Query 001625
Match_columns 1042
No_of_seqs 614 out of 3307
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1873 Ubiquitin-specific pro 100.0 2.7E-85 5.9E-90 750.8 24.5 772 42-1042 36-877 (877)
2 cd02669 Peptidase_C19M A subfa 100.0 4.4E-67 9.5E-72 615.4 37.0 239 105-388 26-287 (440)
3 KOG0944 Ubiquitin-specific pro 100.0 2.1E-61 4.6E-66 550.2 22.6 267 70-388 178-465 (763)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 5.3E-57 1.2E-61 511.8 21.6 151 227-386 106-262 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 2.6E-55 5.6E-60 492.7 27.5 142 231-387 1-144 (300)
6 COG5207 UBP14 Isopeptidase T [ 100.0 1.5E-55 3.4E-60 485.8 20.7 293 42-386 147-454 (749)
7 cd02660 Peptidase_C19D A subfa 100.0 1.7E-53 3.7E-58 483.4 30.9 151 230-388 1-159 (328)
8 cd02667 Peptidase_C19K A subfa 100.0 5.5E-54 1.2E-58 477.1 25.0 127 914-1040 140-279 (279)
9 cd02668 Peptidase_C19L A subfa 100.0 2.4E-53 5.3E-58 481.8 29.2 138 231-387 1-153 (324)
10 cd02664 Peptidase_C19H A subfa 100.0 5.1E-53 1.1E-57 479.5 26.5 129 231-387 1-134 (327)
11 cd02671 Peptidase_C19O A subfa 100.0 2.3E-52 5.1E-57 473.3 28.8 138 224-388 19-159 (332)
12 COG5560 UBP12 Ubiquitin C-term 100.0 2.3E-53 5E-58 479.9 13.5 163 227-391 263-453 (823)
13 cd02657 Peptidase_C19A A subfa 100.0 7.6E-51 1.7E-55 457.3 27.8 141 231-388 1-155 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 1.7E-50 3.8E-55 455.7 29.0 142 231-388 1-162 (311)
15 cd02659 peptidase_C19C A subfa 100.0 1.9E-50 4.2E-55 459.6 28.5 143 228-387 1-148 (334)
16 cd02661 Peptidase_C19E A subfa 100.0 5E-50 1.1E-54 449.0 27.7 153 229-387 1-159 (304)
17 cd02662 Peptidase_C19F A subfa 100.0 2.5E-45 5.5E-50 398.9 22.9 110 918-1040 121-240 (240)
18 COG5533 UBP5 Ubiquitin C-termi 100.0 6E-46 1.3E-50 390.7 17.2 160 226-387 68-259 (415)
19 KOG1867 Ubiquitin-specific pro 100.0 1.2E-44 2.6E-49 423.3 21.8 253 110-389 60-323 (492)
20 KOG1868 Ubiquitin C-terminal h 100.0 3.8E-44 8.3E-49 425.3 14.2 164 224-388 296-489 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 1.7E-41 3.7E-46 365.5 21.0 116 912-1040 114-230 (230)
22 KOG1866 Ubiquitin carboxyl-ter 100.0 1.8E-42 3.8E-47 397.0 4.4 146 224-386 90-243 (944)
23 KOG1870 Ubiquitin C-terminal h 100.0 3.7E-40 8E-45 410.8 20.3 170 224-395 241-435 (842)
24 COG5077 Ubiquitin carboxyl-ter 100.0 8.5E-41 1.9E-45 382.9 7.3 146 221-386 185-334 (1089)
25 cd02673 Peptidase_C19Q A subfa 100.0 7.5E-39 1.6E-43 347.8 20.8 105 914-1040 137-245 (245)
26 cd02665 Peptidase_C19I A subfa 100.0 8.3E-39 1.8E-43 341.7 18.0 100 916-1040 121-228 (228)
27 cd02666 Peptidase_C19J A subfa 100.0 1.1E-38 2.4E-43 361.5 17.0 148 229-388 1-177 (343)
28 PF00443 UCH: Ubiquitin carbox 100.0 3.1E-36 6.7E-41 328.1 20.2 112 917-1039 152-269 (269)
29 cd02257 Peptidase_C19 Peptidas 100.0 6.5E-35 1.4E-39 313.0 22.3 118 912-1040 128-255 (255)
30 KOG2026 Spindle pole body prot 100.0 1.2E-34 2.7E-39 313.9 19.0 240 105-388 39-287 (442)
31 KOG4598 Putative ubiquitin-spe 100.0 4.1E-36 8.9E-41 340.4 3.8 122 225-386 83-204 (1203)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 4.2E-33 9.1E-38 355.6 12.0 141 227-386 167-314 (1093)
33 cd02672 Peptidase_C19P A subfa 100.0 4.1E-31 8.9E-36 291.0 23.5 117 909-1040 141-268 (268)
34 KOG1864 Ubiquitin-specific pro 100.0 8.6E-30 1.9E-34 302.8 15.0 161 227-387 230-416 (587)
35 PF13423 UCH_1: Ubiquitin carb 99.9 8.4E-27 1.8E-31 261.4 23.6 152 230-385 1-155 (295)
36 cd02670 Peptidase_C19N A subfa 99.9 8.3E-26 1.8E-30 243.8 12.3 193 807-1040 22-241 (241)
37 KOG1871 Ubiquitin-specific pro 99.9 2E-25 4.3E-30 244.0 15.0 120 912-1042 291-419 (420)
38 KOG1872 Ubiquitin-specific pro 99.9 1.5E-24 3.3E-29 243.1 2.0 126 228-368 104-244 (473)
39 PF02148 zf-UBP: Zn-finger in 99.5 2.2E-14 4.7E-19 123.3 3.1 54 105-164 9-62 (63)
40 KOG1275 PAB-dependent poly(A) 99.3 2.6E-12 5.6E-17 152.9 8.1 224 808-1039 609-860 (1118)
41 KOG0804 Cytoplasmic Zn-finger 98.9 4.3E-10 9.3E-15 126.0 2.2 52 105-162 238-289 (493)
42 smart00290 ZnF_UBP Ubiquitin C 98.7 1.6E-08 3.5E-13 82.8 3.4 40 105-149 9-48 (50)
43 cd02663 Peptidase_C19G A subfa 97.1 0.00055 1.2E-08 77.4 4.8 210 806-1040 63-300 (300)
44 cd02671 Peptidase_C19O A subfa 96.9 0.001 2.3E-08 76.3 4.9 205 805-1040 102-332 (332)
45 KOG1275 PAB-dependent poly(A) 96.8 0.0022 4.7E-08 78.6 6.6 159 228-389 498-674 (1118)
46 COG5207 UBP14 Isopeptidase T [ 96.5 0.0014 2.9E-08 75.6 2.8 221 801-1042 387-749 (749)
47 KOG1864 Ubiquitin-specific pro 96.5 0.0022 4.8E-08 78.1 4.6 204 807-1041 321-571 (587)
48 cd02667 Peptidase_C19K A subfa 96.4 0.0035 7.6E-08 70.1 5.1 55 807-871 50-104 (279)
49 cd02668 Peptidase_C19L A subfa 96.4 0.0033 7.2E-08 71.8 4.8 212 806-1040 86-324 (324)
50 cd02657 Peptidase_C19A A subfa 96.3 0.0038 8.2E-08 70.5 4.6 207 804-1040 86-305 (305)
51 cd02673 Peptidase_C19Q A subfa 96.3 0.0033 7.1E-08 69.1 3.9 66 805-872 30-106 (245)
52 cd02664 Peptidase_C19H A subfa 96.2 0.0035 7.5E-08 71.9 3.8 213 807-1040 80-327 (327)
53 cd02658 Peptidase_C19B A subfa 96.1 0.0053 1.1E-07 69.6 4.3 211 806-1040 98-311 (311)
54 cd02670 Peptidase_C19N A subfa 96.0 0.005 1.1E-07 67.3 3.7 39 231-327 1-40 (241)
55 cd02665 Peptidase_C19I A subfa 96.0 0.0045 9.8E-08 67.1 3.2 61 807-871 21-90 (228)
56 PF15499 Peptidase_C98: Ubiqui 95.9 0.023 4.9E-07 61.3 7.7 82 904-1021 172-253 (275)
57 cd02662 Peptidase_C19F A subfa 95.7 0.0077 1.7E-07 65.9 3.6 56 807-872 33-89 (240)
58 cd02669 Peptidase_C19M A subfa 95.7 0.01 2.3E-07 70.8 4.7 218 805-1040 204-440 (440)
59 cd02660 Peptidase_C19D A subfa 95.6 0.0092 2E-07 68.1 3.8 222 805-1040 85-328 (328)
60 KOG1865 Ubiquitin carboxyl-ter 95.5 0.0062 1.3E-07 71.9 2.1 203 805-1041 190-409 (545)
61 cd02659 peptidase_C19C A subfa 95.4 0.016 3.5E-07 66.3 4.9 217 805-1042 83-332 (334)
62 cd02666 Peptidase_C19J A subfa 95.3 0.014 3.1E-07 67.3 4.1 200 807-1040 97-343 (343)
63 cd02661 Peptidase_C19E A subfa 95.1 0.023 5.1E-07 63.7 4.8 206 807-1039 85-303 (304)
64 cd02674 Peptidase_C19R A subfa 94.7 0.02 4.3E-07 61.7 2.9 57 807-873 21-77 (230)
65 KOG0944 Ubiquitin-specific pro 94.7 0.011 2.5E-07 70.6 1.0 148 805-964 401-550 (763)
66 COG5533 UBP5 Ubiquitin C-termi 94.6 0.0065 1.4E-07 66.5 -1.3 207 807-1042 161-414 (415)
67 cd02257 Peptidase_C19 Peptidas 91.5 0.12 2.5E-06 55.1 2.6 65 807-871 21-94 (255)
68 COG5560 UBP12 Ubiquitin C-term 88.4 0.14 3.1E-06 61.2 0.2 128 901-1042 694-822 (823)
69 KOG1866 Ubiquitin carboxyl-ter 84.2 0.15 3.3E-06 61.9 -2.6 217 807-1042 181-434 (944)
70 KOG1868 Ubiquitin C-terminal h 81.7 0.51 1.1E-05 58.4 0.4 226 793-1042 375-646 (653)
71 PF05408 Peptidase_C28: Foot-a 80.0 0.94 2E-05 46.8 1.6 23 228-250 32-54 (193)
72 KOG1873 Ubiquitin-specific pro 75.3 0.72 1.6E-05 56.5 -0.9 64 806-871 304-367 (877)
73 PF09416 UPF1_Zn_bind: RNA hel 73.7 2.3 4.9E-05 43.1 2.3 53 105-159 12-68 (152)
74 KOG1867 Ubiquitin-specific pro 69.5 3.7 8E-05 49.7 3.3 217 806-1041 246-483 (492)
75 KOG4598 Putative ubiquitin-spe 67.7 0.81 1.8E-05 55.3 -2.6 210 805-1042 140-441 (1203)
76 PF08715 Viral_protease: Papai 66.8 6.6 0.00014 44.9 4.4 77 228-325 101-178 (320)
77 KOG1863 Ubiquitin carboxyl-ter 63.3 3.5 7.5E-05 54.9 1.5 216 805-1042 250-485 (1093)
78 PF00443 UCH: Ubiquitin carbox 62.1 4 8.7E-05 44.0 1.5 47 807-853 92-150 (269)
79 PF15499 Peptidase_C98: Ubiqui 54.2 30 0.00066 38.1 6.4 42 232-273 5-46 (275)
80 KOG1872 Ubiquitin-specific pro 45.2 11 0.00024 44.5 1.6 211 804-1040 193-467 (473)
81 KOG2463 Predicted RNA-binding 40.8 33 0.00071 38.9 4.2 56 887-943 242-298 (376)
82 PF05408 Peptidase_C28: Foot-a 40.3 36 0.00079 35.6 4.2 33 981-1026 130-164 (193)
83 PF13423 UCH_1: Ubiquitin carb 34.3 25 0.00054 39.6 2.2 194 808-1021 82-295 (295)
84 COG5077 Ubiquitin carboxyl-ter 32.7 6.7 0.00014 48.6 -2.8 209 806-1041 271-510 (1089)
85 PRK14890 putative Zn-ribbon RN 32.3 20 0.00044 30.5 0.8 13 105-117 46-58 (59)
86 COG2888 Predicted Zn-ribbon RN 29.2 23 0.00051 30.1 0.6 13 105-117 48-60 (61)
87 COG1997 RPL43A Ribosomal prote 28.3 41 0.00089 30.9 2.1 32 71-120 35-66 (89)
88 COG1773 Rubredoxin [Energy pro 27.8 40 0.00087 28.4 1.7 42 71-115 3-44 (55)
89 cd00729 rubredoxin_SM Rubredox 25.9 36 0.00078 25.7 1.1 14 107-120 2-15 (34)
90 cd00730 rubredoxin Rubredoxin; 25.5 46 0.001 27.5 1.7 41 72-115 2-42 (50)
91 PF08770 SoxZ: Sulphur oxidati 20.5 3.2E+02 0.0069 25.9 6.6 54 970-1041 12-75 (100)
No 1
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-85 Score=750.77 Aligned_cols=772 Identities=37% Similarity=0.546 Sum_probs=486.7
Q ss_pred cCCCCCCC-CCCccCCCChhhhhcccCCCCCCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCCcccCC
Q 001625 42 PVMKERKP-CPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGG 120 (1042)
Q Consensus 42 ~~~~~~~~-CpHl~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~~~Cgr 120 (1042)
.++++... |.|+.|++++..+++.|++..+..|.+|...+..++|+ .. ..-.....||+||.||+++|||
T Consensus 36 ~t~t~~~~~C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~----s~-----~~~~~~~~iWLCLkCG~q~CG~ 106 (877)
T KOG1873|consen 36 KTPTETPVECQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGG----SS-----DQFEFDNAIWLCLKCGYQGCGR 106 (877)
T ss_pred cCCCCCccccchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCC----Cc-----cccccccceeeecccCCeeeCC
Confidence 33334444 99999999999999999999889999999875544431 00 0111127899999999999999
Q ss_pred CCCCCCCCcccccccccC---CCcEEEeccCCCeEEEcCCCC-ccccccccccccchhhHHHHHHHhccccccccccccc
Q 001625 121 VGLPTTPQSHVVRHARQT---RHPLVIQWENPHLRWCFPCNT-LIPVEKTEENGENKDALSEVVKLIKGRSTEISSVDVE 196 (1042)
Q Consensus 121 ~~~~~~~~~Ha~~H~~~~---~H~v~~~l~~~~~v~Cy~Cd~-~v~~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~~~e 196 (1042)
. +...||+.||+.. .|+|+|++.+ +.+|||.||. .+...+. ..+.+.++++...-...++....
T Consensus 107 ~----~~~~halkH~~~~r~~~Hclvin~~n-~~~WCy~Cd~kl~~~~~k-------n~l~e~vd~l~k~a~~~~~~~sp 174 (877)
T KOG1873|consen 107 N----SESQHALKHFLTPRSEPHCLVINLIN-WLIWCYSCDAKLVPFDKK-------NLLGEKVDLLIKVASKTSLTRSP 174 (877)
T ss_pred C----cccchhhhhhcccCCCCeeEEEEeee-eeeEEEeccchhccccch-------hHHHHHHHHHHHHHhccccccCC
Confidence 5 4689999999875 6999999998 8899999999 5554432 12333333332221110100000
Q ss_pred ccccCCCCcccccccccccccCCCCCCCCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC------------
Q 001625 197 DAWFGSGNVNSEIKSESTVVSGSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT------------ 264 (1042)
Q Consensus 197 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~------------ 264 (1042)
.+.. .+...|..+.+.-...-.+..+.++.++||.|||||||+|||||+|+.+|.||+.|.....+
T Consensus 175 n~~~--~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s 252 (877)
T KOG1873|consen 175 NTLK--ISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDS 252 (877)
T ss_pred Cccc--chhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCcccc
Confidence 0000 00000111111101112245667788999999999999999999999999999999864332
Q ss_pred -----------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 001625 265 -----------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRK 333 (1042)
Q Consensus 265 -----------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k 333 (1042)
.++++.+|..| .+|... .+..|+|+.|+..++...|+|++|+||||||+|++|||.|..|+.+.++
T Consensus 253 ~l~~L~~el~~~g~lt~al~~~-~e~~e~--~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~k 329 (877)
T KOG1873|consen 253 SLSPLFSELSSPGPLTYALANL-LEMSET--TKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRK 329 (877)
T ss_pred chhhHHHhccCCcchhHHHHhh-hhhhhc--cCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHH
Confidence 24666666663 333332 3789999999999999999999999999999999999999999877665
Q ss_pred CCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecCCCCCCCCCCchhhhhhcccCCCCCCC
Q 001625 334 RNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSG 413 (1042)
Q Consensus 334 ~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1042)
+. |...|+|...+.+.|+.|++.+..+++|.+++|++|.........++..++...- ...
T Consensus 330 k~----------------Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~vs--s~~-- 389 (877)
T KOG1873|consen 330 KN----------------ILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACDVS--SVH-- 389 (877)
T ss_pred Hh----------------HHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhcccee--ccc--
Confidence 42 6678999999999999999999999999999999997776666555554443310 000
Q ss_pred ccccccccccccccccccc----------------cccccccccccccccCCCccccccCCCCCccccccCCCccccccC
Q 001625 414 RIRAKGTKDTHAVTTQSIS----------------NLSISSKSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCG 477 (1042)
Q Consensus 414 ~~~~k~~~~~~~~p~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 477 (1042)
...-......+|.++.+ +.+++..++.+.+....+..++.+++ ++...+ -.++...+..
T Consensus 390 --~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~~t~dn-~~~~k~--qS~~~~~~S~ 464 (877)
T KOG1873|consen 390 --ESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDSLTDDN-DQVFKG--QSDVAGTNSK 464 (877)
T ss_pred --hhhcccccccccCccccccCCCcccceeccccccCCccccCcccCcccccccccccccC-chhhcc--ccccccCccc
Confidence 00001111222222111 11122222222221111111111111 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccccccccCCCCcCcccccccccCccccccccccccccccCCCCccccccc
Q 001625 478 SALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHG 557 (1042)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1042)
+ .++ ....+..+.-+..-....+.. ...-|.+ ...-.+.+.+.+-.-++-.
T Consensus 465 ~-~~~------~~k~~a~s~n~n~~~~g~~~~--------~a~~v~~--------------~~~~~~p~gD~e~s~Ad~~ 515 (877)
T KOG1873|consen 465 E-DQN------KAKNQAKSQNLNEASQGKDNE--------KALQVND--------------RQLDILPLGDGELSKADMS 515 (877)
T ss_pred c-ccc------hhhhhhhhhccccccccccch--------hhhhhch--------------hhccccccCcccccccccc
Confidence 0 000 000000000000000001000 0000000 0011223322111000011
Q ss_pred cccccccccccccCCCCcccccc-cccc-ccCCCcCC---CCCCCcCCCCCCCCCCCCc-ccccccceeeccC----ccc
Q 001625 558 LTLENNDVLFVQDSGEQDEVSDD-SLIN-SNQIPLLD---SKPNLKADSSSGDAGEDEL-PLVVQDSEVILLP----YNE 627 (1042)
Q Consensus 558 ~~~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p----~~~ 627 (1042)
++..++......-.+-.++.-.. .+.+ +......+ ..+.....+.+.++|+.+- +..+..+.....| ++.
T Consensus 516 lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~ 595 (877)
T KOG1873|consen 516 LDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKI 595 (877)
T ss_pred cccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceee
Confidence 11111111111101111111110 0111 11112221 2233344555666665555 5555566777778 787
Q ss_pred ccccccccc-cCCcccccccccCCCc-cc-cccCCCC-CCCCCccccCCCCCCCCCccccCCcceeccCCCCCCCCCCCC
Q 001625 628 EISTTAEKI-SGEGEASSSVVGCRQE-EV-DFDGFGD-LFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDS 703 (1042)
Q Consensus 628 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-d~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~~d~~~~~ 703 (1042)
-..+..++. .|.++.|+++.-++.+ .+ |++.|+. +|+++.....++++|.+....++.+|. +.+|..++.+-+++
T Consensus 596 vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~-a~~S~s~~~~~~~~ 674 (877)
T KOG1873|consen 596 VSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFD-AFSSISDPEVLDSS 674 (877)
T ss_pred eccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCcc-ccccccChhhccCC
Confidence 777777775 6788889999988888 55 9999996 999999999999999999999999997 78899999999999
Q ss_pred CCCcCHHHHHhhhccccccCCCCcccCccchhHHHHHHHHHHHHhhhhcCCcccCCCCCCCCccccCCccccccccccCC
Q 001625 704 DSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDVDSLCNGD 783 (1042)
Q Consensus 704 ~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 783 (1042)
+.++||++||..|++-|+|+|+|+|.||||++.+..++ .++++ .++
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~-r~k~~---------~n~------------------------ 720 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQR-REKRG---------LNE------------------------ 720 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccc-hhhcc---------CCC------------------------
Confidence 99999999999999999999999999999999665543 11110 011
Q ss_pred CCCCCCccccccccccccCCCCCCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccc
Q 001625 784 AKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDE 863 (1042)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~ 863 (1042)
|+.-..|+++
T Consensus 721 ---~~sk~s~~es------------------------------------------------------------------- 730 (877)
T KOG1873|consen 721 ---DNSKYSFNES------------------------------------------------------------------- 730 (877)
T ss_pred ---Ccccccccch-------------------------------------------------------------------
Confidence 0000000000
Q ss_pred eeeeccCCCCCCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccc
Q 001625 864 GSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLS 943 (1042)
Q Consensus 864 l~~~l~~~~~~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~ 943 (1042)
++ +..-|+|++.|..+||||+||||||..+..|+..
T Consensus 731 --------------------------------------~~------~~t~akk~~li~~aPpVltihlKrf~q~~~~~~~ 766 (877)
T KOG1873|consen 731 --------------------------------------EY------RNTYAKKKVLINKAPPVLTIHLKRFFQDIRGRLS 766 (877)
T ss_pred --------------------------------------hh------hhhhhheeeecccCCceeeehHhhhhhhhhchhh
Confidence 00 1133889999999999999999999999888899
Q ss_pred cccceeecccccccCCCCCCCCCC---CCCcceEEEEEEEEeCccCCCeEEEEEECCCCCc-------cc--cccccCCC
Q 001625 944 KLNGHVNFSEIINLRPYMDPGCTD---HDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNK-------VK--AKKESVGG 1011 (1042)
Q Consensus 944 Ki~~~V~fP~~LdL~~~~~~~~~~---~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~-------~~--~~~~~~~~ 1011 (1042)
|++.+|.|++.+||.+||...... .....|+|+|||.|.|++.+||||+|+|...... .. .+.....+
T Consensus 767 k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~ 846 (877)
T KOG1873|consen 767 KLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSG 846 (877)
T ss_pred cccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCc
Confidence 999999999999999998655443 2445899999999999999999999999765421 01 12225689
Q ss_pred eEEEEcCceeeeechhhhcCCCcEEEEEEEC
Q 001625 1012 VWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 1012 ~W~~fnD~~V~~vs~~ev~~~~aYiLfYeRi 1042 (1042)
+||++.|.+|+++++++|+..+|||||||||
T Consensus 847 ~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 847 RWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ceEEecchheecccHHHHhhhhhhhhheecC
Confidence 9999999999999999999999999999998
No 2
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.4e-67 Score=615.44 Aligned_cols=239 Identities=21% Similarity=0.332 Sum_probs=195.8
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCCCeEEEcCCCCccccccccccccchhhHHHHHHHhc
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIK 184 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~~~v~Cy~Cd~~v~~~~l~~~~~~~~~l~~~i~~~~ 184 (1042)
.|+|+||+||+++|||. .++||+.|+.+++|+++|++.+ ..+|||+|+++|+++.+ .++...+.
