Query 001622
Match_columns 1042
No_of_seqs 216 out of 304
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 99.4 3.9E-12 8.5E-17 144.3 15.9 217 800-1042 9-250 (533)
2 KOG2032 Uncharacterized conser 99.1 4.2E-09 9.1E-14 120.1 21.8 470 428-1017 22-525 (533)
3 KOG1824 TATA-binding protein-i 97.9 0.058 1.3E-06 66.9 36.6 68 3-70 440-510 (1233)
4 KOG2171 Karyopherin (importin) 97.8 0.3 6.6E-06 62.4 46.1 424 3-505 41-548 (1075)
5 KOG2171 Karyopherin (importin) 97.4 0.8 1.7E-05 58.7 46.5 458 321-879 119-622 (1075)
6 PF01602 Adaptin_N: Adaptin N 95.5 5.6 0.00012 48.3 27.5 68 745-819 306-374 (526)
7 KOG1824 TATA-binding protein-i 95.3 12 0.00026 47.6 50.0 652 3-814 10-719 (1233)
8 PF05004 IFRD: Interferon-rela 93.6 15 0.00033 41.9 23.2 187 278-478 85-285 (309)
9 PF01602 Adaptin_N: Adaptin N 91.7 38 0.00082 41.1 35.9 392 292-818 53-448 (526)
10 PTZ00429 beta-adaptin; Provisi 91.6 50 0.0011 42.3 35.5 188 563-821 100-292 (746)
11 KOG1991 Nuclear transport rece 91.2 21 0.00046 45.8 21.5 134 496-677 391-531 (1010)
12 KOG2274 Predicted importin 9 [ 90.9 58 0.0013 41.7 36.8 81 743-826 708-790 (1005)
13 KOG1248 Uncharacterized conser 87.9 1.1E+02 0.0023 40.6 44.7 209 564-826 693-909 (1176)
14 PF14500 MMS19_N: Dos2-interac 87.8 27 0.00058 39.0 17.4 110 761-875 101-220 (262)
15 KOG1061 Vesicle coat complex A 86.9 69 0.0015 40.3 21.4 205 549-806 224-445 (734)
16 PF12348 CLASP_N: CLASP N term 85.3 57 0.0012 35.0 18.2 122 646-826 91-216 (228)
17 PF02985 HEAT: HEAT repeat; I 83.7 2 4.4E-05 31.3 4.1 31 40-70 1-31 (31)
18 KOG0212 Uncharacterized conser 82.3 1.3E+02 0.0028 36.8 22.2 212 646-941 81-303 (675)
19 PF10350 DUF2428: Putative dea 75.1 68 0.0015 35.6 14.6 143 776-936 88-247 (255)
20 COG5215 KAP95 Karyopherin (imp 74.4 2.2E+02 0.0048 35.0 32.5 209 334-570 380-602 (858)
21 PF10508 Proteasom_PSMB: Prote 72.0 2.5E+02 0.0053 34.5 29.3 311 298-678 55-366 (503)
22 PF10363 DUF2435: Protein of u 71.8 26 0.00057 32.6 8.7 79 744-826 5-83 (92)
23 PF12348 CLASP_N: CLASP N term 70.6 1.1E+02 0.0024 32.7 14.8 151 742-932 53-206 (228)
24 PF13513 HEAT_EZ: HEAT-like re 69.7 8.4 0.00018 31.6 4.5 52 13-64 2-53 (55)
25 KOG2160 Armadillo/beta-catenin 68.3 14 0.00031 42.3 7.4 150 426-600 132-285 (342)
26 KOG1241 Karyopherin (importin) 66.6 3.6E+02 0.0079 34.3 32.5 341 280-678 324-687 (859)
27 PF12755 Vac14_Fab1_bd: Vacuol 65.8 31 0.00066 32.5 7.9 68 736-805 21-88 (97)
28 PF02985 HEAT: HEAT repeat; I 65.1 7.2 0.00016 28.4 2.9 24 654-677 5-28 (31)
29 KOG0213 Splicing factor 3b, su 64.8 3.9E+02 0.0084 34.0 26.5 93 726-826 909-1001(1172)
30 KOG1525 Sister chromatid cohes 62.2 2.1E+02 0.0045 39.0 17.1 76 562-677 253-328 (1266)
31 PF14500 MMS19_N: Dos2-interac 62.1 60 0.0013 36.2 10.8 62 757-820 55-117 (262)
32 PF11864 DUF3384: Domain of un 61.6 3.6E+02 0.0079 32.6 25.5 110 439-578 8-117 (464)
33 PLN03076 ARF guanine nucleotid 61.2 3.9E+02 0.0085 37.9 19.9 320 430-791 1149-1509(1780)
34 PF12460 MMS19_C: RNAPII trans 60.0 3.6E+02 0.0078 32.0 29.2 322 392-816 61-396 (415)
35 PF12717 Cnd1: non-SMC mitotic 59.6 39 0.00084 35.2 8.3 84 544-677 8-91 (178)
36 PTZ00429 beta-adaptin; Provisi 59.3 5E+02 0.011 33.5 38.0 416 300-859 119-549 (746)
37 PF03378 CAS_CSE1: CAS/CSE pro 58.8 3.9E+02 0.0085 32.1 19.1 86 738-826 197-283 (435)
38 KOG2122 Beta-catenin-binding p 58.5 2.5E+02 0.0055 38.3 16.2 31 646-676 482-512 (2195)
39 PF13646 HEAT_2: HEAT repeats; 56.4 18 0.00039 32.2 4.6 56 2-67 3-59 (88)
40 PF10363 DUF2435: Protein of u 54.7 31 0.00066 32.2 5.8 64 5-69 10-73 (92)
41 cd00197 VHS_ENTH_ANTH VHS, ENT 52.2 23 0.0005 34.0 4.8 66 2-67 41-114 (115)
42 KOG1820 Microtubule-associated 51.6 3.4E+02 0.0074 35.3 16.0 205 564-826 249-454 (815)
43 PF14664 RICTOR_N: Rapamycin-i 51.4 1.8E+02 0.004 34.1 12.9 181 111-319 122-337 (371)
44 KOG0212 Uncharacterized conser 48.6 6.2E+02 0.013 31.4 18.6 264 4-324 173-474 (675)
45 KOG1062 Vesicle coat complex A 48.2 7.2E+02 0.016 32.0 20.4 103 745-878 353-456 (866)
46 cd00020 ARM Armadillo/beta-cat 48.0 31 0.00067 32.1 4.9 69 2-70 11-80 (120)
47 KOG1077 Vesicle coat complex A 47.6 7E+02 0.015 31.7 22.5 78 782-874 402-489 (938)
48 PF12717 Cnd1: non-SMC mitotic 47.5 34 0.00074 35.6 5.5 65 2-69 29-93 (178)
49 KOG2023 Nuclear transport rece 46.4 87 0.0019 38.9 9.1 194 646-865 87-293 (885)
50 COG5181 HSH155 U2 snRNP splice 46.3 6.9E+02 0.015 31.3 20.8 335 256-677 537-911 (975)
51 PF01347 Vitellogenin_N: Lipop 45.5 3E+02 0.0065 34.4 14.5 165 295-506 378-553 (618)
52 KOG1240 Protein kinase contain 45.3 9.5E+02 0.021 32.6 21.4 140 653-816 582-727 (1431)
53 cd03568 VHS_STAM VHS domain fa 45.3 2.2E+02 0.0048 28.7 10.8 92 722-816 19-112 (144)
54 KOG0166 Karyopherin (importin) 44.9 1.6E+02 0.0034 36.1 11.0 80 646-739 408-489 (514)
55 COG5181 HSH155 U2 snRNP splice 43.4 7.6E+02 0.017 30.9 18.2 93 726-826 714-806 (975)
56 PF10274 ParcG: Parkin co-regu 41.5 1.3E+02 0.0029 31.7 8.7 81 742-826 38-119 (183)
57 KOG2137 Protein kinase [Signal 41.3 7.5E+02 0.016 31.4 16.1 126 299-446 368-495 (700)
58 cd03572 ENTH_epsin_related ENT 40.7 49 0.0011 32.6 5.0 67 1-67 41-118 (122)
59 KOG1059 Vesicle coat complex A 40.3 8E+02 0.017 31.3 15.9 228 562-879 138-371 (877)
60 PRK09687 putative lyase; Provi 39.1 6.1E+02 0.013 28.5 15.8 164 657-873 99-262 (280)
61 KOG0946 ER-Golgi vesicle-tethe 38.6 5.7E+02 0.012 32.9 14.4 84 726-816 112-197 (970)
62 PF11707 Npa1: Ribosome 60S bi 38.5 6.7E+02 0.014 28.8 16.7 238 744-1019 58-317 (330)
63 PF00790 VHS: VHS domain; Int 37.6 3.7E+02 0.008 26.8 11.0 92 722-816 24-120 (140)
64 PF05918 API5: Apoptosis inhib 36.4 9.4E+02 0.02 30.0 17.6 165 647-880 38-210 (556)
65 PF10274 ParcG: Parkin co-regu 35.3 52 0.0011 34.7 4.5 116 7-125 47-163 (183)
66 cd03569 VHS_Hrs_Vps27p VHS dom 35.2 4E+02 0.0086 26.8 10.7 88 726-816 27-116 (142)
67 cd00020 ARM Armadillo/beta-cat 35.0 62 0.0013 30.0 4.8 65 3-67 54-119 (120)
68 COG5101 CRM1 Importin beta-rel 34.2 2.2E+02 0.0048 35.3 9.9 151 268-451 487-652 (1053)
69 KOG2022 Nuclear transport rece 33.8 1.2E+03 0.026 30.5 29.3 277 465-788 587-883 (982)
70 KOG0946 ER-Golgi vesicle-tethe 33.7 1.1E+03 0.024 30.5 15.7 76 782-876 20-95 (970)
71 cd03561 VHS VHS domain family; 33.3 87 0.0019 31.0 5.6 65 3-68 42-112 (133)
72 cd03569 VHS_Hrs_Vps27p VHS dom 32.3 90 0.002 31.5 5.6 65 3-68 46-114 (142)
73 cd03568 VHS_STAM VHS domain fa 32.0 90 0.002 31.6 5.5 65 3-68 42-110 (144)
74 PF13251 DUF4042: Domain of un 31.8 39 0.00084 35.6 2.9 57 13-69 1-70 (182)
75 PF12755 Vac14_Fab1_bd: Vacuol 31.7 77 0.0017 29.8 4.7 56 14-69 2-57 (97)
76 PF12397 U3snoRNP10: U3 small 31.6 4.7E+02 0.01 25.1 11.3 72 740-816 4-76 (121)
77 PF12830 Nipped-B_C: Sister ch 30.8 1.7E+02 0.0036 30.8 7.6 69 565-677 5-73 (187)
78 smart00802 UME Domain in UVSB 30.2 2.1E+02 0.0046 27.5 7.4 63 902-977 33-95 (107)
79 COG5116 RPN2 26S proteasome re 29.8 2E+02 0.0043 35.3 8.5 76 312-410 581-657 (926)
80 PF12765 Cohesin_HEAT: HEAT re 29.8 55 0.0012 25.8 2.8 26 38-63 17-42 (42)
81 smart00288 VHS Domain present 29.7 4.8E+02 0.01 25.8 10.2 91 722-815 19-112 (133)
82 KOG2090 Metalloendopeptidase f 29.6 1.1E+02 0.0024 37.7 6.4 77 656-747 104-187 (704)
83 PF08064 UME: UME (NUC010) dom 29.5 2.2E+02 0.0048 27.1 7.5 64 902-978 33-96 (107)
84 PF04003 Utp12: Dip2/Utp12 Fam 29.0 1.8E+02 0.0039 27.4 6.8 52 727-778 17-68 (110)
85 KOG1242 Protein containing ada 28.1 1.3E+03 0.027 28.9 28.3 245 538-829 230-501 (569)
86 KOG1967 DNA repair/transcripti 28.0 1.5E+03 0.033 29.8 18.8 144 728-878 111-270 (1030)
87 KOG0213 Splicing factor 3b, su 27.2 1.5E+03 0.031 29.3 25.3 326 254-676 730-1105(1172)
88 cd03561 VHS VHS domain family; 26.7 6.2E+02 0.014 24.9 10.4 93 722-817 19-115 (133)
89 cd03567 VHS_GGA VHS domain fam 25.8 1.2E+02 0.0027 30.4 5.2 67 2-68 42-116 (139)
90 KOG1240 Protein kinase contain 25.8 1.8E+03 0.04 30.1 23.8 288 206-602 439-730 (1431)
91 cd03567 VHS_GGA VHS domain fam 25.5 7E+02 0.015 25.1 10.7 89 725-816 23-118 (139)
92 smart00288 VHS Domain present 24.8 1.4E+02 0.003 29.7 5.3 66 2-68 41-111 (133)
93 COG5218 YCG1 Chromosome conden 24.3 3.5E+02 0.0076 33.5 9.2 74 563-676 86-159 (885)
94 smart00638 LPD_N Lipoprotein N 24.1 1.4E+03 0.031 28.1 21.1 161 303-510 344-513 (574)
95 KOG1241 Karyopherin (importin) 23.8 1.7E+03 0.036 28.8 33.4 487 460-1035 123-665 (859)
96 smart00802 UME Domain in UVSB 23.8 6.3E+02 0.014 24.3 9.4 72 430-524 27-98 (107)
97 KOG2062 26S proteasome regulat 22.2 3.8E+02 0.0083 34.1 9.2 81 388-502 569-649 (929)
98 KOG2122 Beta-catenin-binding p 21.5 2.4E+03 0.052 29.9 16.8 133 901-1040 314-493 (2195)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.9e-12 Score=144.27 Aligned_cols=217 Identities=12% Similarity=0.006 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHHhhhhcccccccccccccCCCChhh----HHHHhccCcchHHHHHHHHHHHhccC
Q 001622 800 HLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQT 875 (1042)
Q Consensus 800 ~~r~~~l~aI~lLa~~h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~----~W~al~~~~~l~~~vL~~LL~~L~~~ 875 (1042)
++-+....++.++...|.-.++. .+. ..++|.++ .|..+.-.+....++++.++..+..
T Consensus 9 svlqa~qdsv~l~h~~h~~a~~~-~~~---------------s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~- 71 (533)
T KOG2032|consen 9 SVLEARQDSVVLLHVRHQTAKQA-VIT---------------AIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR- 71 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHH---------------cccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-
Confidence 34455566777888888777776 777 78899887 7999999999999999999988776
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCC-------
Q 001622 876 PFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG------- 948 (1042)
Q Consensus 876 p~~~~~~~~~~~~~~~t~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~~~l~~~~------- 948 (1042)
..+.+ ++..+...++.+.++-||++++|+..+. +.+..|-..|||||.-+|+..++..++..|.
T Consensus 72 ~~~a~-------sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r 142 (533)
T KOG2032|consen 72 EGFAE-------SLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSR 142 (533)
T ss_pred hhhhh-------hhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHH
Confidence 22211 1222222467788999999999999998 9999999999999999999999999986552
Q ss_pred ----------CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCC-CC---chhhhHHhHHHHHHHHHhhCChhHHHHHHHH
Q 001622 949 ----------QHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLIL 1014 (1042)
Q Consensus 949 ----------~~~P~~~aleAlk~lL~~~g~~~~~~~l~~~~~-W~---~~~~~~~GV~lLAram~~~~~~~i~~il~~L 1014 (1042)
-..||+.+..+++.+...++.+.+.+..+..++ |+ .+..|+.|++-++|.|..+.++.++.|+.++
T Consensus 143 ~~~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~ 222 (533)
T KOG2032|consen 143 LEDVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQL 222 (533)
T ss_pred HHhHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhc
Confidence 378999999999999999999999999999888 99 9999999999999999999999999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHhhcCcCC
Q 001622 1015 TKSINRQQRFQREAAAAALSEFVRYRFV 1042 (1042)
Q Consensus 1015 ~~~l~s~~~~qRi~a~af~sELL~~~~~ 1042 (1042)
.....|..+.+|++.+|||+|+.+.+.+
T Consensus 223 ~ss~ts~~~~~ritd~Af~ael~~~~~l 250 (533)
T KOG2032|consen 223 LSSITSEKENGRITDIAFFAELKRPKEL 250 (533)
T ss_pred ccccchhcccchHHHHHHHHHHhCcccc
Confidence 9999999999999999999999998753
No 2
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=4.2e-09 Score=120.08 Aligned_cols=470 Identities=24% Similarity=0.172 Sum_probs=301.9
Q ss_pred hccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhcc
Q 001622 428 HVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTV 507 (1042)
Q Consensus 428 ~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L 507 (1042)
+..+.+.|++-+.+....+.++....+.+.-|..+++++.++++...|..|..-. +..+.......+..+++.++-.
T Consensus 22 h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~~a~---sl~~v~~~~a~~~~~~~t~vl~ 98 (533)
T KOG2032|consen 22 HVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREGFAE---SLLEVLHTQALALNACTTLVLV 98 (533)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhhhhh---hhcchhhhHHHHHHHHHHHHHH
Confidence 5566788999999999999999988888888999999999999999888753221 1123334567788999999989
Q ss_pred CCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhH--HHh
Q 001622 508 EPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVE--YQR 585 (1042)
Q Consensus 508 ~P~L~~e~~~~ll~~c~sv~~lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~--hER 585 (1042)
+|.+..+++..+++..--+|+ - .++...-.|..-..+ |+|
T Consensus 99 e~~lti~~g~~v~~lypqlf~--------------l------------------------lLllvscvlg~k~p~~lqa~ 140 (533)
T KOG2032|consen 99 EPKLTIETGNRVMKLYPQLFS--------------L------------------------LLLLVSCVLGLKSPDSLQAL 140 (533)
T ss_pred HHhhhhhcCchHHHhhHHHHH--------------H------------------------HHHHHHHHhhccCcccHHHH
Confidence 999888887776543222222 1 111122222211111 333
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHH-HhhcCccCCChh
Q 001622 586 RRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSE 664 (1042)
Q Consensus 586 eRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg-~l~prC~D~~~~ 664 (1042)
+|-... ..++ +..-++.. +... +..|+|.+.| ..+..|+|-++.
T Consensus 141 ~r~~~~--~al~-~~~~~pc~--------------~~ta------------------tl~cl~lqsa~e~~~~~sde~~~ 185 (533)
T KOG2032|consen 141 SRLEDV--IALL-KSLVAPCH--------------SCTA------------------TLCCLILQSAEEAIQAVSDEVSR 185 (533)
T ss_pred HHHHhH--HHHH-HhhhhHHH--------------HhHH------------------HHHHHHHHHhHHHHHHhhhcccc
Confidence 333322 2233 21111111 1112 3358999999 889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCC---hHHH-H---HHHHHHHccCCh
Q 001622 665 VRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDP---SEVF-N---RIVSSVCILLTK 737 (1042)
Q Consensus 665 ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~-~---~i~~~i~~~L~~ 737 (1042)
+-..+.....|...+.-.++- -+...+.+ ...-+. +..+++. +.-+ . .+++...+..-+
T Consensus 186 ~w~qls~~~~h~~g~trlqr~-m~~~~~~~---~~~il~----------q~~ss~ts~~~~~ritd~Af~ael~~~~~l~ 251 (533)
T KOG2032|consen 186 RWSQLSDNDIHRVGLTRLQRF-MACVQDLE---MGKILA----------QLLSSITSEKENGRITDIAFFAELKRPKELD 251 (533)
T ss_pred hhhhcccCcccHHHHHHHHHH-HHhhCCcc---HHHHHh----------hcccccchhcccchHHHHHHHHHHhCccccc
Confidence 877777777777667654431 11111110 000111 1111111 1111 1 234444444444
Q ss_pred --hHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhh
Q 001622 738 --DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1042)
Q Consensus 738 --~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~ 815 (1042)
.-+.+++..+.+...|++.....-|+.-|-......-.+.... ++.++++|+.+|....+ ..-++++|.+|+.-
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~---~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLN---EEVQLEAMKCLTMV 327 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHH
Confidence 5578999999999999988776666666666665544455345 88999999999988887 45566777777665
Q ss_pred ccchhHHHHHhhhhcccccccccccccCCCChhh----HHHHhccCcchHHHHHHHHHHHhccCCCCCCCC-----CCCC
Q 001622 816 TNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM-----EKGD 886 (1042)
Q Consensus 816 h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~----~W~al~~~~~l~~~vL~~LL~~L~~~p~~~~~~-----~~~~ 886 (1042)
-...+.. .|- .+++|.+- +|..--.+-..+.-+|-.-|.++.+++..+... +-..
T Consensus 328 ~~~~~~~-~l~---------------~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ 391 (533)
T KOG2032|consen 328 LEKASND-DLE---------------SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP 391 (533)
T ss_pred HHhhhhc-chh---------------hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc
Confidence 4333333 444 78888863 999988889999999999999999999877532 2223
Q ss_pred CCCCCCCcccchhhH--HHHHHHHHHHHccCCcchHHHHHHhhhHHHHHH--HHHHhh---hccCCCCCCCCh--HHHHH
Q 001622 887 YSSHSADTWIDDDIL--QAAILALTAFFRGGGKVGKKAVEKSYAPVLAAL--TLQLGS---CHGLASSGQHEP--LRAIL 957 (1042)
Q Consensus 887 ~~~~~t~~~~~~~~~--laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aL--Llql~~---~~~l~~~~~~~P--~~~al 957 (1042)
+..|-.++ .| .+|-.+..-+.+-+ -+++++..+|++.+=.. -.|..| |+++. +..| .-..+
T Consensus 392 lllhl~d~-----~p~va~ACr~~~~~c~p~--l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~---~i~~d~l~~~~ 461 (533)
T KOG2032|consen 392 LLLHLQDP-----NPYVARACRSELRTCYPN--LVRKELYHLFQESLDTDMARFQAFYNQWCIQLN---HIHPDILMLLL 461 (533)
T ss_pred ceeeeCCC-----ChHHHHHHHHHHHhcCch--hHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHh---hhCHHHHHHHH
Confidence 45555543 35 67888888888877 99999999999444333 333333 33443 2445 45788
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhcCCCC---chhhhHHhHHHHHHHHHhhCChhHHHHHHHHHHh
Q 001622 958 TSFQAFCECVG-DLEMRKILARDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKS 1017 (1042)
Q Consensus 958 eAlk~lL~~~g-~~~~~~~l~~~~~W~---~~~~~~~GV~lLAram~~~~~~~i~~il~~L~~~ 1017 (1042)
.+.+.+|++++ ...+...+.....|+ ....+.-|+..|+.++...+.+..+.+.....+.
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~a 525 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKA 525 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHH
Confidence 89999999988 455667777778898 4555667777888889888766666665554444
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.90 E-value=0.058 Score=66.93 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=59.3
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHhhcc
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQN---LAVQKAISELIVVMASHC 70 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~---~kVr~al~~~I~ama~~~ 70 (1042)
+..||+++.-+.|+|.+.+|+.|||+...-..++.+.++.++-..+.|.| ++-+.+++-++.+++.|+
T Consensus 440 i~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~ 510 (1233)
T KOG1824|consen 440 IQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP 510 (1233)
T ss_pred HHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC
Confidence 35688888888999999999999999888889999999999999997765 667778999999999876
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.3 Score=62.36 Aligned_cols=424 Identities=14% Similarity=0.170 Sum_probs=231.4
Q ss_pred hhhhhccc-ccchhHHHHHHHhhhcCCCchhhc-cchHHHH-HHHHHhhhhccHHHHHHHHHHHHHHhhcccccCCcCc-
Q 001622 3 LLNKCRLK-EEHLSVGALYVLKHLLPRSSEAWH-SKRPLLL-EAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGE- 78 (1042)
Q Consensus 3 ll~~l~~~-~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~-~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~- 78 (1042)
|-+.+.++ ++..|==+.-.+|-++++--+.+. +-+..|- +.+.....|+-..||+.++.+|..+|..-+-+ +|
T Consensus 41 L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WP 117 (1075)
T KOG2171|consen 41 LAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWP 117 (1075)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chH
Confidence 33444443 678888888999999986222221 1233333 33333447999999999999999999988777 56
Q ss_pred cceeeeeecccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhhH----hhHHHHHhhcccccccchhhh
Q 001622 79 LFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQH----ILWPLLLKMIIPRAYTSAAAT 154 (1042)
Q Consensus 79 ~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~~----vLWP~LL~~i~p~~yT~al~~ 154 (1042)
.++.|++ ||+.++ ...+|++...+|..+..+++.-.. .+-|.+.+.+..++-+ .-..
T Consensus 118 ell~~L~-q~~~S~-----------------~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~ 178 (1075)
T KOG2171|consen 118 ELLQFLF-QSTKSP-----------------NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVA 178 (1075)
T ss_pred HHHHHHH-HHhcCC-----------------CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHH
Confidence 3788877 566532 225678877777777666654433 5556666666655544 3333
Q ss_pred HHHHHHHHHHhhccCCCcccccccCCCCCCCHHHHHHHHHHHhcCccc-c-hhhHHHHHHHHHhhCCCCCcchhhhHHhh
Q 001622 155 VCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLA-R-EQQATQILMVLYYLSPLFPTNIDLFWQDE 232 (1042)
Q Consensus 155 ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRlLvl~~~P~~-~-~~~g~~~L~lL~~l~~~ih~~l~~~W~~~ 232 (1042)
=.|.+...+.-...+.+ ..+.-..++=+++-++..-.. | ..-...+|..|--+.....+-+++.-...
