Query 001624
Match_columns 1042
No_of_seqs 665 out of 6478
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 17:00:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001624.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_920-923//hhsearch_pdb/001624hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 774.2 47.0 734 25-981 4-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 599.7 41.2 652 211-968 50-715 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 481.6 53.9 249 645-959 382-634 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 467.4 50.6 234 694-974 382-626 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 435.9 44.3 238 666-952 323-565 (606)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 430.8 39.4 208 716-979 380-589 (844)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 425.2 41.4 211 666-952 348-563 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 421.2 42.8 212 667-927 349-564 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 415.7 38.7 60 101-161 23-83 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 414.8 38.2 118 661-780 369-488 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=774.21 Aligned_cols=734 Identities=30% Similarity=0.414 Sum_probs=408.0
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCC---CCCCCCCCCC
Q ss_conf 0147996887999999883187798764234688789997345712439999889997899998420---2799874347
Q 001624 25 LVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGR---IDNSSPLLSL 101 (1042)
Q Consensus 25 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~---~~~~~~l~~l 101 (1042)
++++++.++|++||++||+++. ||. .+++|+.+++||.|+||.|+ .+||++|+|++.++.|. + ++++.++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~~L 76 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLLSL 76 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCC---CCCCCCCCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCC--CHHHHCC
T ss_conf 7656687899999999996678-962---14687899987688413878-992789877899867755766--9657316
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 77882218888899988897568999998997989888887733--2223798809937798789998645799867997
Q 001624 102 KYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPI--QVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLL 179 (1042)
Q Consensus 102 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~~l 179 (1042)
++|+.++++.+.+.. +|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+
T Consensus 77 ~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l---------------- 138 (768)
T 3rgz_A 77 TGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---------------- 138 (768)
T ss_dssp TTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE----------------
T ss_pred CCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC----------------
T ss_conf 802246786888678--70332457889989898985787078967872788999898968826----------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHH---H
Q ss_conf 2273454013898568875033678863049995299935876889998543-69999988978899999983475---4
Q 001624 180 QNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSL-AKLQSLSVICLDQNDLSSPVPEF---L 255 (1042)
Q Consensus 180 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~---l 255 (1042)
.+..+..+ .++++|++|++++|.+++..+.. +
T Consensus 139 --------------------------------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 139 --------------------------------------------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp --------------------------------------------ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred --------------------------------------------CCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf --------------------------------------------774797785638899989897983588587155664
Q ss_pred HCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 18999879994388899994154316898789977799999989999999998858985771136448723568999999
Q 001624 256 ADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSR 335 (1042)
Q Consensus 256 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 335 (1042)
.++++|++|++++|.+.+..+. .. +++|++|++++|.+.+.+|. ++.+++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~--~~------------------------l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDV--SR------------------------CVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBC--TT------------------------CTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCCCCEEECCCCCCCCCCCC--CC------------------------CCCCCEEECCCCCCCCCCCC-CCCCCCCCE
T ss_conf 3589889898978803465784--54------------------------78689898928827887711-126999998
Q ss_pred EECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 97217879998520001899989998468856577886579998469986599999988810003799863874347425
Q 001624 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415 (1042)
Q Consensus 336 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 415 (1042)
|++++|.+++..|..+..+++|++|++++|.+.+.+|.. ..++|++|++++|.+.+.+|......+++|++|++++|.+
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 979488587816577744888898989888665716724-3687898979178557725888884468688998968967
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 87687012699877689856987889888432323576775554466677988721103386889981277365622358
Q 001624 416 NGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495 (1042)
Q Consensus 416 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~ 495 (1042)
++. +|..+..+++|+.|++++|.+.+.++..