T Consensus 26 ~n~~~CL~cg~~~~g~~-----~~~ha~~H~~~~~H~~~v~l~t-~~~yc~~~~~~v~d~~l----------~~i~~~~~ 89 (440)
T cd02669 26 LNVYACLVCGKYFQGRG-----KGSHAYTHSLEDNHHVFLNLET-LKFYCLPDNYEIIDSSL----------DDIKYVLN 89 (440)
T ss_pred CcEEEEcccCCeecCCC-----CCcHHHHHhhccCCCEEEECCC-CCEEEeCCCCEEeCccH----------HHHHHHhc
Confidence 78999999999999874 7899999999999999999998 56799999999998775 55667777
Q ss_pred ccccccccccccccccCCCCcccccccccccccCCCCC-CCCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC
Q 001625 185 GRSTEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLD-GNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL 263 (1042)
Q Consensus 185 ~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~ 263 (1042)
++++++.+..++.. ..+. ..+. ....+|++||.|+|||||||||||+|+|+|+||++|+....
T Consensus 90 ~~~~~~~i~~~~~~--------------~~~~--~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~ 153 (440)
T cd02669 90 PTYTKEQISDLDRD--------------PKLS--RDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYEN 153 (440)
T ss_pred CCCCHHHHHHhhhc--------------cccc--cccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccc
Confidence 77776554433321 0000 1111 23457899999999999999999999999999999997643
Q ss_pred C------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcC-CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCC
Q 001625 264 T------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKA-PQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNS 336 (1042)
Q Consensus 264 ~------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~-~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~ 336 (1042)
. ..++..+|..+++.+|+...++..++|..|+.+++... +.|.+++||||||||++|||.||+++....
T Consensus 154 ~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---- 229 (440)
T cd02669 154 YENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---- 229 (440)
T ss_pred cccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC----
Confidence 2 36899999999999998776678999999999998764 679999999999999999999999875321
Q ss_pred CCCCCCCCCCCcccccccceEEEEEEEEEeCCCC---------------CEEEEEeeeeeEEeecCC
Q 001625 337 PSEGNGISSNQGPVFVDYVFGGQIASTVRCVECG---------------HSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 337 ~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~---------------~~S~~~EpF~dLSL~Ip~ 388 (1042)
....++|+++|+|++.++++|..|. ..+.+.+||++|||+||.
T Consensus 230 ---------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~ 287 (440)
T cd02669 230 ---------KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPP 287 (440)
T ss_pred ---------CCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCC
Confidence 1245899999999999999987654 357789999999999975
No 3
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-61 Score=550.25 Aligned_cols=267 Identities=27% Similarity=0.423 Sum_probs=222.6
Q ss_pred CCCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCCcccCCCCCCC-CCCcccccccccCCCcEEEecc-
Q 001625 70 DPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGGVGLPT-TPQSHVVRHARQTRHPLVIQWE- 147 (1042)
Q Consensus 70 ~~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~~~Cgr~~~~~-~~~~Ha~~H~~~~~H~v~~~l~- 147 (1042)
..|+|+.|... .|||+||+||.++|||.|.+. ++|+||..||..++|||+|.|.
T Consensus 178 ~gwkCs~CDL~------------------------~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgs 233 (763)
T KOG0944|consen 178 SGWKCSKCDLT------------------------ENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGS 233 (763)
T ss_pred CcceecccCcc------------------------cceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecc
Confidence 34899999986 899999999999999998544 5599999999999999999996
Q ss_pred ---CCCeEEEcCCCCccccccccccccchhhHHHHHHHhcccccccccccccccccCCCCcccccccccccccCCCCCCC
Q 001625 148 ---NPHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIKGRSTEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLDGN 224 (1042)
Q Consensus 148 ---~~~~v~Cy~Cd~~v~~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 224 (1042)
+..+||||.||+.|.++++ ++|+.+++|++.+..++++++.+++-.. +..+|+. ....++..+.+.
T Consensus 234 Is~dg~DvycY~cDd~v~dPnl-----~~hl~hfGId~~~m~kteksl~elel~~----N~i~Ew~--~~~esg~~l~p~ 302 (763)
T KOG0944|consen 234 ISPDGADVYCYDCDDEVRDPNL-----ESHLSHFGIDMAKMDKTEKSLVELELDQ----NRIWEWE--ALEESGAPLEPL 302 (763)
T ss_pred cCCCccceeeecccccccCccH-----HHHHHhcCccHHHhccchhHHHHHHHHh----hcccCce--eeccCCCccccc
Confidence 3578999999999999988 5789999999999999998887765311 1112211 112234556678
Q ss_pred CCccccccccCCCcchhHHHHHHHhcCHHHHHHHhccc--------CCCChHHHHHHHHHHHhCCCCCCC--------cc
Q 001625 225 ACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAE--------LTFGPLTIALKKLFAETKPETGLR--------NV 288 (1042)
Q Consensus 225 ~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~--------~~~~~l~~~L~~Lf~~l~~~~~~~--------~~ 288 (1042)
.++|++||+|+||+||||||||+|+++|.|..+++... .+...+.++|.+|...|.+..... ..
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 89999999999999999999999999999998887652 233689999999999998765433 48
Q ss_pred cCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCC
Q 001625 289 INPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVE 368 (1042)
Q Consensus 289 isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~ 368 (1042)
|+|..|+..+++.+|.|...+||||+|||++||+.|++..... ..-+.++|.+.+..++.|..
T Consensus 383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-----------------~~nptd~frF~ve~Rv~C~~ 445 (763)
T KOG0944|consen 383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-----------------LPNPTDLFRFEVEDRVSCLG 445 (763)
T ss_pred cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-----------------CCCHHHHHHhhhhhhhhhhc
Confidence 9999999999999999999999999999999999997643210 03367899999999999999
Q ss_pred CCCEEEEEeeeeeEEeecCC
Q 001625 369 CGHSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 369 C~~~S~~~EpF~dLSL~Ip~ 388 (1042)
|+++++++++-+.|.||||.
T Consensus 446 c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 446 CRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred cccccccchhheeeEeeccc
Confidence 99999999999999999964
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-57 Score=511.83 Aligned_cols=151 Identities=30% Similarity=0.487 Sum_probs=131.8
Q ss_pred ccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCCC------ChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhh
Q 001625 227 YVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTF------GPLTIALKKLFAETKPETGLRNVINPRSFFGCICS 300 (1042)
Q Consensus 227 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~------~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~ 300 (1042)
...+||.|+|||||+|||||||.++|+|.+||+...+.. -+++++|+..+....... ..+|+|..|+..|..
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~--g~pisP~~i~s~L~~ 183 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNP--GHPISPSQILSNLRN 183 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCC--CCccChHHHHHhhhh
Confidence 356799999999999999999999999999999866543 578899999887776554 359999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeee
Q 001625 301 KAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFL 380 (1042)
Q Consensus 301 ~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~ 380 (1042)
+...|..+.|.||||||++++|.|+.-..... .......+..++|+++|+|.|+++|+|..|+++|.++|+.+
T Consensus 184 I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~-------~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~ 256 (545)
T KOG1865|consen 184 ISAHFGRGRQEDAHEFLRFTVDAMQKACLPGH-------KQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYL 256 (545)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHhhcCCC-------ccCCcccccceehhhhhccchhhceecccCCCccccccccc
Confidence 99999999999999999999999988775211 12334557789999999999999999999999999999999
Q ss_pred eEEeec
Q 001625 381 DLSLPV 386 (1042)
Q Consensus 381 dLSL~I 386 (1042)
||+|.|
T Consensus 257 dltvei 262 (545)
T KOG1865|consen 257 DLTLEI 262 (545)
T ss_pred ceEEEe
Confidence 999998
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-55 Score=492.71 Aligned_cols=142 Identities=34% Similarity=0.560 Sum_probs=120.8
Q ss_pred ccccCCCcchhHHHHHHHhcCHHHHHHHhcccCCCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCCCCCC
Q 001625 231 GLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQQ 310 (1042)
Q Consensus 231 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~~~~Q 310 (1042)
||.|+|||||||||||+|+| .+++.+|+.||..|+........++|..|+.+++...+.|.+++|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~Q 65 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMH 65 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCcc
Confidence 89999999999999999998 567889999999999876556789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCCC--CCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecC
Q 001625 311 HDSHELLRCLLDGLCSEELAFRKRNSPS--EGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVP 387 (1042)
Q Consensus 311 QDAhEFL~~LLd~L~~e~~~~~k~~~~~--~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip 387 (1042)
|||||||++|||.||+++....+..... ...........++|.++|+|++.++++|..|++.+.+.|+|++|+|+||
T Consensus 66 qDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~ 144 (300)
T cd02663 66 QDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVE 144 (300)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCC
Confidence 9999999999999999987654322110 0111122345688999999999999999999999999999999999985
No 6
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-55 Score=485.81 Aligned_cols=293 Identities=25% Similarity=0.423 Sum_probs=219.1
Q ss_pred cCCCCCCCCCCccCCCChhhhhcccCCCCCCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCCcccCCC
Q 001625 42 PVMKERKPCPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGGV 121 (1042)
Q Consensus 42 ~~~~~~~~CpHl~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~~~Cgr~ 121 (1042)
.-..+..+|+|.-.. ..-..-..+-+...|+.|... .|||+||+||.++|||.
T Consensus 147 ~w~~E~~tC~H~~n~---~~~s~~~~ni~~~~Cs~CDl~------------------------~nLW~Cl~CG~vgCGR~ 199 (749)
T COG5207 147 LWRDEEVTCVHGCNE---GPSSIEMGNIGGLKCSLCDLK------------------------TNLWVCLSCGYVGCGRM 199 (749)
T ss_pred hhhhhcccccccCCC---CCCcccccccCCceeccccch------------------------hceEEEEecCcccccce
Confidence 334455799997742 222222333345779999986 89999999999999999
Q ss_pred CCCCCCCcccccccccCCCcEEEeccC----CCeEEEcCCCCccccccccccccchhhHHHHHHHhcccccccccccccc
Q 001625 122 GLPTTPQSHVVRHARQTRHPLVIQWEN----PHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIKGRSTEISSVDVED 197 (1042)
Q Consensus 122 ~~~~~~~~Ha~~H~~~~~H~v~~~l~~----~~~v~Cy~Cd~~v~~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~~~e~ 197 (1042)
|+|..+++||+.||..++||++|.+.+ .+++|||.||+++..+.. .....+++.+++++.+...++++++.+.-
T Consensus 200 QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~R~~~n--~n~~s~~~~fGinIa~~~~~Eksl~~lq~ 277 (749)
T COG5207 200 QYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEIRSRYN--SNENSVTIDFGINIADGKTEEKSLRKLQS 277 (749)
T ss_pred eecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCcccccCCc--ccccceeeeeccchhhccchHHHHHHHHH
Confidence 999999999999999999999999952 367899999999765431 12355777888888888877777655431
Q ss_pred cccCCCCcccccccccccccCCCCCCCCCcc-ccccccCCCcchhHHHHHHHhcCHHHHHHHhcc--------cCCCChH
Q 001625 198 AWFGSGNVNSEIKSESTVVSGSDLDGNACYV-VRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNA--------ELTFGPL 268 (1042)
Q Consensus 198 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~--------~~~~~~l 268 (1042)
.++..+++...... .......+++ ++||.|+||+||+|||+|.|+....+...+... ..+..+|
T Consensus 278 ----eqn~nw~F~~~~~~---~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l 350 (749)
T COG5207 278 ----EQNANWEFLEKKRA---PESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECL 350 (749)
T ss_pred ----hhhcCcchhccccC---chhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhH
Confidence 11223333222111 1111222333 789999999999999999999988777655432 3345789
Q ss_pred HHHHHHHHHHhCCCC--CCCcccCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 001625 269 TIALKKLFAETKPET--GLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSN 346 (1042)
Q Consensus 269 ~~~L~~Lf~~l~~~~--~~~~~isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~ 346 (1042)
.++|.+|+..|.... .+...|+|..|+.+|++.++.|..++||||||||.+||+.|++.+..
T Consensus 351 ~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S---------------- 414 (749)
T COG5207 351 FCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS---------------- 414 (749)
T ss_pred HHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch----------------
Confidence 999999999887553 36778999999999999999999999999999999999999764321
Q ss_pred CcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEeec
Q 001625 347 QGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPV 386 (1042)
Q Consensus 347 ~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~I 386 (1042)
...+.|.++|.+.++.++.|..|+.+++++++...+.+++
T Consensus 415 ~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~l 454 (749)
T COG5207 415 YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFL 454 (749)
T ss_pred hcCCCcchhhhhhhcceecccccccccccccceEEEEeec
Confidence 1125577999999999999999999988876655554443
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-53 Score=483.42 Aligned_cols=151 Identities=33% Similarity=0.565 Sum_probs=129.4
Q ss_pred cccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC--------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhc
Q 001625 230 RGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT--------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSK 301 (1042)
Q Consensus 230 ~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~--------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~ 301 (1042)
+||.|+|||||||||||+|+|+|+||++++..... ..++.++|.+||..|+... ....+.|..|+.+++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG-DRSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHhh
Confidence 69999999999999999999999999999876432 2579999999999995432 25688999999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeee
Q 001625 302 APQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLD 381 (1042)
Q Consensus 302 ~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~d 381 (1042)
.+.|.++.||||||||.+|||.|++++....+.. .......++|+++|+|.+.++++|..|++.+.+.|+|++
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-------~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ 152 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-------NDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLD 152 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhcccccc-------cccccCCceeEEecccEEEeeeEcCCCCCccceecccce
Confidence 8999999999999999999999999986533211 111233578999999999999999999999999999999
Q ss_pred EEeecCC
Q 001625 382 LSLPVPT 388 (1042)
Q Consensus 382 LSL~Ip~ 388 (1042)
|+|+||.
T Consensus 153 lsl~i~~ 159 (328)
T cd02660 153 LSLDIPN 159 (328)
T ss_pred eeeeccc
Confidence 9999975
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.5e-54 Score=477.08 Aligned_cols=127 Identities=54% Similarity=0.889 Sum_probs=105.9
Q ss_pred eEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCC---CCCCCCcceEEEEEEEEeCccCCCeE
Q 001625 914 ATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPG---CTDHDNYDYRLVGVVEHLGTMRGGHY 990 (1042)
Q Consensus 914 a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~---~~~~~~~~Y~L~aVI~H~Gs~~~GHY 990 (1042)
|+|+..|.++|++|+|||+||.|+..+...|++.+|.||..|||.+|+... ........|+|+|||+|.|+.++|||
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY 219 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHY 219 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEe
Confidence 567888999999999999999998766678999999999999999999762 23345689999999999997799999
Q ss_pred EEEEECCCCCc----------cccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEE
Q 001625 991 VAYVRGGPKNK----------VKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 991 va~vr~~~~~~----------~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYe 1040 (1042)
+||+|...... ........++.||+|||+.|++++.++|+..+|||||||
T Consensus 220 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 220 VAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 99999742100 001112237899999999999999999999999999996
No 9
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-53 Score=481.80 Aligned_cols=138 Identities=25% Similarity=0.413 Sum_probs=119.8
Q ss_pred ccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC---------------CChHHHHHHHHHHHhCCCCCCCcccCchhhH
Q 001625 231 GLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT---------------FGPLTIALKKLFAETKPETGLRNVINPRSFF 295 (1042)
Q Consensus 231 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~---------------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~ 295 (1042)
||.|+||||||||+||+|+|+|+||++++..... ..+++.+|+.||..|+.+. ...++|..|+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence 8999999999999999999999999999865321 2478999999999999765 5789999999
Q ss_pred HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEE
Q 001625 296 GCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTV 375 (1042)
Q Consensus 296 ~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~ 375 (1042)
.++. |..++||||||||.+|||.|++++.... .....++|.++|+|++.++++|..|++.+.+
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~------------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~ 141 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK------------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSL 141 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhcc------------CCcccchhhhhcceEEEEEEEeCCCCCcccc
Confidence 9883 6788999999999999999999875421 0123468999999999999999999999999
Q ss_pred EeeeeeEEeecC
Q 001625 376 YEPFLDLSLPVP 387 (1042)
Q Consensus 376 ~EpF~dLSL~Ip 387 (1042)
.|+|++|+|+||
T Consensus 142 ~e~f~~l~l~i~ 153 (324)
T cd02668 142 PSKFYELELQLK 153 (324)
T ss_pred ccccEEEEEEec
Confidence 999999999985
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-53 Score=479.54 Aligned_cols=129 Identities=36% Similarity=0.604 Sum_probs=111.0
Q ss_pred ccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC----CChHHHHHHHHHHHhCCCCCCCcccCchh-hHHHhhhcCCCC
Q 001625 231 GLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT----FGPLTIALKKLFAETKPETGLRNVINPRS-FFGCICSKAPQF 305 (1042)
Q Consensus 231 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~----~~~l~~~L~~Lf~~l~~~~~~~~~isP~~-l~~~l~~~~~~F 305 (1042)
||.|+||||||||+||+|+++|+||+++++...+ ...+..+|+.+|..|.... ...+.|.. |+..++ .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQ--RRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcC--CcccCCHHHHHHHhc--cccc
Confidence 8999999999999999999999999999987642 2567889999999887543 45667766 666553 5789
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEee
Q 001625 306 KGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLP 385 (1042)
Q Consensus 306 ~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~ 385 (1042)
..+.||||||||++||+.|+ ++|.++|+|++.++++|..|++.+.+.|+|.+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~------------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~ 132 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH------------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLS 132 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH------------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecC
Confidence 99999999999999999997 357789999999999999999999999999998888
Q ss_pred cC
Q 001625 386 VP 387 (1042)
Q Consensus 386 Ip 387 (1042)
||
T Consensus 133 i~ 134 (327)
T cd02664 133 FP 134 (327)
T ss_pred CC
Confidence 73
No 11
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-52 Score=473.28 Aligned_cols=138 Identities=30% Similarity=0.532 Sum_probs=112.4
Q ss_pred CCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCCCChHHHHHHHHH---HHhCCCCCCCcccCchhhHHHhhh
Q 001625 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALKKLF---AETKPETGLRNVINPRSFFGCICS 300 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~l~~~L~~Lf---~~l~~~~~~~~~isP~~l~~~l~~ 300 (1042)
..-.+++||.|+||||||||+||+|+|+|.||++++....... ....++.++ ..++... ...+.|..|+.+++.
T Consensus 19 ~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~q~~~~~l~~~~~~~--~~~~~P~~~~~~l~~ 95 (332)
T cd02671 19 ENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS-SVEQLQSSFLLNPEKYNDE--LANQAPRRLLNALRE 95 (332)
T ss_pred ccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC-cHHHHHHHHHHHHHHHhhc--ccccCHHHHHHHHHH
Confidence 3446899999999999999999999999999999876542221 112222222 3333222 245679999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeee
Q 001625 301 KAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFL 380 (1042)
Q Consensus 301 ~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~ 380 (1042)
.++.|.++.||||||||++|||.|+. +|.++|+|.+.++++|..|++.+.+.|+|+
T Consensus 96 ~~~~f~~~~QQDA~EFl~~LLd~L~~------------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~ 151 (332)
T cd02671 96 VNPMYEGYLQHDAQEVLQCILGNIQE------------------------LVEKDFQGQLVLRTRCLECETFTERREDFQ 151 (332)
T ss_pred hccccCCccccCHHHHHHHHHHHHHH------------------------HHHhhhceEEEEEEEeCCCCCeeceecccE
Confidence 99999999999999999999999972 467799999999999999999999999999
Q ss_pred eEEeecCC
Q 001625 381 DLSLPVPT 388 (1042)
Q Consensus 381 dLSL~Ip~ 388 (1042)
+|+||||.
T Consensus 152 ~lsL~i~~ 159 (332)
T cd02671 152 DISVPVQE 159 (332)
T ss_pred EEEEEeCC
Confidence 99999975
No 12
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-53 Score=479.88 Aligned_cols=163 Identities=33% Similarity=0.563 Sum_probs=140.3
Q ss_pred ccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC--------CC---ChHHHHHHHHHHHhCCCCCCCcccCchhhH
Q 001625 227 YVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL--------TF---GPLTIALKKLFAETKPETGLRNVINPRSFF 295 (1042)
Q Consensus 227 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~--------~~---~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~ 295 (1042)
.|.+||.|+||||||||.||||.|++.||+||+.... +. +.++.++..|+..+...+ ..++.|..|+
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~--~haf~Ps~fK 340 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN--LHAFTPSGFK 340 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc--ccccChHHHH
Confidence 3788999999999999999999999999999986432 22 678889999999998665 6899999999
Q ss_pred HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC-----------------CCCCcccccccceEE
Q 001625 296 GCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGI-----------------SSNQGPVFVDYVFGG 358 (1042)
Q Consensus 296 ~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~-----------------~~~~~~siI~~iF~G 358 (1042)
..|+..+..|.||.|||++||+.+|||.||+.+++..++......... ..+.+.++|.++|.|
T Consensus 341 ~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqg 420 (823)
T COG5560 341 KTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQG 420 (823)
T ss_pred HHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999999999999999999987665443322111 112467999999999
Q ss_pred EEEEEEEeCCCCCEEEEEeeeeeEEeecCCCCC
Q 001625 359 QIASTVRCVECGHSSTVYEPFLDLSLPVPTKKA 391 (1042)
Q Consensus 359 ~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~~~~ 391 (1042)
.+++++.|..|+.+|.+++||++|+||||-...
T Consensus 421 myKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~v 453 (823)
T COG5560 421 MYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMV 453 (823)
T ss_pred HhhceeeccCcCceeeeecchhhccccCchhhc
Confidence 999999999999999999999999999997543
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-51 Score=457.28 Aligned_cols=141 Identities=30% Similarity=0.468 Sum_probs=124.6
Q ss_pred ccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC-------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCC
Q 001625 231 GLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT-------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAP 303 (1042)
Q Consensus 231 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~-------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~ 303 (1042)
||.|+||||||||+||+|+++|+||+++++...+ ..++..+|++||..|+... ..++|..|+..++...+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~~~~ 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRMAFP 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHHHCc
Confidence 8999999999999999999999999999876543 3689999999999998754 48999999999999989
Q ss_pred CCC------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCC-CEEEEE
Q 001625 304 QFK------GYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECG-HSSTVY 376 (1042)
Q Consensus 304 ~F~------~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~-~~S~~~ 376 (1042)
.|. +++||||||||.+|||.|++++... ....++|.++|+|++.+.++|..|+ ..+.+.
