Query 001624
Match_columns 1042
No_of_seqs 1125 out of 6478
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-70 3.4E-75 703.6 50.2 584 31-974 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-55 6.9E-60 562.2 40.6 512 308-969 70-583 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.1E-35 4.5E-40 317.1 8.5 367 332-777 79-451 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.9E-38 4.1E-43 326.6 -15.0 491 211-778 45-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.9E-35 6.3E-40 316.0 7.9 364 211-581 78-447 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 5.5E-39 1.2E-43 330.5 -20.0 272 302-588 40-312 (565)
7 KOG0618 Serine/threonine phosp 100.0 1E-34 2.3E-39 328.8 -3.8 506 217-801 4-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.9E-34 1.1E-38 323.4 -3.3 417 264-778 3-420 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.3E-32 7.1E-37 293.7 -1.2 368 100-513 5-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7.3E-31 1.6E-35 283.4 -2.8 362 309-777 9-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.8E-25 1.5E-29 227.0 0.3 416 477-944 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-20 3.7E-25 240.9 30.1 339 96-512 552-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 3.8E-21 8.2E-26 227.9 16.7 264 573-953 201-464 (788)
14 KOG4237 Extracellular matrix p 99.9 1.8E-23 3.9E-28 216.5 -3.8 278 211-489 67-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 6E-21 1.3E-25 226.2 17.0 266 429-764 203-468 (788)
16 PLN03210 Resistant to P. syrin 99.8 7.7E-20 1.7E-24 234.9 26.1 340 492-921 549-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 3.9E-19 8.6E-24 212.6 11.9 97 645-754 221-317 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.5E-19 1.6E-23 210.3 11.8 201 548-804 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-18 4.1E-23 193.3 1.0 135 643-778 22-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-17 4.9E-22 184.6 4.1 186 107-295 3-205 (319)
21 PLN03150 hypothetical protein; 99.6 6.2E-16 1.3E-20 185.2 11.3 117 863-979 419-538 (623)
22 KOG0617 Ras suppressor protein 99.6 8.8E-17 1.9E-21 148.0 -4.3 108 666-777 31-139 (264)
23 KOG0617 Ras suppressor protein 99.5 2.8E-16 6.1E-21 144.8 -3.2 180 716-950 32-215 (264)
24 PLN03150 hypothetical protein; 99.4 4.5E-13 9.8E-18 160.7 13.4 126 29-163 368-502 (623)
25 KOG1909 Ran GTPase-activating 99.1 8.9E-12 1.9E-16 129.0 0.7 38 330-367 269-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.1 6.9E-12 1.5E-16 137.1 -2.6 211 530-776 55-271 (722)
27 KOG1909 Ran GTPase-activating 99.1 4.9E-11 1.1E-15 123.6 2.2 252 96-390 24-310 (382)
28 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.8E-16 134.0 -1.8 175 624-811 80-254 (722)
29 PF08263 LRRNT_2: Leucine rich 99.0 5.5E-10 1.2E-14 82.0 4.1 41 31-73 1-43 (43)
30 KOG3207 Beta-tubulin folding c 99.0 9.1E-11 2E-15 124.8 -0.2 212 280-514 118-339 (505)
31 COG4886 Leucine-rich repeat (L 98.9 9.4E-10 2E-14 126.7 7.3 102 672-778 97-199 (394)
32 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.2E-15 123.2 -0.6 208 328-560 118-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.8 1.1E-09 2.4E-14 107.3 1.8 128 665-797 16-146 (175)
34 COG4886 Leucine-rich repeat (L 98.8 8.5E-09 1.8E-13 118.8 7.3 197 239-469 97-294 (394)
35 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.2E-14 109.7 0.8 104 452-560 284-387 (490)
36 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.5E-13 82.2 3.6 60 887-946 2-61 (61)
37 KOG1259 Nischarin, modulator o 98.7 6.6E-09 1.4E-13 105.1 2.3 127 403-561 284-413 (490)
38 PF13855 LRR_8: Leucine rich r 98.7 1.5E-08 3.3E-13 81.5 3.8 58 695-752 3-60 (61)
39 PF14580 LRR_9: Leucine-rich r 98.7 3.5E-08 7.6E-13 96.9 6.9 111 498-611 16-126 (175)
40 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 109.6 -3.6 163 103-294 186-349 (419)
41 KOG0531 Protein phosphatase 1, 98.6 1E-08 2.2E-13 118.2 0.1 245 643-951 71-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.3E-13 120.8 4.9 249 235-489 545-807 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.6 4.2E-08 9.1E-13 120.4 4.8 270 76-363 545-827 (889)
44 KOG0531 Protein phosphatase 1, 98.5 2.7E-08 5.8E-13 114.7 -0.3 175 231-416 91-268 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-07 2.6E-12 95.0 1.7 190 177-367 24-254 (388)
46 KOG1859 Leucine-rich repeat pr 98.3 5.1E-08 1.1E-12 110.0 -3.5 177 399-587 105-293 (1096)
47 KOG4341 F-box protein containi 98.3 8.8E-08 1.9E-12 102.0 -1.8 84 306-389 345-437 (483)
48 KOG2120 SCF ubiquitin ligase, 98.2 3.7E-08 8.1E-13 99.9 -5.1 183 76-271 185-375 (419)
49 KOG1859 Leucine-rich repeat pr 98.2 9.9E-08 2.2E-12 107.7 -4.1 180 324-514 102-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.2 4.5E-07 9.8E-12 91.0 0.8 217 76-295 30-284 (388)
51 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.9E-11 88.8 -0.0 186 330-515 70-263 (418)
52 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.7E-11 89.1 -0.5 44 181-226 69-112 (418)
53 KOG4579 Leucine-rich repeat (L 98.0 4.1E-07 9E-12 81.9 -3.9 80 864-946 55-135 (177)
54 KOG3665 ZYG-1-like serine/thre 97.9 7.6E-06 1.6E-10 98.3 3.4 166 124-294 57-231 (699)
55 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 56.6 3.1 36 887-923 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 56.7 2.9 37 910-947 1-37 (44)
57 KOG4579 Leucine-rich repeat (L 97.7 2.8E-06 6E-11 76.7 -3.4 86 666-754 51-136 (177)
58 KOG4341 F-box protein containi 97.6 1.1E-05 2.4E-10 86.5 -0.4 191 174-367 181-384 (483)
59 PRK15386 type III secretion pr 97.5 0.00033 7.1E-09 77.5 8.9 55 497-557 48-104 (426)
60 PRK15386 type III secretion pr 97.5 0.00046 1E-08 76.4 9.5 71 525-609 52-123 (426)
61 KOG3665 ZYG-1-like serine/thre 97.4 0.00017 3.7E-09 86.9 6.1 110 151-272 122-233 (699)
62 KOG1644 U2-associated snRNP A' 97.3 0.0004 8.6E-09 67.6 5.8 85 526-612 43-127 (233)
63 KOG1644 U2-associated snRNP A' 97.2 0.00052 1.1E-08 66.9 5.3 104 331-436 42-149 (233)
64 PF13306 LRR_5: Leucine rich r 96.9 0.0023 5.1E-08 60.4 6.9 123 638-767 6-128 (129)
65 KOG2739 Leucine-rich acidic nu 96.8 0.0012 2.7E-08 67.3 4.2 108 101-219 42-151 (260)
66 KOG1947 Leucine rich repeat pr 96.7 0.00058 1.3E-08 81.1 1.3 61 234-294 242-306 (482)
67 PF13306 LRR_5: Leucine rich r 96.4 0.0052 1.1E-07 58.0 5.6 122 230-357 7-128 (129)
68 KOG2739 Leucine-rich acidic nu 96.0 0.0045 9.7E-08 63.3 2.7 84 526-611 44-129 (260)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.0042 9.1E-08 37.9 1.0 20 912-932 2-21 (22)
70 KOG1947 Leucine rich repeat pr 95.6 0.0025 5.4E-08 75.7 -0.8 217 150-391 187-414 (482)
71 KOG2123 Uncharacterized conser 95.5 0.0021 4.6E-08 65.6 -1.7 16 179-194 84-99 (388)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0081 1.7E-07 36.6 0.7 19 888-907 2-20 (22)
73 KOG2123 Uncharacterized conser 94.9 0.0014 2.9E-08 66.9 -5.2 86 332-420 20-105 (388)
74 KOG4308 LRR-containing protein 94.4 0.00077 1.7E-08 77.8 -9.3 93 151-247 87-184 (478)
75 KOG4308 LRR-containing protein 93.9 0.0023 5E-08 73.9 -6.8 60 237-296 235-303 (478)
76 PF13504 LRR_7: Leucine rich r 88.4 0.32 7E-06 27.4 1.5 16 526-541 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 87.6 0.021 4.5E-07 57.0 -6.2 82 76-163 42-123 (326)
78 PF13504 LRR_7: Leucine rich r 86.9 0.42 9E-06 27.0 1.3 13 669-681 2-14 (17)
79 smart00370 LRR Leucine-rich re 85.8 0.58 1.2E-05 29.8 1.8 18 910-927 2-19 (26)
80 smart00369 LRR_TYP Leucine-ric 85.8 0.58 1.2E-05 29.8 1.8 18 910-927 2-19 (26)
81 KOG0473 Leucine-rich repeat pr 85.0 0.043 9.2E-07 54.9 -5.5 84 861-947 41-124 (326)
82 PF13516 LRR_6: Leucine Rich r 84.8 0.23 5E-06 30.9 -0.4 19 910-928 2-20 (24)
83 PF13516 LRR_6: Leucine Rich r 81.7 0.45 9.7E-06 29.6 -0.0 17 741-757 2-18 (24)
84 smart00369 LRR_TYP Leucine-ric 81.3 1.1 2.5E-05 28.3 1.8 13 718-730 3-15 (26)
85 smart00370 LRR Leucine-rich re 81.3 1.1 2.5E-05 28.3 1.8 13 718-730 3-15 (26)
86 KOG3864 Uncharacterized conser 75.8 0.54 1.2E-05 46.5 -1.4 79 77-158 102-183 (221)
87 KOG3864 Uncharacterized conser 74.3 1.1 2.3E-05 44.6 0.1 36 209-244 149-185 (221)
88 smart00365 LRR_SD22 Leucine-ri 72.1 2.9 6.3E-05 26.7 1.7 15 909-923 1-15 (26)
89 smart00364 LRR_BAC Leucine-ric 55.2 8.5 0.00018 24.5 1.4 17 526-542 3-19 (26)
90 smart00368 LRR_RI Leucine rich 54.0 9.3 0.0002 24.8 1.6 14 910-923 2-15 (28)
91 PF13260 DUF4051: Protein of u 51.0 11 0.00024 27.3 1.7 17 30-46 28-44 (54)
92 PF04478 Mid2: Mid2 like cell 48.3 17 0.00037 34.4 2.9 26 999-1024 50-77 (154)
93 PF01102 Glycophorin_A: Glycop 43.7 9 0.00019 35.1 0.4 23 999-1021 65-87 (122)
94 KOG3763 mRNA export factor TAP 41.1 8.8 0.00019 44.1 -0.0 14 693-706 218-231 (585)
95 KOG4242 Predicted myosin-I-bin 39.0 96 0.0021 35.4 7.4 110 235-344 354-481 (553)
96 PF15102 TMEM154: TMEM154 prot 36.5 24 0.00053 33.2 2.0 20 1008-1027 69-88 (146)
97 KOG3763 mRNA export factor TAP 34.9 22 0.00047 41.1 1.8 62 526-587 219-284 (585)
98 PTZ00382 Variant-specific surf 29.2 34 0.00075 30.0 1.7 18 1000-1017 68-85 (96)
99 PF12606 RELT: Tumour necrosis 28.8 51 0.0011 24.9 2.3 31 1003-1033 4-34 (50)
100 smart00367 LRR_CC Leucine-rich 26.3 46 0.001 20.9 1.5 12 127-138 2-13 (26)
101 PRK10132 hypothetical protein; 25.1 47 0.001 29.9 1.8 20 1002-1021 87-106 (108)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-70 Score=703.59 Aligned_cols=584 Identities=36% Similarity=0.600 Sum_probs=376.9
Q ss_pred cHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCcccCceeeCCCCCEEEEECCCCCCccccCCCCCcccCCCCCeeeCC
Q 001624 31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLA 110 (1042)
Q Consensus 31 ~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls 110 (1042)
.++|++||++||+++.+ |. +.+++|+.+.+||.|+||+|++.++|+.|||+++.++|.+ ++.+..+++|++|+|+
T Consensus 27 ~~~~~~~l~~~~~~~~~-~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 27 HAEELELLLSFKSSIND-PL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLS 101 (968)
T ss_pred CHHHHHHHHHHHHhCCC-Cc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECC
Confidence 56899999999999964 53 4789998788999999999987789999999999999887 6677888888888888
Q ss_pred CCCCCCCCCCCccC-CCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcCccccccc
Q 001624 111 FNMFNATEIPSGLG-NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALY 189 (1042)
Q Consensus 111 ~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~ 189 (1042)
+|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+
T Consensus 102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l--------------------------------------- 139 (968)
T PLN00113 102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI--------------------------------------- 139 (968)
T ss_pred CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc---------------------------------------
Confidence 8877665 666543 777777777777777766663 222
Q ss_pred CCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCC
Q 001624 190 LDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSS 269 (1042)
Q Consensus 190 L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 269 (1042)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 140 ---------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 140 ---------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ---------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 34444455555555555666666666666666666666666666666666666666666
Q ss_pred CCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcch
Q 001624 270 GLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT 349 (1042)
Q Consensus 270 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 349 (1042)
.+.+.+|..++++++|++|++++|. +++.+|..++++++|++|++++|.+++.+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNN------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCc------------------------cCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 6665555555555555544444432 3344555555555566666655555555555
Q ss_pred hccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCC
Q 001624 350 SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPML 429 (1042)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 429 (1042)
.++++++|++|++++|.+.+. +|.. +.++++|++|++++|.+.+.+|..+..+++|
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~-----------------------~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGP-----------------------IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhCCCCCCEEECcCCeeecc-----------------------Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 555555555555555444332 2222 3344444444444444444333333333333
Q ss_pred cEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEcc
Q 001624 430 QQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509 (1042)
Q Consensus 430 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 509 (1042)
+.|++++|.+ .+..|..+..+++|
T Consensus 311 ~~L~l~~n~~-------------------------~~~~~~~~~~l~~L------------------------------- 334 (968)
T PLN00113 311 EILHLFSNNF-------------------------TGKIPVALTSLPRL------------------------------- 334 (968)
T ss_pred cEEECCCCcc-------------------------CCcCChhHhcCCCC-------------------------------
Confidence 3333322222 22222222222233
Q ss_pred CceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCC
Q 001624 510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ 589 (1042)
Q Consensus 510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~ 589 (1042)
+.|++++|.+.+.+|..+...
T Consensus 335 ----------------------------------------~~L~L~~n~l~~~~p~~l~~~------------------- 355 (968)
T PLN00113 335 ----------------------------------------QVLQLWSNKFSGEIPKNLGKH------------------- 355 (968)
T ss_pred ----------------------------------------CEEECcCCCCcCcCChHHhCC-------------------
Confidence 333333333333333322110
Q ss_pred CCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCC
Q 001624 590 RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKY 669 (1042)
Q Consensus 590 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~ 669 (1042)
++|+.|++ ++|.+++.+|..++.+++
T Consensus 356 --------~~L~~L~L----------------------------------------------s~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 356 --------NNLTVLDL----------------------------------------------STNNLTGEIPEGLCSSGN 381 (968)
T ss_pred --------CCCcEEEC----------------------------------------------CCCeeEeeCChhHhCcCC
Confidence 01222222 222222333344444555
Q ss_pred CcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECC
Q 001624 670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG 749 (1042)
Q Consensus 670 L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 749 (1042)
|+.|++++|++.+.+|..+..+ ++|+.| ++++|++++.+|..|.++++|+.|+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~-~~L~~L------------------------~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGAC-RSLRRV------------------------RLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCEEECcCCEecccCCHHHhCC-CCCCEE------------------------ECcCCEeeeECChhHhcCCCCCEEECc
Confidence 6666666666666666555443 444444 455555544455555555555555555
Q ss_pred CCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCCCCCCCCChhhhhhhhhhccccccccccc
Q 001624 750 NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829 (1042)
Q Consensus 750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~ 829 (1042)
+|++++.+|.++..+++|++|++++|++.|.+ |..+ ..++|+.||+++|+++|.+|..+
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~------------------ 495 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKL------------------ 495 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhh------------------
Confidence 55555555555555555555555555555544 2222 34677788888888887777432
Q ss_pred ccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCC
Q 001624 830 KDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNL 909 (1042)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 909 (1042)
..++.|+.|||++|+++|.+|.+++++++|+.|+|++|.++|.+|..++++
T Consensus 496 -----------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 496 -----------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred -----------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 145678899999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCcccccccccccCCCcCCeeeccCCcccccCCCCCcccccCCcccCCCCCCCCCC
Q 001624 910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAP 974 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 974 (1042)
++|+.|||++|+++|.+|..+.++++|++|++++|+++|.||...++.++...+|.||+++||.+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-55 Score=562.24 Aligned_cols=512 Identities=35% Similarity=0.515 Sum_probs=390.1
Q ss_pred CCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhcc-CCCCCCEEEccCCcccCCCCccCCCCCccEEEcc
Q 001624 308 SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA-KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLS 386 (1042)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 386 (1042)
+++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence 566777777777777777888888888888888888877776554 788888888888888776664 234677777777
Q ss_pred CCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCC
Q 001624 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466 (1042)
Q Consensus 387 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 466 (1042)
+|.+.+.+|.. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|... ..+++|+.|++++|.+.+
T Consensus 149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCC
Confidence 77777666665 7777777777777777777777777777777777777766665444322 234555555555555555
Q ss_pred CCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCC
Q 001624 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQ 546 (1042)
Q Consensus 467 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~ 546 (1042)
.+|..+.++++|++|++++|.+.+.+| .. +..+
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~----------------------------------------------l~~l 259 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIP-SS----------------------------------------------LGNL 259 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccC-hh----------------------------------------------HhCC
Confidence 555555555555555555555544333 22 3344
Q ss_pred CcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEec
Q 001624 547 SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDY 626 (1042)
Q Consensus 547 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~l 626 (1042)
++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|.
