 (1043)
Q Consensus 182 l~~sp~d~g~~ll~~~~dg~ 201 (1043)
|+|--. .-+++.|..++
T Consensus 249 v~Wl~t---~eflvvy~n~t 265 (1405)
T KOG3630|consen 249 VTWLST---QEFLVVYGNVT 265 (1405)
T ss_pred EEEecc---eeEEEEecccc
Confidence 999652 23677777765
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=75.69 E-value=41 Score=40.89 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=28.9
Q ss_pred ccCCCCeEEEEEcCCCC---EEEEEEcCCcEEEEcCCCceEE
Q 001621 32 YGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGL 70 (1043)
Q Consensus 32 ~G~~~~v~~lafsp~g~---lLAvgt~dG~I~v~~~~~~~~~ 70 (1043)
|..+.....+.+..+|+ +++.++.+|.++++|..+.+.+
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 34444455555556776 8999999999999999877765
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=75.55 E-value=71 Score=37.17 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcC------CcEEEEcCCCceEEEecCC--CC--CeEEEEEecCCCEEEEEEC-------
Q 001621 34 IPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPS--QL--PYKNLEFLQNQGFLISITN------- 96 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~d------G~I~v~~~~~~~~~~~~~~--~~--~V~~l~Fs~d~~~Lvs~s~------- 96 (1043)
.|.++.|+ |+|+++.++-.| |.+.++|.++.+....-+. .. ---.+.+.|....++|...
T Consensus 131 ~PHT~Hcl---p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~ 207 (461)
T PF05694_consen 131 RPHTVHCL---PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFE 207 (461)
T ss_dssp EEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHT
T ss_pred CCceeeec---CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcc
Confidence 34455554 588877775332 6788888877666543332 11 1224455666666777642
Q ss_pred -------------CCcEEEEECCCCceeEEeecC---CCEEEEEE--eCCCCEEEEEeCCCcEEEEEEeC-CCCeEee-e
Q 001621 97 -------------DNEIQVWSLESRSLACCLKWE---SNITAFSV--ISGSHFMYIGDENGLMSVIKYDA-DEGKLFQ-L 156 (1043)
Q Consensus 97 -------------d~~I~vWdl~t~~~l~~~~~~---~~Vtav~~--sp~~~~l~vG~~dG~v~v~~~d~-~~~~l~~-~ 156 (1043)
.+++.+||+.++++++++... ...-.+.| +|+..+-++|+.=+ -.||.+-. +++.-.. .
T Consensus 208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLs-s~i~~~~k~~~g~W~a~k 286 (461)
T PF05694_consen 208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALS-SSIWRFYKDDDGEWAAEK 286 (461)
T ss_dssp T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEE
T ss_pred cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEecc-ceEEEEEEcCCCCeeeeE
Confidence 467999999999999999754 23344555 46677888887633 24555432 2222110 0
Q ss_pred ceeeccc----c-cccccCCCCCCCCCeEEEEecCCCCCCEE-EEEECCCeEEEEEccCC
Q 001621 157 PYNISAD----A-LSEKAGFPLLSHQPVVGVLPHPNSSGNRV-LIAYENALVILWDVSEA 210 (1043)
Q Consensus 157 ~~~i~~~----~-~~~~~~~~~~~~~~V~sl~~sp~d~g~~l-l~~~~dg~I~lWd~~~~ 210 (1043)
-..|+.. + +-+.+.-...-..-|+.|..|.+ .++| ++...+|.|+.||+...
T Consensus 287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD--DrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD--DRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEE--EE--SS---GGGGGG-EE------EEE-TT--S-EEEEEETTTTEEEEEE-SST
T ss_pred EEECCCcccCcccccccccccccCCCceEeEEEccC--CCEEEEEcccCCcEEEEecCCC
Confidence 0122211 0 00000000001234788999986 3444 45567999999999874
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.93 E-value=35 Score=35.98 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=62.9
Q ss_pred EEEEEcCCCCEEE-EEEcCCcEEEEc--CCCc-----eEEEecCCC----CC-eEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 39 SILAFDHIQRLLA-IATLDGRIKVIG--GDGI-----EGLLISPSQ----LP-YKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 39 ~~lafsp~g~lLA-vgt~dG~I~v~~--~~~~-----~~~~~~~~~----~~-V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
+.|+||.+++.+. +-+.+-+|.-|| .+++ ..++.+... .. --.++...+|...+++=..++|+..|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 5678888876544 455566776676 3222 222222210 00 011222445556677778899999999
Q ss_pred CCCceeEEeecC-CCEEEEEEe-CCCCEEEEEeC
Q 001621 106 ESRSLACCLKWE-SNITAFSVI-SGSHFMYIGDE 137 (1043)
Q Consensus 106 ~t~~~l~~~~~~-~~Vtav~~s-p~~~~l~vG~~ 137 (1043)
.+|+.+.++..+ .+|++++|- ++.+.||+.+.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 999999999877 789999985 55567776654
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.75 E-value=38 Score=38.52 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=58.7
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCce--EEEecC-----CCCCeEEEEEecC---CCEEEEEEC-C--------
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISP-----SQLPYKNLEFLQN---QGFLISITN-D-------- 97 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~--~~~~~~-----~~~~V~~l~Fs~d---~~~Lvs~s~-d-------- 97 (1043)
....++|.|+|++++ +...|+|++++.++.. .+...+ .......++|.|+ .++|..... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478899999998876 5679999999944432 222222 2457889999994 244444433 1
Q ss_pred CcEEEEECCCC--c------eeEEeec----CCCEEEEEEeCCCCEEEEEeCCC
Q 001621 98 NEIQVWSLESR--S------LACCLKW----ESNITAFSVISGSHFMYIGDENG 139 (1043)
Q Consensus 98 ~~I~vWdl~t~--~------~l~~~~~----~~~Vtav~~sp~~~~l~vG~~dG 139 (1043)
+.|.-|.+..+ . ++..+.. ...-..++|.|++ +||++..++
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence 35666666544 1 1112222 2456779999999 666655554
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.08 E-value=16 Score=42.48 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=53.0
Q ss_pred ecccCCC---CeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEEecCC--CCCeEEEEEecC-----------------
Q 001621 30 VHYGIPA---TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS--QLPYKNLEFLQN----------------- 87 (1043)
Q Consensus 30 ~~~G~~~---~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~--~~~V~~l~Fs~d----------------- 87 (1043)
.+++++. .+..++.+|.+++.|+...=|+|.|+|..+...+....+ .+.+.-+.-..+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 3445443 488999999999888876669999999876554432221 111211111111
Q ss_pred CCEEEE-EECCCcEEEEECCCCceeEEee
Q 001621 88 QGFLIS-ITNDNEIQVWSLESRSLACCLK 115 (1043)
Q Consensus 88 ~~~Lvs-~s~d~~I~vWdl~t~~~l~~~~ 115 (1043)
..+|+. +-..|.|.||++++|..+..+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 012333 3457899999999998776654
No 428
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.61 E-value=85 Score=37.67 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=71.5
Q ss_pred cCCcEEEEcCCCceEE-EecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCCCE----EEEEEeCCC
Q 001621 55 LDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI----TAFSVISGS 129 (1043)
Q Consensus 55 ~dG~I~v~~~~~~~~~-~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~V----tav~~sp~~ 129 (1043)
..+.+.++|..+.-+- +.... .....+.+.+||.+|+... +.+...|+. |+.+..+..++.- ..+...|+|
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~-~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDS-GSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGG-T--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCCccEEEEEccCc-cccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 4456666776554322 22211 1111166778865554443 889999985 6666666544322 456778999
Q ss_pred CEEEEEeC--------------CCcEEEEEEeCCCCeEeeeceeecccccc--cc-------cC-----CCCCCCCCeEE
Q 001621 130 HFMYIGDE--------------NGLMSVIKYDADEGKLFQLPYNISADALS--EK-------AG-----FPLLSHQPVVG 181 (1043)
Q Consensus 130 ~~l~vG~~--------------dG~v~v~~~d~~~~~l~~~~~~i~~~~~~--~~-------~~-----~~~~~~~~V~s 181 (1043)
++|+.+.. |. |..++ ..++... .|.... .+. .. .. ....+=-.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~---Ivevd-~tG~vv~-~wd~~d-~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV---IVEVD-PTGEVVW-EWDFFD-HLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E---EEEE--TTS-EEE-EEEGGG-TS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred CEEEEEeecccccCCCCccEecCE---EEEEC-CCCCEEE-EEehHH-hCCcccccccccccccccccCCCCCCccccCc
Confidence 99888872 22 23344 3344331 111110 000 00 00 01112236899
Q ss_pred EEecCCCCCCEEEEEECCC-eEEEEEccCCeEEEEeCC
Q 001621 182 VLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGG 218 (1043)
Q Consensus 182 l~~sp~d~g~~ll~~~~dg-~I~lWd~~~~~~~~~~~~ 218 (1043)
+.+.|.+ + .|+++++.. .|...|.+++++...++.
T Consensus 276 i~yd~~d-d-~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 276 IDYDPSD-D-SIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EEEETTT-T-EEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cEEeCCC-C-eEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 9999963 4 377777765 888888889998877764
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.08 E-value=2.5 Score=51.84 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=47.7
Q ss_pred CeEEEEEec---CCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEE----
Q 001621 538 PVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---- 610 (1043)
Q Consensus 538 ~V~~l~fsp---d~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la---- 610 (1043)
++.-|.|+| +..++..+..+|+|++..+.+.... .| ..|...++.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~---l~-----------------------rsHs~~~~d~a~~~~ 235 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS---LF-----------------------RSHSQRVTDMAFFAE 235 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHH---HH-----------------------HhcCCCcccHHHHhh
Confidence 446666665 5678888999999999988763211 11 12222222221
Q ss_pred -------EcCCCcEEEEEeCCCeEEEEEc
Q 001621 611 -------FTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 611 -------~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.||||..+|.+..||.|++|-+
T Consensus 236 g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 236 GVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred chhhheeeCCCCcEEEEeecCCccceeee
Confidence 7999999999999999999986
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.17 E-value=69 Score=37.02 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEcC----CCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCcee--
Q 001621 38 ASILAFDHIQRLLAIATLDGRIKVIGG----DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-- 111 (1043)
Q Consensus 38 v~~lafsp~g~lLAvgt~dG~I~v~~~----~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l-- 111 (1043)
-+.+-||-..++|..- ..|.+.=|-. +.+-.-+....+++|+++.|++|.+.|+.--.+++|.+.+..--+..