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------------~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~ 143 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------------GSKGSFIDQLFGIELETKMKCTESPDEEEVST 143 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHHhccc--------------CCCCcHHHHhhceEEEEEEEcCCCCCCCcccc
Confidence 884 5599999999999999999987431 1224689999999999999999999 899999
Q ss_pred eeeeeEEeecCC
Q 001625 377 EPFLDLSLPVPT 388 (1042)
Q Consensus 377 EpF~dLSL~Ip~ 388 (1042)
|+|++|+|+||.
T Consensus 144 e~f~~Lsl~i~~ 155 (305)
T cd02657 144 ESEYKLQCHISI 155 (305)
T ss_pred ccceEEEeecCC
Confidence 999999999964
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-50 Score=455.70 Aligned_cols=142 Identities=30% Similarity=0.380 Sum_probs=123.4
Q ss_pred ccccCCCcchhHHHHHHHhcCHHHHHHHhccc--------CCCChHHHHHHHHHHHhCCCCC------------CCcccC
Q 001625 231 GLANLGNTCFFNSVMQNLLAMSQLQDYFLNAE--------LTFGPLTIALKKLFAETKPETG------------LRNVIN 290 (1042)
Q Consensus 231 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~--------~~~~~l~~~L~~Lf~~l~~~~~------------~~~~is 290 (1042)
||.|+|||||||||||||+++|+||++|+... .+..++.++|.+||..|+.... .+..++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999997622 1235789999999999876432 245799
Q ss_pred chhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCC
Q 001625 291 PRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECG 370 (1042)
Q Consensus 291 P~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~ 370 (1042)
|..|+.+++...+.|..+.||||||||++|||.|++++... ....+.++|+|.+.++++|..|+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------~~~~~~~~f~~~~~~~i~C~~C~ 144 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN----------------LGLNPNDLFKFMIEDRLECLSCK 144 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc----------------ccCCchhheEEEeeEEEEcCCCC
Confidence 99999999999999999999999999999999999887421 11346789999999999999999
Q ss_pred CEEEEEeeeeeEEeecCC
Q 001625 371 HSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 371 ~~S~~~EpF~dLSL~Ip~ 388 (1042)
+.+.+.++|++|+|+||.
T Consensus 145 ~~s~~~e~~~~lsL~l~~ 162 (311)
T cd02658 145 KVKYTSELSEILSLPVPK 162 (311)
T ss_pred CEEEeecceeEEeeeccc
Confidence 999999999999999975
No 15
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-50 Score=459.58 Aligned_cols=143 Identities=26% Similarity=0.391 Sum_probs=117.5
Q ss_pred cccccccCCCcchhHHHHHHHhcCHHHHHHHhcc-----cCCCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcC
Q 001625 228 VVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNA-----ELTFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKA 302 (1042)
Q Consensus 228 ~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~-----~~~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~ 302 (1042)
|++||.|+||||||||+||+|+++|+||++++.. .....++..+|+.||..|+.... ..+.|..+........
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSES--PVKTTELTDKTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCc--cccCcchhheeccCCC
Confidence 5789999999999999999999999999999975 22346799999999999987652 4455544432222234
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeE
Q 001625 303 PQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDL 382 (1042)
Q Consensus 303 ~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dL 382 (1042)
..|..++||||||||.+||+.|++++... ...++|.++|+|.+.+.++|..|++.+.+.++|++|
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~---------------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l 143 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT---------------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDL 143 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC---------------cccchhhhhCceEEEeEEEecCCCceecccccceEE
Confidence 56888999999999999999999887431 123578999999999999999999999999999999
Q ss_pred EeecC
Q 001625 383 SLPVP 387 (1042)
Q Consensus 383 SL~Ip 387 (1042)
+|+||
T Consensus 144 ~l~i~ 148 (334)
T cd02659 144 QVAVK 148 (334)
T ss_pred EEEcC
Confidence 99985
No 16
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-50 Score=449.00 Aligned_cols=153 Identities=36% Similarity=0.521 Sum_probs=128.0
Q ss_pred ccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC------CCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcC
Q 001625 229 VRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL------TFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKA 302 (1042)
Q Consensus 229 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~ 302 (1042)
++||.|+|||||||||||+|+++|+||++++.... ...++.++|+.++..++... ...+.|..|..++....
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASS--GPGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCC--CCccChHHHHHHHHHHH
Confidence 47999999999999999999999999999986332 22578899999999887654 47889999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeE
Q 001625 303 PQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDL 382 (1042)
Q Consensus 303 ~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dL 382 (1042)
+.|..+.||||+|||.+|||.|+++......... .........++|.++|+|++.++++|..|++.+.+.++|+.|
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~----~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l 154 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLK----AVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDL 154 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhhhccccc----ccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceee
Confidence 9999999999999999999999988654322110 011223345789999999999999999999999999999999
Q ss_pred EeecC
Q 001625 383 SLPVP 387 (1042)
Q Consensus 383 SL~Ip 387 (1042)
+|+||
T Consensus 155 ~l~i~ 159 (304)
T cd02661 155 SLDIK 159 (304)
T ss_pred eeecC
Confidence 99985
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-45 Score=398.90 Aligned_cols=110 Identities=41% Similarity=0.601 Sum_probs=91.6
Q ss_pred EEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeCccCCCeEEEEEECC
Q 001625 918 VLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGG 997 (1042)
Q Consensus 918 ~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~ 997 (1042)
..|.++|+||+|||+||.|+..+...|++.+|.||..| ....|+|+|||+|.|+.++|||++|+|.+
T Consensus 121 ~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-------------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~ 187 (240)
T cd02662 121 TVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKP 187 (240)
T ss_pred EEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc-------------CCceEEEEEEEEEeccCCCceEEEEEeCC
Confidence 45788999999999999998657788999999999887 35679999999999977999999999976
Q ss_pred CCCc---------cccccccCCCeEEEEcCceeeeechhhh-cCCCcEEEEEE
Q 001625 998 PKNK---------VKAKKESVGGVWYHASDVYVREVSLEEV-LRCEAYILFYE 1040 (1042)
Q Consensus 998 ~~~~---------~~~~~~~~~~~W~~fnD~~V~~vs~~ev-~~~~aYiLfYe 1040 (1042)
.... .........+.||+|||+.|+++++++| .+.+||||||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 188 LFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 2110 0011223468999999999999999999 88899999996
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-46 Score=390.66 Aligned_cols=160 Identities=26% Similarity=0.376 Sum_probs=119.1
Q ss_pred CccccccccCCCcchhHHHHHHHhcCHHHHHHHh--------cccCCCCh----HHHHHHHHHHHhCCCCCCCcccCchh
Q 001625 226 CYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFL--------NAELTFGP----LTIALKKLFAETKPETGLRNVINPRS 293 (1042)
Q Consensus 226 ~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l--------~~~~~~~~----l~~~L~~Lf~~l~~~~~~~~~isP~~ 293 (1042)
...+.||.|+|||||||++||||+.+..|...|+ +-+.+.+. +...+..+...+-. . ....|+|..
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~-H-g~~sis~~n 145 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGC-H-GPKSISPRN 145 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhcccc-C-CCcccchHH
Confidence 3567899999999999999999999999987332 12223222 22333333333322 1 246799999
Q ss_pred hHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCC---C-----------------CCCCCCCCcccccc
Q 001625 294 FFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPS---E-----------------GNGISSNQGPVFVD 353 (1042)
Q Consensus 294 l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~---~-----------------~~~~~~~~~~siI~ 353 (1042)
|+..+...++.|++..|||+||||.+|||.||++++.-..+.... + +|+-.-..+.++|-
T Consensus 146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~ 225 (415)
T COG5533 146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVA 225 (415)
T ss_pred HHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHH
Confidence 999999999999999999999999999999999987532221100 0 01111123457888
Q ss_pred cceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecC
Q 001625 354 YVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVP 387 (1042)
Q Consensus 354 ~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip 387 (1042)
+.|.|+..++++|..|++.|+++.+|..|++|++
T Consensus 226 ~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~ 259 (415)
T COG5533 226 KTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPY 259 (415)
T ss_pred HHHhhhhhhhhhhhhcCCceeEEeccceeeeccc
Confidence 9999999999999999999999999999998885
No 19
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=423.31 Aligned_cols=253 Identities=28% Similarity=0.500 Sum_probs=182.1
Q ss_pred eCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCCCeEEEcCCCCccccccccccccchhhHHHHHHHhcccccc
Q 001625 110 CLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIKGRSTE 189 (1042)
Q Consensus 110 CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~~~v~Cy~Cd~~v~~~~l~~~~~~~~~l~~~i~~~~~~~~~ 189 (1042)
|+.|+..+|. .+.|...|....+|-+.+.+.+.. .||+.|.++|+...+... ..+.... +
T Consensus 60 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~c~~~i~~~~~~~~-------~~~~~~~-----~ 119 (492)
T KOG1867|consen 60 CLICDSLGCL-------SNSHKLEHSGNKKHNNTIDVNNGL-LYCFACPDFIYDAELLKL-------ADIKKYK-----E 119 (492)
T ss_pred ceechhcccc-------cccccccccccccccccceeehhh-heeccCCcEeeccchhhH-------HHHHhhh-----c
Confidence 8999999986 467899999999999999998754 599999999998665211 1111110 0
Q ss_pred cccccccccccCCCCccccccccccccc----CCCCCCCCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC-
Q 001625 190 ISSVDVEDAWFGSGNVNSEIKSESTVVS----GSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT- 264 (1042)
Q Consensus 190 ~~~~~~e~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~- 264 (1042)
.........+.. .......+...... ..........+++||.|+|||||||++||+|.+.+..+...+...+.
T Consensus 120 ~~~~~~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~ 197 (492)
T KOG1867|consen 120 QPFHQLDSTLLT--HLAEATVCQQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSK 197 (492)
T ss_pred cchhhccchhhh--hhhhhhccchhcccCCcccccccceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhccc
Confidence 000000000000 00000000000000 00111224568999999999999999999999999999888765544
Q ss_pred ------CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 001625 265 ------FGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPS 338 (1042)
Q Consensus 265 ------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~ 338 (1042)
..++.+++..+|..+++... +..+.|..+++.+|+..|.|.++.|||||||+..+++.+|.+.....+.
T Consensus 198 ~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~---- 272 (492)
T KOG1867|consen 198 EPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKS---- 272 (492)
T ss_pred CCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHHHhCcccccccccchHHHHHHhcccccccccccccc----
Confidence 36899999999999998764 6899999999999999999999999999999999999999887111111
Q ss_pred CCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecCCC
Q 001625 339 EGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTK 389 (1042)
Q Consensus 339 ~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~~ 389 (1042)
..-........++++.+|.|.+.+.++|..|+..|.+++||++|+|+||..
T Consensus 273 ~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~ 323 (492)
T KOG1867|consen 273 LIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQ 323 (492)
T ss_pred cccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchh
Confidence 001111225679999999999999999999999999999999999999863
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-44 Score=425.28 Aligned_cols=164 Identities=35% Similarity=0.522 Sum_probs=131.9
Q ss_pred CCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC----------CCChHHHHHHHHHHHhCCCCCCCcccCchh
Q 001625 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL----------TFGPLTIALKKLFAETKPETGLRNVINPRS 293 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~----------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~ 293 (1042)
....+++||.|+|||||||++||||+.++.||..++.... ....+..++..++..++...+ ...+.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHG-QFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCC-ceecCcHH
Confidence 3456889999999999999999999999999977775421 225788888888888887654 56799999
Q ss_pred hHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC--------------------CCCCCCCcccccc
Q 001625 294 FFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEG--------------------NGISSNQGPVFVD 353 (1042)
Q Consensus 294 l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~--------------------~~~~~~~~~siI~ 353 (1042)
|+..+.+..+.|.++.|||+|||+..||+.||+++............ |..........|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 99999999999999999999999999999999999875331100000 0000111233478
Q ss_pred cceEEEEEEEEEeCCCCCEEEEEeeeeeEEeecCC
Q 001625 354 YVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 354 ~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~ 388 (1042)
++|.|++.+.++|..|++.+.++++|.+|+|+||.
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~ 489 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPK 489 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccc
Confidence 89999999999999999999999999999999974
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-41 Score=365.50 Aligned_cols=116 Identities=42% Similarity=0.738 Sum_probs=101.0
Q ss_pred cceEEEEEeccCCCeEEEEEeccccCccCccccccceeecc-cccccCCCCCCCCCCCCCcceEEEEEEEEeCccCCCeE
Q 001625 912 RDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFS-EIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHY 990 (1042)
Q Consensus 912 ~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~~GHY 990 (1042)
+.+.|+..|.++|++|+|||+||.++. +...|+...|.|| +.|||.+|+.. ........|+|+|||+|.|+.++|||
T Consensus 114 ~~~~~~~~i~~lP~iLii~l~R~~~~~-~~~~K~~~~v~~~~~~l~l~~~~~~-~~~~~~~~Y~L~~vI~H~G~~~~GHY 191 (230)
T cd02674 114 RKATKKLTISRLPKVLIIHLKRFSFSR-GSTRKLTTPVTFPLNDLDLTPYVDT-RSFTGPFKYDLYAVVNHYGSLNGGHY 191 (230)
T ss_pred cceEEEEEEecCChhhEeEhhheecCC-CCcccCCceEeccccccccccccCc-ccCCCCceEEEEEEEEeeCCCCCcEE
Confidence 457788999999999999999999975 5568999999999 57999988632 23345678999999999996699999
Q ss_pred EEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEE
Q 001625 991 VAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 991 va~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYe 1040 (1042)
+||+|.. .++.||.|||+.|++++.+++...+||||||+
T Consensus 192 ~~~~~~~-----------~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 192 TAYCKNN-----------ETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred EEEEECC-----------CCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 9999965 25889999999999999999988899999996
No 22
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-42 Score=396.99 Aligned_cols=146 Identities=24% Similarity=0.354 Sum_probs=124.6
Q ss_pred CCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC----CC----ChHHHHHHHHHHHhCCCCCCCcccCchhhH
Q 001625 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL----TF----GPLTIALKKLFAETKPETGLRNVINPRSFF 295 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~----~~----~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~ 295 (1042)
+...+++||+|-|+|||||+++|-|.++|.+|.-++.... +. ..+.+.++.+|..|..+. -.++-|..|.
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~--lQyyVPeg~W 167 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQ--LQYYVPEGFW 167 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHh--hhhhcchhHH
Confidence 3345799999999999999999999999999987664322 22 238899999999998765 5789999999
Q ss_pred HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEE
Q 001625 296 GCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTV 375 (1042)
Q Consensus 296 ~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~ 375 (1042)
+.++.........+||||-|||..|||.|++-++++.. +.++.+.|+|.+...-.|..|-|.-..
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~---------------p~lf~n~f~G~ysdqKIC~~CpHRY~~ 232 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH---------------PQLFSNTFGGSYSDQKICQGCPHRYEC 232 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC---------------cHHHHHHhcCccchhhhhccCCcccCc
Confidence 99877777778899999999999999999998876542 257888999999999999999999989
Q ss_pred EeeeeeEEeec
Q 001625 376 YEPFLDLSLPV 386 (1042)
Q Consensus 376 ~EpF~dLSL~I 386 (1042)
.|+|..|+|+|
T Consensus 233 eE~F~~l~l~i 243 (944)
T KOG1866|consen 233 EESFTTLNLDI 243 (944)
T ss_pred cccceeeeeec
Confidence 99999999887
No 23
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-40 Score=410.78 Aligned_cols=170 Identities=32% Similarity=0.504 Sum_probs=140.0
Q ss_pred CCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC-----------CCChHHHHHHHHHHHhCCCCCCCcccCch
Q 001625 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL-----------TFGPLTIALKKLFAETKPETGLRNVINPR 292 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~-----------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~ 292 (1042)
....|.+||.|+|||||||+.+|||.+.+.+++||+.... ..+.+...+..+...+|... ...+.|.
T Consensus 241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~--~~~v~~~ 318 (842)
T KOG1870|consen 241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN--KSAVAPT 318 (842)
T ss_pred CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC--ccccCch
Confidence 3446899999999999999999999999999999975321 12567788999999999876 3489999
Q ss_pred hhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCC--------------CCCCCCCCcccccccceEE
Q 001625 293 SFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSE--------------GNGISSNQGPVFVDYVFGG 358 (1042)
Q Consensus 293 ~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~--------------~~~~~~~~~~siI~~iF~G 358 (1042)
.+...++...+.|.++.|||.+|||.+|||.||+.+.....+..... .+........++|.++|.|
T Consensus 319 ~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~ 398 (842)
T KOG1870|consen 319 SFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDG 398 (842)
T ss_pred hhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecc
Confidence 99999999999999999999999999999999999987655511100 1111223456899999999
Q ss_pred EEEEEEEeCCCCCEEEEEeeeeeEEeecCCCCCCCCC
Q 001625 359 QIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKK 395 (1042)
Q Consensus 359 ~l~s~v~C~~C~~~S~~~EpF~dLSL~Ip~~~~~~~~ 395 (1042)
.+.+.+.|..|+.++.++++|..|+||+|........
T Consensus 399 ~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~ 435 (842)
T KOG1870|consen 399 TYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLE 435 (842)
T ss_pred eecccccCccCCCceEEeeccccccccCCCCccccee
Confidence 9999999999999999999999999999976654433
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-41 Score=382.88 Aligned_cols=146 Identities=23% Similarity=0.337 Sum_probs=121.7
Q ss_pred CCCCCCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC--CC--ChHHHHHHHHHHHhCCCCCCCcccCchhhHH
Q 001625 221 LDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL--TF--GPLTIALKKLFAETKPETGLRNVINPRSFFG 296 (1042)
Q Consensus 221 ~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~--~~--~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~ 296 (1042)
.+.+...|++||+|.|.||||||+||+||.+..||+.++.... +. ..+..+|+++|..|+.+. .+++..+|..
T Consensus 185 YnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~---~PvdTteltr 261 (1089)
T COG5077 185 YNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGE---EPVDTTELTR 261 (1089)
T ss_pred cccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccC---CCcchHHhhh
Confidence 3445667999999999999999999999999999999987653 22 568899999999999764 7899999988
Q ss_pred HhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEE
Q 001625 297 CICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVY 376 (1042)
Q Consensus 297 ~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~ 376 (1042)
.++ +..+..+.|||.|||-+.|+|.|+..++... -...++.+|-|++.+.+.|.+-.+.|.+.
T Consensus 262 sfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt~---------------VEnaln~ifVgkmksyikCvnvnyEsarv 324 (1089)
T COG5077 262 SFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV---------------VENALNGIFVGKMKSYIKCVNVNYESARV 324 (1089)
T ss_pred hcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCCh---------------hhhHHhHHHHHHhhceeeEEEechhhhhH
Confidence 775 4457788999999999999999987553321 12457789999999999999988888888
Q ss_pred eeeeeEEeec
Q 001625 377 EPFLDLSLPV 386 (1042)
Q Consensus 377 EpF~dLSL~I 386 (1042)
|.||+|.|.+
T Consensus 325 edfwdiqlNv 334 (1089)
T COG5077 325 EDFWDIQLNV 334 (1089)
T ss_pred HHHHHHHhcc
Confidence 8888888777
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-39 Score=347.84 Aligned_cols=105 Identities=31% Similarity=0.511 Sum_probs=83.2
Q ss_pred eEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEE
Q 001625 914 ATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVA 992 (1042)
Q Consensus 914 a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva 992 (1042)
+.|+.+|.+||+||+||||||.+.. +....+.+ ..++|.+|+. ....|+|+|||+|.| ++++|||+|
T Consensus 137 a~k~~~i~~~P~vL~i~lkRf~~~~-----~~~~~~~~-~~~~~~~~~~------~~~~Y~L~~VV~H~G~~~~~GHY~a 204 (245)
T cd02673 137 AISSERIMTFPECLSINLKRYKLRI-----ATSDYLKK-NEEIMKKYCG------TDAKYSLVAVICHLGESPYDGHYIA 204 (245)
T ss_pred ceeechhhhCChhhEEeeEeeeecc-----cccccccc-cccccccccC------CCceEEEEEEEEECCCCCCCceEEE
Confidence 5566779999999999999997752 11222222 2456777764 346799999999999 589999999
Q ss_pred EEECCCCCccccccccCCCeEEEEcCceeeeechhhhc---CCCcEEEEEE
Q 001625 993 YVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVL---RCEAYILFYE 1040 (1042)
Q Consensus 993 ~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~---~~~aYiLfYe 1040 (1042)
|+|.+. .+++||.|||+.|+++++++|+ ..+||||||+
T Consensus 205 ~vk~~~----------~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 205 YTKELY----------NGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred EEEcCC----------CCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 999651 1578999999999999999998 4689999996
No 26
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.3e-39 Score=341.72 Aligned_cols=100 Identities=36% Similarity=0.596 Sum_probs=87.6
Q ss_pred EEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeCccCCCeEEEEEE
Q 001625 916 KRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVR 995 (1042)
Q Consensus 916 k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr 995 (1042)
++..|.+||+||+|||+||.|+. +...|++++|.||..| ....|+|+|||+|.|++++|||++|+|
T Consensus 121 ~~~~i~~lP~vL~i~LkRF~~~~-~~~~Ki~~~v~FP~~l-------------~~~~Y~L~aVi~H~G~~~~GHY~~~i~ 186 (228)
T cd02665 121 QERWFTELPPVLTFELSRFEFNQ-GRPEKIHDKLEFPQII-------------QQVPYELHAVLVHEGQANAGHYWAYIY 186 (228)
T ss_pred hhhhhhhCChhhEEEeEeeEEcC-CccEECCEEEEeeCcc-------------CCceeEEEEEEEecCCCCCCEEEEEEE
Confidence 45568899999999999999976 5668999999999776 235799999999999999999999999
Q ss_pred CCCCCccccccccCCCeEEEEcCceeeeechhhhcCC--------CcEEEEEE
Q 001625 996 GGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRC--------EAYILFYE 1040 (1042)
Q Consensus 996 ~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~--------~aYiLfYe 1040 (1042)
.. .++.||+|||+.|++++.++|+.. .||||||.