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~---------------------------~L~~L~Ls~n~l~~~~p~---------- 302 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQ---------------------------KLISLDLSDNSLSGEIPE---------- 302 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhcc---------------------------CcCEEECcCCeeccCCCh----------
Confidence 4555555555555555554443221 344444444433333221
Q ss_pred cCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccc
Q 001624 627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706 (1042)
Q Consensus 627 s~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~ 706 (1042)
.+. .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+ ++|+.|++++|+++
T Consensus 303 -----------~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 303 -----------LVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLT 369 (968)
T ss_pred -----------hHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeE
Confidence 111 24455666666666677777788888999999999999999999888876 88999999999999
Q ss_pred cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCC
Q 001624 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREN 786 (1042)
Q Consensus 707 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~ 786 (1042)
+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.+++.|+.|++++|++.|.+ +..
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~ 447 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSR 447 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--Chh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 777
Q ss_pred CCCCCcccEEeccCCCCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccE
Q 001624 787 DDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTS 866 (1042)
Q Consensus 787 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~ 866 (1042)
+..+++|+.|++++|++.|.+|... ..+.|+.
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~------------------------------------------------~~~~L~~ 479 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSF------------------------------------------------GSKRLEN 479 (968)
T ss_pred hccCCCCcEEECcCceeeeecCccc------------------------------------------------ccccceE
Confidence 7889999999999999999888421 1346889
Q ss_pred EEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcc
Q 001624 867 IDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946 (1042)
Q Consensus 867 LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l 946 (1042)
||+++|+++|.+|..+++++.|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..+++++.|+.||+++|++
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-ccccCCcccCCCCC
Q 001624 947 EGNIPVSTQ-LQSFSPTSFEGNEG 969 (1042)
Q Consensus 947 ~g~ip~~~~-~~~~~~~~~~gn~~ 969 (1042)
+|.+|.... +.......+.+|+.
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcc
Confidence 999997532 22223333445543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=317.12 Aligned_cols=367 Identities=26% Similarity=0.308 Sum_probs=228.8
Q ss_pred CCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCC-CCccEEEccCCCCCCCCCcccccCCCCccEEcc
Q 001624 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDL 410 (1042)
Q Consensus 332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 410 (1042)
.-+.||+++|.+....+..|.++++|+++++.+|.++ .+|.+... .+|+.|+|.+|.++ .+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 3456888888888888888888999999999888887 46666555 56888888888887 455555888888888888
Q ss_pred cCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCcccc
Q 001624 411 RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNG 490 (1042)
Q Consensus 411 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 490 (1042)
+.|.++..--.++..-.++++|+|++|.|+ ..-...|..+.+|..|.|+.|+++
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It-------------------------~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRIT-------------------------TLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeecccccc-------------------------ccccccccccchheeeecccCccc-
Confidence 888887433334444455666666666555 333344555555666666666665
Q ss_pred ccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCC--CCCCCcccEEECCCCCCCCCcChhHh
Q 001624 491 TVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVW 568 (1042)
Q Consensus 491 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~--l~~~~~L~~L~Ls~N~l~~~~p~~~~ 568 (1042)
.+|...|.++++|+.|+|..|+|..+....|...++|+.|.+..|++..+.+ |..+.++++|+|+.|+++..-..|++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 5565666666666666666666665555555556666666666666665554 66666666666666666655445544
Q ss_pred hhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCccccccccee
Q 001624 569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF 648 (1042)
Q Consensus 569 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~ 648 (1042)
.+. +|+.|++|+|.|..+... -+..+++|++
T Consensus 291 gLt--~L~~L~lS~NaI~rih~d-----------------------------------------------~WsftqkL~~ 321 (873)
T KOG4194|consen 291 GLT--SLEQLDLSYNAIQRIHID-----------------------------------------------SWSFTQKLKE 321 (873)
T ss_pred ccc--hhhhhccchhhhheeecc-----------------------------------------------hhhhccccee
Confidence 433 244444444444433211 1112344445
Q ss_pred eecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCC---CCCCCCCCcEEeCC
Q 001624 649 FSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV---TFPGNCGLQTLDLN 725 (1042)
Q Consensus 649 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls 725 (1042)
|+|++|+|+...+++|..+..|++|.|++|++. .+.+..+.+.++|++|||++|.+++.+.+ .|.++++|+.|+|.
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 555555555555556666666666666666665 44444444446666666666666655543 35666677777777
Q ss_pred CCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCcee
Q 001624 726 ENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777 (1042)
Q Consensus 726 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 777 (1042)
+|++..+...+|.++.+|+.|||.+|.|..+-|..|..+ .|+.|.+..-.|
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 777765555667777777777777777766666666666 666666655443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=326.60 Aligned_cols=491 Identities=29% Similarity=0.387 Sum_probs=270.9
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEC
Q 001624 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDL 290 (1042)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 290 (1042)
..+..+.+++|.+.. +.+.+.++..|.+|++.+|++.. .|.+++.+..++.++.++|++. .+|+.+..+.+|+.++.
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 467788888888774 34567888888899999888875 5777888888888898888887 78888888888888888
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCC
Q 001624 291 SGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP 370 (1042)
Q Consensus 291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 370 (1042)
++|.+.. -.+.+..+..++.++..+|+++ ..|+.+.++.+|..+++.+|++... |+..-+++.|++||...|.+...
T Consensus 122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred cccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhcC
Confidence 8886432 2334555666666666666666 4455666666666666666666633 33333366666666666666555
Q ss_pred CCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCcccc-CCCCCcEEEccCCCCCCCCCccccc
Q 001624 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNA 449 (1042)
Q Consensus 371 ~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~ 449 (1042)
.|...+..+|+.|++..|++. .+| + |..|..|+++.++.|++. .+|.... .++++..||+.+|++.. .|....
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~c- 272 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEIC- 272 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHH-
Confidence 555555566666666666665 445 2 666666666666666665 4454444 56666666666666652 332221
Q ss_pred ccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHh-----cccCCeEEccCceeeeecCCCCCCc
Q 001624 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR-----LRNLIRLELSYNNLTVNASGDSSFP 524 (1042)
Q Consensus 450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~~~ 524 (1042)
.+.+|++||+|+|.++ .+|.+++++ .|+.|-+.+|.+. ++..+.+.+ ++.|+. .+..-.++.-..+...-+
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccC
Confidence 2455666666666666 355556666 5666666666654 222221111 111111 000000000000000000
Q ss_pred ccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEe
Q 001624 525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLD 604 (1042)
Q Consensus 525 ~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 604 (1042)
+. .-..+|........+.|+++.-+++ .+|...|...... -.+..+
T Consensus 349 ------t~---~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~------------------------~Vt~Vn 394 (565)
T KOG0472|consen 349 ------TL---PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE------------------------IVTSVN 394 (565)
T ss_pred ------CC---CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc------------------------ceEEEe
Confidence 00 0002233444556677777777777 6677666543211 123333
Q ss_pred cCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCcccc
Q 001624 605 LHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKM 684 (1042)
Q Consensus 605 l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 684 (1042)
++.|++. .+|..+...-...+.+.+++|.+ +.+|..++.+++|..|++++|-+. .+
T Consensus 395 fskNqL~----------------------elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 395 FSKNQLC----------------------ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cccchHh----------------------hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hc
Confidence 3333332 23333222111122233333332 355566666666666666666665 56
Q ss_pred ChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcC
Q 001624 685 PTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNI 764 (1042)
Q Consensus 685 p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 764 (1042)
|..++.+ ..|+.||++.|++. ..|.....+..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..++++
T Consensus 451 P~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred chhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 6666554 34555555555554 33444444444455555555555444444555555555555555553 233345555
Q ss_pred CCCcEEEecCceee
Q 001624 765 SSLRVLVLRSNSFY 778 (1042)
Q Consensus 765 ~~L~~L~L~~N~l~ 778 (1042)
++|++|++.+|+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 55555555555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=316.01 Aligned_cols=364 Identities=26% Similarity=0.307 Sum_probs=323.9
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEC
Q 001624 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDL 290 (1042)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 290 (1042)
+.-+.|++++|.+....+..|.++++|+.+++..|.++. +|.......+|+.|+|.+|.+...-.+++..++.|++|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 577889999999999999999999999999999999885 7776666777999999999999888889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCC
Q 001624 291 SGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP 370 (1042)
Q Consensus 291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 370 (1042)
|.|.+.....+.|+.-.++++|+|++|+|+..-...|.++.+|..|.|++|+++...+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999999999999999999999999999998889999999999999999999987778999999999999999998643
Q ss_pred -CCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCccccc
Q 001624 371 -IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449 (1042)
Q Consensus 371 -~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 449 (1042)
.-.+.+.++|+.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-..++.++++|+.|+++.|.|.. +....+.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Ws 314 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWS 314 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhh
Confidence 234556699999999999997 6667779999999999999999998778899999999999999999884 4444455
Q ss_pred ccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCC---CCCCccc
Q 001624 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASG---DSSFPSQ 526 (1042)
Q Consensus 450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~ 526 (1042)
.+++|++|+|++|+++...+..|..+..|++|+|++|.+. .+...+|..+++|++|||+.|.++..... .+..+++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 6899999999999999988999999999999999999997 78889999999999999999999854433 3777889
Q ss_pred ccEEEeCCCCCCCCCC--CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEcc
Q 001624 527 VRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLS 581 (1042)
Q Consensus 527 L~~L~L~~n~l~~lp~--l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 581 (1042)
|+.|.+.+|+++.||. +..+..|++|||.+|.|...-|+.+... .|+.|.+.
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMN 447 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhc
Confidence 9999999999999998 9999999999999999998777776543 36666553
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.5e-39 Score=330.53 Aligned_cols=272 Identities=26% Similarity=0.369 Sum_probs=184.6
Q ss_pred CCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCcc
Q 001624 302 DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT 381 (1042)
Q Consensus 302 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 381 (1042)
.+..-..++.+.+++|.+.. +.+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|.+....+......++.
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 33344455566666665552 3334566666666677666666 456666666666666777766665554455556666
Q ss_pred EEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeeccc
Q 001624 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSA 461 (1042)
Q Consensus 382 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 461 (1042)
.++++.|.+. .++++ ++.+-.|+.++..+|+++ ..|..++++.++..+++.+|++....|.... +..|+++|...
T Consensus 118 ~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~ 192 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNS 192 (565)
T ss_pred hhhcccccee-ecCch-HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccch
Confidence 6666666665 44444 666777777777777776 5666777777777777777777644443332 66777777777
Q ss_pred ccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCC
Q 001624 462 NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP 541 (1042)
Q Consensus 462 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp 541 (1042)
|.++ .+|..++.+.+|+.|++..|++. .+| .|.+|..|++++++.|++..++.+.....+++..|++++|+++++|
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 7665 67778888888888888888886 555 5778888888888888887777766666667778888888888888
Q ss_pred C-CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccC
Q 001624 542 N-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL 588 (1042)
Q Consensus 542 ~-l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 588 (1042)
. +.-+.+|.+||+|+|.|+ .+|-.++.+ .|+.|-+.+|.+..+
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTI 312 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHH
Confidence 7 666777888888888887 455555544 366777777776654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1e-34 Score=328.79 Aligned_cols=506 Identities=28% Similarity=0.296 Sum_probs=338.3
Q ss_pred EccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCC
Q 001624 217 SLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLL 296 (1042)
Q Consensus 217 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~ 296 (1042)
|.+.+.+. .+|..+..-..++.|+++.|.+....-+...+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 33444443 34444444444666666666554433344444555777777777765 66777777777777777777654
Q ss_pred CCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCC
Q 001624 297 RGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM 376 (1042)
Q Consensus 297 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 376 (1042)
..+ .....+.+|+++.|..|.+. ..|.++..+++|+.|+++.|.+. .+|..+..++.++.+..++|......+.
T Consensus 82 ~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--- 155 (1081)
T KOG0618|consen 82 SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ--- 155 (1081)
T ss_pred hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence 433 34455677777777777666 67778888888888888888887 6777777888888888888832222211
Q ss_pred CCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCe
Q 001624 377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT 456 (1042)
Q Consensus 377 ~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 456 (1042)
..++.+++..|.+.+.++.+ ..+++. .++|++|.+. -..+..++.|+.+....|++... ...-++|+.
T Consensus 156 -~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~ 223 (1081)
T KOG0618|consen 156 -TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTA 223 (1081)
T ss_pred -ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-----EecCcchhe
Confidence 23777777777777766655 555555 6888888775 23456677778888777776521 113467888
Q ss_pred eecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCC
Q 001624 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536 (1042)
Q Consensus 457 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 536 (1042)
|+.++|.++...+.. --.+|+++++++|+++ .+| .++..+.+|+.++..+|+++.++...+. ..+|+.|.+..|.
T Consensus 224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRISR-ITSLVSLSAAYNE 298 (1081)
T ss_pred eeeccCcceeecccc--ccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHhh-hhhHHHHHhhhhh
Confidence 888888877433322 2247888888888887 566 7788888888888888888655544333 3478888999999
Q ss_pred CCCCCC-CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCC
Q 001624 537 LKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP 615 (1042)
Q Consensus 537 l~~lp~-l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 615 (1042)
++.+|. +...+.|++|||..|++. .+|..+......++..|+.+.|++...+..
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~------------------------ 353 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY------------------------ 353 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc------------------------
Confidence 999988 666899999999999998 666665554444466666666665554311
Q ss_pred CCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcc
Q 001624 616 HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL 695 (1042)
Q Consensus 616 ~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L 695 (1042)
-....+.|+.|++.+|.++...-+.+.+...|++|+|++|++. .+|+....-+..|
T Consensus 354 -----------------------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L 409 (1081)
T KOG0618|consen 354 -----------------------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL 409 (1081)
T ss_pred -----------------------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHh
Confidence 0112455666777777777766667777788888888888886 6777665555778
Q ss_pred cEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCc
Q 001624 696 GVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775 (1042)
Q Consensus 696 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 775 (1042)
+.|+||+|+++. +|.++.++..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++|||++|
T Consensus 410 eeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 410 EELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 888888888874 4577778888888888888887 566 7778888888888888887543222222378888888888
Q ss_pred eeeeeccCCCCCCCCCcccEEeccCC
Q 001624 776 SFYGSITCRENDDSWPMLQIVDIASN 801 (1042)
Q Consensus 776 ~l~~~i~~~~~~~~l~~L~~Ldls~N 801 (1042)
.-.-. .-..+..+..+..+|+.-|
T Consensus 487 ~~l~~--d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 487 TRLVF--DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccccc--chhhhHHhhhhhheecccC
Confidence 63110 0223444555555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.9e-34 Score=323.41 Aligned_cols=417 Identities=29% Similarity=0.398 Sum_probs=223.9
Q ss_pred EEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCC
Q 001624 264 LNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343 (1042)
Q Consensus 264 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 343 (1042)
+|++.+.+. .+|..+..-..++.|++..|.+...+.+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 344444444 45555554444666666666544433333333334555555555544 3445555555556666665555
Q ss_pred CCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccc
Q 001624 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423 (1042)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 423 (1042)
. ..|.+..++.+|+++.|.+|.+. ..|.. +..+.+|++|+++.|.+. .+|..+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence 5 34455555555555555555444 33433 555666666666666654 555556
Q ss_pred cCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccC
Q 001624 424 FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503 (1042)
Q Consensus 424 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L 503 (1042)
..+..++.+..++|.....++. ..++.+++..|.+.+.++..+..++. .|++++|.+. . ..+..+.+|
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l 201 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANL 201 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccch
Confidence 5666666666666622111111 12666777777777777777777666 6888888875 2 346677888
Q ss_pred CeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCC
Q 001624 504 IRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN 583 (1042)
Q Consensus 504 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N 583 (1042)
+.+....|++..+... .++++.|+.++|.++.+..-....+|+++|+++|+++ .+|+|+..+. +|+.++..+|
T Consensus 202 ~~l~c~rn~ls~l~~~----g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~--nle~l~~n~N 274 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEIS----GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACA--NLEALNANHN 274 (1081)
T ss_pred hhhhhhhcccceEEec----CcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcc--cceEecccch
Confidence 8888888877654432 2367777777777774443344457778888888777 5567666543 3666666666
Q ss_pred ccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchh
Q 001624 584 LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPET 663 (1042)
Q Consensus 584 ~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~ 663 (1042)
+++.++.. +....+|+.+++.+|.+ . .+|+.