T Consensus 25 sngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 4556676655544332 3344444432 22223333445679999999999888888888999999998432221
Q ss_pred --EEeec-CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCC
Q 001621 112 --CCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1043)
Q Consensus 112 --~~~~~-~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~ 187 (1043)
++.+. ...|..+.++...+..++. ..| +.++.++.+.+.+. ..+.+.-.|.--.|.|+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G-~e~y~v~pekrslR----------------lVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFIT-DQG-IEFYQVLPEKRSLR----------------LVKSHNLNVNWYMYCPE 164 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEe-cCC-eEEEEEchhhhhhh----------------hhhhcccCccEEEEccc
Confidence 11122 2458888888775555443 445 67777766543322 11223445666777874
No 431
>PHA03098 kelch-like protein; Provisional
Probab=71.90 E-value=1.5e+02 Score=35.93 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCCCcEEEEEeCCC------cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC-----ccE
Q 001621 492 HSVDRVYLAGYHDG------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF-----GLV 560 (1043)
Q Consensus 492 s~~~~~l~tg~~Dg------tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d-----G~V 560 (1043)
..++.+++.||.++ .+..||..+..-..+..+ ..+......+ .-++...+.|+.+ ..|
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---------~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v 360 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL---------IYPRKNPGVT--VFNNRIYVIGGIYNSISLNTV 360 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC---------CcccccceEE--EECCEEEEEeCCCCCEecceE
Confidence 34567888888654 466777776652211111 1111112222 2367777888865 346
Q ss_pred EEEEecCC
Q 001621 561 YIYNLNGS 568 (1043)
Q Consensus 561 ~i~~~~~~ 568 (1043)
..||+.++
T Consensus 361 ~~yd~~~~ 368 (534)
T PHA03098 361 ESWKPGES 368 (534)
T ss_pred EEEcCCCC
Confidence 66666543
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.53 E-value=1.8e+02 Score=32.83 Aligned_cols=117 Identities=15% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCCEEEEEECCCc------EEEEECCC--C--ce---eE--EeecC-C--------CEEEEEEeCCCCEE
Q 001621 77 LPYKNLEFLQNQGFLISITNDNE------IQVWSLES--R--SL---AC--CLKWE-S--------NITAFSVISGSHFM 132 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s~d~~------I~vWdl~t--~--~~---l~--~~~~~-~--------~Vtav~~sp~~~~l 132 (1043)
..+..|.+.++++.+++++.++. +...++.. + .. .. .+... + ..-++++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45778888876677888888877 66666554 1 11 11 11111 1 23467775555 45
Q ss_pred EEEeCCC-----cEEEEEEeCCCCeEeeeceeecccccccccC-CCCCCCCCeEEEEecCCCCCCEEEEEEC
Q 001621 133 YIGDENG-----LMSVIKYDADEGKLFQLPYNISADALSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYE 198 (1043)
Q Consensus 133 ~vG~~dG-----~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~V~sl~~sp~d~g~~ll~~~~ 198 (1043)
+++++.+ .=+|+.++.+ +++.. .+.+|........+ ..........+|+++|+ |+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~-~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d--G~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIR-RFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD--GRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Ccccc-eEccccccccccCccccccCCCCeEEEEECCC--CCEEEEEEC
Confidence 5666655 0367888866 44321 23344322111000 11234567899999994 776666554
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.45 E-value=17 Score=44.56 Aligned_cols=97 Identities=12% Similarity=-0.088 Sum_probs=49.8
Q ss_pred cCCCeEEEEecCccEEEEEecCCCcccc-eeeec-cCCCceeeecCCCcceeeEEecCCCCCEEEEEEcC----CCcEEE
Q 001621 546 FINSSLAVGNEFGLVYIYNLNGSLDAKN-FLFVL-ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS----SGAKLA 619 (1043)
Q Consensus 546 pd~~~La~g~~dG~V~i~~~~~~~~~~~-~~f~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~----dg~~lA 619 (1043)
++...|+++..||.+...+.......+. ..... ...+....+....... ...-....+.+.+++++. +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT----SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcc-cccCCCCCCccceEEEecceeCCCCEEE
Confidence 4667888889999988888765221110 00000 0000001111000000 000012234566677766 667899
Q ss_pred EEeCCCeEEEEEcCCceEEEEeec
Q 001621 620 VGFECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 620 ~Gs~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
+-+.|+++|+||+.++.++++..+
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEET
T ss_pred EEeCCCeEEEEECCCCeEEEEecc
Confidence 999999999999999999888766
No 434
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.34 E-value=15 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=28.3
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCceeEEeecCCCEEEEEE
Q 001621 86 QNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1043)
Q Consensus 86 ~d~~~Lvs~s-~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~ 125 (1043)
|++++|++++ .++.|.++|+.+++.+..+.....-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4667777766 478999999999998888765433334443
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=70.66 E-value=71 Score=39.27 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=64.1
Q ss_pred CeEEEEEecCCCeEEEEecCccEEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEE--cCCC
Q 001621 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF--TSSG 615 (1043)
Q Consensus 538 ~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~--s~dg 615 (1043)
..+-+.-|.-++..++-...-++.|||.....-+ ....| ...++|..|.| .|||
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE-----------------------~~~~f-~~~~~I~dLDWtst~d~ 86 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE-----------------------YEESF-SEDDPIRDLDWTSTPDG 86 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEE-----------------------Eeeee-cCCCceeeceeeecCCC
Confidence 4455555555555555444557889998754211 01122 45678889987 5677
Q ss_pred cEEEEEeCCCeEEEEEc-------CCc--eEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEE
Q 001621 616 AKLAVGFECGRVAVLDM-------NLL--SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII 686 (1043)
Q Consensus 616 ~~lA~Gs~dg~V~vwD~-------~~~--~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 686 (1043)
+.+.+-+-...|.++-- .+| ..+.+..+.+.++.+|....|-.+| .|+
T Consensus 87 qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-----------------------~Lv 143 (631)
T PF12234_consen 87 QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-----------------------TLV 143 (631)
T ss_pred CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-----------------------eEE
Confidence 76444444555666643 222 2334444444455677777776443 144
Q ss_pred EeccCceEEEEcC
Q 001621 687 VLFKDAKISIVGG 699 (1043)
Q Consensus 687 ~gt~dg~I~~~d~ 699 (1043)
+ +.+..++++|.
T Consensus 144 V-~sGNqlfv~dk 155 (631)
T PF12234_consen 144 V-GSGNQLFVFDK 155 (631)
T ss_pred E-EeCCEEEEECC
Confidence 4 44678888884
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=69.35 E-value=24 Score=35.86 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCCc------EEEEEeCCCeEEEEEcCC
Q 001621 604 SPVRALQFTSSGA------KLAVGFECGRVAVLDMNL 634 (1043)
Q Consensus 604 ~~Vt~la~s~dg~------~lA~Gs~dg~V~vwD~~~ 634 (1043)
..|.+++|||.|- +||+-+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4799999999653 799999999999999763
No 437
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.30 E-value=77 Score=36.44 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=36.2
Q ss_pred EEecCCCEEEEEEC-C--CcEEEEECCCCceeEEeecCCC-EEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeece
Q 001621 83 EFLQNQGFLISITN-D--NEIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1043)
Q Consensus 83 ~Fs~d~~~Lvs~s~-d--~~I~vWdl~t~~~l~~~~~~~~-Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~ 158 (1043)
+|.+||.+|+-++. | ..+.+-||++++..+--..++. .-...++|+.+.++--..+..| +.++.+..+... -|
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l--~~vdL~T~e~~~-vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSL--RRVDLDTLEERV-VY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEE--EEEETTT--EEE-EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeE--EEEECCcCcEEE-EE
Confidence 46778877666654 4 4578889999987665443321 1134556777776543334444 555544333221 26
Q ss_pred eecccc
Q 001621 159 NISADA 164 (1043)
Q Consensus 159 ~i~~~~ 164 (1043)
.++..+
T Consensus 119 ~~p~~~ 124 (386)
T PF14583_consen 119 EVPDDW 124 (386)
T ss_dssp E--TTE
T ss_pred ECCccc
Confidence 766443
No 438
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=67.93 E-value=21 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCcEEEEEe-CCCeEEEEEcCCceEEEEeec
Q 001621 613 SSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 613 ~dg~~lA~Gs-~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
|++++|.++. .+++|.++|..+..++.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666655 588999999999888877654
No 439
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=66.80 E-value=72 Score=41.29 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=85.2
Q ss_pred CEEEEEEcC---------CcEEEEcCCC-----c--------eEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 001621 48 RLLAIATLD---------GRIKVIGGDG-----I--------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 48 ~lLAvgt~d---------G~I~v~~~~~-----~--------~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
.+||+|+.- |+|+||+.-. . ..++.-+-+++|..++=.. ++|+++ ....|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~--G~l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVR--GHLLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEec--cEEEEc-cCcEEEEEEe
Confidence 489999852 9999998411 1 1122223357888776554 446654 4667999999
Q ss_pred C-CCceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001621 106 E-SRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1043)
Q Consensus 106 ~-t~~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~ 184 (1043)
+ ...++..-...-++.-.....=.++++.|+--..|..+-++.+..++.. +.+ ....-.+.++.|
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL---------~sr-----d~~~l~v~s~EF 1189 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSL---------LSR-----DFEPLNVYSTEF 1189 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEE---------eec-----CCchhhceeeee
Confidence 4 4444433223334444444445678889988888988888776444332 101 011234677777
Q ss_pred cCCCCCCEEEEEECCCeEEEEEcc
Q 001621 185 HPNSSGNRVLIAYENALVILWDVS 208 (1043)
Q Consensus 185 sp~d~g~~ll~~~~dg~I~lWd~~ 208 (1043)
--+...-.++++..++.|.+|-..
T Consensus 1190 LVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1190 LVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEcCCeeEEEEEcCCCcEEEEEeC
Confidence 654212235777778888776543
No 440
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=66.51 E-value=44 Score=36.18 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcC----C--C-cEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCC
Q 001621 602 VNSPVRALQFTS----S--G-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1043)
Q Consensus 602 h~~~Vt~la~s~----d--g-~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~ 674 (1043)
+.+.||||+--. + + ..|++|+++|.|.|.|-+.-.++.+..+ .+-|| .+.-+ |.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l---psvPv-~i~~~--G~------------- 235 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL---PSVPV-FISVS--GQ------------- 235 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec---CCCce-EEEEE--ee-------------
Confidence 455677776422 1 1 3799999999999999999999988776 22344 32221 10
Q ss_pred CCC-CCCCceEEEEeccCceEEEE
Q 001621 675 EVP-VNPAEEVIIVLFKDAKISIV 697 (1043)
Q Consensus 675 ~~~-~~~~~~~l~~gt~dg~I~~~ 697 (1043)
++ .+ -.+++++.||.|+++
T Consensus 236 -~devd---yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 236 -YDEVD---YRIVVACRDGKIYTI 255 (257)
T ss_pred -eeccc---eEEEEEeCCCEEEEE
Confidence 11 12 338999999999986
No 441
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=66.16 E-value=3.2e+02 Score=33.60 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=85.3
Q ss_pred CCCCcEEEEEeCCC------cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecC------cc
Q 001621 492 HSVDRVYLAGYHDG------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF------GL 559 (1043)
Q Consensus 492 s~~~~~l~tg~~Dg------tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~d------G~ 559 (1043)
+..+.+++.||.++ +|..+|..++.-..+..+. .. ..-.++++- ++...++|+.+ .+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~---------~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP---------SP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC---------cc-cccccEEEE-CCEEEEEccccCCCcccce
Confidence 34567888888874 6778888777522222111 11 123344444 45777899888 35
Q ss_pred EEEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCe-----EEEEEcCC
Q 001621 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR-----VAVLDMNL 634 (1043)
Q Consensus 560 V~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~-----V~vwD~~~ 634 (1043)
|..||...+.-. ..-.....+...=...-+|..-|+|+.||. |-.||.++
T Consensus 351 ve~YD~~~~~W~-------------------------~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 351 VERYDPRTNQWT-------------------------PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEEecCCCCcee-------------------------ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 666776654311 100111111111111227888999999975 55667666
Q ss_pred ceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccC------ceEEEEcCCCCCeeecC
Q 001621 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD------AKISIVGGSSENMISSS 708 (1043)
Q Consensus 635 ~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~d------g~I~~~d~~~g~~l~~~ 708 (1043)
..+-..... .+..-.|... .+.+.+.++|+.+ .+|..+|+.++.-....
