Query 001627
Match_columns 1042
No_of_seqs 473 out of 3307
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 16:38:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001627.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_924-928//hhsearch_pdb/001627hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 649.3 30.7 287 48-389 194-513 (854)
2 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 612.5 30.4 426 45-1042 4-473 (476)
3 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 507.8 30.2 329 225-1042 4-358 (367)
4 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 500.3 27.7 313 224-1042 57-395 (396)
5 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 485.1 24.3 312 227-1042 1-350 (355)
6 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 484.7 30.9 315 224-1042 4-342 (348)
7 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 474.9 28.3 292 226-1042 3-314 (353)
8 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 473.8 28.3 297 221-1042 167-483 (522)
9 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 469.8 21.2 160 226-388 11-191 (404)
10 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 462.0 25.0 144 223-388 18-183 (415)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=649.27 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=218.6
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCC
Q ss_conf 999875477781222100289888766323377577778878887876569876688771881765871147988-9998
Q 001627 48 KPCPHLDKGIDSDKISVKIGSSDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKAIWVCLGCGHYACGGVG-LPTT 126 (1042)
Q Consensus 48 ~~C~Hl~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~r~~~~~~~~~~~~~~~~~~~~~lw~CL~Cg~~~Cgr~~-~~~~ 126 (1042)
..|+|+.....++.. ..+. ...++|+.|... .++|+||+||++||||++ .+.+
T Consensus 194 ~~c~h~~~~~~~~~~-~~~~-~~~~~C~~c~~~------------------------~~lw~CL~Cg~vgC~r~~~~~~~ 247 (854)
T 3ihp_A 194 QVSKHAFSLKQLDNP-ARIP-PCGWKCSKCDMR------------------------ENLWLNLTDGSILCGRRYFDGSG 247 (854)
T ss_dssp CBCTTTTTCCCCSSC-CCCC-SSCCCCSSSCCC------------------------SSEEEETTTCCEEECCBC-CCCB
T ss_pred CCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCC------------------------CCEEEEECCCCCCCCCCCCCCCC
T ss_conf 877381612103555-6679-889937676896------------------------86689712798661513047888
Q ss_pred CCCCCCCCCCCCCCCEEEECCC----CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 8731102322379867986169----974899379985566632234653245899999860510344441100001388
Q 001627 127 PQSHVVRHARQTRHPLVIQWEN----PHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIKGRSTEISSVDVEDAWFGS 202 (1042)
Q Consensus 127 ~~~Ha~~H~~~~~H~~~i~~~~----~~~vyCy~Cd~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 202 (1042)
+++||+.||++++|++++++.+ ..++|||.|+++|+++.+. .++....+++..++++.++...++..
T Consensus 248 ~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l~-----~~l~~~gi~~~~~~kt~k~~~el~~~---- 318 (854)
T 3ihp_A 248 GNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLA-----EHLSHFGIDMLKMQKTDKTMTELEID---- 318 (854)
T ss_dssp CCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEECBCTTHH-----HHHHHTTCCC--------------------
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCEEECCCHH-----HHHHHHCCCCCCCCCCCHHHHHHHHH----
T ss_conf 753899987611875799857767777708981678733475278-----89987372224444550121010033----
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCC---------CCCCCHHHHHH
Q ss_conf 97543-322355322389889997763233322898511489999983688899999606---------58989299999
Q 001627 203 GNVNS-EIKSESTVVSGSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNA---------ELTFGPLTIAL 272 (1042)
Q Consensus 203 ~~~~~-e~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~---------~~~~~~l~~~L 272 (1042)
.+... ++. .....+..+.+..+++++||.|+|||||||||||+|+++|+||++|+.. ..+..++.++|
T Consensus 319 ~n~~~g~~~--~~~~~g~~l~p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l 396 (854)
T 3ihp_A 319 MNQRIGEWE--LIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQV 396 (854)
T ss_dssp ---------------------CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHH
T ss_pred HCCCCCHHH--HHCCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 222200133--313357623545678865517667762033799998572999999985434430256678541188999
Q ss_pred HHHHHHHCCCC------------------CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999718999------------------998524823369876202999999998987999999999997999742038
Q 001627 273 KKLFAETKPET------------------GLRNVINPRSFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKR 334 (1042)
Q Consensus 273 ~~Lf~~l~~~~------------------~~~~~isP~~l~~~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~ 334 (1042)
.+||..|+... .....++|..|+..++..++.|.+++||||||||++||+.|++++..