T Consensus 187 ~~-----------~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 187 KQ-----------SRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred cC-----------CCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 54 368999999999999999999743 59999994
No 27
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-38 Score=361.49 Aligned_cols=148 Identities=22% Similarity=0.334 Sum_probs=120.5
Q ss_pred ccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCC----------------C----------ChHHHHHHHHHHHhCCC
Q 001625 229 VRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT----------------F----------GPLTIALKKLFAETKPE 282 (1042)
Q Consensus 229 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~----------------~----------~~l~~~L~~Lf~~l~~~ 282 (1042)
++||.|+||||||||+||+|+++|+||++++..... . ..++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999975411 0 15889999999999976
Q ss_pred CCCCcccCchhhHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEE
Q 001625 283 TGLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIAS 362 (1042)
Q Consensus 283 ~~~~~~isP~~l~~~l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s 362 (1042)
. ...+.|..++..+. ..||||+||+..||+.|+.+++....... ...........++|.++|+|++.+
T Consensus 81 ~--~~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~--~~~~~~~~~~~~~I~~lF~G~~~~ 148 (343)
T cd02666 81 N--TRSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPISNAFA--GPDTEDDKEQSDLIKRLFSGKTKQ 148 (343)
T ss_pred C--CCccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCcccccc--CcccccccchhhhhhHhceeeEEE
Confidence 5 58899999998664 29999999999999999999864322110 001111224468999999999999
Q ss_pred EEEeCCCC---CEEEEEeeeeeEEeecCC
Q 001625 363 TVRCVECG---HSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 363 ~v~C~~C~---~~S~~~EpF~dLSL~Ip~ 388 (1042)
+++|..|+ ..+.+.|+|++|+|+|+.
T Consensus 149 ~i~c~~~~~~~~~s~~~E~F~~L~l~I~~ 177 (343)
T cd02666 149 QLVPESMGNQPSVRTKTERFLSLLVDVGK 177 (343)
T ss_pred EEEecccCCCCCCccccceeEEEEEecCc
Confidence 99999997 789999999999999964
No 28
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=3.1e-36 Score=328.12 Aligned_cols=112 Identities=47% Similarity=0.828 Sum_probs=92.4
Q ss_pred EEEeccCCCeEEEEEeccccC-ccCccccccceeecc-cccccCCCCCCCCC-CCCCcceEEEEEEEEeCccCCCeEEEE
Q 001625 917 RVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFS-EIINLRPYMDPGCT-DHDNYDYRLVGVVEHLGTMRGGHYVAY 993 (1042)
Q Consensus 917 ~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP-~~LdL~~~~~~~~~-~~~~~~Y~L~aVI~H~Gs~~~GHYva~ 993 (1042)
+..|.++|++|+|+|+||.|+ ..+...|+...|.|| ..|||.+++..... ......|+|+|||+|.|+.++|||+||
T Consensus 152 ~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~ 231 (269)
T PF00443_consen 152 QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAY 231 (269)
T ss_dssp EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEE
T ss_pred ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEe
Confidence 667899999999999999887 445678999999999 79999999865432 124578999999999998899999999
Q ss_pred EECCCCCccccccccCCCeEEEEcCceeeeechhhhcC---CCcEEEEE
Q 001625 994 VRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLR---CEAYILFY 1039 (1042)
Q Consensus 994 vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~---~~aYiLfY 1039 (1042)
||.. ..+.||.|||+.|++++.++|.. .+||||||
T Consensus 232 v~~~-----------~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 232 VRDS-----------DDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEET-----------TTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred eccc-----------cCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 9964 34569999999999999999998 88999999
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-35 Score=313.02 Aligned_cols=118 Identities=52% Similarity=0.834 Sum_probs=102.2
Q ss_pred cceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCC----CCCCCCCcceEEEEEEEEeCc-cC
Q 001625 912 RDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDP----GCTDHDNYDYRLVGVVEHLGT-MR 986 (1042)
Q Consensus 912 ~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~----~~~~~~~~~Y~L~aVI~H~Gs-~~ 986 (1042)
+.+.++..|.++|++|+|||+||.++..+...|+..+|.||..|++..++.. .........|+|+|||+|.|. +.
T Consensus 128 ~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~ 207 (255)
T cd02257 128 QEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSAD 207 (255)
T ss_pred cceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCC
Confidence 5577889999999999999999999765667899999999999999888752 233456788999999999995 59
Q ss_pred CCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhh-----cCCCcEEEEEE
Q 001625 987 GGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEV-----LRCEAYILFYE 1040 (1042)
Q Consensus 987 ~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev-----~~~~aYiLfYe 1040 (1042)
+|||+||+|.+ ..+.||+|||+.|++++.+++ ...+||||||+
T Consensus 208 ~GHY~~~~~~~-----------~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 208 SGHYVAYVKDP-----------SDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred CcCeEEEEeCC-----------CCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 99999999965 248899999999999999999 45679999996
No 30
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=1.2e-34 Score=313.91 Aligned_cols=240 Identities=23% Similarity=0.343 Sum_probs=192.2
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCCCeEEEcCCCCccccccccccccchhhHHHHHHHhc
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIK 184 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~~~v~Cy~Cd~~v~~~~l~~~~~~~~~l~~~i~~~~ 184 (1042)
-+.|+||.||+++.||. ..+||+.|+.+.+|++++++.+....||..-++.+.++.+ .++.+.++
T Consensus 39 LnvyAclvcg~y~qgr~-----~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~ei~d~s~----------~~ikhslk 103 (442)
T KOG2026|consen 39 LNVYACLVCGKYFQGRG-----EKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYEIDDPSL----------GDIKHSLK 103 (442)
T ss_pred cceeeeeeeCchhhCcC-----ccccchhccccccccceeccccceeEEecchhccccCchh----------hhhhcccc
Confidence 67899999999999984 8999999999999999999998666688888888888775 56667777
Q ss_pred ccccccccccccccccCCCCcccccccccccccCCCCCCCCC-ccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC
Q 001625 185 GRSTEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLDGNAC-YVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL 263 (1042)
Q Consensus 185 ~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~ 263 (1042)
++.+......+.++ +..+. ..+....+ +|++||.|+-++-|.|++||+|.+.+++|+||+..+.
T Consensus 104 ptftr~~cp~lD~~-------------nr~~~--raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n 168 (442)
T KOG2026|consen 104 PTFTKTDCPNLDKV-------------NRKLS--RALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN 168 (442)
T ss_pred ceeehhhccccccc-------------chhhh--hhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc
Confidence 77665433222210 11111 33444433 5899999999999999999999999999999998755
Q ss_pred CC---ChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhc-CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 001625 264 TF---GPLTIALKKLFAETKPETGLRNVINPRSFFGCICSK-APQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSE 339 (1042)
Q Consensus 264 ~~---~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~-~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~ 339 (1042)
.. ..+...|..+.+.+|++..++..++|+++++++... ...|..++|-|+.|||.|||+.||..+....
T Consensus 169 ~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k------- 241 (442)
T KOG2026|consen 169 YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK------- 241 (442)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-------
Confidence 33 678889999999999999999999999999998774 4689999999999999999999999876532
Q ss_pred CCCCCCCCcccccccceEEEEEEEEEeCC----CCCEEEEEeeeeeEEeecCC
Q 001625 340 GNGISSNQGPVFVDYVFGGQIASTVRCVE----CGHSSTVYEPFLDLSLPVPT 388 (1042)
Q Consensus 340 ~~~~~~~~~~siI~~iF~G~l~s~v~C~~----C~~~S~~~EpF~dLSL~Ip~ 388 (1042)
...+||+..|+|.++....=.. --......-||+.|.|+||.
T Consensus 242 -------~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~ 287 (442)
T KOG2026|consen 242 -------KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPP 287 (442)
T ss_pred -------CchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCC
Confidence 2348999999999988765544 22335566788888888875
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-36 Score=340.38 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=99.1
Q ss_pred CCccccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCCCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCC
Q 001625 225 ACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQ 304 (1042)
Q Consensus 225 ~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~ 304 (1042)
.+.+++||.|..-|||+|+.+|+|+..|.|++.++.. . ...+-...|.+.+++..
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts--------------------~---~~~~et~dlt~sfgw~s-- 137 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS--------------------E---NDSLETKDLTQSFGWTS-- 137 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC--------------------C---cccccchhhHhhcCCCc--
Confidence 3568899999999999999999999999999877621 1 34555556666655432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEe
Q 001625 305 FKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSL 384 (1042)
Q Consensus 305 F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL 384 (1042)
-..|+|||.+|+-+.++|.|+...+... ...+|.+++.|.+...+.|++|+..+++.+.|+||.|
T Consensus 138 ~ea~~qhdiqelcr~mfdalehk~k~t~---------------~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl 202 (1203)
T KOG4598|consen 138 NEAYDQHDVQELCRLMFDALEHKWKGTE---------------HEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPL 202 (1203)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhhcCch---------------HHHHHHHHhcchHHHHHHHHHcCccccccceeecccc
Confidence 2358999999999999999976654322 2368999999999999999999999999999999999
Q ss_pred ec
Q 001625 385 PV 386 (1042)
Q Consensus 385 ~I 386 (1042)
+|
T Consensus 203 ~v 204 (1203)
T KOG4598|consen 203 AV 204 (1203)
T ss_pred cc
Confidence 88
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.2e-33 Score=355.59 Aligned_cols=141 Identities=26% Similarity=0.417 Sum_probs=121.6
Q ss_pred ccc-cccccCCCcchhHHHHHHHhcCHHHHHHHhcccC------CCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhh
Q 001625 227 YVV-RGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL------TFGPLTIALKKLFAETKPETGLRNVINPRSFFGCIC 299 (1042)
Q Consensus 227 ~~~-~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~ 299 (1042)
.+. +||.|+||||||||+||+||.++.||+.++.... +...+..+|+.||..|+..+ ..+|.|..+...+.
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~--~k~Vdt~~~~~~~~ 244 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSK--RKYVDTSELTKSLG 244 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcC--CCCcCchhhhhhhh
Confidence 455 8999999999999999999999999999998773 23679999999999999876 56999999999997
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeee
Q 001625 300 SKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPF 379 (1042)
Q Consensus 300 ~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF 379 (1042)
... ...++|||+|||++.|+|.|++.+.... ....|.++|.|.+.+.+.|..|...+.+.|.|
T Consensus 245 ~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f 307 (1093)
T KOG1863|consen 245 WDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------------VENTLQDLFTGKMKSVIKCIDVDFESSRSESF 307 (1093)
T ss_pred ccc--ccHHhhhhHHHHHHHHHHHHHhhccchh---------------hhhhhhhhhcCCcceEEEEEeeeeeccccccc
Confidence 765 5668999999999999999988775432 13568899999999999999999988888888
Q ss_pred eeEEeec
Q 001625 380 LDLSLPV 386 (1042)
Q Consensus 380 ~dLSL~I 386 (1042)
++|.|++
T Consensus 308 ~d~ql~~ 314 (1093)
T KOG1863|consen 308 LDLQLNG 314 (1093)
T ss_pred cCccccc
Confidence 8887776
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=4.1e-31 Score=291.01 Aligned_cols=117 Identities=27% Similarity=0.369 Sum_probs=93.7
Q ss_pred ccccceEEEEEeccCCC----eEEEEEeccccCcc------CccccccceeecccccccCCCCCCCCCCCCCcceEEEEE
Q 001625 909 KVKRDATKRVLINKAPP----ILTIHLKRFSQDAR------GRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGV 978 (1042)
Q Consensus 909 ~~~~~a~k~~~I~~lP~----vLiIhLkRF~~d~~------g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aV 978 (1042)
++++.++|+..|.+||+ ||+||||||.+... ....|+...|.||..+++......+ ......|+|+||
T Consensus 141 ~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~--~~~~~~Y~L~gv 218 (268)
T cd02672 141 CKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG--QESIYKYELVGY 218 (268)
T ss_pred CcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC--CCCCceEEEEEE
Confidence 33577899999999999 99999999986532 1235788899999888776554332 234578999999
Q ss_pred EEEeCc-cCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEE
Q 001625 979 VEHLGT-MRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 979 I~H~Gs-~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYe 1040 (1042)
|+|+|+ .++|||+||||.+.+. ...++||.|||+.|++|++ .||||||+
T Consensus 219 V~hig~~~~~GHyva~vk~~~~~-------~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 219 VCEINDSSRGQHNVVFVIKVNEE-------STHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred EEEecCCCCCCcEEEEEEccCCC-------CCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 999994 5999999999975321 1367899999999999998 79999995
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.6e-30 Score=302.76 Aligned_cols=161 Identities=27% Similarity=0.372 Sum_probs=120.1
Q ss_pred ccccccccCCCcchhH--HHHHHHhcCHHHHHHHhcccCCC-------ChHHHHHHHHHHHhCCCCCCCcccCchhhHHH
Q 001625 227 YVVRGLANLGNTCFFN--SVMQNLLAMSQLQDYFLNAELTF-------GPLTIALKKLFAETKPETGLRNVINPRSFFGC 297 (1042)
Q Consensus 227 ~~~~GL~NlGNTCYmN--SVLQ~L~~ip~fr~~~l~~~~~~-------~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~ 297 (1042)
...-|..|.+++|+.| +|.|.+..+..++...+...... ..+...+..++............+.|..++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 3567999999999999 99999999998886655433222 23344444455444433334578899999999
Q ss_pred hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC----CCCCC-------------CCcccccccceEEEE
Q 001625 298 ICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEG----NGISS-------------NQGPVFVDYVFGGQI 360 (1042)
Q Consensus 298 l~~~~~~F~~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~----~~~~~-------------~~~~siI~~iF~G~l 360 (1042)
+++....|..+.|||||||+.++++.+++-............. .+... .....+++.+|.|++
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 9999999999999999999999999998876543311110000 11111 125688999999999
Q ss_pred EEEEEeCCCCCEEEEEeeeeeEEeecC
Q 001625 361 ASTVRCVECGHSSTVYEPFLDLSLPVP 387 (1042)
Q Consensus 361 ~s~v~C~~C~~~S~~~EpF~dLSL~Ip 387 (1042)
..++.|+.|.+.+.+.+.|.|++++++
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~ 416 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVE 416 (587)
T ss_pred eeeeeeccccccccccccccccceecc
Confidence 999999999999999999999998874
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.95 E-value=8.4e-27 Score=261.41 Aligned_cols=152 Identities=26% Similarity=0.294 Sum_probs=118.4
Q ss_pred cccccCCCcchhHHHHHHHhcCHHHHHHHhccc-CC-CChHHHHHHHHHHHhC-CCCCCCcccCchhhHHHhhhcCCCCC
Q 001625 230 RGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAE-LT-FGPLTIALKKLFAETK-PETGLRNVINPRSFFGCICSKAPQFK 306 (1042)
Q Consensus 230 ~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~-~~-~~~l~~~L~~Lf~~l~-~~~~~~~~isP~~l~~~l~~~~~~F~ 306 (1042)
.||.|.+++||+||+||+|+.+|++|+.++... .. ..+|.+.|.-||..|. ... .....+..|+.+++.......
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~~c~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l~~~~~a~~ 78 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHLECPKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRALSWIPEAAA 78 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCcCCCccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHHhcCHHHHh
Confidence 499999999999999999999999999999876 33 3799999999999998 655 466778899998877644444
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCCCCCEEEEEeeeeeEEee
Q 001625 307 GYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLP 385 (1042)
Q Consensus 307 ~~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C~~~S~~~EpF~dLSL~ 385 (1042)
-+.|+|.++|+++||++|+.++......... ..........+.|.++|+......++|..|+..+.+.+..+.+.|.
T Consensus 79 l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~ 155 (295)
T PF13423_consen 79 LGLQQDIQSLNRFLLEQLSMELLTFKPDIFH--TSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLP 155 (295)
T ss_pred cchhHHHHHHHHHHHHHHhHHHHhcCccccc--ccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeecc
Confidence 5669999999999999999998765432111 1112223445779999999999999999999877666554444433
No 36
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=8.3e-26 Score=243.78 Aligned_cols=193 Identities=21% Similarity=0.344 Sum_probs=130.9
Q ss_pred CCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccCCc
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDS 886 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~n 886 (1042)
.|||+.||++.|+++++.-+-. ..++...+++..... .++..+.++++.++..... .
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~---~~~~~~~~g~~~~~~---------~~~~~e~~l~l~ip~~~~~-----------~ 78 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE---PKVDIIHGGKKDQDD---------DKLVNERLLQIPVPDDDDG-----------G 78 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh---HHHHHHhcCcccccc---------ccccccceEEeecccCCCC-----------C
Confidence 5999999999999998863321 122333333222111 1344567777777643210 1
Q ss_pred ceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCCC-
Q 001625 887 QLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGC- 965 (1042)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~~- 965 (1042)
.+....|. +.+.-.. .|.++|++|+||||||.|+. +...|+.++|.||..|||.+|+....
T Consensus 79 ~~tLedcL------e~~~~~e-----------~i~~lP~vLiIhLKRF~~~~-~~~~Kl~~~I~fP~~Ldl~~~~~~~~~ 140 (241)
T cd02670 79 GITLEQCL------EQYFNNS-----------VFAKAPSCLIICLKRYGKTE-GKAQKMFKKILIPDEIDIPDFVADDPR 140 (241)
T ss_pred cCCHHHHH------HHHhchh-----------hhhhCCCeEEEEEEccccCC-CcceeCCcEECCCCcCCchhhcccccc
Confidence 12222233 2221111 19999999999999999986 66789999999999999999986542
Q ss_pred -------------------CCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeec
Q 001625 966 -------------------TDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVS 1025 (1042)
Q Consensus 966 -------------------~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs 1025 (1042)
.......|+|+|||+|.| ++++|||+||||..............++.||+|||..|+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~ 220 (241)
T cd02670 141 ACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGV 220 (241)
T ss_pred cccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccccc
Confidence 123457899999999999 689999999999764221111223346899999999988765
Q ss_pred hh------hhcCCCcEEEEEE
Q 001625 1026 LE------EVLRCEAYILFYE 1040 (1042)
Q Consensus 1026 ~~------ev~~~~aYiLfYe 1040 (1042)
.. .+...+||||||+
T Consensus 221 ~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 221 SNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccchhcccCCceEEEeC
Confidence 33 4567789999996
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=243.99 Aligned_cols=120 Identities=27% Similarity=0.466 Sum_probs=101.4
Q ss_pred cceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCC-CCCC---CCCCcceEEEEEEEEeC-ccC
Q 001625 912 RDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMD-PGCT---DHDNYDYRLVGVVEHLG-TMR 986 (1042)
Q Consensus 912 ~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~-~~~~---~~~~~~Y~L~aVI~H~G-s~~ 986 (1042)
..+.+++.|.+||++|++||+||.|...|...|+...+.||-.|.+..-+. +... ......|+|.|||.|.| ++.
T Consensus 291 V~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsat 370 (420)
T KOG1871|consen 291 VEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSAT 370 (420)
T ss_pred echhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccc
Confidence 446778889999999999999999987888899999999998888755443 2222 33456799999999999 899
Q ss_pred CCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCC----CcEEEEEEEC
Q 001625 987 GGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRC----EAYILFYEKI 1042 (1042)
Q Consensus 987 ~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~----~aYiLfYeRi 1042 (1042)
.|||+..+-+. .-+.|+++||..|..+..++|+.. +||+|+|+|.
T Consensus 371 vghYl~dv~~s-----------~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 371 VGHYLEDVSRS-----------VPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred cCceEEeeeec-----------ccCceeEeccceeeeccHhhhccccCccchheeEeeec
Confidence 99999999865 456799999999999999999875 5999999873
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-24 Score=243.09 Aligned_cols=126 Identities=24% Similarity=0.315 Sum_probs=98.9
Q ss_pred cccccccCCCcchhHHHHHHHhcCHHHHHHHhcccC----C-----CChHHHHHHHHHHHhCCCCCCCcccCchhhHHHh
Q 001625 228 VVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL----T-----FGPLTIALKKLFAETKPETGLRNVINPRSFFGCI 298 (1042)
Q Consensus 228 ~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~----~-----~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l 298 (1042)
-++||.|+|||||||+.+|||-.+|+++..+..... . ...+..+++.+|+.|... ..+.|..|++.+
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl 179 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTL 179 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHH
Confidence 356999999999999999999999999887765331 1 156788899999999864 789999999999
Q ss_pred hhcCCCCCC------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCcccccccceEEEEEEEEEeCC
Q 001625 299 CSKAPQFKG------YQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVE 368 (1042)
Q Consensus 299 ~~~~~~F~~------~~QQDAhEFL~~LLd~L~~e~~~~~k~~~~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~ 368 (1042)
.+..|+|.- +.||||.|.+..+|-.++.-+...... .....+++.+|++++..+..|..
T Consensus 180 ~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~-----------~~~~~~~d~~f~~~~~~t~~~~e 244 (473)
T KOG1872|consen 180 SSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA-----------PCLEAEAAAGFGAEFSTTMSCSE 244 (473)
T ss_pred HHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc-----------cchhHHHHHhhccccccceeecc
Confidence 999998865 899999999999999998765332111 02346788888888888766633
No 39
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.47 E-value=2.2e-14 Score=123.33 Aligned_cols=54 Identities=30% Similarity=0.890 Sum_probs=46.9
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCCCeEEEcCCCCccccc
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVE 164 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~~~v~Cy~Cd~~v~~~ 164 (1042)
.++|+||+||+++|||+ .++||+.|+++++|+|+|++.+.. +|||.|+++|+++
T Consensus 9 ~~lw~CL~Cg~~~C~~~-----~~~Ha~~H~~~~~H~l~v~~~~~~-i~C~~C~~~v~~~ 62 (63)
T PF02148_consen 9 SNLWLCLTCGYVGCGRY-----SNGHALKHYKETGHPLAVSLSTGS-IWCYACDDYVYDP 62 (63)
T ss_dssp SSEEEETTTS-EEETTT-----STSHHHHHHHHHT--EEEETTTTC-EEETTTTEEEEST
T ss_pred CceEEeCCCCcccccCC-----cCcHHHHhhcccCCeEEEECCCCe-EEEcCCCcEEeCC
Confidence 68999999999999986 579999999999999999999855 6999999999875
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.31 E-value=2.6e-12 Score=152.86 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=156.0
Q ss_pred CccHHHHHhhhhhhcCccC--CcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCc-ccccccC
Q 001625 808 NQDCAEVESGLTNDVNPAV--PQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYS-AEKVYQS 884 (1042)
Q Consensus 808 ~QDa~Ef~~~l~~~l~~~~--~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~-~~e~~~~ 884 (1042)
-+|+++|......+..... .......+...|+.+++...+|. .|+.++......+.+.+.+++...-. ..+....