T Consensus 307 ~~~-------------------------------------------------~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 307 YGA-------------------------------------------------VPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp EEC-------------------------------------------------CCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred CCC-------------------------------------------------CCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 784-------------------------------------------------2367755877667789788525737978
Q ss_pred HHHHCCCCCEEECCCCEEEEECCCCCCCC-CCCCEEEECCCCCC-CCCC-CCC--CCCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 88713468868744751044059998886-55238981788898-7899-889--9950499878997889767457641
Q 001624 496 AIQRLRNLIRLELSYNNLTVNASGDSSFP-SQVRTLRLASCKLK-VIPN-LKS--QSKLFNLDLSDNQISGEIPNWVWEI 570 (1042)
Q Consensus 496 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~L~~~~l~-~l~~-l~~--l~~L~~L~Ls~n~i~~~~p~~~~~~ 570 (1042)
.+..+++|++|++++|.+....+..+... .+|+.|++++|.+. .++. +.. ++.|++|++++|.+.+.+|..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 87248888788484784376230989863227719986278747876766653324776189897784654248777568
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 38973199855776656778865455787408854788112348999999738966588455689988124333320454
Q 001624 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS 650 (1042)
Q Consensus 571 ~~~~L~~L~ls~n~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~~~~~L~~L~ 650 (1042)
+.|+.+++++|.+.+.+| ..+. .++.+++++
T Consensus 418 ---------------------------~~L~~L~Ls~N~l~~~~p---------------------~~l~-~l~~L~~L~ 448 (768)
T 3rgz_A 418 ---------------------------SELVSLHLSFNYLSGTIP---------------------SSLG-SLSKLRDLK 448 (768)
T ss_dssp ---------------------------TTCCEEECCSSEEESCCC---------------------GGGG-GCTTCCEEE
T ss_pred ---------------------------CCCCEEECCCCCCCCCCC---------------------HHHH-CCCCCCEEE
T ss_conf ---------------------------987989895884668546---------------------7774-499889898
Q ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 03674234553111215788679855874754467157650696527888898554546888888877759968897465
Q 001624 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLG 730 (1042)
Q Consensus 651 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 730 (1042)
+++|.+++.+|..+..+++|+.|++++|++++.+|..+..+ ++|+.|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 97881547189788287773299901995137588788169-98998975399518968768856899998989789433
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 55782352899995997889824556581111389975898117621010268877899996339944689787778745
Q 001624 731 GTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQK 810 (1042)
Q Consensus 731 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~ 810 (1042)
+.+|..+..+++|+.|++++|++++.+|.++.....+..+.+..+.-...+. ..............+ .+.+..|..
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~ 603 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK-NDGMKKECHGAGNLL---EFQGIRSEQ 603 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE-CCSCCTTCCSSEEEE---ECTTCCGGG
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCC---CCCCCCCHH
T ss_conf 7488777088989989898884688279578604212232013454211113-444322223322210---013556323
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 55222230046210024665410110134100003688751732566651134208992278122148624356688858
Q 001624 811 CITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYG 890 (1042)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~ 890 (1042)
. ..+. .....+.....++|.....+..++.++.||+|+|+++|.+|.++++++.|+.
T Consensus 604 ~-~~l~----------------------~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 604 L-NRLS----------------------TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp G-GGGG----------------------GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred H-HCCC----------------------CCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 2-0023----------------------2110011331004627433403356657978588015558778841415787
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97778854456871222879998577658714344450132777688034557700025999986664488656799899
Q 001624 891 LNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970 (1042)
Q Consensus 891 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~l 970 (1042)
|+|++|+++|.||+.+++++.|+.||||+|+++|.||..+++++.|++||+|+|+++|+||.+.||.+|...+|.|||++
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHH
T ss_conf 84868803887896784777899898978802386886775788789787968815560899601024897775698321
Q ss_pred CCCCCCCCCCC
Q ss_conf 99999999999
Q 001624 971 CGAPLNVCPPN 981 (1042)
Q Consensus 971 c~~~~~~c~~~ 981 (1042)
||.|+..|...