T Consensus 397 ~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---- 472 (854)
T 3ihp_A 397 AKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---- 472 (854)
T ss_dssp HHHHHHHHSCC---------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT----
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----
T ss_conf 9999987456645444211222233333467775481999999864033112144337899999999999987365----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCC
Q ss_conf 9999999988887543233440899999999189999777894104287516999
Q 001627 335 NSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTK 389 (1042)
Q Consensus 335 ~~~~~~~~~~~~~~~s~I~~iF~G~l~s~v~C~~C~~~S~~~E~F~dLSLpIp~~ 389 (1042)
.+.|.++|+|.+.++++|..|++++.+.++|++|+|+||..
T Consensus 473 --------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------------CCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEEECCCC
T ss_conf --------------68822210735889999648997767763064788457863
No 2
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=612.48 Aligned_cols=426 Identities=29% Similarity=0.513 Sum_probs=328.4
Q ss_pred CCCCCCCCCCCCCCHHHHHCCC-------------CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998754777812221002-------------89-----88876632337757777887888787656987668877
Q 001627 45 KERKPCPHLDKGIDSDKISVKI-------------GS-----SDPIRCEDCREGVGDRRGKKGKGKHGKKKGSSLVDSKA 106 (1042)
Q Consensus 45 ~~~~~C~Hl~~~~~l~~~~~~~-------------~~-----~~~~~C~~C~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 106 (1042)
.....||||...+..++....+ .. ...++|++|.... . .+
T Consensus 4 ~~~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~---------------~-------~~ 61 (476)
T 3mhs_A 4 AAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEIN---------------S-------GA 61 (476)
T ss_dssp -CCCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSBCTTTCCBC---------------S-------SS
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCC---------------C-------CC
T ss_conf 5246881899985014567778888587787652575432265799744366779---------------9-------98
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 18817658711479889998873110232237986798616997489937998556663223465324589999986051
Q 001627 107 IWVCLGCGHYACGGVGLPTTPQSHVVRHARQTRHPLVIQWENPHLRWCFPCNTLIPVEKTEENGENKDALSEVVKLIKGR 186 (1042)
Q Consensus 107 lw~CL~Cg~~~Cgr~~~~~~~~~Ha~~H~~~~~H~~~i~~~~~~~vyCy~Cd~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1042)
+|+||+||++|||+ ++||+.|+.+++|++++++++ ..+|||.|+++|+++.+... . +.++
T Consensus 62 ~~~cl~cg~~~c~~-------~~h~~~H~~~~~h~~~~~~~~-~~~~c~~~~~~v~d~~l~~~-----~-------~~~~ 121 (476)
T 3mhs_A 62 TFMCLQCGFCGCWN-------HSHFLSHSKQIGHIFGINSNN-GLLFCFKCEDYIGNIDLIND-----A-------ILAK 121 (476)
T ss_dssp EEEESSSSCEEETT-------TTHHHHHHHHHCCCEEEETTT-CCEEETTTTEEECSCHHHHT-----G-------GGGG
T ss_pred CEEECCCCCCCCCC-------CHHHHHHHCCCCCCEEEECCC-CCEEECCCCCCCCCHHHHHH-----H-------HHHH
T ss_conf 66958799875698-------309999853049968997799-93886898878346789999-----8-------7651
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCC----
Q ss_conf 0344441100001388975433223553223898899977632333228985114899999836888999996065----
Q 001627 187 STEISSVDVEDAWFGSGNVNSEIKSESTVVSGSDLDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAE---- 262 (1042)
Q Consensus 187 ~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~---- 262 (1042)
... .... + . .......++|++||.|+||||||||+||+|+++|+||++++...