T Consensus 179 a~rA~~a~~~~~~~~~~----------~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~i 248 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKS----------EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQI 248 (1075)
T ss_pred HHHHHHHHHHHhccchH----------HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 34444444433221111 111112222233333222111 1 12245666666666655555555555555
Q ss_pred hhhhhhcccCCcccCCCcchHhhHHHHHHHHHHHhhh--------------------------ccccChHHH--HHHHHH
Q 001622 233 IPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLD--------------------------VVQETDWLI--SLGNAF 284 (1042)
Q Consensus 233 IP~Ll~~Le~~~~~~~~~~~q~~We~~Ll~fL~~sL~--------------------------~i~d~~W~~--~L~~el 284 (1042)
|--.++--.+. ++ .+.|...-++|+--..+ ..+|++|.. .+-.+
T Consensus 249 i~~~l~Ia~n~-~l------~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded- 320 (1075)
T KOG2171|consen 249 IQFSLEIAKNK-EL------ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED- 320 (1075)
T ss_pred HHHHHHHhhcc-cc------cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc-
Confidence 55554443332 11 23466666665533322 223344433 11110
Q ss_pred HhhhhcCCCChhhHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHH
Q 001622 285 TEQYVLYTPDDDHSALLHRCLGILLQKVADR---NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKG 361 (1042)
Q Consensus 285 ~~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~---~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~ 361 (1042)
. |. .=+.+--+++-..=.+-..+ -.+..|+..|+.+++ ..+|..--.|+|-++.|--|.+...|..
T Consensus 321 ----~-~~---~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~---w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 321 ----D-EE---TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE---WKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred ----c-cc---CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0 10 01233334444333332222 234457777777544 5699999999999999988888888877
Q ss_pred HHhhhccccchhhhhhccCccccchhHhHHHHHHHHHHHHHh--------------------------------------
Q 001622 362 ILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAK-------------------------------------- 403 (1042)
Q Consensus 362 ~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~-------------------------------------- 403 (1042)
+... .+++++|++. +||.+...+-|+++.
T Consensus 390 Il~~--------Vl~~l~Dphp-----rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al 456 (1075)
T KOG2171|consen 390 ILPI--------VLNGLNDPHP-----RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAAL 456 (1075)
T ss_pred HHHH--------HHhhcCCCCH-----HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHH
Confidence 7653 3444455543 344444444444433
Q ss_pred -----cCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccC
Q 001622 404 -----YAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGRE 478 (1042)
Q Consensus 404 -----~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~E 478 (1042)
.|+++.+.+.+|. ++...+..+..+..+-+|...++||..++.|-.. .|. +.-+.++.++..+++.-
T Consensus 457 ~nf~E~~~~~~l~pYLd~-lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~------~F~-pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 457 VNFSEECDKSILEPYLDG-LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE------KFI-PYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HHHHHhCcHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh------hhH-hHHHHHHHHHHHHHhCC
Confidence 3455555555553 2222222233445567899999999999888422 121 33468888888888755
Q ss_pred CCCcccCchhhHHHHHHHHHHHhhhhh
Q 001622 479 ENDSFADSSIELLHTQALALSACTTLV 505 (1042)
Q Consensus 479 p~d~L~s~~~~l~~vr~~a~~ait~L~ 505 (1042)
..+.+ ...|-+.|.+++-.-
T Consensus 529 ~~~d~-------r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 529 DDKDL-------RELRGKTMECLSLIA 548 (1075)
T ss_pred Cchhh-------HHHHhhHHHHHHHHH
Confidence 53442 125677777766553
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.8 Score=58.72 Aligned_cols=458 Identities=16% Similarity=0.150 Sum_probs=258.3
Q ss_pred HHHHHHHhcccCCCcchh-------hHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhhhccCccccchhHhHHHH
Q 001622 321 KIDWMYKQANIAIPTNRL-------GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAA 393 (1042)
Q Consensus 321 ~L~~ll~~~~~~~~~ere-------G~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~ 393 (1042)
-|+.++..++-.++..|| ++...+|-.=+.|+|+.+..+..=. .|.++ .+|.+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~---------------~d~s~-----~vr~~ 178 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM---------------TDPSS-----PVRVA 178 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc---------------cCCcc-----hHHHH
Confidence 344455555555566663 5666777777888888877663211 12221 38889
Q ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHHHHHHH---hhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHH
Q 001622 394 LALMYGYAAKYAPSTV-IEARIDALVGTNMLSRL---LHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLD 469 (1042)
Q Consensus 394 l~l~YG~va~~ap~~~-ll~rve~~I~~~i~~~~---~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~ 469 (1042)
-...+|.++.+-+-+. ...++- +.+++++... ....|...=...+.++..+.....+ +.=.+-.++++
T Consensus 179 a~rA~~a~~~~~~~~~~~~~~~~-~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-------~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKSEVDKFR-DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-------LLRPHLSQIIQ 250 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHH-HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHH
Confidence 9999999999886221 222222 2333333322 2223332224455566555544322 22234568899
Q ss_pred HHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhh-hccccCCCC-------------CC
Q 001622 470 YILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDP-------------ID 535 (1042)
Q Consensus 470 ~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~-sv~~lP~~~-------------~~ 535 (1042)
.++.+.+....|. + +|+.|+..++.+++--|...-. ...+....+ -++..+.+. .+
T Consensus 251 ~~l~Ia~n~~l~~---~------~R~~ALe~ivs~~e~Ap~~~k~-~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 251 FSLEIAKNKELEN---S------IRHLALEFLVSLSEYAPAMCKK-LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHhhcccccH---H------HHHHHHHHHHHHHHhhHHHhhh-chhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 9999888766655 4 9999999999999774433222 222333333 333322221 11
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 001622 536 VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGS 615 (1042)
Q Consensus 536 ~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~ 615 (1042)
+.++-+..-.+.++-+-..-+. -.-+--+++++...++|..-.+|.-|+..+..+-. | |
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g-----~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--------G-c------- 379 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGG-----KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE--------G-C------- 379 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCCh-----hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--------c-c-------
Confidence 1122344334444433333321 12345677999999999999999999887754433 1 1
Q ss_pred cccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCch
Q 001622 616 CTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDL 695 (1042)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~ 695 (1042)
-+++. +.|-+++-+..+.-.||++.||..|..||..+= .-. ..+..+.-.
T Consensus 380 ------~~~m~------------------~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s---tdl---~p~iqk~~~ 429 (1075)
T KOG2171|consen 380 ------SDVMI------------------GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS---TDL---QPEIQKKHH 429 (1075)
T ss_pred ------HHHHH------------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh---hhh---cHHHHHHHH
Confidence 34442 257778888999999999999999999998652 100 000000000
Q ss_pred hhhhhhhcchhHHHHHhhcCCCCCChHHHHHHHHHH---HccCChhHHHHHHHH----HHHhccCCCcchH-HHHHHHHH
Q 001622 696 ELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSV---CILLTKDELVATLHS----CTTAICDRTKQSA-EGAIQAVV 767 (1042)
Q Consensus 696 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~L~~~el~~~i~~----ll~~L~d~~~~~~-~~A~~~L~ 767 (1042)
+ .+-+.+- ...-++..+.+..+-+..+ ....+.+++...+-. .+.-|..++...+ ..+...+-
T Consensus 430 e-------~l~~aL~--~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 430 E-------RLPPALI--ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred H-------hccHHHH--HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0 0111111 1111223334444343332 455555655444433 4445666655555 44444555
Q ss_pred HHHhhhccccchhcHhhHHHHHHHHhhhcCcH---HHHHHHHHHHHHHhh--------hccchhHHHHHhhhhccccccc
Q 001622 768 EFVTKRGNELSETDVSRTTQSLLSAAVHITDK---HLRLETLGAISCLAE--------NTNSKIVFNEVLATAGKDIVTK 836 (1042)
Q Consensus 768 ~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~---~~r~~~l~aI~lLa~--------~h~~~VV~~~LL~~~~~~~~~~ 836 (1042)
.+=...+.++ .....+++..+..-|..-.++ ..|-.++..+++.+. -+.++++. .++..+ ..+.+.
T Consensus 501 svA~AA~~~F-~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq-ll~~~~-~~~~~~ 577 (1075)
T KOG2171|consen 501 SVADAAQEKF-IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ-LLLELQ-GSDQDD 577 (1075)
T ss_pred HHHHHHhhhh-HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH-HHHhhc-ccchhh
Confidence 5555566666 444778888888777776633 467777888888873 24456664 666554 334445
Q ss_pred ccccccCCCCh-hhHHHHhccC-cchHHHHHHHHHHHhccCCCCC
Q 001622 837 DISRLRGGWPM-QDAFHAFSQH-AVLSFLFLEHLISALNQTPFVK 879 (1042)
Q Consensus 837 d~~~~~~plP~-d~~W~al~~~-~~l~~~vL~~LL~~L~~~p~~~ 879 (1042)
|-|.+.|..++ -+|=|++|.| .+..+.||.-|+.-.+.+|-+.
T Consensus 578 dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~ 622 (1075)
T KOG2171|consen 578 DDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA 622 (1075)
T ss_pred ccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc
Confidence 55544544443 1356777766 4777888888888777777443
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.47 E-value=5.6 Score=48.30 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHhcc-CCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccch
Q 001622 745 HSCTTAIC-DRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK 819 (1042)
Q Consensus 745 ~~ll~~L~-d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~ 819 (1042)
...+..+. +.+......|..+|..+... +. |.+|++.+...+....++..+..+.++|..+|..++..
T Consensus 306 ~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n-~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 306 SLILFFLLYDDDPSIRKKALDLLYKLANE------SN-VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH--H------HH-HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hhhhheecCCCChhHHHHHHHHHhhcccc------cc-hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence 33344555 55555556666666666543 34 88899999999988888899999999999999999754
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.35 E-value=12 Score=47.58 Aligned_cols=652 Identities=17% Similarity=0.167 Sum_probs=323.3
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhc-cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCCcCccce
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1042)
|+.||.+++--.|.-|.+=|-.=+|.+.-.++ +--+-+++.+-.+|.|.|..|..--++.+.-++.+ -++.=+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHH
Confidence 67899999999999998877776775544454 34566777777788999999988777776666633 244446
Q ss_pred eeeeecccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhhHhhHHHHHhhcccccccchhhhHHHHHHH
Q 001622 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRCISE 161 (1042)
Q Consensus 82 ~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~~vLWP~LL~~i~p~~yT~al~~ick~l~~ 161 (1042)
++++...+-. . ....++.|.++.=+|+++-.-++ |..-...-++||+.++.
T Consensus 84 e~~ve~L~~~----------~----~s~keq~rdissi~Lktvi~nl~---------------P~~~~~la~tV~~~~t~ 134 (1233)
T KOG1824|consen 84 ETIVENLCSN----------M----LSGKEQLRDISSIGLKTVIANLP---------------PSSSSFLAATVCKRITP 134 (1233)
T ss_pred HHHHHHHhhh----------h----ccchhhhccHHHHHHHHHHhcCC---------------CccccccccHHHHHHHH
Confidence 7777654421 0 11245677887777776543222 21122234568888887
Q ss_pred HHHhhccCCCccc-ccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHHhhhhhhhhcc
Q 001622 162 LCRHRSSSSNVML-SECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYV 240 (1042)
Q Consensus 162 La~k~~~~~~~~~-i~~~~~~~lPsp~~llaRlLvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~IP~Ll~~L 240 (1042)
-..-.....++.. +. |-|+=. =..++.=+..+-|+||+.+ -..-.|.|
T Consensus 135 ~l~~~i~~qe~~sai~----------------~e~lDi--------l~d~lsr~g~ll~~fh~~i---l~~l~~ql---- 183 (1233)
T KOG1824|consen 135 KLKQAISKQEDVSAIK----------------CEVLDI--------LADVLSRFGTLLPNFHLSI---LKCLLPQL---- 183 (1233)
T ss_pred HHHHHhhhcccchhhH----------------HHHHHH--------HHHHHHhhcccCcchHHHH---HHHHhhcc----
Confidence 7654443222221 22 111100 0011111223456666652 22223333
Q ss_pred cCCcccCCCcchHhhHHHHHHHHHHHhhhccccChHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHhhcCChhHHHH
Q 001622 241 SDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCD 320 (1042)
Q Consensus 241 e~~~~~~~~~~~q~~We~~Ll~fL~~sL~~i~d~~W~~~L~~el~~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~~~V~~ 320 (1042)
...+..-..+-+-.|..-.-..+++- -..+...+-+-+.-- .++.+-+-+-+|+|.+.+.+-.+ .-+
T Consensus 184 ---------~s~R~aVrKkai~~l~~la~~~~~~l-y~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~ag~r--~~~ 250 (1233)
T KOG1824|consen 184 ---------QSPRLAVRKKAITALGHLASSCNRDL-YVELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQAGHR--FGS 250 (1233)
T ss_pred ---------cChHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHhcch--hhc
Confidence 12334444443333333222233332 223344444433322 45667788899999999876443 122
Q ss_pred HHHHHHHh-cccC------CCcchhhHHHHHHHHhh-------hCHHHHHHHHHHHHhh-------hccccchhhhhhcc
Q 001622 321 KIDWMYKQ-ANIA------IPTNRLGLAKAMGLVAA-------SHLDAVLEMLKGILDN-------IGQSLFQRLLSFFS 379 (1042)
Q Consensus 321 ~L~~ll~~-~~~~------~~~ereG~A~~~G~~A~-------~Hld~vL~~L~~~~k~-------~~~~~~~~~~~~~~ 379 (1042)
|+..+... ++|. .+.=||-|..|+|.--. -|.+.+++.+-++..= .+.+.-..+..-..
T Consensus 251 h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~e 330 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEE 330 (1233)
T ss_pred ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccc
Confidence 43322210 1333 34457888888886543 3667777776665521 00111111111111
Q ss_pred -----Ccccc-chh-HhHHHHHHHHHHHHHhcCCchhHHHHHH------HHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 001622 380 -----NSYRM-EES-DDIHAALALMYGYAAKYAPSTVIEARID------ALVGTNMLSRLLHVRHHTAKQAVITAIDLLG 446 (1042)
Q Consensus 380 -----~~~~~-~e~-~~~ks~l~l~YG~va~~ap~~~ll~rve------~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~ 446 (1042)
+-+++ +++ =++|=+-.-|. ...|.+|.| +.+.+..+.+| +-+++.+|.-.+.+...+=
T Consensus 331 Dde~~deYsDDeD~SWkVRRaAaKcl--------~a~IsSR~E~L~~~~q~l~p~lI~Rf-kEREEnVk~dvf~~yi~ll 401 (1233)
T KOG1824|consen 331 DDEQDDEYSDDEDMSWKVRRAAAKCL--------EAVISSRLEMLPDFYQTLGPALISRF-KEREENVKADVFHAYIALL 401 (1233)
T ss_pred cchhccccccccchhHHHHHHHHHHH--------HHHHhccHHHHHHHHHHhCHHHHHHH-HHHhhhHHHHHHHHHHHHH
Confidence 11111 122 13443333333 333445554 45555566666 4577888888887777665
Q ss_pred HHHHhhhh----------cCCCCCCC----CHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCC
Q 001622 447 RAVINAAE----------NGASFPLK----KRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLT 512 (1042)
Q Consensus 447 ~Al~~~~~----------~~~~f~f~----~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~ 512 (1042)
+.+.+-.+ ++..|..+ +-.-++..+-..+++ ++ .+ +|+.++..++.|+..-|..-
T Consensus 402 ~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~---ks--~k------t~~~cf~lL~eli~~lp~~l 470 (1233)
T KOG1824|consen 402 KQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE---KS--VK------TRQGCFLLLTELINVLPGAL 470 (1233)
T ss_pred HcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh---cc--cc------chhhHHHHHHHHHHhCcchh
Confidence 55443211 11122221 111233333333431 22 22 77888888888887766654
Q ss_pred hhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChh-H---HHhhHH
Q 001622 513 IETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPV-E---YQRRRS 588 (1042)
Q Consensus 513 ~e~~~~ll~~c~sv~~lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k-~---hEReRA 588 (1042)
.+....++.... |+||. .+...+--++++.-+...+.... |+.+..+++.|.|-+.... + .--..|
T Consensus 471 ~~~~~slvpgI~--~~l~D-kSsss~~ki~~L~fl~~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKisaEA 540 (1233)
T KOG1824|consen 471 AQHIPSLVPGII--YSLND-KSSSSNLKIDALVFLYSALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKISAEA 540 (1233)
T ss_pred hhcccccchhhh--hhcCC-ccchHHHHHHHHHHHHHHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhhHHH
Confidence 444333333222 22221 11222333666666655544333 6777777776665442111 1 112223
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHH--HhhcCccCCChhHH
Q 001622 589 CLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI--MYLPRCADTDSEVR 666 (1042)
Q Consensus 589 ~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg--~l~prC~D~~~~ir 666 (1042)
+.++..+.++.+ ... .|+.|-.++ ..|.+.. +=-+.-.|.|.+||
T Consensus 541 L~v~~~lvkvir-----------------------pl~------~~~~~d~~~----~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 541 LLVCQQLVKVIR-----------------------PLQ------PPSSFDASP----YVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred HHHHHHHHHHhc-----------------------ccC------CCccCCCCh----hHHHHHHHHHHHHhcccccHHHH
Confidence 333433333222 111 122221111 3333322 12345789999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCCh-HHHHHHHHHHHccCC-hhHHHHHH
Q 001622 667 KISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPS-EVFNRIVSSVCILLT-KDELVATL 744 (1042)
Q Consensus 667 ~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~L~-~~el~~~i 744 (1042)
..|+.||..+. +.+.-. ... +.. ..+.-+.+.++++.+.... .-+..|+-+ .-.++ ...++..+
T Consensus 588 eraIscmgq~i--~~fgD~-----l~~--eL~----~~L~il~eRl~nEiTRl~AvkAlt~Ia~S-~l~i~l~~~l~~il 653 (1233)
T KOG1824|consen 588 ERAISCMGQII--ANFGDF-----LGN--ELP----RTLPILLERLGNEITRLTAVKALTLIAMS-PLDIDLSPVLTEIL 653 (1233)
T ss_pred HHHHHHHHHHH--HHHhhh-----hhh--hhH----HHHHHHHHHHhchhHHHHHHHHHHHHHhc-cceeehhhhHHHHH
Confidence 99999999885 332111 000 000 1122222322332221100 001111111 11222 23344444
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhh
Q 001622 745 HSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAE 814 (1042)
Q Consensus 745 ~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~ 814 (1042)
-.+..-++..+...-.+.-..++.+++..|..+ + ++.++.+..+++..-.+.-++.+-.|+..|+.
T Consensus 654 ~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~---~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 654 PELASFLRKNQRALRLATLTALDKLVKNYSDSI-P---AELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444454444445667778899999998888 3 36888888888888777666666666665543
No 8
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.62 E-value=15 Score=41.94 Aligned_cols=187 Identities=20% Similarity=0.254 Sum_probs=117.1
Q ss_pred HHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHhc---ccCCCcchhhHHHHHHHHh---
Q 001622 278 ISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQK---VADRNYVCDKIDWMYKQA---NIAIPTNRLGLAKAMGLVA--- 348 (1042)
Q Consensus 278 ~~L~~el~~q~~~y~~~~~eK~fL~k~lG~~L~~---~~~~~~V~~~L~~ll~~~---~~~~~~ereG~A~~~G~~A--- 348 (1042)
..|...+.+-+. .+.+.|.....+++|++--. ..+.+-|-+.+...|... ......-|..|+.|+|+|+
T Consensus 85 ~tL~~~~~k~lk--kg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 85 ETLLDALLKSLK--KGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 334444444333 35568999999999887333 345555444544444322 2233456788999999873
Q ss_pred hhCHHHHHHHHHHHHhhhccccchhhhhhccCccc-----cchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 001622 349 ASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYR-----MEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNML 423 (1042)
Q Consensus 349 ~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~-----~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~ 423 (1042)
....+.+.+.++.+... | ...+.+..+. ..+...+.++.+.++|-++...|+..+...++..+ +. +
T Consensus 163 ~~d~~~~~~~~~~le~i-----f--~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~-~~-l 233 (309)
T PF05004_consen 163 GSDEEETEELMESLESI-----F--LLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEAL-PA-L 233 (309)
T ss_pred cCChhHHHHHHHHHHHH-----H--HHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH-H
Confidence 45667777444433210 0 0111111111 12235688999999999999999987765556443 22 3
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccC
Q 001622 424 SRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGRE 478 (1042)
Q Consensus 424 ~~~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~E 478 (1042)
..++.+.|..++.+-=++|.+|-...... ..+|.|...++|++.|-.+-...
T Consensus 234 ~~lL~s~d~~VRiAAGEaiAll~E~~~~~---~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 234 SELLDSDDVDVRIAAGEAIALLYELARDH---EEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhcc---cccccccCHHHHHHHHHHHHHhc
Confidence 33557889999999999999887765432 22588889999999888887754
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.75 E-value=38 Score=41.13 Aligned_cols=392 Identities=13% Similarity=0.140 Sum_probs=200.3
Q ss_pred CCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccc
Q 001622 292 TPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLF 371 (1042)
Q Consensus 292 ~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~ 371 (1042)
.++..+|+..|-++......-. +.+.--+..+.+..++.++..| +.|+...+.-........+-.....
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~--~~~~l~~n~l~kdl~~~n~~~~---~lAL~~l~~i~~~~~~~~l~~~v~~------ 121 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDP--ELLILIINSLQKDLNSPNPYIR---GLALRTLSNIRTPEMAEPLIPDVIK------ 121 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSH--HHHHHHHHHHHHHHCSSSHHHH---HHHHHHHHHH-SHHHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhhcCCCHHHH---HHHHhhhhhhcccchhhHHHHHHHH------
Confidence 5678899988877666655443 3333344555554455554333 2333333332233333333222221
Q ss_pred hhhhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHh
Q 001622 372 QRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVIN 451 (1042)
Q Consensus 372 ~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~ 451 (1042)
...++. .-+|...+++..++....|.. + +..+. +.+..+...+|+.++.+.+.++..+ + .+
T Consensus 122 -----ll~~~~-----~~VRk~A~~~l~~i~~~~p~~-~----~~~~~-~~l~~lL~d~~~~V~~~a~~~l~~i-~--~~ 182 (526)
T PF01602_consen 122 -----LLSDPS-----PYVRKKAALALLKIYRKDPDL-V----EDELI-PKLKQLLSDKDPSVVSAALSLLSEI-K--CN 182 (526)
T ss_dssp -----HHHSSS-----HHHHHHHHHHHHHHHHHCHCC-H----HGGHH-HHHHHHTTHSSHHHHHHHHHHHHHH-H--CT
T ss_pred -----HhcCCc-----hHHHHHHHHHHHHHhccCHHH-H----HHHHH-HHHhhhccCCcchhHHHHHHHHHHH-c--cC
Confidence 122222 258888888888888886664 2 11122 2344455778888888888888877 1 11
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhhhccccCC
Q 001622 452 AAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPN 531 (1042)
Q Consensus 452 ~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~sv~~lP~ 531 (1042)
. + .|. .--..+...+..++ ..|.+. .+..++..+..+....|..... ..+++.+...+.
T Consensus 183 ~-~---~~~-~~~~~~~~~L~~~l-~~~~~~----------~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~--- 241 (526)
T PF01602_consen 183 D-D---SYK-SLIPKLIRILCQLL-SDPDPW----------LQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ--- 241 (526)
T ss_dssp H-H---HHT-THHHHHHHHHHHHH-TCCSHH----------HHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH---
T ss_pred c-c---hhh-hhHHHHHHHhhhcc-cccchH----------HHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh---
Confidence 1 1 122 22345555555444 233122 4455666666555433322211 455555543222
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccC
Q 001622 532 DPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALG 611 (1042)
Q Consensus 532 ~~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~ 611 (1042)
.......|++...+ +.-.+ ....++..++.|...+.|....-|-=|+..+..+.+.+...
T Consensus 242 --s~~~~V~~e~~~~i----~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~--------- 301 (526)
T PF01602_consen 242 --SSSPSVVYEAIRLI----IKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA--------- 301 (526)
T ss_dssp --HHHHHHHHHHHHHH----HHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---------
T ss_pred --ccccHHHHHHHHHH----HHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---------
Confidence 01112223333222 21121 24567788888888888776667766666554444422100
Q ss_pred CCCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 001622 612 CHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSS 691 (1042)
Q Consensus 612 ~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~ 691 (1042)
.....+-.+.++ .|++..||..|++.++.+..=
T Consensus 302 ----------------------------------v~~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~~~------------ 334 (526)
T PF01602_consen 302 ----------------------------------VFNQSLILFFLL-YDDDPSIRKKALDLLYKLANE------------ 334 (526)
T ss_dssp ----------------------------------HGTHHHHHHHHH-CSSSHHHHHHHHHHHHHH--H------------
T ss_pred ----------------------------------hhhhhhhhheec-CCCChhHHHHHHHHHhhcccc------------
Confidence 112222223222 488899999999988777421
Q ss_pred CCchhhhhhhhcchhHHHHHhhcCCCCCChHH----HHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 001622 692 GIDLELSYGALSSLEDVIAILRSDASIDPSEV----FNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVV 767 (1042)
Q Consensus 692 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~----~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~ 767 (1042)
.+.+.. ++++....+ ...+++. ...|++...++ +.....++.++++-+...+......+...+.
