Query 001623
Match_columns 1042
No_of_seqs 222 out of 309
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2011 Sister chromatid cohes 100.0 8E-173 2E-177 1552.8 74.2 919 71-1027 77-1022(1048)
2 COG5537 IRR1 Cohesin [Cell div 100.0 5.4E-46 1.2E-50 422.3 46.9 500 75-619 84-648 (740)
3 PF08514 STAG: STAG domain ; 100.0 1.5E-29 3.3E-34 245.0 12.3 113 151-263 4-118 (118)
4 PF12717 Cnd1: non-SMC mitotic 97.1 0.0028 6.1E-08 66.3 9.7 93 291-390 1-93 (178)
5 COG5537 IRR1 Cohesin [Cell div 96.3 0.0044 9.5E-08 73.8 4.9 128 273-421 162-300 (740)
6 PF01602 Adaptin_N: Adaptin N 96.2 0.34 7.4E-06 58.4 21.2 129 289-421 125-256 (526)
7 PF12717 Cnd1: non-SMC mitotic 96.1 0.15 3.2E-06 53.4 14.9 155 330-517 1-158 (178)
8 PF12348 CLASP_N: CLASP N term 95.7 0.29 6.2E-06 52.7 15.4 107 282-390 98-207 (228)
9 PF13646 HEAT_2: HEAT repeats; 95.1 0.11 2.4E-06 46.9 8.4 77 288-384 10-87 (88)
10 PRK09687 putative lyase; Provi 94.7 0.13 2.7E-06 58.0 9.3 118 287-421 100-217 (280)
11 PRK13800 putative oxidoreducta 94.0 0.27 5.8E-06 64.0 11.4 48 289-344 632-679 (897)
12 PRK13800 putative oxidoreducta 93.9 0.19 4.1E-06 65.3 9.6 117 284-422 748-864 (897)
13 PRK09687 putative lyase; Provi 93.9 0.3 6.5E-06 55.0 10.0 119 289-421 65-184 (280)
14 KOG1020 Sister chromatid cohes 93.7 0.33 7.1E-06 63.7 10.8 139 282-422 1231-1402(1692)
15 PTZ00429 beta-adaptin; Provisi 93.0 0.23 4.9E-06 62.9 7.9 99 284-391 111-210 (746)
16 cd00020 ARM Armadillo/beta-cat 92.6 0.45 9.7E-06 44.8 7.6 98 289-388 18-119 (120)
17 KOG0414 Chromosome condensatio 92.3 0.57 1.2E-05 60.4 10.0 171 167-406 896-1074(1251)
18 PF12830 Nipped-B_C: Sister ch 92.2 0.38 8.3E-06 50.9 7.2 65 357-421 5-70 (187)
19 PF13646 HEAT_2: HEAT repeats; 91.9 0.36 7.8E-06 43.6 5.9 76 326-418 9-85 (88)
20 cd00020 ARM Armadillo/beta-cat 91.1 1 2.3E-05 42.2 8.4 107 313-421 3-116 (120)
21 PF12348 CLASP_N: CLASP N term 89.7 1.6 3.5E-05 46.9 9.3 60 288-347 141-207 (228)
22 PF10508 Proteasom_PSMB: Prote 89.5 2.8 6.1E-05 51.1 12.3 98 291-390 51-149 (503)
23 PF04826 Arm_2: Armadillo-like 88.4 2.3 5E-05 47.4 9.6 94 290-388 25-123 (254)
24 KOG2025 Chromosome condensatio 87.0 18 0.00039 45.2 16.3 137 275-418 42-186 (892)
25 KOG2023 Nuclear transport rece 86.6 1.4 3E-05 54.0 6.8 101 287-391 183-287 (885)
26 PF12719 Cnd3: Nuclear condens 85.9 5.2 0.00011 45.3 10.8 140 279-420 28-180 (298)
27 PF01602 Adaptin_N: Adaptin N 85.7 20 0.00044 43.2 16.5 96 289-389 426-524 (526)
28 KOG1820 Microtubule-associated 85.5 15 0.00032 47.3 15.4 113 273-390 332-444 (815)
29 PF12333 Ipi1_N: Rix1 complex 83.2 2.2 4.7E-05 40.9 5.3 54 290-343 23-100 (102)
30 KOG2259 Uncharacterized conser 83.1 1.9 4.1E-05 52.9 5.8 91 325-422 381-472 (823)
31 KOG1525 Sister chromatid cohes 83.1 42 0.00091 45.3 18.3 155 282-459 304-474 (1266)
32 COG5218 YCG1 Chromosome conden 82.7 35 0.00075 42.0 15.7 194 165-382 64-293 (885)
33 PTZ00429 beta-adaptin; Provisi 82.5 1.6E+02 0.0035 38.0 35.7 158 253-422 33-205 (746)
34 PLN03200 cellulose synthase-in 82.0 1.6E+02 0.0034 42.1 23.5 126 288-422 498-635 (2102)
35 PF12755 Vac14_Fab1_bd: Vacuol 80.7 7.9 0.00017 36.9 8.0 69 318-389 28-96 (97)
36 KOG1240 Protein kinase contain 80.2 23 0.00049 46.7 13.9 217 182-422 501-722 (1431)
37 PF10508 Proteasom_PSMB: Prote 79.6 9.3 0.0002 46.7 10.3 99 290-390 89-190 (503)
38 KOG2025 Chromosome condensatio 79.5 25 0.00055 44.0 13.4 208 163-394 57-299 (892)
39 COG5096 Vesicle coat complex, 79.4 5.3 0.00011 50.6 8.1 99 283-390 97-196 (757)
40 TIGR02270 conserved hypothetic 78.7 9.4 0.0002 45.5 9.6 107 288-420 96-202 (410)
41 PF13513 HEAT_EZ: HEAT-like re 77.8 6.9 0.00015 32.5 6.0 55 331-387 1-55 (55)
42 KOG2259 Uncharacterized conser 77.3 6.8 0.00015 48.3 7.8 144 272-425 367-530 (823)
43 KOG1240 Protein kinase contain 75.1 18 0.00039 47.6 11.0 177 316-512 461-679 (1431)
44 KOG1949 Uncharacterized conser 75.0 10 0.00022 47.1 8.5 99 288-390 230-332 (1005)
45 PF02985 HEAT: HEAT repeat; I 72.6 4.2 9.1E-05 30.2 3.0 27 320-346 3-29 (31)
46 PF13513 HEAT_EZ: HEAT-like re 71.5 4.4 9.5E-05 33.7 3.2 53 292-344 1-55 (55)
47 PF12755 Vac14_Fab1_bd: Vacuol 70.5 8.4 0.00018 36.7 5.3 74 271-346 21-96 (97)
48 KOG2032 Uncharacterized conser 70.1 23 0.00051 42.6 9.7 135 284-419 264-410 (533)
49 PF11935 DUF3453: Domain of un 69.3 9.4 0.0002 42.1 6.1 65 325-390 1-73 (239)
50 KOG1059 Vesicle coat complex A 68.8 12 0.00026 46.7 7.2 94 270-390 273-366 (877)
51 PF02985 HEAT: HEAT repeat; I 68.7 7.7 0.00017 28.8 3.7 28 363-390 3-30 (31)
52 KOG1949 Uncharacterized conser 68.3 15 0.00032 45.8 7.8 116 188-347 216-332 (1005)
53 KOG0414 Chromosome condensatio 67.9 9.9 0.00022 49.7 6.6 127 286-422 933-1061(1251)
54 KOG1061 Vesicle coat complex A 65.4 13 0.00029 46.6 6.9 105 277-391 85-191 (734)
55 COG5096 Vesicle coat complex, 65.4 58 0.0013 41.7 12.4 151 252-418 35-188 (757)
56 TIGR02270 conserved hypothetic 64.2 41 0.00088 40.2 10.5 111 284-421 60-172 (410)
57 PF14664 RICTOR_N: Rapamycin-i 63.9 28 0.0006 41.1 8.9 87 300-390 5-98 (371)
58 COG5218 YCG1 Chromosome conden 63.2 95 0.002 38.5 12.9 109 307-418 80-192 (885)
59 KOG1293 Proteins containing ar 61.9 34 0.00074 42.5 9.2 100 290-390 429-534 (678)
60 smart00229 RasGEFN Guanine nuc 59.3 15 0.00033 35.8 4.9 50 293-342 70-124 (127)
61 KOG1020 Sister chromatid cohes 58.5 1.1E+02 0.0024 41.8 13.3 99 283-387 860-958 (1692)
62 KOG4653 Uncharacterized conser 57.4 53 0.0011 42.2 9.9 134 289-423 738-916 (982)
63 PF08389 Xpo1: Exportin 1-like 53.9 1E+02 0.0022 30.3 9.8 49 291-341 99-148 (148)
64 PF12765 Cohesin_HEAT: HEAT re 51.7 16 0.00034 29.4 2.9 41 301-341 2-42 (42)
65 PF10363 DUF2435: Protein of u 49.3 57 0.0012 30.8 6.7 61 326-390 12-73 (92)
66 KOG1851 Uncharacterized conser 48.5 96 0.0021 42.4 10.6 107 285-394 1495-1603(1710)
67 PF14584 DUF4446: Protein of u 47.7 1.4E+02 0.0029 31.0 9.7 61 228-288 19-89 (151)
68 cd03572 ENTH_epsin_related ENT 46.9 23 0.00049 35.3 3.8 47 299-347 22-68 (122)
69 KOG2149 Uncharacterized conser 46.4 92 0.002 36.9 9.1 81 307-390 48-129 (393)
70 KOG1077 Vesicle coat complex A 45.8 7.8E+02 0.017 31.7 21.1 89 294-391 130-218 (938)
71 KOG4653 Uncharacterized conser 45.1 3.4E+02 0.0073 35.4 14.1 166 216-387 788-962 (982)
72 KOG1242 Protein containing ada 43.5 6.2E+02 0.014 31.7 15.8 87 325-422 224-321 (569)
73 PF12719 Cnd3: Nuclear condens 42.3 5.5E+02 0.012 29.0 16.4 201 336-565 2-211 (298)
74 PF14664 RICTOR_N: Rapamycin-i 41.5 1.6E+02 0.0036 34.7 10.4 131 290-424 120-268 (371)
75 PF13251 DUF4042: Domain of un 41.1 50 0.0011 35.1 5.5 116 302-418 23-167 (182)
76 KOG2011 Sister chromatid cohes 40.5 76 0.0016 41.9 8.0 253 776-1035 725-985 (1048)
77 PF05402 PqqD: Coenzyme PQQ sy 39.9 46 0.00099 28.9 4.3 43 74-117 19-61 (68)
78 smart00638 LPD_N Lipoprotein N 39.2 1.9E+02 0.0041 35.8 11.1 119 291-421 410-541 (574)
79 COG1413 FOG: HEAT repeat [Ener 38.8 1.2E+02 0.0026 34.5 8.7 109 289-421 85-205 (335)
80 PF12460 MMS19_C: RNAPII trans 38.0 7.6E+02 0.017 29.4 17.5 112 271-390 187-299 (415)
81 PF08064 UME: UME (NUC010) dom 37.4 1.1E+02 0.0024 29.6 6.8 86 312-406 3-98 (107)
82 KOG1062 Vesicle coat complex A 34.3 2.8E+02 0.0061 35.8 11.1 123 224-391 17-210 (866)
83 PF05004 IFRD: Interferon-rela 33.8 7.9E+02 0.017 28.3 20.3 101 289-392 142-260 (309)
84 cd06224 REM Guanine nucleotide 33.3 24 0.00053 33.9 1.7 26 291-316 63-88 (122)
85 KOG2160 Armadillo/beta-catenin 32.8 5.3E+02 0.011 30.3 12.4 135 287-424 133-281 (342)
86 KOG2160 Armadillo/beta-catenin 32.2 4.1E+02 0.0088 31.2 11.3 99 288-390 93-197 (342)
87 COG5219 Uncharacterized conser 31.3 26 0.00055 45.0 1.7 92 288-385 56-151 (1525)
88 PF11698 V-ATPase_H_C: V-ATPas 30.9 84 0.0018 31.3 4.9 56 291-346 57-115 (119)
89 KOG1525 Sister chromatid cohes 30.5 51 0.0011 44.5 4.3 119 292-418 273-398 (1266)
90 COG5098 Chromosome condensatio 30.3 1E+02 0.0022 38.9 6.3 66 319-389 348-415 (1128)
91 PF08767 CRM1_C: CRM1 C termin 29.7 2.2E+02 0.0048 32.8 8.9 85 291-375 133-229 (319)
92 KOG1059 Vesicle coat complex A 28.5 99 0.0022 39.1 5.9 62 323-390 150-211 (877)
93 KOG1060 Vesicle coat complex A 27.8 3.9E+02 0.0084 34.6 10.7 127 287-421 152-312 (968)
94 PF14500 MMS19_N: Dos2-interac 27.7 1.9E+02 0.0041 32.5 7.6 82 320-407 2-87 (262)
95 PLN03200 cellulose synthase-in 27.6 3.3E+02 0.007 39.2 11.1 131 291-421 622-760 (2102)
96 PF11701 UNC45-central: Myosin 27.3 55 0.0012 33.7 3.1 96 288-387 15-115 (157)
97 KOG0946 ER-Golgi vesicle-tethe 26.7 2.1E+02 0.0045 36.9 8.2 51 370-420 132-190 (970)
98 PF05531 NPV_P10: Nucleopolyhe 26.6 2.7E+02 0.0058 25.6 6.9 51 226-276 12-66 (75)
99 PF08767 CRM1_C: CRM1 C termin 26.6 3E+02 0.0066 31.7 9.3 120 88-231 69-197 (319)
100 PF01347 Vitellogenin_N: Lipop 26.3 58 0.0013 40.5 3.7 116 291-421 448-585 (618)
101 COG5240 SEC21 Vesicle coat com 26.0 1.6E+02 0.0036 36.4 7.0 96 290-390 443-556 (898)
102 KOG1820 Microtubule-associated 25.3 2.3E+02 0.0051 36.9 8.7 158 252-419 269-437 (815)
103 KOG2973 Uncharacterized conser 24.3 1.9E+02 0.004 33.5 6.7 97 289-390 14-112 (353)
104 PF13251 DUF4042: Domain of un 24.1 4.5E+02 0.0098 28.0 9.3 121 270-391 21-176 (182)
105 PHA01750 hypothetical protein 23.7 2.1E+02 0.0045 25.6 5.3 46 216-267 25-71 (75)
106 PF05004 IFRD: Interferon-rela 23.6 3.7E+02 0.0079 31.0 9.2 79 319-403 45-128 (309)
107 PF11707 Npa1: Ribosome 60S bi 21.8 1.2E+03 0.026 26.9 13.0 72 326-397 167-248 (330)
108 KOG0211 Protein phosphatase 2A 21.8 2.6E+02 0.0057 36.2 8.1 59 286-344 487-545 (759)
109 PHA02567 rnh RnaseH; Provision 21.6 2E+02 0.0043 33.2 6.3 97 29-167 194-292 (304)
110 PF08569 Mo25: Mo25-like; Int 21.6 2.7E+02 0.0058 32.6 7.6 80 290-369 221-306 (335)
111 PHA03386 P10 fibrous body prot 21.4 3.4E+02 0.0075 25.9 6.7 49 225-276 12-60 (94)
112 COG1829 Predicted archaeal kin 21.1 1.5E+02 0.0033 33.5 5.2 41 923-964 201-241 (283)
113 PF10363 DUF2435: Protein of u 20.6 4.3E+02 0.0094 24.9 7.4 74 288-362 13-87 (92)
114 PRK13280 N-glycosylase/DNA lya 20.5 6.3E+02 0.014 28.7 9.9 149 566-723 3-168 (269)
115 PF04420 CHD5: CHD5-like prote 20.5 1.3E+02 0.0028 31.2 4.3 33 299-331 112-145 (161)
116 PF11853 DUF3373: Protein of u 20.4 1.3E+02 0.0029 36.6 4.9 26 355-380 105-131 (489)
117 KOG0211 Protein phosphatase 2A 20.3 4.6E+02 0.0099 34.1 9.8 133 284-419 243-378 (759)
No 1
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.9e-173 Score=1552.82 Aligned_cols=919 Identities=30% Similarity=0.477 Sum_probs=821.9
Q ss_pred cccchhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCceecCccccCCCChhHHHHHHHHHHhcCCc
Q 001623 71 QSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEV 150 (1042)
Q Consensus 71 ~~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~ 150 (1042)
..+++.||.+|+.++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|+++++..|++.|.++..
T Consensus 77 E~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es 156 (1048)
T KOG2011|consen 77 EFDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERES 156 (1048)
T ss_pred ccChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhh
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999998667
Q ss_pred cccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 001623 151 EDYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAK 228 (1042)
Q Consensus 151 ~~y~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~ 228 (1042)
+||| .++||.||+||.|||+|+.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||.||.
T Consensus 157 ~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~ 236 (1048)
T KOG2011|consen 157 GDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVAL 236 (1048)
T ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7886 567889999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHh
Q 001623 229 MLGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWIL 307 (1042)
Q Consensus 229 ~l~~~~~~~qrQleaek~K~~~-~~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~ 307 (1042)
+|+.+.+++|||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.
T Consensus 237 ~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~ 316 (1048)
T KOG2011|consen 237 NLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIK 316 (1048)
T ss_pred HHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 459999999999999999999999999999999999999999999999999999999
Q ss_pred hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Q 001623 308 SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 387 (1042)
Q Consensus 308 ~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l 387 (1042)
+||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+
T Consensus 317 ~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 317 SYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred hccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 88888888887777777
Q ss_pred Hh--cCCCCCCChhhHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcCcccCCC-CCCCCchhhHHhHHHHHHHhccCCCch
Q 001623 388 LR--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLK-GKDNDSSEVHLGRMLQILREFSADPIL 464 (1042)
Q Consensus 388 ~~--~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~f~~~~~~ 464 (1042)
.. .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++ ......+...+..++.++.++ ..+.|
T Consensus 396 ~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~ 474 (1048)
T KOG2011|consen 396 LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQH 474 (1048)
T ss_pred HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhh
Confidence 66 799999999999999999999999999999999999865433111111 111122233455566666664 34668
Q ss_pred hhhHHHhhcc-ccccCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hcCCCCCCCCCCCccchhhhhhh
Q 001623 465 SIYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEV 540 (1042)
Q Consensus 465 ~~ylVDsLwd-~~~~lkDWe~m~~~LL~d~~--~~~L~~~~e~~LieiL~asVrqa-~g~~~~~~~~~rk~~~~~~~k~~ 540 (1042)
++|+||++|+ ....++||+||.++|+.... +..+++.+++.|+|+|++++||+ .|++|+|+.+++|...+.++.+.