T Consensus 406 ~~W~~va~m------~~~r~~~gv~-------------------~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 406 NKWTPVAPM------LTRRSGHGVA-------------------VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CcccccCCC------CcceeeeEEE-------------------EECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 554322211 1111111110 0113445555533 45788888888777777
Q ss_pred CCCcCCCce
Q 001621 709 PWHLKKKVI 717 (1043)
Q Consensus 709 ~~~~~~~~~ 717 (1043)
+|.......
T Consensus 461 ~M~~~R~~~ 469 (571)
T KOG4441|consen 461 PMNTRRSGF 469 (571)
T ss_pred Ccccccccc
Confidence 766544333
No 442
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.16 E-value=2.3e+02 Score=31.79 Aligned_cols=178 Identities=9% Similarity=0.046 Sum_probs=81.4
Q ss_pred EcCCcEEEEcCC--CceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEEeecCCCEEEEEEeCCCC
Q 001621 54 TLDGRIKVIGGD--GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL-ACCLKWESNITAFSVISGSH 130 (1043)
Q Consensus 54 t~dG~I~v~~~~--~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~-l~~~~~~~~Vtav~~sp~~~ 130 (1043)
+..|.|+.=.-. +-+.+. .+....+..+..++|+.++++++..+...-||--...- .+.......|.++.|+|++.
T Consensus 121 ~~~G~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~ 199 (302)
T PF14870_consen 121 GDRGAIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN 199 (302)
T ss_dssp ETT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred cCCCcEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC
Confidence 455666553222 223222 23346788999999977666665555566787543322 22223457899999999977
Q ss_pred EEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCC
Q 001621 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 131 ~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
+.+++ ..|.|+.=+. .+ ... .+. +.........-.+..++|.+. +. +.+++..|.+ +.+...|
T Consensus 200 lw~~~-~Gg~~~~s~~-~~--~~~--~w~-------~~~~~~~~~~~~~ld~a~~~~--~~-~wa~gg~G~l-~~S~DgG 262 (302)
T PF14870_consen 200 LWMLA-RGGQIQFSDD-PD--DGE--TWS-------EPIIPIKTNGYGILDLAYRPP--NE-IWAVGGSGTL-LVSTDGG 262 (302)
T ss_dssp EEEEE-TTTEEEEEE--TT--EEE--EE----------B-TTSS--S-EEEEEESSS--S--EEEEESTT-E-EEESSTT
T ss_pred EEEEe-CCcEEEEccC-CC--Ccc--ccc-------cccCCcccCceeeEEEEecCC--CC-EEEEeCCccE-EEeCCCC
Confidence 66554 7776643220 11 111 011 111001122334889999984 54 7777888874 6666666
Q ss_pred eEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001621 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1043)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iW 277 (1043)
+-=..-.. ++. -...+..+.|. +. ..-...+.+|.|.-|
T Consensus 263 ktW~~~~~--------------------~~~------~~~n~~~i~f~-~~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRV--------------------GEN------VPSNLYRIVFV-NP-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS-EE-GG--------------------GTT------SSS---EEEEE-ET-TEEEEE-STTEEEEE
T ss_pred ccceECcc--------------------ccC------CCCceEEEEEc-CC-CceEEECCCcEEEEe
Confidence 43211100 000 13457778886 33 445556678888766
No 443
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.38 E-value=4e+02 Score=34.04 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCCCC---------eEEEEEec----------------CCCEEEEEECCCcEE
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP---------YKNLEFLQ----------------NQGFLISITNDNEIQ 101 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~~~---------V~~l~Fs~----------------d~~~Lvs~s~d~~I~ 101 (1043)
+..|.+++.++.|+-+|..+.+.+..+..... ++.+.+.. .+++++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66788888888888888887777765543221 22233321 234788888999999
Q ss_pred EEECCCCceeEEeecCC
Q 001621 102 VWSLESRSLACCLKWES 118 (1043)
Q Consensus 102 vWdl~t~~~l~~~~~~~ 118 (1043)
-.|.+||+.+..+..++
T Consensus 274 ALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG 290 (764)
T ss_pred EEECCCCCEEEEecCCC
Confidence 99999999987765443
No 444
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=64.11 E-value=1.4e+02 Score=36.76 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=83.0
Q ss_pred CCCCcEEEEEeCC-C-----cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCcc-----E
Q 001621 492 HSVDRVYLAGYHD-G-----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL-----V 560 (1043)
Q Consensus 492 s~~~~~l~tg~~D-g-----tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~-----V 560 (1043)
.-++.++++||.| | +|..+|...+.=..+..+. ...+...|. .-+|.+.|+|+.||. |
T Consensus 330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------~~R~~~~v~----~l~g~iYavGG~dg~~~l~sv 398 (571)
T KOG4441|consen 330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------TKRSDFGVA----VLDGKLYAVGGFDGEKSLNSV 398 (571)
T ss_pred EECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc-------CccccceeE----EECCEEEEEeccccccccccE
Confidence 3456899999999 3 5677777766511111110 001111122 225778899999975 4
Q ss_pred EEEEecCCCcccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCe------EEEEEcCC
Q 001621 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR------VAVLDMNL 634 (1043)
Q Consensus 561 ~i~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~------V~vwD~~~ 634 (1043)
-.||..++.-. ..-......-..-+..-+|+.-++|+.|+. |..+|..+
T Consensus 399 E~YDp~~~~W~-------------------------~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 399 ECYDPVTNKWT-------------------------PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred EEecCCCCccc-------------------------ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 44554443211 000111111112222347888889986654 56777777
Q ss_pred ceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCc-----eEEEEcCCCCCeeecCC
Q 001621 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA-----KISIVGGSSENMISSSP 709 (1043)
Q Consensus 635 ~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg-----~I~~~d~~~g~~l~~~~ 709 (1043)
..+......... ..... ++. +.+.+.++|+.|+ +|-.+|+.+.+-...++
T Consensus 454 ~~W~~~~~M~~~-R~~~g-~a~-----------------------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 454 NTWTLIAPMNTR-RSGFG-VAV-----------------------LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred CceeecCCcccc-cccce-EEE-----------------------ECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 666432221110 01111 111 1134466676665 37788988877666665
Q ss_pred CCcCCCc
Q 001621 710 WHLKKKV 716 (1043)
Q Consensus 710 ~~~~~~~ 716 (1043)
|......
T Consensus 509 m~~~rs~ 515 (571)
T KOG4441|consen 509 MTSPRSA 515 (571)
T ss_pred Ccccccc
Confidence 5554433
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=64.08 E-value=3.1e+02 Score=32.87 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=18.6
Q ss_pred CCcEEEEEeCCC---eEEEEEcCCceEEE
Q 001621 614 SGAKLAVGFECG---RVAVLDMNLLSVLF 639 (1043)
Q Consensus 614 dg~~lA~Gs~dg---~V~vwD~~~~~~l~ 639 (1043)
+|+.-++|+.++ ++..||.++.++..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 677778888654 46778888776643
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.73 E-value=76 Score=35.06 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=42.4
Q ss_pred ecCCCCCEEEEEEcCCCcEEEEEe------CCCeEEEEEcCCceEEEEeecC-CCCCCCeEEEEEE
Q 001621 599 FSLVNSPVRALQFTSSGAKLAVGF------ECGRVAVLDMNLLSVLFFTDDI-SGSSSPIISMTWT 657 (1043)
Q Consensus 599 l~~h~~~Vt~la~s~dg~~lA~Gs------~dg~V~vwD~~~~~~l~~~~~~-~~~~~~V~sl~fs 657 (1043)
-..-++.|++|.|..+.+++++|. ....+..||..+..+.-...-. ...+++|+.+.+.
T Consensus 32 g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 32 GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEee
Confidence 345778999999998888888886 5667999999987763221100 1246889999885
No 447
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.72 E-value=9.7 Score=27.94 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.3
Q ss_pred EEEeccCceEEEEcCCCCCeeecC
Q 001621 685 IIVLFKDAKISIVGGSSENMISSS 708 (1043)
Q Consensus 685 l~~gt~dg~I~~~d~~~g~~l~~~ 708 (1043)
+++++.||.|+.+|..||+++-..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEee
Confidence 677899999999999999998654
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.97 E-value=48 Score=41.15 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=73.8
Q ss_pred CCCCeEEEEEcC--CCCEEEEEEcCCcEEEEcCCCc--------------------eEEEecCCCCCeEEEEEe--cCCC
Q 001621 34 IPATASILAFDH--IQRLLAIATLDGRIKVIGGDGI--------------------EGLLISPSQLPYKNLEFL--QNQG 89 (1043)
Q Consensus 34 ~~~~v~~lafsp--~g~lLAvgt~dG~I~v~~~~~~--------------------~~~~~~~~~~~V~~l~Fs--~d~~ 89 (1043)
.|..|+.+..+- ....|++++.||.|.+|..+.. .+.+...-..+++.|++. ...+
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce
Confidence 677788877765 3468999999999999953210 111222335689999998 6655
Q ss_pred EEEEEECCCcEEEEECCCC--ce--eEEeecCCCEEEEEEeCCC-----C-EEEEEeCCCcEEEEEE
Q 001621 90 FLISITNDNEIQVWSLESR--SL--ACCLKWESNITAFSVISGS-----H-FMYIGDENGLMSVIKY 146 (1043)
Q Consensus 90 ~Lvs~s~d~~I~vWdl~t~--~~--l~~~~~~~~Vtav~~sp~~-----~-~l~vG~~dG~v~v~~~ 146 (1043)
++++++....|.||-+... +. ..+.....+|-+++|.++. . +++.++=.|.+-+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5555556677887765442 21 1133445789999987654 2 6777778888766655
No 449
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=62.96 E-value=2.9e+02 Score=31.94 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred EEEEEc-C---CcEEEEcCC--CceEEEecC-------CCCCeEEEEEe--c-CC-CEEEEEECCCcEEEEECC---CC-
Q 001621 50 LAIATL-D---GRIKVIGGD--GIEGLLISP-------SQLPYKNLEFL--Q-NQ-GFLISITNDNEIQVWSLE---SR- 108 (1043)
Q Consensus 50 LAvgt~-d---G~I~v~~~~--~~~~~~~~~-------~~~~V~~l~Fs--~-d~-~~Lvs~s~d~~I~vWdl~---t~- 108 (1043)
||+++. + .+|++|..+ +........ ....+..+++. + ++ -|.+..+.+|.+.-|-|. .+
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~ 195 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK 195 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence 555553 2 368998653 333322111 11235566664 3 23 367777888988877774 33
Q ss_pred ---ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 109 ---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 109 ---~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+++++|...+.+..|+++....+||+|-++- -||.|+.+...-.. +..+. .. ....-...|..|++-
T Consensus 196 v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~--GIW~y~Aep~~~~~-~~~v~-----~~--~g~~l~aDvEGlaly 265 (381)
T PF02333_consen 196 VSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV--GIWRYDAEPEGGND-RTLVA-----SA--DGDGLVADVEGLALY 265 (381)
T ss_dssp EEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT--EEEEEESSCCC-S---EEEE-----EB--SSSSB-S-EEEEEEE
T ss_pred EeeEEEEEecCCCcceEEEEecccCCEEEecCcc--EEEEEecCCCCCCc-ceeee-----cc--cccccccCccceEEE
Confidence 3678888888999999999999999999986 45998765321110 01110 00 001123568888774
Q ss_pred CCCCCCEEEEEEC--CCeEEEEEccC
Q 001621 186 PNSSGNRVLIAYE--NALVILWDVSE 209 (1043)
Q Consensus 186 p~d~g~~ll~~~~--dg~I~lWd~~~ 209 (1043)
...+++-.|++++ +++..||+...