T Consensus 335 -~n~~~I------l~eL~~~l~---~~~d~~~~~~~i~~I~~la~~~--~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~ 402 (526)
T PF01602_consen 335 -SNVKEI------LDELLKYLS---ELSDPDFRRELIKAIGDLAEKF--PPDAEWYVDTLLKLLEISGDYVSNEIINVIR 402 (526)
T ss_dssp -HHHHHH------HHHHHHHHH---HC--HHHHHHHHHHHHHHHHHH--GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHH
T ss_pred -cchhhH------HHHHHHHHH---hccchhhhhhHHHHHHHHHhcc--CchHHHHHHHHHHhhhhccccccchHHHHHH
Confidence 111111 122222111 1222222 23333333344 2223344455555555555555656666666
Q ss_pred HHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccc
Q 001622 768 EFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS 818 (1042)
Q Consensus 768 ~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~ 818 (1042)
.++.. ..+. -..+++.++..+..+.++.++..++..+--.+.+...
T Consensus 403 ~ll~~-~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 403 DLLSN-NPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHH-STTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHhhc-Chhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 66644 3344 3347888888888899999988888888877777654
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=91.63 E-value=50 Score=42.33 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=102.8
Q ss_pred HHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCch
Q 001622 563 ADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSR 642 (1042)
Q Consensus 563 ~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~ 642 (1042)
++..-..+..+..=++++++.-|.-|+.++.. +...
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~---------------------------Ir~~----------------- 135 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMC---------------------------IRVS----------------- 135 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc---------------------------CCcH-----------------
Confidence 44444556677777777777878777765421 1111
Q ss_pred hhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChH
Q 001622 643 EALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE 722 (1042)
Q Consensus 643 ~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 722 (1042)
..+..++.-+--.+.|+++-||+.|+-|+.+++++.- . ...+. .+. +. + .+. +...++.
T Consensus 136 --~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---e---lv~~~--~~~-~~---L---~~L----L~D~dp~ 194 (746)
T PTZ00429 136 --SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---Q---LFYQQ--DFK-KD---L---VEL----LNDNNPV 194 (746)
T ss_pred --HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---c---ccccc--chH-HH---H---HHH----hcCCCcc
Confidence 2556666666667789999999999999999985421 0 11100 111 11 1 111 1223344
Q ss_pred HHHHHHH---HHHccCCh--hHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcC
Q 001622 723 VFNRIVS---SVCILLTK--DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT 797 (1042)
Q Consensus 723 ~~~~i~~---~i~~~L~~--~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~ 797 (1042)
+....+. .|...-+. .-....+..+++.|.+.+ -.+-..+|+.+.+..- .= +.+.-+|++.+..+|.+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~---EW~Qi~IL~lL~~y~P-~~-~~e~~~il~~l~~~Lq~~- 268 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECN---EWGQLYILELLAAQRP-SD-KESAETLLTRVLPRMSHQ- 268 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhcCC-CC-cHHHHHHHHHHHHHhcCC-
Confidence 4322222 22221110 011333444555554432 3556677777765432 21 222667888888888885
Q ss_pred cHHHHHHHHHHHHHHhhhccchhH
Q 001622 798 DKHLRLETLGAISCLAENTNSKIV 821 (1042)
Q Consensus 798 ~~~~r~~~l~aI~lLa~~h~~~VV 821 (1042)
++.+--++.+++..++....++.+
T Consensus 269 N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 269 NPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred CHHHHHHHHHHHHHhcCcCCHHHH
Confidence 467777777777777755333444
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=21 Score=45.78 Aligned_cols=134 Identities=22% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHhhhhhccCCCCChhHHHHHHHHhhhccc----c-CCCCC-CchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHH
Q 001622 496 LALSACTTLVTVEPKLTIETRNHVMKATLGFFA----L-PNDPI-DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHI 569 (1042)
Q Consensus 496 ~a~~ait~L~~L~P~L~~e~~~~ll~~c~sv~~----l-P~~~~-~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~i 569 (1042)
.|+..++.+++=+ +.|.-..+++.|.++|+ - |+..+ -..+.-+..+..+..-|+.+++ -.+.+..|
T Consensus 391 Aa~~~l~~~~~KR---~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-----~~~~mE~f 462 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR---GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-----YKSQMEYF 462 (1010)
T ss_pred HHHHHHHHHHHhc---chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-----hHHHHHHH
Confidence 3666666666433 12333445555555444 2 22211 1123345556666533443443 13566555
Q ss_pred H-HhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhhhhhh
Q 001622 570 L-RQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLG 648 (1042)
Q Consensus 570 l-~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG 648 (1042)
+ .|.-|-.+|+-.|-|.||+..+.+ |.+ ++.+.+.+ -.-
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~----~~~--------------------~df~d~~~----------------l~~ 502 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQ----FSS--------------------IDFKDPNN----------------LSE 502 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHH----HHh--------------------ccCCChHH----------------HHH
Confidence 5 899999999999999999987753 332 22221111 111
Q ss_pred hHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001622 649 NRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 649 ~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
.+=+-...+|.|++-.||-+|+.|++.+.
T Consensus 503 ale~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 503 ALELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 12233455677999999999999999885
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.89 E-value=58 Score=41.69 Aligned_cols=81 Identities=10% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHhccCCCcchH--HHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchh
Q 001622 743 TLHSCTTAICDRTKQSA--EGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1042)
Q Consensus 743 ~i~~ll~~L~d~~~~~~--~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~V 820 (1042)
-|+-.+.-|.|+....+ --.+.++..++..-|.++.+. +..|++++..+|..-...++.+.++-+..-|....++.+
T Consensus 708 yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~ 786 (1005)
T KOG2274|consen 708 YIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQL 786 (1005)
T ss_pred HHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHH
Confidence 44444455566543322 345678889999999999777 999999999999999999999999999999999988888
Q ss_pred HHHHHh
Q 001622 821 VFNEVL 826 (1042)
Q Consensus 821 V~~~LL 826 (1042)
+ .+|
T Consensus 787 l--~FL 790 (1005)
T KOG2274|consen 787 L--NFL 790 (1005)
T ss_pred H--HHH
Confidence 8 566
No 13
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=1.1e+02 Score=40.58 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=145.6
Q ss_pred HHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchh
Q 001622 564 DQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSRE 643 (1042)
Q Consensus 564 ~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~ 643 (1042)
+.+..+.+.|.+=++|-...-|..++.+...+++..-+ . .
T Consensus 693 q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~---------------------e-------------------~ 732 (1176)
T KOG1248|consen 693 QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA---------------------E-------------------H 732 (1176)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH---------------------H-------------------H
Confidence 44555566666666677777777778877777772210 0 1
Q ss_pred hhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChH-
Q 001622 644 ALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE- 722 (1042)
Q Consensus 644 ~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~- 722 (1042)
+...=++|...++.--|-|...|+.|-+|++.+..|+..+. ...++ +-..+++.+.++..++.++...
T Consensus 733 ~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d------~g~e~-----~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 733 CDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD------DGNEP-----ASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc------ccccc-----hHHHHHHHHHHHHhhhcccHHHH
Confidence 12455666777777799999999999999999987766432 11111 1234667777777777766542
Q ss_pred ----HH--HHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhcc-ccchhcHhhHHHHHHHHhhh
Q 001622 723 ----VF--NRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGN-ELSETDVSRTTQSLLSAAVH 795 (1042)
Q Consensus 723 ----~~--~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~-~l~e~dV~eIv~~i~~~l~~ 795 (1042)
++ +.+.+.+...++.+=+.+++.+.---|....+..+.+|...++.++..--. -+..- +++|+..++. +.+
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~-ls~ 879 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLA-LSH 879 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHH-HHH
Confidence 22 467788889999988888888888888899999999999998888765333 33233 7778887777 666
Q ss_pred cCcHHHHHHHHHHHHHHhhhccchhHHHHHh
Q 001622 796 ITDKHLRLETLGAISCLAENTNSKIVFNEVL 826 (1042)
Q Consensus 796 i~~~~~r~~~l~aI~lLa~~h~~~VV~~~LL 826 (1042)
-..-.+|..+..-+--|.+.+-.+.+. .++
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe-~~~ 909 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELE-SFL 909 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHH-hhC
Confidence 555677777777777777877777775 555
No 14
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.80 E-value=27 Score=39.00 Aligned_cols=110 Identities=9% Similarity=0.095 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccc-hhHHHHHhhhhcccccccccc
Q 001622 761 GAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS-KIVFNEVLATAGKDIVTKDIS 839 (1042)
Q Consensus 761 ~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~-~VV~~~LL~~~~~~~~~~d~~ 839 (1042)
..=.++..+++.+...+.+. =++.+.++.+.+.+=.+|+.---+-+.+..+.+.... +.++ .+.... .|=||++
T Consensus 101 ~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e-~lFd~~---~cYFPI~ 175 (262)
T PF14500_consen 101 AVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE-DLFDVF---SCYFPIT 175 (262)
T ss_pred HHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH-HHHHHh---hheeeee
Confidence 34445555566655555323 3467788888888889998887777877777766543 2232 333211 2344543
Q ss_pred ---cccCCCCh--hh----HHHHhccCcchHHHHHHHHHHHhccC
Q 001622 840 ---RLRGGWPM--QD----AFHAFSQHAVLSFLFLEHLISALNQT 875 (1042)
Q Consensus 840 ---~~~~plP~--d~----~W~al~~~~~l~~~vL~~LL~~L~~~ 875 (1042)
.-+-|... ++ +=+++++.+..++..+..|++||...
T Consensus 176 F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 176 FRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDST 220 (262)
T ss_pred eeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCC
Confidence 11111111 22 78899999999999999999999875
No 15
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.90 E-value=69 Score=40.30 Aligned_cols=205 Identities=10% Similarity=0.073 Sum_probs=113.0
Q ss_pred HHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhcccc
Q 001622 549 CAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLG 628 (1042)
Q Consensus 549 ~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~ 628 (1042)
..+....+.| ..+++.|.+.+.||++.....----|+..+.+.++++-+.. .+ + +.++.
T Consensus 224 ~~l~~y~p~d----~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~-----------~--~~K~~--- 282 (734)
T KOG1061|consen 224 DCLAEYVPKD----SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-EL-----------L--FKKVA--- 282 (734)
T ss_pred HHHHhcCCCC----chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HH-----------H--HHHhc---
Confidence 3444444443 47899999999999999988877778888888887554310 00 0 01111
Q ss_pred CCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCC--CCCCCCCCCchhhhhhhhcch-
Q 001622 629 NFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLP--RPVGSSSGIDLELSYGALSSL- 705 (1042)
Q Consensus 629 ~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~--~~~g~~~~~~~~~~~~~l~~l- 705 (1042)
+. +.-.| |..++++-.|..=+..+++=.-.+. ..+-+.-.++ |-.|-++.++
T Consensus 283 -------------------~p----l~tll-s~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kyn-DPiYvK~eKle 337 (734)
T KOG1061|consen 283 -------------------PP----LVTLL-SSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYN-DPIYVKLEKLE 337 (734)
T ss_pred -------------------cc----ceeee-cccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecC-CchhhHHHHHH
Confidence 11 22222 2333777777666665542110000 0001111121 2222222222
Q ss_pred -----------hHHHHHhhcCCCCCChHHHHHHHHHH---HccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHh
Q 001622 706 -----------EDVIAILRSDASIDPSEVFNRIVSSV---CILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVT 771 (1042)
Q Consensus 706 -----------~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~ 771 (1042)
.++++-.++-.+..|.+...+.++++ +-+.... -+.|-.+++.+.-.....++.+.+++..++.
T Consensus 338 il~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 338 ILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 12222222223333333334555555 2333333 6677788888887777788888888888887
Q ss_pred hhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHH
Q 001622 772 KRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1042)
Q Consensus 772 ~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l 806 (1042)
..-... + .++..++....++++|.+|..+.
T Consensus 416 kyP~~~-~----~vv~~l~~~~~sl~epeak~ami 445 (734)
T KOG1061|consen 416 KYPNKY-E----SVVAILCENLDSLQEPEAKAALI 445 (734)
T ss_pred cCCCch-h----hhhhhhcccccccCChHHHHHHH
Confidence 765444 3 36677777888888888888776
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.31 E-value=57 Score=34.96 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHHHH
Q 001622 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1042)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 725 (1042)
.+..++..+.-+|+|+...||+.|.+|+..+.. .. . .. +.+
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~------~~----~-~~--------------------------~~~-- 131 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIE------SC----S-YS--------------------------PKI-- 131 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT------TS------H----------------------------HH--
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH------HC----C-cH--------------------------HHH--
Confidence 577778888899999999999999999987751 10 0 00 000
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhc---cccchhc-HhhHHHHHHHHhhhcCcHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG---NELSETD-VSRTTQSLLSAAVHITDKHL 801 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG---~~l~e~d-V~eIv~~i~~~l~~i~~~~~ 801 (1042)
++..+..+..+.++..-..++..+..+++..| ..+.... ++.++..|.. +-...++.+
T Consensus 132 -----------------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~V 193 (228)
T PF12348_consen 132 -----------------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEV 193 (228)
T ss_dssp -----------------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHH
T ss_pred -----------------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHH
Confidence 01223356677777777888899999999888 5552221 3556665554 667777899
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHh
Q 001622 802 RLETLGAISCLAENTNSKIVFNEVL 826 (1042)
Q Consensus 802 r~~~l~aI~lLa~~h~~~VV~~~LL 826 (1042)
|..+-+++..+.++.++.. . .++
T Consensus 194 R~~Ar~~~~~l~~~~~~~a-~-~~~ 216 (228)
T PF12348_consen 194 REAARECLWALYSHFPERA-E-SIL 216 (228)
T ss_dssp HHHHHHHHHHHHHHH-HHH------
T ss_pred HHHHHHHHHHHHHHCCHhh-c-cch
Confidence 9999999999999987764 3 455
No 17
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.73 E-value=2 Score=31.31 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=25.6
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhcc
Q 001622 40 LLEAVKSLLDEQNLAVQKAISELIVVMASHC 70 (1042)
Q Consensus 40 i~~~vk~~l~d~~~kVr~al~~~I~ama~~~ 70 (1042)
|+..+..++.|++.+||.+.++.+..++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4556677889999999999999999999863
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=1.3e+02 Score=36.78 Aligned_cols=212 Identities=13% Similarity=0.147 Sum_probs=126.5
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHHHH
Q 001622 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1042)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 725 (1042)
.+-+.+--..+.|.|+|..||-.|-|.+|-+-.++. |. ....-+++|-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k------~~--------------------------v~~~Fn~iFd 128 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK------GE--------------------------VLVYFNEIFD 128 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc------cC--------------------------cccchHHHHH
Confidence 344455557778999999999999998875543321 11 1112233332
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhh----hccccchhcHhhHHHHHHHHhhhcCcHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK----RGNELSETDVSRTTQSLLSAAVHITDKHL 801 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~----rG~~l~e~dV~eIv~~i~~~l~~i~~~~~ 801 (1042)
-+++.. .|+ .+.++++++++..++|. +.+.+ ++++++.-+-.++..+ .+.+
T Consensus 129 vL~kls--------------------aDs-d~~V~~~aeLLdRLikdIVte~~~tF---sL~~~ipLL~eriy~~-n~~t 183 (675)
T KOG0212|consen 129 VLCKLS--------------------ADS-DQNVRGGAELLDRLIKDIVTESASTF---SLPEFIPLLRERIYVI-NPMT 183 (675)
T ss_pred HHHHHh--------------------cCC-ccccccHHHHHHHHHHHhcccccccc---CHHHHHHHHHHHHhcC-CchH
Confidence 222221 222 45567888888888776 33344 2889999999998887 7899
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHhhhhcccccccccccccCCCChhhHHHHhccCcch----HHHHHHHHHHHhccCCC
Q 001622 802 RLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVL----SFLFLEHLISALNQTPF 877 (1042)
Q Consensus 802 r~~~l~aI~lLa~~h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~~l----~~~vL~~LL~~L~~~p~ 877 (1042)
|+.++.=++.|-.--.-+.+. .+= -=+|-++..|+....- +..+|..+|.-+++.|.
T Consensus 184 R~flv~Wl~~Lds~P~~~m~~-yl~------------------~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 184 RQFLVSWLYVLDSVPDLEMIS-YLP------------------SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHhcCCcHHHHh-cch------------------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999998775554442 111 0014488888866554 44566667888888886
Q ss_pred CCCCCCCCCCCCCCCCcccchhhHH---HHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhh
Q 001622 878 VKGDMEKGDYSSHSADTWIDDDILQ---AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSC 941 (1042)
Q Consensus 878 ~~~~~~~~~~~~~~t~~~~~~~~~l---aA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~ 941 (1042)
.-+-++..+.. .++.++--|. .|.-=+.|+.+ .+...+.-+++.+|.++|--+++.
T Consensus 245 s~d~~~~i~vl----v~~l~ss~~~iq~~al~Wi~efV~----i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 245 SMDYDDMINVL----VPHLQSSEPEIQLKALTWIQEFVK----IPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred ccCcccchhhc----cccccCCcHHHHHHHHHHHHHHhc----CCCcchhhhhhhhhhhcccCCCCC
Confidence 63322112111 1111222333 34455555555 445667777788777776555443
No 19
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=75.13 E-value=68 Score=35.57 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=86.0
Q ss_pred ccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhc-----------cchhHHHHHhhhhccc-ccccccccccC
Q 001622 776 ELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT-----------NSKIVFNEVLATAGKD-IVTKDISRLRG 843 (1042)
Q Consensus 776 ~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h-----------~~~VV~~~LL~~~~~~-~~~~d~~~~~~ 843 (1042)
.+..+++.+|.+.+..+|..+.+.-+-..+-.+...+++.= |.+-+. .+|.....+ ....+++|++.
T Consensus 88 ~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~-~~l~~i~~~~~~~~~iTRRSA 166 (255)
T PF10350_consen 88 LLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLD-ELLEAIESKGQQKLSITRRSA 166 (255)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHH-HHHHHHhcccccccccccccC
Confidence 34333377777777777777777755555555555544321 222333 444333222 11226899999
Q ss_pred CCChhhHHHHh-ccCc----chHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHccCCcc
Q 001622 844 GWPMQDAFHAF-SQHA----VLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKV 918 (1042)
Q Consensus 844 plP~d~~W~al-~~~~----~l~~~vL~~LL~~L~~~p~~~~~~~~~~~~~~~t~~~~~~~~~laA~~aL~Ell~~~~~~ 918 (1042)
.+|+ +..++ .+++ ++...+++.|+..-+......++. + .+..-+=|++.|..+|... .
T Consensus 167 GLP~--~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~--~-----------~d~~qVHAlNiLr~if~ds--~ 229 (255)
T PF10350_consen 167 GLPF--LILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDE--K-----------SDLPQVHALNILRAIFRDS--K 229 (255)
T ss_pred cHHH--HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccccc--c-----------cchHHHHHHHHHHHHHhcc--h
Confidence 9997 33332 3444 577888888888776644432221 0 0122356999999999977 9
Q ss_pred hHHHHHHhhhHHHHHHHH
Q 001622 919 GKKAVEKSYAPVLAALTL 936 (1042)
Q Consensus 919 ~~~av~~~fp~Lf~aLLl 936 (1042)
....+..++++.|..=+-
T Consensus 230 L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 230 LSEDVSPYIEDALILAIK 247 (255)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999888754433
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=74.35 E-value=2.2e+02 Score=35.00 Aligned_cols=209 Identities=19% Similarity=0.173 Sum_probs=124.8
Q ss_pred CcchhhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHH
Q 001622 334 PTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEAR 413 (1042)
Q Consensus 334 ~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~r 413 (1042)
-.+||.-+.|||-+-.+--..-+.++= .. ...++.+.++|+. -.+|+|-.-|+|.+|.+.+.- |-+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V---~q----alp~i~n~m~D~~-----l~vk~ttAwc~g~iad~va~~-i~p- 445 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIV---PQ----ALPGIENEMSDSC-----LWVKSTTAWCFGAIADHVAMI-ISP- 445 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhH---Hh----hhHHHHHhcccce-----eehhhHHHHHHHHHHHHHHHh-cCc-
Confidence 358899999999888877776666552 21 2234555555543 258888899999998876542 101
Q ss_pred HHHHHHHHHHHHHhhccCh-----hHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchh
Q 001622 414 IDALVGTNMLSRLLHVRHH-----TAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSI 488 (1042)
Q Consensus 414 ve~~I~~~i~~~~~~~kd~-----~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~ 488 (1042)
+.|+..-....+....|- ..--.+..=++.+++|+. ..++|..+.-..+++-+..-....-+++ .
T Consensus 446 -~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~----~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~---n-- 515 (858)
T COG5215 446 -CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVR----EVESFLAKFYLAILNALVKGTELALNES---N-- 515 (858)
T ss_pred -cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhc----cccchhHHHHHHHHHHHHHHHHhhccch---h--
Confidence 223332222222222221 122334444667777752 3457888888888887775433233232 2
Q ss_pred hHHHHHHHHHHHhhhhhccCCCCChhHHH-------HHHHHhhhccc--cCCCCCCchHHHHHHHHHHHHHHHhhcCCCC
Q 001622 489 ELLHTQALALSACTTLVTVEPKLTIETRN-------HVMKATLGFFA--LPNDPIDVVNPLIDNLITLLCAILLTSGEDG 559 (1042)
Q Consensus 489 ~l~~vr~~a~~ait~L~~L~P~L~~e~~~-------~ll~~c~sv~~--lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~ 559 (1042)
.|.-++.|+.+|+..-|.=-.+... +=++.|++|.+ +--++.-..+.+..++..+|.+++.+.+.|-
T Consensus 516 ----~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i 591 (858)
T COG5215 516 ----LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI 591 (858)
T ss_pred ----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6777999999998765543222221 22344665554 3333344456677889999999999988765
Q ss_pred CCcHHHHHHHH
Q 001622 560 RSRADQLLHIL 570 (1042)
Q Consensus 560 ~~~~~~L~~il 570 (1042)
++..+.|.++|
T Consensus 592 e~v~D~lm~Lf 602 (858)
T COG5215 592 EDVEDQLMELF 602 (858)
T ss_pred ccHHHHHHHHH
Confidence 56667676665
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=71.97 E-value=2.5e+02 Score=34.47 Aligned_cols=311 Identities=13% Similarity=0.108 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhhh
Q 001622 298 SALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSF 377 (1042)
Q Consensus 298 K~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~ 377 (1042)
-...-.+++.++....-.....++...+...-.|.++.-|+-+..++|-++..+ +.+...+ ... ..+..+..-
T Consensus 55 v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~---~~~---~l~~~i~~~ 127 (503)
T PF10508_consen 55 VELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLL---VDN---ELLPLIIQC 127 (503)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHh---cCc---cHHHHHHHH
Confidence 344446688888877666667777777777778888899999999999999665 3333322 111 122223333
Q ss_pred ccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhhhhcCC
Q 001622 378 FSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGA 457 (1042)
Q Consensus 378 ~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~ 457 (1042)
..+.. . .+....+-+...++.+-+ .+-.-++.+.+..+.+ +....+..+|...+..+..|++. .++
T Consensus 128 L~~~d--~---~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~-S~~----- 193 (503)
T PF10508_consen 128 LRDPD--L---SVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIASH-SPE----- 193 (503)
T ss_pred HcCCc--H---HHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHhc-CHH-----
Confidence 33332 1 234444445555555322 2222224433333333 33344777888777777777654 221
Q ss_pred CCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhhhccccCCCCCCch
Q 001622 458 SFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVV 537 (1042)
Q Consensus 458 ~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~sv~~lP~~~~~~~ 537 (1042)
.+..-....+++.++..++. .|.| +|--|+..++.|..-+.-+..=.+..+++.....+.=. .+++..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~--dDiL---------vqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~-~~dp~~ 261 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDS--DDIL---------VQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS-EEDPRL 261 (503)
T ss_pred HHHHHHhccHHHHHHHHhcC--ccHH---------HHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc-ccCCcc
Confidence 12222223477777776765 3554 66779999999987433343334444554443222211 111212
Q ss_pred HH-HHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCc
Q 001622 538 NP-LIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSC 616 (1042)
Q Consensus 538 ~~-l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~ 616 (1042)
.. ++-..+..+..+...++. .-....-.+++.+..++.|...-+|.-|+.+...+=. .+.|-.
T Consensus 262 ~~~~l~g~~~f~g~la~~~~~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-----t~~G~~-------- 325 (503)
T PF10508_consen 262 SSLLLPGRMKFFGNLARVSPQ---EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-----TVEGKQ-------- 325 (503)
T ss_pred cchhhhhHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-----CHHHHH--------
Confidence 22 233444555555443221 1233445666777788999999999999987653321 112201
Q ss_pred ccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHH
Q 001622 617 THIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFS 678 (1042)
Q Consensus 617 ~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~ 678 (1042)
-|... ....+-+.+..++-.+.....++|..+++|+..+|.
T Consensus 326 ----~L~~~-----------------~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 326 ----LLLQK-----------------QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred ----HHHhh-----------------cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 11011 112566667778888889999999999999998873
No 22
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.78 E-value=26 Score=32.63 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=59.7
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchhHHH
Q 001622 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFN 823 (1042)
Q Consensus 744 i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~VV~~ 823 (1042)
...+++-|.|+....--.+-.+|..+++.+- .- ..+++.|++-... .-...++-+.-.+++++..||..|+.+|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~-~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~~p~~vl~- 80 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EP-VIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADRHPDEVLP- 80 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cc-hhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHChHHHHH-
Confidence 3456778889887766667778888888887 11 2237778775554 444456789999999999999999999996
Q ss_pred HHh
Q 001622 824 EVL 826 (1042)
Q Consensus 824 ~LL 826 (1042)
.|+
T Consensus 81 ~L~ 83 (92)
T PF10363_consen 81 ILL 83 (92)
T ss_pred HHH
Confidence 877
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=70.61 E-value=1.1e+02 Score=32.70 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=88.9
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhcc--ch
Q 001622 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN--SK 819 (1042)
Q Consensus 742 ~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~--~~ 819 (1042)
+++..+...+.|....-+..|+..+..+...-|..+..- +..++..+...+.. ....+++.+..++..+.++-. ++
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~ 130 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPK 130 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--H
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHH
Confidence 444566677778777788999999999999999998444 88888888886655 446799999999999999876 55
Q ss_pred hHHHHHhhhhcccccccccccccCCCChhhHHHHh-ccCcchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccch
Q 001622 820 IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAF-SQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDD 898 (1042)
Q Consensus 820 VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al-~~~~~l~~~vL~~LL~~L~~~p~~~~~~~~~~~~~~~t~~~~~~ 898 (1042)
++. ..+ .... ..++..-...+..+...++..+..... . ... .