T Consensus 475 ~~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~ 554 (1048)
T KOG2011|consen 475 AAYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDAD 554 (1048)
T ss_pred HHHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHH
Confidence 8999999999 56789999999999998753 34789999999999999999985 59999999988888889999999
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhcccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 001623 541 FENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKA 620 (1042)
Q Consensus 541 ~~~~~~~iT~~li~~LP~LL~Ky~ad~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~~~kHsd~~VL~~~a~a 620 (1042)
+++++.++|+++++.+|+|+.||++|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+++|+++|+++
T Consensus 555 ~~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~ 634 (1048)
T KOG2011|consen 555 LEEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKP 634 (1048)
T ss_pred HHHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchh--hHHHHHhhhHhHHHHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 001623 621 IKFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIK-AVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILH 697 (1042)
Q Consensus 621 l~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~-~~~~~~~~~~ll~~L~Rl~~l~~~~~~~~~~l~~~l~~ll~ 697 (1042)
|+++|.++.. ..+++++.++.++.++..+.....+. ...++++.|+++++|+|++.|++.+++..|++|+.+...++
T Consensus 635 ~~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~ 714 (1048)
T KOG2011|consen 635 YEFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLH 714 (1048)
T ss_pred HHHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 9999998443 45788888765555555544333332 23377889999999999999999999999999999999998
Q ss_pred h--cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHH
Q 001623 698 T--FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVC 775 (1042)
Q Consensus 698 ~--~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~ 775 (1042)
. .+++|..++..+++++++.+.|.+..+..+..+.++.+..|+++++.++..|..++.-....+ .++++
T Consensus 715 e~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev--~e~~~------- 785 (1048)
T KOG2011|consen 715 ERINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEV--EEQAV------- 785 (1048)
T ss_pred hhhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHH--HHHHH-------
Confidence 6 467899999999999999999999999667778899999999999999999999997732222 24444
Q ss_pred HHHHHHHHHhhcccCCCc--ccccccccCCHHHHHHHHHH-hhhhhccCCCcchhhhhHHHHHH-hhchHHHHHHHHHHh
Q 001623 776 TILAEMWCLFRMTNFSST--KLSRLGYCPDIPVLQKFWKL-CEQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIA 851 (1042)
Q Consensus 776 ~~~~dl~~lf~~~~~~~~--~l~~L~y~p~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~e~-~~rR~~La~~cKLi~ 851 (1042)
...||++++|+.+...++ .+++++|.|+..+++.+.+| ..++|...++.. +++..+||. |+||+++|+|||||+
T Consensus 786 ~~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~ 863 (1048)
T KOG2011|consen 786 RLGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLIL 863 (1048)
T ss_pred HHHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHH
Confidence 445667778888887643 58999999999999999774 457776665433 234457887 589999999999999
Q ss_pred cCCcccccccccccccccccCCCHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHHHHH
Q 001623 852 IDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKE 930 (1042)
Q Consensus 852 ~~vv~~~~~aa~i~~~Y~k~y~d~gDIiK~tl~~~r~~~-~~~~~~~~~~L~~ly~~~~~~~~~~~~~~~~s~~f~~~ke 930 (1042)
||++||+ +|+++||||++||++||||+|+|++++|+++ .+|++++.++|+++|. .++|+
T Consensus 864 ~~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~ 923 (1048)
T KOG2011|consen 864 ENKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKE 923 (1048)
T ss_pred cccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHH
Confidence 9999995 9999999999999999999999999999997 9999999999999996 68999
Q ss_pred HHhHhhccccCchhhcchHHHHHHHHhhcccccc-------ccCcccchHHhhhhhhccCCCcccHHHHHHHHHhhccCC
Q 001623 931 LSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL-------DAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNV 1003 (1042)
Q Consensus 931 LArRfa~tf~G~d~~k~R~ai~~lHk~GI~fA~~-------~~P~nL~FLei~l~eFs~kLl~qDk~~v~~yl~~~~~~~ 1003 (1042)
||+|||++| |+|++|+|+||++|||+||.|||. .+|||+.|||| ++|||+| +|||++|++||+|+.+++
T Consensus 924 la~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~ 999 (1048)
T KOG2011|consen 924 LAKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDH 999 (1048)
T ss_pred HHHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhcccc
Confidence 999999999 999999999999999999999996 26999999999 6999999 999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHhhhh
Q 001623 1004 NMDEDPSGWRPFKSFVETLREKYT 1027 (1042)
Q Consensus 1004 ~~~~~~~~W~Pl~~yr~sL~~~~~ 1027 (1042)
+|.++ +.|.|+.+|++||.+...
T Consensus 1000 ~~~~~-~~~~p~~~~~~~l~~~~~ 1022 (1048)
T KOG2011|consen 1000 MPTSR-DPWIPLTSYLNSLEEGSQ 1022 (1048)
T ss_pred CCCCC-CCCcccccccccccccCC
Confidence 99877 999999999999998843
No 2
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.4e-46 Score=422.32 Aligned_cols=500 Identities=21% Similarity=0.254 Sum_probs=344.0
Q ss_pred hhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCceecCccccCCCCh-hHHHHHHHHHHhcCCc-cc
Q 001623 75 LSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDV-DDVVVALVNLARRGEV-ED 152 (1042)
Q Consensus 75 ~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~-~~ii~~l~e~~~~~~~-~~ 152 (1042)
+.+|--+...+...+.+...|.+.|.+|...++.+||||++.||||...|+..|+++.|. .+.+.+++--+..+.. +.
T Consensus 84 ~lff~~lldeDv~~e~lsvhwfedY~kn~~kfl~~lINf~L~ccGc~~rv~nfDVqd~dS~~eTLgqIqls~~r~k~fe~ 163 (740)
T COG5537 84 RLFFYELLDEDVIREILSVHWFEDYMKNLSKFLNSLINFDLSCCGCLTRVGNFDVQDYDSTYETLGQIQLSILRGKGFEV 163 (740)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHhccccee
Confidence 334444456777899999999999999999999999999999999999999999986664 5677777755544432 22
Q ss_pred --c-ccc--ccccchh---HHH--HHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHH
Q 001623 153 --Y-QSS--KRKELKN---FKD--NLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTS 222 (1042)
Q Consensus 153 --y-~~s--k~k~~K~---Fr~--n~~eF~~~Lv~~~~~~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~ta 222 (1042)
| +.. |.+..+. |+. -+.+|+..++. ...+|.+.+|..+++|+.+||+|++|+||||||++..-+|+-
T Consensus 164 ~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v---~~~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~ 240 (740)
T COG5537 164 VLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVV---SVGIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKK 240 (740)
T ss_pred eeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hceeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHH
Confidence 2 222 2122222 222 33344433332 346888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHH
Q 001623 223 FISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSL 302 (1042)
Q Consensus 223 Lv~va~~l~~~~~~~qrQleaek~K~~~~~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eL 302 (1042)
||..|..++ ||+++.+..++..++.. .+.+++++|+++||||||+||+|.||.+|+.+|
T Consensus 241 Lc~qa~~ls------------EKksR~ne~~l~~ln~s---------l~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L 299 (740)
T COG5537 241 LCVQAFSLS------------EKKSRMNELALYDLNPS---------LIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSL 299 (740)
T ss_pred HHHHHHHHH------------HHhhhHHHHHHHhhcch---------HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 999887554 35555444444444433 389999999999999999999999999999999
Q ss_pred HHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-cccchhHHHHHH
Q 001623 303 GVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAI 381 (1042)
Q Consensus 303 G~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~-~D~D~~V~v~AI 381 (1042)
|.|+..+|++|++..||||+||+|+|.+..||+.+++.|..|.....+...++.|.+|||.||+||+ .|+|. ||+.+|
T Consensus 300 ~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~si 378 (740)
T COG5537 300 RDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSI 378 (740)
T ss_pred HHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHH
Confidence 9999999999999999999999999999999999999999999888788899999999999999999 89999 999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHhhhcCCCHH---HHHHHHHHHHHH---HHHhhhcCcc-------cCCCCCCCCc--hhh
Q 001623 382 GLVKQLLRHQLLPDDDLGPLYDLLIDDPPE---IRRAIGELVYDH---LIAQKFNSSQ-------SGLKGKDNDS--SEV 446 (1042)
Q Consensus 382 ~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~---Vr~AAg~fv~~~---l~~~~~~~~~-------~~~~~~~~~~--~~~ 446 (1042)
++|+.++..|+|++.++..|..++||..|. .+..+.+++++. .+.++.+... +-.+|-.... .+.
T Consensus 379 k~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~ 458 (740)
T COG5537 379 KSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEE 458 (740)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHH
Confidence 999999999999999999999999998888 444555554432 2222222110 0000000000 111
Q ss_pred HHhHHHHHHH-----------------hccCCCchhhhHHHhhcc---ccccCCCh--HHHHHHHcCCCCCC------CC
Q 001623 447 HLGRMLQILR-----------------EFSADPILSIYVIDDVWE---YMKAMKDW--KCIISMLLDENPLI------DL 498 (1042)
Q Consensus 447 ~l~~l~~~l~-----------------~f~~~~~~~~ylVDsLwd---~~~~lkDW--e~m~~~LL~d~~~~------~L 498 (1042)
-..+++..+. .|....+...-.+.|+-. .......| +-+..++|.|++.. .|
T Consensus 459 iFsr~~~llk~v~ls~easvy~~t~iR~f~~ng~f~~pii~s~l~~~~i~si~~te~~Ediakl~l~dnsD~eDvn~~el 538 (740)
T COG5537 459 IFSRFVHLLKKVELSFEASVYRITEIRRFFSNGEFTCPIIKSFLISEGIGSIHPTEVKEDIAKLRLMDNSDYEDVNGYEL 538 (740)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCceechhHHHHHHHhhcccccchhHHHHHHHHHhhccCcccccccccc
Confidence 1222222221 221111111122233222 12345789 88888999887531 12
Q ss_pred Cch----h-hHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHh----cCccc
Q 001623 499 NDD----D-ATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFM----ADKAK 569 (1042)
Q Consensus 499 ~~~----~-e~~LieiL~asVrqa~g~~~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~----ad~ek 569 (1042)
.+. . .+.++=.=.++.--|... | .+ .+..|..+.-.+|.--||.|+.+|. .+|--
T Consensus 539 ~~t~np~~~~s~il~~~~~~~~~a~~n--------~-------p~-~r~~D~ve~~~~m~~~L~ali~s~~e~c~~~~~f 602 (740)
T COG5537 539 KDTANPAVLCSFILFFREKCIEFAVLN--------R-------PV-ERASDQVECFKVMYDRLSALIHSEAERCFVDPKF 602 (740)
T ss_pred ccccchHhhhhhHHHHHHHHHHHHhhC--------C-------ch-hhhhhhHHHHHHHHHHHHHHHHHHhhhccccHHH
Confidence 111 0 011111111111111111 1 11 1123444677788888999999886 46677
Q ss_pred hhHHHhhhhhcchhhhcccccchHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 001623 570 VPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVK 619 (1042)
Q Consensus 570 v~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~~~kHsd~~VL~~~a~ 619 (1042)
+..++++|--.=.+-|. -+-|+.+.+++-++|...++...---|..
T Consensus 603 i~~~~~~~de~ly~~e~----~kif~k~~ke~~difnS~~~~~~~i~~~~ 648 (740)
T COG5537 603 IISLFKLVDEGLYTDES----NKIFKKCGKELIDIFNSRSKSRMNIVSGY 648 (740)
T ss_pred HHHHHhhhHhhchhhHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777554332222 24577777777778888887665554443
No 3
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=99.96 E-value=1.5e-29 Score=245.04 Aligned_cols=113 Identities=40% Similarity=0.659 Sum_probs=104.9
Q ss_pred cccc-ccccccchhHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 001623 151 EDYQ-SSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKM 229 (1042)
Q Consensus 151 ~~y~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~ 229 (1042)
++|| ++|+|.||+||+||++||+.||..|++++|||++||+++++||++||+|++||||||||++||+|+|+||+|+.+
T Consensus 4 ~~YPli~k~~~~k~Fr~~~~~F~~~lv~~~~~~~Lyd~~l~~~l~~wl~~lS~S~~R~fRhTaT~~~l~i~t~L~~v~~~ 83 (118)
T PF08514_consen 4 SDYPLISKGKKFKKFRKNFCEFFDQLVEQCHSSILYDDYLMDNLISWLTALSSSKVRPFRHTATLAALKIMTSLCDVAKS 83 (118)
T ss_pred ccCCCcCCCcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHHHHH
Confidence 4564 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcccC-CCccHHHHHHHHHH
Q 001623 230 LGAQRETTQRQLNAEKKKRV-EGPRVESLNKRLSM 263 (1042)
Q Consensus 230 l~~~~~~~qrQleaek~K~~-~~~r~e~l~~~~~e 263 (1042)
+..+++++||||++|++|++ +++|+++|+++++|
T Consensus 84 l~~~~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~~ 118 (118)
T PF08514_consen 84 LSEELEKTQRQLEAEKKKKRKNKSRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcC
Confidence 99999999999999988765 45689988887654
No 4
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.05 E-value=0.0028 Score=66.27 Aligned_cols=93 Identities=29% Similarity=0.428 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhcc
Q 001623 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELAD 370 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~ 370 (1042)
+|.||.-++..+|.....||... +.|+.++.=.|+|+++.||..|+..|..|..++-...+ +.+.. +++....
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~~l~~----~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-GQLFS----RILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-hhhhH----HHHHHHc
Confidence 68999999999999999999765 67999999999999999999999999999975322111 22212 4444458
Q ss_pred ccchhHHHHHHHHHHHHHhc
Q 001623 371 DIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 371 D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
|.|++|+..|..++..+.+.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988888876
No 5
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=96.26 E-value=0.0044 Score=73.79 Aligned_cols=128 Identities=26% Similarity=0.462 Sum_probs=84.8
Q ss_pred HHHHhhhcceEeccccCC--ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHH--HHHHHHHHhhhhcC
Q 001623 273 DMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVR--KSSVLALQNLYEVD 348 (1042)
Q Consensus 273 ~~i~~iF~~VFvhRyRDv--~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR--~~~L~aL~~Ly~~~ 348 (1042)
++...+++..|-.|.||+ +-.||..|++-...|-..- ..|=+.-|+.|+||.+++++..+| --.......++..
T Consensus 162 e~~lyly~eNfK~~~rd~~~~F~~~~llveFvs~~~v~~-~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~- 239 (740)
T COG5537 162 EVVLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVVSV-GIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQK- 239 (740)
T ss_pred eeeeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-eeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHH-
Confidence 455667778888888888 5689999999999998776 444456789999999999999998 2222222222210
Q ss_pred CCcccHHHH-HHHHHHHHhhhc-cccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhc-----CCCHHHHHHHHHHHH
Q 001623 349 DNVPTLGLF-TERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLI-----DDPPEIRRAIGELVY 421 (1042)
Q Consensus 349 ~~~~~L~~F-t~RFk~RlveM~-~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvf-----d~~~~Vr~AAg~fv~ 421 (1042)
. -....| .+++|.|+.+.+ .|-.++. ++ +.++.++..+| |-++.||..+..-++
T Consensus 240 -~-Lc~qa~~lsEKksR~ne~~l~~ln~sl-------~~----------d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~ 300 (740)
T COG5537 240 -K-LCVQAFSLSEKKSRMNELALYDLNPSL-------IR----------DEIKDICDSVFVSRYIDVDDVIRVLCSMSLR 300 (740)
T ss_pred -H-HHHHHHHHHHHhhhHHHHHHHhhcchH-------HH----------HHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 0 012345 788999999999 5666655 11 12334444444 667778877765443
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.24 E-value=0.34 Score=58.44 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=100.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM 368 (1042)
|-.|.+|...+..+..-...+|+.+-.. ++..+..+|.|+++.|+..++..+..+ +.++.. ...+...+-.+|..+
T Consensus 125 ~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~--~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 125 DPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS--YKSLIPKLIRILCQL 200 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH--HTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch--hhhhHHHHHHHhhhc
Confidence 6789999999999999999999988666 999999999999999999999999999 322111 115666666788888
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCC---CChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 369 ADDIDVSVAVCAIGLVKQLLRHQLLPD---DDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 369 ~~D~D~~V~v~AI~Ll~~l~~~~~L~~---~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
..+.++-+.+.+++++..+.....-.+ .-+..+..++.+.++.|.-+|..++.
T Consensus 201 l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 201 LSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 788999999999998876655432222 12356666677888888888888766
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.09 E-value=0.15 Score=53.36 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCCh--hhHHhhhcC
Q 001623 330 SASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDL--GPLYDLLID 407 (1042)
Q Consensus 330 ~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~--~~V~~Lvfd 407 (1042)
++.||..++-+|..|.-. -..+.+++-+.|..+-.|.|+.||..|+.+++.|...|++-.++. ..+..++-|
T Consensus 1 ~~~vR~n~i~~l~DL~~r------~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR------YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHh------CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC
Confidence 578999999999988642 224566677788888899999999999999999999998876654 577788899
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCCCchhhHHhHHHHHHHhccCCCchhhhHHHhhccccccCCChHHHHH
Q 001623 408 DPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIIS 487 (1042)
Q Consensus 408 ~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~~~~lkDWe~m~~ 487 (1042)
+++.||..|..|+.+-.... .+ ..-...+.+++..+.....+..| ....-.+-..+..
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~--------------~~-~~i~~~~~e~i~~l~~~~~~~~~-------~~~~~~~~~~I~~ 132 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKR--------------NP-NIIYNNFPELISSLNNCYEHPVY-------GPLSREKRKKIYK 132 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhc--------------cc-hHHHHHHHHHHHHHhCccccccc-------cccCHHHHHHHHH
Confidence 99999999999987632210 00 11123455666655544333333 0011234445555
Q ss_pred HHcCCCCCCCCC-chhhHHHHHHHHHHHHHH
Q 001623 488 MLLDENPLIDLN-DDDATNLIRLLSASVKKA 517 (1042)
Q Consensus 488 ~LL~d~~~~~L~-~~~e~~LieiL~asVrqa 517 (1042)
+|+. -++ +++.-.|++=|+.-+..+
T Consensus 133 fll~-----~i~~d~~~~~l~~kl~~~~~~~ 158 (178)
T PF12717_consen 133 FLLD-----FIDKDKQKESLVEKLCQRFLNA 158 (178)
T ss_pred HHHH-----HcCcHHHHHHHHHHHHHHHHHH
Confidence 5553 233 555666666666555444
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.69 E-value=0.29 Score=52.67 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC-CcccH--HHHH
Q 001623 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD-NVPTL--GLFT 358 (1042)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L--~~Ft 358 (1042)
..+.|.-|.-.-||..+...|..++...| +...-.+.++.-.+.+|++.||..|+.-|..+...-. ..+.+ ..++
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 45577888888999999999999999888 3333347889999999999999999999999886432 22333 3356
Q ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 359 ERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 359 ~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
..+.+-|+.+..|.+++||..|-+++..+.++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999999776
No 9
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.10 E-value=0.11 Score=46.94 Aligned_cols=77 Identities=26% Similarity=0.258 Sum_probs=61.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlve 367 (1042)
.|-+|.+|...+..|| .+-++.-+.+|-.+|.|+++.||..++.+|..+- +.+-.+.|++
T Consensus 10 ~~~~~~vr~~a~~~L~--------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~ 69 (88)
T PF13646_consen 10 NDPDPQVRAEAARALG--------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG------------DPEAIPALIK 69 (88)
T ss_dssp TSSSHHHHHHHHHHHH--------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHH
Confidence 6889999999999999 2234466899999999999999999999999872 3446667888
Q ss_pred hc-cccchhHHHHHHHHH
Q 001623 368 LA-DDIDVSVAVCAIGLV 384 (1042)
Q Consensus 368 M~-~D~D~~V~v~AI~Ll 384 (1042)
|. .|.+..|+..|+.-|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 88 567778899888765
No 10
>PRK09687 putative lyase; Provisional
Probab=94.73 E-value=0.13 Score=58.01 Aligned_cols=118 Identities=20% Similarity=0.109 Sum_probs=84.4
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001623 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1042)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlv 366 (1042)
..|-+|.+|...+..||.- ....... ....+.-+.-+++|+++.||..++.+|.++= +++ =-+-|+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~-~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~~~-----------ai~~L~ 165 (280)
T PRK09687 100 LEDKSACVRASAINATGHR-CKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-DEA-----------AIPLLI 165 (280)
T ss_pred hcCCCHHHHHHHHHHHhcc-ccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-CHH-----------HHHHHH
Confidence 4899999999999999952 1111001 2233445667789999999999999996552 222 224677
Q ss_pred hhccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 367 eM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
.+..|.|+.||..|+.-|..+ +.=+++=.+.+..++-|.++.||.+|+..+-
T Consensus 166 ~~L~d~~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 777899999999999988877 2214444567888888999999999988764
No 11
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.04 E-value=0.27 Score=63.98 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNL 344 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 344 (1042)
|-+|.+|..+++.||.+- .+..+.-|--.|.|++..||..++.+|..+
T Consensus 632 D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred CCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 555555555555555331 223334444445555555555555555444
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.89 E-value=0.19 Score=65.34 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=86.9
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001623 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1042)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~ 363 (1042)
...-.|-+|+||......||.==...+ .-+..+.-++.|.++.||..++.+|..+-..+... .
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~-----------~ 810 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDV-----------A 810 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhH-----------H
Confidence 457889999999999999984211111 12455667789999999999999999886432211 3
Q ss_pred HHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHHHH
Q 001623 364 RMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 364 RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
.++.+..|.|+.||..|++.|..+- +++-...+..++-|+++.||++|+.-+-.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~-----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA-----ADVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc-----ccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4667778999999999999886542 34445788888889999999999987654
No 13
>PRK09687 putative lyase; Provisional
Probab=93.85 E-value=0.3 Score=54.98 Aligned_cols=119 Identities=19% Similarity=0.113 Sum_probs=70.3
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlve 367 (1042)
|-+|.+|...+..||. |..-+.. .+..+..|. +.++|+++.||..++.+|-.+...... . ..++..-+..
