BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001624
(1042 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 197/689 (28%), Positives = 302/689 (43%), Gaps = 71/689 (10%)
Query: 333 LSRLDLARCNLSGSIPT--SLAKLTQLVYLDLSSN--KFVGPIPSLHMSKNLTHLDLSNN 388
L+ LDL+R +LSG + T SL + L +L++SSN F G + +L LDLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 389 ALPGAISSTDW---EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
++ GA + W + L ++ + N ++G + S L+ L +++N F IP
Sbjct: 159 SISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 215
Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
+ S AL LD+S N+L G +I LK+L +SSN+ G + ++ L+ L
Sbjct: 216 LGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 273
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
E + F ++ +C L LDLS N G +P
Sbjct: 274 AE-------------NKFTGEIPDFLSGACD-----------TLTGLDLSGNHFYGAVPP 309
Query: 566 WVWEIGNGGLEYXXXXXXXXXXXQRPY-SISDLNLMTVLDLHSNQLQGNIPHPPRNA--- 621
+ G+ L + P ++ + + VLDL N+ G +P N
Sbjct: 310 F---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 622 -VLVDYSNNSFTSSI-PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
+ +D S+N+F+ I P N N L +N TG IP T+ L+ L LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN 739
LSG +P+ L +S L L L N L G + L+TL L+ N L G +P L+N
Sbjct: 427 LSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 740 CRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIA 799
C L + L NN++ P W+ + NSF G+I D L +D+
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLN 543
Query: 800 SNNFGGRVP-----------------QKCITSWKAMMSDEDEAQSN---FKDVHFELLTD 839
+N F G +P ++ + M E N F+ + E L
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 840 IFYQDVVTVT---WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
+ ++ +T + G +D S N G IP++IG + L+ LN N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
G IP +G+L+ L LDLS N L +IP ++ LT L+ ++LS+NNL G IP Q
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Query: 957 QSFSPTSFEGNEGLCGAPLNVCPPNSSKA 985
++F P F N GLCG PL C P+++
Sbjct: 724 ETFPPAKFLNNPGLCGYPLPRCDPSNADG 752
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 172/575 (29%), Positives = 253/575 (44%), Gaps = 70/575 (12%)
Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXX 272
L+ L +S LSG +++ L ++ + N P+P
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 279
Query: 273 XXXPETIL-QVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP-DSIGNL 330
P+ + TL LDLSGN P F S L +L LS NFSG LP D++ +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 331 KNLSRLDLARCNLSGSIPTSLAKLT-QLVYLDLSSNKFVGPI-PSL--HMSKNLTHLDLS 386
+ L LDL+ SG +P SL L+ L+ LDLSSN F GPI P+L + L L L
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
NN G I T + S LV + L N L+G+IP SL S+ L+ L L N G IP+
Sbjct: 400 NNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ- 457
Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
L+TL L N L G IP + NL + LS+N+L G + I RL NL L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAIL 516
Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNW 566
+LS N+ + N P++ L C+ L LDL+ N +G IP
Sbjct: 517 KLSNNSFSGN------IPAE-----LGDCR-----------SLIWLDLNTNLFNGTIPAA 554
Query: 567 VWE-----------------IGNGGLEYXXXXXXXXXXXQ--RPYSISDLNLMTVLDLHS 607
+++ I N G++ Q R ++ L+ ++ S
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 608 NQLQGNI-PHPPRNA--VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETI 664
G+ P N + +D S N + IP +IG SM + +L N I+G IP+ +
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEV 673
Query: 665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS-----VTF------ 713
+ L +LDLS+NKL G++P + ++ +L ++L N+LSG + TF
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 714 --PGNCGLQTLDLNENQLGGTVPKSLANCRKLEVL 746
PG CG + + G ++ R+LE L
Sbjct: 733 NNPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENL 767
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 201/467 (43%), Gaps = 67/467 (14%)
Query: 139 FAGQIPIQVS-AMTRLVTLDLSSSYSFGG------------PLKLENPNLSGLL--QNLA 183
F G+IP +S A L LDLS ++ +G L L + N SG L L
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 184 ELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAK--LQSLSVIC 241
++R L + ++ + E ++L++L L L LSS SGPI P+L + +L +
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 242 LDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQVHTLQTLDLSGNSLLRGSLP 301
L N + +P L++ P ++ + L+ L L N +L G +P
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIP 456
Query: 302 -DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
+ +L TL+L + + +G +P + N NL+ + L+ L+G IP + +L L L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 361 DLSSNKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV--------YVDLR 411
LS+N F G IP+ L ++L LDL+ N G I + ++ + YV ++
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 412 NNALN-------------GSIPRSLFSIPMLQQLLLANNKFGGPI-PEFSNASYSALDTL 457
N+ + G L + + + +GG P F N ++ L
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN--GSMMFL 634
Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
D+S N L G IP I + L IL L N ++G++ + LR L L+LS N L
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKL---- 689
Query: 518 SGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
D P + L + L +DLS+N +SG IP
Sbjct: 690 --DGRIPQAMSALTM----------------LTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 197/689 (28%), Positives = 302/689 (43%), Gaps = 71/689 (10%)
Query: 333 LSRLDLARCNLSGSIPT--SLAKLTQLVYLDLSSN--KFVGPIPSLHMSKNLTHLDLSNN 388
L+ LDL+R +LSG + T SL + L +L++SSN F G + +L LDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 389 ALPGAISSTDW---EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
++ GA + W + L ++ + N ++G + S L+ L +++N F IP
Sbjct: 162 SISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 218
Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
+ S AL LD+S N+L G +I LK+L +SSN+ G + ++ L+ L
Sbjct: 219 LGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
E + F ++ +C L LDLS N G +P
Sbjct: 277 AE-------------NKFTGEIPDFLSGACD-----------TLTGLDLSGNHFYGAVPP 312
Query: 566 WVWEIGNGGLEYXXXXXXXXXXXQRPY-SISDLNLMTVLDLHSNQLQGNIPHPPRNA--- 621
+ G+ L + P ++ + + VLDL N+ G +P N
Sbjct: 313 F---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 622 -VLVDYSNNSFTSSI-PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
+ +D S+N+F+ I P N N L +N TG IP T+ L+ L LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN 739
LSG +P+ L +S L L L N L G + L+TL L+ N L G +P L+N
Sbjct: 430 LSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 740 CRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIA 799
C L + L NN++ P W+ + NSF G+I D L +D+
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLN 546
Query: 800 SNNFGGRVP-----------------QKCITSWKAMMSDEDEAQSN---FKDVHFELLTD 839
+N F G +P ++ + M E N F+ + E L
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 840 IFYQDVVTVT---WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
+ ++ +T + G +D S N G IP++IG + L+ LN N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
G IP +G+L+ L LDLS N L +IP ++ LT L+ ++LS+NNL G IP Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Query: 957 QSFSPTSFEGNEGLCGAPLNVCPPNSSKA 985
++F P F N GLCG PL C P+++
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADG 755
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 161/525 (30%), Positives = 237/525 (45%), Gaps = 57/525 (10%)
Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXX 272
L+ L +S LSG +++ L ++ + N P+P
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282
Query: 273 XXXPETIL-QVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP-DSIGNL 330
P+ + TL LDLSGN P F S L +L LS NFSG LP D++ +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 331 KNLSRLDLARCNLSGSIPTSLAKLT-QLVYLDLSSNKFVGPI-PSL--HMSKNLTHLDLS 386
+ L LDL+ SG +P SL L+ L+ LDLSSN F GPI P+L + L L L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
NN G I T + S LV + L N L+G+IP SL S+ L+ L L N G IP+
Sbjct: 403 NNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ- 460
Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
L+TL L N L G IP + NL + LS+N+L G + I RL NL L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAIL 519
Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNW 566
+LS N+ + N P++ L C+ L LDL+ N +G IP
Sbjct: 520 KLSNNSFSGN------IPAE-----LGDCR-----------SLIWLDLNTNLFNGTIPAA 557
Query: 567 VWE-----------------IGNGGLEYXXXXXXXXXXXQ--RPYSISDLNLMTVLDLHS 607
+++ I N G++ Q R ++ L+ ++ S
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 608 NQLQGNI-PHPPRNA--VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETI 664
G+ P N + +D S N + IP +IG SM + +L N I+G IP+ +
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEV 676
Query: 665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
+ L +LDLS+NKL G++P + ++ +L ++L N+LSG +
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPI 720
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 201/467 (43%), Gaps = 67/467 (14%)
Query: 139 FAGQIPIQVS-AMTRLVTLDLSSSYSFGG------------PLKLENPNLSGLL--QNLA 183
F G+IP +S A L LDLS ++ +G L L + N SG L L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 184 ELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAK--LQSLSVIC 241
++R L + ++ + E ++L++L L L LSS SGPI P+L + +L +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 242 LDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQVHTLQTLDLSGNSLLRGSLP 301
L N + +P L++ P ++ + L+ L L N +L G +P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIP 459
Query: 302 -DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
+ +L TL+L + + +G +P + N NL+ + L+ L+G IP + +L L L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 361 DLSSNKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV--------YVDLR 411
LS+N F G IP+ L ++L LDL+ N G I + ++ + YV ++
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 412 NNALN-------------GSIPRSLFSIPMLQQLLLANNKFGGPI-PEFSNASYSALDTL 457
N+ + G L + + + +GG P F N ++ L
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN--GSMMFL 637
Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
D+S N L G IP I + L IL L N ++G++ + LR L L+LS N L
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKL---- 692
Query: 518 SGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
D P + L + L +DLS+N +SG IP
Sbjct: 693 --DGRIPQAMSALTM----------------LTEIDLSNNNLSGPIP 721
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEF 254
L +L LSS L G I +++ L L+ I L N+LS P+PE
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 40/244 (16%)
Query: 223 LSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQV 282
L GPI P++AKL L + + ++S +P+FL+ Q+
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------------------------QI 124
Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLM---LSYANFSGVLPDSIGNLKNL-SRLDL 338
TL TLD S N+ L G+LP P SSL L+ SG +PDS G+ L + + +
Sbjct: 125 KTLVTLDFSYNA-LSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISST 397
+R L+G IP + A L L ++DLS N G L S KN + L+ N+L +
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTL 457
NL +DLRNN + G++P+ L + L L ++ N G IP+ N L
Sbjct: 241 GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-----LQRF 293
Query: 458 DLSA 461
D+SA
Sbjct: 294 DVSA 297
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLS 334
P ++ + L L + G + L G +P K + L L +++ N SG +PD + +K L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLH--MSKNLTHLDLSNNALPG 392
LD + LSG++P S++ L LV + N+ G IP + SK T + +S N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYS 452
I T + +L NL +VDL N L G S Q++ LA N + + +
Sbjct: 189 KIPPT-FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--K 244
Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV-QLAAIQRL 500
L+ LDL NR+ G +P + +LK L L +S N L G + Q +QR
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 36/257 (14%)
Query: 727 NQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCREN 786
N L G +P ++A +L L + + + P +L I N+ G++ +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PS 144
Query: 787 DDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVV 846
S P L + N G +P D S + +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIP--------------DSYGS--------------FSKLF 176
Query: 847 TVTWKGREMELVKILSIFTS-----IDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGP 901
T R KI F + +D SRN +G G K+ ++ ++N+
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 902 IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSP 961
+ +G + L LDL N + +P L L FL LN+S NNL G IP LQ F
Sbjct: 237 L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 962 TSFEGNEGLCGAPLNVC 978
+++ N+ LCG+PL C
Sbjct: 296 SAYANNKCLCGSPLPAC 312
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 8/195 (4%)
Query: 591 PYSISDLNLMTVLDLHSNQLQGNIPH---PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI 647
P +I+ L + L + + G IP + V +D+S N+ + ++P I + N +
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL-V 152
Query: 648 FFSLSSNSITGVIPETICR-AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
+ N I+G IP++ +K + +S N+L+GK+P ++ L ++L N L
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLE 210
Query: 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXX 766
G SV F + Q + L +N L + K + + L LDL NN+I T P L +
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 767 XXXXXXXXNSFYGSI 781
N+ G I
Sbjct: 270 LHSLNVSFNNLCGEI 284
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 462 NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS 521
N L GPIP +I +L L L ++ ++G + + +++ L+ L+ SYN L+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALS------G 139
Query: 522 SFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXX 581
+ P P++ S L + N+ISG IP+ L
Sbjct: 140 TLP----------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSK--LFTSMTI 181
