Query 001622
Match_columns 1042
No_of_seqs 204 out of 304
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:13:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001622.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_920-923//hhsearch_pdb/001622hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 89.3 51.7 121 4-145 54-185 (852)
2 1b3u_A Protein (protein phosph 1.0 1 1 69.1 40.8 107 2-130 14-120 (588)
3 1qgr_A Protein (importin beta 1.0 1 1 67.0 51.9 60 11-71 50-121 (876)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 64.6 58.9 148 329-506 443-598 (1230)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 63.9 49.2 99 389-506 384-482 (861)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 59.3 50.2 204 3-243 11-225 (1230)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 57.8 54.1 75 11-87 54-142 (861)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 55.2 45.7 73 742-816 629-701 (852)
9 1qgr_A Protein (importin beta 1.0 1 1 51.7 36.6 212 564-816 447-681 (876)
10 1b3u_A Protein (protein phosph 1.0 1 1 51.2 32.4 67 742-812 519-585 (588)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=89.27 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=75.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCHHHC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC-CCE
Q ss_conf 2131365531157799997653079912210-52588999998763100489999999999997511510277676-320
Q 001622 4 LNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGE-LFV 81 (1042)
Q Consensus 4 l~~l~~~~E~~Rvg~L~ilrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~yl~~~~g~-~~i 81 (1042)
+..+.+.+..+|--+...||..+.+.-..+. +.+..|-..+-..+.|++..||+...++|..++.+++ ++.| .++
T Consensus 54 l~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~---~~~wp~ll 130 (852)
T 4fdd_A 54 LTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE---LQNWPDLL 130 (852)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT---TTTCTTHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC---CCCCHHHH
T ss_conf 856688986799999999999898744779999999999999998749989999999999999998648---13568999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHHCCC
Q ss_conf 02310222357211122244466788890479999997788871460235---------67239987732056
Q 001622 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM---------QHILWPLLLKMIIP 145 (1042)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m---------~~vLWP~LL~~i~p 145 (1042)
.+++....- ....+|.....+|..+....+.. -..+.|.++..+-.
T Consensus 131 ~~L~~~l~~------------------~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 185 (852)
T 4fdd_A 131 PKLCSLLDS------------------EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 185 (852)
T ss_dssp HHHHHHHSC------------------SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC
T ss_pred HHHHHHHCC------------------CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCC
T ss_conf 999998709------------------9989999999999999998578756343133299999999998567
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=69.08 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 22213136553115779999765307991221052588999998763100489999999999997511510277676320
Q 001622 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1042)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~ilrhlins~~~~~~~k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~yl~~~~g~~~i 81 (1042)
.|+..+++.+...|..+...+..+....++. .....++..++..+ |.+..||+++++.+..++.+ .++....
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~--~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~-----~~~~~~~ 85 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTL-----VGGPEYV 85 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGG-----GTSGGGG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHC-----CCCHHHH
T ss_conf 9999850621999999997199999986979--89998998898755-78589999999999778760-----5859899
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 0231022235721112224446678889047999999778887146023
Q 001622 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE 130 (1042)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~ 130 (1042)
..++..... ....+...+|....++|.-+....+.
T Consensus 86 ~~ll~~L~~--------------l~~~~~~~vR~~a~~~L~~l~~~~~~ 120 (588)
T 1b3u_A 86 HCLLPPLES--------------LATVEETVVRDKAVESLRAISHEHSP 120 (588)
T ss_dssp GGGHHHHHH--------------HTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHH--------------HHHCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 998999999--------------87476079999999999999997999
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=66.98 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCH--------HHCC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 531157799997653079912--------2105----258899999876310048999999999999751151
Q 001622 11 EEHLSVGALYVLKHLLPRSSE--------AWHS----KRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCY 71 (1042)
Q Consensus 11 ~E~~Rvg~L~ilrhlins~~~--------~~~~----k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~y 71 (1042)
+..+|--+..+||..+....+ .|.. -+..|-..+-..+.+.+.++ ...+++|..++.+.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~ 121 (876)
T 1qgr_A 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI 121 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHC
T ss_conf 879999999999876055434767899864406999999999999999867994788-999999999998467
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=64.61 Aligned_cols=148 Identities=7% Similarity=0.038 Sum_probs=59.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1558872014699999999620-------789999999999951014431123100257644200576999999989999
Q 001622 329 ANIAIPTNRLGLAKAMGLVAAS-------HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYA 401 (1042)
Q Consensus 329 ~~~~~~~ereG~A~~~G~~A~~-------Hld~vL~~L~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~ks~l~l~YG~v 401 (1042)
.+..++..|+++..++|-++.. |++.++..+.+ .+++++. ...++...+..++.+
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~---------------~L~d~~~---~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF---------------SLNDKSS---SSNLKIDALSCLYVI 504 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH---------------HTTCSSS---CHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---------------HHCCCCC---CCHHHHHHHHHHHHH
T ss_conf 6137787999999999999997611057779999999999---------------9748788---516899999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHCCCCC
Q ss_conf 821991458998977778779989832067468999999999999998731216997788-8879999999987213899
Q 001622 402 AKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPL-KKRDQLLDYILTLMGREEN 480 (1042)
Q Consensus 402 a~~ap~~~il~rie~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~ai~~~~~~~~~f~f-~~k~eLl~~l~~~i~~Ep~ 480 (1042)
.....++.+.+.++ .+++.++..+. .+...++...+.++..+.+++.+. .......+ ...++++..++..++....