T Consensus 65 ~~d~~vR~~A~~aLg~-lg~~~~~--~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~-----~~~a~~~l~~ 135 (280)
T PRK09687 65 SKNPIERDIGADILSQ-LGMAKRC--QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-Y-----SPKIVEQSQI 135 (280)
T ss_pred CCCHHHHHHHHHHHHh-cCCCccc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-c-----chHHHHHHHH
Confidence 5677777777777775 2111110 223455555 457778888888877777776322110 1 2234444556
Q ss_pred hccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 368 M~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
...|.|..||..|+.-|..+- +++=++.+..++-|.++.||.+|+.-+-
T Consensus 136 ~~~D~~~~VR~~a~~aLg~~~-----~~~ai~~L~~~L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSVIN-----DEAAIPLLINLLKDPNGDVRNWAAFALN 184 (280)
T ss_pred HhhCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 667777778777777664321 2334556667777777777777776654
No 14
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.69 E-value=0.33 Score=63.71 Aligned_cols=139 Identities=21% Similarity=0.314 Sum_probs=108.1
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhH--HHHHHHHHHhhh-------hc--CC-
Q 001623 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASV--RKSSVLALQNLY-------EV--DD- 349 (1042)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~V--R~~~L~aL~~Ly-------~~--~~- 349 (1042)
.|..|+.| -+||.--+..||.....+|.+|....-++-+.-.|+|.+..+ +..|++.+.-.. ++ .+
T Consensus 1231 ~~f~k~~~--~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w 1308 (1692)
T KOG1020|consen 1231 MYFSKDKD--GELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNW 1308 (1692)
T ss_pred HHHHHhhh--hHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 35567777 999999999999999999999999999999999999977665 566666655433 00 00
Q ss_pred -----------C---------cccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhh-HHhhhcCC
Q 001623 350 -----------N---------VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGP-LYDLLIDD 408 (1042)
Q Consensus 350 -----------~---------~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~-V~~Lvfd~ 408 (1042)
+ .+.+.--.++|-+.|++-|.|.|..||..||+++..+++.|+..|-.|-+ +..|--|.
T Consensus 1309 ~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1309 TKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred hhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 0 01123367799999999999999999999999999999999999987753 34444477
Q ss_pred CHHHHHHHHHHHHH
Q 001623 409 PPEIRRAIGELVYD 422 (1042)
Q Consensus 409 ~~~Vr~AAg~fv~~ 422 (1042)
.+.+|+-|-.++.+
T Consensus 1389 ~~~~r~~Ad~LL~e 1402 (1692)
T KOG1020|consen 1389 SQAIRHVADELLKE 1402 (1692)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777543
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=93.00 E-value=0.23 Score=62.95 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=76.1
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccHHHHHHHHH
Q 001623 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTLGLFTERFS 362 (1042)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L~~Ft~RFk 362 (1042)
.+-..|-+|-||+..+..||.- ..|+ +-+.-+..+.-.|.|+++-||.+++-++.++|... +... -.+|.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~I--r~~~--i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-----~~~~~ 181 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCI--RVSS--VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-----QQDFK 181 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcC--CcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-----ccchH
Confidence 3445688999999999999952 2222 11233566788899999999999999999999743 3221 12466
Q ss_pred HHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 363 ~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
++|.+|..|.|+.|...|+.++..|.+.+
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 78888889999999999999999998764
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.59 E-value=0.45 Score=44.75 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHHHhh---CccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHH
Q 001623 289 DIDPNIRMSCIQSLGVWILS---YPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNR 364 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~---yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft-~RFk~R 364 (1042)
|-++++|..++..|+.-... +...|++...+.++--.|+|+++.||..++.+|..|-.+.. .....+. .-+-+.
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l~~ 95 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLEAGGVPK 95 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHHCCChHH
Confidence 33489999999999986643 45678888999999999999999999999999999976542 2222222 336778
Q ss_pred HhhhccccchhHHHHHHHHHHHHH
Q 001623 365 MIELADDIDVSVAVCAIGLVKQLL 388 (1042)
Q Consensus 365 lveM~~D~D~~V~v~AI~Ll~~l~ 388 (1042)
+++...+.|.+|+..|+.++..|.
T Consensus 96 l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 96 LVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888888889999999999988764
No 17
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.31 E-value=0.57 Score=60.37 Aligned_cols=171 Identities=23% Similarity=0.355 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhccCCccc-hHhHHHHHHHhHhcCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001623 167 NLVSFWDNLVVECQNGPLFD-KVLFDKCMDYIIALSCTPPR----VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQL 241 (1042)
Q Consensus 167 n~~eF~~~Lv~~~~~~~LyD-~~lmd~l~~wL~~LS~S~vR----~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQl 241 (1042)
++.+++.. .|..-.+|. ..+|..+..++.-.+..+.+ -++|+||++--++|.-=.+ ..
T Consensus 896 d~~d~i~~---icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fc---------- 958 (1251)
T KOG0414|consen 896 DLADLISG---ICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FC---------- 958 (1251)
T ss_pred hHHHHHHH---HHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HH----------
Confidence 34444433 355566776 67999999999877654443 3899999998888732111 00
Q ss_pred HHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhh
Q 001623 242 NAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKY 321 (1042)
Q Consensus 242 eaek~K~~~~~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKY 321 (1042)
+++...+-.+|+. =-.|-||+-|+-+||..-..||..+ +.+--|
T Consensus 959 -----------------------es~l~llftimek-----------sp~p~IRsN~VvalgDlav~fpnli--e~~T~~ 1002 (1251)
T KOG0414|consen 959 -----------------------ESHLPLLFTIMEK-----------SPSPRIRSNLVVALGDLAVRFPNLI--EPWTEH 1002 (1251)
T ss_pred -----------------------HHHHHHHHHHHhc-----------CCCceeeecchheccchhhhccccc--chhhHH
Confidence 1111122222221 1368899999999999999999977 557789
Q ss_pred hhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---cccchhHHHHHHHHHHHHHhcCCCCCCCh
Q 001623 322 LGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAIGLVKQLLRHQLLPDDDL 398 (1042)
Q Consensus 322 lGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~---~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~ 398 (1042)
+.-.|.|.++.||..|+..|..|.-++ .+ |-|..+-+|| -|-+.+++-.|=.....|...|
T Consensus 1003 Ly~rL~D~~~~vRkta~lvlshLILnd-mi--------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~------- 1066 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLILND-MI--------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG------- 1066 (1251)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhh-hh--------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-------
Confidence 999999999999999999999998654 21 3677888998 4999999999998888888876
Q ss_pred hhHHhhhc
Q 001623 399 GPLYDLLI 406 (1042)
Q Consensus 399 ~~V~~Lvf 406 (1042)
+.||.|+.
T Consensus 1067 n~iynlLP 1074 (1251)
T KOG0414|consen 1067 NTIYNLLP 1074 (1251)
T ss_pred cchhhhch
Confidence 25555554
No 18
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.17 E-value=0.38 Score=50.88 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChh-hHHhhhcCCCHHHHHHHHHHHH
Q 001623 357 FTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLG-PLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 357 Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~-~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
-.+||-++|+++|.+.|..||..|++++..+.+.|+..|.+|- .+..|.-|.++.||+.|-..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~ 70 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999885 5667888999999999987643
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.91 E-value=0.36 Score=43.55 Aligned_cols=76 Identities=29% Similarity=0.302 Sum_probs=58.1
Q ss_pred cCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhh
Q 001623 326 LNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLL 405 (1042)
Q Consensus 326 L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lv 405 (1042)
.+|+++.||..++..|..+-. .+.-+.|+++..|.|+.|+..|+.-|..+- +++-++.+.+++
T Consensus 9 ~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----~~~~~~~L~~~l 71 (88)
T PF13646_consen 9 QNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIG-----DPEAIPALIKLL 71 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----HHHTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 389999999999999995532 146778889999999999999999888763 344566777777
Q ss_pred cCC-CHHHHHHHHH
Q 001623 406 IDD-PPEIRRAIGE 418 (1042)
Q Consensus 406 fd~-~~~Vr~AAg~ 418 (1042)
.++ +..||.+|..
T Consensus 72 ~~~~~~~vr~~a~~ 85 (88)
T PF13646_consen 72 QDDDDEVVREAAAE 85 (88)
T ss_dssp TC-SSHHHHHHHHH
T ss_pred cCCCcHHHHHHHHh
Confidence 664 5566777764
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.11 E-value=1 Score=42.21 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=78.1
Q ss_pred cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH-HHHHHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 313 FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE-RFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 313 FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~-RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
|.+...+.++--.|.|.+..+|..++.+|..+....+ .....|.+ ..-+.++++..|.|+.|+..|+..+..|...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4455677888888999999999999999999987521 22333333 67788888888899999999999999998764
Q ss_pred ------CCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 392 ------LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 392 ------~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
+....-+..+.+++-+.+..++..|..++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112223445556666677777777766654
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.71 E-value=1.6 Score=46.90 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=46.7
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc---ccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYP---SFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP---~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1042)
.+=.|.+|..|++.|..++..+| ..+-. +.+.+.+.=+|+|.+++||..+-+.+..+|+.
T Consensus 141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 141 KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999999 33333 45889999999999999999999999999863
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.54 E-value=2.8 Score=51.10 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHH-HHHHHHHhhhc
Q 001623 291 DPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFT-ERFSNRMIELA 369 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft-~RFk~RlveM~ 369 (1042)
.++.=..|+.-|+.++...+-..+.++|..+|--.|.-+++.||.-++++|.++-.+++. ...... .-.-+.++...
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~--~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG--AAQLLVDNELLPLIIQCL 128 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--HHHHhcCccHHHHHHHHH
Confidence 556667888999999999988888999999999999999999999999999998765432 222221 12344677777
Q ss_pred cccchhHHHHHHHHHHHHHhc
Q 001623 370 DDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 370 ~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.|.|.+|+..|++++..|.++
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCC
Confidence 899999999999999999886
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.43 E-value=2.3 Score=47.35 Aligned_cols=94 Identities=24% Similarity=0.358 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001623 290 IDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlv 366 (1042)
-||.|+..++-.+|. ...||. ..-+-.=+.-+|-+|+|+++.||..++.+|..+-.+.++...++.+.. .++
T Consensus 25 ~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~----~Vc 99 (254)
T PF04826_consen 25 EDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP----QVC 99 (254)
T ss_pred CChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH----HHH
Confidence 479999999999998 466664 233557788999999999999999999999999877777777776655 555
Q ss_pred hhc--cccchhHHHHHHHHHHHHH
Q 001623 367 ELA--DDIDVSVAVCAIGLVKQLL 388 (1042)
Q Consensus 367 eM~--~D~D~~V~v~AI~Ll~~l~ 388 (1042)
+.+ ...|..|...+.++|+.|.
T Consensus 100 ~~~~s~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 100 EETVSSPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred HHHhcCCCCCHHHHHHHHHHHccC
Confidence 543 4568888899999888874
No 24
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.02 E-value=18 Score=45.23 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=90.8
Q ss_pred HHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCcccccc----chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 001623 275 MRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ----DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN 350 (1042)
Q Consensus 275 i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~----d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~ 350 (1042)
+....+.+.+---|-..|+ | .++-+...+...|+.=.. +..++|+--..--|+..||..|++.|..|-.+.
T Consensus 42 flr~vn~il~vkKresi~d-R--Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-- 116 (892)
T KOG2025|consen 42 FLRVVNYILLVKKRESIPD-R--ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-- 116 (892)
T ss_pred HHHHHHHheeeccCCCcHH-H--HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc--
Confidence 3333343444444555554 2 345566666666655444 345677777888899999999999999998632
Q ss_pred cccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhH--Hhhh--cCCCHHHHHHHHH
Q 001623 351 VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL--YDLL--IDDPPEIRRAIGE 418 (1042)
Q Consensus 351 ~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V--~~Lv--fd~~~~Vr~AAg~ 418 (1042)
..-=+.-.+.....|.+-..|.++.||.+|+-.|+.+.... -+++|+-+ +.-+ .|.++.||+||-.
T Consensus 117 ~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~--~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 117 AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP--KDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 11112344556777777778999999999999999888653 34455433 3222 2999999999963
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=1.4 Score=54.04 Aligned_cols=101 Identities=29% Similarity=0.365 Sum_probs=84.8
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccc--cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHHHHHHHHH
Q 001623 287 YRDIDPNIRMSCIQSLGVWILSYPSFFL--QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLGLFTERFS 362 (1042)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL--~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~~Ft~RFk 362 (1042)
|+--.|.||+.-+..+...|..-++.+. =|+||--+.-.=+|.+++||..+=++|.-|.+. +...+.|+.-.+
T Consensus 183 ~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive--- 259 (885)
T KOG2023|consen 183 FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE--- 259 (885)
T ss_pred HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH---
Confidence 4445999999999999999988887665 489999999999999999999999999999865 345566766555
Q ss_pred HHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 363 ~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
=|+.-+.|.|.+|+.+|......+-+..
T Consensus 260 -yML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 260 -YMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred -HHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 4666778999999999999998888765
No 26
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.85 E-value=5.2 Score=45.31 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred hcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh---cCCCcccH-
Q 001623 279 FTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE---VDDNVPTL- 354 (1042)
Q Consensus 279 F~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~---~~~~~~~L- 354 (1042)
++++.+.=.+=.+|.||...++.||.--...+..- ..|+.-|+-.+......||..++++|-.+.- .+-....-
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 33334444455788999999999998877777433 4578888888866699999999999988852 21111111
Q ss_pred ---HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCC-CC-hhhHHhhhcC----CCHHHHHHHHHHH
Q 001623 355 ---GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD-DD-LGPLYDLLID----DPPEIRRAIGELV 420 (1042)
Q Consensus 355 ---~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~-~d-~~~V~~Lvfd----~~~~Vr~AAg~fv 420 (1042)
......+-+-+.....+.+.+++..|++-+..|+=+|.+.+ .+ +..+.-+.|+ ++.++|+.-+-|+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 12333444445555555588899999999999999998887 33 2344444442 3456666666664
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.71 E-value=20 Score=43.21 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=74.4
Q ss_pred CCChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlve 367 (1042)
--.|+++..|+--||.+....+. . .-..+++++.+...+.++.||...+.++.++|....... . .....+.+..
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~-~---~~~i~~~~~~ 500 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE-V---QNEILQFLLS 500 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT-H---HHHHHHHHHC
T ss_pred hhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh-h---HHHHHHHHHH
Confidence 56788999999999988777665 4 445789999999999999999999999999997543211 1 1145556667
Q ss_pred hcc--ccchhHHHHHHHHHHHHHh
Q 001623 368 LAD--DIDVSVAVCAIGLVKQLLR 389 (1042)
Q Consensus 368 M~~--D~D~~V~v~AI~Ll~~l~~ 389 (1042)
++. |.|++|+..|...+..|..
T Consensus 501 ~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 501 LATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHcc
Confidence 776 7899999999998887754
No 28
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.48 E-value=15 Score=47.35 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=88.5
Q ss_pred HHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001623 273 DMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 352 (1042)
Q Consensus 273 ~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 352 (1042)
.+...+|. .|.+|..|.-++.|-.=+..+-.|..+||-.+ +.++++-+|.++++..|.+|...+.+.+..-+...
T Consensus 332 ~~~~~v~p-~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~----~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 332 KYAKNVFP-SLLDRLKEKKSELRDALLKALDAILNSTPLSK----MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHHhhcc-hHHHHhhhccHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 34444443 46689999999999988888888888888765 77999999999999999999999999997543211
Q ss_pred cHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 353 TLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 353 ~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
--+.=...-++=++.+..|.|.+||..|.+.+..+.++
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 12222344556777888899999999999999888886
No 29
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.23 E-value=2.2 Score=40.90 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHhhCcccccc-------chhhhhhhhhcCC-----------------CChhHHHHHHHHHHh
Q 001623 290 IDPNIRMSCIQSLGVWILSYPSFFLQ-------DLYLKYLGWTLND-----------------KSASVRKSSVLALQN 343 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~FL~-------d~YLKYlGW~L~D-----------------k~~~VR~~~L~aL~~ 343 (1042)
+.|+||...+.-|..++..||+..+. +.|+..+||.... ++...|...|.+|.+
T Consensus 23 i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~~~~~~~s~s~~~~~~~~~~~~~~k~r~~~L~~L~~ 100 (102)
T PF12333_consen 23 ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWSTQSSNRSSSVASSSSSSSKKKSKKWRLKVLQRLAK 100 (102)
T ss_pred CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCCccCCCcceeeeccccccccccCHHHHHHHHHHHHH
Confidence 56999999999999999999999332 5899999999422 566667777776654
No 30
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=1.9 Score=52.86 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=78.1
Q ss_pred hcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHh
Q 001623 325 TLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYD 403 (1042)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~ 403 (1042)
.|-|.--+||.+++-++..|--+ |.+ -.+=-+=||.|-+|-...||..||.-|+.|..++.|.++..+.+..
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~ssP~F-------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~ 453 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATSSPGF-------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILE 453 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHH
Confidence 57777889999999999999643 433 3344455889999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHH
Q 001623 404 LLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 404 Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
-+=|.++.||.++-+++..
T Consensus 454 ~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 31
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.07 E-value=42 Score=45.33 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=92.9
Q ss_pred eEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001623 282 LFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1042)
Q Consensus 282 VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RF 361 (1042)
.|..|+-|..+++|..|++...+-+.+.|+.=-+-.-+-++---+.|.+-.||..++ +..+ ...-|.--+
T Consensus 304 ~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~--i~~~--------~v~~~~l~~ 373 (1266)
T KOG1525|consen 304 AFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVV--IVAC--------DVMKFKLVY 373 (1266)
T ss_pred HHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEE--EEEe--------ehhHhhhhh
Confidence 578999999999999999999999988888776655555555545554444444333 1111 111122222
Q ss_pred HHHH----hhhccccchhHHHHHHHHHHHHHhc--C-------CCCCC-C--hhhHHhhhcCCCHHHHHHHHHHHHHHHH
Q 001623 362 SNRM----IELADDIDVSVAVCAIGLVKQLLRH--Q-------LLPDD-D--LGPLYDLLIDDPPEIRRAIGELVYDHLI 425 (1042)
Q Consensus 362 k~Rl----veM~~D~D~~V~v~AI~Ll~~l~~~--~-------~L~~~-d--~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~ 425 (1042)
-+-+ -|-++|+=..||.+||+=++.++++ . .+++. + -+.++.++|...-..| ++.+.++
T Consensus 374 ~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-----~~vE~il 448 (1266)
T KOG1525|consen 374 IPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-----LLVERIL 448 (1266)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH-----HHHHHHH
Confidence 2212 2334699999999999999999995 1 11111 1 2478888888766666 3333333
Q ss_pred HhhhcCcccCCCCCCCCchhhHHhHHHHHHHhcc
Q 001623 426 AQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFS 459 (1042)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~ 459 (1042)
+.-. .+. ..+.+..++++++.|..|.
T Consensus 449 ~~~L-~P~-------~l~~q~Rmk~l~~~l~~~D 474 (1266)
T KOG1525|consen 449 AEYL-VPY-------PLSTQERMKHLYQLLAGLD 474 (1266)
T ss_pred HHhh-CCC-------CCCHHHHHHHHHHHHhccc
Confidence 3211 010 1122345667777776664
No 32
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.74 E-value=35 Score=42.02 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHH------
Q 001623 165 KDNLVSFWDNLVVEC-QNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETT------ 237 (1042)
Q Consensus 165 r~n~~eF~~~Lv~~~-~~~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~------ 237 (1042)
-..+..|+.+++.-- +..+ -...+.+.++-.+.--.+|+-...|.-+ ++|..-++++.+.+...+-|.