T Consensus 131 ~~~-~~l------------------------~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~-----l--~~~----~- 173 (228)
T PF12348_consen 131 ILL-EIL------------------------SQGLKSKNPQVREECAEWLAIILEKWGSDSSV-----L--QKS----A- 173 (228)
T ss_dssp HHH-HHH------------------------HHHTT-S-HHHHHHHHHHHHHHHTT-----GG-----G----H----H-
T ss_pred HHH-HHH------------------------HHHHhCCCHHHHHHHHHHHHHHHHHccchHhh-----h--ccc----c-
Confidence 644 444 1222 233445566777777777776621111 0 000 0
Q ss_pred hhHHHHHHHHHHHHccCCcchHHHHHHhhhHHHH
Q 001622 899 DILQAAILALTAFFRGGGKVGKKAVEKSYAPVLA 932 (1042)
Q Consensus 899 ~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~ 932 (1042)
.--....++...+..++.+.|++.++.|..+..
T Consensus 174 -~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 174 -FLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 002355677777887776777777776665543
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=69.71 E-value=8.4 Score=31.64 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=43.5
Q ss_pred chhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 001622 13 HLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIV 64 (1042)
Q Consensus 13 ~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ 64 (1042)
+.|-+++..|..+.....+.++...+.++..+..+|.|++..||.+-+..+.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4678888888887777777888899999999999999998999988776654
No 25
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=14 Score=42.30 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=84.1
Q ss_pred HhhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhh
Q 001622 426 LLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLV 505 (1042)
Q Consensus 426 ~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~ 505 (1042)
++++.+..+|..-.+. ||.+++++...+ .+.+.. --+..++.+...++++. +|.+|+-|++.|+
T Consensus 132 ~l~~~~~~lR~~Aa~V---igt~~qNNP~~Q-e~v~E~--~~L~~Ll~~ls~~~~~~----------~r~kaL~AissLI 195 (342)
T KOG2160|consen 132 YLENSDAELRELAARV---IGTAVQNNPKSQ-EQVIEL--GALSKLLKILSSDDPNT----------VRTKALFAISSLI 195 (342)
T ss_pred HhcCCcHHHHHHHHHH---HHHHHhcCHHHH-HHHHHc--ccHHHHHHHHccCCCch----------HHHHHHHHHHHHH
Confidence 5577888888765555 455555542221 222221 13455666665566555 8999999999999
Q ss_pred ccCCCCChhHHHHHHH--Hhh-hccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCC-CcHHHHHHHHHhHhHhhcChh
Q 001622 506 TVEPKLTIETRNHVMK--ATL-GFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGR-SRADQLLHILRQIDQYVSSPV 581 (1042)
Q Consensus 506 ~L~P~L~~e~~~~ll~--~c~-sv~~lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~~-~~~~~L~~il~~l~pWl~S~k 581 (1042)
+-.|+=..+... ++ .++ -++.- +.....+......++..++..+..|+. .+...++. .+..|..+..
T Consensus 196 Rn~~~g~~~fl~--~~G~~~L~~vl~~----~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~---~~~~l~~~l~ 266 (342)
T KOG2160|consen 196 RNNKPGQDEFLK--LNGYQVLRDVLQS----NNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR---VLENLISSLD 266 (342)
T ss_pred hcCcHHHHHHHh--cCCHHHHHHHHHc----CCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH---HHHHHhhccc
Confidence 876664222110 00 122 22221 122344667778888888888775422 12334444 4445555555
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 001622 582 EYQRRRSCLAVYEMLLKFR 600 (1042)
Q Consensus 582 ~hEReRA~~~~~~lL~~~~ 600 (1042)
.+-++-|+......+.-+.
T Consensus 267 ~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 267 FEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6666666666666666443
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.56 E-value=3.6e+02 Score=34.34 Aligned_cols=341 Identities=19% Similarity=0.179 Sum_probs=176.9
Q ss_pred HHHHHHhhhhcCCCC--hhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCc--chhhHHHHHHHHhhhCHHHH
Q 001622 280 LGNAFTEQYVLYTPD--DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPT--NRLGLAKAMGLVAASHLDAV 355 (1042)
Q Consensus 280 L~~el~~q~~~y~~~--~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~--ereG~A~~~G~~A~~Hld~v 355 (1042)
|.+.+++|-+.|.++ +.-|+- =-|+++.-+.|.|. .|. |...+++ .+.++|. +||--+.|||-+=.+-=..-
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAA-g~CL~l~A~~~~D~-Iv~-~Vl~Fie-e~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAA-GVCLMLFAQCVGDD-IVP-HVLPFIE-ENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHH-HHHHHHHHHHhccc-chh-hhHHHHH-HhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 444555555555433 122211 13455555556553 444 8888888 4555554 67888899997665544433
Q ss_pred HHHHHHHHhhhccccchhhhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHh-hccCh-h
Q 001622 356 LEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLL-HVRHH-T 433 (1042)
Q Consensus 356 L~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~-~~kd~-~ 433 (1042)
|..+ .. .....+...++|+.- .+|.|..-++|.++...|...+-.-... .+++.+. ...|. -
T Consensus 400 Lt~i---V~----qalp~ii~lm~D~sl-----~VkdTaAwtlgrI~d~l~e~~~n~~~l~----~~l~~l~~gL~DePr 463 (859)
T KOG1241|consen 400 LTPI---VI----QALPSIINLMSDPSL-----WVKDTAAWTLGRIADFLPEAIINQELLQ----SKLSALLEGLNDEPR 463 (859)
T ss_pred hhHH---Hh----hhhHHHHHHhcCchh-----hhcchHHHHHHHHHhhchhhcccHhhhh----HHHHHHHHHhhhCch
Confidence 3333 22 123345556666552 5678888999999999985443322232 3333333 22332 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--cCCCCCCCCHHHHHHHHHHHhccCC-CCcccCchhhHHHHHHHHHHHhhhhhccCCC
Q 001622 434 AKQAVITAIDLLGRAVINAAE--NGASFPLKKRDQLLDYILTLMGREE-NDSFADSSIELLHTQALALSACTTLVTVEPK 510 (1042)
Q Consensus 434 lK~s~l~si~~i~~Al~~~~~--~~~~f~f~~k~eLl~~l~~li~~Ep-~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~ 510 (1042)
+=.+.=.+...+++|...+.. ++.++.-+.-..+++-++.....+. .++ . .|.-|..|+..+++--|.
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs---N------LR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQS---N------LRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchh---h------HHHHHHHHHHHHHHcCcH
Confidence 333334445555555443321 1112333445566666665443322 122 2 677899999999987665
Q ss_pred CChhHHHHHHHH-------hhh--ccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChh
Q 001622 511 LTIETRNHVMKA-------TLG--FFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPV 581 (1042)
Q Consensus 511 L~~e~~~~ll~~-------c~s--v~~lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k 581 (1042)
.-.....++... |++ +.++ .+....+.|-..|.+-|+.++++..+|-++..+.++. .+..-+.|.+
T Consensus 535 ~vy~~v~~~~l~il~kl~q~i~~~~l~~--~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~---lflri~~s~~ 609 (859)
T KOG1241|consen 535 DVYPMVQKLTLVILEKLDQTISSQILSL--ADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG---LFLRIFESKR 609 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH---HHHHHHcCCc
Confidence 533333332222 221 1111 1112223344567777888888887765544555544 4444444422
Q ss_pred H-HHhhHHHHHHHHHHH----HHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhc
Q 001622 582 E-YQRRRSCLAVYEMLL----KFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLP 656 (1042)
Q Consensus 582 ~-hEReRA~~~~~~lL~----~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~p 656 (1042)
+ --.+-|+..+..+.. .|.++ -.....||... +.+|. +-+-.-.-||+.+=
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~ky------------m~~f~pyL~~g-L~n~~-----------e~qVc~~aVglVgd 665 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKY------------MPAFKPYLLMG-LSNFQ-----------EYQVCAAAVGLVGD 665 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHH------------HHHHHHHHHHH-hhcch-----------HHHHHHHHHHHHHH
Confidence 2 234455554433322 22221 11122233222 12222 22344556788888
Q ss_pred CccCCChhHHHHHHHHHHHHHH
Q 001622 657 RCADTDSEVRKISAQILDQLFS 678 (1042)
Q Consensus 657 rC~D~~~~ir~~A~e~i~~Ll~ 678 (1042)
.|.--...++..+-+-+..|.+
T Consensus 666 l~raL~~~i~py~d~~mt~Lvq 687 (859)
T KOG1241|consen 666 LARALEDDILPYCDELMTVLVQ 687 (859)
T ss_pred HHHHHHhhhhhHHHHHHHHHHH
Confidence 8888888888888888888863
No 27
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=65.75 E-value=31 Score=32.50 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHH
Q 001622 736 TKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1042)
Q Consensus 736 ~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~ 805 (1042)
....+..++...+.++.|.+.-.-..||+.|-.+.+..+.++-.. .++|.++++. +....++++|+++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~k-l~~D~d~~Vr~~a 88 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCK-LSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHcCCchhHHHHH
Confidence 455567788889999999988888999999999999977777566 8889998888 7777778888876
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=65.14 E-value=7.2 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.1
Q ss_pred hhcCccCCChhHHHHHHHHHHHHH
Q 001622 654 YLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 654 l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
+.-.+.||+++||..|+.|+..+.
T Consensus 5 l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 5 LLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334578999999999999998775
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=64.82 E-value=3.9e+02 Score=34.04 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=63.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~ 805 (1042)
.||.-=..+.+..|-.-..+.++|.|...++.--++|..-+-.+-+.-| .+|| +..+...| .+.+.+.|...
T Consensus 909 ~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG----PqdV---LatLlnnL-kvqeRq~RvcT 980 (1172)
T KOG0213|consen 909 TIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG----PQDV---LATLLNNL-KVQERQNRVCT 980 (1172)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC----HHHH---HHHHHhcc-hHHHHHhchhh
Confidence 4444445789999999999999999999988887888877777766655 3332 23333322 23455677777
Q ss_pred HHHHHHHhhhccchhHHHHHh
Q 001622 806 LGAISCLAENTNSKIVFNEVL 826 (1042)
Q Consensus 806 l~aI~lLa~~h~~~VV~~~LL 826 (1042)
--||..-|+..-+=.|..+|+
T Consensus 981 tvaIaIVaE~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 981 TVAIAIVAETCGPFTVLPALM 1001 (1172)
T ss_pred hhhhhhhhhhcCchhhhHHHH
Confidence 778888887765544444666
No 30
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.24 E-value=2.1e+02 Score=38.96 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCc
Q 001622 562 RADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPS 641 (1042)
Q Consensus 562 ~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~ 641 (1042)
.|+-|..++.+|.-|+.|+++.+|..|+...-+++...-. | +..+ . |
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~------~-------------l~~~-------~------~- 299 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS------Q-------------LSET-------Y------D- 299 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh------h-------------hccc-------c------h-
Confidence 3788889999999999999999999999999999884421 1 2211 1 1
Q ss_pred hhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001622 642 REALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 642 ~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
.+-..|.=||.|-..+||...++++...|
T Consensus 300 -------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 300 -------DLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred -------HHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 11122444699999999999999988775
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.06 E-value=60 Score=36.20 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcH-HHHHHHHHHHHHHhhhccchh
Q 001622 757 QSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDK-HLRLETLGAISCLAENTNSKI 820 (1042)
Q Consensus 757 ~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~-~~r~~~l~aI~lLa~~h~~~V 820 (1042)
.+..+|...+..+++.+...- +. +.+|++.++.+..--... ..|..+.+.+..|.++|..++
T Consensus 55 ~~~~~~l~gl~~L~~~~~~~~-~~-~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l 117 (262)
T PF14500_consen 55 ACVQPALKGLLALVKMKNFSP-ES-AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL 117 (262)
T ss_pred hhHHHHHHHHHHHHhCcCCCh-hh-HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 455566666777775544322 33 778888887754443333 689999999999999986543
No 32
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=61.61 E-value=3.6e+02 Score=32.62 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHH
Q 001622 439 ITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNH 518 (1042)
Q Consensus 439 l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ 518 (1042)
++++..++.+|+ .|......++-....+++..+.+.. .|+.++..+..+++-.-.-+.-+|..
T Consensus 8 ~~a~~~l~~~i~-------~~~~~~i~~iW~~~~DLi~~~~p~e----------~R~~~~~ll~~~i~~~~~~~~~~R~~ 70 (464)
T PF11864_consen 8 IKAAEELCESIQ-------KYPLSSIEEIWYAAKDLIDPNQPSE----------ARRAALELLIACIKRQDSSSGLMRAE 70 (464)
T ss_pred HHHHHHHHHHHH-------hCCchHHHHHHHHHhhhcCCCCCHH----------HHHHHHHHHHHHHHccccccHHHHHH
Confidence 456677777764 3677888888888889887665444 89999999999987655434555666
Q ss_pred HHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhc
Q 001622 519 VMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVS 578 (1042)
Q Consensus 519 ll~~c~sv~~lP~~~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~ 578 (1042)
+++.. .-|+. .++ +....++|.+| -+++ |--...-.++.+.|..|+.
T Consensus 71 fF~~I----~~~~~-~~d----~~~~l~aL~~L-T~~G---rdi~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 71 FFRDI----SDPSN-DDD----FDLRLEALIAL-TDNG---RDIDFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHH----hcCCC-chh----HHHHHHHHHHH-HcCC---cCchhcccchHHHHHHHHH
Confidence 55544 22211 122 22333333333 2232 2222235567788888884
No 33
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=61.16 E-value=3.9e+02 Score=37.87 Aligned_cols=320 Identities=11% Similarity=0.076 Sum_probs=157.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCC
Q 001622 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1042)
Q Consensus 430 kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P 509 (1042)
+...+-+-.+.++.+++.-.-...+ -..|.| -.++++=+..+|+..... .+|.+++.++.+++.-+.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eE-L~~f~F--QkefLkPfe~im~~s~~~----------eVrE~ILeCv~qmI~s~~ 1215 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREE-LANYNF--QNEFMKPFVIVMRKSNAV----------EIRELIIRCVSQMVLSRV 1215 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhh-hhchhH--HHHHHHHHHHHHHhcCch----------HHHHHHHHHHHHHHHHHH
Confidence 3444555556667677766554322 234555 358888888888754322 289999999998874311
Q ss_pred CCChhHHHHHHHHhhhccccCCCCC--CchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhH
Q 001622 510 KLTIETRNHVMKATLGFFALPNDPI--DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRR 587 (1042)
Q Consensus 510 ~L~~e~~~~ll~~c~sv~~lP~~~~--~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReR 587 (1042)
. .....++ +.|++|+.+..+. .-++.-|+.+...+..-+..-+.. ..+.+..++.=+..+-+...+ -..
T Consensus 1216 ~-nIkSGWk---tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~---~~~~F~DlV~cL~~Fa~q~~~--~nI 1286 (1780)
T PLN03076 1216 N-NVKSGWK---SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITET---ETTTFTDCVNCLIAFTNSRFN--KDI 1286 (1780)
T ss_pred h-hhhcCcH---HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcccc---chhHHHHHHHHHHHHHhCcCc--ccc
Confidence 0 0011111 2445555443221 122333454444443333222110 147788888888888866544 557
Q ss_pred HHHHHHHHHH---HHHhhhcccccccCCCCCcccchhhhh----ccc-cCCCCCCCcccCCch-hhhhhhhHHHHhhcCc
Q 001622 588 SCLAVYEMLL---KFRTLCVIGYCALGCHGSCTHIKQIDR----AVL-GNFSNLPSAYVLPSR-EALCLGNRVIMYLPRC 658 (1042)
Q Consensus 588 A~~~~~~lL~---~~~~~~~~~~c~~~~~~~~~~~~~l~~----~~~-~~~~~~ps~~~~p~~-~~~~lG~Lvg~l~prC 658 (1042)
++.++..++. ++.+..+... ........ ... ..+.+....+.-.+. ....+=-|.| |.=.|
T Consensus 1287 SL~AI~lL~~~~~~La~~~~~~~---------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~-Ls~l~ 1356 (1780)
T PLN03076 1287 SLNAIAFLRFCATKLAEGDLGSS---------SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAG-LSELS 1356 (1780)
T ss_pred cHHHHHHHHHHHHHHHhcccccc---------ccccccccccccccccccccccccccccchhHHHHHHHHHHH-HHHHh
Confidence 7777766663 2322110000 00000000 000 000000000000000 0122333333 33358
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhh--hhhhcchhHHHHHhhcCC---------------CCC--
Q 001622 659 ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELS--YGALSSLEDVIAILRSDA---------------SID-- 719 (1042)
Q Consensus 659 ~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~--~~~l~~l~~~~~~~~~~~---------------~~~-- 719 (1042)
.|+..+||..|++.+.-.| .. +.+.-+ .. -|. +. .-+=++.+.++... ..+
T Consensus 1357 ~D~RlEVR~~ALqtLF~iL---~~---yG~~Fs-~~-~W~~if~--~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1357 FDPRPEIRKSALQVLFDTL---RN---HGHLFS-LP-LWERVFE--SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred cCCcHHHHHHHHHHHHHHH---HH---hhccCC-HH-HHHHHHH--HHHHHHHHHHHHhhccccccccccccccccccch
Confidence 8999999999887765554 32 211111 10 111 11 00111122212110 000
Q ss_pred Ch---------HHHHHHHHHHHccCCh--hHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHH
Q 001622 720 PS---------EVFNRIVSSVCILLTK--DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQS 788 (1042)
Q Consensus 720 ~~---------~~~~~i~~~i~~~L~~--~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~ 788 (1042)
+. ..+..++..|.+++.. ..|.+|+.-+...++..+..-+.-++.-|..++...|.++.+++-.+|++.
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~ 1506 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLS 1506 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 11 1123455555555542 356777777777788888888888888999999999999988776666666
Q ss_pred HHH
Q 001622 789 LLS 791 (1042)
Q Consensus 789 i~~ 791 (1042)
+..
T Consensus 1507 ~~~ 1509 (1780)
T PLN03076 1507 LKE 1509 (1780)
T ss_pred HHH
Confidence 655
No 34
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=59.97 E-value=3.6e+02 Score=32.05 Aligned_cols=322 Identities=11% Similarity=0.130 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHhcCCchh---HHHH-HHHHHHHHHHHHHhhccChh--HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHH
Q 001622 392 AALALMYGYAAKYAPSTV---IEAR-IDALVGTNMLSRLLHVRHHT--AKQAVITAIDLLGRAVINAAENGASFPLKKRD 465 (1042)
Q Consensus 392 s~l~l~YG~va~~ap~~~---ll~r-ve~~I~~~i~~~~~~~kd~~--lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~ 465 (1042)
-.++.++-++......+. -..+ .+.++++.++..+...-+.. .....+..+..+.+.+.+. ..-.+-.
T Consensus 61 ~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~------l~~~~q~ 134 (415)
T PF12460_consen 61 HAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRS------LSPEKQQ 134 (415)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHh------CCHHHHH
Confidence 345556666655554433 2222 34445555555443221111 3346666666666666553 1122333
Q ss_pred HHHHHHHHHhc----cCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhhh-ccccCCCCCCchHHH
Q 001622 466 QLLDYILTLMG----REENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLG-FFALPNDPIDVVNPL 540 (1042)
Q Consensus 466 eLl~~l~~li~----~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~s-v~~lP~~~~~~~~~l 540 (1042)
++++.+..+.- ..|...-.+. +.- ..++.......-++.++|.....+-.++++.++. ...- ++ +..
T Consensus 135 ~~~~~~~~lf~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~-----~~-~~~ 206 (415)
T PF12460_consen 135 EILDELYSLFLSPKSFSPFQPSSST-ISE-QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS-----ED-EFS 206 (415)
T ss_pred HHHHHHHHHHccccccCCCCccccc-ccc-ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC-----CC-hHH
Confidence 45555554332 1222211110 000 0223344455667778888876666667776662 2221 11 445
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhh-cChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccc
Q 001622 541 IDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYV-SSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHI 619 (1042)
Q Consensus 541 ~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl-~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~ 619 (1042)
..+..+++..++-+.+. .+.+..+++.+..=+ .+...-.|.+++.+..-+.|-..-+
T Consensus 207 ~~~~~~~la~LvNK~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R----------------- 264 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPD-----DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR----------------- 264 (415)
T ss_pred HHHHHHHHHHHHcCCCC-----hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc-----------------
Confidence 66777888999888554 245666666665555 5666778999998888777755422
Q ss_pred hhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhh
Q 001622 620 KQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSY 699 (1042)
Q Consensus 620 ~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~ 699 (1042)
.. +.....+.++++++.= ++++..|+++...++. |. +..
T Consensus 265 ----~~---------------~~~~~~~~~L~~lL~~------~~~g~~aA~~f~il~~-------------d~--~~~- 303 (415)
T PF12460_consen 265 ----GH---------------PLATELLDKLLELLSS------PELGQQAAKAFGILLS-------------DS--DDV- 303 (415)
T ss_pred ----CC---------------chHHHHHHHHHHHhCC------hhhHHHHHHHHhhHhc-------------Cc--HHh-
Confidence 11 1123467777776543 8899999999987751 10 000
Q ss_pred hhhcchhHHHHHhhcCCCCCChH-HH-HHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhcccc
Q 001622 700 GALSSLEDVIAILRSDASIDPSE-VF-NRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNEL 777 (1042)
Q Consensus 700 ~~l~~l~~~~~~~~~~~~~~~~~-~~-~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l 777 (1042)
+++ ...-... +| +++.. ..+-.++++..+.+...-..--.+|..+++.--.++
T Consensus 304 --l~~-----------~~~a~vklLykQR~F~------------~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 304 --LNK-----------ENHANVKLLYKQRFFT------------QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred --cCc-----------cccchhhhHHhHHHHH------------HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH
Confidence 000 0000011 11 12221 112222344444332222222334555555433333
Q ss_pred chhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhc
Q 001622 778 SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 778 ~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h 816 (1042)
-..++++|+.-+.+.| +..++.++..++.++..+.+..
T Consensus 359 l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcC
Confidence 2334777777777766 6666679999999999888776
No 35
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.63 E-value=39 Score=35.19 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhh
Q 001622 544 LITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQID 623 (1042)
Q Consensus 544 l~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~ 623 (1042)
..-.+..+...- +.-+...++.+..+++++...-|+.|+.+..+|+..- +++
T Consensus 8 ~i~~l~DL~~r~-------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---------------------~ik 59 (178)
T PF12717_consen 8 AIIALGDLCIRY-------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---------------------MIK 59 (178)
T ss_pred HHHHHHHHHHhC-------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---------------------cee
Confidence 344445555554 3556677889999999999999999999999888721 122
Q ss_pred hccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001622 624 RAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 624 ~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
. =|+++..+.-.-.|+|++||..|..++..+.
T Consensus 60 ~----------------------k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 60 V----------------------KGQLFSRILKLLVDENPEIRSLARSFFSELL 91 (178)
T ss_pred e----------------------hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 2444333444459999999999999988775
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=59.30 E-value=5e+02 Score=33.53 Aligned_cols=416 Identities=10% Similarity=0.063 Sum_probs=201.0
Q ss_pred HHHHHHHH-HHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHH-----HHHHHHHHhhhccccchh
Q 001622 300 LLHRCLGI-LLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAV-----LEMLKGILDNIGQSLFQR 373 (1042)
Q Consensus 300 fL~k~lG~-~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~v-----L~~L~~~~k~~~~~~~~~ 373 (1042)
-+.|++++ +|+.....+.+..-+..+-+...+.++.-|.--|.|++-+-...-+.+ ++.|.++
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L----------- 187 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL----------- 187 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH-----------
Confidence 34555543 555667777777666666666677888888888888877654332222 1222222
Q ss_pred hhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhhh
Q 001622 374 LLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAA 453 (1042)
Q Consensus 374 ~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~~~ 453 (1042)
..|+.. .+.+..+..+-.|..+.|.. + .+....+..++..+. ..++-.+..+++.+. +- .+.
T Consensus 188 ----L~D~dp-----~Vv~nAl~aL~eI~~~~~~~-l--~l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL~---~y-~P~- 249 (746)
T PTZ00429 188 ----LNDNNP-----VVASNAAAIVCEVNDYGSEK-I--ESSNEWVNRLVYHLP-ECNEWGQLYILELLA---AQ-RPS- 249 (746)
T ss_pred ----hcCCCc-----cHHHHHHHHHHHHHHhCchh-h--HHHHHHHHHHHHHhh-cCChHHHHHHHHHHH---hc-CCC-
Confidence 223322 24445555556666666532 2 122223333443332 234444555555552 21 111
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhh-hccccCCC
Q 001622 454 ENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPND 532 (1042)
Q Consensus 454 ~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~-sv~~lP~~ 532 (1042)
... ....+++.+...++... . . | ++.|+..+.++.|....+-...++.-.. ..++|-+
T Consensus 250 ~~~------e~~~il~~l~~~Lq~~N-~----A------V---Vl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s- 308 (746)
T PTZ00429 250 DKE------SAETLLTRVLPRMSHQN-P----A------V---VMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR- 308 (746)
T ss_pred CcH------HHHHHHHHHHHHhcCCC-H----H------H---HHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-
Confidence 100 12356666665555321 1 2 4 6666666666655554333333322111 2233311
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCC
Q 001622 533 PIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGC 612 (1042)
Q Consensus 533 ~~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~ 612 (1042)
.+.+.=|-++.++ ..++... +.-++.-++++..- -++..+-|.+++.++..+-.