T Consensus 505 ~~~~~~~~~~~~l~-~llp~L~~~l~-d~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~~~~~~~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 505 LCNHSPQVFHPHVQ-ALVPPVVACVG-DPFYKITSEALLVTQQLVKVIRPL-DQPSSFDATPYIKDLFTCTIKRLKAADI 581 (1230)
T ss_dssp HHSSCGGGGHHHHT-TTHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCCS-SSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHCCHHHHHHHHH-HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98389887886799-99999999971-424689999999999999871675-5565323278999999999998732699
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76667056677799999999664204
Q 001622 481 DSFADSSIELLHTQALALSACTTLVT 506 (1042)
Q Consensus 481 d~L~s~~~~l~~~r~~al~ait~L~~ 506 (1042)
+. .+|+.|+.++..|..
T Consensus 582 ~~---------~vr~~a~~~lg~L~~ 598 (1230)
T 1u6g_C 582 DQ---------EVKERAISCMGQIIC 598 (1230)
T ss_dssp CH---------HHHHHHHHHHHHHHH
T ss_pred CH---------HHHHHHHHHHHHHHH
T ss_conf 88---------999999999999999
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=63.89 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 69999999899998219914589989777787799898320674689999999999999987312169977888879999
Q 001622 389 DIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLL 468 (1042)
Q Consensus 389 ~~ks~l~l~YG~va~~ap~~~il~rie~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~ai~~~~~~~~~f~f~~k~eLl 468 (1042)
.+|.+.+.+.|.++..+.++.+.+.++. +++.+...+ ...++.++.+...++..++..+.+. .. .-..-.+++
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~-il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-~~----~~~~~~~~l 456 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQ-ALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-ID----PQQHLPGVV 456 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHH-HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-SC----TTTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHH-CC----CHHHHHHHH
T ss_conf 6999999999999859987888998999-999999882-8995999999999999999873540-48----788899999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998721389976667056677799999999664204
Q 001622 469 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 506 (1042)
Q Consensus 469 ~~l~~~i~~Ep~d~L~s~~~~l~~~r~~al~ait~L~~ 506 (1042)
..++..++.+ + ++|..|..++..+++
T Consensus 457 ~~l~~~l~~~-------~-----~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 457 QACLIGLQDH-------P-----KVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHTSC-------H-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-------H-----HHHHHHHHHHHHHHH
T ss_conf 9999976447-------2-----899999999999998
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=59.26 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=114.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 221313655311577999976530799122105-2588999998763100489999999999997511510277676320
Q 001622 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS-KRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1042)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~ilrhlins~~~~~~~-k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~yl~~~~g~~~i 81 (1042)
++.++.+.+...|-.++.-|...++.....+.+ ....++..+-..+.|++.+||.+-+..+..++.+.. ...+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------~~~~ 84 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------EYQV 84 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------HHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHH
T ss_conf 9975589878599999999999974166578756799999999998669998999999999999997587------9899
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHCCCC----CCCCH
Q ss_conf 02310222357211122244466788890479999997788871460235------672399877320563----56420
Q 001622 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSA 151 (1042)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m------~~vLWP~LL~~i~p~----~yT~a 151 (1042)
++++..+... . . .+...+|..+.++|..+....+.. ..-.||.++.++... +-...
T Consensus 85 ~~i~~~Ll~~---l----------~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 85 ETIVDTLCTN---M----------L-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHH---T----------T-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHH---H----------C-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999998---6----------6-983889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 33388999999974126898653344577899987999999999816964460569999999986099999610344775
Q 001622 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231 (1042)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~ 231 (1042)
-...+.++..++... +... .|--..++..++-.+.+|... --..++..+..+....... ..+.
T Consensus 151 ~~~al~~l~~~~~~~---~~~l---------~~~~~~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~---~~~~ 213 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQ---GGLL---------VNFHPSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNI---VFVD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHT---CSSC---------TTTHHHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTT
T ss_pred HHHHHHHHHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHH---HHHH
T ss_conf 999999999999982---7677---------887999999999987599689--9999999999999856899---9999
Q ss_pred HHHHHHHCCCCC
Q ss_conf 245432003677
Q 001622 232 EIPKMKAYVSDT 243 (1042)
Q Consensus 232 ~IP~Ll~~Le~~ 243 (1042)
.+|.+++.|...