T Consensus 266 ~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 266 YGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp E-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 4323443444444 55889999764
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=62.92 E-value=3.1e+02 Score=32.24 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCcEEEEcCCCc-----eEEEecCCCCCeEEEEE
Q 001621 47 QRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEF 84 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~-----~~~~~~~~~~~V~~l~F 84 (1043)
...+++|+.+|.++||..... ..+++..-+.||..|+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~ 79 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVEC 79 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEe
Confidence 358999999999999985332 24455555678888765
No 451
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=62.57 E-value=2.4e+02 Score=30.83 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=73.7
Q ss_pred ceeEEeecC--CCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecC
Q 001621 109 SLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1043)
Q Consensus 109 ~~l~~~~~~--~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp 186 (1043)
+.+.++.++ .-...+.|..++.++-+.+..|.-+|-.++...++... ...++...+. ..++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~~~Fg-------------EGit~~~ 99 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPPRYFG-------------EGITILG 99 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-EEE-TTT--E-------------EEEEEET
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-EEECCccccc-------------eeEEEEC
Confidence 345566544 23456777777776667677786666667766665542 1334432221 2333332
Q ss_pred CCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEE
Q 001621 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1043)
Q Consensus 187 ~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~ 266 (1043)
.+.......++...+||..+-+.+..+.+ ..+=+.+| .+|..|+
T Consensus 100 ---d~l~qLTWk~~~~f~yd~~tl~~~~~~~y------------------------------~~EGWGLt---~dg~~Li 143 (264)
T PF05096_consen 100 ---DKLYQLTWKEGTGFVYDPNTLKKIGTFPY------------------------------PGEGWGLT---SDGKRLI 143 (264)
T ss_dssp ---TEEEEEESSSSEEEEEETTTTEEEEEEE-------------------------------SSS--EEE---ECSSCEE
T ss_pred ---CEEEEEEecCCeEEEEccccceEEEEEec------------------------------CCcceEEE---cCCCEEE
Confidence 33455667788999999999888877755 23346676 3677888
Q ss_pred EEEcCCcEEEEcCCCCCc
Q 001621 267 VGYIDGDILLWNTSTTAS 284 (1043)
Q Consensus 267 tg~~DG~I~iWd~~tg~~ 284 (1043)
.......|.++|..+-+.
T Consensus 144 ~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 144 MSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EE-SSSEEEEE-TTT-SE
T ss_pred EECCccceEEECCcccce
Confidence 777788899999876543
No 452
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=62.17 E-value=2.6e+02 Score=35.70 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=94.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEee---------cCCCEEEEEEe--CCCCEEEEEeCC---CcEEEEEEeCCCC--eE
Q 001621 90 FLISITNDNEIQVWSLESRSLACCLK---------WESNITAFSVI--SGSHFMYIGDEN---GLMSVIKYDADEG--KL 153 (1043)
Q Consensus 90 ~Lvs~s~d~~I~vWdl~t~~~l~~~~---------~~~~Vtav~~s--p~~~~l~vG~~d---G~v~v~~~d~~~~--~l 153 (1043)
-++++...|.|++|=.+....+.... ....|+..++. .+|..+++++.+ +.|+++.+..+=+ +.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 47888889999999884332222221 23556666655 456555554444 6788776543211 11
Q ss_pred eeeceeecccccccccCC--------------CCCCCCCeEEEEecC----CCCCCEEEEEEC-----CCeEEEEEccCC
Q 001621 154 FQLPYNISADALSEKAGF--------------PLLSHQPVVGVLPHP----NSSGNRVLIAYE-----NALVILWDVSEA 210 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~--------------~~~~~~~V~sl~~sp----~d~g~~ll~~~~-----dg~I~lWd~~~~ 210 (1043)
...+...|...+...... +......++.|.|-| .+....++++++ ...|.-|.+.+.
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 000100010000000000 001234566777755 333444677665 446899998765
Q ss_pred eE-EEEeCCcccccccccccCCCCCCCCcccC------c--cCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 211 QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEG------I--SEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 211 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~--~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
.. +...-. ++. .....+.. + -.+....+.|.+++-. .-+..++..+.||+|.+.|-.+
T Consensus 224 ~~~lh~~F~-------ql~-----s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t 290 (753)
T PF11635_consen 224 QQPLHPAFQ-------QLG-----SKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNT 290 (753)
T ss_pred Ccccchhhh-------hcC-----CCCcCCCCCCCceeEEEecccccCCeEEEEEec-ccCcEEEEEEcCCeEEEEecCc
Confidence 42 111100 100 00000000 0 0122236788898875 6788999999999999999888
Q ss_pred CCccc
Q 001621 282 TASTK 286 (1043)
Q Consensus 282 g~~~~ 286 (1043)
-+.+.
T Consensus 291 ~~~~~ 295 (753)
T PF11635_consen 291 MKELN 295 (753)
T ss_pred chhhc
Confidence 76443
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.08 E-value=4e+02 Score=33.24 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCc
Q 001621 603 NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAE 682 (1043)
Q Consensus 603 ~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~ 682 (1043)
.+++-.+-||.+-. |.+-..||+|+++++-+..+-+.....+.....|....|...|
T Consensus 83 ~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G---------------------- 139 (829)
T KOG2280|consen 83 HGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG---------------------- 139 (829)
T ss_pred CCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc----------------------
Confidence 34788999998886 5566899999999986644332100001122345555554322
Q ss_pred eEEEEeccCceEEEEcCCCCCe
Q 001621 683 EVIIVLFKDAKISIVGGSSENM 704 (1043)
Q Consensus 683 ~~l~~gt~dg~I~~~d~~~g~~ 704 (1043)
+++.+.+|.|...+...-..
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPK 159 (829)
T ss_pred --eEEEecCCcEEEEcCCCcch
Confidence 78889999999988655433
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.98 E-value=32 Score=40.31 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEE-----EcCCCc--------eE--------EEecCCCCCeEEEEEecCC---CEEE
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKV-----IGGDGI--------EG--------LLISPSQLPYKNLEFLQNQ---GFLI 92 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v-----~~~~~~--------~~--------~~~~~~~~~V~~l~Fs~d~---~~Lv 92 (1043)
.|..+-.++.|+.+|..+.+|.+.. |+.++. .+ +++....-.++..+|.|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677788999999999999987655 664321 11 1222223467888999975 6899
Q ss_pred EEECCCcEEEEECCCCceeEEe
Q 001621 93 SITNDNEIQVWSLESRSLACCL 114 (1043)
Q Consensus 93 s~s~d~~I~vWdl~t~~~l~~~ 114 (1043)
..+.|+.|++||+..-+.+...
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 9999999999999887666433
No 455
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=60.51 E-value=3e+02 Score=31.37 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=44.0
Q ss_pred CeEEEEEecCCCEEEEE--ECCC---cEEEEECCCCceeEEe--ecCC---CEEEEEEe-CCC-CEEEEEeCCCcEEEEE
Q 001621 78 PYKNLEFLQNQGFLISI--TNDN---EIQVWSLESRSLACCL--KWES---NITAFSVI-SGS-HFMYIGDENGLMSVIK 145 (1043)
Q Consensus 78 ~V~~l~Fs~d~~~Lvs~--s~d~---~I~vWdl~t~~~l~~~--~~~~---~Vtav~~s-p~~-~~l~vG~~dG~v~v~~ 145 (1043)
-+..+.|++++..|+.. +.+. .+.+.|..+++....+ ..++ .-..+.+. +++ .++.+...+|--+++.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 36778899987734433 3332 3677888776543222 2222 22345554 554 4555666788888888
Q ss_pred EeCCCCeE
Q 001621 146 YDADEGKL 153 (1043)
Q Consensus 146 ~d~~~~~l 153 (1043)
++.+.+..
T Consensus 265 ~~~~~~~~ 272 (353)
T PF00930_consen 265 YDLDGGKP 272 (353)
T ss_dssp EETTSSEE
T ss_pred Ecccccce
Confidence 88766543
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=60.02 E-value=2.8e+02 Score=35.55 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred EcC-CCCEEEEEEcC--CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-ecCC
Q 001621 43 FDH-IQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWES 118 (1043)
Q Consensus 43 fsp-~g~lLAvgt~d--G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~-~~~~ 118 (1043)
||| .+.+||+|..- -..+--.....-..+.....+.+..|+-......-..-..+..+++--+.......-. ....
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred CEEEEEEe-------CCCCEEEEEeCCCcEEEEE------EeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001621 119 NITAFSVI-------SGSHFMYIGDENGLMSVIK------YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1043)
Q Consensus 119 ~Vtav~~s-------p~~~~l~vG~~dG~v~v~~------~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~s 185 (1043)
+|..+.|. +..+||++=+... +.|+. ...........-...- ..+........+...|+|+
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~s-t~I~~p~~~~~~~~~~~~~s~i~~~~l-----~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETS-TTILRPEYHRVISSIRSRPSRIDPNPL-----LTISSSDTGGFPHADVAFN 154 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCE-EEEEEcccccccccccCCcccccccee-----EEechhhcCCCccceEEec
Q ss_pred CCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEE
Q 001621 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1043)
Q Consensus 186 p~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l 265 (1043)
|.+... +++....|...|||+........-.. .......|.- ..+..+......++|. ++-..|
T Consensus 155 P~~~~q-~AiVD~~G~Wsvw~i~~~~~~~~~~~-------------~~~~~~~gsi-~~d~~e~s~w~rI~W~-~~~~~l 218 (765)
T PF10214_consen 155 PWDQRQ-FAIVDEKGNWSVWDIKGRPKRKSSNL-------------RLSRNISGSI-IFDPEELSNWKRILWV-SDSNRL 218 (765)
T ss_pred cCccce-EEEEeccCcEEEEEeccccccCCcce-------------eeccCCCccc-cCCCcccCcceeeEec-CCCCEE
Q ss_pred EEEEcCCcEEE
Q 001621 266 AVGYIDGDILL 276 (1043)
Q Consensus 266 ~tg~~DG~I~i 276 (1043)
+.+....-..+
T Consensus 219 Lv~~r~~l~~~ 229 (765)
T PF10214_consen 219 LVCNRSKLMLI 229 (765)
T ss_pred EEEcCCceEEE
No 457
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=59.47 E-value=15 Score=37.43 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhcccccc
Q 001621 988 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1042 (1043)
Q Consensus 988 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~~ 1042 (1043)
+.-.++.+.++++-+|+|||+.+-+++..|-..+.=|-..|+... ..-||+
T Consensus 140 e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n----~~~~~~ 190 (190)
T COG5143 140 ETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSN----LCCLIN 190 (190)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhh----hhheeC
Confidence 445789999999999999999999999999999988888776544 445664
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=59.25 E-value=3.5e+02 Score=31.64 Aligned_cols=151 Identities=8% Similarity=0.023 Sum_probs=74.2
Q ss_pred EEEEecCCCEEEEEECCCc-EEEEECCCCc-eeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeece
Q 001621 81 NLEFLQNQGFLISITNDNE-IQVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1043)
Q Consensus 81 ~l~Fs~d~~~Lvs~s~d~~-I~vWdl~t~~-~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~ 158 (1043)
.+..++|+.+ +.++..|. ++-||--... ..........++++.+.+++.+++++ ..|.+. +..+. ++. +
T Consensus 243 ~v~~~~dG~~-~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~--G~~----~ 313 (398)
T PLN00033 243 TVNRSPDGDY-VAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGT--GLT----E 313 (398)
T ss_pred eEEEcCCCCE-EEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCC--CCc----c
Confidence 3445666544 44444443 3334432211 11223345678999999998888766 556442 22222 210 1
Q ss_pred eecccccccccCCCC-CCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCC
Q 001621 159 NISADALSEKAGFPL-LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1043)
Q Consensus 159 ~i~~~~~~~~~~~~~-~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1043)
.+. .+.+ .+. .....+.++.|.+ +++ +++++..|.+... ...++-=..... .