T Consensus 609 ~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg--~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F 686 (1118)
T KOG1275|consen 609 HLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRCG--ECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNF 686 (1118)
T ss_pred hhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhcc--cccchhhhhhhhhheeecCCCccchhhcccccch
Confidence 4566666555444433322 22244678899999999999996 67766666668888888887665422 2222222
Q ss_pred CcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccC--ccccccceeecccccccCCCC
Q 001625 885 DSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARG--RLSKLNGHVNFSEIINLRPYM 961 (1042)
Q Consensus 885 ~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g--~~~Ki~~~V~fP~~LdL~~~~ 961 (1042)
.+.+....+. .+....||+.|++.++...+..++.||.+|.|.+--+.-. ... +..|....|++|+.+.|...-
T Consensus 687 ~~iL~R~l~l---~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k 763 (1118)
T KOG1275|consen 687 VEILKRSLSL---FKNKQAWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISK 763 (1118)
T ss_pred HHHhhhhhhc---ccccccccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEec
Confidence 2344444443 1122379999999999999999999999999987776532 121 223667889999887774321
Q ss_pred CC----------------CCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeee
Q 001625 962 DP----------------GCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREV 1024 (1042)
Q Consensus 962 ~~----------------~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~v 1024 (1042)
.. +.....-++|+|.|+|.|+| +-+.+|+|++||...+.+... ..+++||.|||..|.+|
T Consensus 764 ~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~---~~dsqWylFNDfLV~~i 840 (1118)
T KOG1275|consen 764 NKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIK---PDDSQWYLFNDFLVSEI 840 (1118)
T ss_pred ccceeeeeeccccCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccC---cCcceeEEEcceeeeeC
Confidence 10 01122337899999999999 679999999999875554321 34589999999999999
Q ss_pred chhhhcCCC-----cEEEEE
Q 001625 1025 SLEEVLRCE-----AYILFY 1039 (1042)
Q Consensus 1025 s~~ev~~~~-----aYiLfY 1039 (1042)
+++|++... |-||+|
T Consensus 841 te~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 841 TEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ChHHheEeccCccCcEEEEE
Confidence 999998764 999999
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.90 E-value=4.3e-10 Score=126.05 Aligned_cols=52 Identities=27% Similarity=0.705 Sum_probs=49.4
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCCCeEEEcCCCCccc
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIP 162 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~~~v~Cy~Cd~~v~ 162 (1042)
.+||+||.||++||||| ..+||++||.+++|++++.|++ +.||.|+-|+||.
T Consensus 238 ~~LwicliCg~vgcgrY-----~eghA~rHweet~H~yalel~t-qrVWDYAGDnYVh 289 (493)
T KOG0804|consen 238 EDLWICLICGNVGCGRY-----KEGHARRHWEETGHCYALELET-QRVWDYAGDNYVH 289 (493)
T ss_pred ccEEEEEEccceecccc-----cchhHHHHHHhhcceEEEeecc-eeeeecccchhhh
Confidence 89999999999999998 7899999999999999999998 7789999999994
No 42
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=98.66 E-value=1.6e-08 Score=82.81 Aligned_cols=40 Identities=35% Similarity=0.895 Sum_probs=36.0
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEEEeccCC
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENP 149 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~~~l~~~ 149 (1042)
.++|+||.|++++|+|. ..+|+..|+.+++|++++++.+.
T Consensus 9 ~~l~~CL~C~~~~c~~~-----~~~h~~~H~~~t~H~~~~~~~~~ 48 (50)
T smart00290 9 ENLWLCLTCGQVGCGRY-----QLGHALEHFEETGHPLVVKLGTQ 48 (50)
T ss_pred CCeEEecCCCCcccCCC-----CCcHHHHHhhhhCCCEEEEcccc
Confidence 56999999999999985 46899999999999999999763
No 43
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.05 E-value=0.00055 Score=77.37 Aligned_cols=210 Identities=27% Similarity=0.363 Sum_probs=166.9
Q ss_pred CCCccHHHHHhhhhhhcCccCCcc------------------cCCccccccceeeEEEeeeccCCCcccccccccceeee
Q 001625 806 CFNQDCAEVESGLTNDVNPAVPQR------------------EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCS 867 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~~~~------------------~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~ 867 (1042)
..||||+|||..|++.|++.+... ....+..+|+|.+.+.++|. .|+..+...+.++.++
T Consensus 63 ~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~--~C~~~s~~~e~f~~Ls 140 (300)
T cd02663 63 YMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCL--TCETVSSRDETFLDLS 140 (300)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeC--CCCCCccccceeEEec
Confidence 479999999999999998876421 34567899999999999997 6787788888888888
Q ss_pred ccCCCCCCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCcc-Ccccccc
Q 001625 868 VDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDAR-GRLSKLN 946 (1042)
Q Consensus 868 l~~~~~~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~-g~~~Ki~ 946 (1042)
++.+.... .. .+...+...+ ..+...+|.|++|+.++.++|+..|.++|+||+|||+||.|+.. ++..|+.
T Consensus 141 l~i~~~~s--l~---~~L~~~~~~E---~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 212 (300)
T cd02663 141 IDVEQNTS--IT---SCLRQFSATE---TLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLF 212 (300)
T ss_pred cCCCCcCC--HH---HHHHHhhccc---ccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecC
Confidence 88765211 10 0001111111 11122468999999999999999999999999999999999854 4568999
Q ss_pred ceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeec
Q 001625 947 GHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVS 1025 (1042)
Q Consensus 947 ~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs 1025 (1042)
.+|.||..|+|.++... .......|+|+|||+|.| ++++|||+||+|. ++.||+|||+.|++++
T Consensus 213 ~~v~fp~~L~~~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-------------~~~W~~fdD~~V~~~~ 277 (300)
T cd02663 213 YRVVFPLELRLFNTTDD--AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-------------HGGWLLFDDETVEKID 277 (300)
T ss_pred ceEecCcEEeccccccc--cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-------------CCcEEEEcCCceEEcC
Confidence 99999999999877532 223457899999999999 5899999999993 5789999999999999
Q ss_pred hhhhc--------CCCcEEEEEE
Q 001625 1026 LEEVL--------RCEAYILFYE 1040 (1042)
Q Consensus 1026 ~~ev~--------~~~aYiLfYe 1040 (1042)
.++|. ..+||||||+
T Consensus 278 ~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 278 ENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred HHHHHHhcCCCCCCCceEEEEeC
Confidence 99996 4579999996
No 44
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.85 E-value=0.001 Score=76.28 Aligned_cols=205 Identities=26% Similarity=0.376 Sum_probs=160.0
Q ss_pred CCCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccc--
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVY-- 882 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~-- 882 (1042)
...||||+||+..|++.|+. .+..+|++++++.++|. .|+.++...+.++.++|+.+...........
T Consensus 102 ~~~QQDA~EFl~~LLd~L~~--------~i~~~F~g~~~~~~~C~--~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~ 171 (332)
T cd02671 102 GYLQHDAQEVLQCILGNIQE--------LVEKDFQGQLVLRTRCL--ECETFTERREDFQDISVPVQESELSKSEESSEI 171 (332)
T ss_pred CccccCHHHHHHHHHHHHHH--------HHHhhhceEEEEEEEeC--CCCCeeceecccEEEEEEeCCCccccccccccc
Confidence 45899999999999999983 57889999999999997 6778888888888888887654211000000
Q ss_pred cCC---cceecccccccc------chhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCc-----cCccccccce
Q 001625 883 QSD---SQLVAGNCESEE------SKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDA-----RGRLSKLNGH 948 (1042)
Q Consensus 883 ~~~---n~~~~~~~~~~~------~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~-----~g~~~Ki~~~ 948 (1042)
..+ .......|...+ ....+|.|++|+.++.|+|+..|.++|+||+|||+||.++. .+...|++++
T Consensus 172 ~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~ 251 (332)
T cd02671 172 SPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTP 251 (332)
T ss_pred ccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCcc
Confidence 000 000111121111 11245899999999999999999999999999999999763 2456899999
Q ss_pred eecccccccCCCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechh
Q 001625 949 VNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLE 1027 (1042)
Q Consensus 949 V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ 1027 (1042)
|.||..|+|.+++.. .....|+|+|||+|.| ++++|||+|||| ||+|||+.|+.++++
T Consensus 252 v~fp~~L~~~~~~~~----~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----------------W~~fdD~~V~~~~~~ 310 (332)
T cd02671 252 LLTPLKLSLEEWSTK----PKNDVYRLFAVVMHSGATISSGHYTAYVR-----------------WLLFDDSEVKVTEEK 310 (332)
T ss_pred ccCccccccccccCC----CCCCeEEEEEEEEEcCCCCCCCeEEEEEE-----------------EEEEcCcceEEccHH
Confidence 999999999887643 3467899999999999 689999999998 999999999999988
Q ss_pred hhcC---------CCcEEEEEE
Q 001625 1028 EVLR---------CEAYILFYE 1040 (1042)
Q Consensus 1028 ev~~---------~~aYiLfYe 1040 (1042)
++.. .+||||||+
T Consensus 311 ~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 311 DFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred HHHhhcCCCCCCCCceEEEEEC
Confidence 8763 369999995
No 45
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.76 E-value=0.0022 Score=78.55 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=101.7
Q ss_pred cccccccCCCcchhHHHHHHHhcCHHHHHHHhcccCCC-ChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCC--
Q 001625 228 VVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTF-GPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQ-- 304 (1042)
Q Consensus 228 ~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~-~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~-- 304 (1042)
.+.||.--+-.=|.||+||.|..+|++|..+++..... .+|.+.|.-||..|..+.+ .......|+.+++...-.
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~e~CL~CELGFLF~Ml~~S~G--~~Cqa~NFlraf~t~~~a~~ 575 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTKEFCLLCELGFLFTMLDSSTG--DPCQANNFLRAFRTNPEASA 575 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccchhHHHHHHHHHHHHHHhhhcC--CccchhHHHHHHhhChHhhh
Confidence 56787777777899999999999999999999886554 7999999999999987764 356666777776542210
Q ss_pred ----CCC----------CCCCCHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCCCCCCCcccccccceEEEEEEEEEeCCC
Q 001625 305 ----FKG----------YQQHDSHELLRCLLDGLCSEELAFRKRNS-PSEGNGISSNQGPVFVDYVFGGQIASTVRCVEC 369 (1042)
Q Consensus 305 ----F~~----------~~QQDAhEFL~~LLd~L~~e~~~~~k~~~-~~~~~~~~~~~~~siI~~iF~G~l~s~v~C~~C 369 (1042)
+.. .--|||.-|.....+.. ..+...+.... .........-....++.+.|+-.++....|..|
T Consensus 576 LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~-~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C 654 (1118)
T KOG1275|consen 576 LGLVLSDTQISGTVNDDVLIQDAEGFISSETSRH-LDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRCGEC 654 (1118)
T ss_pred hcccccchhhccccchHHHhhhhhhccchhhhhh-hhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhcccc
Confidence 100 01233333322222211 11111000000 000111111223467889999999999999999
Q ss_pred CCEEEEEeeeeeEEeecCCC
Q 001625 370 GHSSTVYEPFLDLSLPVPTK 389 (1042)
Q Consensus 370 ~~~S~~~EpF~dLSL~Ip~~ 389 (1042)
+..+.+.-..+-+.|..|+.
T Consensus 655 ~~~~~~~k~l~~~~lsyp~~ 674 (1118)
T KOG1275|consen 655 GDEKQKSKSLLRKVLSYPNV 674 (1118)
T ss_pred cchhhhhhhhhheeecCCCc
Confidence 99988777778888888764
No 46
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0014 Score=75.58 Aligned_cols=221 Identities=20% Similarity=0.239 Sum_probs=170.7
Q ss_pred cCCCCCCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccc
Q 001625 801 SGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEK 880 (1042)
Q Consensus 801 ~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e 880 (1042)
..-+.++||||+||+.+|+..|+..+.....+.|..+|.|++..+++|. .|..++++++.++.+.+....- +....
T Consensus 387 ~eFg~~~QQDA~EFLlfLL~kirk~~~S~~~~~It~lf~Fe~e~rlsC~--~C~~v~ySye~~~~i~i~le~n--~E~~d 462 (749)
T COG5207 387 PEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCS--GCMDVSYSYESMLMICIFLEGN--DEPQD 462 (749)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccchhcCCCcchhhhhhhcceeccc--ccccccccccceEEEEeecccC--cchhh
Confidence 3445568999999999999999998888888999999999999999997 8999999999998888874321 00111
Q ss_pred cccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecc--cccccC
Q 001625 881 VYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFS--EIINLR 958 (1042)
Q Consensus 881 ~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP--~~LdL~ 958 (1042)
..+...-+ .+...-+|.|+.|+.+..|+|...|.+||++|||+..||.+. ++...|+..++... ..++++
T Consensus 463 i~~~v~a~-------f~pdtiE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq-ny~v~kls~pi~~~~D~m~~~~ 534 (749)
T COG5207 463 IRKSVEAF-------FLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ-NYKVEKLSDPIEMRSDDMIKLG 534 (749)
T ss_pred HHHHHHhe-------ECccceeeehhhhcCcccccccchhhccCceeEEecceeecc-ceeehhccCceEEccccccchh
Confidence 11111111 112234799999999999999999999999999999999874 44466777776654 467777
Q ss_pred CCCCCCCC------------------------------------------------------------------------
Q 001625 959 PYMDPGCT------------------------------------------------------------------------ 966 (1042)
Q Consensus 959 ~~~~~~~~------------------------------------------------------------------------ 966 (1042)
.||.....
T Consensus 535 s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vP 614 (749)
T COG5207 535 SFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVP 614 (749)
T ss_pred hHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCC
Confidence 77643110
Q ss_pred -------------------------------------------------------------------CCCCcceEEEEEE
Q 001625 967 -------------------------------------------------------------------DHDNYDYRLVGVV 979 (1042)
Q Consensus 967 -------------------------------------------------------------------~~~~~~Y~L~aVI 979 (1042)
-.+..-|.|.|||
T Consensus 615 KkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI 694 (749)
T COG5207 615 KKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVI 694 (749)
T ss_pred cccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEE
Confidence 0012349999999
Q ss_pred EEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEEEC
Q 001625 980 EHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 980 ~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYeRi 1042 (1042)
+|.| ++++||||+|||.... ..-+|+.|||+.+..++.-+++..+.||.||+|.
T Consensus 695 ~HkG~s~haGHYv~fIrk~~~---------~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 695 CHKGDSIHAGHYVWFIRKNGK---------DKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred eccCCcccccceEEEEecccC---------cceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 9999 8999999999995432 4567999999999999988899999999999984
No 47
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0022 Score=78.09 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=162.2
Q ss_pred CCccHHHHHhhhhhhcCccCCcc---------------------------------cCCccccccceeeEEEeeeccCCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQR---------------------------------EKGKMKINDAVEMQSRSSCLRDSC 853 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~---------------------------------~~~~i~~~f~~~~~s~~~C~~~~c 853 (1042)
+||||+||+..+++.+++.+... ....+..+|.+.+....+|. .|
T Consensus 321 ~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~et~Cl--sc 398 (587)
T KOG1864|consen 321 MQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTNETRCL--SC 398 (587)
T ss_pred hhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeeeeeeec--cc
Confidence 69999999999999988855211 12356678999999999998 88
Q ss_pred cccccccccceeeeccCCCCCC---------CcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCC
Q 001625 854 SQESITDQDEGSCSVDGATSSG---------YSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAP 924 (1042)
Q Consensus 854 ~~es~~~~~~l~~~l~~~~~~~---------~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP 924 (1042)
...+..++.++.+.++.+.... +..++.+.++ .+|+|++|...++|.|++.|.++|
T Consensus 399 ~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~---------------nky~c~~c~s~qeae~~l~~k~lp 463 (587)
T KOG1864|consen 399 ETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGE---------------NKYSCENCCSLQEAERRLKIKKLP 463 (587)
T ss_pred cccccccccccccceeccccccccHHHHHHHhcchhhccCC---------------CcccccccCchhhHHHhccccCCc
Confidence 9999999999999998763211 2222333332 456999999999999999999999
Q ss_pred CeEEEEEeccccC-ccCccccccceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCcc
Q 001625 925 PILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKV 1002 (1042)
Q Consensus 925 ~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~ 1002 (1042)
.+|+||||||.|+ ...+..|+...|.||..|.+..-...+. .....|.|+|||+|.| +++.|||+||+|..
T Consensus 464 ~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~--~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~----- 536 (587)
T KOG1864|consen 464 YVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDN--NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL----- 536 (587)
T ss_pred ceeeeehhccccccccccccccccccccccceeecccccccc--CccceeeEEEEEEeccCCCCCcceEEEEeeC-----
Confidence 9999999999998 4455679999999998888865544322 1247899999999999 89999999999954
Q ss_pred ccccccCCCeEEEEcCceeeeechhhhcCC---CcEEEEEEE
Q 001625 1003 KAKKESVGGVWYHASDVYVREVSLEEVLRC---EAYILFYEK 1041 (1042)
Q Consensus 1003 ~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~---~aYiLfYeR 1041 (1042)
.-.|+.|||..|+.++.+.|... .+|++||..
T Consensus 537 -------~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 537 -------DFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred -------CCCceecccccccccCcchhhhccCCCccceeeeE
Confidence 22299999999999999999865 477777754
No 48
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.41 E-value=0.0035 Score=70.13 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGA 871 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~ 871 (1042)
.||||+||+..|++.|+ ..+..+|++++.++++|. .|+..+...+.++.+.++.+
T Consensus 50 ~QqDA~Efl~~lld~l~--------~~i~~~F~G~~~~~i~C~--~C~~~s~~~E~f~~L~Lp~~ 104 (279)
T cd02667 50 QQQDSHELLRYLLDGLR--------TFIDSIFGGELTSTIMCE--SCGTVSLVYEPFLDLSLPRS 104 (279)
T ss_pred chhhHHHHHHHHHHHHH--------HhhhhhcceEEEEEEEcC--CCCCEeCccccceEEecCCC
Confidence 59999999999999998 467889999999999997 78888888888888888754
No 49
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.37 E-value=0.0033 Score=71.83 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=167.6
Q ss_pred CCCccHHHHHhhhhhhcCccCCc----ccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCccccc
Q 001625 806 CFNQDCAEVESGLTNDVNPAVPQ----REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKV 881 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~~~----~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~ 881 (1042)
..||||+||+..|++.|+..+.. .....+..+|+++...++.|. .|+.++...+.++.+.++.+... +..+.
T Consensus 86 ~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~--~C~~~s~~~e~f~~l~l~i~~~~--sl~~~ 161 (324)
T cd02668 86 GQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCS--KCGRESSLPSKFYELELQLKGHK--TLEEC 161 (324)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeC--CCCCccccccccEEEEEEecccC--CHHHH
Confidence 36999999999999999987753 244678899999999999997 67877777788888877765311 11100
Q ss_pred ccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeecccccccCCC
Q 001625 882 YQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLRPY 960 (1042)
Q Consensus 882 ~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~~~ 960 (1042)
...+...+ ..+...+|.|++|++++.+.|+..|.+||+||+|||+||.|+ ..+...|++.+|.||..|||.+|
T Consensus 162 ---L~~~~~~e---~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~ 235 (324)
T cd02668 162 ---IDEFLKEE---QLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEY 235 (324)
T ss_pred ---HHHhhCce---ecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhh
Confidence 01111110 111124589999999999999999999999999999999998 45667899999999999999999
Q ss_pred CCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhc---------
Q 001625 961 MDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVL--------- 1030 (1042)
Q Consensus 961 ~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~--------- 1030 (1042)
+.... .....|+|+|||+|.| ++++|||+||+|.. .+++||+|||+.|++++.+.+.
T Consensus 236 ~~~~~--~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~-----------~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~ 302 (324)
T cd02668 236 LAESD--EGSYVYELSGVLIHQGVSAYSGHYIAHIKDE-----------QTGEWYKFNDEDVEEMPGKPLKLGNSEDPAK 302 (324)
T ss_pred ccccc--CCCcEEEEEEEEEEcCCCCCCEeeEEEEECC-----------CCCcEEEEECCceEEcCHHHhhccccccccc
Confidence 86532 3467899999999999 58999999999964 3579999999999999888772
Q ss_pred ------------CCCcEEEEEE
Q 001625 1031 ------------RCEAYILFYE 1040 (1042)
Q Consensus 1031 ------------~~~aYiLfYe 1040 (1042)
+.+||||||+
T Consensus 303 ~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 303 PRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccCCCccccCceEEEEeC
Confidence 2359999996
No 50
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.30 E-value=0.0038 Score=70.53 Aligned_cols=207 Identities=24% Similarity=0.325 Sum_probs=165.5
Q ss_pred CCCCCccHHHHHhhhhhhcCccCCc--ccCCccccccceeeEEEeeeccCCCc-ccccccccceeeeccCCCCCC-Cccc
Q 001625 804 TDCFNQDCAEVESGLTNDVNPAVPQ--REKGKMKINDAVEMQSRSSCLRDSCS-QESITDQDEGSCSVDGATSSG-YSAE 879 (1042)
Q Consensus 804 ~~~~~QDa~Ef~~~l~~~l~~~~~~--~~~~~i~~~f~~~~~s~~~C~~~~c~-~es~~~~~~l~~~l~~~~~~~-~~~~ 879 (1042)
+..+||||+||+..|++.|++.+.. .....+..+|++.+.+.+.|. .|+ .++...+.+..++++.+.... ....
T Consensus 86 ~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~--~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~ 163 (305)
T cd02657 86 GGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCT--ESPDEEEVSTESEYKLQCHISITTEVNYLQ 163 (305)
T ss_pred CCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcC--CCCCCCccccccceEEEeecCCCcccccHH
Confidence 4457999999999999999998763 356789999999999999997 666 566666666666666543210 0000
Q ss_pred ccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCcc-CccccccceeecccccccC
Q 001625 880 KVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDAR-GRLSKLNGHVNFSEIINLR 958 (1042)
Q Consensus 880 e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~-g~~~Ki~~~V~fP~~LdL~ 958 (1042)
+. ....+++.....|++|++...++|+..|.+||++|+|||+||.|+.. +...|+..+|.||..|||.
T Consensus 164 ~~-----------L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~ 232 (305)
T cd02657 164 DG-----------LKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLY 232 (305)
T ss_pred HH-----------HHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecc
Confidence 00 00111122234799999999999999999999999999999999844 5677999999999999999
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcC------
Q 001625 959 PYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLR------ 1031 (1042)
Q Consensus 959 ~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~------ 1031 (1042)
+|+. ....|+|+|||+|.| ++++|||+||+|.+ .++.||.|||+.|+++++++|+.
T Consensus 233 ~~~~------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~-----------~~~~W~~fdD~~V~~~~~~~v~~~~~~~~ 295 (305)
T cd02657 233 ELCT------PSGYYELVAVITHQGRSADSGHYVAWVRRK-----------NDGKWIKFDDDKVSEVTEEDILKLSGGGD 295 (305)
T ss_pred cccC------CCCcEEEEEEEEecCCCCCCcEEEEEEEcC-----------CCCeEEEEECCceEEeCHHHHHhhcCCCC
Confidence 9986 346899999999999 69999999999965 24899999999999999999985
Q ss_pred -CCcEEEEEE
Q 001625 1032 -CEAYILFYE 1040 (1042)
Q Consensus 1032 -~~aYiLfYe 1040 (1042)
..||||||+
T Consensus 296 ~~~aYiL~Y~ 305 (305)
T cd02657 296 WHIAYILLYK 305 (305)
T ss_pred CceEEEEEEC
Confidence 479999996
No 51
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.29 E-value=0.0033 Score=69.10 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=49.5
Q ss_pred CCCCccHHHHHhhhhhhcCccCCcc-------cC----CccccccceeeEEEeeeccCCCcccccccccceeeeccCCC
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQR-------EK----GKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGAT 872 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~-------~~----~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~ 872 (1042)
...||||||||..|++.|++.+... .. .....+|++.+++.++|. .|+.++...+.++.+.|+.+.