T Consensus 309 --s~~eiqyvaLr~I-~~i~~~~-------P~lf~~~~~~Ff~~-~~Dp~yIK~~KLeIL~~Lan--------------- 362 (746)
T PTZ00429 309 --RDAETQYIVCKNI-HALLVIF-------PNLLRTNLDSFYVR-YSDPPFVKLEKLRLLLKLVT--------------- 362 (746)
T ss_pred --CCccHHHHHHHHH-HHHHHHC-------HHHHHHHHHhhhcc-cCCcHHHHHHHHHHHHHHcC---------------
Confidence 1123334444443 3333333 33333322332222 24455667777776643322
Q ss_pred CCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 001622 613 HGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSG 692 (1042)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~ 692 (1042)
-.+.+.++..|.=-+.|.+.+++..|+.+|..+- ..++
T Consensus 363 -------------------------------e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA---~k~~-------- 400 (746)
T PTZ00429 363 -------------------------------PSVAPEILKELAEYASGVDMVFVVEVVRAIASLA---IKVD-------- 400 (746)
T ss_pred -------------------------------cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---HhCh--------
Confidence 0145666666666777999999999999998662 3211
Q ss_pred CchhhhhhhhcchhHHHHHhhcCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHHH
Q 001622 693 IDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAI--CDRTKQSAEGAIQAVVEFV 770 (1042)
Q Consensus 693 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~L~~~el~~~i~~ll~~L--~d~~~~~~~~A~~~L~~~l 770 (1042)
...++.. +.+.+.++.+.. ...+.. ...+.+-++-|... .+..+.+.+ .+-....+.+|..++.+
T Consensus 401 ~~a~~cV------~~Ll~ll~~~~~-~v~e~i-~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILG-- 467 (746)
T PTZ00429 401 SVAPDCA------NLLLQIVDRRPE-LLPQVV-TAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLG-- 467 (746)
T ss_pred HHHHHHH------HHHHHHhcCCch-hHHHHH-HHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHH--
Confidence 1112332 222222222111 111111 12222223333321 233333332 23334446666666544
Q ss_pred hhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccch---hHHHHHhhhhcccccccccccccCCCCh
Q 001622 771 TKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK---IVFNEVLATAGKDIVTKDISRLRGGWPM 847 (1042)
Q Consensus 771 ~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~---VV~~~LL~~~~~~~~~~d~~~~~~plP~ 847 (1042)
+.+..+ +. .+++++.+...... ..+.+|-.+|-+..=|.-+.+++ .+. .+|..+.++.-..|+=
T Consensus 468 -Ey~~~I-~~-a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p~~~~~~l~-~vL~~~t~~~~d~DVR-------- 534 (746)
T PTZ00429 468 -EYCDFI-EN-GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRDPQGMEPQLN-RVLETVTTHSDDPDVR-------- 534 (746)
T ss_pred -hhHhhH-hh-HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHhcCCChhHH--------
Confidence 334445 45 77777666543333 34578988888888777666653 354 6665543322222222
Q ss_pred hh---HHHHhccCcc
Q 001622 848 QD---AFHAFSQHAV 859 (1042)
Q Consensus 848 d~---~W~al~~~~~ 859 (1042)
|| +|+.+..++.
T Consensus 535 DRA~~Y~rLLs~~~~ 549 (746)
T PTZ00429 535 DRAFAYWRLLSKGIT 549 (746)
T ss_pred HHHHHHHHHHcCCCc
Confidence 55 7999988754
No 37
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.78 E-value=3.9e+02 Score=32.13 Aligned_cols=86 Identities=9% Similarity=0.082 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhcc-ccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhc
Q 001622 738 DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGN-ELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 738 ~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~-~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h 816 (1042)
.....-+++.+..|.....+...|. .+|..++..-.. .+ +..++.|+..++.+|.+-..+.-.+....-++.++-.|
T Consensus 197 ~~~l~~iLgvFQkLi~sk~~D~~gF-~LL~~iv~~~p~~~l-~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASKANDHYGF-DLLESIVENLPPEAL-EPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp -S-CHHHHHHHHHHHT-TTCHHHHH-HHHHHHHHHS-HHHH-GGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCCcchHHH-HHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 3445677888888888877766655 688888877444 56 55599999999999999888888888888888888887
Q ss_pred cchhHHHHHh
Q 001622 817 NSKIVFNEVL 826 (1042)
Q Consensus 817 ~~~VV~~~LL 826 (1042)
....+. ..+
T Consensus 275 g~~~li-~~i 283 (435)
T PF03378_consen 275 GPDFLI-QTI 283 (435)
T ss_dssp -HHHHH-HHH
T ss_pred CHHHHH-HHH
Confidence 665554 555
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=58.52 E-value=2.5e+02 Score=38.29 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=24.3
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHH
Q 001622 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQL 676 (1042)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~L 676 (1042)
+||.|||+|.+.|.-.--.|-..|--++-..
T Consensus 482 ALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 482 ALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred hHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 8999999999999887777766665555444
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=56.43 E-value=18 Score=32.23 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=43.7
Q ss_pred hhhhhh-cccccchhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Q 001622 2 FLLNKC-RLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMA 67 (1042)
Q Consensus 2 fll~~l-~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama 67 (1042)
+|+..| ++.+...|.-++.+|.. -+.+.++..+..++.|++..||.+.+..+..+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~----------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGE----------LGDPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHC----------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 678888 77788999998888882 233466777777889999999999888877664
No 40
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=54.69 E-value=31 Score=32.20 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=52.2
Q ss_pred hhhcccccchhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhc
Q 001622 5 NKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASH 69 (1042)
Q Consensus 5 ~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~ 69 (1042)
..+....-.+|..+|..||+||.+.+ ......+.|+..+...+.|+..-|=.+.++...+||..
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34556667899999999999999766 33345688888888899999999998899998988864
No 41
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.24 E-value=23 Score=33.99 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=51.4
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHH----hh-hhccHHHHHHHHHHHHHHh
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKS----LL-DEQNLAVQKAISELIVVMA 67 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~----~l-~d~~~kVr~al~~~I~ama 67 (1042)
++..||++++.+....||.+|-+++..+++.... ++.++.+.++. .. .+.+..||..+.++|.+-+
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5778999999999999999999999988876432 34455666552 22 3678999999999987654
No 42
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=51.59 E-value=3.4e+02 Score=35.27 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=130.5
Q ss_pred HHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchh
Q 001622 564 DQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSRE 643 (1042)
Q Consensus 564 ~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~ 643 (1042)
+.+..+-+++..=|.|++=.+|..|+.-....|.--. ... .
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~---------------------~~~------------------~ 289 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK---------------------KEI------------------V 289 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc---------------------ccc------------------c
Confidence 3344444555555667776799999887766665110 000 1
Q ss_pred hhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHH
Q 001622 644 ALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEV 723 (1042)
Q Consensus 644 ~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 723 (1042)
..+.|.+...+-.+=-|.|..+-..|++++..+.+- ++. + ..++ .. ..+..+++..++. -+.+
T Consensus 290 ~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~---lr~--~-~~~~----~~---~v~p~lld~lkek----k~~l 352 (815)
T KOG1820|consen 290 KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK---LRP--L-FRKY----AK---NVFPSLLDRLKEK----KSEL 352 (815)
T ss_pred cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh---cch--h-hHHH----HH---hhcchHHHHhhhc----cHHH
Confidence 125777777788899999999999999999877531 111 0 0011 00 1111111111111 1122
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccc-cchhcHhhHHHHHHHHhhhcCcHHHH
Q 001622 724 FNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNE-LSETDVSRTTQSLLSAAVHITDKHLR 802 (1042)
Q Consensus 724 ~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~-l~e~dV~eIv~~i~~~l~~i~~~~~r 802 (1042)
.--+.+++-..+...-+.+.....++++.+.+++--.....+++..++.-|+. .+..+|-..+..++. ....+++.+|
T Consensus 353 ~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR 431 (815)
T KOG1820|consen 353 RDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVR 431 (815)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHH
Confidence 22334444444446677888888999999998887777778888888888743 322226666666665 5566778999
Q ss_pred HHHHHHHHHHhhhccchhHHHHHh
Q 001622 803 LETLGAISCLAENTNSKIVFNEVL 826 (1042)
Q Consensus 803 ~~~l~aI~lLa~~h~~~VV~~~LL 826 (1042)
..+++++..+.+.|.++++. .+|
T Consensus 432 ~Aa~e~~~~v~k~~Ge~~~~-k~L 454 (815)
T KOG1820|consen 432 KAALEAVAAVMKVHGEEVFK-KLL 454 (815)
T ss_pred HHHHHHHHHHHHHhhHHHHH-HHH
Confidence 99999999999999999997 888
No 43
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=51.45 E-value=1.8e+02 Score=34.11 Aligned_cols=181 Identities=18% Similarity=0.255 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhccchhhh--HhhHHHHHhhcccccccchhhhHHHHHHHHHHhhccCCCccc-ccccCCCCCCCHH
Q 001622 111 TELRAICEKGLLLLTITIPEMQ--HILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSNVML-SECKARDDIPNPE 187 (1042)
Q Consensus 111 ~~lr~~c~~~L~ll~ttv~~m~--~vLWP~LL~~i~p~~yT~al~~ick~l~~La~k~~~~~~~~~-i~~~~~~~lPsp~ 187 (1042)
+.+|.+|.+||-=++-.-+.+- .=--.-|+..++...|. .-.+++-.+.++...-..+. +. .++ ++ +
T Consensus 122 D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~-~~~~l~~~lL~lLd~p~tR~--yl~~~~----dL---~ 191 (371)
T PF14664_consen 122 DRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS-ISESLLDTLLYLLDSPRTRK--YLRPGF----DL---E 191 (371)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh-HHHHHHHHHHHHhCCcchhh--hhcCCc----cH---H
Confidence 4678899998877765544331 01114455666665565 66678888888865422110 10 000 00 1
Q ss_pred HHHHHHHHHhcCcc-----------cchhhHHHHHHHHHhhCCCCCcchhhhHHhhhhhhhhcccCCcccCCCcchHhhH
Q 001622 188 ELFARLVVLLHDPL-----------AREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETW 256 (1042)
Q Consensus 188 ~llaRlLvl~~~P~-----------~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~IP~Ll~~Le~~~~~~~~~~~q~~W 256 (1042)
.++| -..++. +-..-..++..+||+-...++-...+. .-|..|++.|.-.. .+=
T Consensus 192 ~l~a----pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~---------~~i 256 (371)
T PF14664_consen 192 SLLA----PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPN---------PEI 256 (371)
T ss_pred HHHH----hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCC---------HHH
Confidence 1111 111110 112346788999999999998887766 56788888886431 124
Q ss_pred HHHHHHHHHHhhhccccChHHHHHHHHHHhhhhcCCCC---------------------hhhHHHHHHHHHHHHhhcCCh
Q 001622 257 DDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPD---------------------DDHSALLHRCLGILLQKVADR 315 (1042)
Q Consensus 257 e~~Ll~fL~~sL~~i~d~~W~~~L~~el~~q~~~y~~~---------------------~~eK~fL~k~lG~~L~~~~~~ 315 (1042)
.+.+++.+-+-+. +.-..|....... +++..|... ..+..++=.++|+.|...-+.
T Consensus 257 r~~Ildll~dllr-ik~p~w~~~~~~~--~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~ 333 (371)
T PF14664_consen 257 RKAILDLLFDLLR-IKPPSWTESFLAG--RRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEA 333 (371)
T ss_pred HHHHHHHHHHHHC-CCCCCcccchhhc--ccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHc
Confidence 5566666666555 6667788776553 233333211 124466667777777776666
Q ss_pred hHHH
Q 001622 316 NYVC 319 (1042)
Q Consensus 316 ~~V~ 319 (1042)
.++.
T Consensus 334 gL~~ 337 (371)
T PF14664_consen 334 GLLE 337 (371)
T ss_pred ChHH
Confidence 6655
No 44
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.62 E-value=6.2e+02 Score=31.36 Aligned_cols=264 Identities=16% Similarity=0.116 Sum_probs=137.3
Q ss_pred hhhhcccccchhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHH----HHHHHHHHHhhcccc-cCCcCc
Q 001622 4 LNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQK----AISELIVVMASHCYL-IGPSGE 78 (1042)
Q Consensus 4 l~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~----al~~~I~ama~~~yl-~~~~g~ 78 (1042)
..++-.-|--.|+--+.=+++|-+.-+-.|-++.|.+..++=.+|+|++..||. .+.++......+.-- +- .
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~---~ 249 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY---D 249 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc---c
Confidence 345556677889999999999988666678899999999999999999999983 233444444422111 11 1
Q ss_pred cceeeeeecccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhhHhhHHHHHhhcccccccchhhhHHHH
Q 001622 79 LFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCRC 158 (1042)
Q Consensus 79 ~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~~vLWP~LL~~i~p~~yT~al~~ick~ 158 (1042)
.+++-++.+..- ++..+|... |. |-+=+-.+-|.+. +.-+.+|
T Consensus 250 ~~i~vlv~~l~s------------------s~~~iq~~a---l~-------------Wi~efV~i~g~~~---l~~~s~i 292 (675)
T KOG0212|consen 250 DMINVLVPHLQS------------------SEPEIQLKA---LT-------------WIQEFVKIPGRDL---LLYLSGI 292 (675)
T ss_pred cchhhccccccC------------------CcHHHHHHH---HH-------------HHHHHhcCCCcch---hhhhhhh
Confidence 244444443221 223344332 21 4333333333332 2222222
Q ss_pred HHHHHHhhccCCC-----------------------cccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHH
Q 001622 159 ISELCRHRSSSSN-----------------------VMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLY 215 (1042)
Q Consensus 159 l~~La~k~~~~~~-----------------------~~~i~~~~~~~lPsp~~llaRlLvl~~~P~~~~~~g~~~L~lL~ 215 (1042)
++.+..-....++ .-.+|| =+--.++.+.+- +....--+++|+-+.
T Consensus 293 l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~------~~ii~vl~~~l~-----~~~~~tri~~L~Wi~ 361 (675)
T KOG0212|consen 293 LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY------GSIIEVLTKYLS-----DDREETRIAVLNWII 361 (675)
T ss_pred hhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch------HHHHHHHHHHhh-----cchHHHHHHHHHHHH
Confidence 2222111110000 000222 122223332222 223344577777777
Q ss_pred hhCCCCCcchhhhHHhhhhhhhhcccCCcccC---------CCcchHhhHHHHHHHHHHHhhhcc-ccChHHHHHHHHHH
Q 001622 216 YLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLK---------LDPSYQETWDDMIINFLAESLDVV-QETDWLISLGNAFT 285 (1042)
Q Consensus 216 ~l~~~ih~~l~~~W~~~IP~Ll~~Le~~~~~~---------~~~~~q~~We~~Ll~fL~~sL~~i-~d~~W~~~L~~el~ 285 (1042)
.++......+-.+-+.-.+.|+.-|.+..+.- +--.+++.- -+.+|+..-|.-. .|......=|.-+.
T Consensus 362 ~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~~~~fl~sLL~~f~e~~~~l~~Rg~lII 439 (675)
T KOG0212|consen 362 LLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--NLRKFLLSLLEMFKEDTKLLEVRGNLII 439 (675)
T ss_pred HHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--cHHHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence 77776666666666666777777776652200 000000000 2244444333322 23444555566666
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 001622 286 EQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDW 324 (1042)
Q Consensus 286 ~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ 324 (1042)
+|+..+ .+-.-.|+-+..+|-...|-+|+.+.++.
T Consensus 440 RqlC~l----L~aE~IYr~~a~ILe~e~nl~FAstMV~~ 474 (675)
T KOG0212|consen 440 RQLCLL----LNAERIYRSIADILEREENLKFASTMVQA 474 (675)
T ss_pred HHHHHH----hCHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 777776 33345678888888888888777766543
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=7.2e+02 Score=32.03 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchhHHHH
Q 001622 745 HSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNE 824 (1042)
Q Consensus 745 ~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~VV~~~ 824 (1042)
.|.++.|.|++..--.-|-+++-.++... + |..|++.+..-|.+. ++..|..+-..|..+|..+-+.
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~------N-v~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~----- 419 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNES------N-VRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD----- 419 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccc------c-HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc-----
Confidence 46788888988777777877777776542 3 777888888888877 8889999999999999887552
Q ss_pred HhhhhcccccccccccccCCCChhhHHHHhccC-cchHHHHHHHHHHHhccCCCC
Q 001622 825 VLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH-AVLSFLFLEHLISALNQTPFV 878 (1042)
Q Consensus 825 LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~-~~l~~~vL~~LL~~L~~~p~~ 878 (1042)
..|-+|-|.+.|..- .-+-..+...++..+.+.+..
T Consensus 420 ------------------k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e 456 (866)
T KOG1062|consen 420 ------------------KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQE 456 (866)
T ss_pred ------------------chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcc
Confidence 223334433333211 123456667778877777544
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=47.96 E-value=31 Score=32.14 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=52.8
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhcc-chHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcc
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS-KRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHC 70 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~-k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~ 70 (1042)
+|..-|..++...|.+++..+..+....++.... ....++..+-.++.|++.+|++..+..+..++..+
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4566778888899999999999988754333222 22366677777788899999999999999998765
No 47
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.58 E-value=7e+02 Score=31.72 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=46.2
Q ss_pred HhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchh------HHHHHhhhhcccccccccccccCCCChhhHHHHhc
Q 001622 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI------VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFS 855 (1042)
Q Consensus 782 V~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~V------V~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~ 855 (1042)
+..||+.+++-|.. .+..+|..+.--|..||+.+-... +. .|+..+| ..--|+.|+.+.
T Consensus 402 ak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtDy~WyVdviL-qLiriag-------------d~vsdeVW~Rvv 466 (938)
T KOG1077|consen 402 AKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATDYSWYVDVIL-QLIRIAG-------------DYVSDEVWYRVV 466 (938)
T ss_pred HHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCCcchhHHHHH-HHHHHhc-------------ccccHHHHHHhh
Confidence 33445555544444 566788888888888998876543 44 6665554 111145887764
Q ss_pred ----cCcchHHHHHHHHHHHhcc
Q 001622 856 ----QHAVLSFLFLEHLISALNQ 874 (1042)
Q Consensus 856 ----~~~~l~~~vL~~LL~~L~~ 874 (1042)
+++.+=+-.-+.+.+-|+.
T Consensus 467 QiVvNnedlq~yaak~~fe~Lq~ 489 (938)
T KOG1077|consen 467 QIVVNNEDLQGYAAKRLFEYLQK 489 (938)
T ss_pred eeEecchhhhHHHHHHHHHHHhh
Confidence 5555555555555555554
No 48
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=47.55 E-value=34 Score=35.61 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=47.5
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhc
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASH 69 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~ 69 (1042)
++...|+..++..|-.|+.+|.||+.. ..+.-|-......+ ..+.|++..||..-..++..+..+
T Consensus 29 ~l~~~L~D~~~~VR~~al~~Ls~Li~~--d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 29 NLYKCLRDEDPLVRKTALLVLSHLILE--DMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHc--CceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 466788899999999999999999974 22233333334444 345899999998888887777766
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.43 E-value=87 Score=38.94 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=109.1
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCCh--HH
Q 001622 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPS--EV 723 (1042)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~ 723 (1042)
.+|..=......-+|+++-||-..--.|..+... |... .|. +-|..+-.+++. .+..+-+. .-
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~--------~~~~----~wp-elLp~L~~~L~s--~d~n~~EgA~~A 151 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIAST--------GGLQ----HWP-ELLPQLCELLDS--PDYNTCEGAFGA 151 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecc--------cccc----cch-hHHHHHHHHhcC--CcccccchhHHH
Confidence 5566556666677899998887665544433211 1111 121 122223222221 11111111 22
Q ss_pred HHHHHHHHHccCChhHHH----HHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcH
Q 001622 724 FNRIVSSVCILLTKDELV----ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDK 799 (1042)
Q Consensus 724 ~~~i~~~i~~~L~~~el~----~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~ 799 (1042)
+++||...++.|..+=++ -++=..++=...+++.--.-|..-+|+++-.+...+--. +..-++.+|. |....++
T Consensus 152 L~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFa-lanD~~~ 229 (885)
T KOG2023|consen 152 LQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFA-LANDEDP 229 (885)
T ss_pred HHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHH-HccCCCH
Confidence 345666555655553332 233333344444544444556666888888887777444 7778888887 6688889
Q ss_pred HHHHHHHHHHHHHhhhccchh-------HHHHHhhhhcccccccccccccCCCChhhHHHHhccCcchHHHHH
Q 001622 800 HLRLETLGAISCLAENTNSKI-------VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFL 865 (1042)
Q Consensus 800 ~~r~~~l~aI~lLa~~h~~~V-------V~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~~l~~~vL 865 (1042)
.+|+.+=+|+..|..-++++. |. .+| ..+.|... +..+-.++-|.++|..| ....+|
T Consensus 230 eVRk~vC~alv~Llevr~dkl~phl~~Ive-yML------~~tqd~dE-~VALEACEFwla~aeqp-i~~~~L 293 (885)
T KOG2023|consen 230 EVRKNVCRALVFLLEVRPDKLVPHLDNIVE-YML------QRTQDVDE-NVALEACEFWLALAEQP-ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHHHHHhcHHhcccchHHHHH-HHH------HHccCcch-hHHHHHHHHHHHHhcCc-CcHHHH
Confidence 999999999999998877765 44 555 12333331 12222234799999887 444443
No 50
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=46.26 E-value=6.9e+02 Score=31.27 Aligned_cols=335 Identities=16% Similarity=0.207 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhhhccccChHHHHHHHHHHhh-hhcCCCChhhHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHhcccC
Q 001622 256 WDDMIINFLAESLDVVQETDWLISLGNAFTEQ-YVLYTPDDDHSALLHRCLGILLQKV--ADRNYVCDKIDWMYKQANIA 332 (1042)
Q Consensus 256 We~~Ll~fL~~sL~~i~d~~W~~~L~~el~~q-~~~y~~~~~eK~fL~k~lG~~L~~~--~~~~~V~~~L~~ll~~~~~~ 332 (1042)
+..|=....+..+..+..-.+-+++-+-+.+- +.-++.++.+-+..++|+|+++-.- ..+-+.-.-+.++++..++.
T Consensus 537 ~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k 616 (975)
T COG5181 537 YRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSK 616 (975)
T ss_pred hhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCC
Confidence 45555555555444443333333333333222 2345566777788889999887643 44445555567788888888
Q ss_pred CCcchhhHHHHHHHHhhh----CHHHHHHHHHHHHhhhccccchhhhhhccCccccchh-HhHHHHHHHHHHHHH---hc
Q 001622 333 IPTNRLGLAKAMGLVAAS----HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEES-DDIHAALALMYGYAA---KY 404 (1042)
Q Consensus 333 ~~~ereG~A~~~G~~A~~----Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~-~~~ks~l~l~YG~va---~~ 404 (1042)
.+.-|+--|..+|..+.- |=...|++|-.+.-. .+...+ .|+ .-+-.++--.|.-+- .+
T Consensus 617 ~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE-----------~lge~y--pEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 617 PPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYE-----------NLGEDY--PEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHH-----------hcCccc--HHHHHHHHHHHHHHhhhhcccccC
Confidence 899998888888865532 223334444333211 111111 111 122223333343332 33
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCccc
Q 001622 405 APSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFA 484 (1042)
Q Consensus 405 ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~ 484 (1042)
-|...|++++- +|+. .|.+-+..+- |..++.. +.. +.. +-.-.|-+.++..++ |+|+
T Consensus 684 pPi~~ilP~lt-----PILr----nkh~Kv~~nt---i~lvg~I-~~~---~pe--yi~~rEWMRIcfeLv-----d~Lk 740 (975)
T COG5181 684 PPISGILPSLT-----PILR----NKHQKVVANT---IALVGTI-CMN---SPE--YIGVREWMRICFELV-----DSLK 740 (975)
T ss_pred Cchhhcccccc-----Hhhh----hhhHHHhhhH---HHHHHHH-Hhc---Ccc--cCCHHHHHHHHHHHH-----HHHH
Confidence 46666666543 2332 3433222222 2222221 111 111 222334444444443 2232
Q ss_pred CchhhHHHHHHHHHHHhhhhhc-cCC---------CCChhHHHHHHHHhh----hc-------cc-cCCC------CC-C
Q 001622 485 DSSIELLHTQALALSACTTLVT-VEP---------KLTIETRNHVMKATL----GF-------FA-LPND------PI-D 535 (1042)
Q Consensus 485 s~~~~l~~vr~~a~~ait~L~~-L~P---------~L~~e~~~~ll~~c~----sv-------~~-lP~~------~~-~ 535 (1042)
|-+=+ +|.-|-.+.-..++ +.| -|..++|..= .|. ++ |+ ||.. +. .