T Consensus 64 ~dRil~fl~~f~~Y~~~~dp-eg~~~V~~~~~h~lRg~eskdk~VR~r~----lqila~~~d~v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDP-EGEELVAGTFYHLLRGTESKDKKVRKRS----LQILALLSDVVREIDEVLANGLLEKLS 138 (885)
T ss_pred HHHHHHHHHHHHHhcCCCCh-hhhHHHHHHHHHHHhcccCcchhHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 345666777776522 1111 0024566666777777788888888654 666666677777777665552
Q ss_pred HHHHHHHHcccCCCccHHHHH--HHHHHHHh-hHHHHHHH------------------HHhhh----cceEeccccCCCh
Q 001623 238 QRQLNAEKKKRVEGPRVESLN--KRLSMTHK-NITDLEDM------------------MRKIF----TGLFVHRYRDIDP 292 (1042)
Q Consensus 238 qrQleaek~K~~~~~r~e~l~--~~~~e~~~-~~~~i~~~------------------i~~iF----~~VFvhRyRDv~p 292 (1042)
.|-++.|+. -|.+++. .+.++.+. ....+.++ +|-.. -+..+.|-|||+.
T Consensus 139 ~R~~DRE~~-----VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~ 213 (885)
T COG5218 139 ERLFDREKA-----VRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSG 213 (885)
T ss_pred HHHhcchHH-----HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhH
Confidence 344444432 2333331 11111111 11111122 22222 2567899999999
Q ss_pred hHHHHHHHHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc--
Q 001623 293 NIRMSCIQSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-- 369 (1042)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~-- 369 (1042)
-+|...-+.+---|- .-.|+ .+.....+.|.|.|..-.||.+|..+|..-|.++... |+|++.
T Consensus 214 anRr~vY~r~Lp~iG--d~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~------------~lveLle~ 279 (885)
T COG5218 214 ANRRMVYERCLPRIG--DLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDL------------RLVELLEF 279 (885)
T ss_pred HHHHHHHHHHhhhhc--chhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccc------------cHHHHHHH
Confidence 999874443321111 11344 2455668999999999999999999999999876443 455544
Q ss_pred cccc-hhHHHHHHH
Q 001623 370 DDID-VSVAVCAIG 382 (1042)
Q Consensus 370 ~D~D-~~V~v~AI~ 382 (1042)
+|+. ..|.|.||+
T Consensus 280 lDvSr~sv~v~aik 293 (885)
T COG5218 280 LDVSRRSVLVAAIK 293 (885)
T ss_pred HhhhhHHHHHHHHH
Confidence 3432 347777776
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=82.46 E-value=1.6e+02 Score=37.99 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=105.7
Q ss_pred cHHHHHHHHHH--HHhhHHHHHHHHHhhhcceEeccc--------cCCChhHHHHHHHHHHHHHhhCcc-cccc-chhhh
Q 001623 253 RVESLNKRLSM--THKNITDLEDMMRKIFTGLFVHRY--------RDIDPNIRMSCIQSLGVWILSYPS-FFLQ-DLYLK 320 (1042)
Q Consensus 253 r~e~l~~~~~e--~~~~~~~i~~~i~~iF~~VFvhRy--------RDv~p~IR~~Ci~eLG~Wi~~yP~-~FL~-d~YLK 320 (1042)
.+..|.+.+.. ..++++.++.++..+-.|.=+..+ .=-+.++|.+|--.|...-...|+ .+|- ++..|
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~K 112 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQ 112 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHH
Confidence 45666666643 345677777777777666211111 012568888888888877777787 4442 33334
Q ss_pred hhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc--CCCC-CCC
Q 001623 321 YLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLP-DDD 397 (1042)
Q Consensus 321 YlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~--~~L~-~~d 397 (1042)
-|.|+++.+|--+|+.|..+=. +. +.+-.-.-+.....|.++-||-.|+--+..|++. ++.. .+-
T Consensus 113 ----Dl~d~Np~IRaLALRtLs~Ir~-----~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~ 180 (746)
T PTZ00429 113 ----DTTNSSPVVRALAVRTMMCIRV-----SS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF 180 (746)
T ss_pred ----HcCCCCHHHHHHHHHHHHcCCc-----HH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch
Confidence 5789999999999999988732 22 2222222233334799999999998888888875 3333 234
Q ss_pred hhhHHhhhcCCCHHHHHHHHHHHHH
Q 001623 398 LGPLYDLLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 398 ~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
++.+..++-|.++.|...|...+++
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHH
Confidence 6789999999999998888877665
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.00 E-value=1.6e+02 Score=42.14 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=96.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~R 364 (1042)
+.-+++||..++..||.=-..- .....+..-+..|-+.|.+.+..++..++.+|..|-...+. ..+ +.
T Consensus 498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I--------~~ 568 (2102)
T PLN03200 498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATI--------SQ 568 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHH--------HH
Confidence 3447899999988888654422 22444668899999999999999999999999999765433 122 56
Q ss_pred HhhhccccchhHHHHHHHHHHHHHhc---------CCCCCCChhhHHhhhcCCCHHHHHHHHHHHHH
Q 001623 365 MIELADDIDVSVAVCAIGLVKQLLRH---------QLLPDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 365 lveM~~D~D~~V~v~AI~Ll~~l~~~---------~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
+++|-...|..+...+++.+..|... |..++.-++.+.+|+-+.++.+++.|+..+.+
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD 635 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888777788888899988777653 23345667899999999999999999976643
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=80.66 E-value=7.9 Score=36.85 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=50.1
Q ss_pred hhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHh
Q 001623 318 YLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR 389 (1042)
Q Consensus 318 YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~ 389 (1042)
-++-+--.+.|++..||..+..+|..+-+.-. ..-+..|.+ .-+-|...+.|.|.+|+..| .+|..+++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~-IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNE-IFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 45666678999999999999999999976421 122444555 33466777789999999888 66666654
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=80.19 E-value=23 Score=46.74 Aligned_cols=217 Identities=19% Similarity=0.136 Sum_probs=136.2
Q ss_pred CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCc-cHHHHHHH
Q 001623 182 GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKR 260 (1042)
Q Consensus 182 ~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaek~K~~~~~-r~e~l~~~ 260 (1042)
..+|-+|+++.+..++.--+.+-+| +...+.|-..|++...=++-+|++-.+---.-.+++ ..+.. .
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vR----------iayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~--~ 568 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVR----------IAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQN--Y 568 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceeh----------hhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccc--c
Confidence 4578888999888887754444444 333455555555555555555555444100000000 00000 0
Q ss_pred HHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHH
Q 001623 261 LSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLA 340 (1042)
Q Consensus 261 ~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~a 340 (1042)
=.+.+.-.+.++++...+ .-|-.|-+|..=++.|+.--.-+-..=-||--|..+-=-||||+..-|-+-...
T Consensus 569 ~~~~~~L~~~V~~~v~sL--------lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 569 NTELQALHHTVEQMVSSL--------LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred chHHHHHHHHHHHHHHHH--------HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 112333333444443333 357778899888888775544333344478899999999999999999888877
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCC----hhhHHhhhcCCCHHHHHHH
Q 001623 341 LQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDD----LGPLYDLLIDDPPEIRRAI 416 (1042)
Q Consensus 341 L~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d----~~~V~~Lvfd~~~~Vr~AA 416 (1042)
+.++-- ++ +-+.-.+-..+=|..-..|.+.-|-+.|++-+..|.+.|+|.-.- .+.|+.++-+.+.=||+++
T Consensus 641 I~gvsi---~V-G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 641 IVGVSI---FV-GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ccceEE---EE-eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHH
Confidence 775521 00 111123334444445458999999999999999999999998553 3566777889999999999
Q ss_pred HHHHHH
Q 001623 417 GELVYD 422 (1042)
Q Consensus 417 g~fv~~ 422 (1042)
-.|++.
T Consensus 717 ~~iI~~ 722 (1431)
T KOG1240|consen 717 LGIIAA 722 (1431)
T ss_pred HHHHHH
Confidence 999875
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.63 E-value=9.3 Score=46.68 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=77.0
Q ss_pred CChhHHHHHHHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001623 290 IDPNIRMSCIQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlv 366 (1042)
-+|.+|..|+.+||.-...- -....+..-+..+.-.|.|++.+|-..|+++|..|-+.+.... ..|..-...-|.
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~--~l~~~~~~~~L~ 166 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE--QLFDSNLLSKLK 166 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH--HHhCcchHHHHH
Confidence 57999999999999866443 2346788899999999999999999999999999997653322 245555566666
Q ss_pred hhccccchhHHHHHHHHHHHHHhc
Q 001623 367 ELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 367 eM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.+..-.+..||..+..++..+.++
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc
Confidence 766444668898888888888776
No 38
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.47 E-value=25 Score=44.01 Aligned_cols=208 Identities=19% Similarity=0.154 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHH----HHHHHHHHhHHHHH
Q 001623 163 NFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFI----SVAKMLGAQRETTQ 238 (1042)
Q Consensus 163 ~Fr~n~~eF~~~Lv~~~~~~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv----~va~~l~~~~~~~q 238 (1042)
.--..+..|...+|...+....-++ |.+.++.+|.--.+|+--..|.-...+--.++..-. +|...+...+ ..
T Consensus 57 si~dRIl~fla~fv~sl~q~d~e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l--~~ 133 (892)
T KOG2025|consen 57 SIPDRILSFLARFVESLPQLDKEED-LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL--LI 133 (892)
T ss_pred CcHHHHHHHHHHHHHhhhccCchhh-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH--HH
Confidence 3446788899999987775443333 888888899888899888888766444333332111 1122222111 12
Q ss_pred HHHHHHHcccCCCccHHHHHHHHHHHHh----hHHHHHHHHHh----------------------hhcceEeccccCCCh
Q 001623 239 RQLNAEKKKRVEGPRVESLNKRLSMTHK----NITDLEDMMRK----------------------IFTGLFVHRYRDIDP 292 (1042)
Q Consensus 239 rQleaek~K~~~~~r~e~l~~~~~e~~~----~~~~i~~~i~~----------------------iF~~VFvhRyRDv~p 292 (1042)
|-++.|+. -|++++.. ++.+|. ..-.+.+.+.. =.-+..|.|-|||+.
T Consensus 134 Rl~Drep~-----VRiqAv~a-LsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~ 207 (892)
T KOG2025|consen 134 RLKDREPN-----VRIQAVLA-LSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSG 207 (892)
T ss_pred HHhccCch-----HHHHHHHH-HHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhH
Confidence 22232221 24444321 222220 00011111111 122678999999999
Q ss_pred hHHHHHHHHHHHHHhhCccccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc--
Q 001623 293 NIRMSCIQSLGVWILSYPSFFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-- 369 (1042)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~-- 369 (1042)
-+|...-+.+--=| .-.|+ .+.....+-|.|+|..-.||.+|.++|..=+=+ |.+ .+|+|..
T Consensus 208 anRrlvY~r~lpki---d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~---------~~d---gni~ElL~~ 272 (892)
T KOG2025|consen 208 ANRRLVYERCLPKI---DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLR---------FSD---GNILELLER 272 (892)
T ss_pred HHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh---------hcc---ccHHHHHHH
Confidence 99999887776555 23444 357788999999999999999999988653311 111 2666666
Q ss_pred cccch--hHHHHHHHHHHHHHhcCCCC
Q 001623 370 DDIDV--SVAVCAIGLVKQLLRHQLLP 394 (1042)
Q Consensus 370 ~D~D~--~V~v~AI~Ll~~l~~~~~L~ 394 (1042)
.|+.. +|+|.||+-+-.+.+-.+++
T Consensus 273 ldvsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 273 LDVSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhhh
Confidence 46654 59999999877765554444
No 39
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.40 E-value=5.3 Score=50.60 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=77.1
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc-CCCcccHHHHHHHH
Q 001623 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV-DDNVPTLGLFTERF 361 (1042)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~~~~~~L~~Ft~RF 361 (1042)
|.+-..|-.|.||..-|..+| ..+..=+-+.++.-+--.|.|+++.||..|.-++.++|+- ++....++ +
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls----~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g-----~ 167 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLS----LLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG-----L 167 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc-----H
Confidence 445567889999999999988 4455556677888899999999999999999999999964 33332221 3
Q ss_pred HHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 362 SNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 362 k~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
-.-+.+++.|.|+.|-..|..-+..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 44567788999999999999988887765
No 40
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.68 E-value=9.4 Score=45.52 Aligned_cols=107 Identities=21% Similarity=0.131 Sum_probs=70.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlve 367 (1042)
.|-++.+|..+.+.|| |+. ++.-...|-=+|.|+++.||..++.++.. -. .+.. +.++.
T Consensus 96 ~d~~~~vr~aaa~ALg-~i~-------~~~a~~~L~~~L~~~~p~vR~aal~al~~-r~-~~~~-----------~~L~~ 154 (410)
T TIGR02270 96 QAGPEGLCAGIQAALG-WLG-------GRQAEPWLEPLLAASEPPGRAIGLAALGA-HR-HDPG-----------PALEA 154 (410)
T ss_pred cCCCHHHHHHHHHHHh-cCC-------chHHHHHHHHHhcCCChHHHHHHHHHHHh-hc-cChH-----------HHHHH
Confidence 3778888999998888 221 11122344445688888888888855544 11 1111 24555
Q ss_pred hccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHH
Q 001623 368 LADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1042)
Q Consensus 368 M~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1042)
...|.|+.|+..|++.+..|-..+.++ .+...+-|.++.||.+|..=+
T Consensus 155 ~L~d~d~~Vra~A~raLG~l~~~~a~~-----~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 155 ALTHEDALVRAAALRALGELPRRLSES-----TLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HhcCCCHHHHHHHHHHHHhhccccchH-----HHHHHHcCCCHHHHHHHHHHH
Confidence 556999999999999888877654433 455667789999998887654
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=77.81 E-value=6.9 Score=32.46 Aligned_cols=55 Identities=27% Similarity=0.222 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Q 001623 331 ASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL 387 (1042)
Q Consensus 331 ~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l 387 (1042)
+.||..++.+|-.+-... ...+..+....-+.|+.+..|.+.+||..|+.-|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~--~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC--PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT--HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 479999999998864322 2457778888888999999888889999999877654
No 42
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.32 E-value=6.8 Score=48.35 Aligned_cols=144 Identities=22% Similarity=0.183 Sum_probs=100.6
Q ss_pred HHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc
Q 001623 272 EDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNV 351 (1042)
Q Consensus 272 ~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~ 351 (1042)
+++|-.--=|+|||=.-|-.-++|..-+..++.--.+.|.+ -..-|-||-=|+||....||+.|+.+|..+-.+=...
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~ 444 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR 444 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec
Confidence 34444445599999999999999999999999988888874 4567889999999999999999999999997652111
Q ss_pred -ccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc----------CCC-----CCCChhhHHhhhc---CCCHHH
Q 001623 352 -PTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH----------QLL-----PDDDLGPLYDLLI---DDPPEI 412 (1042)
Q Consensus 352 -~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~----------~~L-----~~~d~~~V~~Lvf---d~~~~V 412 (1042)
..|+.|.+ -..|...+||+..-.+|....=. ++| =|.|.+.||.-++ ..|+..
T Consensus 445 eeql~~il~--------~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 445 EEQLRQILE--------SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHH--------HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhh
Confidence 23443433 22567777777766655432111 222 2778888888887 356665
Q ss_pred HHHH-HHHHHHHHH
Q 001623 413 RRAI-GELVYDHLI 425 (1042)
Q Consensus 413 r~AA-g~fv~~~l~ 425 (1042)
-.+. +.|++.+.+
T Consensus 517 v~s~m~rfl~kh~~ 530 (823)
T KOG2259|consen 517 VLSNMGRFLEKHTS 530 (823)
T ss_pred HHHHHHHHHHhccc
Confidence 5554 456665544
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.10 E-value=18 Score=47.60 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=105.8
Q ss_pred chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCccc--HHHHHHHHHHHHhhhcccc-chhH-----------HHHHH
Q 001623 316 DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPT--LGLFTERFSNRMIELADDI-DVSV-----------AVCAI 381 (1042)
Q Consensus 316 d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~--L~~Ft~RFk~RlveM~~D~-D~~V-----------~v~AI 381 (1042)
|.-|-|+--.+.|+.+.||..+|..|..+...-..++. -..|-+..-++|-.|+.|. ..-| |..|.
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 46788999999999999999999999999864322333 4569999999999999884 3334 33444
Q ss_pred HHHH---HHHhcCCCCCCChh--------------------hHHhhhcCCCHHHHHHHHHHHHH--HHHHhhhcCcccCC
Q 001623 382 GLVK---QLLRHQLLPDDDLG--------------------PLYDLLIDDPPEIRRAIGELVYD--HLIAQKFNSSQSGL 436 (1042)
Q Consensus 382 ~Ll~---~l~~~~~L~~~d~~--------------------~V~~Lvfd~~~~Vr~AAg~fv~~--~l~~~~~~~~~~~~ 436 (1042)
+.+. .++.+|++++.+-+ .|..|+-|+.+-|+++.-+=+.. .+|. .
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---------k 611 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---------K 611 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---------h
Confidence 4443 33345777654431 33455667777777776554221 1221 1
Q ss_pred CCCCCCchhhHHhHHHHHHHhccCCCchhhhHHHhhccccc---cCCChHHHHHHHcCCCCCCCCCchhhHHHHHHHHH
Q 001623 437 KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMK---AMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSA 512 (1042)
Q Consensus 437 ~~~~~~~~~~~l~~l~~~l~~f~~~~~~~~ylVDsLwd~~~---~lkDWe~m~~~LL~d~~~~~L~~~~e~~LieiL~a 512 (1042)
++.+ ..-+..|+.||-+ .+..+ =-|+||... ..--|...-+|||- --++.|+|.||.+++..|-|
T Consensus 612 ~ksN----D~iLshLiTfLND--kDw~L----R~aFfdsI~gvsi~VG~rs~seyllP-Ll~Q~ltD~EE~Viv~aL~~ 679 (1431)
T KOG1240|consen 612 EKSN----DVILSHLITFLND--KDWRL----RGAFFDSIVGVSIFVGWRSVSEYLLP-LLQQGLTDGEEAVIVSALGS 679 (1431)
T ss_pred cccc----cchHHHHHHHhcC--ccHHH----HHHHHhhccceEEEEeeeeHHHHHHH-HHHHhccCcchhhHHHHHHH
Confidence 1111 1222223333322 12112 235666554 45678766666652 11237899999998877754
No 44
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.00 E-value=10 Score=47.15 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=76.7
Q ss_pred cCCChhHHHHHHHHHHHHHh----hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWIL----SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~----~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~ 363 (1042)
+|=.|.||+.-+..+..-+- .-|..-+.+--=|.++-+=+|++.+||..+++.|..+..||-.-+-++.-.-
T Consensus 230 ~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lp---- 305 (1005)
T KOG1949|consen 230 EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLP---- 305 (1005)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHH----
Confidence 78899999999988874333 3366666666666778888999999999999999999988754444443333
Q ss_pred HHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 364 RMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 364 RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
++=-.-.|+-..||+.++.++..|..+
T Consensus 306 al~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 306 ALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHhh
Confidence 444444799999999999999999886
No 45
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.58 E-value=4.2 Score=30.16 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=21.4
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001623 320 KYLGWTLNDKSASVRKSSVLALQNLYE 346 (1042)
Q Consensus 320 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1042)
.++--+|+|++++||..++.+|..+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345567899999999999999998865
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.52 E-value=4.4 Score=33.66 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHhhCcccc--ccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001623 292 PNIRMSCIQSLGVWILSYPSFF--LQDLYLKYLGWTLNDKSASVRKSSVLALQNL 344 (1042)
Q Consensus 292 p~IR~~Ci~eLG~Wi~~yP~~F--L~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 344 (1042)
|.+|..++..||.=....|... ..+.-+..|.=+|.|.+..||..+..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999998333333322 2356678888999999999999999998764
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=70.55 E-value=8.4 Score=36.65 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001623 271 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1042)
Q Consensus 271 i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1042)
+.++++.|.+.|+ .=+-|-++.+|--+.+.|+.-.+..+..++. +.-..++.-.+.|+++.||..| ..|-+|.+
T Consensus 21 ~~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 21 ISKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 5555555555555 5578999999999999999998888887765 2335677888899999999988 66666654
No 48
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.08 E-value=23 Score=42.63 Aligned_cols=135 Identities=19% Similarity=0.096 Sum_probs=97.0
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCcccccc--chhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001623 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQ--DLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1042)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~--d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~R 360 (1042)
-.|-+|-+..+|..|+..||.=-.--|+.-.. ..-|-=+-..|+ |-+.+|-+++++.|..+-+...+ -.++.|.--
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~-~~l~~~~l~ 342 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN-DDLESYLLN 342 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh-cchhhhchh
Confidence 36899999999999999999765544654332 122222333444 46689999999999999876544 345555444
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHhc--CCCCCCChhhH-------HhhhcCCCHHHHHHHHHH
Q 001623 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPL-------YDLLIDDPPEIRRAIGEL 419 (1042)
Q Consensus 361 Fk~RlveM~~D~D~~V~v~AI~Ll~~l~~~--~~L~~~d~~~V-------~~Lvfd~~~~Vr~AAg~f 419 (1042)
--.|+..|-.|.++++|+.||.+...|.+- |=-++.+.+.| .-.+.|.+|.|++|.+.-
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~ 410 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE 410 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH
Confidence 777899999999999999999999999884 33333344333 345679999999998753
No 49
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=69.28 E-value=9.4 Score=42.09 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=46.3
Q ss_pred hcCCCChhHHHHHHHHHHhhhhc--------CCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 325 TLNDKSASVRKSSVLALQNLYEV--------DDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~Ly~~--------~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
+|+|.++.|-..++.+...+|.. +........+++ ||++|++|-.+..++|+..||+.+..+.-.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~-lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNE-LKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH-HHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 48899999999999999999942 111122344555 999999997666777888888877655543
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=12 Score=46.74 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCC
Q 001623 270 DLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDD 349 (1042)
Q Consensus 270 ~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~ 349 (1042)
-+-+-+|.+..+-...=--|-...| ..|++-|+..+.. +|+.|||||- .++.++.+..