T Consensus 275 ~l~~lp~r--i~~~~~L~~l~~~~nel----------------------------------------------~-yip~~ 305 (1081)
T KOG0618|consen 275 RLVALPLR--ISRITSLVSLSAAYNEL----------------------------------------------E-YIPPF 305 (1081)
T ss_pred hHHhhHHH--HhhhhhHHHHHhhhhhh----------------------------------------------h-hCCCc
Confidence 66544221 12222344444444443 3 23333
Q ss_pred hhccCCCcEEEccCCcCccccChhHhhccCc-ccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCC
Q 001624 664 ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI-LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK 742 (1042)
Q Consensus 664 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 742 (1042)
....+.|++|||..|++. .+|+.+...... |..|+.+.|++.......=...+.|+.|.+.+|.++...-..+.+..+
T Consensus 306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 444555555555555554 444433332222 444555555554333111122334555555555555544444555555
Q ss_pred CcEEECCCCccccccChhhhcCCCCcEEEecCceee
Q 001624 743 LEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778 (1042)
Q Consensus 743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 778 (1042)
|++|+|++|++.......+.++..|+.|+|++|++.
T Consensus 385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred eeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 555555555554333334444555555555555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-32 Score=293.74 Aligned_cols=368 Identities=28% Similarity=0.391 Sum_probs=282.1
Q ss_pred cCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHH
Q 001624 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLL 179 (1042)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l 179 (1042)
-++..|-.|+++|.|+|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++ ..+.+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L---------~~vhGEL 74 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQL---------ISVHGEL 74 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhh---------Hhhhhhh
Confidence 35566777788888887778888888888888888888776 7888888888888888888864 2233446
Q ss_pred hcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCC
Q 001624 180 QNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF 259 (1042)
Q Consensus 180 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 259 (1042)
..++.|+.+.+..|++...++ ...+..+ ..|+.|||++|++. +.|..+.+-+++-+|+|++|+|..+....|.+++
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGi--P~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGI--PTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhccccccCCC--Cchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 778888888888887765543 2334444 78999999999998 5788899999999999999999986666788999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCcccc-ccCCccccCCCCCCEEEc
Q 001624 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS-GVLPDSIGNLKNLSRLDL 338 (1042)
Q Consensus 260 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 338 (1042)
.|-.|||++|++. .+|+.+..+.+|++|+|++|++....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 9999999999998 78889999999999999999988777788888999999999987544 468999999999999999
Q ss_pred cCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccC-C
Q 001624 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALN-G 417 (1042)
Q Consensus 339 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~-~ 417 (1042)
+.|.+. ..|+.+.++++|+.|+||+|.++..--....-.+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++ .
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccccc
Confidence 999998 7899999999999999999998854332222267777788887776 56655 777777777777777765 2
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHH
Q 001624 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAI 497 (1042)
Q Consensus 418 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~ 497 (1042)
-+|+.++.+.+|+.+..++|.+. .+|..++.|.+|+.|.|+.|++. ++| +++
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE--------------------------lVPEglcRC~kL~kL~L~~NrLi-TLP-eaI 358 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE--------------------------LVPEGLCRCVKLQKLKLDHNRLI-TLP-EAI 358 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc--------------------------cCchhhhhhHHHHHhccccccee-ech-hhh
Confidence 46677777666666666666554 45555555555555555555554 333 344
Q ss_pred HhcccCCeEEccCcee
Q 001624 498 QRLRNLIRLELSYNNL 513 (1042)
Q Consensus 498 ~~l~~L~~L~Ls~n~l 513 (1042)
.-++.|+.||+..|.-
T Consensus 359 HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhcCCcceeeccCCcC
Confidence 5555555555555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.3e-31 Score=283.37 Aligned_cols=362 Identities=30% Similarity=0.414 Sum_probs=228.3
Q ss_pred CcEEEcCCcccc-ccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccC
Q 001624 309 LRTLMLSYANFS-GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSN 387 (1042)
Q Consensus 309 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 387 (1042)
.+-.|+++|.++ +..|.....+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++..........+.|+.+.+..
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 444556666666 456777777777777777777776 577777777788888887777765544455556777777777
Q ss_pred CCCCC-CCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCC
Q 001624 388 NALPG-AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466 (1042)
Q Consensus 388 n~l~~-~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 466 (1042)
|++.. .||.. +..+..|+.|||+.|++. ..|..+..-+++-.|++++|+|. .||...+..+..|-.||||+|++.
T Consensus 88 N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 88 NNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred cccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 76643 34554 667777888888888877 66777777777777888877776 566666666777777888888777
Q ss_pred CCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCC-CCC
Q 001624 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN-LKS 545 (1042)
Q Consensus 467 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-l~~ 545 (1042)
.+|..+..+..|++|.|++|.+. ......+..+++|++|.+++.+-+ +..+|. +..
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT----------------------l~N~Ptsld~ 220 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT----------------------LDNIPTSLDD 220 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------------------hhcCCCchhh
Confidence 56777777888888888888775 333333333444444444443322 225665 777
Q ss_pred CCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEe
Q 001624 546 QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVD 625 (1042)
Q Consensus 546 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ 625 (1042)
+.+|..+|+|.|.+. .+|+.+..+. +|+.|+||+|+|+.+...
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~--~LrrLNLS~N~iteL~~~---------------------------------- 263 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLR--NLRRLNLSGNKITELNMT---------------------------------- 263 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhh--hhheeccCcCceeeeecc----------------------------------
Confidence 778888888888887 6777666544 355555555555443110
Q ss_pred ccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCcc
Q 001624 626 YSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSL 705 (1042)
Q Consensus 626 ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l 705 (1042)
.+.-.+|++|++|.|+++ .+|.++..+ +.|+.|.+.+|++
T Consensus 264 --------------------------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 264 --------------------------------------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKL 303 (1255)
T ss_pred --------------------------------------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcc
Confidence 111123444444444444 445544444 4455555555544
Q ss_pred c-cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCcee
Q 001624 706 S-GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777 (1042)
Q Consensus 706 ~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 777 (1042)
+ .-+|..++.+.+|+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+.+.-++.|++||++.|+-
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 4 234555666666666666666665 56666666666666666666664 3566666666666666666643
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=6.8e-25 Score=226.96 Aligned_cols=416 Identities=22% Similarity=0.208 Sum_probs=224.2
Q ss_pred cCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCC-CCCCCCCC--CCCCCcccEEE
Q 001624 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS-CKLKVIPN--LKSQSKLFNLD 553 (1042)
Q Consensus 477 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~lp~--l~~~~~L~~L~ 553 (1042)
.-..++|..|+|+ .+|..+|+.+++|++|||++|.|+.+.+..|....++.+|.+.+ |+|+.+|. |.++..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3445666666665 56666666666666666666666666666666666666655555 67777776 77777777777
Q ss_pred CCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCccccc--CCCCCCCCcEEeccCCcc
Q 001624 554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN--IPHPPRNAVLVDYSNNSF 631 (1042)
Q Consensus 554 Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~l~~l~ls~n~~ 631 (1042)
+.-|++.......++.++ ++..|.+-+|.+..+.. ..+..+..++.+.+..|.+... .|.... ++.-|.
T Consensus 147 lNan~i~Cir~~al~dL~--~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~-----~~a~~~- 217 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP--SLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLAD-----DLAMNP- 217 (498)
T ss_pred cChhhhcchhHHHHHHhh--hcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhh-----HHhhch-
Confidence 777777766666666554 36666777777766543 2355666777777777775321 111000 000010
Q ss_pred ccCCCCCcccccccceeeecccCccccccchhhhcc-CCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccC
Q 001624 632 TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA-KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710 (1042)
Q Consensus 632 ~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~ 710 (1042)
.. ........-..+.+.++...-+..|... ..+..=..+.+...+..|..-+..+++|+.|+|++|+++++-+
T Consensus 218 -----ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 218 -----IE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred -----hh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 00 0112222233344455544444443321 1221111222323334454333334666777777777776666
Q ss_pred CCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCC
Q 001624 711 VTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSW 790 (1042)
Q Consensus 711 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l 790 (1042)
.+|.+...++.|.|..|++...-...|.++..|++|+|.+|+|+...|..|..+.+|.+|+|-+|+|.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~------------ 359 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN------------ 359 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc------------
Confidence 66666666777777777666655666666666666666666666666666666666666666666553
Q ss_pred CcccEEeccCCCCCCCCChhhhhhhhhhccccccc----ccccccceeeeccccc----eeeeeEEEecCchhhhhhhcc
Q 001624 791 PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEA----QSNFKDVHFELLTDIF----YQDVVTVTWKGREMELVKILS 862 (1042)
Q Consensus 791 ~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~l~ 862 (1042)
..---.|++.|..-....... ...+..+.+....... ..+.......+.-+. ..+
T Consensus 360 --------------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~---~c~ 422 (498)
T KOG4237|consen 360 --------------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPP---PCT 422 (498)
T ss_pred --------------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCC---Ccc
Confidence 222223344442221110000 0000011100000000 000000000000000 111
Q ss_pred cc-cEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeec
Q 001624 863 IF-TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941 (1042)
Q Consensus 863 ~l-~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~l 941 (1042)
-+ +....|++.+. .+|..+- ..-..|++.+|.++ .+|.+ .++.| .+|||+|+++..--..|++|+.|.+|-+
T Consensus 423 c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlil 495 (498)
T KOG4237|consen 423 CLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLIL 495 (498)
T ss_pred hhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEE
Confidence 11 12234444444 3333221 13456788999998 67776 77888 8999999999888889999999999999
Q ss_pred cCC
Q 001624 942 SHN 944 (1042)
Q Consensus 942 s~N 944 (1042)
|||
T Consensus 496 syn 498 (498)
T KOG4237|consen 496 SYN 498 (498)
T ss_pred ecC
Confidence 997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.7e-20 Score=240.85 Aligned_cols=339 Identities=22% Similarity=0.276 Sum_probs=201.3
Q ss_pred CCcccCCCCCeeeCCCCCCCC-----CCCCCccCCCC-CCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcc
Q 001624 96 SPLLSLKYLQSLNLAFNMFNA-----TEIPSGLGNLT-NLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLK 169 (1042)
Q Consensus 96 ~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 169 (1042)
.++..+++|++|.+..+.+.. ..+|..+..++ +||.|++.++.+. .+|..+ ...+|++|++++|.+...+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~-- 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW-- 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc--
Confidence 456677777777776543211 12555555543 4677777666554 555544 3455666666554321100
Q ss_pred cCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCC
Q 001624 170 LENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSS 249 (1042)
Q Consensus 170 ~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 249 (1042)
..... +++|+.|+|++|...+.+| .++.+++|++|++++|....
T Consensus 628 ----------------------------------~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 628 ----------------------------------DGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred ----------------------------------ccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc
Confidence 00001 1455555555444333333 24555555555555554444
Q ss_pred CchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccC
Q 001624 250 PVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGN 329 (1042)
Q Consensus 250 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 329 (1042)
.+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++++| ...+.+|..
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc------------------------~~L~~~p~~--- 723 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC------------------------SRLKSFPDI--- 723 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC------------------------CCccccccc---
Confidence 455555555555555555554333444333 4445555555544 333333321
Q ss_pred CCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCccc-------CCCCcc-CCCCCccEEEccCCCCCCCCCcccccC
Q 001624 330 LKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV-------GPIPSL-HMSKNLTHLDLSNNALPGAISSTDWEH 401 (1042)
Q Consensus 330 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------~~~~~~-~~~~~L~~L~L~~n~l~~~i~~~~~~~ 401 (1042)
.++|++|++++|.+. .+|..+ .+++|++|++.++... ...+.. ...++|+.|++++|...+.+|.. +++
T Consensus 724 ~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~ 800 (1153)
T PLN03210 724 STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQN 800 (1153)
T ss_pred cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhC
Confidence 245566666666654 344433 3555666655543211 111111 12267888899888777778877 888
Q ss_pred CCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEE
Q 001624 402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKIL 481 (1042)
Q Consensus 402 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 481 (1042)
+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|.++..+++|+.|
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 9999999999887656777765 6889999999998765555543 467899999999887 678888999999999
Q ss_pred EccCCccccccchHHHHhcccCCeEEccCce
Q 001624 482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512 (1042)
Q Consensus 482 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 512 (1042)
++++|+-...++. .+..+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSL-NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence 9988654445654 46678888888888874
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.8e-21 Score=227.91 Aligned_cols=264 Identities=26% Similarity=0.299 Sum_probs=149.0
Q ss_pred CCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecc
Q 001624 573 GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLS 652 (1042)
Q Consensus 573 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~ 652 (1042)
..-..|++++|.++.+|.. +.. +++.|++.+|+++. +|..+.+|+.|++++|+++ .+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~--l~~--~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~--------------- 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDC--LPA--HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV--------------- 259 (788)
T ss_pred CCCcEEEcCCCCCCcCCcc--hhc--CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccC---------------
Confidence 3456677777777766542 222 56667777776663 4444445555555555544 2222
Q ss_pred cCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCccccc
Q 001624 653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT 732 (1042)
Q Consensus 653 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 732 (1042)
. .++|+.|++++|.++ .+|.. ++.|+.|++++|+++.. |.. .++|+.|++++|++++
T Consensus 260 ----------l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~~---p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 260 ----------L---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS- 316 (788)
T ss_pred ----------c---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccccc-ccc---ccccceeECCCCcccc-
Confidence 1 234555555555554 34431 13455555555555532 221 2345666666666653
Q ss_pred CCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCCCCCCCCChhhh
Q 001624 733 VPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCI 812 (1042)
Q Consensus 733 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~ 812 (1042)
+|... .+|+.|++++|++++ +|.. ..+|++|+|++|++.+. |.. .++|+.|++++|.+++ +|.
T Consensus 317 Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~--- 379 (788)
T PRK15387 317 LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA--- 379 (788)
T ss_pred CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc---
Confidence 23221 235555666666553 3321 13556666666665532 221 2345556666666653 331
Q ss_pred hhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccccCcccccccCCCcEEE
Q 001624 813 TSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892 (1042)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~ 892 (1042)
....|+.||+++|++++ +|... +.|+.|+
T Consensus 380 -----------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~Ld 408 (788)
T PRK15387 380 -----------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKELM 408 (788)
T ss_pred -----------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEEE
Confidence 11245667777777774 55432 4677788
Q ss_pred CCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcccccCCCC
Q 001624 893 FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS 953 (1042)
Q Consensus 893 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~ip~~ 953 (1042)
+|+|++++ +|... .+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|..