T Consensus 314 ~~~--~f~~---~~~~~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~------------------~ 366 (398)
T PLN00033 314 EDF--DFEE---ADIKSRGFGILDVGYRS--KKE-AWAAGGSGILLRS-TDGGKSWKRDKG------------------A 366 (398)
T ss_pred ccc--ceee---cccCCCCcceEEEEEcC--CCc-EEEEECCCcEEEe-CCCCcceeEccc------------------c
Confidence 000 0000 000 1124588888887 365 7788888875443 344432111100 0
Q ss_pred cccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEE
Q 001621 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1043)
Q Consensus 238 ~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iW 277 (1043)
+ . -......+.|. +++ .....+.+|.|.-|
T Consensus 367 ~--~------~~~~ly~v~f~-~~~-~g~~~G~~G~il~~ 396 (398)
T PLN00033 367 D--N------IAANLYSVKFF-DDK-KGFVLGNDGVLLRY 396 (398)
T ss_pred C--C------CCcceeEEEEc-CCC-ceEEEeCCcEEEEe
Confidence 0 0 03457788885 444 44555677887665
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=58.78 E-value=21 Score=41.47 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCCEEEEEEcCCcEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001621 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 46 ~g~lLAvgt~dG~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
...++|+|+..|.|++||.-+......+|. ...|+.+..+.+|.++++.+ .+.+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 346899999999999999877665555554 56899999999988777654 6677777764
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.70 E-value=3.8e+02 Score=35.60 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=57.8
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCC-CceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCC
Q 001621 491 CHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1043)
Q Consensus 491 ~s~~~~~l~tg~~DgtVriWD~~~~-~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~ 569 (1043)
|+.-++.-+|- |..+.+|++.++ ++.....++..+..|.+-.+... .|-|.=++|.+-+.--.|.|+-+.-..
T Consensus 87 FpeI~RaWiTi--Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpg----vFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 87 FPEIGRAWITI--DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPG----VFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred chhhcceEEEe--CCeEEEEEcCCCCccccccchhhhheeeeeecCCCC----cchhhhheeEEecccceEEEEEEEecc
Confidence 44555555543 788999999984 33222222222222222111111 345554444444444567787765332
Q ss_pred cc-cceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001621 570 DA-KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1043)
Q Consensus 570 ~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~ 632 (1043)
.. +...|.+ + .........|+|+....+|+ +.-|+.|| .||.+
T Consensus 161 ~~~~~~~f~~-------------~----~~i~~dg~~V~~I~~t~nGR-IF~~G~dg--~lyEl 204 (1311)
T KOG1900|consen 161 FTGELSIFNT-------------S----FKISVDGVSVNCITYTENGR-IFFAGRDG--NLYEL 204 (1311)
T ss_pred ccCccccccc-------------c----eeeecCCceEEEEEeccCCc-EEEeecCC--CEEEE
Confidence 11 1111110 0 11123356799999999997 55566666 45654
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.27 E-value=1.7e+02 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCceEEEEeec
Q 001621 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 601 ~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
...+.+.-+..||+.++||-=+.+|.|.+.++.-.+++...++
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 3456788999999999999999999999999877666544443
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=58.04 E-value=1.8e+02 Score=37.39 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=64.9
Q ss_pred CCCCCEEEEEEcCCC------cEEEEEeCCCeEEEEEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCC
Q 001621 601 LVNSPVRALQFTSSG------AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1043)
Q Consensus 601 ~h~~~Vt~la~s~dg------~~lA~Gs~dg~V~vwD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~ 674 (1043)
..+..|.|+++.+++ +++|.|+.|++|+++.+.-...+..... .+.+.++.++.+-+.....+.
T Consensus 580 tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~-q~l~~~~~s~~iv~~~~~~~~--------- 649 (1205)
T KOG1898|consen 580 TLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV-QGLSSPPESLCIVEMEATGGT--------- 649 (1205)
T ss_pred eeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc-cccCCCccceEEEEecccCCc---------
Confidence 356789999999986 6899999999999999975444433222 235678888888765432111
Q ss_pred CCCCCCCceEEEEeccCceEEEE--cCCCCCeeecC
Q 001621 675 EVPVNPAEEVIIVLFKDAKISIV--GGSSENMISSS 708 (1043)
Q Consensus 675 ~~~~~~~~~~l~~gt~dg~I~~~--d~~~g~~l~~~ 708 (1043)
..+-.+|.+|-.+|.++-+ |..+|.++-+-
T Consensus 650 ----~~~~L~l~~GL~NGvllR~~id~v~G~l~d~r 681 (1205)
T KOG1898|consen 650 ----DVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIR 681 (1205)
T ss_pred ----cceeEEEEecccccEEEEEEecccccceeeeh
Confidence 1334678999999998655 67777655443
No 463
>PHA02790 Kelch-like protein; Provisional
Probab=58.00 E-value=1.7e+02 Score=35.20 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCCCcEEEEEeCCC--cEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCc---cEEEEEec
Q 001621 492 HSVDRVYLAGYHDG--SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG---LVYIYNLN 566 (1043)
Q Consensus 492 s~~~~~l~tg~~Dg--tVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG---~V~i~~~~ 566 (1043)
.-++.+++.||.++ +|..||...+.-..+..+ ....... .+..-+++..++|+.++ .+..||..
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l---------~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL---------LKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCC---------CCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 35678999998654 678888766542211111 1111111 12233677778888654 36667765
Q ss_pred CC
Q 001621 567 GS 568 (1043)
Q Consensus 567 ~~ 568 (1043)
++
T Consensus 385 ~~ 386 (480)
T PHA02790 385 HD 386 (480)
T ss_pred CC
Confidence 43
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.85 E-value=1.5e+02 Score=35.07 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCc--eEEEecC------CCCCeEEEEEecCC------CEEEEEE---
Q 001621 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISP------SQLPYKNLEFLQNQ------GFLISIT--- 95 (1043)
Q Consensus 33 G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~--~~~~~~~------~~~~V~~l~Fs~d~------~~Lvs~s--- 95 (1043)
|+ .....++|.|+|++|++--..|+|++++..+. ..+..++ .......|+|+|+- ++|....
T Consensus 28 GL-~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GL-NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CC-CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 44 35788999999988876655799999975432 2222222 24567899998873 3444432
Q ss_pred -------CCCcEEEEECCCC--c------eeEEeec--CCCEEEEEEeCCCCEEEEEeCCC
Q 001621 96 -------NDNEIQVWSLESR--S------LACCLKW--ESNITAFSVISGSHFMYIGDENG 139 (1043)
Q Consensus 96 -------~d~~I~vWdl~t~--~------~l~~~~~--~~~Vtav~~sp~~~~l~vG~~dG 139 (1043)
....|.-|.+... . ++..+.. ...-..+.|.||+. ||++..|+
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 1234555665421 1 1111111 12245677999986 55444443
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=55.53 E-value=1.3e+02 Score=38.21 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeecCCCEE---------EEEEe----------------CCCCEEEEEeCCCcEE
Q 001621 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNIT---------AFSVI----------------SGSHFMYIGDENGLMS 142 (1043)
Q Consensus 88 ~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vt---------av~~s----------------p~~~~l~vG~~dG~v~ 142 (1043)
++.|+.++.++.|.-.|..||+.+-.+..+..+. .+++- .....+++++.|| +
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg--~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA--R 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC--e
Confidence 3678888889999999999999888776543221 11111 1345889999999 4
Q ss_pred EEEEeCCCCeEeeeceeeccc---ccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC----------CCeEEEEEccC
Q 001621 143 VIKYDADEGKLFQLPYNISAD---ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSE 209 (1043)
Q Consensus 143 v~~~d~~~~~l~~~~~~i~~~---~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~----------dg~I~lWd~~~ 209 (1043)
++.+|.+.++.. +.+..+ .+...++... .. -..+.-.|.=.+..+++|.. +|.|+-+|+++
T Consensus 272 LiALDA~TGk~~---W~fg~~G~vdl~~~~g~~~--~g-~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 272 LIALDADTGKLC---EDFGNNGTVDLTAGMGTTP--PG-YYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEEEECCCCCEE---EEecCCCceeeecccCcCC--Cc-ccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 577887777665 222110 0111111000 00 00111111101224666643 68899999999
Q ss_pred CeEEEEe
Q 001621 210 AQIIFVG 216 (1043)
Q Consensus 210 ~~~~~~~ 216 (1043)
|+.+-.+
T Consensus 346 Gkl~W~~ 352 (764)
T TIGR03074 346 GALVWAW 352 (764)
T ss_pred CcEeeEE
Confidence 9988765
No 466
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=54.34 E-value=1.1e+02 Score=35.56 Aligned_cols=41 Identities=12% Similarity=-0.052 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCcEEEEEe-CCCeEEEEEcCC---ceEEEEeec
Q 001621 603 NSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNL---LSVLFFTDD 643 (1043)
Q Consensus 603 ~~~Vt~la~s~dg~~lA~Gs-~dg~V~vwD~~~---~~~l~~~~~ 643 (1043)
.+-||.|.+|.|.++|-+.. .+|.|+-||+.. |+++.+..+
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence 45689999999999988776 499999999965 566666544
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=53.62 E-value=4.3e+02 Score=31.03 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEec-----CCCeEEEEecCccEEEEEec
Q 001621 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-----INSSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 492 s~~~~~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fsp-----d~~~La~g~~dG~V~i~~~~ 566 (1043)
+.+...++.|+..|.+||++......++...+ .+..+. .||..|+.-. +...||+ -.-..+.||.+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll----lE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL----LETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE----EEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 34567899999999999999876653321111 111121 3666665432 3346666 455678899885
Q ss_pred CCCcccceeeeccCCCceeeecCCCcceeeEEec-CCCCCEEEEEEcCCC-----cEEEEEeCCCeEEEEEcCCce
Q 001621 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSSG-----AKLAVGFECGRVAVLDMNLLS 636 (1043)
Q Consensus 567 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~Vt~la~s~dg-----~~lA~Gs~dg~V~vwD~~~~~ 636 (1043)
....... .++.++....+. ..+.....+++-|-| .++.+=+.||.+.|++-+.-.
T Consensus 106 ~~~g~~~---------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 106 LVDGTVE---------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred ecCCCcc---------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 4322100 011111111111 112233344443322 479999999999999988543
No 468
>PRK13684 Ycf48-like protein; Provisional
Probab=53.29 E-value=3.9e+02 Score=30.35 Aligned_cols=155 Identities=8% Similarity=0.069 Sum_probs=82.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCceeEEee--cCCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCe
Q 001621 76 QLPYKNLEFLQNQGFLISITNDNEIQV-WSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1043)
Q Consensus 76 ~~~V~~l~Fs~d~~~Lvs~s~d~~I~v-Wdl~t~~~l~~~~--~~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~ 152 (1043)
...+..+.+.+++. ++.++..|.+.. +|- .++.-..+. ....++++.+.+++..+++| ..|.+.+ . +.+.+.