T Consensus 741 s~nKe---iRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~R--vctsvaI~iVae~cgpfsVlP~lm~dY~TPe~n 815 (975)
T COG5181 741 SWNKE---IRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQR--VCTSVAISIVAEYCGPFSVLPTLMSDYETPEAN 815 (975)
T ss_pred HhhHH---HHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhh--hhhhhhhhhhHhhcCchhhHHHHHhcccCchhH
Confidence 22111 22222222222221 111 1122222221 122 11 11 2211 11 1
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 001622 536 VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGS 615 (1042)
Q Consensus 536 ~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~ 615 (1042)
.++-..+++.-||+-+=.. +.+....|...|+-=+.-...--|+-|++.|-++-. +|+..
T Consensus 816 VQnGvLkam~fmFeyig~~-------s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~L----nc~gt--------- 875 (975)
T COG5181 816 VQNGVLKAMCFMFEYIGQA-------SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVL----NCPGT--------- 875 (975)
T ss_pred HHHhHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhc----CCCCc---------
Confidence 2244567777777765433 367888888888888877777789999998866544 11110
Q ss_pred cccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001622 616 CTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
.+ -.-+=||+-++-|-.-||.|.+.+.-.||+..+-
T Consensus 876 ------g~--------------------eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~ 911 (975)
T COG5181 876 ------GD--------------------EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFA 911 (975)
T ss_pred ------cc--------------------HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHH
Confidence 11 1246688999999999999999999999998764
No 51
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=45.50 E-value=3e+02 Score=34.36 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhh
Q 001622 295 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRL 374 (1042)
Q Consensus 295 ~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~ 374 (1042)
...+..++-++ ..+....-|. .+..++..-+ -.+.+.......++...+.--..+++.+.++.+.. ..
T Consensus 378 ~~~r~~~lDal----~~aGT~~av~-~i~~~I~~~~-~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~---~~--- 445 (618)
T PF01347_consen 378 EQARKIFLDAL----PQAGTNPAVK-FIKDLIKSKK-LTDDEAAQLLASLPFHVRRPTEELLKELFELAKSP---KV--- 445 (618)
T ss_dssp HHHHHHHHHHH----HHH-SHHHHH-HHHHHHHTT--S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-H---HH---
T ss_pred HHHHHHHHHHH----HHcCCHHHHH-HHHHHHHcCC-CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc---cc---
Confidence 33444444433 3444444454 4555555322 22334344444555555556667777777777641 10
Q ss_pred hhhccCccccchhHhHHHHHHHHHHHHHhcCCchh--------HHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHH
Q 001622 375 LSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTV--------IEARIDALVGTNMLSRLL---HVRHHTAKQAVITAID 443 (1042)
Q Consensus 375 ~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~--------ll~rve~~I~~~i~~~~~---~~kd~~lK~s~l~si~ 443 (1042)
.....++.+.+++||.++.++-... -...+-..+++++..++. ..+|..-++.+|+|+.
T Consensus 446 ----------~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLg 515 (618)
T PF01347_consen 446 ----------KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALG 515 (618)
T ss_dssp ----------HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhh
Confidence 1123688999999999976543331 001111223334444443 3456678888888876
Q ss_pred HHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhc
Q 001622 444 LLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 506 (1042)
Q Consensus 444 ~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~ 506 (1042)
-+|. + +.+..++.+++.+. .. | ..+|..|+.|+..+..
T Consensus 516 N~g~---~--------------~~i~~l~~~i~~~~--~~--~----~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 516 NLGH---P--------------ESIPVLLPYIEGKE--EV--P----HFIRVAAIQALRRLAK 553 (618)
T ss_dssp HHT----G--------------GGHHHHHTTSTTSS---S-------HHHHHHHHHTTTTGGG
T ss_pred ccCC---c--------------hhhHHHHhHhhhcc--cc--c----hHHHHHHHHHHHHHhh
Confidence 5542 1 23445666666552 11 1 1278888888765543
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=45.33 E-value=9.5e+02 Score=32.57 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=85.0
Q ss_pred HhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCCh---HHHHHHHH
Q 001622 653 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPS---EVFNRIVS 729 (1042)
Q Consensus 653 ~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~i~~ 729 (1042)
+..-+|+|+.+-||+.=+|.|.-|...--.. + +.| .. |+.+ +..+.+ .|. ..|++-+-
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-k----sND----~i---LshL---iTfLND----kDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKE-K----SND----VI---LSHL---ITFLND----KDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhc-c----ccc----ch---HHHH---HHHhcC----ccHHHHHHHHhhcc
Confidence 4567899999999999999977665443311 1 111 11 1111 111111 122 33443333
Q ss_pred HHHccCChhHHHHHHHH-HHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcH--HHHHHHH
Q 001622 730 SVCILLTKDELVATLHS-CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDK--HLRLETL 806 (1042)
Q Consensus 730 ~i~~~L~~~el~~~i~~-ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~--~~r~~~l 806 (1042)
-++-++...-+-+.+.. +..||.|.+.....-|-.-+..++|..--+= .. |-+|++..+- -.+.| =+|++++
T Consensus 643 gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K-~~-v~~i~~~v~P---lL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 643 GVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK-PA-VKDILQDVLP---LLCHPNLWIRRAVL 717 (1431)
T ss_pred ceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch-HH-HHHHHHhhhh---heeCchHHHHHHHH
Confidence 33444444433344444 5689999999998888888999998754332 23 7777776654 44555 3899999
Q ss_pred HHHHHHhhhc
Q 001622 807 GAISCLAENT 816 (1042)
Q Consensus 807 ~aI~lLa~~h 816 (1042)
..|..-+++-
T Consensus 718 ~iI~~~~~~l 727 (1431)
T KOG1240|consen 718 GIIAAIARQL 727 (1431)
T ss_pred HHHHHHHhhh
Confidence 9998888764
No 53
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=45.25 E-value=2.2e+02 Score=28.75 Aligned_cols=92 Identities=10% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHh--hHHHHHHHHhhhcCcH
Q 001622 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDK 799 (1042)
Q Consensus 722 ~~~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~--eIv~~i~~~l~~i~~~ 799 (1042)
+..-+||..|... ...=.+.+..+...|...+.+...-|-.+|..+++..|..+..+ |+ +.++.+..-+..-..+
T Consensus 19 ~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~ 95 (144)
T cd03568 19 GLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHP 95 (144)
T ss_pred HHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCH
Confidence 3334566555433 23335566667777888888888999999999999999988433 54 2233322222222445
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001622 800 HLRLETLGAISCLAENT 816 (1042)
Q Consensus 800 ~~r~~~l~aI~lLa~~h 816 (1042)
.+++.++..|...+...
T Consensus 96 ~Vk~kil~li~~W~~~f 112 (144)
T cd03568 96 TVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666665555555443
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.94 E-value=1.6e+02 Score=36.05 Aligned_cols=80 Identities=11% Similarity=0.248 Sum_probs=45.1
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCC--chhhhhhhhcchhHHHHHhhcCCCCCChHH
Q 001622 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGI--DLELSYGALSSLEDVIAILRSDASIDPSEV 723 (1042)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 723 (1042)
++=++..+| -|.|+.. -+.+.+|++.+|...-......+ ..+ .+++. +.+.+++.+. ..+..++
T Consensus 408 iI~plcdlL--~~~D~~i--i~v~Ld~l~nil~~~e~~~~~~~--n~~~~~IEe~-ggldkiE~LQ-------~hen~~I 473 (514)
T KOG0166|consen 408 IIKPLCDLL--TCPDVKI--ILVALDGLENILKVGEAEKNRGT--NPLAIMIEEA-GGLDKIENLQ-------SHENEEI 473 (514)
T ss_pred Cchhhhhcc--cCCChHH--HHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHc-cChhHHHHhh-------ccccHHH
Confidence 455555555 6767655 88999999999977654322111 111 11111 2233333221 1233477
Q ss_pred HHHHHHHHHccCChhH
Q 001622 724 FNRIVSSVCILLTKDE 739 (1042)
Q Consensus 724 ~~~i~~~i~~~L~~~e 739 (1042)
|....++|.+|++.++
T Consensus 474 y~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 474 YKKAYKIIDTYFSEED 489 (514)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 7777888899998764
No 55
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.38 E-value=7.6e+02 Score=30.93 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=64.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~ 805 (1042)
.||.-=-.+.++.|-.-..+.+++.|.+.++.--+.|...+-++=+.-| .+|| +..+...| .+.+.+.|...
T Consensus 714 ~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG----Pqdv---L~~LlnnL-kvqeRq~Rvct 785 (975)
T COG5181 714 TICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG----PQDV---LDILLNNL-KVQERQQRVCT 785 (975)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC----HHHH---HHHHHhcc-hHHHHHhhhhh
Confidence 3444345688999999999999999999988888888888877766655 3433 33333322 23456778888
Q ss_pred HHHHHHHhhhccchhHHHHHh
Q 001622 806 LGAISCLAENTNSKIVFNEVL 826 (1042)
Q Consensus 806 l~aI~lLa~~h~~~VV~~~LL 826 (1042)
--||..-|+..-+=-|..+|+
T Consensus 786 svaI~iVae~cgpfsVlP~lm 806 (975)
T COG5181 786 SVAISIVAEYCGPFSVLPTLM 806 (975)
T ss_pred hhhhhhhHhhcCchhhHHHHH
Confidence 888888888765544444666
No 56
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.52 E-value=1.3e+02 Score=31.67 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHHHhh-hccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchh
Q 001622 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTK-RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1042)
Q Consensus 742 ~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~-rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~V 820 (1042)
.++-.++|||....+.-.-.|......+++. .|.++-.- +|.++-.|...|.. .++.+...+|+++..|+..+ ++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~--~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSS--DM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhh--hh
Confidence 4566788999998888888888888888888 66666566 88999999887765 45779999999999998874 45
Q ss_pred HHHHHh
Q 001622 821 VFNEVL 826 (1042)
Q Consensus 821 V~~~LL 826 (1042)
|-.+|.
T Consensus 114 vG~aLv 119 (183)
T PF10274_consen 114 VGEALV 119 (183)
T ss_pred hhHHHH
Confidence 542443
No 57
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.29 E-value=7.5e+02 Score=31.43 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcch-hhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhh-
Q 001622 299 ALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNR-LGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLS- 376 (1042)
Q Consensus 299 ~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~er-eG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~- 376 (1042)
-|+++-+-++..+....+++.+=+..++.+-+ .+..++ |-+-..++-+|. .++ -.|.|+ ..+=++-+
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~-~~~~~iQ~~~L~~lptv~e-----~iD--~~~vk~---~ilP~l~~l 436 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLE-DSDVQIQELALQILPTVAE-----SID--VPFVKQ---AILPRLKNL 436 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhc-CcchhhHHHHHHhhhHHHH-----hcc--HHHHHH---HHHHHhhcc
Confidence 67778888888888776555533444444333 222333 333344333332 222 122332 12222223
Q ss_pred hccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 001622 377 FFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLG 446 (1042)
Q Consensus 377 ~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~ 446 (1042)
+|+... -.+|.+++.|.|.++.....-.++. .+..|+.++ ...|+.+++.+++...-+.
T Consensus 437 ~~~tt~-----~~vkvn~L~c~~~l~q~lD~~~v~d-----~~lpi~~~~-~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 437 AFKTTN-----LYVKVNVLPCLAGLIQRLDKAAVLD-----ELLPILKCI-KTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred hhcccc-----hHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence 332222 3688899999999986665554432 222355543 4689999998888766443
No 58
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.68 E-value=49 Score=32.60 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=45.2
Q ss_pred ChhhhhhcccccchhHHHHHHHhhhcCCCchhh---ccchHHHHHHHHHhhh--------hccHHHHHHHHHHHHHHh
Q 001622 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAW---HSKRPLLLEAVKSLLD--------EQNLAVQKAISELIVVMA 67 (1042)
Q Consensus 1 ~fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~---~~k~~~i~~~vk~~l~--------d~~~kVr~al~~~I~ama 67 (1042)
+||+.+|+.++-.++.++|.||+|++....+.. --+...+++..+.--+ +++-+||.+-=+++.++-
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 489999999998999999999999998654432 1233455555444322 345677776666665543
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=8e+02 Score=31.33 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCc
Q 001622 562 RADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPS 641 (1042)
Q Consensus 562 ~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~ 641 (1042)
||+---.+-..+-..|.|.+.+-|+||+....+++.+|-+. ++.. ||
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-------------------lr~~-------------Fp- 184 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-------------------LRPC-------------FP- 184 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-------------------Hhhh-------------HH-
Q ss_pred hhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCCh
Q 001622 642 REALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPS 721 (1042)
Q Consensus 642 ~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 721 (1042)
.|.=.--|||+.|+..|+..|+-| ..++++....-. +..++-+.. ++.+
T Consensus 185 -----------rL~EkLeDpDp~V~SAAV~VICEL-----ArKnPknyL~LA--P~ffklltt-------------SsNN 233 (877)
T KOG1059|consen 185 -----------RLVEKLEDPDPSVVSAAVSVICEL-----ARKNPQNYLQLA--PLFYKLLVT-------------SSNN 233 (877)
T ss_pred -----------HHHHhccCCCchHHHHHHHHHHHH-----HhhCCccccccc--HHHHHHHhc-------------cCCC
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchh--cHhhHHHHHHHHhhhcCcH
Q 001622 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET--DVSRTTQSLLSAAVHITDK 799 (1042)
Q Consensus 722 ~~~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~--dV~eIv~~i~~~l~~i~~~ 799 (1042)
=++=++.|.|+..-+-+- -+-.-+++.|++. -.++.|-+.+-.++=.--...+... |=..-++-..++|....+.
T Consensus 234 WmLIKiiKLF~aLtplEP--RLgKKLieplt~l-i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fied 310 (877)
T KOG1059|consen 234 WVLIKLLKLFAALTPLEP--RLGKKLIEPITEL-MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIED 310 (877)
T ss_pred eehHHHHHHHhhccccCc--hhhhhhhhHHHHH-HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhc
Q ss_pred ---HHHHHHHHHHHHHhhhccchhHHHHHhhhhcccccccccccccCCCChhhHHHHhc-cCcchHHHHHHHHHHHhccC
Q 001622 800 ---HLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFS-QHAVLSFLFLEHLISALNQT 875 (1042)
Q Consensus 800 ---~~r~~~l~aI~lLa~~h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~-~~~~l~~~vL~~LL~~L~~~ 875 (1042)
+.|.--+-|++-++..||..|-..-=+ .-|+|. .|++.-.+-|+.|+...++.
T Consensus 311 sDqNLKYlgLlam~KI~ktHp~~Vqa~kdl-----------------------IlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 311 SDQNLKYLGLLAMSKILKTHPKAVQAHKDL-----------------------ILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred CCccHHHHHHHHHHHHhhhCHHHHHHhHHH-----------------------HHHHhccCCchhHHHHHHHHHHHhhhh
Q ss_pred CCCC
Q 001622 876 PFVK 879 (1042)
Q Consensus 876 p~~~ 879 (1042)
...+
T Consensus 368 Nl~e 371 (877)
T KOG1059|consen 368 NLME 371 (877)
T ss_pred hHHH
No 60
>PRK09687 putative lyase; Provisional
Probab=39.06 E-value=6.1e+02 Score=28.53 Aligned_cols=164 Identities=11% Similarity=0.055 Sum_probs=87.4
Q ss_pred CccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHHHHHHHHHHHccCC
Q 001622 657 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLT 736 (1042)
Q Consensus 657 rC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~L~ 736 (1042)
.-.|+++.||..|+.++.++- ..+.. +..+++..+. .-...+++.+=...+..+++. .
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~--------~~~~~------~~~~a~~~l~-------~~~~D~~~~VR~~a~~aLg~~-~ 156 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRC--------KKNPL------YSPKIVEQSQ-------ITAFDKSTNVRFAVAFALSVI-N 156 (280)
T ss_pred HhcCCCHHHHHHHHHHHhccc--------ccccc------cchHHHHHHH-------HHhhCCCHHHHHHHHHHHhcc-C
Confidence 358999999999999988752 00110 0001111111 111223445545566666543 3
Q ss_pred hhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhc
Q 001622 737 KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 737 ~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h 816 (1042)
..+ -+-.++..|.|++...-..|+..|..+ .. . -++++..+...| .-.++.+|..+..+ |++-.
T Consensus 157 ~~~---ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~-------~-~~~~~~~L~~~L-~D~~~~VR~~A~~a---Lg~~~ 220 (280)
T PRK09687 157 DEA---AIPLLINLLKDPNGDVRNWAAFALNSN-KY-------D-NPDIREAFVAML-QDKNEEIRIEAIIG---LALRK 220 (280)
T ss_pred CHH---HHHHHHHHhcCCCHHHHHHHHHHHhcC-CC-------C-CHHHHHHHHHHh-cCCChHHHHHHHHH---HHccC
Confidence 333 445566666788777667777777555 11 1 223444555544 45566788765555 55555
Q ss_pred cchhHHHHHhhhhcccccccccccccCCCChhhHHHHhccCcchHHHHHHHHHHHhc
Q 001622 817 NSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALN 873 (1042)
Q Consensus 817 ~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~~l~~~vL~~LL~~L~ 873 (1042)
.+.+|. .|++.. ..+-+..+.-.|+|.-.. ...+..|...++
T Consensus 221 ~~~av~-~Li~~L------------~~~~~~~~a~~ALg~ig~--~~a~p~L~~l~~ 262 (280)
T PRK09687 221 DKRVLS-VLIKEL------------KKGTVGDLIIEAAGELGD--KTLLPVLDTLLY 262 (280)
T ss_pred ChhHHH-HHHHHH------------cCCchHHHHHHHHHhcCC--HhHHHHHHHHHh
Confidence 678886 777553 222233345556654432 244455554444
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.57 E-value=5.7e+02 Score=32.88 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhc--CcHHHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI--TDKHLRL 803 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i--~~~~~r~ 803 (1042)
+++.+|-+. .++|..++..+.-.+-+.-..|.+++..++..||.++... +-.--.+|-.-|.-+ ..+-+|.
T Consensus 112 ~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~-ll~~P~gIS~lmdlL~DsrE~IRN 184 (970)
T KOG0946|consen 112 WIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA-LLVSPMGISKLMDLLRDSREPIRN 184 (970)
T ss_pred HHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH-HHHCchhHHHHHHHHhhhhhhhch
Confidence 455555444 3555556666666666667889999999999999998433 322222222222222 2234777
Q ss_pred HHHHHHHHHhhhc
Q 001622 804 ETLGAISCLAENT 816 (1042)
Q Consensus 804 ~~l~aI~lLa~~h 816 (1042)
.++--++.|++-.
T Consensus 185 e~iLlL~eL~k~n 197 (970)
T KOG0946|consen 185 EAILLLSELVKDN 197 (970)
T ss_pred hHHHHHHHHHccC
Confidence 7777777777653
No 62
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.47 E-value=6.7e+02 Score=28.84 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=124.3
Q ss_pred HHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhc-------Cc---------HHHHHHHHH
Q 001622 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-------TD---------KHLRLETLG 807 (1042)
Q Consensus 744 i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i-------~~---------~~~r~~~l~ 807 (1042)
+..+..+|......-..++-.+|+.++...|+.+..+ |-+-.+.=...++.+ .+ +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~-v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALARE-VLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHH-HHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 3445566666666666788888888888777666222 433222222211111 11 278999999
Q ss_pred HHHHHhhhccchhHHHHHhhhhcccccccccccccCCCChhhHHHHhccCc-chHHHHHHHHHHHhccCCCCCCCCCCCC
Q 001622 808 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHA-VLSFLFLEHLISALNQTPFVKGDMEKGD 886 (1042)
Q Consensus 808 aI~lLa~~h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~-~l~~~vL~~LL~~L~~~p~~~~~~~~~~ 886 (1042)
=+..+-++..+.+.. .+|.+ ..+ +...|+-+..|+ .+...||+.|-+.+-..+...-.
T Consensus 137 F~Lsfl~~~~~~~~~-~lL~~--------------~~~-~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~----- 195 (330)
T PF11707_consen 137 FWLSFLSSGDPELKR-DLLSQ--------------KKL-MSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS----- 195 (330)
T ss_pred HHHHHHccCCHHHHH-HHHHc--------------Cch-HHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-----
Confidence 999999988888887 88833 334 667999999987 67777777777644433322111
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCC-CChHHH----HHHHHH
Q 001622 887 YSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQ-HEPLRA----ILTSFQ 961 (1042)
Q Consensus 887 ~~~~~t~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~~~l~~~~~-~~P~~~----aleAlk 961 (1042)
+ ...+..-.++..|..+..-.++.....+.+..-++|+.+.+.- .+|+..+.. .=|... ..+.-.
T Consensus 196 -----~---K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p--~~Gv~f~d~~~~~~~~~~~~~~~~~~ 265 (330)
T PF11707_consen 196 -----T---KCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP--KHGVCFPDNGWYPRESDSGVPVTINN 265 (330)
T ss_pred -----h---hhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC--CcccccCCCCcCcCcccccccccccC
Confidence 0 0112223455556664444433223455555555666554422 233322210 000000 000000
Q ss_pred HHHHhhCChHHHHHHHhcCCCCchhhhHHhHHHHHHHHHhhCChhHHHHHHHHHHhhc
Q 001622 962 AFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSIN 1019 (1042)
Q Consensus 962 ~lL~~~g~~~~~~~l~~~~~W~~~~~~~~GV~lLAram~~~~~~~i~~il~~L~~~l~ 1019 (1042)
. --..+.--....|....-|++ ..+. .|+-.+.+.+|..+.+-+..+...+.
T Consensus 266 ~-~~~~~Nk~L~~ll~~lkp~e~-~~q~----~Lvl~Il~~~PeLva~Y~~~~~~~~~ 317 (330)
T PF11707_consen 266 K-SFKINNKLLLNLLKKLKPWED-DRQQ----ELVLKILKACPELVAPYFNNLPYSLE 317 (330)
T ss_pred C-CCCcccHHHHHHHHHCCCCcc-HHHH----HHHHHHHHHChHHHHHHHHhhhhhCC
Confidence 0 001222333455555566652 1222 23444556667777877777765554
No 63
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.55 E-value=3.7e+02 Score=26.76 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHh--hHHHHHHHHhhhcCcH
Q 001622 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDK 799 (1042)
Q Consensus 722 ~~~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~--eIv~~i~~~l~~i~~~ 799 (1042)
..+-.||..|... +..-.+.+..+...|...++....-|-.+|..+++..|..+..+ |+ +.++.+..-+..-...
T Consensus 24 ~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e-v~~~~fl~~l~~l~~~~~~~ 100 (140)
T PF00790_consen 24 SLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE-VASKEFLDELVKLIKSKKTD 100 (140)
T ss_dssp HHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH-HTSHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HhHHHHHHHHHHHHccCCCC
Confidence 4444566666555 33345566667777888888888889999999999999988444 63 3455555433322222
Q ss_pred -H--HHHHHHHHHHHHhhhc
Q 001622 800 -H--LRLETLGAISCLAENT 816 (1042)
Q Consensus 800 -~--~r~~~l~aI~lLa~~h 816 (1042)
. +|+.++..|...+..+
T Consensus 101 ~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 101 PETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHSHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 2 7777777777776654
No 64
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=36.39 E-value=9.4e+02 Score=29.96 Aligned_cols=165 Identities=14% Similarity=0.192 Sum_probs=83.3
Q ss_pred hhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHHHHH
Q 001622 647 LGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR 726 (1042)
Q Consensus 647 lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 726 (1042)
.=.|.+-++|++.-.=|+.+..|++|+.-|.. |.+..--..+++.+ ..+..+.++-..+
T Consensus 38 ~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE-------------Ded~~iR~~aik~l--------p~~ck~~~~~v~k 96 (556)
T PF05918_consen 38 EKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE-------------DEDVQIRKQAIKGL--------PQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT--------------SSHHHHHHHHHHG--------GGG--T--T-HHH
T ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-------------cccHHHHHHHHHhH--------HHHHHhHHHHHhH
Confidence 45667778899999999999999999876641 22211111222222 1122233444567
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhh--hcCcHHHHHH
Q 001622 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAV--HITDKHLRLE 804 (1042)
Q Consensus 727 i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~--~i~~~~~r~~ 804 (1042)
++.++++.|..++-+.+ ...-..|..+++ .|....+.+++.|+. ...++.+|..