T Consensus 30 ~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~--~C~~~s~~~e~~~~L~L~i~~ 106 (245)
T cd02673 30 NDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCI--GCSFEENVSDVGNFLDVSMID 106 (245)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEec--CCCCeeeeccccceecccccc
Confidence 3479999999999999998744211 01 123467999999999997 778888877877778777654
No 52
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.22 E-value=0.0035 Score=71.87 Aligned_cols=213 Identities=23% Similarity=0.337 Sum_probs=164.4
Q ss_pred CCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccCCc
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDS 886 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~n 886 (1042)
.||||+||+..|++.|+ ..+..+|++++.+.++|. .|+.++...+.+..+.|..+. .. ...+
T Consensus 80 ~QqDa~EFl~~lLd~l~--------~~i~~~F~G~~~~~i~C~--~C~~~s~~~e~f~~l~L~i~s-----l~---~~l~ 141 (327)
T cd02664 80 SQQDCSEYLRYLLDRLH--------TLIEKMFGGKLSTTIRCL--NCNSTSARTERFRDLDLSFPS-----VQ---DLLN 141 (327)
T ss_pred CcCCHHHHHHHHHHHHH--------HHHHhhCcEEeEeEEEcC--CCCCEecccccceeeecCCCC-----HH---HHHH
Confidence 69999999999999999 478899999999999996 677777777777777776551 10 1111
Q ss_pred ceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCc-cCccccccceeecccccccCCCCCCCC
Q 001625 887 QLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDA-RGRLSKLNGHVNFSEIINLRPYMDPGC 965 (1042)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~-~g~~~Ki~~~V~fP~~LdL~~~~~~~~ 965 (1042)
.+...+.. +...+|+|++|++++.++|+..|.+||+||+|||+||.|+. .+...|+..+|.||..|||..++....
T Consensus 142 ~~~~~E~l---~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~ 218 (327)
T cd02664 142 YFLSPEKL---TGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKS 218 (327)
T ss_pred HhcCeeEc---cCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccc
Confidence 11111111 11235899999999999999999999999999999999984 456689999999999999998874210
Q ss_pred -----------------CCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCC---------CccccccccCCCeEEEEcC
Q 001625 966 -----------------TDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPK---------NKVKAKKESVGGVWYHASD 1018 (1042)
Q Consensus 966 -----------------~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~---------~~~~~~~~~~~~~W~~fnD 1018 (1042)
.......|+|+|||+|.| ++++|||+||+|.+.. ......+....+.||+|||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD 298 (327)
T cd02664 219 SESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFND 298 (327)
T ss_pred cccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeC
Confidence 112457899999999999 5899999999997531 0011112234578999999
Q ss_pred ceeeeechhhhcC-------CCcEEEEEE
Q 001625 1019 VYVREVSLEEVLR-------CEAYILFYE 1040 (1042)
Q Consensus 1019 ~~V~~vs~~ev~~-------~~aYiLfYe 1040 (1042)
+.|++++.++|.+ .+||||||+
T Consensus 299 ~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 299 SRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999999986 689999996
No 53
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.07 E-value=0.0053 Score=69.59 Aligned_cols=211 Identities=21% Similarity=0.230 Sum_probs=160.9
Q ss_pred CCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccCC
Q 001625 806 CFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSD 885 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~ 885 (1042)
..||||+||+..|++.|++.+.......+..+|+++..+.++|. .|+..+...+.+..++++.+........+.....
T Consensus 98 ~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~f~~~~~~~i~C~--~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~ 175 (311)
T cd02658 98 MRQQDALEFLLHLIDKLDRESFKNLGLNPNDLFKFMIEDRLECL--SCKKVKYTSELSEILSLPVPKDEATEKEEGELVY 175 (311)
T ss_pred cccccHHHHHHHHHHHHHHhhcccccCCchhheEEEeeEEEEcC--CCCCEEEeecceeEEeeecccccccccccccccC
Confidence 37999999999999999998865555678899999999999997 6676666666666666655433211000000000
Q ss_pred cceeccccccc--cchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCC
Q 001625 886 SQLVAGNCESE--ESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDP 963 (1042)
Q Consensus 886 n~~~~~~~~~~--~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~ 963 (1042)
.......|... ..+.-+++|++|++++.++|+..|.+||+||+|||+||.|+..+...|+...|.||..|
T Consensus 176 ~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l-------- 247 (311)
T cd02658 176 EPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL-------- 247 (311)
T ss_pred CCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC--------
Confidence 00111111111 11223468999999999999999999999999999999997666678999999999766
Q ss_pred CCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEE
Q 001625 964 GCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 964 ~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYe 1040 (1042)
....|+|+|||+|.| ++++|||++|+|.+.. .+++||.|||+.|++++..++...+||||||+
T Consensus 248 -----~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~---------~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 248 -----GPGKYELIAFISHKGTSVHSGHYVAHIKKEID---------GEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred -----CCCcEEEEEEEEccCCCCCCcceEEEEeCCCC---------CCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 235799999999999 5999999999996411 35889999999999999999999999999996
No 54
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.02 E-value=0.005 Score=67.35 Aligned_cols=39 Identities=26% Similarity=0.557 Sum_probs=35.3
Q ss_pred ccccCCC-cchhHHHHHHHhcCHHHHHHHhcccCCCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCCCCC
Q 001625 231 GLANLGN-TCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFKGYQ 309 (1042)
Q Consensus 231 GL~NlGN-TCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~~~~ 309 (1042)
|+.|.+| +|||-|.|=++|. +
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------~ 22 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------E 22 (241)
T ss_pred CCccccCceeehHHHHHHHHH----------------------------------------------------------H
Confidence 7899999 9999999988877 8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 001625 310 QHDSHELLRCLLDGLCSE 327 (1042)
Q Consensus 310 QQDAhEFL~~LLd~L~~e 327 (1042)
|||+.|||.+|++.|..-
T Consensus 23 q~D~~e~~~~l~~~~~~~ 40 (241)
T cd02670 23 QQDPEEFFNFITDKLLMP 40 (241)
T ss_pred hcCHHHHHHHHHHHHhhh
Confidence 999999999999998653
No 55
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.01 E-value=0.0045 Score=67.15 Aligned_cols=61 Identities=13% Similarity=-0.026 Sum_probs=45.7
Q ss_pred CCccHHHHHhhhhhhcCccCCcc---------cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQR---------EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGA 871 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~---------~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~ 871 (1042)
+||||+||++.|++.|++.+... ..+.|..+|++.+.+...| |+..+...+.|+.+.++..
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~----~~~~s~~~E~F~~L~l~i~ 90 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL----EGKPFCNCETFGQYPLQVN 90 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE----CCCcccccCccEEEEEEEC
Confidence 69999999999999999988633 3457999999999876665 3444555666666666543
No 56
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=95.90 E-value=0.023 Score=61.31 Aligned_cols=82 Identities=20% Similarity=0.485 Sum_probs=58.1
Q ss_pred cccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCCCCCCCCCCcceEEEEEEEEeC
Q 001625 904 NSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG 983 (1042)
Q Consensus 904 ~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G 983 (1042)
-|.+|+.+ ...|++.+.++|+|+++|+. .|-..+ ||..|.. .-.+..|++.+||-..-
T Consensus 172 pCn~C~~k-sQ~rkMvlekv~~vfmLHFV------eGLP~n-----------dl~~ysF----~feg~~Y~Vt~VIQY~~ 229 (275)
T PF15499_consen 172 PCNSCNSK-SQRRKMVLEKVPPVFMLHFV------EGLPHN-----------DLQHYSF----HFEGCLYQVTSVIQYQA 229 (275)
T ss_pred CCcccCCh-HHhHhhhhhcCchhhhhhhh------ccCCcc-----------CCCccce----eecCeeEEEEEEEEEec
Confidence 58888864 45678899999999999954 232222 2222211 02356799999998874
Q ss_pred ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCcee
Q 001625 984 TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYV 1021 (1042)
Q Consensus 984 s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V 1021 (1042)
+--|+++|++++ +|.|..+||-+=
T Consensus 230 --~~~HFvtWi~~~------------dGsWLecDDLkg 253 (275)
T PF15499_consen 230 --NLNHFVTWIRDS------------DGSWLECDDLKG 253 (275)
T ss_pred --cCceeEEEEEcC------------CCCeEeeccCCC
Confidence 468999999975 677999999653
No 57
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.73 E-value=0.0077 Score=65.93 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=44.1
Q ss_pred CCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCccccc-ccccceeeeccCCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESI-TDQDEGSCSVDGAT 872 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~-~~~~~l~~~l~~~~ 872 (1042)
.||||+||+..|++.|+ ..+..+|.+...+.+.|. .|+..+. ..+.+..++++.+.
T Consensus 33 ~QqDa~EFl~~ll~~l~--------~~i~~~F~g~~~~~i~C~--~C~~~s~~~~e~f~~LsL~ip~ 89 (240)
T cd02662 33 EQQDAHELFQVLLETLE--------QLLKFPFDGLLASRIVCL--QCGESSKVRYESFTMLSLPVPN 89 (240)
T ss_pred hhcCHHHHHHHHHHHHH--------HhccCccccEEEEEEEeC--CCCCccCcceeeeeeeEecccc
Confidence 79999999999999999 357789999999999997 6665544 35666666666554
No 58
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.68 E-value=0.01 Score=70.80 Aligned_cols=218 Identities=21% Similarity=0.212 Sum_probs=173.2
Q ss_pred CCCCccHHHHHhhhhhhcCccCCc---ccCCccccccceeeEEEeeeccC------------CCc-ccccccccceeeec
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQ---REKGKMKINDAVEMQSRSSCLRD------------SCS-QESITDQDEGSCSV 868 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~---~~~~~i~~~f~~~~~s~~~C~~~------------~c~-~es~~~~~~l~~~l 868 (1042)
.-.||||+|||..|++.|++.+.. ....++..+|+|++++.+.|..+ .|. .++...++++.+++
T Consensus 204 ~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsL 283 (440)
T cd02669 204 ITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTL 283 (440)
T ss_pred CcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEe
Confidence 458999999999999999998763 35678999999999999988643 233 34555667777777
Q ss_pred cCCCCCCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccce
Q 001625 869 DGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGH 948 (1042)
Q Consensus 869 ~~~~~~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~ 948 (1042)
+.+....+..........++ .+.+-.++|.|+.|...+.++|+..|.+||+||+||||||.++. +...||.+.
T Consensus 284 dip~~~~~~~~~~~~~l~~~------~l~e~L~ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~-~~~~K~~t~ 356 (440)
T cd02669 284 DLPPPPLFKDGNEENIIPQV------PLKQLLKKYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN-FFKEKNPTI 356 (440)
T ss_pred cCCCCccccccccccccCcc------cHHHHHHhcCCccceecccceEEEEEeeCCcEEEEEEecccCCC-CccccCCCE
Confidence 76543221111101111122 23444578999999999999999999999999999999999975 456899999
Q ss_pred eecccc-cccCCCCCCCCC-CCCCcceEEEEEEEEeCcc-CCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeec
Q 001625 949 VNFSEI-INLRPYMDPGCT-DHDNYDYRLVGVVEHLGTM-RGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVS 1025 (1042)
Q Consensus 949 V~fP~~-LdL~~~~~~~~~-~~~~~~Y~L~aVI~H~Gs~-~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs 1025 (1042)
|.||.. |||.+|+..... ......|+|+|||+|.|++ ++|||+||+|+. .+++||+|||+.|++++
T Consensus 357 V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~-----------~~~~W~~fdD~~V~~v~ 425 (440)
T cd02669 357 VNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHK-----------STNKWFEIQDLNVKEVL 425 (440)
T ss_pred EECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcC-----------CCCeEEEEECCeeeEcC
Confidence 999985 899999964322 2456889999999999976 999999999964 36899999999999999
Q ss_pred hhhhcCCCcEEEEEE
Q 001625 1026 LEEVLRCEAYILFYE 1040 (1042)
Q Consensus 1026 ~~ev~~~~aYiLfYe 1040 (1042)
+++|+..+||||||+
T Consensus 426 ~~~v~~~eaYll~Y~ 440 (440)
T cd02669 426 PQLIFLSESYIQIWE 440 (440)
T ss_pred HHHhccCCceEEEeC
Confidence 999999999999996
No 59
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.61 E-value=0.0092 Score=68.07 Aligned_cols=222 Identities=28% Similarity=0.406 Sum_probs=172.3
Q ss_pred CCCCccHHHHHhhhhhhcCccCCcc---------cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCC
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQR---------EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSG 875 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~---------~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~ 875 (1042)
...||||+||+..|++.|++.+... ...++..+|++.+.+.+.|. .|+..+...+.++.++++.+....
T Consensus 85 ~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~--~C~~~s~~~e~f~~lsl~i~~~~~ 162 (328)
T cd02660 85 GYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQ--RCGGVSTTVDPFLDLSLDIPNKST 162 (328)
T ss_pred ccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcC--CCCCccceecccceeeeecccccc
Confidence 3479999999999999999876443 13478999999999999996 677777777777777777765432
Q ss_pred Cccc-ccccCCcceecccccccc---chhh--hhcccccccccceEEEEEeccCCCeEEEEEeccccCccCcccccccee
Q 001625 876 YSAE-KVYQSDSQLVAGNCESEE---SKVE--EINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHV 949 (1042)
Q Consensus 876 ~~~~-e~~~~~n~~~~~~~~~~~---~~~~--~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V 949 (1042)
.... +............|.... +.++ .|+|++|+.++.+.|+..|.+||++|+|||+||.|+..+...|+..+|
T Consensus 163 ~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v 242 (328)
T cd02660 163 PSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYV 242 (328)
T ss_pred ccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEE
Confidence 1100 000000111111221110 1111 268999999999999999999999999999999998656678999999
Q ss_pred ecccccccCCCCCCC-------CCCCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceee
Q 001625 950 NFSEIINLRPYMDPG-------CTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVR 1022 (1042)
Q Consensus 950 ~fP~~LdL~~~~~~~-------~~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~ 1022 (1042)
.||..|||.+|+... ........|+|+|||+|.|+.++|||++|+|.. +++||+|||+.|+
T Consensus 243 ~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~------------~~~W~~~nD~~V~ 310 (328)
T cd02660 243 QFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG------------DGQWFKFDDAMIT 310 (328)
T ss_pred eCCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC------------CCcEEEEECCeeE
Confidence 999999999998752 123456889999999999988999999999953 3899999999999
Q ss_pred eechhhhcCCCcEEEEEE
Q 001625 1023 EVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 1023 ~vs~~ev~~~~aYiLfYe 1040 (1042)
+++.++|+..+||||||.
T Consensus 311 ~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 311 RVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred ECCHHHhcCCCcEEEEeC
Confidence 999999999999999994
No 60
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0062 Score=71.87 Aligned_cols=203 Identities=30% Similarity=0.489 Sum_probs=173.0
Q ss_pred CCCCccHHHHHhhhhhhcCccC----Cc-----ccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCC-
Q 001625 805 DCFNQDCAEVESGLTNDVNPAV----PQ-----REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSS- 874 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~----~~-----~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~- 874 (1042)
-+.|.||||||..+++.++..- .. .+...+..+||+-+.+.++|. .|..++.+++..+.+.+......
T Consensus 190 ~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~--~C~~vS~tyE~~~dltvei~d~~s 267 (545)
T KOG1865|consen 190 RGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCL--HCKGVSDTYEPYLDLTLEIQDASS 267 (545)
T ss_pred CCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecc--cCCCcccccccccceEEEeccchh
Confidence 3479999999999999998855 11 266789999999999999997 78888888888888877765221
Q ss_pred ------CCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccce
Q 001625 875 ------GYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGH 948 (1042)
Q Consensus 875 ------~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~ 948 (1042)
.+...|.++++ ..|.|.+|+.+..|.|++.|.++|+||+||||||.+ ++..||+.+
T Consensus 268 l~~AL~qFt~~E~L~ge---------------n~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~ 329 (545)
T KOG1865|consen 268 LQQALEQFTKPEKLDGE---------------NAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKP 329 (545)
T ss_pred HHHHHHHhhhHHhhCCc---------------cccccchhhhhCcccceeeeecCCceEEEeeehhcc---Ccccccccc
Confidence 13333444443 446999999999999999999999999999999986 555799999
Q ss_pred eecccccccCCCCCCCCCCCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechh
Q 001625 949 VNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLE 1027 (1042)
Q Consensus 949 V~fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ 1027 (1042)
|.||+.|||.|||.. .......|.|||||+|.| ...+|||+||||.. .+.||.|||+.|+.++.+
T Consensus 330 I~fPE~LDl~PyMS~--~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~------------~g~Wy~~DDS~V~~~~~~ 395 (545)
T KOG1865|consen 330 VSFPETLDLQPYMSQ--PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ------------NGQWYKMDDSEVTQSSIE 395 (545)
T ss_pred cCCcccccccccccC--CCCCCceEEEEEEEEeccccccCCceEEEEEcC------------CCceEEccCceeeecccc
Confidence 999999999999984 334678999999999999 89999999999964 679999999999999999
Q ss_pred hhcCCCcEEEEEEE
Q 001625 1028 EVLRCEAYILFYEK 1041 (1042)
Q Consensus 1028 ev~~~~aYiLfYeR 1041 (1042)
.|++..||||||.|
T Consensus 396 ~VLsq~AYmLfY~R 409 (545)
T KOG1865|consen 396 SVLSQQAYILFYAR 409 (545)
T ss_pred ceecccceEEEEEe
Confidence 99999999999998
No 61
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.41 E-value=0.016 Score=66.28 Aligned_cols=217 Identities=27% Similarity=0.406 Sum_probs=173.0
Q ss_pred CCCCccHHHHHhhhhhhcCccCCc-ccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCccccccc
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQ-REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQ 883 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~-~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~ 883 (1042)
...||||+||+..|++.|+..+.. .....+..+|++.....+.|. .|+..+...+.++.+.++.+.... ..+
T Consensus 83 ~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~--~C~~~s~~~e~f~~l~l~i~~~~~--l~~--- 155 (334)
T cd02659 83 TFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICK--ECPHESEREEYFLDLQVAVKGKKN--LEE--- 155 (334)
T ss_pred cccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEec--CCCceecccccceEEEEEcCCCCC--HHH---
Confidence 347999999999999999988764 345679999999999999997 567777777888888887664211 100
Q ss_pred CCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeecccccccCCCCC
Q 001625 884 SDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLRPYMD 962 (1042)
Q Consensus 884 ~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~~~~~ 962 (1042)
+...+.... ..+....|.|++|++++.+.|+..|.++|++|+|||+||.|+ ..+...|+..+|.||..|||.+|+.
T Consensus 156 ~l~~~~~~e---~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~ 232 (334)
T cd02659 156 SLDAYVQGE---TLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTE 232 (334)
T ss_pred HHHHhcCee---EecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccc
Confidence 001111111 112234589999999999999999999999999999999998 4466789999999999999999987
Q ss_pred CCC---------CCCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhc---
Q 001625 963 PGC---------TDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVL--- 1030 (1042)
Q Consensus 963 ~~~---------~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~--- 1030 (1042)
... .......|+|+|||+|.|+.++|||++|+|.. .++.||+|||+.|++++.++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~-----------~~~~W~~~nD~~V~~i~~~~v~~~~ 301 (334)
T cd02659 233 KGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDR-----------DDGKWYKFNDDVVTPFDPNDAEEEC 301 (334)
T ss_pred cccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECC-----------CCCceEEEeCcccEECCHHHHHHHc
Confidence 643 23456789999999999998999999999964 3688999999999999999995
Q ss_pred -------------------CCCcEEEEEEEC
Q 001625 1031 -------------------RCEAYILFYEKI 1042 (1042)
Q Consensus 1031 -------------------~~~aYiLfYeRi 1042 (1042)
...||||||+|.
T Consensus 302 ~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~ 332 (334)
T cd02659 302 FGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332 (334)
T ss_pred CCCccccccccccccccccccceEEEEEEEe
Confidence 235999999984
No 62
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.33 E-value=0.014 Score=67.27 Aligned_cols=200 Identities=18% Similarity=0.132 Sum_probs=135.4
Q ss_pred CCccHHHHHhhhhhhcCccCCccc--------------CCccccccceeeEEEeeeccCC-CcccccccccceeeeccCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQRE--------------KGKMKINDAVEMQSRSSCLRDS-CSQESITDQDEGSCSVDGA 871 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~--------------~~~i~~~f~~~~~s~~~C~~~~-c~~es~~~~~~l~~~l~~~ 871 (1042)
.||||+|||..|++.|+..+.... ...+..+|+|++++.+.|..+. -..++...+.|+.+.+...
T Consensus 97 ~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~ 176 (343)
T cd02666 97 RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVG 176 (343)
T ss_pred cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecC
Confidence 899999999999999999886543 3479999999999999986433 1355556666666666544
Q ss_pred CCCCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeec
Q 001625 872 TSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNF 951 (1042)
Q Consensus 872 ~~~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~f 951 (1042)
...... ........+.+..+.+. +.-.|.++|+||.|||+ +.+. .....+...+..|
T Consensus 177 ~~~~~~----------~~~~~~~~L~d~L~~~~-----------~~e~~~~~P~vl~~qlq-~~~~-~~~~~~~~dry~~ 233 (343)
T cd02666 177 KKGREI----------VVLLEPKDLYDALDRYF-----------DYDSLTKLPQRSQVQAQ-LAQP-LQRELISMDRYEL 233 (343)
T ss_pred cccccc----------cccCCCCCHHHHHHHhc-----------ChhhhccCCHHHHHHHh-hccc-ccchheeeccccc
Confidence 311000 00000111122222221 11119999999999999 3221 2223456666677
Q ss_pred ccccccCCCCCCCC--------------------------CCCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccc
Q 001625 952 SEIINLRPYMDPGC--------------------------TDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAK 1005 (1042)
Q Consensus 952 P~~LdL~~~~~~~~--------------------------~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~ 1005 (1042)
|...++.++..... .+.....|+|+|||+|.|+.++|||++|+|+.
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~-------- 305 (343)
T cd02666 234 PSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDF-------- 305 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEEC--------
Confidence 76555544432111 02256789999999999988999999999964
Q ss_pred cccCCCeEEEEcCceeeeechhhhcCC------CcEEEEEE
Q 001625 1006 KESVGGVWYHASDVYVREVSLEEVLRC------EAYILFYE 1040 (1042)
Q Consensus 1006 ~~~~~~~W~~fnD~~V~~vs~~ev~~~------~aYiLfYe 1040 (1042)
.++.||+|||..|++++.++++.. +||||||.