T Consensus 122 ~~~----~~~~--------------~-~----~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~ 178 (476)
T 3mhs_A 122 YWD----DVCT--------------K-T----MVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNN 178 (476)
T ss_dssp GHH----HHHH--------------H-E----ECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHH
T ss_pred CCC----HHHH--------------C-C----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHH
T ss_conf 111----1222--------------1-4----688765788997877088467998999998678999999874503554
Q ss_pred ----CCCCHHHHHHHHHHHHHCCCCCC-------CCCCCCHHH---HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----89892999999999971899999-------852482336---9876202999999998987999999999997999
Q 001627 263 ----LTFGPLTIALKKLFAETKPETGL-------RNVINPRSF---FGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEE 328 (1042)
Q Consensus 263 ----~~~~~l~~~L~~Lf~~l~~~~~~-------~~~isP~~l---~~~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~ 328 (1042)
.+..++.++|..++..++..... ...+.|..+ +..+++..+.|.+++||||||||++||+.||+++
T Consensus 179 ~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~ 258 (476)
T 3mhs_A 179 CKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSY 258 (476)
T ss_dssp CSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45788641058999999999961203333456665565750089999998874512388877599999999999999997
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEE-EEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 7420389999999988887543233440899999999189999777-894104287516999999988740143210369
Q 001627 329 LAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSST-VYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKL 407 (1042)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~I~~iF~G~l~s~v~C~~C~~~S~-~~E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~ 407 (1042)
........ ...........++|+++|+|.+.++++|..|++++. +.++|++|+|+||..
T Consensus 259 ~~~~~~~~--~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~------------------ 318 (476)
T 3mhs_A 259 VLDLPNAK--EVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK------------------ 318 (476)
T ss_dssp HHHCCC---------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC------------------
T ss_pred HHCCCCCC--CCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCEECCCCCCHHHHCCCHHHH------------------
T ss_conf 64156653--3454455668880021132599988998999985178656666613201246------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99878753234655544433222234443554434334567786532247899766444589962233478788999999
Q 001627 408 PPKKSGRIRAKGTKDTHAVTTQSISNLSISSKSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADP 487 (1042)
Q Consensus 408 ~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~ 487 (1042)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98886422333112113432111134678876765554444576410146663221345788754443455334665321
Q 001627 488 LPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHGLTLENNDVLF 567 (1042)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1042)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02479874336300013467776789988767899999998886432234301005752112331100268765565532
Q 001627 568 VQDSGEQDEVSDDSLINSNQIPLLDSKPNLKADSSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVV 647 (1042)
Q Consensus 568 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~ 647 (1042)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 47776544567798889975446999999999654578620046899999877799997699999852023343589984
Q 001627 648 GCRQEEVDFDGFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFIKPELLTDDNA 727 (1042)
Q Consensus 648 ~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~ 727 (1042)
.+|++||+.|+++|.|++++
T Consensus 319 -----------------------------------------------------------~sl~~~L~~~~~~E~l~~~~- 338 (476)
T 3mhs_A 319 -----------------------------------------------------------KKLYECLDSFHKKEQLKDFN- 338 (476)
T ss_dssp -----------------------------------------------------------CBHHHHHHHHHCCEECSSCC-
T ss_pred -----------------------------------------------------------HHHHHHHHHHCCHHHCCCCC-
T ss_conf -----------------------------------------------------------68999999863842214778-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10765226789999999998532038754479988777654587654445545687777887310000001236998777
Q 001627 728 WDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDVDSLCNGDAKTNNDLNTFCESLVSQSGKTDCF 807 (1042)
Q Consensus 728 ~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1042)
|+|++|..