Query: 582 XXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIP---HPPRNAVLVDYSNNSFTSSIPGD 638
+ P + ++LNL V DL N L+G+ +N + + NS + G
Sbjct: 182 SRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK 239
Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMP 685
+G S N L +N I G +P+ + + K+L L++S N L G++P
Sbjct: 240 VGLSKNLN-GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 901 PIPSTIGNLQQLESLDLS-MNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
PIPS++ NL L L + +N+L IP +A LT L L ++H N+ G IP
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 206/524 (39%), Gaps = 76/524 (14%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 160
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
S +P + LT L +LDLSSNK + + LH L N PGA
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
L+ LRNN + ++ ++ I L L + G EF N
Sbjct: 221 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 266
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
L+ D SA LEG ++I E + L L+G + L L N+ L ++
Sbjct: 267 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDGIIDL--FNCLTNVSSFSLV--SV 316
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
T+ D S+ + L L +CK P LK +S L L
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
DLS N +S + + G L+Y + L + LD HSN Q
Sbjct: 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 434
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
++ RN + +D S+ + G I N ++ ++ NS +P+
Sbjct: 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLN 725
+ L LDLS +L PT +S L VLN+ N+ TFP C LQ LD +
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 550
Query: 726 ENQLGGTVPKSLANC-RKLEVLDLGNNKI-----RDTFPCWLKN 763
N + + + L + L L+L N +F W+K+
Sbjct: 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 23/84 (27%)
Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
+L+ L ++GNS F +N LPD L+NL+ LDL++C L
Sbjct: 470 SLEVLKMAGNS--------FQEN---------------FLPDIFTELRNLTFLDLSQCQL 506
Query: 344 SGSIPTSLAKLTQLVYLDLSSNKF 367
PT+ L+ L L++S N F
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 885 LKSLYGLNFSQNAFG-GPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
L SL L + N+F +P L+ L LDLS L P +L+ L VLN+SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 944 NNL 946
NN
Sbjct: 528 NNF 530
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 882 IGRLKSLYGLNFSQNAFGG-PIPSTIGNLQQLESLDLSMNHL 922
IG LK+L LN + N +P NL LE LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 105/474 (22%), Positives = 204/474 (43%), Gaps = 41/474 (8%)
Query: 297 RGSLPDFPKNSSLRTLMLSYAN--FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKL 354
+ L PK+ S +T +L+ + S + I +L L R+ + N + S+ K
Sbjct: 9 KNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKL-RILIISHNRIQYLDISVFKF 67
Query: 355 TQ-LVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
Q L YLDLS NK V S H + NL HLDLS NA ++ ++S L ++ L
Sbjct: 68 NQELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 414 ALNGSIPRSLFSIPMLQQLLLANNKFG-GPIPE-FSNASYSALDTLDLSANRLEGPIPMS 471
L S + + + + LL+ +G PE + + +L + + + +S
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185
Query: 472 I-----FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
+ EL N+K +L NK + L+ + +L+ +L +NLT+N + ++++ S
Sbjct: 186 VKTVANLELSNIKC-VLEDNK--CSYFLSILAKLQTNPKL----SNLTLN-NIETTWNSF 237
Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXX 586
+R L+L + ++ +S+ ++ G++ ++ L+
Sbjct: 238 IRILQLV-----------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 587 XXQRPYS-----ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGN 641
P S S++N+ + + P + +D+SNN T ++ + G+
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 642 SMNF-TIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL 700
T+ ++ I E + K L LD+S N +S + L LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 701 RGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
N L+ T+ P ++ LDL+ N++ ++PK + L+ L++ +N+++
Sbjct: 407 SSNILTDTIFRCLPPR--IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK 457
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 888 LYGLNFSQNAFGG-PIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVL 939
L L+ S NAF PI GN+ QL+ L LS HL + +A+L VL
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 137/524 (26%), Positives = 205/524 (39%), Gaps = 76/524 (14%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 136
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
S +P + LT L +LDLSSNK + + LH L N PGA
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
L+ LRNN + ++ ++ I L L + G EF N
Sbjct: 197 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 242
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
L+ D SA LEG ++I E + L L+ + L L N+ L ++
Sbjct: 243 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDDIIDL--FNCLTNVSSFSLV--SV 292
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
T+ D S+ + L L +CK P LK +S L L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
DLS N +S + + G L+Y + L + LD HSN Q
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 410
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
++ RN + +D S+ + G I N ++ ++ NS +P+
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLN 725
+ L LDLS +L PT +S L VLN+ N+ TFP C LQ LD +
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 526
Query: 726 ENQLGGTVPKSLANC-RKLEVLDLGNNKI-----RDTFPCWLKN 763
N + + + L + L L+L N +F W+K+
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 23/84 (27%)
Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
+L+ L ++GNS F +N LPD L+NL+ LDL++C L
Sbjct: 446 SLEVLKMAGNS--------FQEN---------------FLPDIFTELRNLTFLDLSQCQL 482
Query: 344 SGSIPTSLAKLTQLVYLDLSSNKF 367
PT+ L+ L L++S N F
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 885 LKSLYGLNFSQNAFG-GPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
L SL L + N+F +P L+ L LDLS L P +L+ L VLN+SH
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 944 NNL 946
NN
Sbjct: 504 NNF 506
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 882 IGRLKSLYGLNFSQNAFGG-PIPSTIGNLQQLESLDLSMNHL 922
IG LK+L LN + N +P NL LE LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 29/302 (9%)
Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
+++ LDLS + + F L+ L L+Y + + ++ L NL L+L+ NL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NL 325
Query: 344 SGSIPTS-LAKLTQLVYLDLSSNKF-VGPIPSLHMSKNLTHLDLSNNALP---------- 391
G + +S L ++ Y+DL N + + + L LDL +NAL
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 392 ------GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
++ +NL+++ N N I L +P LQ L+L N+F +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLS-ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 446 FSNASYSALDTLDLSANRL----EGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRL 500
+ + +L+ L L N L E + +FE L +L++L L+ N LN ++ L
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHL 503
Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
L L L+ N LTV + D P+ + L ++ +L + PN L LD++ N+
Sbjct: 504 TALRGLSLNSNRLTVLSHND--LPANLEILDISRNQL-LAPNPDVFVSLSVLDITHNKFI 560
Query: 561 GE 562
E
Sbjct: 561 CE 562
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 44/291 (15%)
Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNK 366
SS+R L LS+ + LK+L L+LA ++ + L L L+LS N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN- 324
Query: 367 FVGPIPS--LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF 424
+G + S + + ++DL N + I ++ L L +DLR+NAL ++
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 425 SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG-PIPMSIFELKNLKILML 483
IP + + L+ NK +P+ + + + + LS NRLE I + + +L+IL+L
Sbjct: 379 FIPSIPDIFLSGNKLV-TLPKINLTA----NLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 484 SSNKLNG---------------------TVQLA--------AIQRLRNLIRLELSYNNLT 514
+ N+ + +QLA + L +L L L++N L
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
G S + +R L L S +L V+ + + L LD+S NQ+ P+
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD 544
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 64/323 (19%)
Query: 475 LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
L NL+IL L S+K+ + A Q L +L L L + L+ D F + RL
Sbjct: 72 LPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 535 CK-----LKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQ 589
K L + P+ + L ++D S NQI + + + L +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF------------ 178
Query: 590 RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVL--VDYSNNSFTSSIPGDIGNSMNFTI 647
+S++ +L + + + G +P RN VL +D S N +T I G+ N+++ +
Sbjct: 179 --FSLAANSLYSRVSVD----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 648 FFSL-------------------SSNSITGVIPETICRA------------------KYL 670
FSL N+ G+ ++ K L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292
Query: 671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLG 730
VL+L+ NK++ + D L VLNL N L S F G + +DL +N +
Sbjct: 293 KVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 731 GTVPKSLANCRKLEVLDLGNNKI 753
++ KL+ LDL +N +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 454 LDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL-SYN 511
L+TL+L NRL IP F L LK L L +N + ++ A R+ +L RL+L
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
L+ + G S +R L LA C L+ IPNL KL LDLS N +S P
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 31/230 (13%)
Query: 288 LDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSI 347
L+L N + + F L L LS + + + L NL+ L+L L+
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 348 PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALPGAISSTDWEHLSNL 405
+ L++L L L +N + IPS ++ +L LDL IS +E LSNL
Sbjct: 129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 406 VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLE 465
Y++L +L IP L L+ LD LDLS N L
Sbjct: 188 RYLNLAMC--------NLREIPNLTPLI-------------------KLDELDLSGNHLS 220
Query: 466 GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
P S L +L+ L + +++ ++ A L++L+ + L++NNLT+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 329 NLKNLSRLDLARCNLS--GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLS 386
+L +L LDL+R LS G S T L YLDLS N + + + L HLD
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
++ L + + L NL+Y+D+ + + + L+ L +A N F
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
L LDLS +LE P + L +L++L ++SN+L +V RL +L ++
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523
Query: 507 ELSYN 511
L N
Sbjct: 524 WLHTN 528
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 127/488 (26%), Positives = 189/488 (38%), Gaps = 66/488 (13%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 136
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
S +P + LT L +LDLSSNK + + LH L N PGA
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
L+ LRNN + ++ ++ I L L + G EF N
Sbjct: 197 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 242
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
L+ D SA LEG ++I E + L L+ + L L N+ L ++
Sbjct: 243 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDDIIDL--FNCLTNVSSFSLV--SV 292
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
T+ D S+ + L L +CK P LK +S L L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
DLS N +S + + G L+Y + L + LD HSN Q
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 410
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
++ RN + +D S+ + G I N ++ ++ NS +P+
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNEN 727
+ L LDLS +L PT +S L VLN+ N L F LQ + L+ N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Query: 728 QLGGTVPK 735
+ P+
Sbjct: 529 PWDCSCPR 536
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
+L+ L ++GNS F +N LPD L+NL+ LDL++C L
Sbjct: 446 SLEVLKMAGNS--------FQEN---------------FLPDIFTELRNLTFLDLSQCQL 482
Query: 344 SGSIPTSLAKLTQLVYLDLSSNK 366
PT+ L+ L L+++SN+
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQ 505
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 882 IGRLKSLYGLNFSQNAFGG-PIPSTIGNLQQLESLDLSMNHL 922
IG LK+L LN + N +P NL LE LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 284 TLQTLDLSGNSLLRGSLPDFP--KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
++Q L L+ N LL S F K ++L L LSY N V S L +L L L
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP----------SLHMSKNLTHLDLSNNALP 391
N+ P S L+ L YL L + S K L +L++ +N +P
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIP 342
Query: 392 GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASY 451
S+T + L +L Y+ S+ ++ S+ L F + ++
Sbjct: 343 STKSNT-FTGLVSLKYL---------SLSKTFTSLQTLTN------------ETFVSLAH 380
Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
S L TL+L+ N + + L L+IL L N++ + + LRN+ + LSYN
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 512 N-LTVNASGDSSFPSQVRTL--RLASCKLKVIPN-LKSQSKLFNLDLSDNQIS 560
L ++ S + PS R + R+A + + P+ + L LDLS+N I+
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 633 SSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
+ IP D+ + N T+ +L+ N + + P R L +LD N +S K+ L ++
Sbjct: 17 THIPDDLPS--NITVL-NLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQIL 72
Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752
+L VLNL+ N LS TF L LDL N + N + L LDL +N
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 753 IRDT 756
+ T
Sbjct: 133 LSST 136
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 57/264 (21%)
Query: 323 LPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL-------- 374
+PD + + N++ L+L L PT+ + +QL LD N P L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 375 -------HMSK----------NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
+S+ NLT LDL +N++ I S +++ NL+ +DL +N L+