T Consensus 306 ---~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 306 ---EENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred ---CCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 358899999999999999999864 69999994
No 63
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.07 E-value=0.023 Score=63.70 Aligned_cols=206 Identities=33% Similarity=0.476 Sum_probs=163.7
Q ss_pred CCccHHHHHhhhhhhcCccCCc------------ccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQ------------REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSS 874 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~------------~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~ 874 (1042)
.||||+||+..|++.|+..... .....+..+|++++.+.+.|. .|+.++...+.+..+.++.+...
T Consensus 85 ~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~--~C~~~s~~~e~~~~l~l~i~~~~ 162 (304)
T cd02661 85 RQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCL--NCKHVSNTYDPFLDLSLDIKGAD 162 (304)
T ss_pred chhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeC--CCCCCcCccccceeeeeecCCCC
Confidence 5899999999999999865321 134578899999999999997 67777777777777777665331
Q ss_pred CCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccc
Q 001625 875 GYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEI 954 (1042)
Q Consensus 875 ~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~ 954 (1042)
... +....+...+ ..+....|+|++|++++.+.|+..|.++|++|+|||+||.++ ...|+...|.||..
T Consensus 163 --~l~---~~l~~~~~~e---~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~---~~~Ki~~~v~f~~~ 231 (304)
T cd02661 163 --SLE---DALEQFTKPE---QLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF---RGGKINKQISFPET 231 (304)
T ss_pred --cHH---HHHHHhcCce---eeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC---CccccCCeEecCCe
Confidence 111 1101111111 112223479999999999999999999999999999999987 34699999999999
Q ss_pred cccCCCCCCCCCCCCCcceEEEEEEEEeCc-cCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCC
Q 001625 955 INLRPYMDPGCTDHDNYDYRLVGVVEHLGT-MRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCE 1033 (1042)
Q Consensus 955 LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs-~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~ 1033 (1042)
|||.+|+... ......|+|+|||+|.|. +++|||++|+|.+ +++||+|||+.|++++.++|+..+
T Consensus 232 L~l~~~~~~~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~------------~~~W~~~nD~~V~~v~~~~v~~~~ 297 (304)
T cd02661 232 LDLSPYMSQP--NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS------------NGKWYNMDDSKVSPVSIETVLSQK 297 (304)
T ss_pred echhhccccC--CCCCceeeEEEEEEECCCCCCCcCCEEEEECC------------CCCEEEEeCCeeEECCHHHhcCCC
Confidence 9999998753 345688999999999995 6999999999963 579999999999999999999999
Q ss_pred cEEEEE
Q 001625 1034 AYILFY 1039 (1042)
Q Consensus 1034 aYiLfY 1039 (1042)
||||||
T Consensus 298 aYil~Y 303 (304)
T cd02661 298 AYILFY 303 (304)
T ss_pred cEEEEe
Confidence 999999
No 64
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=94.73 E-value=0.02 Score=61.67 Aligned_cols=57 Identities=21% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATS 873 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~ 873 (1042)
.||||+||+..|++.|+ ..+..+|+++....++|. .|+.++...+.+..+.++.+..
T Consensus 21 ~QqDa~Ef~~~ll~~l~--------~~i~~~F~~~~~~~~~C~--~C~~~~~~~e~~~~l~l~ip~~ 77 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH--------SIIVDLFQGQLKSRLTCL--TCGKTSTTFEPFTYLSLPIPSG 77 (230)
T ss_pred hhhhHHHHHHHHHHHHh--------hhHHheeCCEEeCcEEcC--CCcCCcceecceeEEEEecccc
Confidence 69999999999999999 468899999999999997 6777777777777777776653
No 65
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.011 Score=70.61 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=119.0
Q ss_pred CCCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccC
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQS 884 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~ 884 (1042)
+.+||||+||+..|++.|++...... ..+.++|.|+.+.+++|. .|.+++++++..+.+.++.+-.+ +....
T Consensus 401 t~~QQDA~EFllfLl~ki~~n~rs~~-~nptd~frF~ve~Rv~C~--~c~kVrYs~~~~~~i~lpv~~~~-----~v~~~ 472 (763)
T KOG0944|consen 401 TNRQQDAQEFLLFLLEKIRENSRSSL-PNPTDLFRFEVEDRVSCL--GCRKVRYSYESEYLIQLPVPMTN-----EVREK 472 (763)
T ss_pred chhhhhHHHHHHHHHHHHhhcccccC-CCHHHHHHhhhhhhhhhh--ccccccccchhheeeEeeccccc-----ccccc
Confidence 33899999999999999998664333 788999999999999997 89999999888888888876432 11111
Q ss_pred Ccceecccccccc--chhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecccccccCCCCC
Q 001625 885 DSQLVAGNCESEE--SKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMD 962 (1042)
Q Consensus 885 ~n~~~~~~~~~~~--~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~~LdL~~~~~ 962 (1042)
+.-..|...+ ..++++||+.|+.+..|+|+.+|..+|+|||||++||.| ..+..+|+...|..|+.|||+.|+.
T Consensus 473 ---v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~-~dw~pkKld~~iempe~ldls~~rs 548 (763)
T KOG0944|consen 473 ---VPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL-QDWVPKKLDVSIEMPEELDLSSYRS 548 (763)
T ss_pred ---CCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEe-cCceeeeeccceecchhhchhhhhh
Confidence 1111222221 135789999999999999999999999999999999999 7888999999999999999988875
Q ss_pred CC
Q 001625 963 PG 964 (1042)
Q Consensus 963 ~~ 964 (1042)
.+
T Consensus 549 ~g 550 (763)
T KOG0944|consen 549 KG 550 (763)
T ss_pred cC
Confidence 44
No 66
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.0065 Score=66.51 Aligned_cols=207 Identities=25% Similarity=0.292 Sum_probs=150.9
Q ss_pred CCccHHHHHhhhhhhcCccCCcc------------------------------------cCCccccccceeeEEEeeecc
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQR------------------------------------EKGKMKINDAVEMQSRSSCLR 850 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~------------------------------------~~~~i~~~f~~~~~s~~~C~~ 850 (1042)
+||||+||++.+++.|++.+.+. ....+-++|-++..++.+|.
T Consensus 161 mQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~- 239 (415)
T COG5533 161 MQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCE- 239 (415)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhhhhhhhhhhh-
Confidence 79999999999999999877443 11345667888888888886
Q ss_pred CCCcccccccccceeeeccCCCCCCCcccccccCCcceecccccccc------chhhhhcccccccccceEEEEEeccCC
Q 001625 851 DSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEE------SKVEEINSKIVKVKRDATKRVLINKAP 924 (1042)
Q Consensus 851 ~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~n~~~~~~~~~~~------~~~~~~~C~kC~~~~~a~k~~~I~~lP 924 (1042)
.|+.++++...+..+.++.+.... +...+|...+ +..+.|.|++|++++.++|++.|.+||
T Consensus 240 -~C~~TStT~a~fs~l~vp~~~v~~------------~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP 306 (415)
T COG5533 240 -ACNYTSTTIAMFSTLLVPPYEVVQ------------LGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLP 306 (415)
T ss_pred -hcCCceeEEeccceeeeccchhee------------ecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecC
Confidence 899999999888888888543321 1122222222 224789999999999999999999999
Q ss_pred CeEEEEEeccccCccCccccccceee----cccccccCCCCCCCCCCCCCcceEEEEEEEEeCccCCCeEEEEEECCCCC
Q 001625 925 PILTIHLKRFSQDARGRLSKLNGHVN----FSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKN 1000 (1042)
Q Consensus 925 ~vLiIhLkRF~~d~~g~~~Ki~~~V~----fP~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~ 1000 (1042)
.+|||||+||.....|+ .|+..+-- ||....+.+... ..-.-.+.+|+|+|||+|.|+.++|||+++|+
T Consensus 307 ~~LII~i~RF~i~V~~~-~kiD~p~gw~~~~~~e~~v~~~f~-~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~----- 379 (415)
T COG5533 307 DVLIIHISRFHISVMGR-KKIDTPQGWKNTASVEVNVTLLFN-NGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVK----- 379 (415)
T ss_pred ceEEEEeeeeeEEeecc-cccCCCcchhccCCceeccccccc-CCCCCCccceeEEEEEeecceecCceeEEeee-----
Confidence 99999999997544443 44444332 221111111111 01122457899999999999999999999999
Q ss_pred ccccccccCCCeEEEEcCceeeeechhhhcC-CCcEEEEEEEC
Q 001625 1001 KVKAKKESVGGVWYHASDVYVREVSLEEVLR-CEAYILFYEKI 1042 (1042)
Q Consensus 1001 ~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~-~~aYiLfYeRi 1042 (1042)
.++.|+.|||+.|+.++...-.. ..+|||||+|+
T Consensus 380 --------~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 380 --------RSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred --------ecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 35889999999999988654443 35899999995
No 67
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=91.51 E-value=0.12 Score=55.11 Aligned_cols=65 Identities=15% Similarity=-0.000 Sum_probs=50.5
Q ss_pred CCccHHHHHhhhhhhcCccCCc---------ccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQ---------REKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGA 871 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~---------~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~ 871 (1042)
.||||+||+..+++.|+.++.. .....+..+|++.....+.|..+.........+.++.+.++..
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~ 94 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVK 94 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCC
Confidence 5999999999999999988765 2457899999999999999985544455555666666666643
No 68
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=0.14 Score=61.15 Aligned_cols=128 Identities=32% Similarity=0.473 Sum_probs=114.3
Q ss_pred hhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeecc-cccccCCCCCCCCCCCCCcceEEEEEE
Q 001625 901 EEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFS-EIINLRPYMDPGCTDHDNYDYRLVGVV 979 (1042)
Q Consensus 901 ~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~~Y~L~aVI 979 (1042)
+.|+|+.|+.++.|+|++.|.++|.|||||||||.+..+. ..|+..-|.|| ..|||..+...- ......|+|+||=
T Consensus 694 DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsf-rdKiddlVeyPiddldLs~~~~~~--~~p~liydlyavD 770 (823)
T COG5560 694 DSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSF-RDKIDDLVEYPIDDLDLSGVEYMV--DDPRLIYDLYAVD 770 (823)
T ss_pred ccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccc-hhhhhhhhccccccccccceEEee--cCcceEEEeeecc
Confidence 5689999999999999999999999999999999986444 46999999999 789998776433 2334889999999
Q ss_pred EEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEEEC
Q 001625 980 EHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 980 ~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYeRi 1042 (1042)
.|.|.+.+|||+||+|.. .+++||+|||++|++|.+++.....||+|||+|.
T Consensus 771 NHygglsgGHYtAyarn~-----------~n~~wy~fdDsritevdped~vtssaYvLFyrrk 822 (823)
T COG5560 771 NHYGGLSGGHYTAYARNF-----------ANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822 (823)
T ss_pred ccccccCCcceeeeeecc-----------cCCceEEecCccccccCccccccceeEEEEEEec
Confidence 999999999999999966 5788999999999999999999999999999984
No 69
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=0.15 Score=61.86 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=173.5
Q ss_pred CCccHHHHHhhhhhhcCccCCcc-cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQR-EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSD 885 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~-~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~ 885 (1042)
.||||.|||+.|++.+++.++.- ....+...|+|.....-.|..|.-..+..+.+..+++.|.- . ......
T Consensus 181 eqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~-~-------nLeesL 252 (944)
T KOG1866|consen 181 EQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIRH-Q-------NLEESL 252 (944)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeeccc-c-------hHHHHH
Confidence 58999999999999999999765 45577888999988888898776667555555555555541 1 111222
Q ss_pred cceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeecccccccCCCCCCC
Q 001625 886 SQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLRPYMDPG 964 (1042)
Q Consensus 886 n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~~~~~~~ 964 (1042)
++|.+|... +.-.-|+|+||+.|..+.||+.|.+||++|+||||||.|| .++...|.+..+.||..|||.||+..+
T Consensus 253 eqfv~gevl---EG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg 329 (944)
T KOG1866|consen 253 EQFVKGEVL---EGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSG 329 (944)
T ss_pred HHHHHHHHh---cCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehh
Confidence 345555544 3335689999999999999999999999999999999999 778889999999999999999998543
Q ss_pred CC---------------CCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhh
Q 001625 965 CT---------------DHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEV 1029 (1042)
Q Consensus 965 ~~---------------~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev 1029 (1042)
.. .....+|+|+|||+|+|-+.+|||++||+.. .+..+++||+|||..|++.+..++
T Consensus 330 ~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~r--------r~~~~~kWykfnD~~Vte~~~n~m 401 (944)
T KOG1866|consen 330 VAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQR--------RGEDGNKWYKFNDGDVTECKMNEM 401 (944)
T ss_pred hhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhh--------ccCCCCceEeccCccccccchhhH
Confidence 22 1245789999999999999999999999853 223469999999999999998877
Q ss_pred cCC--------------------CcEEEEEEEC
Q 001625 1030 LRC--------------------EAYILFYEKI 1042 (1042)
Q Consensus 1030 ~~~--------------------~aYiLfYeRi 1042 (1042)
... +||||||+|+
T Consensus 402 e~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 402 ENECFGGEYMQMMKRMSYRRRWWNAYMLFYERM 434 (944)
T ss_pred HHHhhcchhhhcccccchHHHhhhhHHHHHHHh
Confidence 532 3999999985
No 70
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=0.51 Score=58.42 Aligned_cols=226 Identities=29% Similarity=0.370 Sum_probs=173.5
Q ss_pred cccccccccCCCCC-CCccHHHHHhhhhhhcCccCCcc------------------------------------cCCccc
Q 001625 793 FCESLVSQSGKTDC-FNQDCAEVESGLTNDVNPAVPQR------------------------------------EKGKMK 835 (1042)
Q Consensus 793 ~~~~~~~~~~~~~~-~~QDa~Ef~~~l~~~l~~~~~~~------------------------------------~~~~i~ 835 (1042)
|-..+.+..+..-+ .||||+||+..+++.|++.+... ....+.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 33333333344444 69999999999999998866331 112378
Q ss_pred cccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCcccccccCCcceeccccccccc------hhhhhcccccc
Q 001625 836 INDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEES------KVEEINSKIVK 909 (1042)
Q Consensus 836 ~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~~~n~~~~~~~~~~~~------~~~~~~C~kC~ 909 (1042)
++|.+++++.++|. .|+.++.++..+..++++.+....... .+....|...+. -.+.|.|++|+
T Consensus 455 ~lf~gQ~ks~Lkc~--~cg~~s~t~~~f~~lslpIp~~~~~~~--------~~~L~~C~~~ft~~ekle~~~~w~Cp~c~ 524 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQ--ACGYTSTTFETFTDLSLPIPKKGFAGG--------KVSLEDCLSLFTKEEKLEGDEAWLCPRCK 524 (653)
T ss_pred HHHHHHHHhheehh--hcCCcceeeecceeeEEeccccccccc--------ccchHhhhccccchhhcccccccCCcccc
Confidence 89999999999987 899999999999999988876554322 111222332222 23459999999
Q ss_pred cccceE--EEEEeccCCCeEEEEEeccccCccCccccccceeeccc-ccccCCCCCCCCCCCCCcceEEEEEEEEeCccC
Q 001625 910 VKRDAT--KRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSE-IINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMR 986 (1042)
Q Consensus 910 ~~~~a~--k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~ 986 (1042)
.++..+ |+..|.+||++|+|||+||.++. +...|+..-|.||. .+++.++... .......|+|+|||+|.|+.+
T Consensus 525 ~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~-~~~~k~~~~v~~~~~~~~~~~~~~~--~~~~~~~Y~L~aVv~H~Gtl~ 601 (653)
T KOG1868|consen 525 HKESSKTLKKLTILRLPKILIIHLKRFSSDG-NSFNKLSTGVDFPLREADLSPRFAE--KGNNPKSYRLYAVVNHSGTLN 601 (653)
T ss_pred CcccccccceeeeecCCHHHHHHHHHhccCc-ccccccceeeccchHhhhhchhccc--cCCCccceeeEEEEeccCccc
Confidence 999985 99999999999999999999875 44579999999994 5666654432 223345599999999999999
Q ss_pred CCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEEEEC
Q 001625 987 GGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 987 ~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfYeRi 1042 (1042)
+|||+|||+.. ..+.|+.|||+.|+.++...+....||||||+|+
T Consensus 602 sGHYta~~~~~-----------~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 602 SGHYTAYVYKN-----------EKQRWFTFDDSEVSPISETDVGSSSAYILFYERL 646 (653)
T ss_pred CCceEEEEeec-----------CCCceEEecCeeeeccccccccCCCceEEEeecC
Confidence 99999999854 4678999999999999999999889999999985
No 71
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=79.97 E-value=0.94 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=16.1
Q ss_pred cccccccCCCcchhHHHHHHHhc
Q 001625 228 VVRGLANLGNTCFFNSVMQNLLA 250 (1042)
Q Consensus 228 ~~~GL~NlGNTCYmNSVLQ~L~~ 250 (1042)
.+.|+.|.+|||.+||++|.+-.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHH
Confidence 45699999999999999998654
No 72
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=0.72 Score=56.51 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCCccHHHHHhhhhhhcCccCCcccCCccccccceeeEEEeeeccCCCcccccccccceeeeccCC
Q 001625 806 CFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGA 871 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~ 871 (1042)
-+||||||.|..|++.|+.+........|...||++..+...|. .|.+.+..++.+..++++.+
T Consensus 304 ~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scl--e~~q~sKvYe~f~~~~~~vp 367 (877)
T KOG1873|consen 304 YDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCL--ECGQKSKVYEPFKDLSLPVP 367 (877)
T ss_pred cccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhh--hccchhhcccccccCCcccc
Confidence 37999999999999999998877777779999999999999998 45566777777877777765
No 73
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=73.70 E-value=2.3 Score=43.11 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=31.1
Q ss_pred CCeEEeCccCCcccCCCCCCCCCCcccccccccCCCcEE-EeccC---CCeEEEcCCCC
Q 001625 105 KAIWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLV-IQWEN---PHLRWCFPCNT 159 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~v~-~~l~~---~~~v~Cy~Cd~ 159 (1042)
..+-.|+.|++.||-.. +....+|...|...+.|.-+ +.-++ ...+.||.|..
T Consensus 12 ~~vv~C~~c~kWFCNg~--~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 12 SCVVKCNTCNKWFCNGR--GNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGS 68 (152)
T ss_dssp CCEEEETTTTEEEES----TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT--
T ss_pred ccEeEcCCCCcEeecCC--CCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCC
Confidence 67889999999999543 24578999999999988543 43332 12469999975
No 74
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=69.55 E-value=3.7 Score=49.73 Aligned_cols=217 Identities=31% Similarity=0.462 Sum_probs=174.3
Q ss_pred CCCccHHHHHhhhhhhcCccC---------Cccc---CCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCC
Q 001625 806 CFNQDCAEVESGLTNDVNPAV---------PQRE---KGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATS 873 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~---------~~~~---~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~ 873 (1042)
..||||+||+..+++.++... .... ..++...|.+.+.+.+.|. .|...+.....++.+++..+..
T Consensus 246 ~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~--~c~~~S~~~dpf~disL~i~~~ 323 (492)
T KOG1867|consen 246 YEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQ--TCGSKSTTYDPFMDISLDIPDQ 323 (492)
T ss_pred ccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeeh--hhcceeeeccCccceeeecchh
Confidence 469999999999999999877 1112 4688899999999999987 7887778788888888877644
Q ss_pred CCCcccccccCCcceeccccccc------cchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccc
Q 001625 874 SGYSAEKVYQSDSQLVAGNCESE------ESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNG 947 (1042)
Q Consensus 874 ~~~~~~e~~~~~n~~~~~~~~~~------~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~ 947 (1042)
......-.. ......|.+. .....++.|..|+.++.++|+..|.+||.+|.+||+||.+...+...|+..
T Consensus 324 ~~~~~~~~~----~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~ 399 (492)
T KOG1867|consen 324 FTSSSVRSP----ELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDS 399 (492)
T ss_pred ccCcccccc----hhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCc
Confidence 211110000 0111112211 122567899999999999999999999999999999999987776669999
Q ss_pred eeecccccccCCCCCCCCC---CCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeee
Q 001625 948 HVNFSEIINLRPYMDPGCT---DHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREV 1024 (1042)
Q Consensus 948 ~V~fP~~LdL~~~~~~~~~---~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~v 1024 (1042)
.|.||..|+|.+|+..+.. +.....|+|+|||+|.|.+++|||+||+|. .+.||+|||+.|+.+
T Consensus 400 ~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~-------------~~~~~~~dDs~v~~~ 466 (492)
T KOG1867|consen 400 YVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ-------------SGGWFKCDDSTVTKV 466 (492)
T ss_pred ccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe-------------CCCcEEEcCeEEEEe
Confidence 9999999999999975222 234689999999999999999999999994 577999999999999
Q ss_pred chhhhcCCCcEEEEEEE
Q 001625 1025 SLEEVLRCEAYILFYEK 1041 (1042)
Q Consensus 1025 s~~ev~~~~aYiLfYeR 1041 (1042)
++++|++..||+|||.+
T Consensus 467 s~~eVl~~~aylLFY~~ 483 (492)
T KOG1867|consen 467 SEEEVLSSQAYLLFYTQ 483 (492)
T ss_pred eHHHhhhchhhheehhH
Confidence 99999999999999975
No 75
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.69 E-value=0.81 Score=55.27 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=179.9
Q ss_pred CCCCccHHHHHhhhhhhcCccCCcc-cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCC--------
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQR-EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSG-------- 875 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~-~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~-------- 875 (1042)
.++|.|.+|....+++.|+-..+.. ..+.|.+++.+.|...+.|. .|+.++.....||.+.++..+-..
T Consensus 140 a~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl--~c~~e~~~~d~fld~pl~v~pfg~~~ay~sie 217 (1203)
T KOG4598|consen 140 AYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACL--KCGRESVKTDYFLDLPLAVKPFGAIHAYKSVE 217 (1203)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHH--HcCccccccceeecccccccCCcchhhhhhHH
Confidence 3589999999999999999887654 66789999999999999998 899999999999999998865432
Q ss_pred -----CcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCcccccccee
Q 001625 876 -----YSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHV 949 (1042)
Q Consensus 876 -----~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V 949 (1042)
+..++.+++.|+| -|++|+++++|.|.+.|..+|-+|+||||||.|| .+..+.|++.+|
T Consensus 218 eal~afvqpe~ldg~nqy---------------~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~ 282 (1203)
T KOG4598|consen 218 EALTAFVQPELLDGSNQY---------------MCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKM 282 (1203)
T ss_pred HHHHHhcChhhcCCccHH---------------HHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccc
Confidence 3345666666554 8999999999999999999999999999999999 445567999999
Q ss_pred ecccccccCCCCCCCCC---------------------------------------------------------------
Q 001625 950 NFSEIINLRPYMDPGCT--------------------------------------------------------------- 966 (1042)
Q Consensus 950 ~fP~~LdL~~~~~~~~~--------------------------------------------------------------- 966 (1042)
.||..|||..|...+-.