T Consensus 339 ~~C~~C~~------------------------------------------------------------------------ 346 (476)
T 3mhs_A 339 YHCGECNS------------------------------------------------------------------------ 346 (476)
T ss_dssp CEETTTTE------------------------------------------------------------------------
T ss_pred CCCCCCCC------------------------------------------------------------------------
T ss_conf 76886688------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 76589998645542076478644794312441446877651568886311244543033115998988764322357763
Q 001627 808 NQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQ 887 (1042)
Q Consensus 808 ~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~c~~~s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 887 (1042)
T Consensus 347 -------------------------------------------------------------------------------- 346 (476)
T 3mhs_A 347 -------------------------------------------------------------------------------- 346 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-
Q ss_conf 0036554520012210121126422159999823379927999804323846861234542540620136999999999-
Q 001627 888 LVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFSEIINLRPYMDPGCT- 966 (1042)
Q Consensus 888 ~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~~~~~Ki~~~V~fp~~LdL~~~~~~~~~- 966 (1042)
++.++|+..|.+||+||+|||+||.++..+...|+...|.||..|||.+|+.....
T Consensus 347 -----------------------~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~ 403 (476)
T 3mhs_A 347 -----------------------TQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKD 403 (476)
T ss_dssp -----------------------ECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCC
T ss_pred -----------------------CCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCEEECCCCEEECHHHCCCCCCC
T ss_conf -----------------------565789987014971139984402154899717898787389700034323753234
Q ss_pred ------CCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHCCCCCEEEEEE
Q ss_conf ------99983069999999837458872999997799773233355579908999296003634323348992999999
Q 001627 967 ------DHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYE 1040 (1042)
Q Consensus 967 ------~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~eev~~~~aYiLfYe 1040 (1042)
......|+|+|||+|.|++++|||++|+|.. +++||+|||+.|+++++++|+..+||||||+
T Consensus 404 ~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~------------~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~ 471 (476)
T 3mhs_A 404 KHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS------------GGQWFKFNDSMVSSISQEEVLKEQAYLLFYT 471 (476)
T ss_dssp C--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT------------TSCEEEEETTEEEEECHHHHTTSCEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECC------------CCCEEEEECCCEEECCHHHHCCCCCEEEEEE
T ss_conf 3223467899738999999968999887549999889------------8918999498158999899566986799999
Q ss_pred EC
Q ss_conf 79
Q 001627 1041 KI 1042 (1042)
Q Consensus 1041 Rv 1042 (1042)
|.
T Consensus 472 r~ 473 (476)
T 3mhs_A 472 IR 473 (476)
T ss_dssp EE
T ss_pred EE
T ss_conf 84
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=507.78 Aligned_cols=329 Identities=34% Similarity=0.550 Sum_probs=267.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC--------C---CCHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 776323332289851148999998368889999960658--------9---89299999999997189999985248233
Q 001627 225 ACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL--------T---FGPLTIALKKLFAETKPETGLRNVINPRS 293 (1042)
Q Consensus 225 ~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~--------~---~~~l~~~L~~Lf~~l~~~~~~~~~isP~~ 293 (1042)
..++++||.|+||||||||+||||+++|+|+++|+.... + .+.+..+|..||..||... ...++|..
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~ 81 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRM 81 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCHHH
T ss_conf 8989808764885649899999997779999999737225550446988864299999999999997489--98738799
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCC------------CCCCCCCCCCEEEE
Q ss_conf 6987620299999999898799999999999799974203899999--999888------------87543233440899
Q 001627 294 FFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSE--GNGISS------------NQGPVFVDYVFGGQ 359 (1042)
Q Consensus 294 l~~~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~--~~~~~~------------~~~~s~I~~iF~G~ 359 (1042)
|+.+++...+.|.+++||||||||++|||.||+++....+...... ..+.+. ....++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~ 161 (367)
T 2y6e_A 82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGL 161 (367)
T ss_dssp HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 99999974041089878787999999999999998751257764455656796067789999998870698230133768
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999918999977789410428751699999998874014321036999878753234655544433222234443554
Q 001627 360 IASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSK 439 (1042)
Q Consensus 360 l~s~v~C~~C~~~S~~~E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~ 439 (1042)
+.++++|..|+++|.++|+|++|+||||...... .. .