T Consensus 409 LS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 409 VSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred ccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 88888875 66543 35677888888887 57777888888888888888888877753
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-23 Score=216.51 Aligned_cols=278 Identities=20% Similarity=0.171 Sum_probs=165.7
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccC-CCCCCCchhhhhcCCCCCEEE
Q 001624 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS-SGLNGTFPETILQVHTLQTLD 289 (1042)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 289 (1042)
+.-.+++|..|.|+.+.+.+|+.+++|+.|||+.|.|+.+-|++|.++.+|..|-+.+ |+|+...-..|+.+..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5677788888888887778888888888888888888888888888888777766655 777754445677777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCC------------CcchhccCCCCC
Q 001624 290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG------------SIPTSLAKLTQL 357 (1042)
Q Consensus 290 Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~l~~L 357 (1042)
+.-|.+.-.....|..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+.. ..|..++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 77776655555566667777777777777664444467777777777777666321 112222222222
Q ss_pred CEEEccCCcccCCCCccCCC--CCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEcc
Q 001624 358 VYLDLSSNKFVGPIPSLHMS--KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435 (1042)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 435 (1042)
.-..+.+.++...-+.-+.. ..+..=-.+.+...+..|...|..+++|++|++++|++++.-+.+|.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 22222222222111111111 1111111223333445555556777777777777777776666666666777777777
Q ss_pred CCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccc
Q 001624 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN 489 (1042)
Q Consensus 436 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 489 (1042)
.|++. .+....+..+..|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+.
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 76665 333444444555555555555555555555555555555555555443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6e-21 Score=226.23 Aligned_cols=266 Identities=26% Similarity=0.332 Sum_probs=145.1
Q ss_pred CcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEc
Q 001624 429 LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508 (1042)
Q Consensus 429 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 508 (1042)
-..|+++++.++ .+|... .++|+.|++++|+++. +|. ..++|++|++++|+++ .+|. ..++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l---~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcch---hcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence 445666666665 344322 1355666666665552 332 1345555555555554 3331 1234444454
Q ss_pred cCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccC
Q 001624 509 SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL 588 (1042)
Q Consensus 509 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 588 (1042)
++|.+ +.+|.+ ..+|+.|++++|+++ .+|.. .++|+.|++++|+++.+
T Consensus 270 s~N~L------------------------~~Lp~l--p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 270 FSNPL------------------------THLPAL--PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLASL 317 (788)
T ss_pred cCCch------------------------hhhhhc--hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccccC
Confidence 44444 444431 123444444444444 22321 12345555555554444
Q ss_pred CCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccC
Q 001624 589 QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAK 668 (1042)
Q Consensus 589 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~ 668 (1042)
+.. . ..|+.|++++|++++ +|..+.+|+.|++++|++++ +|.. .++++.|++++|++++ +|.. ..
T Consensus 318 p~l--p---~~L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~-LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 318 PAL--P---SELCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCC--c---ccccccccccCcccc-ccccccccceEecCCCccCC-CCCC----Ccccceehhhcccccc-Cccc---cc
Confidence 321 0 134455555555543 44344455555555555553 3321 2345566666666664 4432 24
Q ss_pred CCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEEC
Q 001624 669 YLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL 748 (1042)
Q Consensus 669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 748 (1042)
+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|..+ .+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 5778888888877 46643 2567788888888775 44332 35777888888887 57777888888888888
Q ss_pred CCCccccccChhhhcC
Q 001624 749 GNNKIRDTFPCWLKNI 764 (1042)
Q Consensus 749 s~N~l~~~~p~~l~~l 764 (1042)
++|++++..|..+..+
T Consensus 453 s~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 453 EGNPLSERTLQALREI 468 (788)
T ss_pred CCCCCCchHHHHHHHH
Confidence 8888887777666443
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7.7e-20 Score=234.85 Aligned_cols=340 Identities=19% Similarity=0.240 Sum_probs=209.9
Q ss_pred cchHHHHhcccCCeEEccCceee------e-ecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcC
Q 001624 492 VQLAAIQRLRNLIRLELSYNNLT------V-NASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564 (1042)
Q Consensus 492 i~~~~~~~l~~L~~L~Ls~n~l~------~-~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p 564 (1042)
+...+|.++++|+.|.+..+... . ++......+.+|+.|.+.++.++.+|.-....+|++|++++|++. .+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 44456777888888877655321 1 112222345568888888888888887335677777888777766 343
Q ss_pred hhHhhhcCCCccEEEccCCc-cccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCccccc
Q 001624 565 NWVWEIGNGGLEYLNLSHNL-LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSM 643 (1042)
Q Consensus 565 ~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~ 643 (1042)
..+.. .++|+.|+++++. +..++. +..+++|+.|++++|.... .+|..+. .+
T Consensus 628 ~~~~~--l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~---------------------~lp~si~-~L 680 (1153)
T PLN03210 628 DGVHS--LTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLV---------------------ELPSSIQ-YL 680 (1153)
T ss_pred ccccc--CCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCcc---------------------ccchhhh-cc
Confidence 33222 2346666665543 333321 3334455555555554433 3343332 25
Q ss_pred ccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEe
Q 001624 644 NFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLD 723 (1042)
Q Consensus 644 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 723 (1042)
++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+.. +|..+ .+++|++|+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENLDELI 753 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccccccc
Confidence 556666666655445555544 5666777777776655455532 2466777777777653 34333 456666666
Q ss_pred CCCCcc-------cccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEE
Q 001624 724 LNENQL-------GGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIV 796 (1042)
Q Consensus 724 Ls~N~l-------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~L 796 (1042)
+.++.. ....|..+...++|+.|++++|...+.+|.+++++++|+.|++++|...+.+ |... .+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEE
Confidence 665332 1112222334467888888888777778888888888888888877655555 4433 67788888
Q ss_pred eccCCCCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccc
Q 001624 797 DIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG 876 (1042)
Q Consensus 797 dls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g 876 (1042)
++++|.....+|. ...+++.|+|++|.++
T Consensus 831 ~Ls~c~~L~~~p~--------------------------------------------------~~~nL~~L~Ls~n~i~- 859 (1153)
T PLN03210 831 DLSGCSRLRTFPD--------------------------------------------------ISTNISDLNLSRTGIE- 859 (1153)
T ss_pred ECCCCCccccccc--------------------------------------------------cccccCEeECCCCCCc-
Confidence 8887755444442 1245677888888887
Q ss_pred cCcccccccCCCcEEECCC-CcccccCCccccCCCCCCeEEccCCc
Q 001624 877 PIPEKIGRLKSLYGLNFSQ-NAFGGPIPSTIGNLQQLESLDLSMNH 921 (1042)
Q Consensus 877 ~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~LdLs~N~ 921 (1042)
.+|..++.+++|+.|+|++ |++. .+|..++.++.|+.|+++++.
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 5788888888888888887 4555 477788888888888888774
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=3.9e-19 Score=212.63 Aligned_cols=97 Identities=26% Similarity=0.380 Sum_probs=41.8
Q ss_pred cceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeC
Q 001624 645 FTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDL 724 (1042)
Q Consensus 645 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 724 (1042)
+|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. .+|+.|++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence 3444444444444 2233221 23555555555554 4444332 345555555555542 333332 24555555
Q ss_pred CCCcccccCCccccCCCCCcEEECCCCccc
Q 001624 725 NENQLGGTVPKSLANCRKLEVLDLGNNKIR 754 (1042)
Q Consensus 725 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 754 (1042)
++|++++ +|..+. ++|+.|++++|+++
T Consensus 291 s~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 291 YDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 5555542 232221 24444555555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=7.5e-19 Score=210.25 Aligned_cols=201 Identities=29% Similarity=0.398 Sum_probs=115.4
Q ss_pred cccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCC-CCCCCcEEec
Q 001624 548 KLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH-PPRNAVLVDY 626 (1042)
Q Consensus 548 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~l 626 (1042)
+...|+++++.++ .+|..+. +.++.|++++|+++.++... . ++|+.|++++|++++ +|. .+..
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l--~--~nL~~L~Ls~N~Lts-LP~~l~~~------ 242 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL--Q--GNIKTLYANSNQLTS-IPATLPDT------ 242 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh--c--cCCCEEECCCCcccc-CChhhhcc------
Confidence 4577888888887 4665432 35888888888888765422 1 267777777777663 232 2223
Q ss_pred cCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccc
Q 001624 627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706 (1042)
Q Consensus 627 s~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~ 706 (1042)
++.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 243 -------------------L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 243 -------------------IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR 296 (754)
T ss_pred -------------------ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc
Confidence 444555555554 3344332 35666666666666 4555432 35666666666666
Q ss_pred cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCC
Q 001624 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREN 786 (1042)
Q Consensus 707 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~ 786 (1042)
+. |..+. .+|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++.. + |..
T Consensus 297 ~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-L--P~~ 364 (754)
T PRK15370 297 TL-PAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-L--PET 364 (754)
T ss_pred cC-cccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-C--Chh
Confidence 43 33332 356666777776663 443332 466677777776665 444432 466666666666642 2 322
Q ss_pred CCCCCcccEEeccCCCCC
Q 001624 787 DDSWPMLQIVDIASNNFG 804 (1042)
Q Consensus 787 ~~~l~~L~~Ldls~N~l~ 804 (1042)
+ .+.|+.|++++|+++
T Consensus 365 l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 365 L--PPTITTLDVSRNALT 380 (754)
T ss_pred h--cCCcCEEECCCCcCC
Confidence 2 245666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.9e-18 Score=193.31 Aligned_cols=135 Identities=26% Similarity=0.251 Sum_probs=57.6
Q ss_pred cccceeeecccCccccc----cchhhhccCCCcEEEccCCcCcc------ccChhHhhccCcccEEECCCCccccccCCC
Q 001624 643 MNFTIFFSLSSNSITGV----IPETICRAKYLLVLDLSNNKLSG------KMPTCLIKMSDILGVLNLRGNSLSGTLSVT 712 (1042)
Q Consensus 643 ~~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 712 (1042)
+..++.++++++.+++. ++..+...+.++.++++++.+.+ .++..+.. .++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHH
Confidence 34455555555555322 33334444555566665555541 11122222 234555555555554333333
Q ss_pred CCCCCC---CcEEeCCCCcccc----cCCccccCC-CCCcEEECCCCccccc----cChhhhcCCCCcEEEecCceee
Q 001624 713 FPGNCG---LQTLDLNENQLGG----TVPKSLANC-RKLEVLDLGNNKIRDT----FPCWLKNISSLRVLVLRSNSFY 778 (1042)
Q Consensus 713 ~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 778 (1042)
+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 322222 5555555554442 122233333 4455555555554421 2223333444444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.3e-17 Score=184.59 Aligned_cols=186 Identities=23% Similarity=0.245 Sum_probs=78.0
Q ss_pred eeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCC----CchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcC
Q 001624 107 LNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQ----IPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL 182 (1042)
Q Consensus 107 L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l 182 (1042)
|+|.++.+++...+..+..+.+|++|++++|.+++. ++..+...++|++|+++++.+...+ .....+...+.++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP--RGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcc--hHHHHHHHHHHhc
Confidence 334444443333333344444455555555544322 2333334444555555444321100 0001112223334
Q ss_pred cccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC----CCccccCC-CCCCEEECCCCCCCCC----chH
Q 001624 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP----IHPSLAKL-QSLSVICLDQNDLSSP----VPE 253 (1042)
Q Consensus 183 ~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~ 253 (1042)
++|++|+++++.+.......+..+... ++|++|++++|.+++. +...+..+ ++|+.|++++|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 445555554444443333333333222 3455555555554421 11223344 5555555555555522 223
Q ss_pred hhhCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCC
Q 001624 254 FLADFFNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSL 295 (1042)
Q Consensus 254 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~ 295 (1042)
.+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 344455555555555555432 222333444555555555543
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=6.2e-16 Score=185.24 Aligned_cols=117 Identities=35% Similarity=0.620 Sum_probs=104.6
Q ss_pred cccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeecc
Q 001624 863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS 942 (1042)
Q Consensus 863 ~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls 942 (1042)
.++.|+|++|.++|.+|.+++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|+.+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCcc--cccCCcccCCCCCCCCCCCCC-CC
Q 001624 943 HNNLEGNIPVSTQL--QSFSPTSFEGNEGLCGAPLNV-CP 979 (1042)
Q Consensus 943 ~N~l~g~ip~~~~~--~~~~~~~~~gn~~lcg~~~~~-c~ 979 (1042)
+|+++|.+|..... .......+.||+++||.|... |.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975321 222345689999999986433 74
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.8e-17 Score=148.04 Aligned_cols=108 Identities=31% Similarity=0.488 Sum_probs=69.9
Q ss_pred ccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcE
Q 001624 666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV 745 (1042)
Q Consensus 666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 745 (1042)
++...+.|.+|+|+++ .+|..+..+ .+|++|++++|++. ..|.+++.++.|+.|+++-|++. ..|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3445566677777776 666666665 66777777777766 34556666777777777777776 67777777777777
Q ss_pred EECCCCcccc-ccChhhhcCCCCcEEEecCcee
Q 001624 746 LDLGNNKIRD-TFPCWLKNISSLRVLVLRSNSF 777 (1042)
Q Consensus 746 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l 777 (1042)
|||.+|++.. .+|..|..++.|+.|+|++|.|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 7777777653 3455555555555555555544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2.8e-16 Score=144.75 Aligned_cols=180 Identities=28% Similarity=0.528 Sum_probs=128.2
Q ss_pred CCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccE
Q 001624 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQI 795 (1042)
Q Consensus 716 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~ 795 (1042)
+...+.|.||+|+++ .+|..++.+.+|++|++++|++.. +|..++.++.|+.|+++-|++.- .|..++.+|.|++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc---CccccCCCchhhh
Confidence 344556666666666 555566667777777777777653 45566777777777777776642 2777888888888
Q ss_pred EeccCCCCCC-CCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcc
Q 001624 796 VDIASNNFGG-RVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874 (1042)
Q Consensus 796 Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l 874 (1042)
||+++|+++. .+|..+| .++.|+.|+|+.|.|
T Consensus 107 ldltynnl~e~~lpgnff-----------------------------------------------~m~tlralyl~dndf 139 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-----------------------------------------------YMTTLRALYLGDNDF 139 (264)
T ss_pred hhccccccccccCCcchh-----------------------------------------------HHHHHHHHHhcCCCc
Confidence 8888888764 2343221 345667788999998
Q ss_pred cccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcC---CeeeccCCcccccC
Q 001624 875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFL---SVLNLSHNNLEGNI 950 (1042)
Q Consensus 875 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L---~~L~ls~N~l~g~i 950 (1042)
. .+|+++|+++.|+.|.+..|.+- ..|.++|.|+.|+.|.+.+|+++- +|+.++++.-+ +++.+.+|...-+|
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v-lppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV-LPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee-cChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6 78999999999999999999987 579999999999999999999984 56667765433 34455566554333
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=4.5e-13 Score=160.71 Aligned_cols=126 Identities=33% Similarity=0.534 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCc----ccCceeeCCC-----CCEEEEECCCCCCccccCCCCCcc
Q 001624 29 QCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC----TWCGVDCDEA-----GRVIGLDLSEESISGRIDNSSPLL 99 (1042)
Q Consensus 29 ~~~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~~~~c----~w~gv~C~~~-----~~v~~L~L~~~~l~g~~~~~~~l~ 99 (1042)
.+.++|.+||+++|+++.. +. ..+|+ +..|| .|.||.|... .+|+.|+|+++.+.|.+ ++.++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~~----~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-PL----RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI--PNDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-cc----cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC--CHHHh
Confidence 4567899999999999864 32 14896 44453 7999999532 25999999999999988 78899
Q ss_pred cCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCC
Q 001624 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS 163 (1042)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~ 163 (1042)
++++|++|+|++|.+.+. +|..++.+++|++|||++|.+.|.+|..++++++|++|++++|.+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 999999999999999887 898899999999999999999999999998888888888888754
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=8.9e-12 Score=129.05 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCCCCEEEccCCCCCC----CcchhccCCCCCCEEEccCCcc
Q 001624 330 LKNLSRLDLARCNLSG----SIPTSLAKLTQLVYLDLSSNKF 367 (1042)
Q Consensus 330 l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l 367 (1042)
.++|++|.+.+|.++. .+...+...+.|+.|++++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4566666666666652 1222344566677777777766
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=6.9e-12 Score=137.11 Aligned_cols=211 Identities=29% Similarity=0.389 Sum_probs=135.2
Q ss_pred EEeCCCCCCCCCC---CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecC
Q 001624 530 LRLASCKLKVIPN---LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLH 606 (1042)
Q Consensus 530 L~L~~n~l~~lp~---l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~ 606 (1042)
|.|++-+++.+|. -..+..-...|++.|++. ++|..+..+. .|+.+.+.+|.+..++.+ +..+..|+++|++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~--~Le~liLy~n~~r~ip~~--i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFV--SLESLILYHNCIRTIPEA--ICNLEALTFLDLS 129 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHH--HHHHHHHHhccceecchh--hhhhhHHHHhhhc
Confidence 3344445555553 123344556788888887 6777665554 377777778877776543 3444467777777
Q ss_pred CCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccCh
Q 001624 607 SNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT 686 (1042)
Q Consensus 607 ~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 686 (1042)
.|+++ .+|..+.. --|+.+.+++|+++ .+|+.++....|..||.+.|.+. .+|.