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSI-HKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 418 SIPRSLFSIPMLQQLLLANNK-FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELK 476
+ + + LQ+LLLA NK E S+L LDLS+N L+ P +
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 477 NLKILMLSSNKLNGTV---------------------QLAAIQ-------RLRNLIRLEL 508
L L+L++ +LN + QL A + NL +L+L
Sbjct: 196 KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 509 SYNNLTVNASGDSSFPSQVRTLRL 532
SYNNL +G S+ +R L L
Sbjct: 256 SYNNLHDVGNGSFSYLPSLRYLSL 279
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 10/221 (4%)
Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSR 335
PE + L+ L+L N L + S F ++L L L + + + N KNL +
Sbjct: 66 PELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIK 125
Query: 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS----KNLTHLDLSNNALP 391
LDL+ LS + + +L L L L+ NK + + S + +L LDLS+N L
Sbjct: 126 LDLSHNGLSSTKLGTGVQLENLQELLLAKNKILA-LRSEELEFLGNSSLRKLDLSSNPL- 183
Query: 392 GAISSTDWEHLSNLVYVDLRNNALNGSIPRSL---FSIPMLQQLLLANNK-FGGPIPEFS 447
S ++ + L + L N LN + L S +Q L LANN+ FS
Sbjct: 184 KEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFS 243
Query: 448 NASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL 488
++ L LDLS N L S L +L+ L L N +
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 282 VHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
++ L++L++ N L+ S F +SL L L N + + +++ +L L L L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPI-PSLHMSKNLTHLDLSNNALPGAISSTDWE 400
N++ S +L +L L++S ++ + P+ NLT L +++ L A+
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVR 245
Query: 401 HLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLS 460
HL L +++L N ++ L + LQ++ L + P ++ + L L++S
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVS 304
Query: 461 ANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLR 501
N+L + S+F + NL+ L+L SN L +L + R R
Sbjct: 305 GNQLTT-LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR 345
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 130/344 (37%), Gaps = 43/344 (12%)
Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
+DL N + S P L++L L N P N ++ L TL L +NRL+
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRSNRLK-L 94
Query: 468 IPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
IP+ +F L NL L +S NK+ + Q L NL LE+ N+L + S +
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 527 VRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXX 584
+ L L C L IP L L L L I+
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA----------------------- 190
Query: 585 XXXXQRPYSISDLNLMTVLDL-HSNQLQGNIPHPPRNAVLVDYS-NNSFTSSIPGDIGNS 642
R YS L + VL++ H L P+ L S + +++P
Sbjct: 191 ----IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRG 702
+ + F +LS N I+ + + L + L +L+ P + + L VLN+ G
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSG 305
Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVL 746
N L+ F L+TL L+ N L +CR L V
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA-------CDCRLLWVF 342
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 381 THLDLSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
T L L++N L G ISS + L +LV ++L+ N L G P + +Q+L L NK
Sbjct: 32 TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK- 89
Query: 440 GGPIPEFSNASY---SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
I E SN + L TL+L N++ +P S L +L L L+SN N LA
Sbjct: 90 ---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 443 IPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
P + + +D + IP+ EL +L+ N+L RL +
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL------LLNDNELGRISSDGLFGRLPH 55
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQIS 560
L++LEL N LT S ++ L+L K+K I N +L L+L DNQIS
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 561 GEIP 564
+P
Sbjct: 116 CVMP 119
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%)
Query: 861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
L ++ RN G P + L +N L QL++L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 921 HLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNV 977
+S +P +L L+ LNL+ N N ++ + S G CGAP V
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 287 TLDLSGNSLLRGSLPDFPKNSSLRT--LMLSYANFSGVLPDSI-GNLKNLSRLDLARCNL 343
T+D +G RG L + P++ L T L+L+ + D + G L +L +L+L R L
Sbjct: 12 TVDCTG----RG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 344 SGSIPTSLAKLTQLVYLDLSSNK--------FVGPIPSLHMSKNLTHLDLS-NNALPGAI 394
+G P + + + L L NK F+G LH K L D + +PG+
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLG----LHQLKTLNLYDNQISCVMPGS- 121
Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFS 425
+EHL++L ++L +N N + + F+
Sbjct: 122 ----FEHLNSLTSLNLASNPFNCNCHLAWFA 148
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 675 LSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP 734
+S++ L G++P L+K L L+ N L+G F G +Q L L EN++
Sbjct: 44 ISSDGLFGRLPH-LVK-------LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 735 KSLANCRKLEVLDLGNNKIRDTFP 758
K +L+ L+L +N+I P
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 117
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL FG +
Sbjct: 118 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----SFGNQV 166
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
+ A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L
Sbjct: 167 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 220
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
NL L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 221 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 256
Query: 562 EIP 564
P
Sbjct: 257 LAP 259
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 46/217 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLS----------------GSIPTSL---AKLTQLVYLDLSSN 365
D + NL NL+RL+L+ +S G+ T L A LT L LD+SSN
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 366 KFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNLV 406
K V I L NL L +NN + G +++ D L+NL
Sbjct: 187 K-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 245
Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 246 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLED 300
Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 301 ISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 335
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 118
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL FG +
Sbjct: 119 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----SFGNQV 167
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
+ A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 221
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
NL L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 222 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 257
Query: 562 EIP 564
P
Sbjct: 258 LAP 260
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 46/217 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLS----------------GSIPTSL---AKLTQLVYLDLSSN 365
D + NL NL+RL+L+ +S G+ T L A LT L LD+SSN
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 366 KFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNLV 406
K V I L NL L +NN + G +++ D L+NL
Sbjct: 188 K-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 246
Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLED 301
Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 302 ISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL ++N+
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
P A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
L L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 95/218 (43%), Gaps = 47/218 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTS--------------------LAKLTQLVYLDLSS 364
D + NL NL+RL+L+ +S S LA LT L LD+SS
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 365 NKFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNL 405
NK V I L NL L +NN + G +++ D L+NL
Sbjct: 183 NK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 406 VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLE 465
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 242 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLE 296
Query: 466 GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 297 DISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS--LSSNSITGVIPETICRAKYLLVLDLSN 677
N +++SNN T DI N T +++N I + P + L L L N
Sbjct: 64 NLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
N+++ P +K L L L N++S +++ G LQ L + NQ+ P L
Sbjct: 117 NQITDIDP---LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--L 169
Query: 738 ANCRKLEVLDLGNNKIRD 755
AN LE LD+ +NK+ D
Sbjct: 170 ANLTTLERLDISSNKVSD 187
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
L SL L+FS N P + NL LE LD+S N +SD I + LA LT L L ++N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNN 205
Query: 945 NLEGNIPVSTQLQSFSPTSFEGNE 968
+ P+ L + S GN+
Sbjct: 206 QISDITPLGI-LTNLDELSLNGNQ 228
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL FG +
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----NFGNQV 162
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
+ A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 216
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
NL L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 217 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 562 EIP 564
P
Sbjct: 253 LAP 255
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 46/217 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLS----------------GSIPTSL---AKLTQLVYLDLSSN 365
D + NL NL+RL+L+ +S G+ T L A LT L LD+SSN
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 366 KFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNLV 406
K V I L NL L +NN + G +++ D L+NL
Sbjct: 183 K-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 241
Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 242 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLED 296
Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 297 ISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL ++N+
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
P A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
L L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 95/218 (43%), Gaps = 47/218 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTS--------------------LAKLTQLVYLDLSS 364
D + NL NL+RL+L+ +S S LA LT L LD+SS
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 365 NKFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNL 405
NK V I L NL L +NN + G +++ D L+NL
Sbjct: 183 NK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 406 VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLE 465
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 242 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLE 296
Query: 466 GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 297 DISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS--LSSNSITGVIPETICRAKYLLVLDLSN 677
N +++SNN T DI N T +++N I + P + L L L N
Sbjct: 64 NLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
N+++ P +K L L L N++S +++ G LQ L + NQ+ P L
Sbjct: 117 NQITDIDP---LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--L 169
Query: 738 ANCRKLEVLDLGNNKIRD 755
AN LE LD+ +NK+ D
Sbjct: 170 ANLTTLERLDISSNKVSD 187
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
L SL L+FS N P + NL LE LD+S N +SD I + LA LT L L ++N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNN 205
Query: 945 NLEGNIPVSTQLQSFSPTSFEGNE 968
+ P+ L + S GN+
Sbjct: 206 QISDITPLGI-LTNLDELSLNGNQ 228
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL FG +
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----NFGNQV 162
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
+ A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 216
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
NL L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 217 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 562 EIP 564
P
Sbjct: 253 LAP 255
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 46/217 (21%)
Query: 325 DSIGNLKNLSRLDLARCNLS----------------GSIPTSL---AKLTQLVYLDLSSN 365
D + NL NL+RL+L+ +S G+ T L A LT L LD+SSN
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 366 KFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNLV 406
K V I L NL L +NN + G +++ D L+NL
Sbjct: 183 K-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 241
Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 242 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLED 296
Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 297 ISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
D + L NL++++ + L+ P L LT+LV + +++N+ P +++ NLT L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
L NN I+ D ++L+NL ++L +N + S +L + LQQL ++N+
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
P A+ + L+ LD+S+N++ +S+ +L NL+ L+ ++N+++ L L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
L L L+ N +LK I L S + L +LDL++NQIS
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
P
Sbjct: 255 AP 256
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 47/218 (21%)
Query: 325 DSIGNLKNLSRLDLA-----------------RCNLSGSIPTSL---AKLTQLVYLDLSS 364
D + NL NL+RL+L+ + N S + T L A LT L LD+SS
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 182
Query: 365 NKFVGPIPSLHMSKNLTHLDLSNNALP-----GAISSTD--------------WEHLSNL 405
NK V I L NL L +NN + G +++ D L+NL
Sbjct: 183 NK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 406 VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLE 465
+DL NN ++ P L + L +L L N+ P A +AL L+L+ N+LE
Sbjct: 242 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLE 296