T Consensus 162 l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~-----------------------------------~~---~----- 198 (367)
T 2y6e_A 162 FKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRV-----------------------------------ME---G----- 198 (367)
T ss_dssp EEEEEECTTTCCEEEEEEEESSEEEECCC---------------------------------------------------
T ss_pred EEEEEEECCCCCEEEEECCCEEEEEECCCCCCCC-----------------------------------CE---E-----
T ss_conf 8435890899998533756705773179876775-----------------------------------01---3-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43433456778653224789976644458996223347878899999998886422333112113432111134678876
Q 001627 440 SQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTT 519 (1042)
Q Consensus 440 ~~~k~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1042)
. .+
T Consensus 199 ---------------------------------------------------~----------------~~---------- 201 (367)
T 2y6e_A 199 ---------------------------------------------------P----------------ML---------- 201 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------E----------------EE----------
T ss_conf ---------------------------------------------------3----------------20----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76555444457641014666322134578875444345533466532102479874336300013467776789988767
Q 001627 520 GDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLKA 599 (1042)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1042)
.|.
T Consensus 202 ---------------------------------------------------------~~~-------------------- 204 (367)
T 2y6e_A 202 ---------------------------------------------------------QPQ-------------------- 204 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------CCC--------------------
T ss_conf ---------------------------------------------------------564--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999888643223430100575211233110026876556553247776544567798889975446999999999
Q 001627 600 DSSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSSG 679 (1042)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~ 679 (1042)
.
T Consensus 205 --------------------------------------------------------------------~----------- 205 (367)
T 2y6e_A 205 --------------------------------------------------------------------K----------- 205 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------C-----------
T ss_conf --------------------------------------------------------------------4-----------
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 65457862004689999987779999769999985202334358998410765226789999999998532038754479
Q 001627 680 TESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLING 759 (1042)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1042)
.....+||++||+.|+++|.|+++|.|+|++|.+
T Consensus 206 ----------------------~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~------------------------ 239 (367)
T 2y6e_A 206 ----------------------KKKTTVALRDCIELFTTMETLGEHDPWYCPNCKK------------------------ 239 (367)
T ss_dssp --------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTE------------------------
T ss_pred ----------------------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC------------------------
T ss_conf ----------------------5678888999999861616478998724878788------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98877765458765444554568777788731000000123699877776589998645542076478644794312441
Q 001627 760 GETSNQNDIQGSSLTDVDSLCNGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDA 839 (1042)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~ 839 (1042)
T Consensus 240 -------------------------------------------------------------------------------- 239 (367)
T 2y6e_A 240 -------------------------------------------------------------------------------- 239 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 44687765156888631124454303311599898876432235776300365545200122101211264221599998
Q 001627 840 VEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVL 919 (1042)
Q Consensus 840 ~~~~~~~~c~~~~c~~~s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~ 919 (1042)
++.++|+..
T Consensus 240 -----------------------------------------------------------------------~~~a~K~~~ 248 (367)
T 2y6e_A 240 -----------------------------------------------------------------------HQQATKKFD 248 (367)
T ss_dssp -----------------------------------------------------------------------EECCEEEEE
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
T ss_conf -----------------------------------------------------------------------750789988
Q ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 2337992799980432384686123454254062-013699999999999983069999999837458872999997799
Q 001627 920 INKAPPILTIHLKRFSQDARGRLSKLNGHVNFSE-IINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGP 998 (1042)
Q Consensus 920 I~~lP~vLiIhLkRF~~d~~~~~~Ki~~~V~fp~-~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~ 998 (1042)
|.+||+||+|||+||.|+.. ...|+..+|.||. .|||.+|+.... .....|+|+|||+|.|++++|||+||+|..