T Consensus 214 ~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 214 LIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986167
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=57.81 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHCCCCC-----------HH-H-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 53115779999765307991-----------22-1-05258899999876310048999999999999751151027767
Q 001622 11 EEHLSVGALYVLKHLLPRSS-----------EA-W-HSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSG 77 (1042)
Q Consensus 11 ~E~~Rvg~L~ilrhlins~~-----------~~-~-~~k~~~i~~~vk~~l~d~~~kVr~ai~~~I~ama~~~yl~~~~g 77 (1042)
+..+|--+..+||..+.+.. .. + ++-+..|-..+-..+.+.+.+||+.+.+.|..++.+.|-. +.
T Consensus 54 ~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~ 131 (861)
T 2bpt_A 54 KLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH--GA 131 (861)
T ss_dssp CHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--TC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 8679999999987022575748789999767662999999999999999877996379999999999999846764--55
Q ss_pred CC-CEEEEEEC
Q ss_conf 63-20023102
Q 001622 78 EL-FVEYLVRH 87 (1042)
Q Consensus 78 ~~-~i~fiv~~ 87 (1042)
|+ ++.+++..
T Consensus 132 w~~ll~~L~~~ 142 (861)
T 2bpt_A 132 WPELMKIMVDN 142 (861)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 49999999998
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=55.17 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999999972158994008999999999996211553300073589999998621170989999999999986112
Q 001622 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 742 ~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~L~e~dV~~Iv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h 816 (1042)
+++-.+++.+.|+.....+.|..++..+.+.-|.++..- +++++..+...+ ...+..+|..+..++..++.+.
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l-~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNL-NPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTC-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 189999998389984499999999999999816888987-999999999876-9420689999999999999971
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=51.70 Aligned_cols=212 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999999676863192488765799999999999983000233356888876420001000015777899765688401
Q 001622 564 DQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSRE 643 (1042)
Q Consensus 564 ~~L~~ll~~l~pWl~S~~~hEReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~ps~~~~p~~~ 643 (1042)
..+..+++.+...+.+. ..-|++|+.++..+...+.+.... ..+.. ..+...+.|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~-------------------~~~~~--~~~~~~l~~--- 501 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADV-------------------ADDQE--EPATYCLSS--- 501 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSC-------------------TTSCC--CCCCCSSTT---
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCC-------------------CCCCC--CCCCHHHHH---
T ss_conf 77999999999987588-889999999999999985020123-------------------44445--554032157---
Q ss_pred HHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHC------
Q ss_conf 223466879853574589---92599999999999999995198988899987534346430442689997413------
Q 001622 644 ALCLGNRVIMYLPRCADT---DSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRS------ 714 (1042)
Q Consensus 644 ~~~lG~lvg~l~prC~D~---~~~ir~~A~e~i~~Ll~I~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~------ 714 (1042)
.+..++..+.....++ +..+|..+.+++..+... .|. +.. +.. ..+ +..+.+....
T Consensus 502 --~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~-------~~~--~~~-~~~-~~l--~~~l~~~l~~~~~~~~ 566 (876)
T 1qgr_A 502 --SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN-------SAK--DCY-PAV-QKT--TLVIMERLQQVLQMES 566 (876)
T ss_dssp --THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT-------CCS--TTH-HHH-HHH--HHHHHHHHHHHHTTTT
T ss_pred --HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-------CCH--HHH-HHH-HHH--HHHHHHHHHHHHHHHH
T ss_conf --6999999999997276742046999999999999997-------743--118-999-999--9999999999998871
Q ss_pred C-CCCCCHHHH-------HHHHHHHHCCCCHHH----HHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 8-899985879-------999999970089568----9999999997215899--4008999999999996211553300
Q 001622 715 D-ASIDPSEVF-------NRIVSSVCILLTKDE----LVATLHSCTTAICDRT--KQSAEGAIQAVVEFVTKRGNELSET 780 (1042)
Q Consensus 715 ~-~~~~~~~~~-------~~i~~~i~k~L~~~e----l~~li~~ll~~L~d~~--~~~~~~A~~~L~~~l~~rG~~L~e~ 780 (1042)
. ...+++..+ ......+...+.... +..++-.++..+.+.. ...-..+..++..+.+.-|..+..-
T Consensus 567 ~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 646 (876)
T 1qgr_A 567 HIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646 (876)
T ss_dssp SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24886359999999999999999999982854205789999999999998536888850899999999999987609999
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 073589999998621170989999999999986112
Q 001622 781 DVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1042)
Q Consensus 781 dV~~Iv~~i~~~l~~i~~~~~r~~~l~aI~lLa~~h 816 (1042)
++.++..+...+..-.++.+|..+..++..+++..
T Consensus 647 -~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 647 -MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp -HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -99999999998758650879999999999999988
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=51.22 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999997215899400899999999999621155330007358999999862117098999999999998
Q 001622 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCL 812 (1042)
Q Consensus 742 ~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~rG~~L~e~dV~~Iv~~i~~~l~~i~~~~~r~~~l~aI~lL 812 (1042)
.++-.++..+.|+....-..++..+..+.+.-|.+. ....+...+.++....++.+|..+..++..+
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999866789986279999999999999865364----5999999999874799666999999999976
Done!