T Consensus 130 ~NqlS----------------------~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps 183 (722)
T KOG0532|consen 130 SNQLS----------------------HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS 183 (722)
T ss_pred cchhh----------------------cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH
Confidence 77765 23333321 23566777777776 56667777777788888888876 6777
Q ss_pred hHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhh---c
Q 001624 687 CLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK---N 763 (1042)
Q Consensus 687 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~ 763 (1042)
.+..+ .+|+.|+++.|++....+ .+..+ .|..||+|+|+++ .+|-.|.+++.|++|-|.+|.++. .|..+. .
T Consensus 184 ql~~l-~slr~l~vrRn~l~~lp~-El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGk 258 (722)
T KOG0532|consen 184 QLGYL-TSLRDLNVRRNHLEDLPE-ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGK 258 (722)
T ss_pred HhhhH-HHHHHHHHhhhhhhhCCH-HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccc
Confidence 77776 677778888887775443 33333 4777888888877 677778888888888888887753 344332 2
Q ss_pred CCCCcEEEecCce
Q 001624 764 ISSLRVLVLRSNS 776 (1042)
Q Consensus 764 l~~L~~L~L~~N~ 776 (1042)
..=.++|+...++
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 3334566666653
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=4.9e-11 Score=123.63 Aligned_cols=252 Identities=23% Similarity=0.299 Sum_probs=134.4
Q ss_pred CCcccCCCCCeeeCCCCCCCCC---CCCCccCCCCCCCEEECCCC---CCCCCCchhh-------hcCCCCcEEeCCCCC
Q 001624 96 SPLLSLKYLQSLNLAFNMFNAT---EIPSGLGNLTNLTHLNLSNA---GFAGQIPIQV-------SAMTRLVTLDLSSSY 162 (1042)
Q Consensus 96 ~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~n---~~~~~~p~~l-------~~l~~L~~L~Ls~n~ 162 (1042)
+.+..+..+++++||+|.|... .+...+.+.++|+.-++|+- +....+|..+ -.+++|++||||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4566778889999999887432 13445667778888888763 1233355433 345678888888876
Q ss_pred CCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEEC
Q 001624 163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICL 242 (1042)
Q Consensus 163 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 242 (1042)
+.. -..+.+...+..+..|++|+|.+|.+...+...+.. .|.+|. .+ ...+.-+.|+++..
T Consensus 104 ~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~------al~~l~--~~-------kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 104 FGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR------ALFELA--VN-------KKAASKPKLRVFIC 164 (382)
T ss_pred cCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH------HHHHHH--HH-------hccCCCcceEEEEe
Confidence 522 123456666777788888888777766544333221 011110 00 11122234444444
Q ss_pred CCCCCCCC----chHhhhCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEc
Q 001624 243 DQNDLSSP----VPEFLADFFNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLML 314 (1042)
Q Consensus 243 s~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 314 (1042)
.+|++... +...|...+.|+.+.+..|.+... +...+.. +++|+.|||
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~------------------------~~~LevLdl 220 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH------------------------CPHLEVLDL 220 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh------------------------CCcceeeec
Confidence 44444321 122233344444444444443211 1122233 444444444
Q ss_pred CCccccc----cCCccccCCCCCCEEEccCCCCCCCcchhc-----cCCCCCCEEEccCCcccCCCC----c-cCCCCCc
Q 001624 315 SYANFSG----VLPDSIGNLKNLSRLDLARCNLSGSIPTSL-----AKLTQLVYLDLSSNKFVGPIP----S-LHMSKNL 380 (1042)
Q Consensus 315 ~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~~----~-~~~~~~L 380 (1042)
.+|.++. .+...+..+++|++|++++|.+...-..+| ...|+|+.|.+.+|.++..-. . ....+.|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 4444432 123345556677777777777764333322 236778888888887753111 0 1113778
Q ss_pred cEEEccCCCC
Q 001624 381 THLDLSNNAL 390 (1042)
Q Consensus 381 ~~L~L~~n~l 390 (1042)
+.|++++|++
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 8888888877
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.8e-11 Score=133.99 Aligned_cols=175 Identities=28% Similarity=0.382 Sum_probs=117.9
Q ss_pred EeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCC
Q 001624 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGN 703 (1042)
Q Consensus 624 l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N 703 (1042)
.|++.|+|. .+|.++. .+..|+.+.+++|.+. .+|..++++..|++|||+.|+++ .+|..++.+ -|++|-+++|
T Consensus 80 aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVSNN 153 (722)
T ss_pred hhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEecC
Confidence 344444444 4454433 2455666677777765 56777777777788888888777 677777765 3777777777
Q ss_pred ccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccC
Q 001624 704 SLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITC 783 (1042)
Q Consensus 704 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~ 783 (1042)
+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++... |+.+..+ .|..||++.|++.. |
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis~-i-- 226 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKISY-L-- 226 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCceee-c--
Confidence 776 45556667777777777777777 6677777777777777777777653 4444433 46777777777763 2
Q ss_pred CCCCCCCCcccEEeccCCCCCCCCChhh
Q 001624 784 RENDDSWPMLQIVDIASNNFGGRVPQKC 811 (1042)
Q Consensus 784 ~~~~~~l~~L~~Ldls~N~l~g~~p~~~ 811 (1042)
|..+..+..|++|-|.+|++...--+-|
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHHHH
Confidence 6777777777777777777765433333
No 29
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.97 E-value=5.5e-10 Score=82.01 Aligned_cols=41 Identities=37% Similarity=0.731 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHhcCCCCCCccccccCCCCC--CCCcccCceeeC
Q 001624 31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQS--TDCCTWCGVDCD 73 (1042)
Q Consensus 31 ~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~--~~~c~w~gv~C~ 73 (1042)
+++|++||++||+++..++. +.+.+|+.+ .+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence 36899999999999986553 589999875 799999999996
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.1e-11 Score=124.84 Aligned_cols=212 Identities=22% Similarity=0.225 Sum_probs=103.0
Q ss_pred hcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCC--cchhccCCCCC
Q 001624 280 LQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS--IPTSLAKLTQL 357 (1042)
Q Consensus 280 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L 357 (1042)
.++.+|+...|.++........ .....|++++.|||+.|-+..- +......+|+|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~-----------------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE-----------------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL 174 (505)
T ss_pred hhHHhhhheeecCccccccchh-----------------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence 4567777777776653222211 1233455555555555544421 11223455556
Q ss_pred CEEEccCCcccCCCCccC--CCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEcc
Q 001624 358 VYLDLSSNKFVGPIPSLH--MSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435 (1042)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 435 (1042)
+.|+++.|.+........ ..+.|+.|.++.|.++..--......+|+|+.|++..|.....-......+..|++|+|+
T Consensus 175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 666666555543222221 125566666666665522111223456666666666664221222222334556666666
Q ss_pred CCCCCCCCCcccccccCcCCeeecccccCCCC-CCcc-----hhccCcCCEEEccCCccccccchHHHHhcccCCeEEcc
Q 001624 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGP-IPMS-----IFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509 (1042)
Q Consensus 436 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 509 (1042)
+|++...-.......++.|+.|.++.+.+... .|+. ...+++|++|++..|++...-....+..+++|+.|.+.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 66655332222233455566666666555432 1211 23455666666666666433333344455555555555
Q ss_pred Cceee
Q 001624 510 YNNLT 514 (1042)
Q Consensus 510 ~n~l~ 514 (1042)
.|.+.
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 55544
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=9.4e-10 Score=126.70 Aligned_cols=102 Identities=30% Similarity=0.408 Sum_probs=53.2
Q ss_pred EEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCC-CCcEEeCCCCcccccCCccccCCCCCcEEECCC
Q 001624 672 VLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC-GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN 750 (1042)
Q Consensus 672 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 750 (1042)
.++++.|.+...+. .+... +.++.|++.+|+++.+.+ ...... +|+.|++++|++. .+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~-~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLEL-TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhhcc-cceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 45555555532222 22222 345556666665553332 222232 5666666666666 4445566666666666666
Q ss_pred CccccccChhhhcCCCCcEEEecCceee
Q 001624 751 NKIRDTFPCWLKNISSLRVLVLRSNSFY 778 (1042)
Q Consensus 751 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 778 (1042)
|+++...+ ..+..+.|+.|++++|++.
T Consensus 173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 173 NDLSDLPK-LLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred chhhhhhh-hhhhhhhhhheeccCCccc
Confidence 66654332 2335556666666666554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.5e-10 Score=123.25 Aligned_cols=208 Identities=25% Similarity=0.235 Sum_probs=108.4
Q ss_pred cCCCCCCEEEccCCCCCCCcc--hhccCCCCCCEEEccCCcccCCCCc---cCCCCCccEEEccCCCCCCCCCcccccCC
Q 001624 328 GNLKNLSRLDLARCNLSGSIP--TSLAKLTQLVYLDLSSNKFVGPIPS---LHMSKNLTHLDLSNNALPGAISSTDWEHL 402 (1042)
Q Consensus 328 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~i~~~~~~~l 402 (1042)
.++.+|+++.|.++.+.. .+ .....|++++.|||+.|-+....+. ....++|+.|+++.|++........-..
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~- 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL- 195 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh-
Confidence 467888888888887762 22 3556788888888888876542221 1122555666666555542222221223
Q ss_pred CCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEE
Q 001624 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM 482 (1042)
Q Consensus 403 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 482 (1042)
++.|+.|.++.|.++..--......+|+|+.|++..|.....-......+..|+.|+
T Consensus 196 -----------------------l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 196 -----------------------LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred -----------------------hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 344455555555444211112222355555555555532222222333445666666
Q ss_pred ccCCccccccchHHHHhcccCCeEEccCceeeeecCCCC------CCcccccEEEeCCCCCCCCCC---CCCCCcccEEE
Q 001624 483 LSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS------SFPSQVRTLRLASCKLKVIPN---LKSQSKLFNLD 553 (1042)
Q Consensus 483 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~lp~---l~~~~~L~~L~ 553 (1042)
|++|++...-.....+.++.|+.|+++.+.+..+...+. ...++|++|++..|++..++. +..+.+|+.|.
T Consensus 253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 666666533333345566666666666666655443332 233456666666666655544 33344455555
Q ss_pred CCCCCCC
Q 001624 554 LSDNQIS 560 (1042)
Q Consensus 554 Ls~N~l~ 560 (1042)
+..|.++
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 5555444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=1.1e-09 Score=107.33 Aligned_cols=128 Identities=31% Similarity=0.342 Sum_probs=40.4
Q ss_pred hccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccc-cCCCCC
Q 001624 665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL-ANCRKL 743 (1042)
Q Consensus 665 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L 743 (1042)
.++..++.|+|++|.|+ .|. .+...+.+|+.|++++|.|+... .+..++.|++|++++|+|+.. +..+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 34456777777777776 332 33322356777777777777543 466677788888888887743 3333 357778
Q ss_pred cEEECCCCccccccC-hhhhcCCCCcEEEecCceeeeecc-CCCCCCCCCcccEEe
Q 001624 744 EVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFYGSIT-CRENDDSWPMLQIVD 797 (1042)
Q Consensus 744 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~-~~~~~~~l~~L~~Ld 797 (1042)
++|++++|+|...-. ..++.+++|++|+|.+|++...-. -..-+..+|+|+.||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888888887765322 445667777777777776643210 001233455666655
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=8.5e-09 Score=118.77 Aligned_cols=197 Identities=37% Similarity=0.521 Sum_probs=85.4
Q ss_pred EEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCc
Q 001624 239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVH-TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYA 317 (1042)
Q Consensus 239 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 317 (1042)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+..
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-------------------- 154 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-------------------- 154 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh--------------------
Confidence 344444444322 122334455566666655555 3444444442 55555555554322
Q ss_pred cccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcc
Q 001624 318 NFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISST 397 (1042)
Q Consensus 318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~ 397 (1042)
+|..++.+++|+.|++++|++. .+|...+..+.|+.|++++|++....+.......|+++.+++|+.. .++..
T Consensus 155 -----l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 155 -----LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred -----hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence 1223334444444444444443 2232222344444444444444322111112233444444444321 11111
Q ss_pred cccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCC
Q 001624 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIP 469 (1042)
Q Consensus 398 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 469 (1042)
+.+++++..+.+.+|++. .++..+..++.++.|++++|.++. ++. .....+++.|++++|.+....|
T Consensus 228 -~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 228 -LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -hhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccch
Confidence 444555555555555544 224444555555555555555552 222 2334556666666665554444
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.5e-09 Score=109.70 Aligned_cols=104 Identities=37% Similarity=0.448 Sum_probs=69.4
Q ss_pred CcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEE
Q 001624 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLR 531 (1042)
Q Consensus 452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 531 (1042)
..|+++|+|+|.++ .+..+..-.|.++.|++++|.+. .+. .+..+++|+.||+|+|.++....+....- ++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhhc-CEeeee
Confidence 44556666666555 34445556677777777777776 332 36677777777777777776555543333 677778
Q ss_pred eCCCCCCCCCCCCCCCcccEEECCCCCCC
Q 001624 532 LASCKLKVIPNLKSQSKLFNLDLSDNQIS 560 (1042)
Q Consensus 532 L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~ 560 (1042)
+++|.+..+..+..+-+|..||+++|+|.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchh
Confidence 88887777777777777777777777765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.2e-08 Score=82.21 Aligned_cols=60 Identities=42% Similarity=0.551 Sum_probs=37.7
Q ss_pred CCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcc
Q 001624 887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946 (1042)
Q Consensus 887 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l 946 (1042)
+|+.|++++|+++...+..|..+++|++||+++|+++...|..|.+++.|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666655555666666666666666666666666666666666666666654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=6.6e-09 Score=105.07 Aligned_cols=127 Identities=30% Similarity=0.436 Sum_probs=67.0
Q ss_pred CCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEE
Q 001624 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM 482 (1042)
Q Consensus 403 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 482 (1042)
..|+++||++|.|+ .+.++..-.|.++.|+++.|.+.. +.. .+.+++|+.||+|+|.++ .+..+-..+.++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQN--LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehh--hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34555566665555 344444445555555555555441 111 123455555555555544 2222333444555555
Q ss_pred ccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCC---CCCCCCcccEEECCCCCC
Q 001624 483 LSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP---NLKSQSKLFNLDLSDNQI 559 (1042)
Q Consensus 483 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp---~l~~~~~L~~L~Ls~N~l 559 (1042)
+++|.+. . ...+.++-+|.. |++++|+|..+. .+++++.|+++.+.+|.+
T Consensus 359 La~N~iE-~--LSGL~KLYSLvn------------------------LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIE-T--LSGLRKLYSLVN------------------------LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHh-h--hhhhHhhhhhee------------------------ccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 5555553 1 123444444444 444555444333 378888899999999988
Q ss_pred CC
Q 001624 560 SG 561 (1042)
Q Consensus 560 ~~ 561 (1042)
.+
T Consensus 412 ~~ 413 (490)
T KOG1259|consen 412 AG 413 (490)
T ss_pred cc
Confidence 84
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.5e-08 Score=81.52 Aligned_cols=58 Identities=36% Similarity=0.500 Sum_probs=26.4
Q ss_pred ccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCc
Q 001624 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752 (1042)
Q Consensus 695 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 752 (1042)
|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444444444444444444444444444444444444444444444444443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=3.5e-08 Score=96.86 Aligned_cols=111 Identities=26% Similarity=0.293 Sum_probs=43.8
Q ss_pred HhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccE
Q 001624 498 QRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEY 577 (1042)
Q Consensus 498 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~ 577 (1042)
.+..++++|+|++|.|+.+..-. ....+|+.|++++|.|+.++.+..++.|++|++++|+|+. ++..+.. ..++|+.
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~-~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDK-NLPNLQE 92 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHH-H-TT--E
T ss_pred ccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHH-hCCcCCE
Confidence 34455666666666666554322 2345788888888888888888899999999999999985 4443332 2357999
Q ss_pred EEccCCccccCCCCcccccCCCceEEecCCCccc
Q 001624 578 LNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611 (1042)
Q Consensus 578 L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~ 611 (1042)
|++++|+|..+.....+..+++|+.|++.+|++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999887777888899999999999886
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-09 Score=109.57 Aligned_cols=163 Identities=23% Similarity=0.244 Sum_probs=100.3
Q ss_pred CCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcC
Q 001624 103 YLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL 182 (1042)
Q Consensus 103 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l 182 (1042)
.|++||||+..++...+-..+..|.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+. .+...+..-.+.++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------G~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------GFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc------ccchhHHHHHHHhh
Confidence 488888888777655455556778888888888888888777788888888888888764 33444555567777
Q ss_pred cccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCC
Q 001624 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLT 262 (1042)
Q Consensus 183 ~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 262 (1042)
+.|.+|+++.|.+....... .+...-++|+.|+++++.-. -....+..-...+++|.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLV 316 (419)
T ss_pred hhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCcee
Confidence 77777777777654432211 12222245555555554211 00111222234566777
Q ss_pred EEEccCCC-CCCCchhhhhcCCCCCEEECCCCC
Q 001624 263 SLNLSSSG-LNGTFPETILQVHTLQTLDLSGNS 294 (1042)
Q Consensus 263 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~ 294 (1042)
+|||++|. ++......+.+++.|++|.++.|.