T Consensus 741 cg~~l~~C~~~ 751 (768)
T 3rgz_A 741 CGYPLPRCDPS 751 (768)
T ss_dssp ESTTSCCCCSC
T ss_pred CCCCCCCCCCC
T ss_conf 08877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=599.71 Aligned_cols=652 Identities=29% Similarity=0.376 Sum_probs=435.1
Q ss_pred CCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH--HHHCCCCC
Q ss_conf 9952999358768899---985436999998897889999998347541899987999438889999415--43168987
Q 001624 211 PKLRVLSLSSCYLSGP---IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPE--TILQVHTL 285 (1042)
Q Consensus 211 ~~L~~L~Ls~~~l~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L 285 (1042)
.+++.|+++++.+.+. ++..+.+++.|+.++++.+.+.. +|..++.+++|++|++++|.+.+.+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 927898778998677557669657316802246786888678-7033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCHH---CCCCCCCCEEE
Q ss_conf 899777999999899999999988589857711364487235-68999999972178799985200---01899989998
Q 001624 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSI-GNLKNLSRLDLARCNLSGSIPTS---LAKLTQLVYLD 361 (1042)
Q Consensus 286 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~ 361 (1042)
++|++++|. +.+..|..+ .++++|++|++++|.+++..+.. +.++++|++|+
T Consensus 129 ~~L~Ls~n~------------------------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 129 KFLNVSSNT------------------------LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184 (768)
T ss_dssp CEEECCSSE------------------------EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred CEEECCCCC------------------------CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEE
T ss_conf 989896882------------------------67747977856388999898979835885871556643589889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 46885657788657999846998659999998881000379986387434742587687012699877689856987889
Q 001624 362 LSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441 (1042)
Q Consensus 362 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 441 (1042)
+++|.+.+..+. ...++|++|++++|.+.+.++. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+
T Consensus 185 Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 185 ISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp CCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred CCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 978803465784-5478689898928827887711--1269999989794885878165777448888989898886657
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCC-CCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCEEEEECCCC
Q ss_conf 8884323235767755544666779887211033-868899812773656223588871346886874475104405999
Q 001624 442 PIPEFSNASYSALDTLDLSANRLEGPIPMSIFEL-KNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGD 520 (1042)
Q Consensus 442 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 520 (1042)
.++.. .+++|++|++++|.+.+.+|..+... ++|+.|++++|.+.+.++ ..+..+++|++|++++|.+..
T Consensus 262 ~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~----- 332 (768)
T 3rgz_A 262 PIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSG----- 332 (768)
T ss_dssp SCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEE-----
T ss_pred CCCCC---CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC-----
T ss_conf 16724---368789897917855772588888446868899896896778423-677558776677897885257-----
Q ss_pred CCCCCCCCEEEECCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8886552389817888987899--88999504998789978897674576413897319985577665677886545578
Q 001624 521 SSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLN 598 (1042)
Q Consensus 521 ~~~~~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~Ls~n~i~~~~p~~~~~~~~~~L~~L~ls~n~l~~l~~~~~~~~l~ 598 (1042)
.+|. +..+++|++|++++|.+.+.+|..+.....
T Consensus 333 ------------------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-------------------------- 368 (768)
T 3rgz_A 333 ------------------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-------------------------- 368 (768)
T ss_dssp ------------------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT--------------------------
T ss_pred ------------------CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHC--------------------------
T ss_conf ------------------379788724888878848478437623098986322--------------------------
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf 740885478811234899999973896658845568998812-4333320454036742345531112157886798558
Q 001624 599 LMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIG-NSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677 (1042)
Q Consensus 599 ~L~~L~l~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 677 (1042)
+|+.+++++|.+.+.+|. .+. ...+.++++++++|.+++.+|..++.+++|+.|++++
T Consensus 369 ~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILP---------------------NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp TCSEEECCSSEEEEECCT---------------------TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCCH---------------------HHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 771998627874787676---------------------66533247761898977846542487775689879898958
Q ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 74754467157650696527888898554546888888877759968897465557823528999959978898245565
Q 001624 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757 (1042)
Q Consensus 678 N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 757 (1042)
|++++.+|..+..+ ++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+
T Consensus 428 N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 428 NYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 84668546777449-98898989788154718978828777329990199513758878816998998975399518968
Q ss_pred CHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 81111389975898117621010268877899996339944689787778745552222300462100246654101101
Q 001624 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL 837 (1042)
Q Consensus 758 p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1042)
|.++..+++|+.|++++|++.|.+ |..+..+++|+.+|+++|++.|.+|..++.... +..........+........