Query: 466 GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
P+S LKNL L L N ++ ++++ +L+ L
Sbjct: 297 DISPIS--NLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
L SL LNFS N P + NL LE LD+S N +SD I + LA LT L L ++N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNN 205
Query: 945 NLEGNIPVSTQLQSFSPTSFEGNE 968
+ P+ L + S GN+
Sbjct: 206 QISDITPLGI-LTNLDELSLNGNQ 228
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS--LSSNSITGVIPETICRAKYLLVLDLSN 677
N +++SNN T DI N T +++N I + P + L L L N
Sbjct: 64 NLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
N+++ P +K L L L N++S +++ G LQ L+ + NQ+ P L
Sbjct: 117 NQITDIDP---LKNLTNLNRLELSSNTISDISALS--GLTSLQQLNFSSNQVTDLKP--L 169
Query: 738 ANCRKLEVLDLGNNKIRD 755
AN LE LD+ +NK+ D
Sbjct: 170 ANLTTLERLDISSNKVSD 187
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 392 GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN-AS 450
G + ++L+NL+ ++L++N + P L ++ + +L L+ G P+ S A
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELS----GNPLKNVSAIAG 111
Query: 451 YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
++ TLDL++ ++ P++ L NL++L L N++ LA + L+ LS
Sbjct: 112 LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPLAGLTNLQ-----YLSI 164
Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
N VN + S++ TLR K+ I L S L + L DNQIS P
Sbjct: 165 GNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSP 218
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDL 385
+I L+++ LDL ++ P + Q++YLDL+ + P+ L NL +L +
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL---TNLQYLSI 164
Query: 386 SNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG--GPI 443
NN + T +LS L + +N ++ P L S+P L ++ L +N+ P+
Sbjct: 165 GNNQVNDL---TPLANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSPL 219
Query: 444 PEFSN 448
SN
Sbjct: 220 ANLSN 224
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 59/328 (17%)
Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
+ +N+ G+ I + Y L L +G ++ ++ NL G LSG
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC----NLDGAVLSGNF- 124
Query: 711 VTFPGNCGLQTLDLNENQLGGTVPKSL-ANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXX 769
F L+ L L +N + P S N R+ VLDL NK++ L N
Sbjct: 125 --FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Query: 770 XXXXXNSFYGSITCRENDDSW------------PMLQIVDIASNNFGGRVPQKCITSWKA 817
+S IT ++ ++ W + +D++ N F + ++ +
Sbjct: 183 TLLRLSS----ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Query: 818 ------MMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVK------------ 859
++S+ S+F +F +D T+KG E VK
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNF--------KDPDNFTFKGLEASGVKTCDLSKSKIFAL 290
Query: 860 ---ILSIFTSID---FSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLE 913
+ S FT ++ ++N + L L LN SQN G NL +LE
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 914 SLDLSMNH---LSDQIPIQLANLTFLSV 938
LDLS NH L DQ + L NL L++
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELAL 378
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 117/312 (37%), Gaps = 78/312 (25%)
Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTS--LAKLTQLVYLDLSS 364
SSL L L Y F + + L NL L L +CNL G++ + LT L L L
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 365 N--KFVGPIPSLHMSKNLTHLDLSNNALP--------------------GAISSTD---- 398
N K + P + LDL+ N + +I+ D
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 399 ---WEHLSN------LVYVDLRNNALNGSIPRSLFSI---PMLQQLLLAN-----NKFGG 441
WE N + +DL N S+ + F +Q L+L+N + FG
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 442 ---PIPE---FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN------ 489
P+ F S + T DLS +++ + +L+ L L+ N++N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 490 -----------------GTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPS--QVRTL 530
G++ + L L L+LSYN+ + A GD SF ++ L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH--IRALGDQSFLGLPNLKEL 376
Query: 531 RLASCKLKVIPN 542
L + +LK +P+
Sbjct: 377 ALDTNQLKSVPD 388
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 27/176 (15%)
Query: 284 TLQTLDLSGNSL---LRGSLPDFPKNSSLRTLMLS----------YANFSGVLPDSIGNL 330
++ TLDLSGN + D + +++L+LS + NF PD+
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD--PDNF-TF 269
Query: 331 KNLSRLDLARCNLSGS-----IPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHL-- 383
K L + C+LS S + + + T L L L+ N+ + I + LTHL
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLK 327
Query: 384 -DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
+LS N L G+I S +E+L L +DL N + +S +P L++L L N+
Sbjct: 328 LNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
DLS + + + S + H ++L + L N +N + + + L +L L+ N F G I
Sbjct: 281 DLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSI 338
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
+ L+ LDLS N + S L NLK L L +N+L +V RL +L
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSL 397
Query: 504 IRLELSYN 511
++ L N
Sbjct: 398 QKIWLHTN 405
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
++L N+ Y+ L N L+ +L + L L+L N+ +P + L L L
Sbjct: 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVL 116
Query: 460 SANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
N+L+ +P +F+ L NL L L+ N+L ++ +L NL L+LSYN L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 519 GDSSFPSQVRTLRLASCKLKVIPN 542
G +Q++ LRL +LK +P+
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPD 198
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 281 QVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSI-GNLKNLSRLD 337
++ L L L+GN L SLP+ F K ++L+ L+L LPD + L NL+ L+
Sbjct: 83 ELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139
Query: 338 LARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISS 396
LA L KLT L LDLS N+ P L L L N L ++
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Query: 397 TDWEHLSNLVYVDLRNNALNGSIP 420
++ L++L Y+ L +N + + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 9/245 (3%)
Query: 294 SLLRGSLPDFPKNS--SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL 351
S++R L FP L++L L+ G + L +LS LDL+R LS S S
Sbjct: 313 SIIRCQLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 352 AKL--TQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
+ L L +LDLS N + + + L HLD ++ L + + L L+Y+D
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430
Query: 410 LRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIP 469
+ + L L +A N F A+ + L LDLS +LE I
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QIS 489
Query: 470 MSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVR 528
+F+ L L++L +S N L + + +L +L L+ S+N + + FP +
Sbjct: 490 WGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548
Query: 529 TLRLA 533
L
Sbjct: 549 FFNLT 553
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 383 LDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGP 442
+DLS N L + S + + S L ++DL + ++ + L L+L G P
Sbjct: 37 IDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT----GNP 91
Query: 443 IPEFSNASYSALDTLD---LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
I FS S+S L +L+ +L I +L LK L ++ N ++ A
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 500 LRNLIRLELSYNNLTVNASGDSSF 523
L NL+ ++LSYN + D F
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQF 175
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 23/227 (10%)
Query: 417 GSIPRSLFSIPMLQQLLLANN--KFGGPIPEFSNASYSALDTLDLSANRLEGPIPMS--I 472
GSI ++P L L L+ N F G +S+ ++L LDLS N G I MS
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCC-SYSDLGTNSLRHLDLSFN---GAIIMSANF 395
Query: 473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRL 532
L+ L+ L + L + +A L L+ L++SY N ++ G + + TL++
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 533 A--SCKLKVIPNL-KSQSKLFNLDLSD---NQISGEIPNWVWEIGNGGLEYXXXXXXXXX 586
A S K + N+ + + L LDLS QIS + + + + + +
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 587 XXQRPYSISDLNLMTVLDLHSNQLQ---GNIPHPPRNAVLVDYSNNS 630
+ YS+S LD N+++ G + H P++ + +NNS
Sbjct: 516 HYNQLYSLS------TLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 9/245 (3%)
Query: 294 SLLRGSLPDFPKNS--SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL 351
S++R L FP L++L L+ G + L +LS LDL+R LS S S
Sbjct: 308 SIIRCQLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSY 365
Query: 352 AKL--TQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
+ L L +LDLS N + + + L HLD ++ L + + L L+Y+D
Sbjct: 366 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 425
Query: 410 LRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIP 469
+ + L L +A N F A+ + L LDLS +LE I
Sbjct: 426 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QIS 484
Query: 470 MSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVR 528
+F+ L L++L +S N L + + +L +L L+ S+N + + FP +
Sbjct: 485 WGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 543
Query: 529 TLRLA 533
L
Sbjct: 544 FFNLT 548
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 383 LDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGP 442
+DLS N L + S + + S L ++DL + ++ + L L+L G P
Sbjct: 32 IDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT----GNP 86
Query: 443 IPEFSNASYSALDTLD---LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
I FS S+S L +L+ +L I +L LK L ++ N ++ A
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 500 LRNLIRLELSYNNLTVNASGDSSF 523
L NL+ ++LSYN + D F
Sbjct: 147 LTNLVHVDLSYNYIQTITVNDLQF 170
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 23/227 (10%)
Query: 417 GSIPRSLFSIPMLQQLLLANN--KFGGPIPEFSNASYSALDTLDLSANRLEGPIPMS--I 472
GSI ++P L L L+ N F G +S+ ++L LDLS N G I MS
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFN---GAIIMSANF 390
Query: 473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRL 532
L+ L+ L + L + +A L L+ L++SY N ++ G + + TL++
Sbjct: 391 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 450
Query: 533 A--SCKLKVIPNL-KSQSKLFNLDLSD---NQISGEIPNWVWEIGNGGLEYXXXXXXXXX 586
A S K + N+ + + L LDLS QIS + + + + + +
Sbjct: 451 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 510
Query: 587 XXQRPYSISDLNLMTVLDLHSNQLQ---GNIPHPPRNAVLVDYSNNS 630
+ YS+S LD N+++ G + H P++ + +NNS
Sbjct: 511 HYNQLYSLS------TLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 551
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSAL---- 454
W++L +L V++ N +P L ++P Q + +A N+ G E + AL
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNR--GISGEQLKDDWQALADAP 302
Query: 455 -----DTLDLSANRLEG-PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
+ + N L+ P+ S+ + K L L N+L G +L A L L L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEG--KLPAFGSEIKLASLNL 360
Query: 509 SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNL---KSQSKLFNLDLSDNQI 559
+YN +T + F QV L A KLK IPN+ KS S +D S N+I
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 136
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK 366
S +P + LT L +LDLSSNK
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTV 848
S+P LQ++D++ +C + + ED A + + +LT Q +
Sbjct: 50 SFPELQVLDLS----------RC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 849 TWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIG 907
+ G L K++++ T++ S NF IG LK+L LN + N +P
Sbjct: 95 AFSGLS-SLQKLVAVETNLA-SLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 908 NLQQLESLDLSMNHL 922
NL LE LDLS N +
Sbjct: 147 NLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 137
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK 366
S +P + LT L +LDLSSNK
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNK 161
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTV 848
S+P LQ++D++ +C + + ED A + + +LT Q +
Sbjct: 51 SFPELQVLDLS----------RC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 95
Query: 849 TWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIG 907
+ G L K++++ T++ S NF IG LK+L LN + N +P
Sbjct: 96 AFSGLS-SLQKLVAVETNLA-SLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 908 NLQQLESLDLSMNHL 922
NL LE LDLS N +
Sbjct: 148 NLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 138
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK 366
S +P + LT L +LDLSSNK
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNK 162
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTV 848
S+P LQ++D++ +C + + ED A + + +LT Q +
Sbjct: 52 SFPELQVLDLS----------RC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 96
Query: 849 TWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIG 907
+ G L K++++ T++ S NF IG LK+L LN + N +P
Sbjct: 97 AFSGLS-SLQKLVAVETNLA-SLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 908 NLQQLESLDLSMNHL 922
NL LE LDLS N +
Sbjct: 149 NLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 137
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK 366
S +P + LT L +LDLSSNK
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNK 161
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTV 848
S+P LQ++D++ +C + + ED A + + +LT Q +
Sbjct: 51 SFPELQVLDLS----------RC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 95
Query: 849 TWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIG 907
+ G L K++++ T++ S NF IG LK+L LN + N +P
Sbjct: 96 AFSGLS-SLQKLVAVETNLA-SLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 908 NLQQLESLDLSMNHL 922
NL LE LDLS N +
Sbjct: 148 NLTNLEHLDLSSNKI 162
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 5/215 (2%)
Query: 323 LPDSI-GNLKNLSRLDLARCNLS--GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN 379
LP + L L++L L+ LS G S T L YLDLS N + + +
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
L HLD ++ L + + L NL+Y+D+ + + + L+ L +A N F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 440 GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