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 77776653 333444556677777777777775
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=1e-08 Score=118.22 Aligned_cols=245 Identities=25% Similarity=0.238 Sum_probs=135.2
Q ss_pred cccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEE
Q 001624 643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTL 722 (1042)
Q Consensus 643 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 722 (1042)
+..+..+.+..|.+.. +-..++.+++|..|++.+|++.. +...+..+ .+|++|++++|+|+...+ +..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~-~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSL-VNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhh-hcchheeccccccccccc--hhhccchhhh
Confidence 3444455556665553 22235566777777777777763 33222332 567777777777776544 3344557777
Q ss_pred eCCCCcccccCCccccCCCCCcEEECCCCccccccC-hhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCC
Q 001624 723 DLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASN 801 (1042)
Q Consensus 723 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N 801 (1042)
++++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ......+..+..+++..|
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence 7777777632 334456777777777777765544 2 4566667777777776532 222333333333444444
Q ss_pred CCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcc--cccEEEccCCcccccCc
Q 001624 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILS--IFTSIDFSRNNFDGPIP 879 (1042)
Q Consensus 802 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--~l~~LdLs~N~l~g~ip 879 (1042)
.++-.-+ .. .+. .++.+++++|.+. .+|
T Consensus 219 ~i~~~~~--------------------------------------------l~-----~~~~~~L~~l~l~~n~i~-~~~ 248 (414)
T KOG0531|consen 219 KISKLEG--------------------------------------------LN-----ELVMLHLRELYLSGNRIS-RSP 248 (414)
T ss_pred cceeccC--------------------------------------------cc-----cchhHHHHHHhcccCccc-ccc
Confidence 4421100 00 001 2556666777665 333
Q ss_pred ccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccc---ccccc-ccCCCcCCeeeccCCcccccCC
Q 001624 880 EKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD---QIPIQ-LANLTFLSVLNLSHNNLEGNIP 951 (1042)
Q Consensus 880 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g---~ip~~-l~~L~~L~~L~ls~N~l~g~ip 951 (1042)
..+..+..+..|+++.|+++.. ..+.....+..+.++.|.+.. ..... .+....+....+.+|......+
T Consensus 249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 5556666677777777776543 223444556666666666552 11221 4556667777777777666554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=3.8e-08 Score=120.76 Aligned_cols=249 Identities=23% Similarity=0.226 Sum_probs=122.3
Q ss_pred CCCCEEECCCCC--CCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEE
Q 001624 235 QSLSVICLDQND--LSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTL 312 (1042)
Q Consensus 235 ~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 312 (1042)
++|++|-+.+|. +.....+.|..++.|+.|||++|.-.+.+|..++.+-+||+|++++..+.. -...+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 356666666664 344444456666666666666665555666666666666666666665431 11234556666666
Q ss_pred EcCCccccccCCccccCCCCCCEEEccCCCCC--CCcchhccCCCCCCEEEccCCcccCCCCccCCCCC----ccEEEcc
Q 001624 313 MLSYANFSGVLPDSIGNLKNLSRLDLARCNLS--GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN----LTHLDLS 386 (1042)
Q Consensus 313 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~----L~~L~L~ 386 (1042)
++..+.....+|.....+++|++|.+...... ...-..+.++..|+.+....... .........+. .+.+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence 66666544445555556777777777654321 22223444555555555533322 11111111122 2233322
Q ss_pred CCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccC------CCCCcEEEccCCCCCCCCCcccccccCcCCeeecc
Q 001624 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS------IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLS 460 (1042)
Q Consensus 387 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 460 (1042)
++... .... .+..+.+|+.|.+.++.+......+... ++++..+.+.++.....+... ...++|+.|.+.
T Consensus 703 ~~~~~-~~~~-~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~--~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 703 GCSKR-TLIS-SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL--LFAPHLTSLSLV 778 (889)
T ss_pred ccccc-eeec-ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh--hccCcccEEEEe
Confidence 23322 1112 2566777777777777765332222111 223333333333222111111 124667777776
Q ss_pred cccCCCCCCcchhccCcCCEEEccCCccc
Q 001624 461 ANRLEGPIPMSIFELKNLKILMLSSNKLN 489 (1042)
Q Consensus 461 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 489 (1042)
.+.....+......+..++.+.+..+.+.
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccc
Confidence 66655544444444555554444444443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=4.2e-08 Score=120.42 Aligned_cols=270 Identities=23% Similarity=0.278 Sum_probs=153.0
Q ss_pred CCEEEEECCCCCC-ccccCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCc
Q 001624 76 GRVIGLDLSEESI-SGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLV 154 (1042)
Q Consensus 76 ~~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 154 (1042)
..++.|=+.++.. -..+ +...+..++.|++|||++|. .+.++|+.++.|-+||+||++++.+. .+|..+++++.|.
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 3566777666542 1222 02236679999999999864 44459999999999999999999998 8999999999999
Q ss_pred EEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCC
Q 001624 155 TLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL 234 (1042)
Q Consensus 155 ~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l 234 (1042)
+||+..+... ...+.....+++||+|.+..... ..+...+..+..+ .+|+.+....... .+-..+..+
T Consensus 622 ~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~L-e~L~~ls~~~~s~--~~~e~l~~~ 689 (889)
T KOG4658|consen 622 YLNLEVTGRL--------ESIPGILLELQSLRVLRLPRSAL-SNDKLLLKELENL-EHLENLSITISSV--LLLEDLLGM 689 (889)
T ss_pred eecccccccc--------ccccchhhhcccccEEEeecccc-ccchhhHHhhhcc-cchhhheeecchh--HhHhhhhhh
Confidence 9999986521 12245577799999998876652 2222233333333 6666666544332 111122222
Q ss_pred CCCC----EEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhc------CCCCCEEECCCCCCCCCCCCCC-
Q 001624 235 QSLS----VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ------VHTLQTLDLSGNSLLRGSLPDF- 303 (1042)
Q Consensus 235 ~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~~~~~~~~~- 303 (1042)
+.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++.. ...+.+
T Consensus 690 ~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~ 766 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWL 766 (889)
T ss_pred HHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchh
Confidence 3222 2222222222 23445667777888888777765322111110 12222222222211 111111
Q ss_pred CCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCC-cchhccCCCCCCEEEcc
Q 001624 304 PKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS-IPTSLAKLTQLVYLDLS 363 (1042)
Q Consensus 304 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls 363 (1042)
...++|+.|.+..+.....+.+....+..++.+.+..+.+.+. .-...+.++++..+.++
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 2356777777777766555555555555566555666655544 23334444444444443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=2.7e-08 Score=114.67 Aligned_cols=175 Identities=29% Similarity=0.370 Sum_probs=90.4
Q ss_pred ccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCc
Q 001624 231 LAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLR 310 (1042)
Q Consensus 231 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 310 (1042)
+..+++|+.|++.+|.+.... ..+..+++|++|++++|.++...+ +..++.|+.|++++|.+.. +..+..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhh
Confidence 555666666666666665431 114556666666666666653322 3444556666666665432 33344456666
Q ss_pred EEEcCCccccccCC-ccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCC--ccEEEccC
Q 001624 311 TLMLSYANFSGVLP-DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN--LTHLDLSN 387 (1042)
Q Consensus 311 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--L~~L~L~~ 387 (1042)
.+++++|.++..-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++.. ........ |+.+++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec-cCcccchhHHHHHHhccc
Confidence 66666666654433 1 3556666666666666652 22333344444445555555421 11111122 55666666
Q ss_pred CCCCCCCCcccccCCCCccEEcccCcccC
Q 001624 388 NALPGAISSTDWEHLSNLVYVDLRNNALN 416 (1042)
Q Consensus 388 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 416 (1042)
|++. .++. .+..+..+..+++.+|.+.
T Consensus 242 n~i~-~~~~-~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 242 NRIS-RSPE-GLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred Cccc-cccc-cccccccccccchhhcccc
Confidence 6554 2211 1445555555665555554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=1.2e-07 Score=95.00 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=107.6
Q ss_pred HHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC----C-------CccccCCCCCCEEECCCC
Q 001624 177 GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP----I-------HPSLAKLQSLSVICLDQN 245 (1042)
Q Consensus 177 ~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~----~-------~~~l~~l~~L~~L~Ls~n 245 (1042)
+.+..+..+.+++++||.+.....+|+...-.-..+|+..+++.-. +|. + .+.+.+|++|++.+||+|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3345566777777777777766666665443333777777776532 221 1 245678889999999999
Q ss_pred CCCCCchHh----hhCCCCCCEEEccCCCCCCC----chhhh---------hcCCCCCEEECCCCCCCCCCCCC----CC
Q 001624 246 DLSSPVPEF----LADFFNLTSLNLSSSGLNGT----FPETI---------LQVHTLQTLDLSGNSLLRGSLPD----FP 304 (1042)
Q Consensus 246 ~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~Ls~n~~~~~~~~~----~~ 304 (1042)
.+....|+. +++-+.|++|.+++|.+... +..++ ..-+.|++.+...|++..++... +.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 887665543 45677899999998887522 22222 23466777777777665544321 22
Q ss_pred CCCCCcEEEcCCccccccC-----CccccCCCCCCEEEccCCCCCCC----cchhccCCCCCCEEEccCCcc
Q 001624 305 KNSSLRTLMLSYANFSGVL-----PDSIGNLKNLSRLDLARCNLSGS----IPTSLAKLTQLVYLDLSSNKF 367 (1042)
Q Consensus 305 ~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 367 (1042)
.-..|+++.+..|.|.-.- -..+..+.+|+.||+.+|.++.. +..++...+.|+.|.+..|-+
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 2245566666655443110 11223455566666666655421 122333344455555555544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=5.1e-08 Score=110.02 Aligned_cols=177 Identities=28% Similarity=0.349 Sum_probs=127.3
Q ss_pred ccCCCCccEEcccCcccCCcCCccccCC-CCCcEEEccCCCCC----------CCCCcccccccCcCCeeecccccCCCC
Q 001624 399 WEHLSNLVYVDLRNNALNGSIPRSLFSI-PMLQQLLLANNKFG----------GPIPEFSNASYSALDTLDLSANRLEGP 467 (1042)
Q Consensus 399 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 467 (1042)
+..+.+|++|.+.++.+.. ...+..+ .+|++|-. .|.+. |.+... .....|...+.++|.+. .
T Consensus 105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhHH-h
Confidence 6677889999999888753 1112111 13333322 11111 111100 01345778888999887 5
Q ss_pred CCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCC
Q 001624 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS 547 (1042)
Q Consensus 468 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~ 547 (1042)
...++.-++.|+.|+|++|+++. + +.+..+++|++|||++|.++.++......+ .|+.|.+++|.++++-++.++.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~-v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK-V--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh-h--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhh
Confidence 66678888999999999999973 3 478999999999999999998887776666 4999999999999999999999
Q ss_pred cccEEECCCCCCCCCcC-hhHhhhcCCCccEEEccCCcccc
Q 001624 548 KLFNLDLSDNQISGEIP-NWVWEIGNGGLEYLNLSHNLLSS 587 (1042)
Q Consensus 548 ~L~~L~Ls~N~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~~ 587 (1042)
+|+.||+++|-+.+.-. ..+|.+. .|+.|+|.+|.+-.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs--~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLS--SLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHH--HHHHHhhcCCcccc
Confidence 99999999998875321 1233332 48999999998764
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=8.8e-08 Score=102.01 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCCCcEEEcCCcccc--ccCCccccCCCCCCEEEccCCCCCCCc-----chhccCCCCCCEEEccCCcccCC--CCccCC
Q 001624 306 NSSLRTLMLSYANFS--GVLPDSIGNLKNLSRLDLARCNLSGSI-----PTSLAKLTQLVYLDLSSNKFVGP--IPSLHM 376 (1042)
Q Consensus 306 l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~ 376 (1042)
++.|+.+++..+... +.+...-.+++.|++|.++++...... ...-..+..|+.+.+++++.... ......
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 455555555544322 111111234556666666655432111 11122345566666666654321 122233
Q ss_pred CCCccEEEccCCC
Q 001624 377 SKNLTHLDLSNNA 389 (1042)
Q Consensus 377 ~~~L~~L~L~~n~ 389 (1042)
+++|+.+++-.++
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 3566666666654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.7e-08 Score=99.89 Aligned_cols=183 Identities=24% Similarity=0.251 Sum_probs=124.4
Q ss_pred CCEEEEECCCCCCccc-cCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCC-CCCC-CchhhhcCCC
Q 001624 76 GRVIGLDLSEESISGR-IDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAG-FAGQ-IPIQVSAMTR 152 (1042)
Q Consensus 76 ~~v~~L~L~~~~l~g~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~-~p~~l~~l~~ 152 (1042)
.||..+||+...++-. + -.-+..+..|+.|.|.++.+.+. +...+.+-.+|+.|||+.|. |+.. .-.-+.+|+.
T Consensus 185 sRlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 4678888888776632 1 12356789999999999999876 77788999999999999975 4422 2234578999
Q ss_pred CcEEeCCCCCCCCCCcccCCCChHHHHhc-CcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCc-CCCCCCcc
Q 001624 153 LVTLDLSSSYSFGGPLKLENPNLSGLLQN-LAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGPIHPS 230 (1042)
Q Consensus 153 L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~-l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 230 (1042)
|+.|+++.|..+...+. ..+.+ -++|+.|+++|+.- ..+...++.+...+|+|.+|||++|. ++......
T Consensus 262 L~~LNlsWc~l~~~~Vt-------v~V~hise~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVT-------VAVAHISETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HhhcCchHhhccchhhh-------HHHhhhchhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 99999999976443322 22333 25688899998742 12233556666677999999999875 33333355
Q ss_pred ccCCCCCCEEECCCCCCCCCchHh---hhCCCCCCEEEccCCCC
Q 001624 231 LAKLQSLSVICLDQNDLSSPVPEF---LADFFNLTSLNLSSSGL 271 (1042)
Q Consensus 231 l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l 271 (1042)
+.+++.|++|.++.|.. .+|.. +...+.|.+|++.++--
T Consensus 334 ~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 66777777777777753 34443 34556677777666543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=9.9e-08 Score=107.74 Aligned_cols=180 Identities=31% Similarity=0.340 Sum_probs=127.4
Q ss_pred CccccCCCCCCEEEccCCCCCCCcchhccCC-CCCCEEEccCCcc----------cCCCCccCCCCCccEEEccCCCCCC
Q 001624 324 PDSIGNLKNLSRLDLARCNLSGSIPTSLAKL-TQLVYLDLSSNKF----------VGPIPSLHMSKNLTHLDLSNNALPG 392 (1042)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l----------~~~~~~~~~~~~L~~L~L~~n~l~~ 392 (1042)
|-.+..+.+|++|.+.++.+.. ...+..+ ..|++|-- .|.+ .|.+.....-..|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567788999999999998863 1112111 13444422 1211 122222222256778888888875
Q ss_pred CCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcch
Q 001624 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSI 472 (1042)
Q Consensus 393 ~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 472 (1042)
..... +.-++.|+.|+|+.|+++.. ..+..++.|++|||+.|.+. .+|.+....+. |..|.+++|.++.. ..+
T Consensus 178 ~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhH
Confidence 33333 78888999999999998743 36778899999999999887 56666555555 89999999988743 357
Q ss_pred hccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceee
Q 001624 473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514 (1042)
Q Consensus 473 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~ 514 (1042)
.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888999999999998887777777888888999999998765
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=4.5e-07 Score=91.00 Aligned_cols=217 Identities=18% Similarity=0.174 Sum_probs=132.1
Q ss_pred CCEEEEECCCCCCccccC--CCCCcccCCCCCeeeCCCCCCCCC---CCC-------CccCCCCCCCEEECCCCCCCCCC
Q 001624 76 GRVIGLDLSEESISGRID--NSSPLLSLKYLQSLNLAFNMFNAT---EIP-------SGLGNLTNLTHLNLSNAGFAGQI 143 (1042)
Q Consensus 76 ~~v~~L~L~~~~l~g~~~--~~~~l~~l~~L~~L~Ls~n~~~~~---~lp-------~~l~~l~~L~~L~Ls~n~~~~~~ 143 (1042)
..++++||||+.+..+-. ....+.+-++|+..++|.-. ++. ++| ..+-+|++|+..+||.|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 458889999988763310 02345566788888887542 221 123 34567899999999999988777
Q ss_pred chhh----hcCCCCcEEeCCCCCCCCCCcccCC-------CChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCC
Q 001624 144 PIQV----SAMTRLVTLDLSSSYSFGGPLKLEN-------PNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPK 212 (1042)
Q Consensus 144 p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~-------~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~ 212 (1042)
|..+ ++-+.|.+|.+++|.+.. ..... ....+..++-+.|+...+..|++........+.....-..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp--~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGP--IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCc--cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 7544 566789999998886521 11110 0112224566778888888888766665554444333257
Q ss_pred ccEEEccCCcCCCCC-----CccccCCCCCCEEECCCCCCCCC----chHhhhCCCCCCEEEccCCCCCCCchhhh----
Q 001624 213 LRVLSLSSCYLSGPI-----HPSLAKLQSLSVICLDQNDLSSP----VPEFLADFFNLTSLNLSSSGLNGTFPETI---- 279 (1042)
Q Consensus 213 L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---- 279 (1042)
|+++.+..|.+.... ...+..+.+|+.||+.+|.++.. +...++..+.|+.|.+..|-++..-..++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 888888888765331 12345567788888888877643 23344555667777777776654322222
Q ss_pred h--cCCCCCEEECCCCCC
Q 001624 280 L--QVHTLQTLDLSGNSL 295 (1042)
Q Consensus 280 ~--~l~~L~~L~Ls~n~~ 295 (1042)
. ..++|+.|...+|..