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT-CBCCSTTCSCEEEEEECCSC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCC-HHHHHCCCCCCCCCCCCCCC
T ss_conf 768856899998989789433748--877708898998989888468827957860421-22320134542111134443
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 34100003688751732566651134208992278122148624356688858977788544568712228799985776
Q 001624 838 TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDL 917 (1042)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL 917 (1042)
............+.+........+..+..++++.|.+.|.+|..++.++.|+.||||+|+++|.+|..+++++.|+.|||
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 22223322210013556323200232110011331004627433403356657978588015558778841415787848
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 58714344450132777688034557700025999986-6644886567998
Q 001624 918 SMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQ-LQSFSPTSFEGNE 968 (1042)
Q Consensus 918 s~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~-~~~~~~~~~~gn~ 968 (1042)
|+|+++|.||..+++++.|+.||+|+|+++|.||.... +.......+.+|+
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 6880388789678477789989897880238688677578878978796881
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=481.58 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=174.5
Q ss_pred CCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 320454036742345531112157886798558747544671-5765069652788889855454688888887775996
Q 001624 645 FTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT-CLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLD 723 (1042)
Q Consensus 645 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 723 (1042)
.++.+++++|.+++..|..+..+++|+.|++++|++++.+|. .+..+ +.|+.|++++|++.+..+..|..+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCEECHHHHHCCCCCCCCH
T ss_conf 676688999977767754420778888886778757543575532575-4612784489975422764550075431011
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 8897465--55782352899995997889824556581111389975898117621010268877899996339944689
Q 001624 724 LNENQLG--GTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASN 801 (1042)
Q Consensus 724 Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n 801 (1042)
+++|.+. +..|..|..+++|+.|++++|++++..+..+.++++|+.|++++|++.+.. +.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~---------------- 522 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW--KH---------------- 522 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG--ST----------------
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC--HH----------------
T ss_conf 014644225667764555787899989999877679446345534688858899730000--00----------------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCC
Q ss_conf 78777874555222230046210024665410110134100003688751732566651134208992278122148624
Q 001624 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEK 881 (1042)
Q Consensus 802 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~ 881 (1042)
.+|.. ....+..++.++.+|+++|+++...+..
T Consensus 523 ----~~~~~-------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 523 ----ANPGG-------------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp ----TSTTS-------------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----HCCCC-------------------------------------------CCHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf ----04677-------------------------------------------4142337998888889999788779777
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 35668885897778854456871222879998577658714344450132-7776880345577000259999866644
Q 001624 882 IGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA-NLTFLSVLNLSHNNLEGNIPVSTQLQSF 959 (1042)
Q Consensus 882 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~-~L~~L~~L~ls~N~l~g~iP~~~~~~~~ 959 (1042)
|.+++.|+.|+|++|++++..+..+.++++|+.|||++|++++.+|..+. .++.|+.+++++|++.+..+....|..|
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 3466675223899997776797683789888889899996870596683011466577983189702577668999999
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=467.42 Aligned_cols=234 Identities=22% Similarity=0.205 Sum_probs=126.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEE
Q ss_conf 65278888985545468888888777599688974655578-23528999959978898245565811113899758981
Q 001624 694 ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP-KSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVL 772 (1042)
Q Consensus 694 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 772 (1042)
.|+.|++++|++++..+..|..+++|+.|++++|.+++.+| ..|.++++|+.|++++|++.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHH
T ss_conf 67668899997776775442077888888677875754357553257546127844899754227645500754310110
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECC
Q ss_conf 17621010268877899996339944689787778745552222300462100246654101101341000036887517
Q 001624 773 RSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKG 852 (1042)
Q Consensus 773 ~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1042)
++|.+.+.-..|..+..+++|+.|++++|.+.+..| ..+
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~---------------------------------------- 500 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DML---------------------------------------- 500 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-TTT----------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHH----------------------------------------
T ss_conf 146442256677645557878999899998776794-463----------------------------------------
Q ss_pred CHHHHHHHCCCCCEEECCCCCCCCCC--------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 32566651134208992278122148--------6243566888589777885445687122287999857765871434
Q 001624 853 REMELVKILSIFTSIDFSRNNFDGPI--------PEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924 (1042)
Q Consensus 853 ~~~~~~~~~~~l~~ldLs~N~l~g~i--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g 924 (1042)
..++.++.||+++|++++.. +..+.+++.|+.|+|++|+++...+..|+++++|+.|||++|++++
T Consensus 501 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 501 ------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp ------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ------CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf ------45534688858899730000000467741423379988888899997887797773466675223899997776
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 445013277768803455770002599998--66644886567998999999
Q 001624 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVST--QLQSFSPTSFEGNEGLCGAP 974 (1042)
Q Consensus 925 ~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lc~~~ 974 (1042)
..+..+.+++.|+.|++++|++++.+|... .+..+....+.|||+.|+++
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7976837898888898999968705966830114665779831897025776
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=435.87 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=148.8
Q ss_pred CCCCCCEEECCCCCCCCCCCHH-HHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 1578867985587475446715-7650696527888898554546--888888877759968897465557823528999
Q 001624 666 RAKYLLVLDLSNNKLSGKMPTC-LIKMSDILGVLNLRGNSLSGTL--SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK 742 (1042)
Q Consensus 666 ~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 742 (1042)
.+++|+.|++++|.+.+.+|.. +..+ ++|+.|++++|.+++.. +..+..+++|+.|++++|++++..|..|..+++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCC-CCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 157689888989974443462455066-7589887889966645675221056788898989899677578887347745
Q ss_pred CCEEECCCCCCCCCCCH-HHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHHHHHHHHCC
Q ss_conf 95997889824556581-111389975898117621010268877899996339944689787778-7455522223004
Q 001624 743 LEVLDLGNNKIRDTFPC-WLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRV-PQKCITSWKAMMS 820 (1042)
Q Consensus 743 L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~-p~~~~~~~~~~~~ 820 (1042)
|+.|++++|++++..+. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+.. |..