L LDLS +LE P + L +L++L +S N ++ +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKC 221
Query: 500 LRNLIRLELSYNNLTVNASGD-SSFPSQVRTLRLA 533
L +L L+ S N++ + + FPS + L L
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 307 SSLRTLMLSYANF-SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSN 365
SSL L ++ +F LPD L+NL+ LDL++C L PT+ L+ L L++S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 366 KF 367
F
Sbjct: 210 NF 211
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 25/278 (8%)
Query: 505 RLELSYNNLTVNASGDSS----FPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQ 558
R S + N+ G +S PS L L S KL+ +P+ ++L L LS N
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63
Query: 559 ISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQGN---I 614
+S + + G L+Y + L + LD HSN Q + +
Sbjct: 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSV 121
Query: 615 PHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSIT-GVIPETICRAKYLLVL 673
RN + +D S+ + G I N ++ ++ NS +P+ + L L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 674 DLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLNENQLGG 731
DLS +L PT +S L VLN+ N+ TFP C LQ LD + N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYSLNHIMT 237
Query: 732 TVPKSLANC-RKLEVLDLGNNKI-----RDTFPCWLKN 763
+ + L + L L+L N +F W+K+
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 885 LKSLYGLNFSQNAFGGP-IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
L SL L + N+F +P L+ L LDLS L P +L+ L VLN+SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 944 NNL 946
NN
Sbjct: 209 NNF 211
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
L TL L+GN + +L F SSL+ L+ N + + IG+LK L L++A NL
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH-NLI 138
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK 366
S +P + LT L +LDLSSNK
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNK 162
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTV 848
S+P LQ++D++ +C + + ED A + + +LT Q +
Sbjct: 52 SFPELQVLDLS----------RC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 96
Query: 849 TWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIG 907
+ G L K++++ T++ S NF IG LK+L LN + N +P
Sbjct: 97 AFSGLS-SLQKLVALETNLA-SLENF------PIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 908 NLQQLESLDLSMNHL 922
NL LE LDLS N +
Sbjct: 149 NLTNLEHLDLSSNKI 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 346 SIPTSLAK-LTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
++P + K L L L ++ NK PI NL L L N L ++ ++ L+
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT 133
Query: 404 NLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
L Y+ L N L S+P+ +F + L++L L NN+ +PE + + L TL L N
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNN 191
Query: 463 RLEGPIPMSIFE-LKNLKILMLSSN----KLNGTVQLA 495
+L+ +P F+ L+ LK+L L N NG + +A
Sbjct: 192 QLKR-VPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMA 228
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 14/160 (8%)
Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKF----GGPIPEFSNASYSALDTLDLSANR 463
+DL++N L+ ++ + L+ L L +NK G E N L+TL ++ N+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-----LETLWVTDNK 96
Query: 464 LEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSS 522
L+ +P+ +F +L NL L L N+L ++ L L L L YN L G
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 523 FPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQIS 560
+ ++ LRL + +LK +P ++L L L +NQ+
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
Query: 303 FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDL 362
F + +L TL ++ + L NL+ L L R L P LT+L YL L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 363 SSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPR 421
N+ P +L L L NN L + ++ L+ L + L NN L +P
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Query: 422 SLF-SIPMLQQLLLANN 437
F S+ L+ L L N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 33/188 (17%)
Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQL------------------LLANNKFG 440
W +L +L V+L N +P L+ +P LQ L LA+++
Sbjct: 487 WSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 441 GPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRL 500
GP + Y+ L+ E P S+ + L +L NK+ L A
Sbjct: 547 GPKIQIFYXGYNNLE---------EFPASASLQKXVKLGLLDCVHNKVR---HLEAFGTN 594
Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLF---NLDLSDN 557
L L+L YN + +F QV L + KLK IPN+ + ++ ++D S N
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYN 654
Query: 558 QISGEIPN 565
+I E N
Sbjct: 655 KIGSEGRN 662
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 9/243 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
+++LDLS N + D ++L+ L+L + + + D+ +L +L LDL+ +LS
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 345 GSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL 402
+ L+ L YL+L N + +G NL L + N I D+ L
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 173
Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN--ASYSALDTLDLS 460
++L ++++ +L +SL SI + L L ++ + F++ +S L+ D +
Sbjct: 174 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 233
Query: 461 ANRLE-GPIPMSIFELKN-LKILMLSSNKLNGTVQLAAIQRLRNLIRL-ELSYNNLTVNA 517
R + P+P+ E+ + +K L + L ++ LR ++ L E+ +++ T+N
Sbjct: 234 LARFQFSPLPVD--EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 291
Query: 518 SGD 520
GD
Sbjct: 292 LGD 294
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEI 563
L+LS+N +T GD + ++ L L S ++ I S L +LDLSDN +S
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 564 PNW 566
+W
Sbjct: 117 SSW 119
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 26/180 (14%)
Query: 400 EHLSNLVYVDL----------RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449
+HL +L ++DL +N+A G+ P SL ++ + Q L + K G + N
Sbjct: 357 QHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKN- 414
Query: 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
L +LD+S N P+P S + ++ L LSS + V+ Q L L++S
Sbjct: 415 ----LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVS 465
Query: 510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWE 569
NNL S F +++ L ++ KLK +P+ L + ++ NQ+ +P+ +++
Sbjct: 466 NNNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKS-VPDGIFD 520
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 9/243 (3%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
+++LDLS N + D ++L+ L+L + + + D+ +L +L LDL+ +LS
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 345 GSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL 402
+ L+ L YL+L N + +G NL L + N I D+ L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN--ASYSALDTLDLS 460
++L ++++ +L +SL SI + L L ++ + F++ +S L+ D +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 461 ANRLE-GPIPMSIFELKN-LKILMLSSNKLNGTVQLAAIQRLRNLIRL-ELSYNNLTVNA 517
R + P+P+ E+ + +K L + L ++ LR ++ L E+ +++ T+N
Sbjct: 208 LARFQFSPLPVD--EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 518 SGD 520
GD
Sbjct: 266 LGD 268
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 26/180 (14%)
Query: 400 EHLSNLVYVDL----------RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449
+HL +L ++DL +N+A G+ P SL ++ + Q L + K G + N
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKN- 388
Query: 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
L +LD+S N P+P S + ++ L LSS + V+ Q L L++S
Sbjct: 389 ----LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVS 439
Query: 510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWE 569
NNL S F +++ L ++ KLK +P+ L + +S NQ+ +P+ +++
Sbjct: 440 NNNL----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS-VPDGIFD 494
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEI 563
L+LS+N +T GD + ++ L L S ++ I S L +LDLSDN +S
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
Query: 564 PNW 566
+W
Sbjct: 91 SSW 93
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 453 ALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
+L+TL+L NRL +P FE L L+ L L +N + ++ A R+ +L RL+L
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGEL 141
Query: 512 NLTVNASGDSSFPSQV--RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
+ +++F V R L L C LK IPNL + +L L+LS N++
Sbjct: 142 K-RLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 54/228 (23%)
Query: 334 SRLDLARCNLSGSIPTSLAKLTQLVYLDLSSN----------KFVGPIPSLHMSKNLTH- 382
SR+ R L+ +P S+ T+ YL+L N K + + L +SKNL
Sbjct: 17 SRVICTRRELA-EVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 383 --------------LDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IP 427
L+L +N L + + +E+LS L + LRNN + SIP F+ +P
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP 131
Query: 428 MLQQLLLANNKFGGPIPEFS-----NASY-----------------SALDTLDLSANRLE 465
L++L L K I E + N Y L+ L+LS NRL+
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 466 GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
P S L +L+ L L ++ T++ A L++L L LS+NNL
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 453 ALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
+L+TL+L NRL +P FE L L+ L L +N + ++ A R+ +L RL+L
Sbjct: 84 SLNTLELFDNRL-TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGEL 141
Query: 512 NLTVNASGDSSFPSQV--RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
+ +++F V R L L C LK IPNL + +L L+LS N++
Sbjct: 142 K-RLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 53/217 (24%)
Query: 345 GSIPTSLAKLTQLVYLDLSSN----------KFVGPIPSLHMSKNLTH------------ 382
+P S+ T+ YL+L N K + + L +SKNL
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 383 ---LDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNK 438
L+L +N L + + +E+LS L + LRNN + SIP F+ +P L++L L K
Sbjct: 85 LNTLELFDNRL-TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 439 FGGPIPEFS-----NASY-----------------SALDTLDLSANRLEGPIPMSIFELK 476
I E + N Y L+ L+LS NRL+ P S L
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
+L+ L L ++ T++ A L++L L LS+NNL
Sbjct: 203 SLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 122/293 (41%), Gaps = 68/293 (23%)
Query: 237 LSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQ-VHTLQTLDLSGNSL 295
L+V+ L++NDLSS P I L TL +S N+L
Sbjct: 119 LTVLVLERNDLSS-------------------------LPRGIFHNTPKLTTLSMSNNNL 153
Query: 296 LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRL-DLARCNLSGSIPTSLAKL 354
R F +SL+ L LS + V +LS + L N+S ++ ++LA
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLSTLAIP 204
Query: 355 TQLVYLDLSSNKF---VGPIPSLHMSKNLTHLDLSNNALPGAISSTDW-EHLSNLVYVDL 410
+ LD S N GP+ + LT L L +N L + T W + LV VDL
Sbjct: 205 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNL----TDTAWLLNYPGLVEVDL 255
Query: 411 RNNALNGSIPRSLFSIPMLQQLLLANNK------FGGPIPEFSNASYSALDTLDLSANRL 464
N L + + L++L ++NN+ +G PIP L LDLS N L
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKVLDLSHNHL 307
Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
+ + + L+ L L N + T++L+ L+NL LS+N+ N+
Sbjct: 308 LH-VERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLT---LSHNDWDCNS 355
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 121/281 (43%), Gaps = 30/281 (10%)
Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSI-GNLKNLSRLDLARC 341
HT+Q L + N++ R P +N L T+++ N LP I N L+ L ++
Sbjct: 93 HTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKF----VGPIPSLHMSKNLTHLDLSNNALPGAISST 397
NL + T L L LSSN+ + IPSL N+++ LS A+P A+
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEEL 210
Query: 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTL 457
D H S N + G + L +I LQ L + + +Y L +
Sbjct: 211 DASHNSI--------NVVRGPVNVEL-TILKLQHNNLTDTAWL--------LNYPGLVEV 253
Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAI-QRLRNLIRLELSYNNLTVN 516
DLS N LE + +++ L+ L +S+N+L V L Q + L L+LS+N+L
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSHNHLLHV 310
Query: 517 ASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN 557
F ++ L L + V L + L NL LS N
Sbjct: 311 ERNQPQF-DRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHN 349
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 822 EDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEK 881
++ S+ F+ T + D+ KG + K L++ + S N+FD
Sbjct: 259 QEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQLCQIS 317
Query: 882 IGRLKSLYGL----NFSQNAFGGPIPSTIGNLQQLESLDLSMNHL--SDQIPIQLANLTF 935
SL L N + G +GNLQ +LDLS N + SD +QL NL+
Sbjct: 318 AANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQ---TLDLSHNDIEASDCCSLQLKNLSH 374
Query: 936 LSVLNLSHNNLEGNIPVSTQLQSF 959
L LNLSHN P+ Q Q+F
Sbjct: 375 LQTLNLSHNE-----PLGLQSQAF 393
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 866 SIDFSRNNFDGP--IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHL- 922
++D S N+ + ++ L L LN S N G QLE LDL+ L
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 923 --SDQIPIQLANLTFLSVLNLSH 943
+ Q P Q NL FL VLNL++
Sbjct: 411 INAPQSPFQ--NLHFLQVLNLTY 431
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 120/326 (36%), Gaps = 77/326 (23%)
Query: 277 ETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRL 336
+T H L TL L+GN L+ + SL+ L L S + + NL+NL L
Sbjct: 72 DTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESL 131
Query: 337 DLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISS 396
L + +SS KF P ++NL LD NNA+ IS
Sbjct: 132 YLGSNH-------------------ISSIKFPKDFP----ARNLKVLDFQNNAI-HYISR 167
Query: 397 TDWEHLSNLVYVDLRNNALN-GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN------- 448
D L + + L N N I F + Q L FGG P S
Sbjct: 168 EDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSL-----NFGG-TPNLSVIFNGLQN 221
Query: 449 --------ASYSALDTLDLSANRLEGPIPMSI--FELKNLKILMLSSNKLNGTVQL---- 494
++ +D D+S+ L+G MS+ L+ + +SS QL
Sbjct: 222 STTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELD 281