T Consensus 267 ~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 267 NEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhcCCCccccccchhhh
Confidence 1 245566666665543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.3e-06 Score=88.84 Aligned_cols=186 Identities=20% Similarity=0.195 Sum_probs=113.4
Q ss_pred CCCCCEEEccCCCCCC--CcchhccCCCCCCEEEccCCcccCCCCccC-CCCCccEEEccCCCCCCCCCcccccCCCCcc
Q 001624 330 LKNLSRLDLARCNLSG--SIPTSLAKLTQLVYLDLSSNKFVGPIPSLH-MSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406 (1042)
Q Consensus 330 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 406 (1042)
++.++++||.+|.++. .+...+.++|.|+.|+++.|++...|.... ...+|+.|-|.+..+.-.-....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666652 233445677777777777777776665553 3377888888777765444444467788888
Q ss_pred EEcccCcccCCcC--Ccccc-CCCCCcEEEccCCCCCCCCC-cccccccCcCCeeecccccCCCC-CCcchhccCcCCEE
Q 001624 407 YVDLRNNALNGSI--PRSLF-SIPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSANRLEGP-IPMSIFELKNLKIL 481 (1042)
Q Consensus 407 ~L~L~~n~l~~~~--p~~l~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L 481 (1042)
.|.++.|.+.... ..... ..+.+++++...|...-... ......++++..+.+..|.+... .-..+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 8888887432110 01111 12344555554443210000 00112467788888888876542 22345566777788
Q ss_pred EccCCccccccchHHHHhcccCCeEEccCceeee
Q 001624 482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515 (1042)
Q Consensus 482 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 515 (1042)
+|+.+++..--..+++.++++|..|.++++++..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888888766666778888888888888887764
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.2e-06 Score=89.13 Aligned_cols=44 Identities=30% Similarity=0.304 Sum_probs=21.6
Q ss_pred cCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC
Q 001624 181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP 226 (1042)
Q Consensus 181 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~ 226 (1042)
..+.++++++.+|.+++.. ...++..-+|.|+.|+++.|.+...
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCc
Confidence 3455666666666655431 1122222226666666666555543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=4.1e-07 Score=81.93 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=40.0
Q ss_pred ccEEEccCCcccccCccccc-ccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeecc
Q 001624 864 FTSIDFSRNNFDGPIPEKIG-RLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS 942 (1042)
Q Consensus 864 l~~LdLs~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls 942 (1042)
++.++||+|.|.. .|+.|. ..+.++.|||++|.++ .+|+++..++.|+.|+++.|.+.. .|..+..|.+|..||.-
T Consensus 55 l~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCC
Confidence 3445555555542 222222 2235555555555555 345555555555555555555553 24444445555555555
Q ss_pred CCcc
Q 001624 943 HNNL 946 (1042)
Q Consensus 943 ~N~l 946 (1042)
.|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 5544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=7.6e-06 Score=98.28 Aligned_cols=166 Identities=18% Similarity=0.248 Sum_probs=104.8
Q ss_pred CCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCccc-CCCChHHHH------hcCcccccccCCCccCC
Q 001624 124 GNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKL-ENPNLSGLL------QNLAELRALYLDGVNIS 196 (1042)
Q Consensus 124 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~l~~~l------~~l~~L~~L~L~~~~l~ 196 (1042)
...-++...++.+.......-..+.+.. |+.|.+++-......... ...++...+ ..-.+|++|+++|...
T Consensus 57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~- 134 (699)
T KOG3665|consen 57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSEL- 134 (699)
T ss_pred hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccch-
Confidence 3444566666666555433333333333 777776654322211111 112222222 2346789999988543
Q ss_pred CcchhhHHHhhccCCCccEEEccCCcCCCC-CCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCC-C
Q 001624 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGP-IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNG-T 274 (1042)
Q Consensus 197 ~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 274 (1042)
....|...+...+|.|+.|.+++-.+... ......++++|..||+|+++++.. ..++++++|+.|.+.+-.+.. .
T Consensus 135 -~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 135 -FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred -hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh
Confidence 35578888888889999999988766433 223446788888889998888764 667888888888888777653 3
Q ss_pred chhhhhcCCCCCEEECCCCC
Q 001624 275 FPETILQVHTLQTLDLSGNS 294 (1042)
Q Consensus 275 ~p~~l~~l~~L~~L~Ls~n~ 294 (1042)
.-..+++|++|++||+|...
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hHHHHhcccCCCeeeccccc
Confidence 33467778888888888754
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.5e-05 Score=56.59 Aligned_cols=36 Identities=39% Similarity=0.598 Sum_probs=17.1
Q ss_pred CCcEEECCCCcccccCCccccCCCCCCeEEccCCccc
Q 001624 887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLS 923 (1042)
Q Consensus 887 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 923 (1042)
.|++|++++|+++ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 23444555555555555555554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=3.3e-05 Score=56.73 Aligned_cols=37 Identities=46% Similarity=0.699 Sum_probs=32.2
Q ss_pred CCCCeEEccCCcccccccccccCCCcCCeeeccCCccc
Q 001624 910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~ 947 (1042)
++|+.|++++|+|+ .+|..+++|+.|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56778999999999999999987
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=2.8e-06 Score=76.71 Aligned_cols=86 Identities=27% Similarity=0.326 Sum_probs=53.4
Q ss_pred ccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcE
Q 001624 666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV 745 (1042)
Q Consensus 666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 745 (1042)
....|+..+|++|.+. .+|..+....+..+.|++++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3344566677777776 5666665554566667777776663 3444666666666666666666 45555555666666
Q ss_pred EECCCCccc
Q 001624 746 LDLGNNKIR 754 (1042)
Q Consensus 746 L~Ls~N~l~ 754 (1042)
||..+|.+.
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 666666654
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=1.1e-05 Score=86.45 Aligned_cols=191 Identities=24% Similarity=0.209 Sum_probs=78.1
Q ss_pred ChHHHHhcCcccccccCCCc-cCCCcchhhHHHhhccCCCccEEEccCCc-CCCC-CCccccCCCCCCEEECCCCCCCCC
Q 001624 174 NLSGLLQNLAELRALYLDGV-NISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGP-IHPSLAKLQSLSVICLDQNDLSSP 250 (1042)
Q Consensus 174 ~l~~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~ 250 (1042)
.+..+-+.+++|+++++..| .+++. .+..+..-+++|++++++.|. +++. +..-..+++.++.+.+.+|.=.+.
T Consensus 181 s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l 257 (483)
T KOG4341|consen 181 SLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL 257 (483)
T ss_pred HHHHHHHhcchhhhhhhcccchhHHH---HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH
Confidence 33333444555555555442 22222 223333444666666666653 2221 112233444455555544321110
Q ss_pred --chHhhhCCCCCCEEEccCCCCCCCc--hhhhhcCCCCCEEECCCCCCCC-CCCCCC-CCCCCCcEEEcCCcc-ccccC
Q 001624 251 --VPEFLADFFNLTSLNLSSSGLNGTF--PETILQVHTLQTLDLSGNSLLR-GSLPDF-PKNSSLRTLMLSYAN-FSGVL 323 (1042)
Q Consensus 251 --~~~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~~~~-~~~~~~-~~l~~L~~L~L~~n~-l~~~~ 323 (1042)
+...=+.+..+..+++..|...... ...-..+..|+.|+.+++.... ..+..+ .++.+|+.+.++.++ ++..-
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 0001112333444554444321111 1111235556666665543211 001111 224555555555553 22211
Q ss_pred Cccc-cCCCCCCEEEccCCCCCC--CcchhccCCCCCCEEEccCCcc
Q 001624 324 PDSI-GNLKNLSRLDLARCNLSG--SIPTSLAKLTQLVYLDLSSNKF 367 (1042)
Q Consensus 324 ~~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l 367 (1042)
-..+ .+++.|+.+++..+.... .+...-.+++.|+.|.+++|..
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 1122 345667777766665431 1112223456666666666543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00033 Score=77.53 Aligned_cols=55 Identities=18% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCC-CCCCCCC-CCCCCcccEEECCCC
Q 001624 497 IQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASC-KLKVIPN-LKSQSKLFNLDLSDN 557 (1042)
Q Consensus 497 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~lp~-l~~~~~L~~L~Ls~N 557 (1042)
+..+.+++.|++++|.++.++ .+|.+|++|.+++| .++.+|. + .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 334555666666666555443 34556666666665 4555554 2 245666666666
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00046 Score=76.39 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=45.4
Q ss_pred ccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCC-ccccCCCCcccccCCCceEE
Q 001624 525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN-LLSSLQRPYSISDLNLMTVL 603 (1042)
Q Consensus 525 ~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L 603 (1042)
..++.|++++|.++.+|.+ ..+|++|.++++.--..+|..+. .+|++|++++| .+..++. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP~--------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLPE--------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh----hhhhheEccCccccccccc--------ccceE
Confidence 4688999999988888853 34688888887644445665331 35777777776 4444322 45555
Q ss_pred ecCCCc
Q 001624 604 DLHSNQ 609 (1042)
Q Consensus 604 ~l~~N~ 609 (1042)
+++.+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 554443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=0.00017 Score=86.86 Aligned_cols=110 Identities=24% Similarity=0.286 Sum_probs=75.5
Q ss_pred CCCcEEeCCCCCCCCCCcccCCCChHHHHh-cCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCc
Q 001624 151 TRLVTLDLSSSYSFGGPLKLENPNLSGLLQ-NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP 229 (1042)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~ 229 (1042)
.+|++||+++... ....|+..++ .+|.|+.|.+.+..+... ++..+..-+|+|+.||+|+++++.. .
T Consensus 122 ~nL~~LdI~G~~~-------~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-------FSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--S 189 (699)
T ss_pred HhhhhcCccccch-------hhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--H
Confidence 4566666666421 2334444443 367777777776655433 2444555558999999999888764 6
Q ss_pred cccCCCCCCEEECCCCCCCC-CchHhhhCCCCCCEEEccCCCCC
Q 001624 230 SLAKLQSLSVICLDQNDLSS-PVPEFLADFFNLTSLNLSSSGLN 272 (1042)
Q Consensus 230 ~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~ 272 (1042)
+++++++|++|.+.+-.+.. ..-..+.++++|+.||+|.....
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 78899999999998877764 34456778999999999987665
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.0004 Score=67.63 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=68.9
Q ss_pred cccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEec
Q 001624 526 QVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL 605 (1042)
Q Consensus 526 ~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 605 (1042)
....++|++|.+..++.|..++.|..|.+++|+|+..-|..... .+.|+.|.+.+|.|..+.....+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~--~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF--LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh--ccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 56678888888888888888999999999999998666653322 2469999999999988877777888889999999
Q ss_pred CCCcccc
Q 001624 606 HSNQLQG 612 (1042)
Q Consensus 606 ~~N~l~~ 612 (1042)
-+|+.+.
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 9998763
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00052 Score=66.86 Aligned_cols=104 Identities=24% Similarity=0.305 Sum_probs=58.9
Q ss_pred CCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCC-CCccEEEccCCCCCCCCCcccccCCCCccEEc
Q 001624 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409 (1042)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 409 (1042)
.+...+||++|.+.. -..|..++.|.+|.+.+|+++..-|..... ++|+.|.+.+|++.....-..+..||+|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345566666666652 134556666777777777766555554333 66777777776664322222356677777777
Q ss_pred ccCcccCCcC---CccccCCCCCcEEEccC
Q 001624 410 LRNNALNGSI---PRSLFSIPMLQQLLLAN 436 (1042)
Q Consensus 410 L~~n~l~~~~---p~~l~~l~~L~~L~L~~ 436 (1042)
+-+|+++..- ...+..+|+|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777665321 12234455555555543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.89 E-value=0.0023 Score=60.37 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=48.7
Q ss_pred CcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCC
Q 001624 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC 717 (1042)
Q Consensus 638 ~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 717 (1042)
..+..+..++.+.+.. .+...-...|.++++|+.+++.++ +. .++...+...++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3344455566666553 344444555666666666666654 43 34443333334566666644 44444445555566
Q ss_pred CCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCC
Q 001624 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSL 767 (1042)
Q Consensus 718 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 767 (1042)
+|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666554 444444555555 666665554 3333344444444444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.0012 Score=67.27 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=54.9
Q ss_pred CCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCC--CCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHH
Q 001624 101 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNA--GFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL 178 (1042)
Q Consensus 101 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~ 178 (1042)
+..|+.|++.+..++.. ..+-.|++|++|.+|.| +..+.++...-++++|++|++++|++.. .+-..-
T Consensus 42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-------lstl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-------LSTLRP 111 (260)
T ss_pred ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-------ccccch
Confidence 34444444444433322 23445667777777777 5555555555555777777777766421 111122
Q ss_pred HhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEcc
Q 001624 179 LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLS 219 (1042)
Q Consensus 179 l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~ 219 (1042)
++.+.+|..|++..|..+.. ..+-..+..++++|++|+-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l-~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNL-DDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCcccc-ccHHHHHHHHhhhhcccccc
Confidence 45555566666666554442 22333334444556555443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00058 Score=81.13 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCCCEEECCCCC-CCCCchHhhhC-CCCCCEEEccCCC-CCCCc-hhhhhcCCCCCEEECCCCC
Q 001624 234 LQSLSVICLDQND-LSSPVPEFLAD-FFNLTSLNLSSSG-LNGTF-PETILQVHTLQTLDLSGNS 294 (1042)
Q Consensus 234 l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~Ls~n~ 294 (1042)
+++|+.|+++++. ++...-..++. +++|++|.+.+|. +++.- -.....++.|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555544 33333333332 4555555544444 33221 1222334555555555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.41 E-value=0.0052 Score=57.97 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=40.2
Q ss_pred cccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q 001624 230 SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSL 309 (1042)
Q Consensus 230 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 309 (1042)
.|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455555555543 233333334555555555555443 3322223344444555555543 2222233344445555
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCC
Q 001624 310 RTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357 (1042)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 357 (1042)
+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555433 332333344444 555555543 2222333444444444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0045 Score=63.30 Aligned_cols=84 Identities=27% Similarity=0.385 Sum_probs=63.2
Q ss_pred cccEEEeCCCCCCCCCCCCCCCcccEEECCCC--CCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEE
Q 001624 526 QVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN--QISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVL 603 (1042)
Q Consensus 526 ~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N--~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 603 (1042)
.|+.+.+.++.++++..+..+++|+.|++|.| ++.+.++-..-.. ++|+++++++|++..+........+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC--CceeEEeecCCccccccccchhhhhcchhhh
Confidence 56667778888888888888899999999999 7776665544333 6799999999998876655556666677777
Q ss_pred ecCCCccc
Q 001624 604 DLHSNQLQ 611 (1042)
Q Consensus 604 ~l~~N~l~ 611 (1042)
|+.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 77776544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0042 Score=37.89 Aligned_cols=20 Identities=55% Similarity=0.745 Sum_probs=10.4
Q ss_pred CCeEEccCCcccccccccccC
Q 001624 912 LESLDLSMNHLSDQIPIQLAN 932 (1042)
Q Consensus 912 L~~LdLs~N~l~g~ip~~l~~ 932 (1042)
|+.||||+|+|+ .||.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 45544443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.62 E-value=0.0025 Score=75.67 Aligned_cols=217 Identities=24% Similarity=0.209 Sum_probs=104.4
Q ss_pred CCCCcEEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCc-cCCCcchhhHHHhhccCCCccEEEccCCc-CCCCC
Q 001624 150 MTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGV-NISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGPI 227 (1042)
Q Consensus 150 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~~ 227 (1042)
++.|+.|.+..+. .+....+......++.|++|+++++ ............+...+++|+.|+++.+. ++...