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~-~-s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF-N-DPDDLE 246 (334)
T ss_pred cceEEEEEECCCCe-EEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE-c-cCCCCC
Confidence 35688999999864 555566665532 222 222222222 23678999999999887776 4575421 1 222221
Q ss_pred EeeeceeecccccccccCCC-CCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCC
Q 001621 153 LFQLPYNISADALSEKAGFP-LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1043)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~-~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1043)
- |... ..+ ......+.++.+.|. ++ ++++..+|.+ +.....++.-..... +
T Consensus 247 s----W~~~--------~~~~~~~~~~l~~v~~~~~--~~-~~~~G~~G~v-~~S~d~G~tW~~~~~---------~--- 298 (334)
T PRK13684 247 S----WSKP--------IIPEITNGYGYLDLAYRTP--GE-IWAGGGNGTL-LVSKDGGKTWEKDPV---------G--- 298 (334)
T ss_pred c----cccc--------cCCccccccceeeEEEcCC--CC-EEEEcCCCeE-EEeCCCCCCCeECCc---------C---
Confidence 1 1100 011 112235788889883 65 6777778875 344444432111100 0
Q ss_pred CCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcC
Q 001621 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1043)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~ 279 (1043)
. + .......+.|. .++.. ...+..|.|.-|+-
T Consensus 299 ~------~--------~~~~~~~~~~~-~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 299 E------E--------VPSNFYKIVFL-DPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred C------C--------CCcceEEEEEe-CCCce-EEECCCceEEEecC
Confidence 0 0 02346777775 45444 44667788888763
No 469
>PRK10115 protease 2; Provisional
Probab=52.54 E-value=5.8e+02 Score=32.21 Aligned_cols=116 Identities=7% Similarity=-0.037 Sum_probs=66.3
Q ss_pred CccceeeecccCCCCeEEEEEcCCCCEEEEEEcC-----CcEEEEcCCCceEEEecCCCCCeEEEEEecCCCEEEEEEC-
Q 001621 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN- 96 (1043)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~d-----G~I~v~~~~~~~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~- 96 (1043)
+||+......+-.-.+..+.++|+|++||.+... -+|++.+..+.+.+...-.... ..++|.+|+..|+-...
T Consensus 114 llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 114 LLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEec
Confidence 4455544322222447778899999999987554 3577777765542211111112 45899998765555433
Q ss_pred C-----CcEEEEECCCC--ceeEEeec-CCCEE-EEEEeCCCCEEEEEeCCC
Q 001621 97 D-----NEIQVWSLESR--SLACCLKW-ESNIT-AFSVISGSHFMYIGDENG 139 (1043)
Q Consensus 97 d-----~~I~vWdl~t~--~~l~~~~~-~~~Vt-av~~sp~~~~l~vG~~dG 139 (1043)
+ ..|..|++.++ +-...+.. ..... .+..+.++.++++...++
T Consensus 193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC
Confidence 2 36888999888 32223332 23233 333445888877665544
No 470
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=51.66 E-value=21 Score=24.84 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=21.0
Q ss_pred EEEEeccCceEEEEcCCCCCeeec
Q 001621 684 VIIVLFKDAKISIVGGSSENMISS 707 (1043)
Q Consensus 684 ~l~~gt~dg~I~~~d~~~g~~l~~ 707 (1043)
.+++++.+|.++.+|..+|+++-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 488999999999999999998643
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=51.64 E-value=3.8e+02 Score=34.67 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=86.3
Q ss_pred eEEEEEcCCC--CEEEEEEc-----------CCcEEEEcC-CCc---eEEEecCCCCCeEEEEEecCCCEEEEEECCCcE
Q 001621 38 ASILAFDHIQ--RLLAIATL-----------DGRIKVIGG-DGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1043)
Q Consensus 38 v~~lafsp~g--~lLAvgt~-----------dG~I~v~~~-~~~---~~~~~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I 100 (1043)
+.++.|+..+ -++++|.. +|.++.|+. .+. +.+...+-..+|-+ ..|.+++++++ ..+.+
T Consensus 880 v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~A--i~~f~~~~Lag-vG~~l 956 (1205)
T KOG1898|consen 880 VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGA--ICPFQGRVLAG-VGRFL 956 (1205)
T ss_pred eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceE--EeccCCEEEEe-cccEE
Confidence 4556665433 25666653 366888763 222 23322222344544 45665655554 57899
Q ss_pred EEEECCCCceeEEeec---CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCC
Q 001621 101 QVWSLESRSLACCLKW---ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1043)
Q Consensus 101 ~vWdl~t~~~l~~~~~---~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1043)
+++|+-.+++++.... +..|+.+.+ .+..+++|+..-+|..+.|..++.++.. |.-. . -..
T Consensus 957 ~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~--fadD--~----------~pR 1020 (1205)
T KOG1898|consen 957 RLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV--FADD--P----------VPR 1020 (1205)
T ss_pred EEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE--EeCC--C----------ccc
Confidence 9999999888765543 345666554 5678999998888999999988777763 3211 1 112
Q ss_pred CeEEEEecCCCCCCEEEEEECCCeE
Q 001621 178 PVVGVLPHPNSSGNRVLIAYENALV 202 (1043)
Q Consensus 178 ~V~sl~~sp~d~g~~ll~~~~dg~I 202 (1043)
.|+++.+-- .++ ++.|..-|.+
T Consensus 1021 ~Vt~~~~lD--~~t-vagaDrfGNi 1042 (1205)
T KOG1898|consen 1021 HVTALELLD--YDT-VAGADRFGNI 1042 (1205)
T ss_pred eeeEEEEec--CCc-eeeccccCcE
Confidence 355555443 344 7777666664
No 472
>PHA03098 kelch-like protein; Provisional
Probab=49.91 E-value=3.1e+02 Score=33.27 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=17.1
Q ss_pred CCCcEEEEEeCCC-----cEEEEeCCCCC
Q 001621 493 SVDRVYLAGYHDG-----SVRIWDATYPV 516 (1043)
Q Consensus 493 ~~~~~l~tg~~Dg-----tVriWD~~~~~ 516 (1043)
-++.+++.||.++ ++..||..++.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4677888888763 46778877665
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.39 E-value=1.6e+02 Score=32.49 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=56.6
Q ss_pred cEEEEcCCCceEEEecCC-CCCeEEEEEecCCCEEEEEE------CCCcEEEEECCCCceeEEee-----cCCCEEEEEE
Q 001621 58 RIKVIGGDGIEGLLISPS-QLPYKNLEFLQNQGFLISIT------NDNEIQVWSLESRSLACCLK-----WESNITAFSV 125 (1043)
Q Consensus 58 ~I~v~~~~~~~~~~~~~~-~~~V~~l~Fs~d~~~Lvs~s------~d~~I~vWdl~t~~~l~~~~-----~~~~Vtav~~ 125 (1043)
.|++||..+.+....... ...|..|.|..+...++++. ....+..||+.+......-. .+++|+++.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 578888776665433322 46899999996655555554 34568889998876432222 3478999887
Q ss_pred eCC-C-CEEEEEe-CCCcEEEEEEeC
Q 001621 126 ISG-S-HFMYIGD-ENGLMSVIKYDA 148 (1043)
Q Consensus 126 sp~-~-~~l~vG~-~dG~v~v~~~d~ 148 (1043)
... + ++.+.|. .+|...+..||.
T Consensus 97 ~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 97 ISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eccCCceEEEeceecCCCceEEEEcC
Confidence 533 3 3444444 566666666665
No 474
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=46.17 E-value=2e+02 Score=33.21 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=68.5
Q ss_pred EEEEEcCCCCEEEEEEcC----------CcEEEEcCC-CceEEE-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 001621 39 SILAFDHIQRLLAIATLD----------GRIKVIGGD-GIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1043)
Q Consensus 39 ~~lafsp~g~lLAvgt~d----------G~I~v~~~~-~~~~~~-~~~~~~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~ 106 (1043)
...+-++-..+|-++|.= ..|+|+|-+ ++...+ -+.....|-++.|..|..++++--.-.-+.+.|+.
T Consensus 378 n~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDls 457 (603)
T COG4880 378 NSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLS 457 (603)
T ss_pred hcccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcC
Confidence 344445555566555521 345555532 122222 22335689999999999999998887889999997
Q ss_pred CC---ceeEEeecCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q 001621 107 SR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1043)
Q Consensus 107 t~---~~l~~~~~~~~Vtav~~sp~~~~l~vG~~dG~v~v~ 144 (1043)
.. +.+..++.++--+-++-.-.+.++-+|-.+|.+++=
T Consensus 458 NPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~vKiS 498 (603)
T COG4880 458 NPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGGVKIS 498 (603)
T ss_pred CCCCCceeEEEecCCchhhccccCCCcEEEeecccCCceEE
Confidence 64 567777776654555544566778888888877653
No 475
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=45.97 E-value=25 Score=43.48 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=73.9
Q ss_pred CeEEEEecCccEEEEEecCCC-cccceeeeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeE
Q 001621 549 SSLAVGNEFGLVYIYNLNGSL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1043)
Q Consensus 549 ~~La~g~~dG~V~i~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V 627 (1043)
-...+|+.+|.+-||.-.... .+.... .+..-..++-+++|++.. +..|.-||++
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~----------------------~~spe~~~v~~l~~ss~S--lgagl~dgt~ 603 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSE----------------------PPSPEHESVKLLLFSSGS--LGAGLIDGTL 603 (925)
T ss_pred CcccccCccceeEEeeccCCcccceecc----------------------CCCCchhhhhhhhccccc--cccCccCCcc
Confidence 456789999999998765211 111111 112233456667766544 4445555554
Q ss_pred EE--------EEcCCceEEEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCceEEEEeccCceEEEEcC
Q 001621 628 AV--------LDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1043)
Q Consensus 628 ~v--------wD~~~~~~l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~gt~dg~I~~~d~ 699 (1043)
.. ||.+-+.++.. ...||.+++|..+ .+.++.+|.|.+|.+
T Consensus 604 a~y~rap~gSwd~ep~~~~~~------g~lPvrsla~~ed-------------------------~~was~gG~V~vi~~ 652 (925)
T KOG3522|consen 604 AVYGRAPSGSWDGEPNISIPT------GSLPVRSLAFQED-------------------------FVWASEGGCVHVIPS 652 (925)
T ss_pred ccccCCCCCCCCCCCcccccc------CCccccchhhhhc-------------------------eeeeecCCceEEEec
Confidence 43 55552222221 2468888888532 688999999999998
Q ss_pred CCCCeeecCCCCcCCCceeEEEEEe-----------ccEEEEeeCc
Q 001621 700 SSENMISSSPWHLKKKVIAISMEVI-----------DSVRLYSRKS 734 (1043)
Q Consensus 700 ~~g~~l~~~~~~~~~~~~a~~~~v~-----------~~irl~~~~~ 734 (1043)
.+--......+..+....+..|... +.+|+++.++
T Consensus 653 tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 653 TTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred hhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 8744443333344444444444333 6667766544
No 476
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=45.72 E-value=52 Score=37.88 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCC----CceEEEecCCC---CCeE-EEEEecCCCEEEEEECCCcEEEEEC
Q 001621 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGD----GIEGLLISPSQ---LPYK-NLEFLQNQGFLISITNDNEIQVWSL 105 (1043)
Q Consensus 34 ~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~----~~~~~~~~~~~---~~V~-~l~Fs~d~~~Lvs~s~d~~I~vWdl 105 (1043)
.++.|..+-.+|+|++|.+-+. .++.|++.+ +.+.+...... ..|+ .+.....+.-|+.++.||-|.-|=-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Q ss_pred CCCceeEEeec-------CCCEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCC
Q 001621 106 ESRSLACCLKW-------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1043)
Q Consensus 106 ~t~~~l~~~~~-------~~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1043)
..+..-..+.+ +..|..+.-....+-++.=..+|++.++.-..++..+. ..-...
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~------------------~~~~~~ 359 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF------------------ERAYQA 359 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh------------------hhhhcC
Q ss_pred eEEEEecCCCCCCEEEEEECCCeEEEEEccCC
Q 001621 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1043)
Q Consensus 179 V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~ 210 (1043)
+.-++++|. +. .+..+..|.++++-+++.