T Consensus 273 LlYECvNTVVa~s~s~g~~d~~asi-qLCvqKLr~fied------sDqNLKYlgL--------------lam~KI~ktH- 330 (877)
T KOG1059|consen 273 LLYECVNTVVAVSMSSGMSDHSASI-QLCVQKLRIFIED------SDQNLKYLGL--------------LAMSKILKTH- 330 (877)
T ss_pred HHHHHHHHheeehhccCCCCcHHHH-HHHHHHHhhhhhc------CCccHHHHHH--------------HHHHHHhhhC-
Confidence 4445555555553333334555555 6799999966543 5789999994 3444544321
Q ss_pred CcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 350 NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 350 ~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
--+..++|+-|+..-.|+|.++|..|+.||..|...
T Consensus 331 -----p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 331 -----PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred -----HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 137888998888888999999999999999887764
No 51
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.71 E-value=7.7 Score=28.76 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 363 NRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 363 ~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
+.++++..|.+++||..|+.-+..|.++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 5678888999999999999988888764
No 52
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.32 E-value=15 Score=45.81 Aligned_cols=116 Identities=27% Similarity=0.299 Sum_probs=86.8
Q ss_pred HhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhh
Q 001623 188 VLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKN 267 (1042)
Q Consensus 188 ~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~~~~~~~qrQleaek~K~~~~~r~e~l~~~~~e~~~~ 267 (1042)
.+|++=...+..|=.+++-..|-|||.-.+++.+-+=.++ .
T Consensus 216 ~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i---P------------------------------------ 256 (1005)
T KOG1949|consen 216 SIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI---P------------------------------------ 256 (1005)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc---C------------------------------------
Confidence 3566667789999999999999999998888776664431 1
Q ss_pred HHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccc-cccchhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001623 268 ITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSF-FLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1042)
Q Consensus 268 ~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~-FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1042)
...+.++|..||+.+ -.|...++|...++.|-. |.-.|.. =+=-.-|+-+|.+|+|++..||.+.++.|.++-.
T Consensus 257 ~~i~~~ll~kI~d~~----a~dt~s~VR~svf~gl~~-~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDEL----AFDTSSDVRCSVFKGLPM-ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHh----hhccchheehhHhcCcHH-HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 125777888888876 358888999998888763 3344432 1223346778999999999999999999998864
Q ss_pred c
Q 001623 347 V 347 (1042)
Q Consensus 347 ~ 347 (1042)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
No 53
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.94 E-value=9.9 Score=49.71 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=94.6
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcC-CCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001623 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLN-DKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1042)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~-Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~R 364 (1042)
+|-| |+|++.-.-+||..|..-. .|++. .|..|.-+|. -+++-+|-.++-+|..|-= ..-.+.+.+-+-
T Consensus 933 ~~sd--p~Lq~AAtLaL~klM~iSa-~fces-~l~llftimeksp~p~IRsN~VvalgDlav------~fpnlie~~T~~ 1002 (1251)
T KOG0414|consen 933 LFSD--PELQAAATLALGKLMCISA-EFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAV------RFPNLIEPWTEH 1002 (1251)
T ss_pred cCCC--HHHHHHHHHHHHHHhhhhH-HHHHH-HHHHHHHHHhcCCCceeeecchheccchhh------hcccccchhhHH
Confidence 4555 9999999999999987654 45544 4566666666 8999999999988877631 112233444446
Q ss_pred HhhhccccchhHHHHHHHHHHHHHhcCCCCCC-ChhhHHhhhcCCCHHHHHHHHHHHHH
Q 001623 365 MIELADDIDVSVAVCAIGLVKQLLRHQLLPDD-DLGPLYDLLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 365 lveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~-d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
|-.+..|.++.||..|+-+++-|.-+|++--+ .+.....++-|.+++||.-|-.|..+
T Consensus 1003 Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 66777999999999999999988887665433 34466678889999999998888664
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.42 E-value=13 Score=46.60 Aligned_cols=105 Identities=19% Similarity=0.320 Sum_probs=80.6
Q ss_pred hhhcceEeccccCCChhHHHHHHHHHHH-HHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC-CCcccH
Q 001623 277 KIFTGLFVHRYRDIDPNIRMSCIQSLGV-WILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVD-DNVPTL 354 (1042)
Q Consensus 277 ~iF~~VFvhRyRDv~p~IR~~Ci~eLG~-Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~-~~~~~L 354 (1042)
.++-..|++-|.|=+|.||+.-+..+|. |+.. +...+..-+.-.|.|+++-||..+.-...++|..+ +.....
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~ 159 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS 159 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc
Confidence 3455679999999999999999998882 2222 22335566788999999999999999999999643 221111
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 355 GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 355 ~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
- |-+-+-+|..|.|+.|.+.|+..|..|.+..
T Consensus 160 -g----l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 160 -G----LVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -c----hhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 1 4557777888999999999999999999863
No 55
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=65.39 E-value=58 Score=41.69 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCCh
Q 001623 252 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSA 331 (1042)
Q Consensus 252 ~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~ 331 (1042)
+|++++++-+.....=.. +-.++.++.+.+= -| +++++.+|--.|-..-...|+.-+- -..-+---|.|+++
T Consensus 35 ~kidAmK~iIa~M~~G~d-mssLf~dViK~~~---tr--d~ElKrL~ylYl~~yak~~P~~~lL--avNti~kDl~d~N~ 106 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MSSLFPDVIKNVA---TR--DVELKRLLYLYLERYAKLKPELALL--AVNTIQKDLQDPNE 106 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH---hc--CHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHhhccCCCH
Confidence 467777776665543222 5566666666444 33 5789999888888777777753221 12333445789999
Q ss_pred hHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc--CCCCCC-ChhhHHhhhcCC
Q 001623 332 SVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH--QLLPDD-DLGPLYDLLIDD 408 (1042)
Q Consensus 332 ~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~--~~L~~~-d~~~V~~Lvfd~ 408 (1042)
.+|..+|+.|..|= ...+..-+-+-|.+...|...-||-.|+=-+..|.+. .+..+. -++..-.|++|+
T Consensus 107 ~iR~~AlR~ls~l~--------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 107 EIRGFALRTLSLLR--------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 99999999998772 2334444566778888999999999999999999975 344444 566667788899
Q ss_pred CHHHHHHHHH
Q 001623 409 PPEIRRAIGE 418 (1042)
Q Consensus 409 ~~~Vr~AAg~ 418 (1042)
+|.|-.+|--
T Consensus 179 dP~Vi~nAl~ 188 (757)
T COG5096 179 DPIVIANALA 188 (757)
T ss_pred CchHHHHHHH
Confidence 9987666543
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=64.24 E-value=41 Score=40.23 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=83.2
Q ss_pred eccc-cCCChhHHHHHHHHHHHHHhhCccccccchh-hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Q 001623 284 VHRY-RDIDPNIRMSCIQSLGVWILSYPSFFLQDLY-LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERF 361 (1042)
Q Consensus 284 vhRy-RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RF 361 (1042)
+..+ .|-+++.|..|+-.|+.| ++.- +.-+-=.|.|.++.||..+.++|..+.... -
T Consensus 60 ~~aL~~d~~~ev~~~aa~al~~~---------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------------a 118 (410)
T TIGR02270 60 VSALAEADEPGRVACAALALLAQ---------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------------A 118 (410)
T ss_pred HHHHhhCCChhHHHHHHHHHhcc---------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------------H
Confidence 3444 477799999988888766 2223 677777889999999999999998775422 4
Q ss_pred HHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 362 SNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 362 k~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
...|+.+..|.|+.|+..++.++..... + =...+..++=|.++.||.+|..-+-
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~-~-----~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH-D-----PGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-C-----hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4578888889999999999877766221 1 1346666777999999999988764
No 57
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=63.88 E-value=28 Score=41.05 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHhhCc----cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccc--
Q 001623 300 QSLGVWILSYP----SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDID-- 373 (1042)
Q Consensus 300 ~eLG~Wi~~yP----~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D-- 373 (1042)
-.|..=.+.+| +..+.....+-..-+|+|. .+||.++++.+..+..+++... .|.+-=-+-+|-++.|+|
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~---~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQ---ILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHH---HHHHcCCchhhHhhhcccCC
Confidence 34444556666 4444444445444667776 9999999999999998765433 333322334555564444
Q ss_pred hhH-HHHHHHHHHHHHhc
Q 001623 374 VSV-AVCAIGLVKQLLRH 390 (1042)
Q Consensus 374 ~~V-~v~AI~Ll~~l~~~ 390 (1042)
.++ |++|++++..+.+.
T Consensus 81 ~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEI 98 (371)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 333 88999999999987
No 58
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.21 E-value=95 Score=38.48 Aligned_cols=109 Identities=19% Similarity=0.104 Sum_probs=75.0
Q ss_pred hhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 001623 307 LSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLV 384 (1042)
Q Consensus 307 ~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L-~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll 384 (1042)
...|+ .=+=++.++|+--.+--|...||..|++.|..+-.+- ..+ +...+-.+..|.+-..|.+..||.+|+..|
T Consensus 80 ~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v---~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L 156 (885)
T COG5218 80 PDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV---REIDEVLANGLLEKLSERLFDREKAVRREAVKVL 156 (885)
T ss_pred CCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455 3344578899999999999999999999999887531 121 112333555666667899999999999999
Q ss_pred HHHHhcCCCCCCChhhHHhhh--cCCCHHHHHHHHH
Q 001623 385 KQLLRHQLLPDDDLGPLYDLL--IDDPPEIRRAIGE 418 (1042)
Q Consensus 385 ~~l~~~~~L~~~d~~~V~~Lv--fd~~~~Vr~AAg~ 418 (1042)
+.+.+...=++.++..+..-+ .|....||++|--
T Consensus 157 ~~~Qe~~~neen~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 157 CYYQEMELNEENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 988866422222333332222 2888889998863
No 59
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=61.87 E-value=34 Score=42.51 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=78.4
Q ss_pred CChhHHHHH--HHHHHHHHhhC---ccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHH
Q 001623 290 IDPNIRMSC--IQSLGVWILSY---PSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNR 364 (1042)
Q Consensus 290 v~p~IR~~C--i~eLG~Wi~~y---P~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~R 364 (1042)
.+|+||... +.+|..-...| -+.|+..+..+-+--++.|+.+.+|...+..|..+-=+.+. ..-..|..||..|
T Consensus 429 ~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de-~~k~~~~~ki~a~ 507 (678)
T KOG1293|consen 429 MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE-EEKFQLLAKIPAN 507 (678)
T ss_pred hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH-HHHHHHHHHhhHH
Confidence 578877654 45566666665 45899999999999999999999999999999998433332 2345678888888
Q ss_pred Hhhhc-cccchhHHHHHHHHHHHHHhc
Q 001623 365 MIELA-DDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 365 lveM~-~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.+-|- .|.|++|.+++.+|+..+.-.
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 77776 999999999999988877543
No 60
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=59.27 E-value=15 Score=35.81 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhhCccccccchh-----hhhhhhhcCCCChhHHHHHHHHHH
Q 001623 293 NIRMSCIQSLGVWILSYPSFFLQDLY-----LKYLGWTLNDKSASVRKSSVLALQ 342 (1042)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP~~FL~d~Y-----LKYlGW~L~Dk~~~VR~~~L~aL~ 342 (1042)
.||.-++.-|..|+..||..|-++.. ..++.+.-.++.+..+..+...+.
T Consensus 70 ~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 70 RVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 38888999999999999998887753 235555555555555555544443
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.53 E-value=1.1e+02 Score=41.75 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=74.4
Q ss_pred EeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001623 283 FVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 362 (1042)
Q Consensus 283 FvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk 362 (1042)
...|+-|....+|-.-++-+|.++..+|+...+ |---+.--..|+...||..++|.|..+|... +.+..+++ -.
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~---pdf~~i~~-~c 933 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEET---PDFSKIVD-MC 933 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---CChhhHHH-HH
Confidence 356889999999999999999999999987543 5555666789999999999999999999643 33334444 33
Q ss_pred HHHhhhccccchhHHHHHHHHHHHH
Q 001623 363 NRMIELADDIDVSVAVCAIGLVKQL 387 (1042)
Q Consensus 363 ~RlveM~~D~D~~V~v~AI~Ll~~l 387 (1042)
-||+.-..|-+-+|.-.+...+..+
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHH
Confidence 3555555677777776666655444
No 62
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.43 E-value=53 Score=42.16 Aligned_cols=134 Identities=19% Similarity=0.187 Sum_probs=95.1
Q ss_pred CCChhHHHHHHHHHHHHHhh-Ccccc-ccchhhhhhhhhcCCCChhHHHHHHH---HHHhhhh------------cC---
Q 001623 289 DIDPNIRMSCIQSLGVWILS-YPSFF-LQDLYLKYLGWTLNDKSASVRKSSVL---ALQNLYE------------VD--- 348 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~-yP~~F-L~d~YLKYlGW~L~Dk~~~VR~~~L~---aL~~Ly~------------~~--- 348 (1042)
|=-+-||.--+..|..|+.. +|..- ..-.-|+.+-=+|-|.++=|=+.|++ .|..+|. +.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 45677999999999999984 33322 23455777778899999999999999 4444441 11
Q ss_pred ---CCc-----------ccHHHHHHHHHHHHhhhc----cccchhHHHHHHHHHHHHHhc--CCCCCCChhhHHhhhc--
Q 001623 349 ---DNV-----------PTLGLFTERFSNRMIELA----DDIDVSVAVCAIGLVKQLLRH--QLLPDDDLGPLYDLLI-- 406 (1042)
Q Consensus 349 ---~~~-----------~~L~~Ft~RFk~RlveM~----~D~D~~V~v~AI~Ll~~l~~~--~~L~~~d~~~V~~Lvf-- 406 (1042)
|.+ ..++....||+.+|+.-+ +|.|..-|..++..+..+.+. +.+++ +...|...|.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Confidence 111 123446777888887755 688888899999988888885 34454 5556655554
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q 001623 407 ---DDPPEIRRAIGELVYDH 423 (1042)
Q Consensus 407 ---d~~~~Vr~AAg~fv~~~ 423 (1042)
|..+.+|+||+..+..-
T Consensus 897 ~~~d~s~~vRRaAv~li~~l 916 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAEL 916 (982)
T ss_pred HccCCchhhHHHHHHHHHHH
Confidence 89999999999988753
No 63
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.91 E-value=1e+02 Score=30.26 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHHhhCcc-ccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001623 291 DPNIRMSCIQSLGVWILSYPS-FFLQDLYLKYLGWTLNDKSASVRKSSVLAL 341 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~-~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 341 (1042)
.+++...|++.++.|+.-.|. .+.+..++..+.-.|++. ..|..|+..|
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 799999999999999997755 555667899988888444 4477766543
No 64
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=51.65 E-value=16 Score=29.41 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHH
Q 001623 301 SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLAL 341 (1042)
Q Consensus 301 eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL 341 (1042)
.|+.-+...|...-.+.-++-+.--|.|+++.||.+++..|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35566677888888888899999999999999999998753
No 65
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.32 E-value=57 Score=30.82 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=47.5
Q ss_pred cCCCChhHHHHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 326 LNDKSASVRKSSVLALQNLYEVDD-NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 326 L~Dk~~~VR~~~L~aL~~Ly~~~~-~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
|+|+.+.||..+|..|.+|.++++ .... ..+.-.-+.++..|.|+=|=..||+.+..|...
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~----~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVID----IPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhh----HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 799999999999999999998876 2222 222333445566799999999999999888775
No 66
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.50 E-value=96 Score=42.38 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=81.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhh-hhcCCCChhHHHHHHHHHHhh-hhcCCCcccHHHHHHHHH
Q 001623 285 HRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLG-WTLNDKSASVRKSSVLALQNL-YEVDDNVPTLGLFTERFS 362 (1042)
Q Consensus 285 hRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlG-W~L~Dk~~~VR~~~L~aL~~L-y~~~~~~~~L~~Ft~RFk 362 (1042)
.=|||++-.+++.=+...-.| ..++..=+.+.+++-|+ -+..+.+-+||.++|+-++-. |.+. ++ ..+.=-+..+
T Consensus 1495 ~~y~~~d~a~~~a~~~~~lm~-~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-Fv-~~~~~r~dI~ 1571 (1710)
T KOG1851|consen 1495 NTYRDVDLAKNSALLCHSLMS-LSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-FV-SQELRRDDIR 1571 (1710)
T ss_pred cccccchHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-hc-ccchhHHHHH
Confidence 348999999998877777777 57888889999999999 566667889999999988865 5432 11 1222223355
Q ss_pred HHHhhhccccchhHHHHHHHHHHHHHhcCCCC
Q 001623 363 NRMIELADDIDVSVAVCAIGLVKQLLRHQLLP 394 (1042)
Q Consensus 363 ~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~ 394 (1042)
.++.+...|.+.+|+.+|..+|..|.+.+...
T Consensus 1572 ~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1572 KLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 57777778999999999999999999986554
No 67
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=47.72 E-value=1.4e+02 Score=30.99 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHHHHHHHHcccCCC----------ccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEecccc
Q 001623 228 KMLGAQRETTQRQLNAEKKKRVEG----------PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYR 288 (1042)
Q Consensus 228 ~~l~~~~~~~qrQleaek~K~~~~----------~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyR 288 (1042)
..+...+.+.+|+|+.-.+.+.++ ..++.+++..++.+++++.+++.+..-+..|=++||.
T Consensus 19 ~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYn 89 (151)
T PF14584_consen 19 IILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYN 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEcc
Confidence 345566778888888775543321 3466778888888899999999999999999999995
No 68
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.88 E-value=23 Score=35.33 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc
Q 001623 299 IQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV 347 (1042)
Q Consensus 299 i~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~ 347 (1042)
++||..|....|..|. .-+-||.-=|+|+++.|..+||+.|..|..+
T Consensus 22 ~~Eia~~t~~s~~~~~--ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 22 YEEIAKLTRKSVGSCQ--ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHHHHHHHcCHHHHH--HHHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 5788888888777775 3678899999999999999999999999864
No 69
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.36 E-value=92 Score=36.89 Aligned_cols=81 Identities=25% Similarity=0.171 Sum_probs=64.6
Q ss_pred hhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHH-HHHHHHHHHHhhhccccchhHHHHHHHHHH
Q 001623 307 LSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG-LFTERFSNRMIELADDIDVSVAVCAIGLVK 385 (1042)
Q Consensus 307 ~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~-~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~ 385 (1042)
..++..+-..-+||-+--.+.--++.||..++..|..+... ....+. +-+. .-+.+.+|..|.|..||-..++++.