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------- 469 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKT---------- 469 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSS----------
T ss_pred CCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCCCCC----------
T ss_conf 7768788886777565212417655888989898557768--7787378878889898998885434543----------
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 62100246654101101341000036887517325666511342089922781221486243566888589777885445
Q 001624 821 DEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG 900 (1042)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 900 (1042)
..+..++.++.||+++|++++.+|..|+.++.|+.|++++|++++
T Consensus 470 -----------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 470 -----------------------------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp -----------------------------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred -----------------------------------HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf -----------------------------------124048876688799996670686463265678889898980686
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 6871222879998577658714344450132777688034557700025999
Q 001624 901 PIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPV 952 (1042)
Q Consensus 901 ~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP~ 952 (1042)
.+|+.+.+++.| .||+++|++++.+|..+..++.|+.+++++|++.|.++.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 896684756651-898768941426876625677878896779986166775
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=430.76 Aligned_cols=208 Identities=22% Similarity=0.306 Sum_probs=130.3
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 8777599688974655578235289999599788982455658-111138997589811762101026887789999633
Q 001624 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQ 794 (1042)
Q Consensus 716 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~ 794 (1042)
+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+.++++|+.|++++|++.+... ......+++|+
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~ 454 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLE 454 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-SSSSCSCTTCC
T ss_pred CCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 898232005899723-14554---55431221456753457556665127766666677871255554-33356687310
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCC
Q ss_conf 99446897877787455522223004621002466541011013410000368875173256665113420899227812
Q 001624 795 IVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874 (1042)
Q Consensus 795 ~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l 874 (1042)
.|++++|.+.+..+... ....+..++.++.|||++|++
T Consensus 455 ~L~Ls~N~l~~~~~~~~------------------------------------------~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 455 QLFLGENMLQLAWETEL------------------------------------------CWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp BCEEESCCCSSSCCSCC------------------------------------------CSSCSSCBCCEECCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCC------------------------------------------CHHHHCCCCCCCEEECCCCCC
T ss_conf 02477773644101355------------------------------------------355544755365777889856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 21486243566888589777885445687122287999857765871434445013277768803455770002599998
Q 001624 875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST 954 (1042)
Q Consensus 875 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~ 954 (1042)
++.+|..|..++.|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+. .|+.+++++|++.|.++...
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELST 567 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS
T ss_pred CCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCHH
T ss_conf 553955704501221569999978745710110--0455888988847888966837---76889931997025366189
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 66644886567998999999999-99
Q 001624 955 QLQSFSPTSFEGNEGLCGAPLNV-CP 979 (1042)
Q Consensus 955 ~~~~~~~~~~~gn~~lc~~~~~~-c~ 979 (1042)
|..+ ...++..+||.+... |.
T Consensus 568 -f~~~---~~~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 568 -FINW---LNHTNVTIAGPPADIYCV 589 (844)
T ss_dssp -HHHH---HHHTTTTTCCCGGGCCCS
T ss_pred -HHHH---HHHCCCCCCCCCCCCCCC
T ss_conf -9999---973685302660027557
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=425.21 Aligned_cols=211 Identities=25% Similarity=0.214 Sum_probs=153.7
Q ss_pred CCCCCCEEECCCCCCCCC--CCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCC
Q ss_conf 157886798558747544--671576506965278888985545468888888777599688974655578-23528999
Q 001624 666 RAKYLLVLDLSNNKLSGK--MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP-KSLANCRK 742 (1042)
Q Consensus 666 ~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~ 742 (1042)
.+++|+.|++++|++++. +|..+..+ +.|+.|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCC-CCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 4898887977587368775201221467-755486788995300-05540688888965898870587537645646213
Q ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEE-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 95997889824556581111389975898117621010-26887789999633994468978777874555222230046
Q 001624 743 LEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS-ITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSD 821 (1042)
Q Consensus 743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~ 821 (1042)
|+.|++++|++++..|..+.++++|+.|++++|.+.+. + |..+.