Query: 495 ----------AAIQRLRNLIRLELSYNNL-TVNASGDSSFPS--------QVRTLRLASC 535
+ ++ L L +L LS N+ + ++FPS V+ L L
Sbjct: 282 LTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVG 341
Query: 536 KLKVIPNLKSQSKLFNLDLSDNQISG 561
L+ + NL++ LDLS N I
Sbjct: 342 CLEKLGNLQT------LDLSHNDIEA 361
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 687 CLIKMSDILGVLNLRGNSL--SGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLE 744
CL K+ + L L+L N + S S+ LQTL+L+ N+ G ++ C +LE
Sbjct: 342 CLEKLGN-LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 745 VLDLGNNKIRDTFP 758
+LDL ++ P
Sbjct: 401 LLDLAFTRLHINAP 414
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN-ASYSALDTLD 458
++L+NL+ ++L++N + P L ++ + +L L+ G P+ S A ++ TLD
Sbjct: 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELS----GNPLKNVSAIAGLQSIKTLD 113
Query: 459 LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
L++ ++ P++ L NL++L L N++ LA + L+ LS N V+
Sbjct: 114 LTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPLAGLTNLQ-----YLSIGNAQVSDL 166
Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
+ S++ TL+ K+ I L S L + L +NQIS P
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP 212
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLT--QLVYLDLSSNKFVGPIPSLHMSKNLTHL 383
+I L+++ LDL ++ P LA L+ Q++YLDL+ + P+ L NL +L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGL---TNLQYL 156
Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG--G 441
+ N + T +LS L + +N ++ P L S+P L ++ L NN+
Sbjct: 157 SIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Query: 442 PIPEFSN 448
P+ SN
Sbjct: 212 PLANTSN 218
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTL------MLSYANFSGVLPDSIGNLKNLSRLDL 338
LQ L+L GN +G++ K +SL+TL +LS+ + S + + +LK ++ +DL
Sbjct: 451 LQHLNLQGNHFPKGNIQ---KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL 374
+ L+ S +L+ L +YL+L+SN +PSL
Sbjct: 508 SHNRLTSSSIEALSHLKG-IYLNLASNHISIILPSL 542
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 308 SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF 367
S+ ++ L F + ++ L LDL +LS +P+ L L+ L L LS+NKF
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
Query: 368 -------VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGS-- 418
PSL THL + N + + E+L NL +DL ++ + S
Sbjct: 314 ENLCQISASNFPSL------THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 419 IPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA--LDTLDLSANRLEGPIPMSIFE-L 475
L ++ LQ L L+ N+ P+ + A L+ LDL+ RL+ S F+ L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 476 KNLKILMLSSNKLNGTVQ-----LAAIQRL 500
LK+L LS + L+ + + L A+Q L
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 906 IGNLQQLESLDLSMNHL--SDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSF 959
+ NL+ L LDLS + + SD +QL NL+ L LNLS+N P+S + ++F
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-----PLSLKTEAF 396
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 848 VTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIG 907
V +KG + ++ L + T D + + E + + S+ +N ++ F +T
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFH 275
Query: 908 NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS-TQLQSFSPTSFEG 966
L+ LDL+ HLS ++P L L+ L L LS N E +S + S + S +G
Sbjct: 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 967 N 967
N
Sbjct: 335 N 335
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 123/295 (41%), Gaps = 72/295 (24%)
Query: 237 LSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQ-VHTLQTLDLSGNSL 295
L+V+ L++NDLSS P I L TL +S N+L
Sbjct: 125 LTVLVLERNDLSS-------------------------LPRGIFHNTPKLTTLSMSNNNL 159
Query: 296 LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRL-DLARCNLSGSIPTSLAKL 354
R F +SL+ L LS + V +LS + L N+S ++ ++LA
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLSTLAIP 210
Query: 355 TQLVYLDLSSNKF---VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN---LVYV 408
+ LD S N GP+ + LT L L +N L + T W L N LV V
Sbjct: 211 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNL----TDTAW--LLNYPGLVEV 259
Query: 409 DLRNNALNGSIPRSLFSIPMLQQLLLANNK------FGGPIPEFSNASYSALDTLDLSAN 462
DL N L + + L++L ++NN+ +G PIP L LDLS N
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKVLDLSHN 311
Query: 463 RLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
L + + + L+ L L N + T++L+ L+NL LS+N+ N+
Sbjct: 312 HL-LHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLT---LSHNDWDCNS 361
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 24/212 (11%)
Query: 282 VHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSI-GNLKNLSRLDLAR 340
HT+Q L + N++ R P +N L T+++ N LP I N L+ L ++
Sbjct: 98 AHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156
Query: 341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVGP----IPSLHMSKNLTHLDLSNNALPGAISS 396
NL + T L L LSSN+ IPSL N+++ LS A+P A+
Sbjct: 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-FHANVSYNLLSTLAIPIAVEE 215
Query: 397 TDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT 456
D H S N + G + L +I LQ L + + +Y L
Sbjct: 216 LDASHNSI--------NVVRGPVNVEL-TILKLQHNNLTDTAWL--------LNYPGLVE 258
Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKL 488
+DLS N LE + +++ L+ L +S+N+L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNK 438
LT L+L N L +S+ ++ L+ L + L NN L S+P +F + L +L L N+
Sbjct: 61 LTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAI 497
+P + L L L+ N+L+ IP F+ L NL+ L LS+N+L +V A
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 498 QRLRNLIRLELSYNNL 513
RL L + L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
+ LDL L S F + L L L Y + +L L L LA L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 346 SIPTSL-AKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
S+P + LTQL L L N+ P L L L+ N L +I + ++ L+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155
Query: 404 NLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKF 439
NL + L N L S+P F + LQ + L N+F
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 338 LARCNLSG--SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAIS 395
+ RC+ G +P + + +YLD N+F L K+LT +DLSNN + +S
Sbjct: 14 VVRCSNKGLKVLPKGIPRDVTELYLD--GNQFTLVPKELSNYKHLTLIDLSNNRI-STLS 70
Query: 396 STDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALD 455
+ + +++ L+ + L N L PR+ + L+ L L N +PE + SAL
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALS 129
Query: 456 TLDLSANRL 464
L + AN L
Sbjct: 130 HLAIGANPL 138
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 902 IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST--QLQSF 959
+P + N + L +DLS N +S +N+T L L LS+N L IP T L+S
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 960 SPTSFEGNE 968
S GN+
Sbjct: 105 RLLSLHGND 113
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 349 TSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL----PGAISSTDWEHLSN 404
T LA L QL D + + V P + H L L L L PG L+
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAA 130
Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
L Y+ L++NAL + + L L L N+ +PE + +LD L L NR+
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 189
Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
P + +L L L L +N L+ + A+ LR L L L+ N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 349 TSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL----PGAISSTDWEHLSN 404
T LA L QL D + + V P + H L L L L PG L+
Sbjct: 76 TGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRG-----LAA 129
Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
L Y+ L++NAL + + L L L N+ +PE + +LD L L NR+
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 188
Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
P + +L L L L +N L+ + A+ LR L L L+ N
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 234
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNK 438
LT L+L N L +S+ ++ L+ L + L NN L S+P +F + L +L L N+
Sbjct: 61 LTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAI 497
+P + L L L+ N+L+ IP F+ L NL+ L LS+N+L +V A
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 498 QRLRNLIRLELSYNNL 513
RL L + L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
+ LDL L S F + L L L Y + +L L L LA L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 346 SIPTSL-AKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
S+P + LTQL L L N+ P L L L+ N L +I + ++ L+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155
Query: 404 NLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKF 439
NL + L N L S+P F + LQ + L N+F
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 169/449 (37%), Gaps = 90/449 (20%)
Query: 282 VHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
+++LDLS N + S D + +L+ L+L+ + + DS +L +L LDL+
Sbjct: 25 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSN--KFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDW 399
LS + L+ L +L+L N K +G L L + N I D+
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 144
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA------ 453
L+ L +++ + L P+SL SI + L+L + + F + + S
Sbjct: 145 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 204
Query: 454 ---LDTLDLSA-NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR--LE 507
LDT S + E + F +N+KI S L + +L N I LE
Sbjct: 205 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES---------LFQVMKLLNQISGLLE 255
Query: 508 LSYNNLTVNASGD-------------------------------------SSFPSQVRTL 530
L +++ T+N G+ S +V+ +
Sbjct: 256 LEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRI 315
Query: 531 RLASCKLKVIPNLKSQ--SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXX 588
+ + K+ ++P L SQ L LDLS+N + E + N E
Sbjct: 316 TVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEY------LKNSACEDAWPSLQTLILR 369
Query: 589 QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIG--NSMNFT 646
Q + + T+L L +N +D S NSF S+P M +
Sbjct: 370 QNHLASLEKTGETLLTL-------------KNLTNIDISKNSF-HSMPETCQWPEKMKYL 415
Query: 647 IFFSLSSNSITGVIPETICRAKYLLVLDL 675
S +S+TG IP+T L +LD+
Sbjct: 416 NLSSTRIHSVTGCIPKT------LEILDV 438
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 378 KNLTHLDLSNNALPGAISSTDW-EHLSNLVYVDLRNNALNGSIPRSL------------- 423
KNLT++D+S N+ + W E + L R +++ G IP++L
Sbjct: 387 KNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLF 446
Query: 424 -FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKIL 481
++P L++L ++ NK +P+ S L L +S N+L+ +P IF+ L +L+ +
Sbjct: 447 SLNLPQLKELYISRNKL-MTLPDAS--LLPMLLVLKISRNQLKS-VPDGIFDRLTSLQKI 502
Query: 482 MLSSN 486
L +N
Sbjct: 503 WLHTN 507
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 330 LKNLSRLDLARCNLSGS--IPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLS 386
L+NL +LDL+ ++ S L L L YL+LS N+ +G + L LD++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
L + +++L L ++L + L+ S L + L+ L L N F
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF------- 460
Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
+ S S + L + + +L+IL+LSS L ++ A LRN+ L
Sbjct: 461 QDGSISKTNLLQM---------------VGSLEILILSSCNL-LSIDQQAFHGLRNVNHL 504
Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP 541
+LS+N+LT + S D+ + L +AS +++IP
Sbjct: 505 DLSHNSLTGD-SMDALSHLKGLYLNMASNNIRIIP 538
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 285 LQTLDLSGNSLLRGSLPD---FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
L+ L+L GNS GS+ SL L+LS N + + L+N++ LDL+
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN 509
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSN 365
+L+G +L+ L L YL+++SN
Sbjct: 510 SLTGDSMDALSHLKGL-YLNMASN 532
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 124/318 (38%), Gaps = 80/318 (25%)
Query: 149 AMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSS 208
TR+ LDL++++ G P +E N L+ L L+ + + CQ ++
Sbjct: 275 CFTRVQELDLTAAHLNGLPSGIEGMN---------SLKKLVLNANSFD----QLCQINAA 321
Query: 209 LVPKLRVLSLSSCYLSGPIHP------SLAKLQSLSVICLDQNDLSSPVPEFLADXXXXX 262
P LR L Y+ G + L KL++L + L +D+ + +D
Sbjct: 322 SFPSLRDL-----YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEA------SDCCNL- 369
Query: 263 XXXXXXXXXXXXXPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGV 322
+ + LQ L+LS N L F + L L +++ +
Sbjct: 370 ---------------QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVK 414
Query: 323 LPDS-IGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF-------------V 368
P S NL L L+L+ C L S LA L L +L+L N F V
Sbjct: 415 APHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV 474
Query: 369 GPIP---------------SLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
G + + H +N+ HLDLS+N+L G S HL L Y+++ +N
Sbjct: 475 GSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD-SMDALSHLKGL-YLNMASN 532
Query: 414 ALNGSIPRSLFSIPMLQQ 431
+ IP L +P L Q
Sbjct: 533 NIR-IIPPHL--LPALSQ 547
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 881 KIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQ-LANLTFLSVL 939
++ L+ L LN S N G QLE LD++ HL + P NL L VL
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 940 NLSHNNLE-GNIPVSTQLQSFSPTSFEGN 967
NLSH L+ N + LQ + +GN
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANN 437
+L HLDLS N L +SS+ ++ LS+L +++L N SLFS + LQ L + N
Sbjct: 101 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 438 KFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILML 483
I A + L+ L++ A+ L+ P S+ ++N+ L+L
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
++L N+ Y+ L N L+ +L + L L+L N+ +P + L L L
Sbjct: 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVL 116
Query: 460 SANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
N+L+ +P +F+ L NL L L N+L ++ +L NL RL+L N L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 519 GDSSFPSQVRTLRLASCKLKVIPN 542
G +Q++ L L +LK +P+
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPD 198