T Consensus 97 vaDvL~QlL~tdd~~E~----------------~~v~~sL~~ll~--------~d~k~tL~~lf~~i~~~~~~de~~Re~ 152 (556)
T PF05918_consen 97 VADVLVQLLQTDDPVEL----------------DAVKNSLMSLLK--------QDPKGTLTGLFSQIESSKSGDEQVRER 152 (556)
T ss_dssp HHHHHHHHTT---HHHH----------------HHHHHHHHHHHH--------H-HHHHHHHHHHHHH---HS-HHHHHH
T ss_pred HHHHHHHHHhcccHHHH----------------HHHHHHHHHHHh--------cCcHHHHHHHHHHHHhcccCchHHHHH
Confidence 88889998887774432 222333444443 235556777777776 2456678887
Q ss_pred HHHHHHHHhhhccchh------HHHHHhhhhcccccccccccccCCCChhhHHHHhccCcchHHHHHHHHHHHhccCCCC
Q 001622 805 TLGAISCLAENTNSKI------VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFV 878 (1042)
Q Consensus 805 ~l~aI~lLa~~h~~~V------V~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~~l~~~vL~~LL~~L~~~p~~ 878 (1042)
+++-|..=...-..++ +...+. +.+=++| .| ++..=++.+++.|+..+.|
T Consensus 153 ~lkFl~~kl~~l~~~~~~p~~E~e~~i~---------------------~~ikkvL-~D--VTaeEF~l~m~lL~~lk~~ 208 (556)
T PF05918_consen 153 ALKFLREKLKPLKPELLTPQKEMEEFIV---------------------DEIKKVL-QD--VTAEEFELFMSLLKSLKIY 208 (556)
T ss_dssp HHHHHHHHGGGS-TTTS---HHHHHHHH---------------------HHHHHHC-TT----HHHHHHHHHHHHTSGG-
T ss_pred HHHHHHHHHhhCcHHHhhchHHHHHHHH---------------------HHHHHHH-Hh--ccHHHHHHHHHHHHhCccc
Confidence 7776642222111111 110111 1233444 22 5566778888999988887
Q ss_pred CC
Q 001622 879 KG 880 (1042)
Q Consensus 879 ~~ 880 (1042)
.+
T Consensus 209 ~~ 210 (556)
T PF05918_consen 209 GG 210 (556)
T ss_dssp --
T ss_pred cc
Confidence 54
No 65
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.33 E-value=52 Score=34.69 Aligned_cols=116 Identities=22% Similarity=0.157 Sum_probs=70.7
Q ss_pred hcccccchhHHHHHHHhhhcCC-CchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCCcCccceeeee
Q 001622 7 CRLKEEHLSVGALYVLKHLLPR-SSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLV 85 (1042)
Q Consensus 7 l~~~~E~~Rvg~L~vlrhlins-~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i~fiv 85 (1042)
|+..++--|.=|..=++.++.+ ..+.+-.-.|.++..+|..|+..+..|..+.+++++.|+..+-. -|+.++-|.-
T Consensus 47 L~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~---vG~aLvPyyr 123 (183)
T PF10274_consen 47 LRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM---VGEALVPYYR 123 (183)
T ss_pred hhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Confidence 4444554444444434444443 56667788899999999999999999999999999999655322 2566888854
Q ss_pred ecccccCccccccccccccCCCCCchHHHHHHHHHHHHHh
Q 001622 86 RHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLT 125 (1042)
Q Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ 125 (1042)
+-.-.-+--.....+.+...+-....++++.-.+||+.+-
T Consensus 124 qLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE 163 (183)
T PF10274_consen 124 QLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLE 163 (183)
T ss_pred HHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHH
Confidence 3222111000111111222222445678888888888764
No 66
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=35.16 E-value=4e+02 Score=26.83 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=57.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHh--hHHHHHHHHhhhcCcHHHHH
Q 001622 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRL 803 (1042)
Q Consensus 726 ~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~--eIv~~i~~~l~~i~~~~~r~ 803 (1042)
++|..|... +..=.+-+..+...|..++++...-|-.+|..+++..|..+..+ |+ +.++.+..-+.....+.+|+
T Consensus 27 eicD~In~~--~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-vas~~fl~~l~~l~~~~~~~~Vk~ 103 (142)
T cd03569 27 EICDMIRSK--DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE-VASREFMDELKDLIKTTKNEEVRQ 103 (142)
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHHcccCCHHHHH
Confidence 455555322 22334566667777788888888999999999999999988433 54 33444433333345556777
Q ss_pred HHHHHHHHHhhhc
Q 001622 804 ETLGAISCLAENT 816 (1042)
Q Consensus 804 ~~l~aI~lLa~~h 816 (1042)
.++..|...+...
T Consensus 104 kil~li~~W~~~f 116 (142)
T cd03569 104 KILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766554
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=34.96 E-value=62 Score=30.02 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=46.1
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhcc-chHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS-KRPLLLEAVKSLLDEQNLAVQKAISELIVVMA 67 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~-k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama 67 (1042)
|..-|.+++.+.|..++..|+.+.....+..+. ...-++..+-..+++.+.++|+..+.++..++
T Consensus 54 l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 54 LVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 445567788999999999999998754322221 12234555556677888999999998887765
No 68
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=34.22 E-value=2.2e+02 Score=35.32 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=85.9
Q ss_pred hhccccChHHHHHHHHHHhhhhcCC---CChhhHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHhcccCCCcchh
Q 001622 268 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 338 (1042)
Q Consensus 268 L~~i~d~~W~~~L~~el~~q~~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 338 (1042)
-..++|.+|..+=.+.++=-+.+-. +...||.|+...+--.|+-| +||++|.+.|.-.+. .| -|
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG--QY----pR- 559 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG--QY----PR- 559 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec--cc----hH-
Confidence 3467888999887666666666554 34679999988776666644 777777766655444 11 11
Q ss_pred hHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHH---
Q 001622 339 GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARID--- 415 (1042)
Q Consensus 339 G~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve--- 415 (1042)
|=.+--+-|.+|.+||=+|... +-|.++-..--.|=.++..||-+-+.++--
T Consensus 560 -----FLkahw~FLkTVv~KLFEFMhE--------------------~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesE 614 (1053)
T COG5101 560 -----FLKAHWSFLKTVVKKLFEFMHE--------------------DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESE 614 (1053)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhh--------------------hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCC
Confidence 2223445677787777776642 112333333334556777888776655442
Q ss_pred ---HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHh
Q 001622 416 ---ALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVIN 451 (1042)
Q Consensus 416 ---~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~ 451 (1042)
+.|++|+-+ ...--.+.-|-.|-+|..++-.++..
T Consensus 615 pFI~~Iirnl~k-tT~dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 615 PFIVYIIRNLPK-TTGDLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred cHHHHHHHhhhh-hcccCChHHHhHHHHHHhHHHhccch
Confidence 123333222 01112334566677777666555433
No 69
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=1.2e+03 Score=30.49 Aligned_cols=277 Identities=11% Similarity=0.117 Sum_probs=148.7
Q ss_pred HHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhc-cCCCCChhHHHHHHHHhh-hcc-ccCCCCCCchHHHH
Q 001622 465 DQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VEPKLTIETRNHVMKATL-GFF-ALPNDPIDVVNPLI 541 (1042)
Q Consensus 465 ~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~-L~P~L~~e~~~~ll~~c~-sv~-~lP~~~~~~~~~l~ 541 (1042)
+.++..+-+++-+ ..-+++ +|-++|.+|-++.. ++|..-...-.+|++-|+ ..= .+-|.-+...+.++
T Consensus 587 d~~~a~~~e~l~~---~~~~~S------~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~ 657 (982)
T KOG2022|consen 587 DQFSAVCYEVLNK---SNAKDS------DRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLR 657 (982)
T ss_pred HHHHHHHHHHhcc---cccCch------HHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 4555555554432 222344 78889999888754 665555555555666666 321 11111122223343
Q ss_pred -----HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhh--hcccccccCCCC
Q 001622 542 -----DNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTL--CVIGYCALGCHG 614 (1042)
Q Consensus 542 -----~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~--~~~~~c~~~~~~ 614 (1042)
..+..++.++..+... ..-..-.....||=+++-..-|.+++..+-+++..+.+. -+++.|.--.++
T Consensus 658 ~~~~l~~iS~LftSL~~~~~~------~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~ 731 (982)
T KOG2022|consen 658 IAFQLNTISALFTSLINKKDI------IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKG 731 (982)
T ss_pred HHHHHHHHHHHHhccCCCCcc------ccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhc
Confidence 3344555555443322 112233457789999999999999999999998877765 455566533222
Q ss_pred CcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCc
Q 001622 615 SCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGID 694 (1042)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~ 694 (1042)
+.++ .|| |..| --+-+=..++++.++|.=+-.++-..++-+-+. ..+..+...
T Consensus 732 v~~~--------------~~s-F~~p--~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~----------~~~~~~lv~ 784 (982)
T KOG2022|consen 732 VRSL--------------LTS-FPEP--MLPSLCPFIVRFLTSCLAVTLSLIAACLLAKST----------VEQCKPLVG 784 (982)
T ss_pred cccc--------------ccc-chhh--hHHHHHHHHHHhccchHHHHHHHHHHHHHhhhc----------cccccccHH
Confidence 2111 223 3222 122355566778888875544433322221110 000000000
Q ss_pred hhhhhhhhcchhHHHHHhhcCCCCCChHHHH-------HHHHHHHccCCh--hHHHHHHH-HHHHhccCCCcchHHHHHH
Q 001622 695 LELSYGALSSLEDVIAILRSDASIDPSEVFN-------RIVSSVCILLTK--DELVATLH-SCTTAICDRTKQSAEGAIQ 764 (1042)
Q Consensus 695 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-------~i~~~i~~~L~~--~el~~~i~-~ll~~L~d~~~~~~~~A~~ 764 (1042)
++.. ..++..+-...+....+++.++. ++.|.+-+.+-+ ...+++++ ..+.+|+.+++....+|++
T Consensus 785 -~~~~---~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 785 -QDMA---NAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred -HHHH---HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 1111 11222222233444455564442 333333333333 45688888 8999999999999999999
Q ss_pred HHHHHHhhhccccchhcHhhHHHH
Q 001622 765 AVVEFVTKRGNELSETDVSRTTQS 788 (1042)
Q Consensus 765 ~L~~~l~~rG~~l~e~dV~eIv~~ 788 (1042)
.+..+....++..-.. |.+.|..
T Consensus 861 F~t~~~~~~~s~~~~t-v~~~V~~ 883 (982)
T KOG2022|consen 861 FLTALATYATSHDLVT-VTSVVAE 883 (982)
T ss_pred HHHHHHhhcccchhHH-HHHHHHh
Confidence 9999988877744244 6555544
No 70
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=1.1e+03 Score=30.50 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=60.4
Q ss_pred HhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchhHHHHHhhhhcccccccccccccCCCChhhHHHHhccCcchH
Q 001622 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS 861 (1042)
Q Consensus 782 V~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~VV~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~al~~~~~l~ 861 (1042)
++|.+..++.++.+-+-..-|+.+.+++-.+++.+-.+|.. . .-=|+-...+.=..|+...
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~------------------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-Q------------------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-c------------------ccHHHHHHHhhccCCHHHH
Confidence 88889999999999999999999999999999999777765 2 2223333444446788889
Q ss_pred HHHHHHHHHHhccCC
Q 001622 862 FLFLEHLISALNQTP 876 (1042)
Q Consensus 862 ~~vL~~LL~~L~~~p 876 (1042)
.-+|+.++......-
T Consensus 81 k~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD 95 (970)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998877654
No 71
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.35 E-value=87 Score=31.01 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=51.6
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhh
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLD---EQNLAVQKAISELIVVMAS 68 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~---d~~~kVr~al~~~I~ama~ 68 (1042)
|..+|..+|.....-||.+|-.++..+++.+.. .+.++.+ +..++. ..+..||+-++++|...+.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998886542 4456666 444543 4688999999999988775
No 72
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.32 E-value=90 Score=31.46 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=51.4
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhh
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-DEQNLAVQKAISELIVVMAS 68 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l-~d~~~kVr~al~~~I~ama~ 68 (1042)
+..||..+|.+.-.-||.+|-.++..++..... .+.++-+ ++.++ ..+..+||+-++++|.+.+.
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~-l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE-LKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH-HHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998876543 4445444 44455 47789999999999998874
No 73
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.99 E-value=90 Score=31.57 Aligned_cols=65 Identities=17% Similarity=0.361 Sum_probs=52.1
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhh
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLAVQKAISELIVVMAS 68 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~d-~~~kVr~al~~~I~ama~ 68 (1042)
+..||.++|.+.-.-||.+|-.++..++..+.. .+.++ ..++.++.+ ...+||.-++++|.+.+.
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl-~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFT-QELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH-HHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999986542 44444 446666665 889999999999998773
No 74
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=31.79 E-value=39 Score=35.63 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=41.2
Q ss_pred chhHHHHHHHhhhcCCCchh-hccch----H--------HHHHHHHHhhhhccHHHHHHHHHHHHHHhhc
Q 001622 13 HLSVGALYVLKHLLPRSSEA-WHSKR----P--------LLLEAVKSLLDEQNLAVQKAISELIVVMASH 69 (1042)
Q Consensus 13 ~~Rvg~L~vlrhlins~~~~-~~~k~----~--------~i~~~vk~~l~d~~~kVr~al~~~I~ama~~ 69 (1042)
++|+++|..|..++.+.++. +..+- | .-...+..++.|++.|||-+-++++.+|-++
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 57999999999999873332 21111 1 1223455677999999999999999999765
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=31.72 E-value=77 Score=29.80 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=46.6
Q ss_pred hhHHHHHHHhhhcCCCchhhccchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhc
Q 001622 14 LSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASH 69 (1042)
Q Consensus 14 ~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~ 69 (1042)
.|-|.|.=|..+.-+....+....+.|+.-|-..+.|++.+||.+-++.+..++..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 36777877877766677778888888888888888999999999999998888754
No 76
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.63 E-value=4.7e+02 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHH-HHHHHHHHHHhhhc
Q 001622 740 LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLR-LETLGAISCLAENT 816 (1042)
Q Consensus 740 l~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r-~~~l~aI~lLa~~h 816 (1042)
+..++-.+.+||........++|+-|+...+-.+. .|.. ++++++...+......... +..+-++..|.+++
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSD----EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcH----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 45667778899996666688999999999997775 4522 3444444444444444322 55556666666665
No 77
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.83 E-value=1.7e+02 Score=30.85 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhh
Q 001622 565 QLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREA 644 (1042)
Q Consensus 565 ~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~ 644 (1042)
-.|..++++-.--.|+...-|..|+..+..+++. | +.+.+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-------G--------------LvnP~------------------- 44 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQ-------G--------------LVNPK------------------- 44 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-------C--------------CCChH-------------------
Confidence 4567777777778899999999999999888882 1 12122
Q ss_pred hhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001622 645 LCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1042)
Q Consensus 645 ~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll 677 (1042)
.++-.+|| +-+||++.||..|.+.+..+.
T Consensus 45 ~cvp~lIA----L~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 45 QCVPTLIA----LETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHhHhhh----hhCCCChHHHHHHHHHHHHHH
Confidence 37777777 488999999999999887775
No 78
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=30.17 E-value=2.1e+02 Score=27.46 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 001622 902 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILA 977 (1042)
Q Consensus 902 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~~~l~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~l~ 977 (1042)
.-|+.|+.+|... .++.+..+.||+..+|-.-+. . .+=+..+++++..|+.+....++...++
T Consensus 33 ~~~i~ai~~lI~~----~g~~i~~a~pQI~acL~saL~------~---~eL~~~al~~W~~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 33 KRALRSIGFLIKL----MGKHISSALPQIMACLQSALE------I---PELRSLALRCWHVLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhC------c---hhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3488999999883 568999999999998865542 1 1124689999999998888777665554
No 79
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=2e+02 Score=35.27 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=50.8
Q ss_pred cCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHH-hhhCHHHHHHHHHHHHhhhccccchhhhhhccCccccchhHhH
Q 001622 312 VADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLV-AASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDI 390 (1042)
Q Consensus 312 ~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~-A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ 390 (1042)
|+|.+.+-.-++.+.+ +| |+--|-|.|.++|++ |-.-....++.|+...++. .+-+
T Consensus 581 ~~D~~~lv~tvelLs~--sh-N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~--------------------~dfV 637 (926)
T COG5116 581 CDDRDLLVGTVELLSE--SH-NFHVRAGVAVALGIACAGTGDKVATDILEALMYDT--------------------NDFV 637 (926)
T ss_pred ecCcchhhHHHHHhhh--cc-chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCc--------------------HHHH
Confidence 3444444444454444 43 567889999999985 4444556677777766531 1247
Q ss_pred HHHHHHHHHHHHhcCCchhH
Q 001622 391 HAALALMYGYAAKYAPSTVI 410 (1042)
Q Consensus 391 ks~l~l~YG~va~~ap~~~l 410 (1042)
|-..|..-|-|..++.+++.
T Consensus 638 RQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 638 RQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred HHHHHHHHHHHHhhcCcccC
Confidence 77888999999999998854
No 80
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=29.76 E-value=55 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHH
Q 001622 38 PLLLEAVKSLLDEQNLAVQKAISELI 63 (1042)
Q Consensus 38 ~~i~~~vk~~l~d~~~kVr~al~~~I 63 (1042)
+.+...++.-+.|++..||.|.+++|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 47888888889999999999999875
No 81
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.67 E-value=4.8e+02 Score=25.83 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHh--hHHHHHHHHhhhcCcH
Q 001622 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDK 799 (1042)
Q Consensus 722 ~~~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~--eIv~~i~~~l~~i~~~ 799 (1042)
+..-.+|..|... +.-=.+.+-.+...|..+++....-|-.+|..+++..|..+..+ |+ +.++.+..-+..-...
T Consensus 19 ~~~l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~e-v~s~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 19 ELILEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLE-VASKEFLNELVKLIKPKYPL 95 (133)
T ss_pred HHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHhHHHHHHHHHHHcCCCCc
Confidence 3333455555444 22234556667777888888888999999999999999988433 53 2333333322222221
Q ss_pred -HHHHHHHHHHHHHhhh
Q 001622 800 -HLRLETLGAISCLAEN 815 (1042)
Q Consensus 800 -~~r~~~l~aI~lLa~~ 815 (1042)
.+|+.++..|...+..
T Consensus 96 ~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 96 PLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2555555555555444
No 82
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=1.1e+02 Score=37.66 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=47.3
Q ss_pred cCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCchhhhhhhhcchhHHHHHhhcCCCCCChHHHHHHHHHH----
Q 001622 656 PRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSV---- 731 (1042)
Q Consensus 656 prC~D~~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~i---- 731 (1042)
.||++|+++.++.|-+|--.++...-.++.+ ...|.++++.. .+ .+.+...+++-+ +++.+
T Consensus 104 vR~aHPd~~fv~aAe~a~~~~~e~ve~LNTn---------~~LY~~Lk~~l--~~--~~~l~~~d~e~~--v~~lll~DF 168 (704)
T KOG2090|consen 104 VRQAHPDPEFVEAAEEACRSMFELVESLNTN---------VALYQKLKKVL--QD--SSRLDDLDPETY--VARLLLDDF 168 (704)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhccC---------HHHHHHHHHHh--cC--cccccccCHHHH--HHHHHHHHH
Confidence 4899999999999999998888777666543 33455555421 00 111233334432 33332
Q ss_pred ---HccCChhHHHHHHHHH
Q 001622 732 ---CILLTKDELVATLHSC 747 (1042)
Q Consensus 732 ---~~~L~~~el~~~i~~l 747 (1042)
+.+|.+++...|+.-.
T Consensus 169 E~sGIhL~~~kr~kfv~Ls 187 (704)
T KOG2090|consen 169 EKSGIHLDPEKREKFVQLS 187 (704)
T ss_pred HhhcccCCHHHHHHHHHHh
Confidence 6778888777776543
No 83
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=29.53 E-value=2.2e+02 Score=27.14 Aligned_cols=64 Identities=14% Similarity=0.330 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhhCChHHHHHHHh
Q 001622 902 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILAR 978 (1042)
Q Consensus 902 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~~~l~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~l~~ 978 (1042)
..|+.++.+++. -.++.+..+-||+..+|-+-+.. .+=+..+++++..|+.+.+..++...++.
T Consensus 33 ~~~l~si~~lI~----~~~~~i~~~~pQI~a~L~sal~~---------~~l~~~al~~W~~fi~~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 33 KRALRSIEELIK----LGGSHISSARPQIMACLQSALEI---------PELREEALSCWNCFIKTLDEEDLGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHhCC---------hhhHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 347888888888 45688999999998888554422 01146799999999999988887766653
No 84
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=28.99 E-value=1.8e+02 Score=27.41 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=43.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccc
Q 001622 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELS 778 (1042)
Q Consensus 727 i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~ 778 (1042)
.++.....||+.....++..+.+.+.-.......-...++..+++.||..+.
T Consensus 17 ~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~ 68 (110)
T PF04003_consen 17 DIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLS 68 (110)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999999999988855556788899999999999999984
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=28.05 E-value=1.3e+03 Score=28.88 Aligned_cols=245 Identities=17% Similarity=0.194 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcc
Q 001622 538 NPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCT 617 (1042)
Q Consensus 538 ~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~ 617 (1042)
+..-++......+++... ++..+..++.++-.=+... -|.-+.|..-.+..+-+...
T Consensus 230 ~~Vr~Aa~~a~kai~~~~------~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap---------------- 286 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCL------SAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAP---------------- 286 (569)
T ss_pred hhhhHHHHHHHHHHHHhc------CcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhch----------------
Confidence 444456666666665543 2677777777777666555 45444444433333332211
Q ss_pred cchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHH------HhhCCCCCCCCC
Q 001622 618 HIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSI------SLSLPRPVGSSS 691 (1042)
Q Consensus 618 ~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~Ll~I------~~~~~~~~g~~~ 691 (1042)
+.++. ++-.++=-+.=.-.|+.++||+.+.+||..+-.+ +...++......
T Consensus 287 --~qLs~---------------------~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 287 --KQLSL---------------------CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALA 343 (569)
T ss_pred --HHHHH---------------------HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 11222 3444444455567899999999999999876532 211111000000
Q ss_pred CCc--hhhhhhhh-----------cchhHHHHHhhcCCCCCChHHHHHHHHHH---HccC-ChhHHHHHHHHHHHhcc--
Q 001622 692 GID--LELSYGAL-----------SSLEDVIAILRSDASIDPSEVFNRIVSSV---CILL-TKDELVATLHSCTTAIC-- 752 (1042)
Q Consensus 692 ~~~--~~~~~~~l-----------~~l~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~L-~~~el~~~i~~ll~~L~-- 752 (1042)
+-. .+.....+ .++.-+..+.++++...+.++=...+.+| ++.. .+.++..|+-.++.||.
T Consensus 344 dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred CcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 000 00000000 11122222333333322222222344444 4545 47777888777777765
Q ss_pred --CCCcchHHHHHHHHHHHHhhhccccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchhHHHHHhhhh
Q 001622 753 --DRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATA 829 (1042)
Q Consensus 753 --d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~VV~~~LL~~~ 829 (1042)
|+.+..-..|+..|..+++..|.+-++.-+|++...+.......+....-+.+...+.-++--|..+++- ..++.+
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~-~~~a~~ 501 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILP-EILANA 501 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHH-HHHHHH
Confidence 5555666788999999999988766322188888888766555555555566666666666666666665 666443
No 86
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=28.00 E-value=1.5e+03 Score=29.81 Aligned_cols=144 Identities=10% Similarity=-0.022 Sum_probs=93.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHhccCCCcchH--HHHHHHHHHHHhhhccccchhcHhhH-HHHHHHHhhhcCcHHHHHH
Q 001622 728 VSSVCILLTKDELVATLHSCTTAICDRTKQSA--EGAIQAVVEFVTKRGNELSETDVSRT-TQSLLSAAVHITDKHLRLE 804 (1042)
Q Consensus 728 ~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~--~~A~~~L~~~l~~rG~~l~e~dV~eI-v~~i~~~l~~i~~~~~r~~ 804 (1042)
+...++++|..+.++++..+++...-...... .-+=.++..|++.|-..+... .++. +.++++.+.+-.+|+.---
T Consensus 111 aL~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l~s~-~~D~~~~~f~~~~~GEKDPRnLml 189 (1030)
T KOG1967|consen 111 ALILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFLKSL-GPDFLFTAFCKVVDGEKDPRNLML 189 (1030)
T ss_pred HHHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHhcCCCCchhhHH
Confidence 34567889999999888888887665433222 456678888998887666544 4444 4448888999999987777
Q ss_pred HHHHHHHHhh-hccch-hHHHHHhhhhcccccccccccccCCCChh-------h----HHHHhccCcchHHHHHHHHHHH
Q 001622 805 TLGAISCLAE-NTNSK-IVFNEVLATAGKDIVTKDISRLRGGWPMQ-------D----AFHAFSQHAVLSFLFLEHLISA 871 (1042)
Q Consensus 805 ~l~aI~lLa~-~h~~~-VV~~~LL~~~~~~~~~~d~~~~~~plP~d-------~----~W~al~~~~~l~~~vL~~LL~~ 871 (1042)
+-+.+-.++. ..+-+ -+. .|..+- -|-|++. =.|-|-| + +=-++++.|..++-.+-.|++|
T Consensus 190 ~F~l~~~i~s~~~~l~~F~e-dlFeV~---~CYFPI~--Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEK 263 (1030)
T KOG1967|consen 190 VFSLVKEISSLNFPLGPFTE-DLFEVI---ACYFPIT--FKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEK 263 (1030)
T ss_pred HHHHHHHHhhccCCCCccHH-HHHHHh---heeeeee--ccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHH
Confidence 7777777776 33222 232 444221 2334433 1122212 1 6778899999999999999999
Q ss_pred hccCCCC
Q 001622 872 LNQTPFV 878 (1042)
Q Consensus 872 L~~~p~~ 878 (1042)
|+..-+.
T Consensus 264 L~as~~~ 270 (1030)
T KOG1967|consen 264 LNASDPS 270 (1030)
T ss_pred hccccch
Confidence 9875433
No 87
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=27.24 E-value=1.5e+03 Score=29.33 Aligned_cols=326 Identities=17% Similarity=0.226 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHHHhhhccccChHHHHHHHHHHhh-hhcCCCChhhHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHhcc
Q 001622 254 ETWDDMIINFLAESLDVVQETDWLISLGNAFTEQ-YVLYTPDDDHSALLHRCLGILLQKVAD--RNYVCDKIDWMYKQAN 330 (1042)
Q Consensus 254 ~~We~~Ll~fL~~sL~~i~d~~W~~~L~~el~~q-~~~y~~~~~eK~fL~k~lG~~L~~~~~--~~~V~~~L~~ll~~~~ 330 (1042)
+.|..|.....++.+..+.-.+.-.+|-+-+.+- +.-|+.+..|-+..+.++|++-..-.. +-+.-.-.-+++...+
T Consensus 730 e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 730 EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 4677777777777665555444444444433332 223556667777888888888766544 3333333445555556
Q ss_pred cCCCcchhhHHHHHHHHh-----------hhCHHHHH----------------HHHHHHHhhhccc-cch-------hhh
Q 001622 331 IAIPTNRLGLAKAMGLVA-----------ASHLDAVL----------------EMLKGILDNIGQS-LFQ-------RLL 375 (1042)
Q Consensus 331 ~~~~~ereG~A~~~G~~A-----------~~Hld~vL----------------~~L~~~~k~~~~~-~~~-------~~~ 375 (1042)
+..+.-|+--|..+|..| -+|+..|| ..+..+....+-+ .+. +..