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~--------------------------------- 470 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFA--------------------------------- 470 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCT---------------------------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--HHHHC---------------------------------
T ss_conf 7889896897874335553477878989898983798546--77604---------------------------------
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 21002466541011013410000368875173256665113420899227812214862435668885897778854456
Q 001624 822 EDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGP 901 (1042)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 901 (1042)
.++.++.||+++|++++.+|..++.++.|+.|++++|++++.
T Consensus 471 --------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 471 --------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp --------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred --------------------------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf --------------------------------------578899898988857764865615464689898989957874
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 871222879998577658714344450132777-688034557700025999
Q 001624 902 IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLT-FLSVLNLSHNNLEGNIPV 952 (1042)
Q Consensus 902 ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~-~L~~L~ls~N~l~g~iP~ 952 (1042)
+|..++++++|+.||+++|+++ .+|..+..++ .|+.+++++|++.+..|.
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 8777068876898889898376-66876752102174887628986647764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=421.25 Aligned_cols=212 Identities=23% Similarity=0.244 Sum_probs=112.0
Q ss_pred CCCCCEEECCCCCCCCCC--CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCC
Q ss_conf 578867985587475446--7157650696527888898554546888888877759968897465557823-5289999
Q 001624 667 AKYLLVLDLSNNKLSGKM--PTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS-LANCRKL 743 (1042)
Q Consensus 667 l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L 743 (1042)
+++|+.|++++|.+.+.. +..+..+ +.|+.|++++|.+.+..+..|..+++|+.|++++|++++..+.. +..+++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred CCCCCEEECCCCCCCCCCCCCHHCCCC-CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 675898878899666456752210567-8889898989967757888734774577687888867775652124176558
Q ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEE-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 5997889824556581111389975898117621010-268877899996339944689787778745552222300462
Q 001624 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS-ITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDE 822 (1042)
Q Consensus 744 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~ 822 (1042)
+.|++++|.+++..|.++..+++|+.|++++|++.+. +..+..+..+++|+.|++++|.+.+..|...
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------- 496 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF----------- 496 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-----------
T ss_pred CEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH-----------
T ss_conf 889898985577687787378878889898998885434543124048876688799996670686463-----------
Q ss_pred CCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 10024665410110134100003688751732566651134208992278122148624356688858977788544568
Q 001624 823 DEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPI 902 (1042)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 902 (1042)
..++.++.||+++|++++.+|..+..++.| .|++++|++++.+
T Consensus 497 ------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 497 ------------------------------------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp ------------------------------------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred ------------------------------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCC
T ss_conf ------------------------------------265678889898980686896684756651-8987689414268
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 7122287999857765871434445
Q 001624 903 PSTIGNLQQLESLDLSMNHLSDQIP 927 (1042)
Q Consensus 903 p~~l~~l~~L~~LdLs~N~l~g~ip 927 (1042)
|+.++.+++|+.||+++|.+++..+
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7662567787889677998616677
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=415.66 Aligned_cols=60 Identities=28% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCC
Q ss_conf 7778822188888999888975689999989979898888877-332223798809937798
Q 001624 101 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQI-PIQVSAMTRLVTLDLSSS 161 (1042)
Q Consensus 101 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l-p~~l~~l~~L~~L~L~~n 161 (1042)
.+++++|||++|.+.+. .|..+.++++|++|++++|...+.+ |..++++++|++|++++|
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCEEECCCCCCCCC-CHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 99868888877867832-96677662137088678997744419778537877888879899
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=414.80 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=54.9
Q ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 31112157886798558747544671576506965278888985545468-88888877759968897465557823528
Q 001624 661 PETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS-VTFPGNCGLQTLDLNENQLGGTVPKSLAN 739 (1042)
Q Consensus 661 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 739 (1042)
+..+..+++|+.|++++|.+. .+|..+..+ ++|+.|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEE-EECCCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred HHHHCCCCCCCEEECCCCCCC-CCHHHCCCC-CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 122146775548678899530-005540688-888965898870587537645646213788989689787433555347
Q ss_pred CCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEEECCCEEEEE
Q ss_conf 9999599788982455-6581111389975898117621010
Q 001624 740 CRKLEVLDLGNNKIRD-TFPCWLKNISSLRVLVLRSNSFYGS 780 (1042)
Q Consensus 740 l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~ 780 (1042)
+++|+.|++++|++++ ..|..+..+++|+.|++++|.+.+.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 787898989898379854677604578899898988857764
Done!