T Consensus 360 ~~~~~~Sp~--~~-~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 360 PQLVAMSPN--QA-YLLSEDQGKIRLAQLENR 388 (733)
T ss_pred cceeeeCcc--cc-hheeecCCceEEEEecCC
No 477
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=44.24 E-value=5.5e+02 Score=29.49 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCeEEEEEecCCCEEEEEE-----------CCC-cEEEEECCC--Cce--eEEee-cCCCEEEEEEeCCCCEEEEEeCC
Q 001621 77 LPYKNLEFLQNQGFLISIT-----------NDN-EIQVWSLES--RSL--ACCLK-WESNITAFSVISGSHFMYIGDEN 138 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s-----------~d~-~I~vWdl~t--~~~--l~~~~-~~~~Vtav~~sp~~~~l~vG~~d 138 (1043)
.....|+|.+++..+|+-. ..+ .|.+++-.. |+. ...+. .-...+.+++.+++ |+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 3456778888865444432 122 677776443 332 22222 22456788998888 6666544
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=43.41 E-value=5.1e+02 Score=28.93 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCE------------EEEEEcCCcEEEEcC--CCc-----eEEEe-cCCCCCeEEEEEecC--CCEEEE
Q 001621 36 ATASILAFDHIQRL------------LAIATLDGRIKVIGG--DGI-----EGLLI-SPSQLPYKNLEFLQN--QGFLIS 93 (1043)
Q Consensus 36 ~~v~~lafsp~g~l------------LAvgt~dG~I~v~~~--~~~-----~~~~~-~~~~~~V~~l~Fs~d--~~~Lvs 93 (1043)
+.++-+.|+..+.. +..++.||+|.=|.. ... ..++. .......+.|++..+ +.+|.+
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 45777777654433 456789999999973 111 11221 112456778888754 567888
Q ss_pred EE-CCCcEEEEECCCCcee--EEeecC--------C---------CEEEEEEeCCCCEEEEEeCCCcEEEEEEeCCCCeE
Q 001621 94 IT-NDNEIQVWSLESRSLA--CCLKWE--------S---------NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1043)
Q Consensus 94 ~s-~d~~I~vWdl~t~~~l--~~~~~~--------~---------~Vtav~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l 153 (1043)
++ ..++|.|+|-.-.++. ..+.-+ - .|+-..-+++.+.-..|...|-|.+++.+. .+
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l 233 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QL 233 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cE
Confidence 87 4689999986544322 111111 0 122222233333333444456665554432 23
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEecCCCC----CCEEEEE-ECCCeEEEEEccCCeEEEEe
Q 001621 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS----GNRVLIA-YENALVILWDVSEAQIIFVG 216 (1043)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~----g~~ll~~-~~dg~I~lWd~~~~~~~~~~ 216 (1043)
. .++. +.+....-+.|+..|.+- |. ||+| +.||+|..||..+++.+-.+
T Consensus 234 ~---~r~a----------s~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 234 L---RRVA----------SSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred E---EEec----------cCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCceeeee
Confidence 2 1111 122334456666655432 44 6665 67999999999888766443
No 479
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.36 E-value=64 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEEeCCCeEEEEEcCCceEEEEeec
Q 001621 617 KLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1043)
Q Consensus 617 ~lA~Gs~dg~V~vwD~~~~~~l~~~~~ 643 (1043)
.+.+++.||.|.-+|.+++++++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356679999999999999999988665
No 480
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=43.29 E-value=25 Score=43.77 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=67.3
Q ss_pred cccCCCCeEEEEEcC-CCCEEEEEEcCCcEEEEcCCCceE--------EEecCCCCC---eEEEEEecCCCEEEEEECCC
Q 001621 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEG--------LLISPSQLP---YKNLEFLQNQGFLISITNDN 98 (1043)
Q Consensus 31 ~~G~~~~v~~lafsp-~g~lLAvgt~dG~I~v~~~~~~~~--------~~~~~~~~~---V~~l~Fs~d~~~Lvs~s~d~ 98 (1043)
..|+++.|-.++|-. +.-.++ -.-|...||+++-.+. ...-+.... |.-+.|.++.-++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 358999999999933 111222 2337788998653221 111122233 33444555766666677788
Q ss_pred cEEEEECCCC--ceeEEe-ec-------C-CCEEEEEEeCCCCEEEEEeCCCcEEEEEEe
Q 001621 99 EIQVWSLESR--SLACCL-KW-------E-SNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1043)
Q Consensus 99 ~I~vWdl~t~--~~l~~~-~~-------~-~~Vtav~~sp~~~~l~vG~~dG~v~v~~~d 147 (1043)
+|++-++++. +++... .+ . +-+---.++|||..++.+..||.++.|.+-
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 8888766553 222221 00 1 111122379999999999999999888653
No 481
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.92 E-value=21 Score=35.51 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHH
Q 001621 992 VAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANE 1030 (1043)
Q Consensus 992 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~ 1030 (1043)
+....=..+.||||||..|=+|.+.+-...+-|-+.|+.
T Consensus 152 iLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK 190 (198)
T KOG0861|consen 152 ILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKK 190 (198)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 344455667899999999999999999999999888875
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=42.71 E-value=4.3e+02 Score=31.38 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=39.4
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEee------cCCCEEEEEEeCCC------CEEEEEe
Q 001621 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCLK------WESNITAFSVISGS------HFMYIGD 136 (1043)
Q Consensus 77 ~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~--l~~~~------~~~~Vtav~~sp~~------~~l~vG~ 136 (1043)
..-+.|+|.||+..||+--..|+|++++-.++.. +..+. .++....|+++|+- .++|+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 3467899999976555544469999998765532 21111 24667889999874 4677654
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=41.14 E-value=6.3e+02 Score=29.28 Aligned_cols=152 Identities=13% Similarity=0.206 Sum_probs=83.7
Q ss_pred cCCCEEEEEECCCcEEEEECCCCceeEEeecCCCEEEEEEeC----CCCE--EEEEeC-C---CcEEEEEEeCCCCeEee
Q 001621 86 QNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS----GSHF--MYIGDE-N---GLMSVIKYDADEGKLFQ 155 (1043)
Q Consensus 86 ~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp----~~~~--l~vG~~-d---G~v~v~~~d~~~~~l~~ 155 (1043)
|.+.+++....++-+.++|+.- +.+..+. .+.++.+.+-. .++. |++++. + .+|++|.++...+.+..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4556788888889999999964 4555553 34555554432 2332 344443 2 35899999877666652
Q ss_pred eceeecccccccccCCC-CCCCCCeEEEEe--cCCCCCC-EEEEEECCCeEEEEEcc---CCe----EEEEeCCcccccc
Q 001621 156 LPYNISADALSEKAGFP-LLSHQPVVGVLP--HPNSSGN-RVLIAYENALVILWDVS---EAQ----IIFVGGGKDLQLK 224 (1043)
Q Consensus 156 ~~~~i~~~~~~~~~~~~-~~~~~~V~sl~~--sp~d~g~-~ll~~~~dg~I~lWd~~---~~~----~~~~~~~~~~~~~ 224 (1043)
+.... .+ ......+..+++ +|. .|. ++++...+|.+.-|-+. .+. .++.|..
T Consensus 144 ----v~~~~------~p~~~~~~e~yGlcly~~~~-~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~------ 206 (381)
T PF02333_consen 144 ----VTDPA------APIATDLSEPYGLCLYRSPS-TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV------ 206 (381)
T ss_dssp -----CBTT------C-EE-SSSSEEEEEEEE-TT-T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-------
T ss_pred ----cCCCC------cccccccccceeeEEeecCC-CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC------
Confidence 11000 00 012234666665 454 354 34556788988777764 332 3343321
Q ss_pred cccccCCCCCCCCcccCccCCCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCCC
Q 001621 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1043)
Q Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~t 281 (1043)
...+-.+... .....|..|-+|--|.-++.+.
T Consensus 207 ------------------------~sQ~EGCVVD-De~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 207 ------------------------GSQPEGCVVD-DETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp ------------------------SS-EEEEEEE-TTTTEEEEEETTTEEEEEESSC
T ss_pred ------------------------CCcceEEEEe-cccCCEEEecCccEEEEEecCC
Confidence 2345565555 6777899999998887777653
No 484
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=40.85 E-value=2e+02 Score=32.20 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEECCCCceeEEeecCCC---EEEEEEeCC
Q 001621 100 IQVWSLESRSLACCLKWESN---ITAFSVISG 128 (1043)
Q Consensus 100 I~vWdl~t~~~l~~~~~~~~---Vtav~~sp~ 128 (1043)
|.|.|+.||..++.+.+++. +..+++-|.
T Consensus 284 v~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 284 VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 67889999999999888754 455566555
No 485
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.57 E-value=6.1e+02 Score=29.01 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCcEEEEcCCCceEEEecCCC---CCeEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEeecCC-CEEE
Q 001621 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQ---LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES-NITA 122 (1043)
Q Consensus 47 g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~---~~V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~l~~~~~~~-~Vta 122 (1043)
...+.+++.+|.|.-++..+...++..... ..+..-.+..+ +.|+.++.++.+...|..+|+.+......+ ....
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-GKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-CeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEEeCCCCeEeeeceeecccccccccCCCCCCCCCeEEEEecCCCCCCEEEEEEC--CC
Q 001621 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NA 200 (1043)
Q Consensus 123 v~~sp~~~~l~vG~~dG~v~v~~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~--dg 200 (1043)
-..-.....++.++.+| ++..++.+.+++. |... .+.. ......-.+... ++. +.++.. ++
T Consensus 147 ~~~v~~~~~v~~~s~~g--~~~al~~~tG~~~---W~~~---------~~~~-~~~~~~~~~~~~-~~~-vy~~~~~~~~ 209 (370)
T COG1520 147 SPPVVGDGTVYVGTDDG--HLYALNADTGTLK---WTYE---------TPAP-LSLSIYGSPAIA-SGT-VYVGSDGYDG 209 (370)
T ss_pred cCcEEcCcEEEEecCCC--eEEEEEccCCcEE---EEEe---------cCCc-cccccccCceee-cce-EEEecCCCcc
Q ss_pred eEEEEEccCCeEE
Q 001621 201 LVILWDVSEAQII 213 (1043)
Q Consensus 201 ~I~lWd~~~~~~~ 213 (1043)
.+.-.|..++...
T Consensus 210 ~~~a~~~~~G~~~ 222 (370)
T COG1520 210 ILYALNAEDGTLK 222 (370)
T ss_pred eEEEEEccCCcEe
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=39.94 E-value=56 Score=22.55 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceEEEE
Q 001621 614 SGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1043)
Q Consensus 614 dg~~lA~Gs~dg~V~vwD~~~~~~l~~ 640 (1043)
+| .|.+++.+|.+..+|.++++++++
T Consensus 6 ~~-~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DG-TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CC-EEEEEcCCCEEEEEEcccCcEEEE
Confidence 44 578889999999999999988875
No 487
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.36 E-value=63 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCcEEEEEeCCCeEEEE
Q 001621 605 PVRALQFTSSGAKLAVGFECGRVAVL 630 (1043)
Q Consensus 605 ~Vt~la~s~dg~~lA~Gs~dg~V~vw 630 (1043)
.|++|+.++. ++|+++.-+.||+|
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEec
Confidence 4778887743 79999999999987
No 488
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=38.91 E-value=75 Score=28.25 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHH---HHhhcccccc
Q 001621 991 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1042 (1043)
Q Consensus 991 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~---~~~~~~k~~~ 1042 (1043)
......++.+.|+.+|+-+=.++.++|...|++.+..|.++. ++++++.||+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999886 5677888986
No 489
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=38.28 E-value=9e+02 Score=33.33 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=46.0
Q ss_pred ccCCCCcE-EEEEeCCCcEEEEeCCCCC--ceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEec
Q 001621 490 KCHSVDRV-YLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1043)
Q Consensus 490 ~~s~~~~~-l~tg~~DgtVriWD~~~~~--l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~ 566 (1043)
...++++. +.++-..-++.+|++.... +.+-..+ .+.+.+-.....+|.++++ .|.+++.+|.++.=++.