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 666777765555555443 24554443 2222222221100 111 111
Q ss_pred hhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-----hhccChhHHHHHHHHHHHHHHHHH
Q 001622 376 SFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRL-----LHVRHHTAKQAVITAIDLLGRAVI 450 (1042)
Q Consensus 376 ~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~-----~~~kd~~lK~s~l~si~~i~~Al~ 450 (1042)
-+.|.++ +++...-+---|.||.++|.- +-+| | ||--+| +..+...++-+-+.+..-|++||-
T Consensus 890 PILknrh-----eKVqen~IdLvg~IadrgpE~-v~aR-E-----WMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 890 PILKNRH-----EKVQENCIDLVGTIADRGPEY-VSAR-E-----WMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred HhhhhhH-----HHHHHHHHHHHHHHHhcCccc-CCHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 1233332 456666666678888888762 2111 1 222222 123445667777777888888876
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCCCChhHHHHHHHHhhhccccC
Q 001622 451 NAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALP 530 (1042)
Q Consensus 451 ~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~L~~e~~~~ll~~c~sv~~lP 530 (1042)
+. +++..+|. .|..- -||. -+||++. .+.+=++|--|--||
T Consensus 958 Pq-------------dVLatLln--------nLkvq------eRq~--RvcTtva----------IaIVaE~c~pFtVLP 998 (1172)
T KOG0213|consen 958 PQ-------------DVLATLLN--------NLKVQ------ERQN--RVCTTVA----------IAIVAETCGPFTVLP 998 (1172)
T ss_pred HH-------------HHHHHHHh--------cchHH------HHHh--chhhhhh----------hhhhhhhcCchhhhH
Confidence 53 55555553 22211 1221 2233221 111223343222233
Q ss_pred CC------CC-CchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhh
Q 001622 531 ND------PI-DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLC 603 (1042)
Q Consensus 531 ~~------~~-~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~ 603 (1042)
.. +. ..++-.++++.-||+-+=.. .-+.+..+...|+-=+.-..---|+-|++.+-++-.
T Consensus 999 almneYrtPe~nVQnGVLkalsf~Feyigem-------skdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L------ 1065 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEM-------SKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL------ 1065 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHH-------hhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc------
Confidence 21 11 12244567777776655322 356777888887766655555678888888765433
Q ss_pred cccccccCCCCCcccchhhhhccccCCCCCCCcccCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHH
Q 001622 604 VIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQL 676 (1042)
Q Consensus 604 ~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~L 676 (1042)
..+.-+| -.-+=||+-.+-|-.-|+.|.+.+.-.+|+..+
T Consensus 1066 ---------------------g~~g~g~------------eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1066 ---------------------GVPGTGC------------EDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred ---------------------CCCCcCc------------HHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 1001111 125778999999999999999999988888766
No 88
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.69 E-value=6.2e+02 Score=24.91 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHhh--HHHHHHHHhhh--cC
Q 001622 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSR--TTQSLLSAAVH--IT 797 (1042)
Q Consensus 722 ~~~~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~e--Iv~~i~~~l~~--i~ 797 (1042)
...-.+|..|... +..-.+-+..+...|..++++...-|-.+|..+++..|..+..+ |+. -++.+..-+.. ..
T Consensus 19 ~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~-i~s~~fl~~l~~l~~~~~~~ 95 (133)
T cd03561 19 ALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ-VADKEFLLELVKIAKNSPKY 95 (133)
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH-HhhHHHHHHHHHHhCCCCCC
Confidence 3333455555433 23334556666677788888888999999999999999988433 553 22333332222 45
Q ss_pred cHHHHHHHHHHHHHHhhhcc
Q 001622 798 DKHLRLETLGAISCLAENTN 817 (1042)
Q Consensus 798 ~~~~r~~~l~aI~lLa~~h~ 817 (1042)
.+.+|+.++..|...+....
T Consensus 96 ~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 96 DPKVREKALELILAWSESFG 115 (133)
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 66788888888888776653
No 89
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=25.82 E-value=1.2e+02 Score=30.41 Aligned_cols=67 Identities=27% Similarity=0.300 Sum_probs=53.2
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHHhh-----hhccHHHHHHHHHHHHHHhh
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-----DEQNLAVQKAISELIVVMAS 68 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l-----~d~~~kVr~al~~~I~ama~ 68 (1042)
.+..||.++|.+.-+-||.+|-.++..+++.+.. ++.++-+.+|.+- ..+..+||.-++++|.+-+.
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999987653 5566666665442 13678999999999988774
No 90
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.81 E-value=1.8e+03 Score=30.07 Aligned_cols=288 Identities=14% Similarity=0.140 Sum_probs=158.2
Q ss_pred hHHHHHHHHHhhCCCCCcchhhhHHhhhhhhhhcccCCcccCCCcchHhhHHHHHHHHHHHhhhccccChHHHHHHHHHH
Q 001622 206 QATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFT 285 (1042)
Q Consensus 206 ~g~~~L~lL~~l~~~ih~~l~~~W~~~IP~Ll~~Le~~~~~~~~~~~q~~We~~Ll~fL~~sL~~i~d~~W~~~L~~el~ 285 (1042)
.-.++|.||+.+++++-.. ..-+..+|-++-.+++.. ..+ ...-...++
T Consensus 439 tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~------------------------a~V-----ra~Al~Tlt 487 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSE------------------------ADV-----RATALETLT 487 (1431)
T ss_pred hHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCch------------------------HHH-----HHHHHHHHH
Confidence 3578999999999998765 344566776665555431 000 011122333
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHHHHhh
Q 001622 286 EQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDN 365 (1042)
Q Consensus 286 ~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~ 365 (1042)
+-+.+-.+-|.+-+++|. +|+-=||..|+... ....-|-.+|.++|.-|..- ..=| +++..
T Consensus 488 ~~L~~Vr~~~~~daniF~------------eYlfP~L~~l~~d~--~~~~vRiayAsnla~LA~tA----~rFl-e~~q~ 548 (1431)
T KOG1240|consen 488 ELLALVRDIPPSDANIFP------------EYLFPHLNHLLNDS--SAQIVRIAYASNLAQLAKTA----YRFL-ELTQE 548 (1431)
T ss_pred HHHhhccCCCcccchhhH------------hhhhhhhHhhhccC--ccceehhhHHhhHHHHHHHH----HHHH-HHHHH
Confidence 444444455555566665 77777888888743 45678889999999877532 1112 22221
Q ss_pred hccccchhhhhhccCccccchhHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 001622 366 IGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLL 445 (1042)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i 445 (1042)
..-.++.++ ..++.+.+ --..+-.+.+..-||+.+.. ++.--++.+|++++++|..+
T Consensus 549 ---~~~~g~~n~---~nset~~~------------~~~~~~~~~L~~~V~~~v~s-----Llsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 549 ---LRQAGMLND---PNSETAPE------------QNYNTELQALHHTVEQMVSS-----LLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred ---HHhcccccC---cccccccc------------cccchHHHHHHHHHHHHHHH-----HHcCCchHHHHHHHHHHHHH
Confidence 111122222 22110000 00011222344445554443 44445578999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhc-cCCCCChhHHHHHHHHhh
Q 001622 446 GRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VEPKLTIETRNHVMKATL 524 (1042)
Q Consensus 446 ~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~-L~P~L~~e~~~~ll~~c~ 524 (1042)
+.=..+. +. -+-++.++++|+.++ |. +.|..=+.-|+.++- +.+.= .++.
T Consensus 606 C~FFGk~-ks--------ND~iLshLiTfLNDk--Dw---------~LR~aFfdsI~gvsi~VG~rs----~sey----- 656 (1431)
T KOG1240|consen 606 CVFFGKE-KS--------NDVILSHLITFLNDK--DW---------RLRGAFFDSIVGVSIFVGWRS----VSEY----- 656 (1431)
T ss_pred HHHhhhc-cc--------ccchHHHHHHHhcCc--cH---------HHHHHHHhhccceEEEEeeee----HHHH-----
Confidence 9887663 22 245777899998866 33 144445555554442 22110 0111
Q ss_pred hccccCCCC---CCchHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHh
Q 001622 525 GFFALPNDP---IDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRT 601 (1042)
Q Consensus 525 sv~~lP~~~---~~~~~~l~~al~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~ 601 (1042)
-+|-.. .+..+..+.+....|..|.....-+ -..+-+|++...|.+..++.|-|.-++..|...-+.+.+
T Consensus 657 ---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~----K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 657 ---LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR----KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred ---HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc----hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 111111 1111222222223333333332211 245668999999999999999999999999888887765
Q ss_pred h
Q 001622 602 L 602 (1042)
Q Consensus 602 ~ 602 (1042)
.
T Consensus 730 a 730 (1431)
T KOG1240|consen 730 A 730 (1431)
T ss_pred h
Confidence 4
No 91
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=25.46 E-value=7e+02 Score=25.07 Aligned_cols=89 Identities=9% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHhhhccccchhcHh--hHHHHHHHHhh-----hcC
Q 001622 725 NRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAV-----HIT 797 (1042)
Q Consensus 725 ~~i~~~i~~~L~~~el~~~i~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~l~e~dV~--eIv~~i~~~l~-----~i~ 797 (1042)
-++|..|... +.--.+-+..+...|..++++...-|-.+|..+++..|..+..+ |+ +.++.+..-+. ...
T Consensus 23 leicD~In~~--~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 23 QAFCEQINKE--PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE-VGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HHhHHHHHHHHHHhccccCCCCC
Confidence 3455555332 22334556667777888888888999999999999999999443 65 22233333221 124
Q ss_pred cHHHHHHHHHHHHHHhhhc
Q 001622 798 DKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 798 ~~~~r~~~l~aI~lLa~~h 816 (1042)
.+.+|+.++.-|..-+...
T Consensus 100 ~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 100 SEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4566666666666555443
No 92
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.79 E-value=1.4e+02 Score=29.68 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=49.8
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhcc---chHHHHHHHHHhhhh-ccHH-HHHHHHHHHHHHhh
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLA-VQKAISELIVVMAS 68 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~d-~~~k-Vr~al~~~I~ama~ 68 (1042)
+|..||.++|...-.-||.+|-.++..+++.... .+.++ ..++.++.+ .+.. ||+.++++|.+.+.
T Consensus 41 ~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl-~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL-NELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999988876542 44454 455555543 3333 99999999988765
No 93
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.31 E-value=3.5e+02 Score=33.50 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCCcccchhhhhccccCCCCCCCcccCCch
Q 001622 563 ADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSR 642 (1042)
Q Consensus 563 ~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~ 642 (1042)
.+-.+.++.|+..-.-|+.---|.|.+++++.+.....+ ++..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--------------------IDe~----------------- 128 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--------------------IDEV----------------- 128 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--------------------HHHH-----------------
Confidence 456788899999999999999999999999888773332 3322
Q ss_pred hhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHH
Q 001622 643 EALCLGNRVIMYLPRCADTDSEVRKISAQILDQL 676 (1042)
Q Consensus 643 ~~~~lG~Lvg~l~prC~D~~~~ir~~A~e~i~~L 676 (1042)
...-|+--+.-|-.|..+.||.+|+-|+.++
T Consensus 129 ---l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 129 ---LANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred ---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344555578889999999999999998876
No 94
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.12 E-value=1.4e+03 Score=28.15 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhcccCCCcchhhHHHHHHHHhhhCHHHHHHHHHHHHhhhccccchhhhhhccCcc
Q 001622 303 RCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSY 382 (1042)
Q Consensus 303 k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~ 382 (1042)
+.+--.|..+....-++ .|...+.+-+.+ +.++.-....+......--..+++.+.++.+.....
T Consensus 344 ~~~~Dal~~~GT~~a~~-~i~~~i~~~~~~-~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~------------- 408 (574)
T smart00638 344 RIFLDAVAQAGTPPALK-FIKQWIKNKKIT-PLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQ------------- 408 (574)
T ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHcCCCC-HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccc-------------
Confidence 33444555665555565 444455523322 223222222222223344667778887777642110
Q ss_pred ccchhHhHHHHHHHHHHHHHhc-CCch-----hHHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHHHHHHHHHhhh
Q 001622 383 RMEESDDIHAALALMYGYAAKY-APST-----VIEARIDALVGTNMLSRLL---HVRHHTAKQAVITAIDLLGRAVINAA 453 (1042)
Q Consensus 383 ~~~e~~~~ks~l~l~YG~va~~-ap~~-----~ll~rve~~I~~~i~~~~~---~~kd~~lK~s~l~si~~i~~Al~~~~ 453 (1042)
....++.+.+++||.++.+ |-.. .+.. .+.+.+...+. ..+|..-++.+|+|+.-+|.
T Consensus 409 ---~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------ 475 (574)
T smart00638 409 ---KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE----ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------ 475 (574)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH----HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC------
Confidence 1135888999999998862 2111 1111 12223333222 23555566777766553221
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCCC
Q 001622 454 ENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPK 510 (1042)
Q Consensus 454 ~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P~ 510 (1042)
+..+..+..++.... .. | ..+|..|+.|+..+.+..|.
T Consensus 476 -----------~~~i~~l~~~l~~~~--~~--~----~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 476 -----------PSSIKVLEPYLEGAE--PL--S----TFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred -----------hhHHHHHHHhcCCCC--CC--C----HHHHHHHHHHHHHHHHhCch
Confidence 233445555665221 11 1 13889999998877765554
No 95
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=1.7e+03 Score=28.83 Aligned_cols=487 Identities=15% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhc-cCCCCChhHHHHHHHHhh-hccccCCCCCCch
Q 001622 460 PLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VEPKLTIETRNHVMKATL-GFFALPNDPIDVV 537 (1042)
Q Consensus 460 ~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~-L~P~L~~e~~~~ll~~c~-sv~~lP~~~~~~~ 537 (1042)
+-++=++++..|..-+-+|+... +|+-.+.|+-+++. +.|.--.+.-++++-++. + ..+.+++ -
T Consensus 123 P~n~wp~li~~lv~nv~~~~~~~----------~k~~slealGyice~i~pevl~~~sN~iLtaIv~g--mrk~e~s--~ 188 (859)
T KOG1241|consen 123 PQNQWPELIVTLVSNVGEEQASM----------VKESSLEALGYICEDIDPEVLEQQSNDILTAIVQG--MRKEETS--A 188 (859)
T ss_pred chhhCHHHHHHHHHhcccccchH----------HHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhh--ccccCCc--h
Confidence 34566799999999888777554 67779999999986 777722222333433322 2 1111211 1
Q ss_pred HHHHHHHHHHHHHHHhh--cCCCCCCcHHHHHHHHHhHhHhhcChhHHHhhHHHHHHHHHHHHHHhhhcccccccCCCCC
Q 001622 538 NPLIDNLITLLCAILLT--SGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGS 615 (1042)
Q Consensus 538 ~~l~~al~~lL~~ll~~--~~~d~~~~~~~L~~il~~l~pWl~S~k~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~ 615 (1042)
..=+-++..++.++-.. +.+ .-.+-+.|.+..-.=-+|+...-|..|+++..+++.-|+++
T Consensus 189 ~vRLaa~~aL~nsLef~~~nF~----~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~------------- 251 (859)
T KOG1241|consen 189 AVRLAALNALYNSLEFTKANFN----NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEF------------- 251 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc----cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 22234444444444222 222 13445556665555567888888999999999999988765
Q ss_pred cccchhhhhccccCCCCCCCcccCCchhhhhhhh-HHHHhhcCccCCChhHHHHHHHHHHHHH----HHHhhCCCCCCCC
Q 001622 616 CTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGN-RVIMYLPRCADTDSEVRKISAQILDQLF----SISLSLPRPVGSS 690 (1042)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~ps~~~~p~~~~~~lG~-Lvg~l~prC~D~~~~ir~~A~e~i~~Ll----~I~~~~~~~~g~~ 690 (1042)
+.. .+|. +.++..=+...++.+|..+|+|==.... .|+.-+ .+..
T Consensus 252 ------m~~---------------------yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~---~e~~ 301 (859)
T KOG1241|consen 252 ------MEP---------------------YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY---GEAV 301 (859)
T ss_pred ------HHH---------------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 211 2333 4444444555777777666555322221 111111 0111
Q ss_pred CCCchhh-hhhhhcchhHH----HHH-hhcCCC--CCC--hHHHHHHHHHHHccCChhHHHHHHHHHHH-hccCCCcchH
Q 001622 691 SGIDLEL-SYGALSSLEDV----IAI-LRSDAS--IDP--SEVFNRIVSSVCILLTKDELVATLHSCTT-AICDRTKQSA 759 (1042)
Q Consensus 691 ~~~~~~~-~~~~l~~l~~~----~~~-~~~~~~--~~~--~~~~~~i~~~i~~~L~~~el~~~i~~ll~-~L~d~~~~~~ 759 (1042)
..+..+. .+=+...+.++ ++. .|.+-. .|+ +.+--..|=.+.-..--+.++.-|+.-++ .+.+++-.-.
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNR 381 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhh
Confidence 1110000 00011111111 111 121211 111 11110111111111112334445666666 8888888888
Q ss_pred HHHHHHHHHHHhhhcc-ccchhcHhhHHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhccchhHHH--------HHhhhhc
Q 001622 760 EGAIQAVVEFVTKRGN-ELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFN--------EVLATAG 830 (1042)
Q Consensus 760 ~~A~~~L~~~l~~rG~-~l~e~dV~eIv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h~~~VV~~--------~LL~~~~ 830 (1042)
.+|+..+-.++..+.. ++... |+.-+.+|...+. ...-.+|.++-..+.-++.+-+...... .|+.-
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g-- 457 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG-- 457 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH--
Confidence 9999999999987665 33334 8888888888776 5555788888888887776655444321 33311
Q ss_pred ccccccccccccC--CCChh----hHHHHhccC---cchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccchhhH
Q 001622 831 KDIVTKDISRLRG--GWPMQ----DAFHAFSQH---AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDIL 901 (1042)
Q Consensus 831 ~~~~~~d~~~~~~--plP~d----~~W~al~~~---~~l~~~vL~~LL~~L~~~p~~~~~~~~~~~~~~~t~~~~~~~~~ 901 (1042)
-.|.|+..- .|-+. -+|.|.-+. ++.. .+.+.++..|-+.--..+ + ++.+ .-
T Consensus 458 ----L~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~d----g---------nqsN-LR 518 (859)
T KOG1241|consen 458 ----LNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRAD----G---------NQSN-LR 518 (859)
T ss_pred ----hhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccc----c---------chhh-HH
Confidence 122221110 00000 034443332 1111 233333332222110100 0 1111 23
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHhhhHHHHHHHHHHhhhcc--CCC-C--CCCChH-HHHHHHHHHHHHhhCC--hHHH
Q 001622 902 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHG--LAS-S--GQHEPL-RAILTSFQAFCECVGD--LEMR 973 (1042)
Q Consensus 902 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLLlql~~~~~--l~~-~--~~~~P~-~~aleAlk~lL~~~g~--~~~~ 973 (1042)
.||-.||.|+..-.-+.+-.+|.++++-++. +++-++. ..+ . .+++-. +..-..++......+. .++.
T Consensus 519 ~AAYeALmElIk~st~~vy~~v~~~~l~il~----kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~ 594 (859)
T KOG1241|consen 519 SAAYEALMELIKNSTDDVYPMVQKLTLVILE----KLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS 594 (859)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 6899999999997767777888877776666 4444443 110 0 011111 1222333333444333 1111
Q ss_pred HH--------HHhcCCCC-chhhhHHhHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCCCchHHH-HHHHH
Q 001622 974 KI--------LARDGEQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA-AALSE 1035 (1042)
Q Consensus 974 ~~--------l~~~~~W~-~~~~~~~GV~lLAram~~~~~~~i~~il~~L~~~l~s~~~~qRi~a~-af~sE 1035 (1042)
.. ++. +.-. -.++-.-.|..++..+...=-.+++.+.-||...|++-.|.|=..++ ++...
T Consensus 595 d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgd 665 (859)
T KOG1241|consen 595 DQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGD 665 (859)
T ss_pred HHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 11 111 1111 33444455666666665544456677777777777777777654443 44443
No 96
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.75 E-value=6.3e+02 Score=24.25 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhhhhhccCC
Q 001622 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1042)
Q Consensus 430 kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eLl~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait~L~~L~P 509 (1042)
++...|..-++|+..+-+...+. .=.-++++..|+..=++.+. .|..|+.+-..+++.
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~g~~-------i~~a~pQI~acL~saL~~~e-------------L~~~al~~W~~~i~~-- 84 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLMGKH-------ISSALPQIMACLQSALEIPE-------------LRSLALRCWHVLIKT-- 84 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCchh-------------HHHHHHHHHHHHHHh--
Confidence 35567999999998887753322 12236788888887665332 344577777777764
Q ss_pred CCChhHHHHHHHHhh
Q 001622 510 KLTIETRNHVMKATL 524 (1042)
Q Consensus 510 ~L~~e~~~~ll~~c~ 524 (1042)
|++++-..+++..+
T Consensus 85 -L~~~~l~~ll~~~~ 98 (107)
T smart00802 85 -LKEEELGPLLDQIF 98 (107)
T ss_pred -CCHHHHHHHHHHHH
Confidence 55577777766555
No 97
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=3.8e+02 Score=34.07 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHH
Q 001622 388 DDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQL 467 (1042)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~~~ll~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~Al~~~~~~~~~f~f~~k~eL 467 (1042)
+++|-+...+.|-|..+-|.... + +++-+.+++.+.++-.- -.-+|.|... .+ -.+-
T Consensus 569 DDVrRaAVialGFVl~~dp~~~~-s---------~V~lLses~N~HVRyGa---A~ALGIaCAG---tG-------~~eA 625 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDPEQLP-S---------TVSLLSESYNPHVRYGA---AMALGIACAG---TG-------LKEA 625 (929)
T ss_pred hHHHHHHHHHheeeEecChhhch-H---------HHHHHhhhcChhhhhhH---HHHHhhhhcC---CC-------cHHH
Confidence 47888888899999888877644 2 33334456665544321 2223444221 12 1244
Q ss_pred HHHHHHHhccCCCCcccCchhhHHHHHHHHHHHhh
Q 001622 468 LDYILTLMGREENDSFADSSIELLHTQALALSACT 502 (1042)
Q Consensus 468 l~~l~~li~~Ep~d~L~s~~~~l~~vr~~a~~ait 502 (1042)
++.+--++. .|.|. |||-||.|.+
T Consensus 626 i~lLepl~~-D~~~f----------VRQgAlIa~a 649 (929)
T KOG2062|consen 626 INLLEPLTS-DPVDF----------VRQGALIALA 649 (929)
T ss_pred HHHHhhhhc-ChHHH----------HHHHHHHHHH
Confidence 554444443 45444 8888888765
No 98
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=21.46 E-value=2.4e+03 Score=29.88 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=78.5
Q ss_pred HH-HHHHHHHHHHccCCcchHHHHHHh-----hhHHHHHHHHHHhh-hcc-CCCC-------------------C-----
Q 001622 901 LQ-AAILALTAFFRGGGKVGKKAVEKS-----YAPVLAALTLQLGS-CHG-LASS-------------------G----- 948 (1042)
Q Consensus 901 ~l-aA~~aL~Ell~~~~~~~~~av~~~-----fp~Lf~aLLlql~~-~~~-l~~~-------------------~----- 948 (1042)
++ ||+|+|--+=|.. |+|.++..+ .|+ |+|+-| .++ .... |
T Consensus 314 ~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIae-----Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NK 386 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAE-----LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANK 386 (2195)
T ss_pred hhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHH-----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccch
Confidence 56 9999999999977 999987643 444 334433 333 2111 1
Q ss_pred -CCChHHHHHHHHHHHHHhh--CChHHHHHHHhcCCCC----chhhhHH--hHHHHHHHHHhhCC-hhHHHHHHHHHHhh
Q 001622 949 -QHEPLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWIN--LIGDVAGCVSIKRP-KEVQTICLILTKSI 1018 (1042)
Q Consensus 949 -~~~P~~~aleAlk~lL~~~--g~~~~~~~l~~~~~W~----~~~~~~~--GV~lLAram~~~~~-~~i~~il~~L~~~l 1018 (1042)
.+.-.+-+++|+=+-|... ...+|.+-+=++-.|. ....+.+ -|+-||.|-.+++- -.++.|+..||-+-
T Consensus 387 a~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS 466 (2195)
T KOG2122|consen 387 ATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS 466 (2195)
T ss_pred hhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh
Confidence 1112234555554444433 3456777777788898 2333333 35566666666554 57899999999873
Q ss_pred cCCCCC-----CchHHHHHHHHhhcCc
Q 001622 1019 NRQQRF-----QREAAAAALSEFVRYR 1040 (1042)
Q Consensus 1019 ~s~~~~-----qRi~a~af~sELL~~~ 1040 (1042)
-.--+. +-=-|.||++-+|.+-
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYE 493 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhcccc
Confidence 322222 2223568888887653
Done!