T Consensus 48 ~~~~~t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~-ll~~~~~~i~D~~~~vR~~~~qll~ 124 (393)
T KOG2149|consen 48 DSGLATSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYA-LLQKLRELILDDDSLVRDALYQLLD 124 (393)
T ss_pred ccCCccccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHH-HHHHhhhhhcCccccHHHHHHHHHH
Confidence 46777888888999999999999999999999999999875 222332 3333 3347889999999999999999998
Q ss_pred HHHhc
Q 001623 386 QLLRH 390 (1042)
Q Consensus 386 ~l~~~ 390 (1042)
.+.-.
T Consensus 125 ~~i~~ 129 (393)
T KOG2149|consen 125 SLILP 129 (393)
T ss_pred HHHhh
Confidence 86554
No 70
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.81 E-value=7.8e+02 Score=31.71 Aligned_cols=89 Identities=22% Similarity=0.439 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccc
Q 001623 294 IRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDID 373 (1042)
Q Consensus 294 IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D 373 (1042)
.=.-||.-+|. +..-+.|-+|-+ |.|- =.|...-||.++-..|.+||++....-..+..++ |||.+..|.|
T Consensus 130 LAL~~I~niG~--re~~ea~~~DI~-KlLv--S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~----riv~LL~D~~ 200 (938)
T KOG1077|consen 130 LALHCIANIGS--REMAEAFADDIP-KLLV--SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ----RIVHLLDDQH 200 (938)
T ss_pred HHHHHHHhhcc--HhHHHHhhhhhH-HHHh--CCcchHHHHHHHHHHHHHHHhcCccccChhhHHH----HHHHHhCccc
Confidence 44456666663 233455555555 4332 3567888999999999999986433345566665 9999999999
Q ss_pred hhHHHHHHHHHHHHHhcC
Q 001623 374 VSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 374 ~~V~v~AI~Ll~~l~~~~ 391 (1042)
.+|...|+.|+..|.+..
T Consensus 201 ~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 201 MGVVTAATSLIEALVKKN 218 (938)
T ss_pred cceeeehHHHHHHHHHcC
Confidence 999999999999999974
No 71
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.10 E-value=3.4e+02 Score=35.40 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccCCCccH---HHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCCh
Q 001623 216 GLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRV---ESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDP 292 (1042)
Q Consensus 216 aL~l~taLv~va~~l~~~~~~~qrQleaek~K~~~~~r~---e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p 292 (1042)
|++.+++||++ .=.+-+..+.-+|+.+++|.....|+ |++-+-+...-+ -+..+.. ..-..|..=.||-|.
T Consensus 788 aI~gv~~Lcev--y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge---l~~~y~~-~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 788 AIRGVVSLCEV--YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE---LVFKYKA-VLINTFLSGVREPDH 861 (982)
T ss_pred HHHHHHHHHHh--cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc---HHHHHHH-HHHHHHHHhcCCchH
Confidence 55666788887 33344566777898888775333333 233222221111 1111111 111234444455555
Q ss_pred hHHHHHHHHHHHHHhhCc---cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhc--CCCcccHHH-HHHHHHHHHh
Q 001623 293 NIRMSCIQSLGVWILSYP---SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEV--DDNVPTLGL-FTERFSNRMI 366 (1042)
Q Consensus 293 ~IR~~Ci~eLG~Wi~~yP---~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~--~~~~~~L~~-Ft~RFk~Rlv 366 (1042)
.-|+..+..||.-+.... +.|+-...-+.+.-.--|.+.-||-+++.-+..|... .+..+-++. -.+..+.-.=
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 559999999999888765 4455555556677777799999999999999888642 233333322 3355554444
Q ss_pred hhccccchhHHHHHHHHHHHH
Q 001623 367 ELADDIDVSVAVCAIGLVKQL 387 (1042)
Q Consensus 367 eM~~D~D~~V~v~AI~Ll~~l 387 (1042)
-|+.+.|..++..|-.-+..|
T Consensus 942 ~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 942 YVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 455666767766655444333
No 72
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=43.52 E-value=6.2e+02 Score=31.69 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=55.6
Q ss_pred hcCCCChhHHHHHHHHHHhhhh------cCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc-----CCC
Q 001623 325 TLNDKSASVRKSSVLALQNLYE------VDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-----QLL 393 (1042)
Q Consensus 325 ~L~Dk~~~VR~~~L~aL~~Ly~------~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~-----~~L 393 (1042)
..+|+.+.||..+..+...+-. .+.+.+.+ |..|- +.-+.--+.+++++..|..+ .+.
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsl----------l~~l~-~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSL----------LGSLL-EAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhh----------HHHHH-HHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 3789999999998887776643 33332221 11111 12345566777777777665 222
Q ss_pred CCCChhhHHhhhcCCCHHHHHHHHHHHHH
Q 001623 394 PDDDLGPLYDLLIDDPPEIRRAIGELVYD 422 (1042)
Q Consensus 394 ~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~~ 422 (1042)
-++=+-.+.+-++|.+|.||+|+.+-+..
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 33344567788899999999999887653
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=42.31 E-value=5.5e+02 Score=29.02 Aligned_cols=201 Identities=16% Similarity=0.184 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHHHhcCC-CCCCChhhHHhhhcCCCHHHH
Q 001623 336 SSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRHQL-LPDDDLGPLYDLLIDDPPEIR 413 (1042)
Q Consensus 336 ~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~-~D~D~~V~v~AI~Ll~~l~~~~~-L~~~d~~~V~~Lvfd~~~~Vr 413 (1042)
+||..++.+.++-...-.=....+-.-+.||.=+ .-.|..||..|++.+....=.+. +..+-+.-+...+-.++..|+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 4666666666543210000112223344555444 67778998888876665443321 111112222232324599999
Q ss_pred HHHHHHHHHHHHHhhhcCcccCCCCCCCCchhhHHhHHHHHHHhccC--CCchhhhHHHhhcc--ccccCCChH-HHHHH
Q 001623 414 RAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSA--DPILSIYVIDDVWE--YMKAMKDWK-CIISM 488 (1042)
Q Consensus 414 ~AAg~fv~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~f~~--~~~~~~ylVDsLwd--~~~~lkDWe-~m~~~ 488 (1042)
..|.+-+++-+..-+.... ......+ .......+++++..+-. +++..+.+++++-. -.+.+.+|. .+..+
T Consensus 82 ~~al~~l~Dll~~~g~~~~--~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIF--DSESDND--ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHHHHcCchhc--cchhccC--ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 9999988886654221111 1111100 01122233444433322 34455666777655 346677744 44444
Q ss_pred Hc--CCCCCCCCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhhhhhhhhHHHHHHHHHHHhHHHHHHHhc
Q 001623 489 LL--DENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMA 565 (1042)
Q Consensus 489 LL--~d~~~~~L~~~~e~~LieiL~asVrqa~g~~~~~~~~~rk~~~~~~~k~~~~~~~~~iT~~li~~LP~LL~Ky~a 565 (1042)
++ .++.. ++...|-++|.-...--... . .+.++.+.+.++|.+-.+...+..
T Consensus 158 ll~yF~p~t-----~~~~~LrQ~L~~Ffp~y~~s--------------~------~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 158 LLLYFNPST-----EDNQRLRQCLSVFFPVYASS--------------S------PENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHcCccc-----CCcHHHHHHHHHHHHHHHcC--------------C------HHHHHHHHHHHHHHHHHHHhCccc
Confidence 44 24321 12234555555555443211 0 124678999999999998888876
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=41.52 E-value=1.6e+02 Score=34.72 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc----c------HHHHHH
Q 001623 290 IDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP----T------LGLFTE 359 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~----~------L~~Ft~ 359 (1042)
.+..-|.+|++.|..-....|+......=++.+--.+.|...+.-..++.++..+...|.... . +..||+
T Consensus 120 ~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 120 EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 677899999999999999999999988888999999999888888899999999998775532 1 222665
Q ss_pred HHHHHHhhhccccc-hhHHHHHHHHHHHHHhc--CCC--CCC---ChhhHHhhhcCCCHHHHHHHHHHHHHHH
Q 001623 360 RFSNRMIELADDID-VSVAVCAIGLVKQLLRH--QLL--PDD---DLGPLYDLLIDDPPEIRRAIGELVYDHL 424 (1042)
Q Consensus 360 RFk~RlveM~~D~D-~~V~v~AI~Ll~~l~~~--~~L--~~~---d~~~V~~Lvfd~~~~Vr~AAg~fv~~~l 424 (1042)
= -.+ ...+.. .+.-..+..++..+++. |++ ... -+..+...+.-.++.+|+++-+.+++-+
T Consensus 200 ~-~~~---~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 200 F-HYR---KIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred h-hcc---ccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 111 122222 23445556666677775 765 333 3556666666788999999999988744
No 75
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=41.06 E-value=50 Score=35.14 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=70.6
Q ss_pred HHHHHhhCccccccc--hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcC--------CCcccHHHHHHHHHHHHhhh---
Q 001623 302 LGVWILSYPSFFLQD--LYLKYLGWTLNDKSASVRKSSVLALQNLYEVD--------DNVPTLGLFTERFSNRMIEL--- 368 (1042)
Q Consensus 302 LG~Wi~~yP~~FL~d--~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~--------~~~~~L~~Ft~RFk~RlveM--- 368 (1042)
.|.|=.-.|+..+.+ .----+--.+.|+++.||..++..|..|.+.. +...+-..||. |-.++-.|
T Consensus 23 ~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFts-lS~tLa~~i~~ 101 (182)
T PF13251_consen 23 FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTS-LSSTLASMIME 101 (182)
T ss_pred HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCccc-HHHHHHHHHHH
Confidence 467777777772221 11123445688999999999999999987431 11122233444 33333332
Q ss_pred --------c-cccchhHHHHHHHHHHHHHhc---CCCCC----CChhhHHhhhcCCCHHHHHHHHH
Q 001623 369 --------A-DDIDVSVAVCAIGLVKQLLRH---QLLPD----DDLGPLYDLLIDDPPEIRRAIGE 418 (1042)
Q Consensus 369 --------~-~D~D~~V~v~AI~Ll~~l~~~---~~L~~----~d~~~V~~Lvfd~~~~Vr~AAg~ 418 (1042)
. ...+..+-.+.++.+..+.++ .-|.. +-+..|..++.+.++.|+.++.-
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~ 167 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALS 167 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2 466777888888888888886 22332 22346667777777777766643
No 76
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.50 E-value=76 Score=41.91 Aligned_cols=253 Identities=19% Similarity=0.100 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhcccCCCcccccccccCCHHHHHHHHHHhhhhhccCCCcchhhhhHHHHHHhhchHHHHHHHHHHhcCCc
Q 001623 776 TILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSV 855 (1042)
Q Consensus 776 ~~~~dl~~lf~~~~~~~~~l~~L~y~p~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~e~~~rR~~La~~cKLi~~~vv 855 (1042)
+++.++++.|.........+.- .+.|+...+.+|+..+...+...++.-.+ .+.+..|...+--.=-..|.++--...
T Consensus 725 ~~l~~~~~~~~~~~~~~~~i~~-~~~~~~e~l~~f~~~~~~~~~l~~~~~~~-~~~ev~e~~~~~~~~~Lii~~~~~~~~ 802 (1048)
T KOG2011|consen 725 IILFKLQLLGNKLTYDLVKIKN-GEVCGAEFLSELRSRSDSMFNLVDEYLEE-VNMEVEEQAVRLGCDRLIIFKVQDMEG 802 (1048)
T ss_pred HHHHHHHHhhhhhhhhhhhhcc-CCCccHHHHHHHHHHhHHHHHHHHHHHHh-hhhHHHHHHHHHHhhHHHHhhhhhccc
Confidence 3344455555443333333333 88999999999988887776655433222 123333333222111223444444444
Q ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHhc-Ch-hHHHHHHHHHHHH----HHHHHHHhccC-CCCccchhhhHHH
Q 001623 856 PKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKK-DE-DVSTIFLEALKRA----YQRHAVEISRS-DDKSLTEKSFVEC 928 (1042)
Q Consensus 856 ~~~~~aa~i~~~Y~k~y~d~gDIiK~tl~~~r~~-~~-~~~~~~~~~L~~l----y~~~~~~~~~~-~~~~~~s~~f~~~ 928 (1042)
+....++.||++=.....--+-.+.......+.. ++ ++-.+-..+.+.. |.+...++... ...+..-..+...
T Consensus 803 ~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~~~~~~~Ie~~~~~r~~~a~~~~li~~~~~~~~~a~~~fK~~~~~ 882 (1048)
T KOG2011|consen 803 KIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSENTNECLKIEQLHKKRKLLASLAKLILENKLPMMEASDIFKMYEKF 882 (1048)
T ss_pred chhccccceechHHHHHHhhhhHHHHHhhhhhcccchHHHHHHHHHHHhhhHHhHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 5555677888776555544444444444433332 11 1111111111111 11111110000 0000011222222
Q ss_pred HHHHhHh-hccccCchhhcchHHHHHHHHhhccccccccCcccchHHhhhhhhccCCCcccHHHHHHHHHhhccCCCCCC
Q 001623 929 KELSSRL-SGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDE 1007 (1042)
Q Consensus 929 keLArRf-a~tf~G~d~~k~R~ai~~lHk~GI~fA~~~~P~nL~FLei~l~eFs~kLl~qDk~~v~~yl~~~~~~~~~~~ 1007 (1042)
..+..-. ..|+ |..+...+.-.++-...+..++|...|..|++...++-.|=...-+-+...+++.-..+.-... +.
T Consensus 883 ~~~~gd~~~~~l-~k~r~i~~~~~~~~l~~~l~~~~~~~~~~la~r~~~~~~~~~~~~r~ai~~~~k~~~~~~~~~~-~~ 960 (1048)
T KOG2011|consen 883 YNDYGDIIKETL-SKAREIDKSEFAKTVDLSLETLFDTEIKELAKRLALTFGLDQLKNRFAIAVLHKKGILFALFKK-DD 960 (1048)
T ss_pred HHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCHHHHhhHHHHHHHHhhcccceeecC-CC
Confidence 2222222 3456 8888888888888889999988888888888888864444444445556666666555544444 57
Q ss_pred CCCCcccHHHHHHHHHhhhhcCCCcccc
Q 001623 1008 DPSGWRPFKSFVETLREKYTKNEGIQGT 1035 (1042)
Q Consensus 1008 ~~~~W~Pl~~yr~sL~~~~~~~~~~~~~ 1035 (1042)
++..|.|=..|.+-|.+.+.| .||.
T Consensus 961 ~~~~~~p~~~fleil~e~s~k---~Qdk 985 (1048)
T KOG2011|consen 961 DPSMEPPNLAFLEILSEFSNK---TQDK 985 (1048)
T ss_pred CccCCCCCchHHHHHHHhcch---hhhh
Confidence 889999999999999999888 5654
No 77
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=39.86 E-value=46 Score=28.86 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=31.9
Q ss_pred chhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Q 001623 74 ELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEA 117 (1042)
Q Consensus 74 ~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~ 117 (1042)
...+++.+ .++.+++++++...+.|..+++.+-.++..|+-+.
T Consensus 19 a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L 61 (68)
T PF05402_consen 19 AAFIWELL-DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQL 61 (68)
T ss_dssp HHHHHHH---SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34578888 57789999999999999999998888888887554
No 78
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=39.19 E-value=1.9e+02 Score=35.84 Aligned_cols=119 Identities=22% Similarity=0.331 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHHHHHHhhC----cc--ccccchhhhhhh----hhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Q 001623 291 DPNIRMSCIQSLGVWILSY----PS--FFLQDLYLKYLG----WTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~y----P~--~FL~d~YLKYlG----W~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~R 360 (1042)
.|.+|..|+-.+|.=+..+ |. .++-..|++|+. ....+++.+.+.-+|++|.++= .+..+..+..|.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~~~~i~~l~~~l-- 486 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-HPSSIKVLEPYL-- 486 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-ChhHHHHHHHhc--
Confidence 5689999999999877654 22 233345666655 5556778888999999998773 232222222222
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCCCChhhH-Hhhhc--CCCHHHHHHHHHHHH
Q 001623 361 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL-YDLLI--DDPPEIRRAIGELVY 421 (1042)
Q Consensus 361 Fk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V-~~Lvf--d~~~~Vr~AAg~fv~ 421 (1042)
.-..+....+|+.||.-+..+.+. .++.+..+ ++++. +.++.||.||--.+.
T Consensus 487 ------~~~~~~~~~iR~~Av~Alr~~a~~---~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 487 ------EGAEPLSTFIRLAAILALRNLAKR---DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 212567788999999988877653 34444444 34333 578889998876655
No 79
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=38.80 E-value=1.2e+02 Score=34.50 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM 368 (1042)
|-+|.+|..++..|| .......+--.++..-+|.+..||..|..+|.++..... -.-++++
T Consensus 85 d~~~~vr~~a~~aLg-------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a------------~~~l~~~ 145 (335)
T COG1413 85 DEDPRVRDAAADALG-------ELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA------------LDPLLEA 145 (335)
T ss_pred CCCHHHHHHHHHHHH-------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh------------hHHHHHH
Confidence 445589999999888 333333333444444449999999999999999874322 1234444
Q ss_pred ccccc------------hhHHHHHHHHHHHHHhcCCCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 369 ADDID------------VSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 369 ~~D~D------------~~V~v~AI~Ll~~l~~~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
..|.+ ..|+..|+..+..+ | ++..+..+-.++-+....||.+|+.-+.
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---~--~~~~~~~l~~~l~~~~~~vr~~Aa~aL~ 205 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGEL---G--DPEAIPLLIELLEDEDADVRRAAASALG 205 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHc---C--ChhhhHHHHHHHhCchHHHHHHHHHHHH
Confidence 44433 24566665544332 2 4555666777777888888888886544
No 80
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=37.97 E-value=7.6e+02 Score=29.37 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCC
Q 001623 271 LEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDD 349 (1042)
Q Consensus 271 i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~ 349 (1042)
..++++.+.+-....+. +.+|..|.+.|+.-++++|..=.=+..|..+...+ +......|..++..+.=+-+ -
T Consensus 187 ~~~ll~~l~~~~~~~~~----~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K--a 260 (415)
T PF12460_consen 187 LEELLQSLLNLALSSED----EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITK--A 260 (415)
T ss_pred HHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH--H
Confidence 44456666555544443 88999999999999998865433235555555555 67778888888877655543 1
Q ss_pred CcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 350 NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 350 ~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.+.+-......+-++++++-.| .+++..|-+-+..|...