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 299 SLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQ 356
SLPD F K ++L L L + + L NL+RLDL L KLTQ
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 357 LVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406
L L L+ N+ P +LTH+ L NN P + +D +LS +
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN--PWDCACSDILYLSRWI 231
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSL-AKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHL 383
++ L NL+ L L L S+P + KLT L L L N+ P NLT+L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 384 DLSNN---ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKF 439
L +N +LP + ++ L+NL +DL NN L S+P +F + L+QL L +N+
Sbjct: 139 YLYHNQLQSLPKGV----FDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 281 QVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSI-GNLKNLSRLD 337
++ L L L+GN L SLP+ F K ++L+ L+L LPD + L NL+ L
Sbjct: 83 ELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLY 139
Query: 338 LARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISS 396
L L KLT L LDL +N+ P L L L++N L ++
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPD 198
Query: 397 TDWEHLSNLVYVDLRNN 413
++ L++L ++ L NN
Sbjct: 199 GVFDRLTSLTHIWLLNN 215
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 288 LDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSI 347
LDL N + DF +L TL+L S + P + L L RL L++ L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 348 PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVY 407
P M K L L + N + + + + L+ ++
Sbjct: 116 PEK-------------------------MPKTLQELRVHENEI-TKVRKSVFNGLNQMIV 149
Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
V+L N L S + N F G SY + D + +
Sbjct: 150 VELGTNPLKSS--------------GIENGAFQG----MKKLSY--IRIADTNITTIPQG 189
Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
+P S+ EL L NK+ V A+++ L NL +L LS+N+++ +G + +
Sbjct: 190 LPPSLTELH------LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 528 RTLRLASCKLKVIPNLKSQSKLFN-LDLSDNQISG 561
R L L + KL +P + K + L +N IS
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
P + L+D NN T GD N N L +N I+ + P L L LS
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSK 109
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
N+L ++P KM L L + N ++ F G + ++L N L
Sbjct: 110 NQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 346 SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT------------------------ 381
++PT + +Q ++L + +V P S +NLT
Sbjct: 24 AVPTGIPASSQRIFLHGNRISYV-PAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLE 82
Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441
LDLS+NA + T + L +L + L L P + LQ L L +N
Sbjct: 83 QLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Query: 442 PIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRL 500
+P+ + L L L NR+ +P F L +L L+L N + V A + L
Sbjct: 143 -LPDNTFRDLGNLTHLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHV-ARVHPHAFRDL 199
Query: 501 RNLIRLELSYNNLTV 515
L+ L L NNL++
Sbjct: 200 GRLMTLYLFANNLSM 214
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%)
Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSN- 365
+S + + L S V S + +NL+ L L L+G + LT L LDLS N
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 366 ----------KFVGPIPSLHMSK-NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNA 414
+ +G + +LH+ + L L PG L+ L Y+ L++N
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELG------PGLFRG-----LAALQYLYLQDNN 139
Query: 415 LNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE 474
L + + L L L N+ +PE + +LD L L N + P + +
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRD 198
Query: 475 LKNLKILMLSSNKLNG-----TVQLAAIQRLR 501
L L L L +N L+ V L ++Q LR
Sbjct: 199 LGRLMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 288 LDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSI 347
LDL N + DF +L TL+L S + P + L L RL L++ L +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 348 PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVY 407
P M K L L + N + + + + L+ ++
Sbjct: 116 PEK-------------------------MPKTLQELRVHENEI-TKVRKSVFNGLNQMIV 149
Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
V+L N L S + N F G SY + D + +
Sbjct: 150 VELGTNPLKSS--------------GIENGAFQG----MKKLSY--IRIADTNITTIPQG 189
Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
+P S+ EL L NK+ V A+++ L NL +L LS+N+++ +G + +
Sbjct: 190 LPPSLTELH------LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 528 RTLRLASCKLKVIPNLKSQSKLFN-LDLSDNQISG 561
R L L + KL +P + K + L +N IS
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
P + L+D NN T GD N N L +N I+ + P L L LS
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSK 109
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
N+L ++P KM L L + N ++ F G + ++L N L
Sbjct: 110 NQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 96/258 (37%), Gaps = 52/258 (20%)
Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTS--LAKLTQLVYLDLSS 364
SSL L L Y F + + L NL L L +CNL G++ + LT L L L
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 365 N--KFVGPIPSLHMSKNLTHLDLSNNALP--------------------GAISSTD---- 398
N K + P + LDL+ N + +I+ D
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 399 ---WEHLSN------LVYVDLRNNALNGSIPRSLFSI---PMLQQLLLAN-----NKFGG 441
WE N + +DL N S+ + F +Q L+L+N + FG
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 442 ---PIPE---FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
P+ F S + T DLS +++ + +L+ L L+ N++N +
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDN 317
Query: 496 AIQRLRNLIRLELSYNNL 513
A L +L L L N L
Sbjct: 318 AFWGLTHLKELALDTNQL 335
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 406 VYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
Y+DL N+L S+P +F + L QL L NK +P ++L L+LS N+L
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL 88
Query: 465 EGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF 523
+ +P +F+ L LK L L++N+L Q L + + ++ LT
Sbjct: 89 QS-LPNGVFDKLTQLKELALNTNQL---------QSLPDGV-----FDKLT--------- 124
Query: 524 PSQVRTLRLASCKLKVIPN 542
Q++ LRL +LK +P+
Sbjct: 125 --QLKDLRLYQNQLKSVPD 141
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 128 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIRRIVPLA--RLTKLQNL 181
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A++ L+NL LEL
Sbjct: 182 YLSKNHIS---DLRALRGLKNLDVLEL 205
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQ-LANLTFLSVLN 940
+ RL L L+ N +P + L +L++L LS NH+SD ++ L NL L +
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDLRALRGLKNLDVLEL-- 205
Query: 941 LSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 206 FSQEAL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 262
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 263 SFIFYQPVTIGKAKARFHGRVTQPL 287
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 278 TILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLD 337
I + L+ LDL G + LR P F + L+ L+L + LP I L L +LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 338 LARCNLSGSIPTSLAKL 354
L C +P+ +A+L
Sbjct: 284 LRGCVNLSRLPSLIAQL 300
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 130 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 183
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 184 YLSKNHIS---DLRALAGLKNLDVLEL 207
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD LA L L VL L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 208 FSQECL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 264
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 265 SFIFYQPVTIGKAKARFHGRVTQPL 289
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 127 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 180
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 181 YLSKNHIS---DLRALAGLKNLDVLEL 204
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD LA L L VL L
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 204
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 205 FSQECL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 261
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 262 SFIFYQPVTIGKAKARFHGRVTQPL 286
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
L LD+S N L+ ++ + VLNL N L+G++ P ++ LDL+ N++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRI 462
Query: 730 GGTVPKSLANCRKLEVLDLGNNKIR 754
++PK + + + L+ L++ +N+++
Sbjct: 463 -MSIPKDVTHLQALQELNVASNQLK 486
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 623 LVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSG 682
+VDYSN + T +P D+ T SLS NSI+ + I L VL LS+N++
Sbjct: 35 MVDYSNRNLTH-VPKDLPPR---TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 683 KMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT-VPKSLANCR 741
+ D L L++ N L ++ L+ LDL+ N V K N
Sbjct: 91 LDFHVFLFNQD-LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146
Query: 742 KLEVLDLGNNKIR 754
KL L L K R
Sbjct: 147 KLTFLGLSAAKFR 159
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD--QIPIQLANLTFLSVLNLSHN 944
S LNF+QN F + L++L++L L N L + ++ + N++ L L++S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 945 NLEGN 949
+L +
Sbjct: 414 SLNSH 418
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 715 GNCG--LQTLDLNENQLGGTVPKSLANCRKLEVLDL 748
G+ G L+T+ N+ +GGT+P+ +A+C LEVLDL
Sbjct: 2064 GDVGVVLETMGTNDTVIGGTLPQRIASC--LEVLDL 2097
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 130 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 183
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 184 YLSKNHIS---DLRALAGLKNLDVLEL 207
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD LA L L VL L
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 208 FSQECL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 264
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 265 SFIFYQPVTIGKAKARFHGRVTQPL 289
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 287 TLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
T+D SG SL S+P P ++ + L L + + P L L+RLDL L+
Sbjct: 13 TVDCSGKSL--ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 346 SIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
KLTQL L L+ N+ P + K+LTH+ L NN P + +D +LS
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN--PWDCACSDILYLSR 126
Query: 405 LV 406
+
Sbjct: 127 WI 128
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
T+D S L +P I ++L L N++ ++ RL L RL+L N LTV
Sbjct: 13 TVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 516 NASGDSSFPSQVRTLRLASCKLKVIP-----NLKSQSKLFNLD 553
+G +Q+ L L +LK IP NLKS + ++ L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVN 516
L+L N ++ + L +L++L L N + +++ A L +L LEL N LTV
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 517 ASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSD 556
SG + S++R L L + ++ IP+ L LDL +
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 51/243 (20%)
Query: 297 RGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKL 354
R L + P+ S+ R L L N + D+ +L +L L L R S+ ++
Sbjct: 63 RRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR--------NSIRQI 114
Query: 355 TQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNA 414
+ L+S L L+L +N L I S +E+LS L + LRNN
Sbjct: 115 EVGAFNGLAS---------------LNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP 158
Query: 415 LNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFS-----NASY----------------- 451
+ SIP F+ +P L +L L K I E + N Y
Sbjct: 159 IE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217
Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
L+ L++S N P S L +LK L + +++++ ++ A L +L+ L L++N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276
Query: 512 NLT 514
NL+
Sbjct: 277 NLS 279
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 287 TLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
T+D SG SL S+P P ++ + L L + + P L L+RLDL L+
Sbjct: 21 TVDCSGKSL--ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 346 SIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
KLTQL L L+ N+ P + K+LTH+ L NN P + +D +LS
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN--PWDCACSDILYLSR 134
Query: 405 LV 406
+
Sbjct: 135 WI 136
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
T+D S L +P I ++L L N++ ++ RL L RL+L N LTV
Sbjct: 21 TVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 516 NASGDSSFPSQVRTLRLASCKLKVIP-----NLKSQSKLFNLD 553
+G +Q+ L L +LK IP NLKS + ++ L+
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 119
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 128 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 181
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 182 YLSKNHIS---DLRALAGLKNLDVLEL 205
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD LA L L VL L
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 205
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 206 FSQECL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 262
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 263 SFIFYQPVTIGKAKARFHGRVTQPL 287
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin
Domain With An Additional Leucine Rich Repeat Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb Internalin
Domain With An Additional Leucine Rich Repeat Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb Internalin
Domain With An Additional Leucine Rich Repeat Inserted
Length = 311
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD LA L L VL L
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 227
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 228 FSQECL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 284
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 285 SFIFYQPVTIGKAKARFHGRVTQPL 309