T Consensus 249 i~~lP~vL~i~LkRF~~~~~-~~~K~~~~v~fp~~~Ldl~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~- 324 (367)
T 2y6e_A 249 LWSLPKILVVHLKRFSYNRY-WRDKLDTVVEFPIRGLNMSEFVCNLS--ARPYVYDLIAVSNHYGAMGVGHYTAYAKNK- 324 (367)
T ss_dssp EEECCSEEEEEEECEEECSS-CEEECCCCEECCSSCEECGGGBSCSS--SCCCEEEEEEEEEEECSSSSCEEEEEEECT-
T ss_pred EECCCCEEEEEEECEEECCC-CCEECCCEEEECCCCCCHHHHCCCCC--CCCCEEEEEEEEECCCCCCCCEEEEEEECC-
T ss_conf 82488578999847650576-63353763893177677566425878--897148899885628999887366788769-
Q ss_pred CCCCCCCCCCCCCEEEEECCCEEEEECHHHHCCCCCEEEEEEEC
Q ss_conf 77323335557990899929600363432334899299999979
Q 001627 999 KNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 999 ~~~~~~~~~~~~~~W~~fnD~~V~~vs~eev~~~~aYiLfYeRv 1042 (1042)
.+++||+|||+.|+++++++|+..+||||||+|.
T Consensus 325 ----------~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 358 (367)
T 2y6e_A 325 ----------LNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358 (367)
T ss_dssp ----------TTCCEEEEETTEEEECCGGGTSSTTEEEEEEEEC
T ss_pred ----------CCCEEEEECCCCCEECCHHHCCCCCCEEEEEEEC
T ss_conf ----------9990899779873399888868897379999973
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=500.35 Aligned_cols=313 Identities=35% Similarity=0.585 Sum_probs=263.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC-----------CCCHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 9776323332289851148999998368889999960658-----------98929999999999718999998524823
Q 001627 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL-----------TFGPLTIALKKLFAETKPETGLRNVINPR 292 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~-----------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~ 292 (1042)
..+++++||.|+||||||||+||||+++|+|+++|+.... ..+.+..+|..++..+|... ...++|.
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~ 134 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPK 134 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEECHH
T ss_conf 88778666561687416729999853788999999707421331235877741099999999999997099--8437789
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--C------------CCCCCCCCCCCEEE
Q ss_conf 369876202999999998987999999999997999742038999999998--8------------88754323344089
Q 001627 293 SFFGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGI--S------------SNQGPVFVDYVFGG 358 (1042)
Q Consensus 293 ~l~~~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~--~------------~~~~~s~I~~iF~G 358 (1042)
.|+.+++...+.|.+++||||||||++|||.||+++............... . .....++|.++|+|
T Consensus 135 ~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G 214 (396)
T 2gfo_A 135 DFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 214 (396)
T ss_dssp HHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf 99999997454334878877599999999999999865314554455555566425677899987665068834020086
Q ss_pred EEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999991899997778941042875169999999887401432103699987875323465554443322223444355
Q 001627 359 QIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISS 438 (1042)
Q Consensus 359 ~l~s~v~C~~C~~~S~~~E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~ 438 (1042)
++.++++|..|++++.++|+|++|+|+||..