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSD 299 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcC
Confidence 1112223344466677887766 56677777766666665
No 81
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=37.41 E-value=1.1e+02 Score=29.56 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=64.7
Q ss_pred ccccchhh---hhhhhhcCC----CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc---cccchhHHHHHH
Q 001623 312 FFLQDLYL---KYLGWTLND----KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA---DDIDVSVAVCAI 381 (1042)
Q Consensus 312 ~FL~d~YL---KYlGW~L~D----k~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~---~D~D~~V~v~AI 381 (1042)
.||++.+| -+|.-.|+| +...-|..++++|..+.+ ..+.....|++.|..+- .+.+ +++..|+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~~pQI~a~L~sal~~~-~l~~~al 75 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSARPQIMACLQSALEIP-ELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHhCCh-hhHHHHH
Confidence 46666554 566667888 777889999999999975 35567777888887766 3555 8999999
Q ss_pred HHHHHHHhcCCCCCCChhhHHhhhc
Q 001623 382 GLVKQLLRHQLLPDDDLGPLYDLLI 406 (1042)
Q Consensus 382 ~Ll~~l~~~~~L~~~d~~~V~~Lvf 406 (1042)
+....+.+. |+++|++++...++
T Consensus 76 ~~W~~fi~~--L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 76 SCWNCFIKT--LDEEDLGPLLDQIF 98 (107)
T ss_pred HHHHHHHHH--CCHHHHHHHHHHHH
Confidence 999999987 57777776655443
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.31 E-value=2.8e+02 Score=35.75 Aligned_cols=123 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccC--CChhHHHHHHHH
Q 001623 224 ISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRD--IDPNIRMSCIQS 301 (1042)
Q Consensus 224 v~va~~l~~~~~~~qrQleaek~K~~~~~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRD--v~p~IR~~Ci~e 301 (1042)
+.-|++..+++...+++...-|+ ++|+ .++.-|..||.-
T Consensus 17 IraakT~AEEr~vI~kE~a~IRa---------------------------------------~ire~~~d~~~r~rniaK 57 (866)
T KOG1062|consen 17 IRAAKTAAEERAVIQKECAAIRA---------------------------------------SIREPTNDPRKRHRNIAK 57 (866)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH---------------------------------------HhcCCCCCHHHHHHHHHH
Q ss_pred HH-HHHhhCccccccchhhh-------------hhhhhc-----------------------------------------
Q 001623 302 LG-VWILSYPSFFLQDLYLK-------------YLGWTL----------------------------------------- 326 (1042)
Q Consensus 302 LG-~Wi~~yP~~FL~d~YLK-------------YlGW~L----------------------------------------- 326 (1042)
|- .-|.-||.+|=+=.+|| |||-||
T Consensus 58 LlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~ 137 (866)
T KOG1062|consen 58 LLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP 137 (866)
T ss_pred HHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH
Q ss_pred --------------CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 327 --------------NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 327 --------------~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
.-.++-||.+++..+.++..+. ...+++|...|+.+|-| ++.+|=..++.++..|.+.+
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~~~~lL~e----k~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIAFRKLLCE----KHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHHHHHHHhh----cCCceeeeHHHHHHHHHhcC
No 83
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=33.76 E-value=7.9e+02 Score=28.27 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchhh---hhhh--hhcC----CC---------ChhHHHHHHHHHHhhhhcCCC
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLYL---KYLG--WTLN----DK---------SASVRKSSVLALQNLYEVDDN 350 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YL---KYlG--W~L~----Dk---------~~~VR~~~L~aL~~Ly~~~~~ 350 (1042)
...+.+|+.|+..||.---. ..-=.+.+. +-+. |.+. |. ++.|...+|.+-.=|...-+
T Consensus 142 s~~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~- 218 (309)
T PF05004_consen 142 SASPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLP- 218 (309)
T ss_pred ccchHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCC-
Confidence 44578999999999953211 111112333 5666 6543 22 35789999998888875322
Q ss_pred cccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCC
Q 001623 351 VPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQL 392 (1042)
Q Consensus 351 ~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~ 392 (1042)
...+....++.-++++++..-.|.+||+.|=+.+..|++.+.
T Consensus 219 ~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 219 DSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 134667888888999999977799999999999999988764
No 84
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=33.29 E-value=24 Score=33.87 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHHHhhCccccccc
Q 001623 291 DPNIRMSCIQSLGVWILSYPSFFLQD 316 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~d 316 (1042)
...||.-++.-|..|+..||..|.+|
T Consensus 63 ~~~~~~~v~~~l~~Wv~~~~~df~~d 88 (122)
T cd06224 63 SKPIRLRVLNVLRTWVENYPYDFFDD 88 (122)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccc
Confidence 44588889999999999999999644
No 85
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.82 E-value=5.3e+02 Score=30.28 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=91.7
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhc-CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHH--H
Q 001623 287 YRDIDPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTL-NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTE--R 360 (1042)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L-~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~--R 360 (1042)
--+.++.+|..-..-||.-....|. .+++...|+-|--.| +|...+||.++|-|+..|.++.. +....|.. -
T Consensus 133 l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~--~g~~~fl~~~G 210 (342)
T KOG2160|consen 133 LENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK--PGQDEFLKLNG 210 (342)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc--HHHHHHHhcCC
Confidence 3578999999999999999999986 566666776655444 67888999999999999998653 44444422 1
Q ss_pred HHHHHhhhcc--ccchhHHHHHHHHHHHHHhcCCCCCCCh------hhHHhhhcCCCHHHHHHHHHHHHHHH
Q 001623 361 FSNRMIELAD--DIDVSVAVCAIGLVKQLLRHQLLPDDDL------GPLYDLLIDDPPEIRRAIGELVYDHL 424 (1042)
Q Consensus 361 Fk~RlveM~~--D~D~~V~v~AI~Ll~~l~~~~~L~~~d~------~~V~~Lvfd~~~~Vr~AAg~fv~~~l 424 (1042)
+ .-|...-. +.+....+.|+-|+..+.+...-..++. ..+-.++..-+-.++.+|-..+...+
T Consensus 211 ~-~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 211 Y-QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred H-HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 1 12333333 4888889999999999998743222211 12334555666677777766655443
No 86
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.18 E-value=4.1e+02 Score=31.20 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=74.7
Q ss_pred cCCChhHHHHHHHHHHHHHhhCcc--ccccchhh-hhhhhhcCCCChhHHHHHHHHHHhhhhcCCCc--ccHHHHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYPS--FFLQDLYL-KYLGWTLNDKSASVRKSSVLALQNLYEVDDNV--PTLGLFTERFS 362 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~--~FL~d~YL-KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~--~~L~~Ft~RFk 362 (1042)
--++++=|..|+..|-.-+..+-. .|.+-.-+ --+| .|.++++.+|..+...|.....|.-.. .-++.+ |.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~---~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG---AL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc---cH
Confidence 346777788888888877777633 55554443 3445 899999999999999999999764221 113333 88
Q ss_pred HHHhhhc-cccchhHHHHHHHHHHHHHhc
Q 001623 363 NRMIELA-DDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 363 ~RlveM~-~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
+-|+.+. .|.+.+|+..|.--+..+.++
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhc
Confidence 8888888 799999999999988888887
No 87
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.31 E-value=26 Score=45.03 Aligned_cols=92 Identities=25% Similarity=0.196 Sum_probs=71.3
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhc----CCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTL----NDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L----~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~ 363 (1042)
||+.-.=|+. .-|.+|+ .|+.|.++.+|.-+.-.. -.-...+|++.++--..||+. ...+++.|...|.+
T Consensus 56 RDivTK~rAL--qDLiq~n--D~sQF~NeqFLna~avlfprLsIev~~~~rl~~~qf~s~L~~~--l~KKi~k~lk~~i~ 129 (1525)
T COG5219 56 RDIVTKCRAL--QDLIQWN--DPSQFDNEQFLNALAVLFPRLSIEVEMNPRLEGLQFDSRLYEI--LSKKIGKRLKKTIL 129 (1525)
T ss_pred hhHHHHHHHH--HHHHhcc--CHhhhcHHHHHHHHHHHhhheeeeeeeccchhhhhhHHHHHHH--HHHHHHHHHHhhhh
Confidence 6777676765 8899998 899999999986544322 123457899999999999963 33579999999999
Q ss_pred HHhhhccccchhHHHHHHHHHH
Q 001623 364 RMIELADDIDVSVAVCAIGLVK 385 (1042)
Q Consensus 364 RlveM~~D~D~~V~v~AI~Ll~ 385 (1042)
|.+=-..|.|..|.+.|-.=+.
T Consensus 130 ~~llg~~d~d~sVsv~a~~~~~ 151 (1525)
T COG5219 130 RGLLGLKDVDDTVSVEANIDTL 151 (1525)
T ss_pred HHHHhhcchhhhcccccchHHH
Confidence 9998889999999998865333
No 88
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.88 E-value=84 Score=31.26 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=41.6
Q ss_pred ChhHHHHHHHHHHHHHhhCcc--ccccc-hhhhhhhhhcCCCChhHHHHHHHHHHhhhh
Q 001623 291 DPNIRMSCIQSLGVWILSYPS--FFLQD-LYLKYLGWTLNDKSASVRKSSVLALQNLYE 346 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~--~FL~d-~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~ 346 (1042)
||..=++...-||..++.||. .++++ .+=--+--++++++++||-++|+++|++-.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 788888888889999999987 34432 233345567899999999999999999864
No 89
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.50 E-value=51 Score=44.54 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHhhCccccc---cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhh
Q 001623 292 PNIRMSCIQSLGVWILSYPSFFL---QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIEL 368 (1042)
Q Consensus 292 p~IR~~Ci~eLG~Wi~~yP~~FL---~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM 368 (1042)
.+-|..-+..+|.-...+-..+. ++.| +-+-|-++|++.+||.+|++.....|-+...+.+ =..-+...
T Consensus 273 ~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~-~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~-------~~~~~~~l 344 (1266)
T KOG1525|consen 273 EEVRLKAVKLVGRMFSDKDSQLSETYDDLW-SAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK-------ASTILLAL 344 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccchHHH-HHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh-------HHHHHHHH
Confidence 45677777777765555544444 2333 3444569999999999999988888755332221 11122233
Q ss_pred c-cccchhHHHHHHHHHHHHHhc---CCCCCCChhhHHhhhcCCCHHHHHHHHH
Q 001623 369 A-DDIDVSVAVCAIGLVKQLLRH---QLLPDDDLGPLYDLLIDDPPEIRRAIGE 418 (1042)
Q Consensus 369 ~-~D~D~~V~v~AI~Ll~~l~~~---~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~ 418 (1042)
+ .|.|++||+..+-++...-.. -.+.+.-+..|.+..-|....||+.|-.
T Consensus 345 ~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~ 398 (1266)
T KOG1525|consen 345 RERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMN 398 (1266)
T ss_pred HhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3 577777776554433222221 1122224567778888999999999865
No 90
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.34 E-value=1e+02 Score=38.92 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=49.4
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHH-HHHHHHHHHhhhc-cccchhHHHHHHHHHHHHHh
Q 001623 319 LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGL-FTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLR 389 (1042)
Q Consensus 319 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~-Ft~RFk~RlveM~-~D~D~~V~v~AI~Ll~~l~~ 389 (1042)
.--+---|+|.+|-+|-++|+.+.++|.-+...++=++ |+ |+|--+ .|...-||-.||+|+..|+-
T Consensus 348 v~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~-----~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 348 VGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVI-----RLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 34455668999999999999999999975543333332 32 445455 79999999999999987765
No 91
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.67 E-value=2.2e+02 Score=32.80 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=64.0
Q ss_pred ChhHHHHHHHHHHHHHhhCcccccc--c----hhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCC--cccHHHHHHHHH
Q 001623 291 DPNIRMSCIQSLGVWILSYPSFFLQ--D----LYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDN--VPTLGLFTERFS 362 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~~FL~--d----~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~--~~~L~~Ft~RFk 362 (1042)
.|++|.....-|..-+..+|..|++ + ..+..+-|++..++.+|-..||++|..+..+-.. .+....|.+.|-
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6999999999999888888888864 2 5678889999999999999999999999865322 344556766665
Q ss_pred HHHhh----hccccchh
Q 001623 363 NRMIE----LADDIDVS 375 (1042)
Q Consensus 363 ~Rlve----M~~D~D~~ 375 (1042)
-.++. +..|.+..
T Consensus 213 ~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHHHHHHSTT-G
T ss_pred HHHHHHHHHHHHCcccH
Confidence 44443 44577654
No 92
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.49 E-value=99 Score=39.14 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=48.8
Q ss_pred hhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc
Q 001623 323 GWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 323 GW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.-+|+-+.+-||.+++..|.++|-. .-..|+.=+- |++|=..|.|++|...|+++++.|-+.
T Consensus 150 ~tLL~sskpYvRKkAIl~lykvFLk--YPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 150 FTLLNSSKPYVRKKAILLLYKVFLK--YPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHh--hhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 3468889999999999999999853 1123444333 666667899999999999999999986
No 93
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.76 E-value=3.9e+02 Score=34.59 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=99.5
Q ss_pred ccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001623 287 YRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1042)
Q Consensus 287 yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlv 366 (1042)
-+|-.|-+|...-.+|-.--..-|+..= .-.-.++-+|+|+++.|=-+++-+-..+|- .++++--.-|| |+.
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCP-----erldLIHknyr-klC 223 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCP-----ERLDLIHKNYR-KLC 223 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhch-----hHHHHhhHHHH-HHH
Confidence 4799999999887777654444455543 678899999999999999999999999884 45666666666 888
Q ss_pred hhccccchhHHHHHHHHHHHHHhcCCCCCC------------------------------Chh----hHHhhhcCCCHHH
Q 001623 367 ELADDIDVSVAVCAIGLVKQLLRHQLLPDD------------------------------DLG----PLYDLLIDDPPEI 412 (1042)
Q Consensus 367 eM~~D~D~~V~v~AI~Ll~~l~~~~~L~~~------------------------------d~~----~V~~Lvfd~~~~V 412 (1042)
.+..|+|.==.+-.|+.|+.--++++.+|. |.+ ..-.|+|+.++.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 888899988899999999999999887761 221 2346788888888
Q ss_pred HHHHHHHHH
Q 001623 413 RRAIGELVY 421 (1042)
Q Consensus 413 r~AAg~fv~ 421 (1042)
--|+++..|
T Consensus 304 VmA~aql~y 312 (968)
T KOG1060|consen 304 VMAVAQLFY 312 (968)
T ss_pred HHHHHhHHH
Confidence 888888765
No 94
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.72 E-value=1.9e+02 Score=32.54 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=60.3
Q ss_pred hhhhhhcCCCChhHHHHHHHHHHhhhhc-C-C--CcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcCCCCC
Q 001623 320 KYLGWTLNDKSASVRKSSVLALQNLYEV-D-D--NVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPD 395 (1042)
Q Consensus 320 KYlGW~L~Dk~~~VR~~~L~aL~~Ly~~-~-~--~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~~L~~ 395 (1042)
+-+|--|.+.++.+|.+++.-|..+.+. + + .......+++-|.+|+ .|......|++-+..|.+..-+++
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl------~D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL------DDHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh------ccHhhHHHHHHHHHHHHhCcCCCh
Confidence 3478889999999999999999988754 2 1 1234566666666666 467777777888888888877777
Q ss_pred CChhhHHhhhcC
Q 001623 396 DDLGPLYDLLID 407 (1042)
Q Consensus 396 ~d~~~V~~Lvfd 407 (1042)
+....+.+-+|+
T Consensus 76 ~~~~~i~~~l~~ 87 (262)
T PF14500_consen 76 ESAVKILRSLFQ 87 (262)
T ss_pred hhHHHHHHHHHH
Confidence 777777777663
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=27.60 E-value=3.3e+02 Score=39.25 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHHHHHhhCcc---ccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhh
Q 001623 291 DPNIRMSCIQSLGVWILSYPS---FFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIE 367 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~---~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlve 367 (1042)
.++|+......|+.-....|+ ...+..=+--+-.+|+..+.+||.++-.+|..|+..-....+...-..-=-+-|++
T Consensus 622 s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~ 701 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK 701 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH
Confidence 456666666666555544433 45566667788889999999999999999999996432222222222223446999
Q ss_pred hccccchhHHHHHHHHHHHHHhcC-----CCCCCChhhHHhhhcCCCHHHHHHHHHHHH
Q 001623 368 LADDIDVSVAVCAIGLVKQLLRHQ-----LLPDDDLGPLYDLLIDDPPEIRRAIGELVY 421 (1042)
Q Consensus 368 M~~D~D~~V~v~AI~Ll~~l~~~~-----~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~ 421 (1042)
|..+.|.+|...|...|..|.+.+ +...+-+..+.+++-+.++..|+-|+.-+.
T Consensus 702 LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 702 LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999999999999999999974 455666888999999999999998886553
No 96
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.27 E-value=55 Score=33.73 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=73.5
Q ss_pred cCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH--HHH-HHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL--GLF-TERFSNR 364 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L--~~F-t~RFk~R 364 (1042)
+-+.+++|....-.+..-+..+++.| .+...+|+.-.+.+...+....++.+|..||-.+ +.+ ..| ++.|.+-
T Consensus 15 ~~~~~~~r~~a~v~l~k~l~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~---~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 15 LRQPEEVRSHALVILSKLLDAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP---PDVGSELFLSEGFLES 90 (157)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT---HHHHHHHCCTTTHHHH
T ss_pred cCCCHhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC---HHHHHHHHhhhhHHHH
Confidence 67788999988888888888888887 5566788888888888889999999999999643 222 223 5678888
Q ss_pred Hhhhcc--ccchhHHHHHHHHHHHH
Q 001623 365 MIELAD--DIDVSVAVCAIGLVKQL 387 (1042)
Q Consensus 365 lveM~~--D~D~~V~v~AI~Ll~~l 387 (1042)
|+.|+. -.|..+...+.+++..=
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aA 115 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAA 115 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH
Confidence 898886 77888888888876543
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.70 E-value=2.1e+02 Score=36.88 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=43.5
Q ss_pred cccchhHHHHHHHHHHHHHhc-C-------CCCCCChhhHHhhhcCCCHHHHHHHHHHH
Q 001623 370 DDIDVSVAVCAIGLVKQLLRH-Q-------LLPDDDLGPLYDLLIDDPPEIRRAIGELV 420 (1042)
Q Consensus 370 ~D~D~~V~v~AI~Ll~~l~~~-~-------~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv 420 (1042)
--.|..||..||+|++.++++ | +-.|.-+-.+..++-|++.+||.+|--|+
T Consensus 132 e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 132 EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 467999999999999999997 2 33577788899999999999999998664
No 98
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.64 E-value=2.7e+02 Score=25.62 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=36.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHcccCC----CccHHHHHHHHHHHHhhHHHHHHHHH
Q 001623 226 VAKMLGAQRETTQRQLNAEKKKRVE----GPRVESLNKRLSMTHKNITDLEDMMR 276 (1042)
Q Consensus 226 va~~l~~~~~~~qrQleaek~K~~~----~~r~e~l~~~~~e~~~~~~~i~~~i~ 276 (1042)
-.+.+....+..|.|++.-+.+-.. .+|++++..++..++.+.+.|.++++
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556788888899999766554322 35677778888888888888877776
No 99
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=26.57 E-value=3e+02 Score=31.72 Aligned_cols=120 Identities=14% Similarity=0.307 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhC----cHHHHHHHHHHHHHHcCCceecCccccCCCChhHHHHHHHH----HHhcCCcccccccccc
Q 001623 88 IPQVVKLWVERYEKD----AKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVN----LARRGEVEDYQSSKRK 159 (1042)
Q Consensus 88 i~~va~~Wie~Y~~d----~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~~~ii~~l~e----~~~~~~~~~y~~sk~k 159 (1042)
++.+++--+..|+.+ ++.-+..++.-++..-|-. ++ -...+|...+-+ ...++ .+
T Consensus 69 i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~------~~v~~I~~~vf~~Tl~MI~~d-~~-------- 131 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQ------PQVPQILEAVFECTLPMINKD-FE-------- 131 (319)
T ss_dssp HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CC------CCHHHHHHHHHHHHHHHHSST-SS--------
T ss_pred HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hh------hhHHHHHHHHHHHHHHHHHhh-hh--------
Confidence 345566677788865 3334555555555544431 11 134455444432 22221 22
Q ss_pred cchhHHHHHHHHHHHHHHhhccCCc-cchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001623 160 ELKNFKDNLVSFWDNLVVECQNGPL-FDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLG 231 (1042)
Q Consensus 160 ~~K~Fr~n~~eF~~~Lv~~~~~~~L-yD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~~l~ 231 (1042)
.+..+|.+|-.|++.++..|-...+ ++...+..++.++. -+++|+.+-++-.-.++|.++...+.
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~-------wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV-------WGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH-------HHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH-------HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999988743322 45656666666655 35677766665555555555544444
No 100
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=26.34 E-value=58 Score=40.54 Aligned_cols=116 Identities=19% Similarity=0.332 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHHHhhCcc------------ccccchhhhh----hhhhcCCCChhHHHHHHHHHHhhhhcCCCcccH
Q 001623 291 DPNIRMSCIQSLGVWILSYPS------------FFLQDLYLKY----LGWTLNDKSASVRKSSVLALQNLYEVDDNVPTL 354 (1042)
Q Consensus 291 ~p~IR~~Ci~eLG~Wi~~yP~------------~FL~d~YLKY----lGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L 354 (1042)
.|.+|..|+-.+|.=+..+=. ..+-..|.+| ++.+...++.+.+..+|++|.++= .+..+
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-~~~~i--- 523 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-HPESI--- 523 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--GGGH---
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-Cchhh---
Confidence 457888888888876665422 2334455555 455556788899999999999883 22222
Q ss_pred HHHHHHHHHHHhhhcc---ccchhHHHHHHHHHHHHHhcCCCCCCChhhH-Hhhhc--CCCHHHHHHHHHHHH
Q 001623 355 GLFTERFSNRMIELAD---DIDVSVAVCAIGLVKQLLRHQLLPDDDLGPL-YDLLI--DDPPEIRRAIGELVY 421 (1042)
Q Consensus 355 ~~Ft~RFk~RlveM~~---D~D~~V~v~AI~Ll~~l~~~~~L~~~d~~~V-~~Lvf--d~~~~Vr~AAg~fv~ 421 (1042)
+.+...+. +....+|+.||.-+..+... .++.+..+ ++++. .+++.||-||.-.+.