T Consensus 444 Sv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~-----~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 444 SVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTK-----TLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLP 516 (1774)
T ss_pred cccCCCceeeeecCCCcceeeeccCccccccCcccee-----eeeccCCchhhhheeecCC--eEEEEeCCCCEEecccc
Confidence 34677776 5666666678999987653 1111111 1223333447888999887 68899999998877765
Q ss_pred C
Q 001621 567 G 567 (1043)
Q Consensus 567 ~ 567 (1043)
.
T Consensus 517 ~ 517 (1774)
T PF11725_consen 517 A 517 (1774)
T ss_pred c
Confidence 4
No 490
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=37.15 E-value=92 Score=25.89 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhccc
Q 001621 989 ASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRK 1039 (1043)
Q Consensus 989 ~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k 1039 (1043)
.-..+..+...|.+-.|.|++++.|..++.+. ...++.++++|+.||
T Consensus 20 ~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~----l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 20 TEEIGAATLEDLRSQREQLKRVRDKLDDIDSN----LPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHccC
Confidence 34678888999999999999999999988765 467888999988775
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.81 E-value=71 Score=21.65 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCcEEEE
Q 001621 37 TASILAFDHIQRLLAIATLDGRIKVI 62 (1043)
Q Consensus 37 ~v~~lafsp~g~lLAvgt~dG~I~v~ 62 (1043)
.+..+|.+++|+++++=+...+|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 35678888888888777777787765
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=35.38 E-value=4.7e+02 Score=29.62 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=37.0
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEee-----cCCCEEEEEEeCC---CCEEEEEeC
Q 001621 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRSL---ACCLK-----WESNITAFSVISG---SHFMYIGDE 137 (1043)
Q Consensus 79 V~~l~Fs~d~~~Lvs~s~d~~I~vWdl~t~~~---l~~~~-----~~~~Vtav~~sp~---~~~l~vG~~ 137 (1043)
-+.|+|.||+. |+.+...|.|.+++ ..+.. +..+. .+.....++++|+ ..++|+...
T Consensus 4 P~~~a~~pdG~-l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEEETTSC-EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred ceEEEEeCCCc-EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 46899999965 55567799999999 44443 33331 2356889999995 456666554
No 493
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.17 E-value=2.1e+02 Score=33.36 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCceeeeeeccceeeEEecCCCCCeEEEEEecCCCeEEEEecCccEEEEEecC
Q 001621 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1043)
Q Consensus 504 DgtVriWD~~~~~l~~l~~l~~~~~~v~~~~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~ 567 (1043)
.|-+.-|-++..... .. ..+++ ...++|.++.||+|++.||+.-.+.+|.++.+..
T Consensus 42 SggatgvvvkgpndD----Vp---iSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDD----VP---ISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred cCCeeEEEEeCCCCC----CC---ceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence 355777877655411 10 01222 2346999999999999999999999999999854
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=34.52 E-value=62 Score=39.36 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcEEEEEeCCCeEEEEEcCCceE--EEEeecCCCCCCCeEEEEEEeecCCccccCCCCCCCCCCCCCCCce
Q 001621 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSV--LFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEE 683 (1043)
Q Consensus 606 Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~~~--l~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~p~~~~~~~~~~~~~~ 683 (1043)
++++.-.|-|+.++.|..||+|++++....+. +.+. ..|-..+.|..+|
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~------~~p~~nlv~tnhg----------------------- 67 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE------AKPKENLVFTNHG----------------------- 67 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh------cCCccceeeeccc-----------------------
Q ss_pred EEEEeccCceEEEE
Q 001621 684 VIIVLFKDAKISIV 697 (1043)
Q Consensus 684 ~l~~gt~dg~I~~~ 697 (1043)
|++.|+|.++..|
T Consensus 68 -l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 68 -LVTATSDRRALAW 80 (1636)
T ss_pred -eEEEeccchhhee
No 495
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.18 E-value=60 Score=33.85 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhccccc
Q 001621 988 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWW 1041 (1043)
Q Consensus 988 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~ 1041 (1043)
+.-.++.+.=+.+..|||.|+.+...+-+|...++-..+-|+-|..+.=..|||
T Consensus 145 ~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 145 DVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444677777788889999999999999999999999999999998888888877
No 496
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.63 E-value=10 Score=43.98 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=69.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeeeccceeeEEec-CCCCCeEEEEEecCCCeEEEEecCccEEEEEecCCCccccee
Q 001621 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVA-GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1043)
Q Consensus 497 ~l~tg~~DgtVriWD~~~~~l~~l~~l~~~~~~v~~~-~~~~~V~~l~fspd~~~La~g~~dG~V~i~~~~~~~~~~~~~ 575 (1043)
.++.+...+.+.+||+.+..-+ .+ ++. .|+.+. +.|++-+..++.|...|.++||+-...+..
T Consensus 89 lavlAek~~piylwd~n~eytq---qL-------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i---- 152 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQ---QL-------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI---- 152 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHH---HH-------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhh----
Confidence 3445566789999999875411 11 111 122222 689999999999999999999998764321
Q ss_pred eeccCCCceeeecCCCcceeeEEecCCCCCEEEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001621 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1043)
Q Consensus 576 f~~~~~~~~~~~~~~~~~~~~~~l~~h~~~Vt~la~s~dg~~lA~Gs~dg~V~vwD~~~~ 635 (1043)
...-.|.-+++++++.+.+ +++.++.|.++.+-...+.
T Consensus 153 ---------------------iv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qege 190 (615)
T KOG2247|consen 153 ---------------------IVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGE 190 (615)
T ss_pred ---------------------hhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccc
Confidence 1123388999999999999 4788888877666655443
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=31.87 E-value=1.3e+02 Score=38.35 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=60.0
Q ss_pred ccCccceeeecccCCCCeEEEEEcCCCCEEEEEEcCCcEEEEcCCCceEEE--------------------ecCCCCCeE
Q 001621 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL--------------------ISPSQLPYK 80 (1043)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~lafsp~g~lLAvgt~dG~I~v~~~~~~~~~~--------------------~~~~~~~V~ 80 (1043)
+..+.++..-..-.++.|.+++...-+.+++.+..||+|.++|....+.+. .++.-.++.
T Consensus 245 ~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~ 324 (753)
T PF11635_consen 245 PPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPL 324 (753)
T ss_pred CCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCc
Confidence 444556666666678889999998889999999999999999875543221 122222455
Q ss_pred EEEEecCCCEEEEEECCCcEE
Q 001621 81 NLEFLQNQGFLISITNDNEIQ 101 (1043)
Q Consensus 81 ~l~Fs~d~~~Lvs~s~d~~I~ 101 (1043)
.++|||++.-+|..+.++.+.
T Consensus 325 ~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 325 HVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred eEEECcccceEEEEecCCCce
Confidence 688999998889998888865
No 498
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=31.80 E-value=9.6e+02 Score=28.67 Aligned_cols=138 Identities=10% Similarity=0.045 Sum_probs=77.4
Q ss_pred EECCCcEEEEECCCCceeEEeecCCCEEEEEEeCCCC-------EEEEEeCCCcEEEEEEeCC--CCeEeeeceeecccc
Q 001621 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDAD--EGKLFQLPYNISADA 164 (1043)
Q Consensus 94 ~s~d~~I~vWdl~t~~~l~~~~~~~~Vtav~~sp~~~-------~l~vG~~dG~v~v~~~d~~--~~~l~~~~~~i~~~~ 164 (1043)
+...+.+.--|++.|+.+-++..+..| -+.+.|.-+ .-++|.++..| +.+|+. ..++....++ ++
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv--FrIDPR~~gNKi~v~esK---dY 559 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV--FRIDPRARGNKIKVVESK---DY 559 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccce--EEecccccCCceeeeeeh---hc
Confidence 445677888899999999998887776 667777643 24678777755 555542 2222210000 00
Q ss_pred cccccCCCCCCCCCeEEEEecCCCCCCEEEEEECCCeEEEEEccCCeEEEEeCCcccccccccccCCCCCCCCcccCccC
Q 001621 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1043)
Q Consensus 165 ~~~~~~~~~~~~~~V~sl~~sp~d~g~~ll~~~~dg~I~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 244 (1043)
.. +. ...|..-.. .| ++++|+..|-|+|||--..+....+. +-
T Consensus 560 ~t------Kn---~Fss~~tTe--sG-yIa~as~kGDirLyDRig~rAKtalP-------------------~l------ 602 (776)
T COG5167 560 KT------KN---KFSSGMTTE--SG-YIAAASRKGDIRLYDRIGKRAKTALP-------------------GL------ 602 (776)
T ss_pred cc------cc---ccccccccc--Cc-eEEEecCCCceeeehhhcchhhhcCc-------------------cc------
Confidence 00 00 111111111 36 59999999999999953322211111 11
Q ss_pred CCCCCCCeEEEEEecCCCCEEEEEEcCCcEEEEcCC
Q 001621 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1043)
Q Consensus 245 ~~~~~~~V~sl~w~sp~g~~l~tg~~DG~I~iWd~~ 280 (1043)
...|.-+.-. .+|.+|++.+. ..|.+-|++
T Consensus 603 ----G~aIk~idvt-a~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 603 ----GDAIKHIDVT-ANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ----ccceeeeEee-cCCcEEEEeec-ceEEEEecc
Confidence 2334455554 78888776664 466666653
No 499
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=31.38 E-value=2.4e+02 Score=30.70 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=44.3
Q ss_pred cCCCCeEEEEE------cCC-CCEEEEEEcCCcEEEEcCCCceEEEecCCC-CCeE---EEEEe-cCCCEEEEEECCCcE
Q 001621 33 GIPATASILAF------DHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYK---NLEFL-QNQGFLISITNDNEI 100 (1043)
Q Consensus 33 G~~~~v~~laf------sp~-g~lLAvgt~dG~I~v~~~~~~~~~~~~~~~-~~V~---~l~Fs-~d~~~Lvs~s~d~~I 100 (1043)
..+..|+|++- +.+ -+.|++||.+|.|+|.|......+....-. .|+. .=.|. -| -+++.++.||.|
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devd-yRI~Va~Rdg~i 252 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVD-YRIVVACRDGKI 252 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccc-eEEEEEeCCCEE
Confidence 34556888876 222 368999999999999998876665443322 2331 11232 33 567888888887
Q ss_pred EE
Q 001621 101 QV 102 (1043)
Q Consensus 101 ~v 102 (1043)
.+
T Consensus 253 y~ 254 (257)
T PF14779_consen 253 YT 254 (257)
T ss_pred EE
Confidence 65
No 500
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.93 E-value=1.1e+02 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhchhhHHHHHHHHHHHhhccccc
Q 001621 993 AAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWW 1041 (1043)
Q Consensus 993 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~a~~f~~~a~~~~~~~~~~k~~ 1041 (1043)
.++.+.++.+..+++..++.+.+.++.. =..+.++|-+--++-||-
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~---i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKD---IKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777887777665 345788888888888883
Done!