T Consensus 215 ~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~------------------------------------------------- 245 (396)
T 2gfo_A 215 QFKSTVQCLTCHKKSRTFEAFMYLSLPLAST------------------------------------------------- 245 (396)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCSCS-------------------------------------------------
T ss_pred EEEEEEEECCCCCEECCCCCCEEEEECCCCC-------------------------------------------------
T ss_conf 8877788579996203244631233326634-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44343345677865322478997664445899622334787889999999888642233311211343211113467887
Q 001627 439 KSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQT 518 (1042)
Q Consensus 439 ~~~~k~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1042)
T Consensus 246 -------------------------------------------------------------------------------- 245 (396)
T 2gfo_A 246 -------------------------------------------------------------------------------- 245 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67655544445764101466632213457887544434553346653210247987433630001346777678998876
Q 001627 519 TGDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLK 598 (1042)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1042)
T Consensus 246 -------------------------------------------------------------------------------- 245 (396)
T 2gfo_A 246 -------------------------------------------------------------------------------- 245 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999999988864322343010057521123311002687655655324777654456779888997544699999999
Q 001627 599 ADSSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSS 678 (1042)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~ 678 (1042)
T Consensus 246 -------------------------------------------------------------------------------- 245 (396)
T 2gfo_A 246 -------------------------------------------------------------------------------- 245 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 96545786200468999998777999976999998520233435899841076522678999999999853203875447
Q 001627 679 GTESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLIN 758 (1042)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1042)
...+|++||+.|+++|.|+|+|.|+|++|.+
T Consensus 246 --------------------------~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~----------------------- 276 (396)
T 2gfo_A 246 --------------------------SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA----------------------- 276 (396)
T ss_dssp --------------------------SEEEHHHHHHHHTSCEEECSTTCEEETTTTE-----------------------
T ss_pred --------------------------CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC-----------------------
T ss_conf --------------------------6579999999837722516876411577555-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99887776545876544455456877778873100000012369987777658999864554207647864479431244
Q 001627 759 GGETSNQNDIQGSSLTDVDSLCNGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKIND 838 (1042)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f 838 (1042)
T Consensus 277 -------------------------------------------------------------------------------- 276 (396)
T 2gfo_A 277 -------------------------------------------------------------------------------- 276 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 14468776515688863112445430331159989887643223577630036554520012210121126422159999
Q 001627 839 AVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRV 918 (1042)
Q Consensus 839 ~~~~~~~~~c~~~~c~~~s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~ 918 (1042)
++.++|+.
T Consensus 277 ------------------------------------------------------------------------~~~a~k~~ 284 (396)
T 2gfo_A 277 ------------------------------------------------------------------------RRDSLKKI 284 (396)
T ss_dssp ------------------------------------------------------------------------EECEEEEE
T ss_pred ------------------------------------------------------------------------CCCEEEEE
T ss_conf ------------------------------------------------------------------------45358999
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECC
Q ss_conf 8233799279998043238468612345425406-201369999999999998306999999983745887299999779
Q 001627 919 LINKAPPILTIHLKRFSQDARGRLSKLNGHVNFS-EIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGG 997 (1042)
Q Consensus 919 ~I~~lP~vLiIhLkRF~~d~~~~~~Ki~~~V~fp-~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~ 997 (1042)
.|.+||+||+|||+||.|+..+ ..|+...|.|| +.|||.+|+.... .....|+|+|||+|.|++++|||+||+|..