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNAS-YSALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 148 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 201
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 202 YLSKNHIS---DLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNAS-YSALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 148 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 201
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 202 YLSKNHIS---DLRALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNAS-YSALDTLDLSANRLEGPIPMSIFELKNLKIL 481
L +P L+ L L NNK I + + S + LDTL L N++ +P++ L L+ L
Sbjct: 148 LVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL 201
Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 202 YLSKNHIS---DLRALAGLKNLDVLEL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM 482
L +P L+ L L NNK I S + LDTL L N++ +P++ L L+ L
Sbjct: 125 LVHLPQLESLYLGNNKITD-ITVLS--RLTKLDTLSLEDNQISDIVPLA--GLTKLQNLY 179
Query: 483 LSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 180 LSKNHIS---DLRALAGLKNLDVLEL 202
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 425 SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILML 483
+P L+++ +NNK I E + S ++ + L++NRLE + +F+ L++LK LML
Sbjct: 55 KLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112
Query: 484 SSNKL 488
SN++
Sbjct: 113 RSNRI 117
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVT 712
SN IPE I +Y L L+NN+ + T + K L +N N ++
Sbjct: 19 SNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 713 FPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
F G G+ + L N+L K L+ L L +N+I
Sbjct: 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 607 SNQLQGNIP-HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETIC 665
SNQ IP H P+ + +NN FT I + + S+N IT +
Sbjct: 19 SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78
Query: 666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLN 725
A + + L++N+L + K + L L LR N ++ + +F G ++ L L
Sbjct: 79 GASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137
Query: 726 ENQLGGTVPKSLANCRKLEVLDL 748
+NQ+ P + L L+L
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNL 160
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
+L LDLSSNK P + +T + L NN L + NL + DLR N
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGN 247
Query: 414 ALNGSIPRSLFS 425
+ R FS
Sbjct: 248 GFHCGTLRDFFS 259
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 642 SMNFTIFFSLSS-----NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILG 696
+ NFT + L+S N+I+ + PE + L VL+L +N+LS ++ L
Sbjct: 47 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLT 105
Query: 697 VLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
L+L NS+ + F L TLDL+ N L T + L+ L L NNKI+
Sbjct: 106 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 163
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGV--LPDSIGNLKNLSRLDLARCNLSGSI 347
LS N L+ + F SL+ LML V P L+NL+ LDL+ N++
Sbjct: 442 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 501
Query: 348 PTSLAKLTQLVYLDLSSN------KFVGPIPSLHMSKNLTHLDLSNNALPG--AISSTDW 399
L L +L LDL N K P ++ K L+HL + N G I +
Sbjct: 502 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 561
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLF 424
+ L L +DL N LN ++P S+F
Sbjct: 562 KDLFELKIIDLGLNNLN-TLPASVF 585
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 156/385 (40%), Gaps = 81/385 (21%)
Query: 443 IPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL----NGTVQLA--- 495
+P + YS L +LD+ N + P +L LK+L L N+L + T
Sbjct: 45 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 104
Query: 496 --------AIQRL--------RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
+IQ++ +NLI L+LS+N L+ G ++ L L++ K++
Sbjct: 105 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 164
Query: 540 IP----NLKSQSKLFNLDLSDNQISGEIPNWVWEIGN------GGLEYXXXXXXXXXXXQ 589
+ ++ + S L L+LS NQI P IG ++
Sbjct: 165 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 224
Query: 590 RPYSISDLNL--------------------MTVLDLHSNQLQ--GNIPH---PPRNAVLV 624
SI +L+L +T+LDL N L GN P +
Sbjct: 225 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 284
Query: 625 DYSN--NSFTSSIPGDIGNSMNFTIFFSLSSNSIT-GVIPE----TICRAKYLLVLDLSN 677
+Y+N + F+ S+ G + N + S + SI+ +P+ + K L L++ +
Sbjct: 285 EYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 343
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV-------TFP--GNCGLQTLDLNENQ 728
N + G IK + G++NL+ SLS + + TF + L L+L +N+
Sbjct: 344 NDIPG------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 397
Query: 729 LGGTVPKSLANCRKLEVLDLGNNKI 753
+ + + LEVLDLG N+I
Sbjct: 398 ISKIESDAFSWLGHLEVLDLGLNEI 422
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 423 LFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM 482
L +P L+ L L NNK I S + LDTL L N++ +P++ L L+ L
Sbjct: 125 LVHLPQLESLYLGNNKITD-ITVLS--RLTKLDTLSLEDNQISDIVPLAC--LTKLQNLY 179
Query: 483 LSSNKLNGTVQLAAIQRLRNLIRLEL 508
LS N ++ L A+ L+NL LEL
Sbjct: 180 LSKNHIS---DLRALCGLKNLDVLEL 202
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
+ RL L L+ N +P + L +L++L LS NH+SD L L L VL L
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDLRA--LCGLKNLDVLEL 202
Query: 942 -SHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSA----PASTDEI 996
S L N P++ Q P + + +G P + + P+ P T+E+
Sbjct: 203 FSQEAL--NKPINHQSNLVVPNTVKNTDGSLVTP-EIISDDGDYEKPNVKWHLPEFTNEV 259
Query: 997 DW-FFIVMAIGFAVG--FGSVVAPL 1018
+ F+ + IG A G V PL
Sbjct: 260 SFIFYQPVTIGKAKARFHGRVTQPL 284
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 642 SMNFTIFFSLSS-----NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILG 696
+ NFT + L+S N+I+ + PE + L VL+L +N+LS ++ L
Sbjct: 52 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLT 110
Query: 697 VLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
L+L NS+ + F L TLDL+ N L T + L+ L L NNKI+
Sbjct: 111 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 168
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGV--LPDSIGNLKNLSRLDLARCNLSGSI 347
LS N L+ + F SL+ LML V P L+NL+ LDL+ N++
Sbjct: 447 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 506
Query: 348 PTSLAKLTQLVYLDLSSN------KFVGPIPSLHMSKNLTHLDLSNNALPG--AISSTDW 399
L L +L LDL N K P ++ K L+HL + N G I +
Sbjct: 507 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 566
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLF 424
+ L L +DL N LN ++P S+F
Sbjct: 567 KDLFELKIIDLGLNNLN-TLPASVF 590
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 156/385 (40%), Gaps = 81/385 (21%)
Query: 443 IPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL----NGTVQLA--- 495
+P + YS L +LD+ N + P +L LK+L L N+L + T
Sbjct: 50 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 109
Query: 496 --------AIQRL--------RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
+IQ++ +NLI L+LS+N L+ G ++ L L++ K++
Sbjct: 110 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 169
Query: 540 IP----NLKSQSKLFNLDLSDNQISGEIPNWVWEIGN------GGLEYXXXXXXXXXXXQ 589
+ ++ + S L L+LS NQI P IG ++
Sbjct: 170 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 229
Query: 590 RPYSISDLNL--------------------MTVLDLHSNQLQ--GNIPH---PPRNAVLV 624
SI +L+L +T+LDL N L GN P +
Sbjct: 230 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 289
Query: 625 DYSN--NSFTSSIPGDIGNSMNFTIFFSLSSNSIT-GVIPE----TICRAKYLLVLDLSN 677
+Y+N + F+ S+ G + N + S + SI+ +P+ + K L L++ +
Sbjct: 290 EYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 348
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV-------TFP--GNCGLQTLDLNENQ 728
N + G IK + G++NL+ SLS + + TF + L L+L +N+
Sbjct: 349 NDIPG------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 402
Query: 729 LGGTVPKSLANCRKLEVLDLGNNKI 753
+ + + LEVLDLG N+I
Sbjct: 403 ISKIESDAFSWLGHLEVLDLGLNEI 427
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 380 LTHLDLSNN---ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLAN 436
+THLDLS+N ALP A+++ L L + +NAL + ++P LQ+LLL N
Sbjct: 465 VTHLDLSHNRLRALPPALAA-----LRCLEVLQASDNALENV--DGVANLPRLQELLLCN 517
Query: 437 NKF 439
N+
Sbjct: 518 NRL 520
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 380 LTHLDLSNN---ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLAN 436
+THLDLS+N ALP A+++ L L + +NAL + ++P LQ+LLL N
Sbjct: 465 VTHLDLSHNRLRALPPALAA-----LRCLEVLQASDNALENV--DGVANLPRLQELLLCN 517
Query: 437 NKF 439
N+
Sbjct: 518 NRL 520
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 642 SMNFTIFFSLSS-----NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILG 696
+ NFT + L+S N+I+ + PE + L VL+L +N+LS ++ L
Sbjct: 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLT 100
Query: 697 VLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
L+L NS+ + F L TLDL+ N L T + L+ L L NNKI+
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGV--LPDSIGNLKNLSRLDLARCNLSGSI 347
LS N L+ + F SL+ LML V P L+NL+ LDL+ N++
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496
Query: 348 PTSLAKLTQLVYLDLSSN------KFVGPIPSLHMSKNLTHLDLSNNALPG--AISSTDW 399
L L +L LDL N K P ++ K L+HL + N G I +
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556
Query: 400 EHLSNLVYVDLRNNALNGSIPRSLF 424
+ L L +DL N LN ++P S+F
Sbjct: 557 KDLFELKIIDLGLNNLN-TLPASVF 580
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 156/385 (40%), Gaps = 81/385 (21%)
Query: 443 IPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL----NGTVQLA--- 495
+P + YS L +LD+ N + P +L LK+L L N+L + T
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99
Query: 496 --------AIQRL--------RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
+IQ++ +NLI L+LS+N L+ G ++ L L++ K++
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 540 IP----NLKSQSKLFNLDLSDNQISGEIPNWVWEIGN------GGLEYXXXXXXXXXXXQ 589
+ ++ + S L L+LS NQI P IG ++
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 590 RPYSISDLNL--------------------MTVLDLHSNQLQ--GNIPH---PPRNAVLV 624
SI +L+L +T+LDL N L GN P +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
Query: 625 DYSN--NSFTSSIPGDIGNSMNFTIFFSLSSNSIT-GVIPE----TICRAKYLLVLDLSN 677
+Y+N + F+ S+ G + N + S + SI+ +P+ + K L L++ +
Sbjct: 280 EYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV-------TFP--GNCGLQTLDLNENQ 728
N + G IK + G++NL+ SLS + + TF + L L+L +N+
Sbjct: 339 NDIPG------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 729 LGGTVPKSLANCRKLEVLDLGNNKI 753
+ + + LEVLDLG N+I
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEI 417
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 287 TLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
T+D SG SL S+P P ++ + L L + + P L L+RLDL L+
Sbjct: 13 TVDCSGKSL--ASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 346 SIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAIS 395
KLTQL L L+ N+ P + ++LTH+ L NN A S
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
T+D S L +P I ++L L N++ ++ RL L RL+L N LTV
Sbjct: 13 TVDCSGKSLAS-VPTGI--PTTTQVLYLYDNRITK-LEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 516 NASGDSSFPSQVRTLRLASCKLKVIP-----NLKSQSKLFNLD 553
+G +Q+ L L +LK IP NL+S + ++ L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLN 111
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
+L LDLSSNK P + +T + L NN L + NL + DLR N
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGN 247
Query: 414 ALNGSIPRSLFS 425
+ R FS
Sbjct: 248 GFHCGTLRDFFS 259
>pdb|3SJ8|A Chain A, Crystal Structure Of The 3c Protease From Coxsackievirus
A16
pdb|3SJI|A Chain A, Crystal Structure Of Cva16 3c In Complex With Rupintrivir
(Ag7088)
Length = 190
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 656 ITGVIPETICRAK-YLLVLDLSNNKLSGKMPTCLIKMSDIL--GVLNLRGNSLSGTLSVT 712
+T IPETI A L+++ + MP+ + + D++ G LNL G T+
Sbjct: 87 VTKFIPETITGASDATLIINTEH------MPSMFVPVGDVVQYGFLNLSGKPTHRTMMYN 140
Query: 713 FP---GNCG 718
FP G CG
Sbjct: 141 FPTKAGQCG 149
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 310 RTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL-AKLTQLVYLDLSSNKFV 368
+ L L+ + + P +L NL +L L+ +IPT + KLTQL LDL+ N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 369 G-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406
P + K+LTH+ L NN P D +L N V
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN--PWDCECRDIMYLRNWV 131
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
+LS NR+ G + + + NLK L LS NK+ + +++L NL L+L
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDL 125
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 856 ELVKILSIFTSIDFSRNNFDGP-------IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGN 908
E V++ +++D S N G P K L+ L N G +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 909 LQQLESLDLSMNHLSDQI-------PIQL--ANLTF-------------LSVLNLSHNNL 946
QL+ LDLS N L D P QL NL+F LSVL+LS+N L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL 286
Query: 947 EGNIPVSTQLQSFSPTSFEGN 967
+ N P +L S +GN
Sbjct: 287 DRN-PSPDELPQVGNLSLKGN 306
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 348 PTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406
P LTQL YL+L+ N+ P+ LTHL L N L +I +++L +L
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLT 115
Query: 407 YVDLRNN 413
++ L NN
Sbjct: 116 HIYLFNN 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,200,284
Number of Sequences: 62578
Number of extensions: 1045884
Number of successful extensions: 3441
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2131
Number of HSP's gapped (non-prelim): 701
length of query: 1042
length of database: 14,973,337
effective HSP length: 109
effective length of query: 933
effective length of database: 8,152,335
effective search space: 7606128555
effective search space used: 7606128555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)