T Consensus 187 ~~~L~~l~l~~~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS------KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccc------cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 4555555555542 1222224444555666666666552 21111122222233334666666666666 44333
Q ss_pred CccccC-CCCCCEEECCCCC-CCCC-chHhhhCCCCCCEEEccCCCCCCC--chhhhhcCCCCCEEECCCCCCCCCCCCC
Q 001624 228 HPSLAK-LQSLSVICLDQND-LSSP-VPEFLADFFNLTSLNLSSSGLNGT--FPETILQVHTLQTLDLSGNSLLRGSLPD 302 (1042)
Q Consensus 228 ~~~l~~-l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 302 (1042)
-..+.. +++|++|.+..+. ++.. +-.....++.|++|++++|..... +.....++++|+.|.+.....
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 333332 5667777766555 4432 222233566777777777765311 333344566666655443321
Q ss_pred CCCCCCCcEEEcCCcccc---ccCCccccCCCCCCEEEccCCCCCCCc-chhccCCCCCCEEEccCCcccCCCCccCCCC
Q 001624 303 FPKNSSLRTLMLSYANFS---GVLPDSIGNLKNLSRLDLARCNLSGSI-PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK 378 (1042)
Q Consensus 303 ~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 378 (1042)
+..++.+.+...... ......+..+++++.+.+..+...... ...+.+++.|. ..+... .....
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~ 401 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--------LCRSD 401 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH--------hccCC
Confidence 334444444433221 122234567788888888877743222 23445555552 221111 01112
Q ss_pred CccEEEccCCCCC
Q 001624 379 NLTHLDLSNNALP 391 (1042)
Q Consensus 379 ~L~~L~L~~n~l~ 391 (1042)
.++.|+++.+...
T Consensus 402 ~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 402 SLRVLNLSDCRLV 414 (482)
T ss_pred ccceEecccCccc
Confidence 2777777777643
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0021 Score=65.56 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=7.9
Q ss_pred HhcCcccccccCCCcc
Q 001624 179 LQNLAELRALYLDGVN 194 (1042)
Q Consensus 179 l~~l~~L~~L~L~~~~ 194 (1042)
++++++|+.|+|..|.
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 4445555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.0081 Score=36.64 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=8.9
Q ss_pred CcEEECCCCcccccCCcccc
Q 001624 888 LYGLNFSQNAFGGPIPSTIG 907 (1042)
Q Consensus 888 L~~L~Ls~N~l~g~ip~~~~ 907 (1042)
|+.||||+|+++ .||+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344455555444 4444443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0014 Score=66.91 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEccc
Q 001624 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR 411 (1042)
Q Consensus 332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 411 (1042)
+.+.|++-+|.+.++ ....+++.|+.|.|+-|.++. +..+..+++|++|+|..|.|...-.-..+.++|+|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344444445544421 223445555555555555542 22233345555555555554421111225666777777777
Q ss_pred CcccCCcCC
Q 001624 412 NNALNGSIP 420 (1042)
Q Consensus 412 ~n~l~~~~p 420 (1042)
.|+..|.-+
T Consensus 97 ENPCc~~ag 105 (388)
T KOG2123|consen 97 ENPCCGEAG 105 (388)
T ss_pred cCCcccccc
Confidence 766655443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.45 E-value=0.00077 Score=77.79 Aligned_cols=93 Identities=27% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCCcEEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccC-CCccEEEccCCcCCCCCC-
Q 001624 151 TRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV-PKLRVLSLSSCYLSGPIH- 228 (1042)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~-~~L~~L~L~~n~l~~~~~- 228 (1042)
..+.+|.|.+|.+... ....+...+.....|+.|++++|++.+.+...+....... ..++.|++..|.+++...
T Consensus 87 ~~l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~ 162 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA 162 (478)
T ss_pred hhHHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH
Confidence 3477777777765332 2233444566777777788887777766555444332221 345556666666554322
Q ss_pred ---ccccCCCCCCEEECCCCCC
Q 001624 229 ---PSLAKLQSLSVICLDQNDL 247 (1042)
Q Consensus 229 ---~~l~~l~~L~~L~Ls~n~l 247 (1042)
..+.....++.++++.|.+
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccchhHHHHHhccc
Confidence 2333344444455544443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.94 E-value=0.0023 Score=73.92 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCEEECCCCCCCCC----chHhhhCC-CCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCCC
Q 001624 237 LSVICLDQNDLSSP----VPEFLADF-FNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSLL 296 (1042)
Q Consensus 237 L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~ 296 (1042)
++.+++..|.+... ....+..+ ..+++++++.|.++.. +...+..++.++++.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554432 12223333 4556666666666533 3334455666677777666543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.39 E-value=0.32 Score=27.43 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=5.8
Q ss_pred cccEEEeCCCCCCCCC
Q 001624 526 QVRTLRLASCKLKVIP 541 (1042)
Q Consensus 526 ~L~~L~L~~n~l~~lp 541 (1042)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555544443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.58 E-value=0.021 Score=57.02 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCEEEEECCCCCCccccCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcE
Q 001624 76 GRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVT 155 (1042)
Q Consensus 76 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 155 (1042)
.||+.||++.+.+... -..+..++.|..||++.|.+.- +|..++.+..++++++..|..+ ..|.+.++.+++++
T Consensus 42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 5899999999877633 3567788999999999998754 7999999999999999988877 78999999999999
Q ss_pred EeCCCCCC
Q 001624 156 LDLSSSYS 163 (1042)
Q Consensus 156 L~Ls~n~~ 163 (1042)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888753
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.87 E-value=0.42 Score=26.99 Aligned_cols=13 Identities=62% Similarity=0.797 Sum_probs=5.7
Q ss_pred CCcEEEccCCcCc
Q 001624 669 YLLVLDLSNNKLS 681 (1042)
Q Consensus 669 ~L~~L~Ls~N~l~ 681 (1042)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555666666554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.79 E-value=0.58 Score=29.76 Aligned_cols=18 Identities=50% Similarity=0.610 Sum_probs=10.2
Q ss_pred CCCCeEEccCCccccccc
Q 001624 910 QQLESLDLSMNHLSDQIP 927 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~g~ip 927 (1042)
++|+.|+|++|+|+...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.79 E-value=0.58 Score=29.76 Aligned_cols=18 Identities=50% Similarity=0.610 Sum_probs=10.2
Q ss_pred CCCCeEEccCCccccccc
Q 001624 910 QQLESLDLSMNHLSDQIP 927 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~g~ip 927 (1042)
++|+.|+|++|+|+...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.00 E-value=0.043 Score=54.90 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=71.3
Q ss_pred cccccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeee
Q 001624 861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLN 940 (1042)
Q Consensus 861 l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ 940 (1042)
....+.||+|.|++.. .-..|.-++.+..||+|.|++. ..|+.++++..+..+++..|.++ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4567789999999863 3456777888999999999987 67999999999999999999888 6789999999999999
Q ss_pred ccCCccc
Q 001624 941 LSHNNLE 947 (1042)
Q Consensus 941 ls~N~l~ 947 (1042)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999763
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.79 E-value=0.23 Score=30.92 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=9.2
Q ss_pred CCCCeEEccCCcccccccc
Q 001624 910 QQLESLDLSMNHLSDQIPI 928 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~g~ip~ 928 (1042)
++|++|||++|+|++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4555666666665554433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.72 E-value=0.45 Score=29.60 Aligned_cols=17 Identities=53% Similarity=0.645 Sum_probs=7.9
Q ss_pred CCCcEEECCCCcccccc
Q 001624 741 RKLEVLDLGNNKIRDTF 757 (1042)
Q Consensus 741 ~~L~~L~Ls~N~l~~~~ 757 (1042)
++|++|+|++|++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555555555555443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.32 E-value=1.1 Score=28.35 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.3
Q ss_pred CCcEEeCCCCccc
Q 001624 718 GLQTLDLNENQLG 730 (1042)
Q Consensus 718 ~L~~L~Ls~N~l~ 730 (1042)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.32 E-value=1.1 Score=28.35 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.3
Q ss_pred CCcEEeCCCCccc
Q 001624 718 GLQTLDLNENQLG 730 (1042)
Q Consensus 718 ~L~~L~Ls~N~l~ 730 (1042)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.80 E-value=0.54 Score=46.53 Aligned_cols=79 Identities=24% Similarity=0.237 Sum_probs=37.6
Q ss_pred CEEEEECCCCCCccccCCCCCcccCCCCCeeeCCCCCC-CCCCCCCcc-CCCCCCCEEECCCCC-CCCCCchhhhcCCCC
Q 001624 77 RVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMF-NATEIPSGL-GNLTNLTHLNLSNAG-FAGQIPIQVSAMTRL 153 (1042)
Q Consensus 77 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~lp~~l-~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L 153 (1042)
.|..+|-+++.+.++- ...+..++.++.|.+.++.- .+..+ +.+ +-.++|+.|+|++|. |+..--..+.++++|
T Consensus 102 ~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4777777777666443 34455566666666665532 11100 011 123455555555553 333223334444444
Q ss_pred cEEeC
Q 001624 154 VTLDL 158 (1042)
Q Consensus 154 ~~L~L 158 (1042)
+.|.+
T Consensus 179 r~L~l 183 (221)
T KOG3864|consen 179 RRLHL 183 (221)
T ss_pred HHHHh
Confidence 44443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.29 E-value=1.1 Score=44.59 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=19.3
Q ss_pred cCCCccEEEccCC-cCCCCCCccccCCCCCCEEECCC
Q 001624 209 LVPKLRVLSLSSC-YLSGPIHPSLAKLQSLSVICLDQ 244 (1042)
Q Consensus 209 ~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~ 244 (1042)
..++|+.|++++| +||...-..+.++++|+.|.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3356666666655 24444444455566666665544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.05 E-value=2.9 Score=26.65 Aligned_cols=15 Identities=53% Similarity=0.749 Sum_probs=10.4
Q ss_pred CCCCCeEEccCCccc
Q 001624 909 LQQLESLDLSMNHLS 923 (1042)
Q Consensus 909 l~~L~~LdLs~N~l~ 923 (1042)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.17 E-value=8.5 Score=24.52 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=10.5
Q ss_pred cccEEEeCCCCCCCCCC
Q 001624 526 QVRTLRLASCKLKVIPN 542 (1042)
Q Consensus 526 ~L~~L~L~~n~l~~lp~ 542 (1042)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666665
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.01 E-value=9.3 Score=24.80 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=8.6
Q ss_pred CCCCeEEccCCccc
Q 001624 910 QQLESLDLSMNHLS 923 (1042)
Q Consensus 910 ~~L~~LdLs~N~l~ 923 (1042)
+.|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 91
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=50.96 E-value=11 Score=27.30 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.4
Q ss_pred CcHHHHHHHHHHHhcCC
Q 001624 30 CQSDQQSLLLQMKSSLV 46 (1042)
Q Consensus 30 ~~~~~~~aLl~~k~~~~ 46 (1042)
...+||+|||+-++-+-
T Consensus 28 afrqdrdallear~kl~ 44 (54)
T PF13260_consen 28 AFRQDRDALLEARNKLF 44 (54)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 44589999999987663
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=48.28 E-value=17 Score=34.41 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=11.4
Q ss_pred eeeeehhhHHHHHHHH--HHhhhhhccc
Q 001624 999 FFIVMAIGFAVGFGSV--VAPLMFSRRV 1024 (1042)
Q Consensus 999 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 1024 (1042)
.++++++|+++.++++ +.+++||+|.
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRR 77 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEec
Confidence 4555555544443333 3333444443
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.72 E-value=9 Score=35.10 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=12.7
Q ss_pred eeeeehhhHHHHHHHHHHhhhhh
Q 001624 999 FFIVMAIGFAVGFGSVVAPLMFS 1021 (1042)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~~~~~~ 1021 (1042)
.++++++|+++|+++++++++|+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHH
Confidence 34555666666666555544444
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.07 E-value=8.8 Score=44.14 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=7.8
Q ss_pred CcccEEECCCCccc
Q 001624 693 DILGVLNLRGNSLS 706 (1042)
Q Consensus 693 ~~L~~L~Ls~N~l~ 706 (1042)
+.+..++|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34555566666654
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=39.02 E-value=96 Score=35.36 Aligned_cols=110 Identities=18% Similarity=0.105 Sum_probs=59.1
Q ss_pred CCCCEEECCCCCCCCCchHh--hhCCCCCCEEEccCCCCC-----CCchhhh----hcCCCCCEEECCCCCCCCCCC---
Q 001624 235 QSLSVICLDQNDLSSPVPEF--LADFFNLTSLNLSSSGLN-----GTFPETI----LQVHTLQTLDLSGNSLLRGSL--- 300 (1042)
Q Consensus 235 ~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~-----~~~p~~l----~~l~~L~~L~Ls~n~~~~~~~--- 300 (1042)
..+++|....|...+..... ...-+..+.+++.+-.-. +...... ....-+..+.++.|......-
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 35888888888777654332 233455667766543321 1111111 112336667777766433221
Q ss_pred CCCCCCCCCcEEEcCCccccc----cCCccccCCCCCCEEEccCCCCC
Q 001624 301 PDFPKNSSLRTLMLSYANFSG----VLPDSIGNLKNLSRLDLARCNLS 344 (1042)
Q Consensus 301 ~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~ 344 (1042)
.....-+.+.+|++++|.... .+|..+..-..++....+.|...
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 123446778888888886653 34445554556666666666554
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=36.47 E-value=24 Score=33.17 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhhcccchh
Q 001624 1008 AVGFGSVVAPLMFSRRVNKW 1027 (1042)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~ 1027 (1042)
++.+.+|+++++.+||||.+
T Consensus 69 vlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHheeEEeecccC
Confidence 33344445555556666653
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.95 E-value=22 Score=41.13 Aligned_cols=62 Identities=26% Similarity=0.205 Sum_probs=31.3
Q ss_pred cccEEEeCCCCCCCCCC----CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCcccc
Q 001624 526 QVRTLRLASCKLKVIPN----LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587 (1042)
Q Consensus 526 ~L~~L~L~~n~l~~lp~----l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~ 587 (1042)
.+..+.|++|++..+.. -...++|+.|+|++|...-....+++..+...|++|-+.+|++.+
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34444555555444443 233456777777777332222334444444445666666665543
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=29.17 E-value=34 Score=30.02 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=7.8
Q ss_pred eeeehhhHHHHHHHHHHh
Q 001624 1000 FIVMAIGFAVGFGSVVAP 1017 (1042)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~ 1017 (1042)
++++++|.++++++++++
T Consensus 68 iagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGF 85 (96)
T ss_pred EEEEEeehhhHHHHHHHH
Confidence 444444444444333333
No 99
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.81 E-value=51 Score=24.91 Aligned_cols=31 Identities=6% Similarity=-0.037 Sum_probs=18.2
Q ss_pred ehhhHHHHHHHHHHhhhhhcccchhhhhhhc
Q 001624 1003 MAIGFAVGFGSVVAPLMFSRRVNKWYNNLIN 1033 (1042)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1042)
..+..++.+.+++++.++....++.|.+.+|
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 3333344444455555555556678888888
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.30 E-value=46 Score=20.95 Aligned_cols=12 Identities=42% Similarity=0.564 Sum_probs=6.4
Q ss_pred CCCCEEECCCCC
Q 001624 127 TNLTHLNLSNAG 138 (1042)
Q Consensus 127 ~~L~~L~Ls~n~ 138 (1042)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 101
>PRK10132 hypothetical protein; Provisional
Probab=25.09 E-value=47 Score=29.88 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=13.6
Q ss_pred eehhhHHHHHHHHHHhhhhh
Q 001624 1002 VMAIGFAVGFGSVVAPLMFS 1021 (1042)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~ 1021 (1042)
|.++|+++|+++++|+++..
T Consensus 87 w~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45666777777778877654
Done!