T Consensus 283 tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~ 362 (1203)
T KOG4598|consen 283 TFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIV 362 (1203)
T ss_pred cCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHh
Confidence 99999999888732211
Q ss_pred -CCCCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCC-------------
Q 001625 967 -DHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRC------------- 1032 (1042)
Q Consensus 967 -~~~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~------------- 1032 (1042)
...++.|+|++|.+|.|++.+|||+||||.- .++.||.|||.+|+-++.++|...
T Consensus 363 ~~sg~~~yelf~imihsg~a~gghy~ayik~~-----------d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~t 431 (1203)
T KOG4598|consen 363 KTSGDNVYELFSVMVHSGNAAGGHYFAYIKNL-----------DQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNT 431 (1203)
T ss_pred hcCCccHHHhhhhheecCCCCCceeeeeeccc-----------CcCceEEecCccccccCHHHHHHhhCCCCCCccccCc
Confidence 1245789999999999999999999999976 578899999999999999999742
Q ss_pred CcEEEEEEEC
Q 001625 1033 EAYILFYEKI 1042 (1042)
Q Consensus 1033 ~aYiLfYeRi 1042 (1042)
+||||+|+||
T Consensus 432 naymlmyr~i 441 (1203)
T KOG4598|consen 432 NAYMLMYRRI 441 (1203)
T ss_pred chhhhhhhhc
Confidence 5999999986
No 76
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=66.85 E-value=6.6 Score=44.86 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=42.3
Q ss_pred cccccccCCCcchhHHHHHHHhcCHH-HHHHHhcccCCCChHHHHHHHHHHHhCCCCCCCcccCchhhHHHhhhcCCCCC
Q 001625 228 VVRGLANLGNTCFFNSVMQNLLAMSQ-LQDYFLNAELTFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSKAPQFK 306 (1042)
Q Consensus 228 ~~~GL~NlGNTCYmNSVLQ~L~~ip~-fr~~~l~~~~~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~l~~~~~~F~ 306 (1042)
|++=|+=.-|.||+||++=.|=++.. |+. .++..+|.++..+ +|..|...+-. ...+.
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-------------~~l~~aw~~f~~G-------~~~~fVa~~Ya-~~~~~ 159 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS-------------PGLDEAWNEFKAG-------DPAPFVAWCYA-STNAK 159 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS-------------HHHHHHHHHHHTT---------HHHHHHHHH-HTT--
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC-------------HHHHHHHHHHhCC-------ChHHHHHHHHH-HcCCC
Confidence 44556666899999999876655431 221 1445566655543 35566655432 34456
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 001625 307 GYQQHDSHELLRCLLDGLC 325 (1042)
Q Consensus 307 ~~~QQDAhEFL~~LLd~L~ 325 (1042)
.++--||+++|..||+.++
T Consensus 160 ~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 160 KGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp TTS---HHHHHHHHHTTB-
T ss_pred CCCCcCHHHHHHHHHHhcc
Confidence 6889999999999997653
No 77
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=63.33 E-value=3.5 Score=54.91 Aligned_cols=216 Identities=25% Similarity=0.350 Sum_probs=166.6
Q ss_pred CCCCccHHHHHhhhhhhcCccCCccc-CCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCCCCccccccc
Q 001625 805 DCFNQDCAEVESGLTNDVNPAVPQRE-KGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQ 883 (1042)
Q Consensus 805 ~~~~QDa~Ef~~~l~~~l~~~~~~~~-~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~~~~~~e~~~ 883 (1042)
.++|||++||...|++.|+..+.... .+.+.++|.+++.+.+.|.+ |..++...+.++.+.+....... ...
T Consensus 250 ~~~QqDvqEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~--~~~~s~r~e~f~d~ql~~~g~~n-----l~~ 322 (1093)
T KOG1863|consen 250 SFEQQDVQEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCID--VDFESSRSESFLDLQLNGKGVKN-----LED 322 (1093)
T ss_pred HHhhhhHHHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEe--eeeeccccccccCccccccchhh-----HHH
Confidence 46899999999999999999887664 88999999999999999984 44455555666665555422110 111
Q ss_pred CCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeecccccccCCCCC
Q 001625 884 SDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLRPYMD 962 (1042)
Q Consensus 884 ~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~~~~~ 962 (1042)
.-+.|........ +..+|..|...+.|.|.+.+.+||+||.|+|+||.|+ ..+...|++....||..|+|.+|+.
T Consensus 323 sf~~y~~~E~l~g----dn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~ 398 (1093)
T KOG1863|consen 323 SLHLYFEAEILLG----DNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLS 398 (1093)
T ss_pred HHHHhhhHHHhcC----CccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhcc
Confidence 1111111111111 1116899999999999999999999999999999998 6677889999999999999999987
Q ss_pred C-CCCCC-CCcceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCC--------
Q 001625 963 P-GCTDH-DNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRC-------- 1032 (1042)
Q Consensus 963 ~-~~~~~-~~~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~-------- 1032 (1042)
. ..... ..+.|+|.||++|.|..++|||++|++.+ ..+.|+.|||..|..++..+++..
T Consensus 399 ~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~-----------~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~ 467 (1093)
T KOG1863|consen 399 RFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPK-----------LDGKWVKFDDLVVTVVSEKEALEQNYGTEEIE 467 (1093)
T ss_pred ccchhhhhccceeccchhhcccccccCccceeeecch-----------hhccceeccCceeeeccHHHHHHhhCCCcchh
Confidence 3 22222 33599999999998899999999999944 578999999999999998887643
Q ss_pred --C------cEEEEEEEC
Q 001625 1033 --E------AYILFYEKI 1042 (1042)
Q Consensus 1033 --~------aYiLfYeRi 1042 (1042)
. ||||+|-|.
T Consensus 468 ~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 468 LSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred hhcccccCCcceEEEEec
Confidence 1 799999873
No 78
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=62.12 E-value=4 Score=44.03 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=37.4
Q ss_pred CCccHHHHHhhhhhhcCccCCcc------------cCCccccccceeeEEEeeeccCCC
Q 001625 807 FNQDCAEVESGLTNDVNPAVPQR------------EKGKMKINDAVEMQSRSSCLRDSC 853 (1042)
Q Consensus 807 ~~QDa~Ef~~~l~~~l~~~~~~~------------~~~~i~~~f~~~~~s~~~C~~~~c 853 (1042)
.||||+||+..|++.|+...... ....+..+|++.....+.|..+..
T Consensus 92 ~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~ 150 (269)
T PF00443_consen 92 EQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKN 150 (269)
T ss_dssp STEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTC
T ss_pred cccchhhhhcccccccchhhccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999876552 356778999999999999974433
No 79
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=54.24 E-value=30 Score=38.06 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=31.9
Q ss_pred cccCCCcchhHHHHHHHhcCHHHHHHHhcccCCCChHHHHHH
Q 001625 232 LANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTFGPLTIALK 273 (1042)
Q Consensus 232 L~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~l~~~L~ 273 (1042)
-+|--|-|++-++|=+|.|+..|++.+-.......++...|.
T Consensus 5 W~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~~e~s~~~~L~ 46 (275)
T PF15499_consen 5 WKNSNALCWLDCILSALVHLESLKNAVTELCSKEESVFWRLF 46 (275)
T ss_pred ecCccccHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 368889999999999999999999998764444444443333
No 80
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=11 Score=44.50 Aligned_cols=211 Identities=22% Similarity=0.268 Sum_probs=167.1
Q ss_pred CCCCCccHHHHHhhhhhhcCccCCcccCC-----ccccccceeeEEEeeeccCCCcccc--cccccceeeeccCCCCCCC
Q 001625 804 TDCFNQDCAEVESGLTNDVNPAVPQREKG-----KMKINDAVEMQSRSSCLRDSCSQES--ITDQDEGSCSVDGATSSGY 876 (1042)
Q Consensus 804 ~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~-----~i~~~f~~~~~s~~~C~~~~c~~es--~~~~~~l~~~l~~~~~~~~ 876 (1042)
|..+||||.|+|+.++-.+...+...... -++.+|++++..+++|......... .+.+..|.|.+...
T Consensus 193 g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~----- 267 (473)
T KOG1872|consen 193 GIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKT----- 267 (473)
T ss_pred hhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccceEEeee-----
Confidence 44589999999999999999988665444 3788899999999999976665333 45666677777632
Q ss_pred cccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeeccccc
Q 001625 877 SAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEII 955 (1042)
Q Consensus 877 ~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~L 955 (1042)
.+.+..|....+.+++++ ..+.-++.....|...|.+||.+|+|++.||.|. ..+...|+...|.||..|
T Consensus 268 --------~~~~k~Gl~~~~~e~~~K-~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~l 338 (473)
T KOG1872|consen 268 --------VHDMRFGLKSGLSEEIQK-ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDL 338 (473)
T ss_pred --------echhhhhhhhhhhhhhhc-cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhh
Confidence 233334444444455544 6677777788889999999999999999999997 445666999999999999
Q ss_pred ccCCCCCCCCC--------------------------------------------C---CC-CcceEEEEEEEEeC-ccC
Q 001625 956 NLRPYMDPGCT--------------------------------------------D---HD-NYDYRLVGVVEHLG-TMR 986 (1042)
Q Consensus 956 dL~~~~~~~~~--------------------------------------------~---~~-~~~Y~L~aVI~H~G-s~~ 986 (1042)
|...+|.+... . .. ...|+|+|||.|.| +..
T Consensus 339 d~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~ 418 (473)
T KOG1872|consen 339 DQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSK 418 (473)
T ss_pred hHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccC
Confidence 99999866543 0 01 35699999999999 899
Q ss_pred CCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCC-------CcEEEEEE
Q 001625 987 GGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRC-------EAYILFYE 1040 (1042)
Q Consensus 987 ~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~-------~aYiLfYe 1040 (1042)
+|||++|+|.. .+.|+.|||+.|+.+..+.++.. .||||+|.
T Consensus 419 sghy~aw~r~s------------~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 419 SGHYVAWNRVS------------EDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred CCcceEEEecc------------CCceeeccccccccccccceeeecCCCccchhhheeec
Confidence 99999999964 56999999999999999999865 49999996
No 81
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=40.81 E-value=33 Score=38.89 Aligned_cols=56 Identities=21% Similarity=0.135 Sum_probs=39.5
Q ss_pred ceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEe-ccccCccCccc
Q 001625 887 QLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLK-RFSQDARGRLS 943 (1042)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLk-RF~~d~~g~~~ 943 (1042)
.+.|.-|.+...+..+-+|+.||.++...-.+.+..= --+..||+ ||.|+.+|...
T Consensus 242 iLRCh~Cfsit~~m~k~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n~RG~~Y 298 (376)
T KOG2463|consen 242 ILRCHGCFSITSEMPKDFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWNNRGLQY 298 (376)
T ss_pred eeEeeeeeEecCccchhcccccCCCeeeEEEEEecCC-CceeEEeecccccccCccee
Confidence 4557778877778888899999988444344444433 66888988 99998666433
No 82
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=40.30 E-value=36 Score=35.55 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=24.6
Q ss_pred EeC-c-cCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeech
Q 001625 981 HLG-T-MRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSL 1026 (1042)
Q Consensus 981 H~G-s-~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~ 1026 (1042)
|.| . -..||.+.+++ ..+.||.|||+.+.+-++
T Consensus 130 ~agi~~~g~~Havfa~~-------------ts~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 130 HAGIFLKGQEHAVFACV-------------TSDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp EEEEEEESTTEEEEEEE-------------ETTCEEEEETTEEEE---
T ss_pred hhHheecCCcceEEEEE-------------eeCcEEEecCCeeeeCCC
Confidence 555 2 35799999998 467899999999988654
No 83
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=34.28 E-value=25 Score=39.62 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=152.8
Q ss_pred CccHHHHHhhhhhhcCccCCcc--------------cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCC
Q 001625 808 NQDCAEVESGLTNDVNPAVPQR--------------EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATS 873 (1042)
Q Consensus 808 ~QDa~Ef~~~l~~~l~~~~~~~--------------~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~ 873 (1042)
+||.++|+.+|+++|...+... ....+..+|+......++| ..|+.++......+.+.+.++..
T Consensus 82 ~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c--~~c~~~~~~~~~~~~~~l~yp~~ 159 (295)
T PF13423_consen 82 QQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRC--TSCGHESVKESSTLVLDLPYPPS 159 (295)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecc--cccCCeEEeecceeeeeccCCCC
Confidence 8999999999999999876332 2457889999999999999 47888888888889999988763
Q ss_pred CCCcccccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccCccCccccccceeeccc
Q 001625 874 SGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSE 953 (1042)
Q Consensus 874 ~~~~~~e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~g~~~Ki~~~V~fP~ 953 (1042)
... .... +.+..+... +.....+|++|++.+.+..+..|.+||+||.|.++|+.++..+ ..|+...+.||.
T Consensus 160 ~~~----~tf~-~~Le~sl~~---e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w-~~~~~~~~~ip~ 230 (295)
T PF13423_consen 160 NSN----VTFS-QVLEHSLNR---EQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFW-PKKNWLKIWIPP 230 (295)
T ss_pred Ccc----chHH-HHHHHHHhh---cccccccccccccccceeeeeeccCCCcEEEEEccCCCccccc-ccccCCceecce
Confidence 210 0000 111111111 2345689999999999999999999999999999999988444 679999999999
Q ss_pred ccccCCCCCCCCC-----CCCCcceEEEEEEEEeC-ccCCCeEEEEEECCCCCccccccccCCCeEEEEcCcee
Q 001625 954 IINLRPYMDPGCT-----DHDNYDYRLVGVVEHLG-TMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYV 1021 (1042)
Q Consensus 954 ~LdL~~~~~~~~~-----~~~~~~Y~L~aVI~H~G-s~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V 1021 (1042)
.+++..++..+.. .....+|+|.|+|+|+| +.++||||+|||.+. ...++||.|||..|
T Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~---------~~~~~W~lFNDflV 295 (295)
T PF13423_consen 231 SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGP---------SDDSQWYLFNDFLV 295 (295)
T ss_pred eeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCC---------CCCCcEEEECcEeC
Confidence 9999988855432 44668999999999999 699999999999763 12378999999876
No 84
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=32.69 E-value=6.7 Score=48.55 Aligned_cols=209 Identities=26% Similarity=0.432 Sum_probs=168.2
Q ss_pred CCCccHHHHHhhhhhhcCccCCcc-cCCccccccceeeEEEeeeccCCCcccccccccceeeeccCCCCC-----CCccc
Q 001625 806 CFNQDCAEVESGLTNDVNPAVPQR-EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSS-----GYSAE 879 (1042)
Q Consensus 806 ~~~QDa~Ef~~~l~~~l~~~~~~~-~~~~i~~~f~~~~~s~~~C~~~~c~~es~~~~~~l~~~l~~~~~~-----~~~~~ 879 (1042)
++|.|.+||-..|++.|+..+... ..+.+..+|-+.|++.+.|.+..-..-..+++--+.+++..-... .+-..
T Consensus 271 f~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqv 350 (1089)
T COG5077 271 FMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQV 350 (1089)
T ss_pred HHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhh
Confidence 478899999999999999977544 667888999999999999986544433334443444444321111 13345
Q ss_pred ccccCCcceeccccccccchhhhhcccccccccceEEEEEeccCCCeEEEEEeccccC-ccCccccccceeecccccccC
Q 001625 880 KVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQD-ARGRLSKLNGHVNFSEIINLR 958 (1042)
Q Consensus 880 e~~~~~n~~~~~~~~~~~~~~~~~~C~kC~~~~~a~k~~~I~~lP~vLiIhLkRF~~d-~~g~~~Ki~~~V~fP~~LdL~ 958 (1042)
|.+.++|.|.+.... .++|.|.+-+.+|||||.||||||.|| .++++.||+.+..||+.+||.
T Consensus 351 E~l~GdN~Y~ae~~G----------------lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~ 414 (1089)
T COG5077 351 ETLDGDNRYNAEKHG----------------LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLL 414 (1089)
T ss_pred eeccCCccccccccc----------------chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccc
Confidence 667777776544444 599999999999999999999999999 678889999999999999999
Q ss_pred CCCCCCCCCCCC--cceEEEEEEEEeCccCCCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCC---
Q 001625 959 PYMDPGCTDHDN--YDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCE--- 1033 (1042)
Q Consensus 959 ~~~~~~~~~~~~--~~Y~L~aVI~H~Gs~~~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~--- 1033 (1042)
+|++.......+ ..|.|+||++|.|+.+.|||+|++|.. .+++||+|||.+|+++++.+|+..+
T Consensus 415 pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe-----------~dg~WykfdDtrVtrat~kevleeNfGg 483 (1089)
T COG5077 415 PFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPE-----------KDGRWYKFDDTRVTRATEKEVLEENFGG 483 (1089)
T ss_pred cccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccc-----------cCCCceeecceehhhHHHHHHHHHhcCC
Confidence 999877665444 899999999999999999999999954 5789999999999999999998532
Q ss_pred -------------------cEEEEEEE
Q 001625 1034 -------------------AYILFYEK 1041 (1042)
Q Consensus 1034 -------------------aYiLfYeR 1041 (1042)
||||+|-|
T Consensus 484 d~~~~~k~r~~~~~kRfmsAYmLvYlR 510 (1089)
T COG5077 484 DHPYKDKIRDHSGIKRFMSAYMLVYLR 510 (1089)
T ss_pred CCCCcccccCCchhhhhhhhheeeeeh
Confidence 89999976
No 85
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=32.30 E-value=20 Score=30.49 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.8
Q ss_pred CCeEEeCccCCcc
Q 001625 105 KAIWVCLGCGHYA 117 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~ 117 (1042)
.+.|.|..||+.|
T Consensus 46 ~~~Y~CP~CGF~G 58 (59)
T PRK14890 46 SNPYTCPKCGFEG 58 (59)
T ss_pred CCceECCCCCCcC
Confidence 6789999999764
No 86
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=23 Score=30.12 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.9
Q ss_pred CCeEEeCccCCcc
Q 001625 105 KAIWVCLGCGHYA 117 (1042)
Q Consensus 105 ~~lw~CL~Cg~~~ 117 (1042)
.+.|.|..||..|
T Consensus 48 g~~Y~Cp~CGF~G 60 (61)
T COG2888 48 GNPYRCPKCGFEG 60 (61)
T ss_pred CCceECCCcCccC
Confidence 6789999999764
No 87
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=28.34 E-value=41 Score=30.93 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=24.2
Q ss_pred CCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCCcccCC
Q 001625 71 PIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGG 120 (1042)
Q Consensus 71 ~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~~~Cgr 120 (1042)
...|..|... ..+|-+ .-+|.|-.||+.|=|.
T Consensus 35 ~~~Cp~C~~~-~VkR~a-----------------~GIW~C~kCg~~fAGg 66 (89)
T COG1997 35 KHVCPFCGRT-TVKRIA-----------------TGIWKCRKCGAKFAGG 66 (89)
T ss_pred CCcCCCCCCc-ceeeec-----------------cCeEEcCCCCCeeccc
Confidence 4679999986 333321 6699999999999875
No 88
>COG1773 Rubredoxin [Energy production and conversion]
Probab=27.81 E-value=40 Score=28.43 Aligned_cols=42 Identities=31% Similarity=0.601 Sum_probs=28.5
Q ss_pred CCccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCC
Q 001625 71 PIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGH 115 (1042)
Q Consensus 71 ~~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~ 115 (1042)
.++|..|.-.- ++.+|--..+...|+.+.+...-|+|..||.
T Consensus 3 ~~~C~~CG~vY---d~e~Gdp~~gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVY---DPEKGDPRCGIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred ceEecCCceEe---ccccCCccCCCCCCCchhhCCCccCCCCCCC
Confidence 36788888642 2233334444455677788899999999995
No 89
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.87 E-value=36 Score=25.68 Aligned_cols=14 Identities=43% Similarity=1.042 Sum_probs=11.5
Q ss_pred eEEeCccCCcccCC
Q 001625 107 IWVCLGCGHYACGG 120 (1042)
Q Consensus 107 lw~CL~Cg~~~Cgr 120 (1042)
.|+|..||++.=|.
T Consensus 2 ~~~C~~CG~i~~g~ 15 (34)
T cd00729 2 VWVCPVCGYIHEGE 15 (34)
T ss_pred eEECCCCCCEeECC
Confidence 69999999997554
No 90
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.48 E-value=46 Score=27.49 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=27.0
Q ss_pred CccccccCCcCCCCCCCCCCCCCcccCCCccCCCCeEEeCccCC
Q 001625 72 IRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGH 115 (1042)
Q Consensus 72 ~~C~~C~~~~~~~r~~~~~~~~~~k~~~~~~~~~~lw~CL~Cg~ 115 (1042)
+.|..|...--..+|. -.++...|..+.++..-|.|..||.
T Consensus 2 y~C~~CgyiYd~~~Gd---~~~~i~pGt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 2 YECRICGYIYDPAEGD---PDEGIPPGTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred cCCCCCCeEECCCCCC---cccCcCCCCCHhHCCCCCCCCCCCC
Confidence 4688888753333333 2334445677778888999999984
No 91
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=20.48 E-value=3.2e+02 Score=25.91 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=34.1
Q ss_pred CcceEEEEEEEE---eC-ccC------CCeEEEEEECCCCCccccccccCCCeEEEEcCceeeeechhhhcCCCcEEEEE
Q 001625 970 NYDYRLVGVVEH---LG-TMR------GGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFY 1039 (1042)
Q Consensus 970 ~~~Y~L~aVI~H---~G-s~~------~GHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~~ev~~~~aYiLfY 1039 (1042)
...-++.+.|.| .| ..+ -.||+..+. ..+||..|-.++...-.+.+||+-|+
T Consensus 12 g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~------------------v~~ng~~v~~~~~~~siS~NP~l~F~ 73 (100)
T PF08770_consen 12 GGVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVE------------------VTYNGKPVFRADWGPSISENPYLRFS 73 (100)
T ss_dssp TEEEEEEEEE----B-S-BB-TTS-BB--B-EEEEE------------------EEETTEEEEEEEE-TTB-SS-EEEEE
T ss_pred CCcEEEEEEEECCCccccccCCCCCCCChHheEEEE------------------EEECCEEEEEEEeCCcccCCCcEEEE
Confidence 345678888888 44 222 247887776 34799999999999999999999998
Q ss_pred EE
Q 001625 1040 EK 1041 (1042)
Q Consensus 1040 eR 1041 (1042)
-+
T Consensus 74 ~~ 75 (100)
T PF08770_consen 74 FK 75 (100)
T ss_dssp EE
T ss_pred Ee
Confidence 54
Done!