T Consensus 524 --------~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 524 --------PVLLPYIEGKEEVPHFIRVAAIQALRRLAKH---CPEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp --------HHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred --------HHHHhHhhhccccchHHHHHHHHHHHHHhhc---CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 23334442 56889999999977655333 23333333 34333 467889999976554
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.98 E-value=1.6e+02 Score=36.43 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHHHhh--Ccccccc---------------chhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcc
Q 001623 290 IDPNIRMSCIQSLGVWILS--YPSFFLQ---------------DLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVP 352 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~--yP~~FL~---------------d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~ 352 (1042)
-+|+-|---++.|+.+|.. ||+.-+. ..|.||+.--+-=.++-||..++.+|.+.--+.+.
T Consensus 443 ~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-- 520 (898)
T COG5240 443 NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-- 520 (898)
T ss_pred hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--
Confidence 4677777778888888864 5554433 46888888777778999999999999887322211
Q ss_pred cHHHHHHHHHHHHhhhc-cccchhHHHHHHHHHHHHHhc
Q 001623 353 TLGLFTERFSNRMIELA-DDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 353 ~L~~Ft~RFk~RlveM~-~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.|..+=-..++.-| .|.|.+||-.|-=++..|...
T Consensus 521 ---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 521 ---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred ---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 12222222344445 799999999998888877743
No 102
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=25.32 E-value=2.3e+02 Score=36.93 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCC---
Q 001623 252 PRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLND--- 328 (1042)
Q Consensus 252 ~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~D--- 328 (1042)
.|.|+|+.=+..+++...++..-...+....--+|-.|+.-.+=+.-..-|+.--...+.-|.. |-+-++=.|.|
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLLDRLK 346 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHHHHhh
Confidence 5667776666666555533444344444456677888887776655444444444555555543 44444555555
Q ss_pred -CChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhc-C--CCCCCChhhH---
Q 001623 329 -KSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPL--- 401 (1042)
Q Consensus 329 -k~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~-~--~L~~~d~~~V--- 401 (1042)
+.+.+|-+.++++..... ...+. +.-+-|+++..++.+.++.+.-.++....+. + ..+.+.++.+
T Consensus 347 ekk~~l~d~l~~~~d~~~n----s~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~ 418 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILN----STPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPH 418 (815)
T ss_pred hccHHHHHHHHHHHHHHHh----cccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHH
Confidence 455555555555544443 11221 1233567778999999999998888877775 3 2333444444
Q ss_pred -HhhhcCCCHHHHHHHHHH
Q 001623 402 -YDLLIDDPPEIRRAIGEL 419 (1042)
Q Consensus 402 -~~Lvfd~~~~Vr~AAg~f 419 (1042)
+..+=|....||.||-+-
T Consensus 419 ~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 419 LIKHINDTDKDVRKAALEA 437 (815)
T ss_pred HhhhccCCcHHHHHHHHHH
Confidence 444559999999999764
No 103
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.32 E-value=1.9e+02 Score=33.50 Aligned_cols=97 Identities=19% Similarity=0.118 Sum_probs=78.1
Q ss_pred CCChhHHHHHHHHHHHHHhhCccccccchh--hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHh
Q 001623 289 DIDPNIRMSCIQSLGVWILSYPSFFLQDLY--LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMI 366 (1042)
Q Consensus 289 Dv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~Y--LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~Rlv 366 (1042)
|-.|..|..-|+.+-...-.--..|..++| +|-+.-++.|+.+ -..+..+|-++..++....+|-.- |-.+++
T Consensus 14 ~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~---~~k~l~ 88 (353)
T KOG2973|consen 14 SLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD---LLKVLM 88 (353)
T ss_pred cCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH---HHHHHH
Confidence 678999999999887776664456777776 7888899999988 566778999999887766554333 778999
Q ss_pred hhccccchhHHHHHHHHHHHHHhc
Q 001623 367 ELADDIDVSVAVCAIGLVKQLLRH 390 (1042)
Q Consensus 367 eM~~D~D~~V~v~AI~Ll~~l~~~ 390 (1042)
.|+.|-....+-....+|..+.+.
T Consensus 89 ~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 89 DMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHhcCcccchHHHHHHHHHHhccC
Confidence 999999889998888888888775
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=24.12 E-value=4.5e+02 Score=28.04 Aligned_cols=121 Identities=19% Similarity=0.189 Sum_probs=81.1
Q ss_pred HHHHHHHhhhcceEecc-----------ccCCChhHHHHHHHHHHHHHhhCccccccch---------------------
Q 001623 270 DLEDMMRKIFTGLFVHR-----------YRDIDPNIRMSCIQSLGVWILSYPSFFLQDL--------------------- 317 (1042)
Q Consensus 270 ~i~~~i~~iF~~VFvhR-----------yRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~--------------------- 317 (1042)
.+-.+|..+|=.....+ -+|-+|.+|+.-+..|..-+...-.+|....
T Consensus 21 ~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~ 100 (182)
T PF13251_consen 21 SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIM 100 (182)
T ss_pred eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Confidence 46777777776551111 3689999999999999987776544443322
Q ss_pred -hhhhhhhhcCC-CChhHHHHHHHHHHhhhhcCCCcccH-HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHhcC
Q 001623 318 -YLKYLGWTLND-KSASVRKSSVLALQNLYEVDDNVPTL-GLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQ 391 (1042)
Q Consensus 318 -YLKYlGW~L~D-k~~~VR~~~L~aL~~Ly~~~~~~~~L-~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l~~~~ 391 (1042)
--+.+.|.|.. +++.+=..++|.|.-|-.+--. .+| ..+..++-..+-......|.+|++.+.-++..+....
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY-~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY-HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh-hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 23567788765 4788888888888888765322 122 1233444445555555599999999999999888764
No 105
>PHA01750 hypothetical protein
Probab=23.67 E-value=2.1e+02 Score=25.57 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhh
Q 001623 216 GLQLVTSFISVAKML-GAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKN 267 (1042)
Q Consensus 216 aL~l~taLv~va~~l-~~~~~~~qrQleaek~K~~~~~r~e~l~~~~~e~~~~ 267 (1042)
-++|-++|-+..+++ ...++|...|+++-+.| .+.+++++.++..+
T Consensus 25 YlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kik------qDnl~~qv~eik~k 71 (75)
T PHA01750 25 YLKIKQALKDAVKEIVNSELDNLKTEIEELKIK------QDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHh
Confidence 356777776655544 45688888888776643 44455555555443
No 106
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=23.57 E-value=3.7e+02 Score=30.95 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=46.8
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhc-c---ccchhHHHHHHHHHHHH-HhcCCC
Q 001623 319 LKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELA-D---DIDVSVAVCAIGLVKQL-LRHQLL 393 (1042)
Q Consensus 319 LKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~-~---D~D~~V~v~AI~Ll~~l-~~~~~L 393 (1042)
|+..-=.|.||++..|..+|.+|.+++... -+..|....+.-|++.+ . =-..+-+..|.+++..+ +..|
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~----~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg-- 118 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR----YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG-- 118 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC--
Confidence 444444579999999999999999999754 23456666666666555 1 11123345565555555 3333
Q ss_pred CCCChhhHHh
Q 001623 394 PDDDLGPLYD 403 (1042)
Q Consensus 394 ~~~d~~~V~~ 403 (1042)
..++.+.+|.
T Consensus 119 ~g~~~~ei~~ 128 (309)
T PF05004_consen 119 AGEDSEEIFE 128 (309)
T ss_pred CCccHHHHHH
Confidence 2334444443
No 107
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.81 E-value=1.2e+03 Score=26.88 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=47.0
Q ss_pred cCCCChhHHHHHHHHHHh-hhhcCCCc--ccHHHHHHHHHHHHhhhccccch----hHHHHHHHHHHHHHh---cCCCCC
Q 001623 326 LNDKSASVRKSSVLALQN-LYEVDDNV--PTLGLFTERFSNRMIELADDIDV----SVAVCAIGLVKQLLR---HQLLPD 395 (1042)
Q Consensus 326 L~Dk~~~VR~~~L~aL~~-Ly~~~~~~--~~L~~Ft~RFk~RlveM~~D~D~----~V~v~AI~Ll~~l~~---~~~L~~ 395 (1042)
|.+-.+++=..+|..|.. +..++... .++..|.+.+-.+|+++....+. .|+..|-+++..+.. +|+.-+
T Consensus 167 l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~ 246 (330)
T PF11707_consen 167 LRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFP 246 (330)
T ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccC
Confidence 334455555666777763 55544322 45788999999999998754444 788888888877774 365544
Q ss_pred CC
Q 001623 396 DD 397 (1042)
Q Consensus 396 ~d 397 (1042)
+.
T Consensus 247 d~ 248 (330)
T PF11707_consen 247 DN 248 (330)
T ss_pred CC
Confidence 43
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=21.75 E-value=2.6e+02 Score=36.17 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=30.7
Q ss_pred cccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhh
Q 001623 286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNL 344 (1042)
Q Consensus 286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~L 344 (1042)
.-.|..-.+|..=++.+-.=....-..|+++.|-.++---|.|++.++|..|.+.|..|
T Consensus 487 l~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 487 LAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 34444555555555555444444335555555555543336666666666655555554
No 109
>PHA02567 rnh RnaseH; Provisional
Probab=21.64 E-value=2e+02 Score=33.19 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=54.4
Q ss_pred cccCccCCCCCCCCCCCCCCcccccccccccccCcccccccccccchhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHH
Q 001623 29 RTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIA 108 (1042)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~ 108 (1042)
=.-|+||+.|-.. .++|+.-.+-..-|..+ .+ ....+.+......---.-.+|.++|++|.. |
T Consensus 194 L~GDsSDNIPGVp----~~~d~~~~~~~ger~~~-------~~---~~~~~~~~~~~~~~~~~~~e~~~r~~~n~~--l- 256 (304)
T PHA02567 194 IKGDKKDGVASIK----VRSDYILTRVEGERAPS-------IS---TKELEAIADAEDPKVLLTEEEYERYDENRE--L- 256 (304)
T ss_pred hCCcccCCcCCCC----CCCCeEEEecccccCCc-------cc---HHHHHHHhcccchhhhcCHHHHHHhhccce--e-
Confidence 3456777777665 34455544433333322 11 113344444443334456789999999876 1
Q ss_pred HHHHHHHHHcCCceecCccccCCCC--hhHHHHHHHHHHhcCCcccccccccccchhHHHH
Q 001623 109 ELLTMLFEACGAKYYLQGESLDEID--VDDVVVALVNLARRGEVEDYQSSKRKELKNFKDN 167 (1042)
Q Consensus 109 eLinfil~~~Gc~~~It~~~~~~~d--~~~ii~~l~e~~~~~~~~~y~~sk~k~~K~Fr~n 167 (1042)
.++| +++|...+.+.|+.. -+.+|+|-+.-|-+|
T Consensus 257 ---------------------~d~~~ip~~i~~~i~~~~~~~----~~~~~~k~~~yf~~~ 292 (304)
T PHA02567 257 ---------------------IDFDFIPDDIADKIIEAYNSY----KPPPRGKIYSYFVKN 292 (304)
T ss_pred ---------------------eccccCcHHHHHHHHHHHhcC----CCCCccchHHHHHHh
Confidence 1223 578888888888642 234567766666544
No 110
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.56 E-value=2.7e+02 Score=32.58 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHHHhhCcc-----ccc-cchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001623 290 IDPNIRMSCIQSLGVWILSYPS-----FFL-QDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1042)
Q Consensus 290 v~p~IR~~Ci~eLG~Wi~~yP~-----~FL-~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~ 363 (1042)
-.--.|.-.+.=||.-+...+. .|+ ++.+||.+-.+|.|++..+|.++.....---.||...+.+..+.-+=|+
T Consensus 221 ~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~ 300 (335)
T PF08569_consen 221 SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNRE 300 (335)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHH
T ss_pred CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 3445788889999988766544 333 7889999999999999999999998887777888888889999999999
Q ss_pred HHhhhc
Q 001623 364 RMIELA 369 (1042)
Q Consensus 364 RlveM~ 369 (1042)
+|++..
T Consensus 301 kLl~fl 306 (335)
T PF08569_consen 301 KLLRFL 306 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 111
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.41 E-value=3.4e+02 Score=25.88 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcccCCCccHHHHHHHHHHHHhhHHHHHHHHH
Q 001623 225 SVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMR 276 (1042)
Q Consensus 225 ~va~~l~~~~~~~qrQleaek~K~~~~~r~e~l~~~~~e~~~~~~~i~~~i~ 276 (1042)
.-++.+....+..|.|++.-+.+ ...++.+..++.++..+.+.|.++++
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~~n---~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLEED---SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 34456788888899999665543 34588999999999999999998876
No 112
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=21.10 E-value=1.5e+02 Score=33.52 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=37.2
Q ss_pred hhhHHHHHHHhHhhccccCchhhcchHHHHHHHHhhcccccc
Q 001623 923 KSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL 964 (1042)
Q Consensus 923 ~~f~~~keLArRfa~tf~G~d~~k~R~ai~~lHk~GI~fA~~ 964 (1042)
+++...-+.|++||-.. |+..-.-++++..+|++|...|+.
T Consensus 201 Ptle~f~~~a~~FA~~~-Gl~~~~v~~~~~~~~~~g~l~as~ 241 (283)
T COG1829 201 PTLENFMEEAREFARRT-GLMSEEVKEAAEALHSVGGLGASM 241 (283)
T ss_pred CCHHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhcCchhHhH
Confidence 56888899999999999 999888999999999999998875
No 113
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.56 E-value=4.3e+02 Score=24.92 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=56.4
Q ss_pred cCCChhHHHHHHHHHHHHHhhCc-cccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHH
Q 001623 288 RDIDPNIRMSCIQSLGVWILSYP-SFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFS 362 (1042)
Q Consensus 288 RDv~p~IR~~Ci~eLG~Wi~~yP-~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk 362 (1042)
.|-.|=||+-.+..|...+.... ..=--+.-|.-+--.|.|.++=|=+.|+++|..|-..... ..+..+.+.|.
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-~vl~~L~~~y~ 87 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-EVLPILLDEYA 87 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-HHHHHHHHHHh
Confidence 57778899999999999999988 4444567778888899999999999999999998643211 23444444443
No 114
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=20.54 E-value=6.3e+02 Score=28.73 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=72.5
Q ss_pred CccchhHHHhhhhhcchhhhcc--cccchHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHH-HHhhcchhhHHHHHhhhH
Q 001623 566 DKAKVPSLIDIVMHMKLELYSL--KRDEKSFETILQLVNDAFFKHGEKE--ALRSCVKAIK-FCSAESQGELQDSARKNL 640 (1042)
Q Consensus 566 d~ekv~~LL~ip~~~dLe~Y~~--~r~e~~l~~LL~~i~~~~~kHsd~~--VL~~~a~al~-~L~~~~~~~l~~~a~~~l 640 (1042)
|.+++..|.++-..+.++.... -+.+.+|. .++++...|++.. +|-.+..-.+ -|+..+......+++---
T Consensus 3 ~~~r~~~l~eil~~l~i~~~~~iee~~DpQy~----av~~L~~~~g~~~~~~Lvi~NaLvSYqLsgkGEe~W~eFs~yf~ 78 (269)
T PRK13280 3 NEERVRELGEILRELGIEGALEIEERVDPQYK----AVENLVESLGEDLFAKLVIANALVSYQLSGKGEEWWWEFSKYFS 78 (269)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhccCHHHH----HHHHHHHHcCccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhc
Confidence 4556666666666666544321 12233443 3455666666532 1111111112 255554433333333211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHhc-CCCC----------CCchHHHHHHHHHhhcCCCCHHHHH
Q 001623 641 KDVEDKLIAKLKSAIKAVLDGDDEYSL-LVNLKRLYELQL-SKAV----------PIESLYEDLVMILHTFRNLDNEVVS 708 (1042)
Q Consensus 641 ~~L~d~lv~~l~~~~~~~~~~~~~~~l-l~~L~Rl~~l~~-~~~~----------~~~~l~~~l~~ll~~~~~l~~e~v~ 708 (1042)
..-.+++++.|..++..... --++ -.-++||..+.. ..++ .-..+++.|.++|.. +-+...|.
T Consensus 79 ~~~~~~~~~~~~~Fl~~s~~---nrrl~e~KikRi~r~~~fl~~L~l~~~~~~y~~l~~l~~~La~~L~s--~~~~KTiV 153 (269)
T PRK13280 79 EKGVEDIVEAYIEFLKNSKG---NRRLLEQKIKRIEKVEPFLESLTLLDLPLYYEDLEELLEQLAKILGA--KKESKTVV 153 (269)
T ss_pred ccCchhHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHHHhhhhccchhhhhHhhHHHHHHHHHHHhCC--CCCcceee
Confidence 22336667666666643321 0122 234677777631 1111 112344444455433 44567899
Q ss_pred HHHHHHHHHHhhccc
Q 001623 709 FLLLNLYLYLAWSLH 723 (1042)
Q Consensus 709 ~al~~~~~~l~W~l~ 723 (1042)
+|+++.+|...=...
T Consensus 154 FAvKM~~Ya~r~~~~ 168 (269)
T PRK13280 154 FAVKMFGYACRAAFG 168 (269)
T ss_pred eHHHHHHHHHHHhcc
Confidence 999999998875443
No 115
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.48 E-value=1.3e+02 Score=31.24 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCccccccchhh-hhhhhhcCCCCh
Q 001623 299 IQSLGVWILSYPSFFLQDLYL-KYLGWTLNDKSA 331 (1042)
Q Consensus 299 i~eLG~Wi~~yP~~FL~d~YL-KYlGW~L~Dk~~ 331 (1042)
+--|..|-.+-|-+++.++++ .|+||.|+=+.+
T Consensus 112 ~~~l~~~~rk~pV~~lp~~~~p~p~~~lLSfP~~ 145 (161)
T PF04420_consen 112 FFVLRFWYRKTPVFYLPKGWFPWPFEWLLSFPTA 145 (161)
T ss_dssp ----------------------------------
T ss_pred HhhhheeecCceEEEECchhhHHHHHHheecccC
Confidence 345667777889999999999 999999984443
No 116
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.42 E-value=1.3e+02 Score=36.65 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhc-cccchhHHHHH
Q 001623 355 GLFTERFSNRMIELA-DDIDVSVAVCA 380 (1042)
Q Consensus 355 ~~Ft~RFk~RlveM~-~D~D~~V~v~A 380 (1042)
.+||.||+-+|-.=+ .|.-..+|...
T Consensus 105 ~l~TNRl~Lnm~ak~~dn~~f~grL~m 131 (489)
T PF11853_consen 105 SLYTNRLRLNMKAKATDNVSFTGRLSM 131 (489)
T ss_pred ceeeeeeecccccccCCCeEEEEEEee
Confidence 468888875555444 34444444433
No 117
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=20.27 E-value=4.6e+02 Score=34.09 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=100.0
Q ss_pred eccccCCChhHHHHHHHHHHHHHhhCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHH
Q 001623 284 VHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSN 363 (1042)
Q Consensus 284 vhRyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~ 363 (1042)
-+=..|+.|..|...-+-+|.--...|+....+.++--+-=++.|..-.||+.++.++..+.+.=+--. .-...|-+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~ 319 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTE 319 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhH
Confidence 334689999999999999999999999999999999999999999999999999998887754211110 22333555
Q ss_pred HHhhhccccchhHHHHHHHHHHHHHhc-C--CCCCCChhhHHhhhcCCCHHHHHHHHHH
Q 001623 364 RMIELADDIDVSVAVCAIGLVKQLLRH-Q--LLPDDDLGPLYDLLIDDPPEIRRAIGEL 419 (1042)
Q Consensus 364 RlveM~~D~D~~V~v~AI~Ll~~l~~~-~--~L~~~d~~~V~~Lvfd~~~~Vr~AAg~f 419 (1042)
-+++...|.+..|+-........+... | ....+-...+..++=|..-.+|.|+|.=
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcc
Confidence 788888999999999999888888775 2 2233334455555557777777777754
Done!