T Consensus 285 ~i~~lP~vLiihLkRF~~~~~~-~~K~~~~v~fp~~~Ldl~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~ 361 (396)
T 2gfo_A 285 EIWKLPPVLLVHLKRFSYDGRW-KQKLQTSVDFPLENLDLSQYVIGPK--NNLKKYNLFSVSNHYGGLDGGHYTAYCKNA 361 (396)
T ss_dssp EEEECCSEEEEEECCEEECSSS-EEECCCEEECCSSCBCCGGGBCSCC--SSCCCBEEEEEEEEESCTTTCEEEEEEEET
T ss_pred EEECCCCEEEEEECCEECCCCC-CEECCCEEECCHHHCCCCCCCCCCC--CCCCEEEEEEEEEECCCCCCCCEEEEECCC
T ss_conf 9803785799985011025761-0016744854534245664334777--787358899999856999998307998579
Q ss_pred CCCCCCCCCCCCCCEEEEECCCEEEEECHHHHCCCCCEEEEEEEC
Q ss_conf 977323335557990899929600363432334899299999979
Q 001627 998 PKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 998 ~~~~~~~~~~~~~~~W~~fnD~~V~~vs~eev~~~~aYiLfYeRv 1042 (1042)
.++.||+|||+.|+++++++|...+||||||+|+
T Consensus 362 -----------~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 395 (396)
T 2gfo_A 362 -----------ARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395 (396)
T ss_dssp -----------TTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred -----------CCCCEEEEECCCEEECCHHHCCCCCCEEEEEEEC
T ss_conf -----------9998799748873898888868998569999975
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=485.14 Aligned_cols=312 Identities=33% Similarity=0.540 Sum_probs=261.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 6323332289851148999998368889999960658--------98929999999999718999998524823369876
Q 001627 227 YVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL--------TFGPLTIALKKLFAETKPETGLRNVINPRSFFGCI 298 (1042)
Q Consensus 227 ~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~--------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~i 298 (1042)
.|++||.|+||||||||+||+|+++|+||++++.... ...++..+|..||..+|.... ...++|..|+.++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~l 79 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAVF 79 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHHH
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHH
T ss_conf 997475889826698999999867899999997254887567899526999999999999845898-8744589999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----------------------------CCCCC
Q ss_conf 2029999999989879999999999979997420389999999988-----------------------------88754
Q 001627 299 CSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGIS-----------------------------SNQGP 349 (1042)
Q Consensus 299 ~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~-----------------------------~~~~~ 349 (1042)
+...+.|.+++||||||||++|||.||+++....+........... .....
T Consensus 80 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 80 QKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred HHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 97384228987667899999999999999765413787523567666764444322357778878899999998523169
Q ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32334408999999991899997778941042875169999999887401432103699987875323465554443322
Q 001627 350 VFVDYVFGGQIASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQ 429 (1042)
Q Consensus 350 s~I~~iF~G~l~s~v~C~~C~~~S~~~E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~ 429 (1042)
++|.++|+|.+.++++|..|++.+.+.|+|++|+|+||....
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~-------------------------------------- 201 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF-------------------------------------- 201 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-----------------------------------------
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCC--------------------------------------
T ss_conf 815453357999558938999984022223465256786444--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22344435544343345677865322478997664445899622334787889999999888642233311211343211
Q 001627 430 SISNLSISSKSQSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDF 509 (1042)
Q Consensus 430 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1042)
.
T Consensus 202 ---------------~---------------------------------------------------------------- 202 (355)
T 3i3t_A 202 ---------------A---------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------C----------------------------------------------------------------
T ss_conf ---------------5----------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11346788767655544445764101466632213457887544434553346653210247987433630001346777
Q 001627 510 WLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIP 589 (1042)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 589 (1042)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67899887678999999988864322343010057521123311002687655655324777654456779888997544
Q 001627 590 LLDSKPNLKADSSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETA 669 (1042)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s 669 (1042)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 69999999996545786200468999998777999976999998520233435899841076522678999999999853
Q 001627 670 IGPVPRPSSGTESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRA 749 (1042)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~ 749 (1042)
...++|++||+.|+++|.|+++|.|+|++|.+
T Consensus 203 ----------------------------------~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~-------------- 234 (355)
T 3i3t_A 203 ----------------------------------GGKVSLRDCFNLFTKEEELESENAPVCDRCRQ-------------- 234 (355)
T ss_dssp -------------------------------------CBHHHHHHHHHCCEEECGGGCCCCSSSCC--------------
T ss_pred ----------------------------------CCCCCHHHHHHHHCCCCCCCCCCCEECCCCCC--------------
T ss_conf ----------------------------------67658999999857835458999855988788--------------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 20387544799887776545876544455456877778873100000012369987777658999864554207647864
Q 001627 750 KLASKPLINGGETSNQNDIQGSSLTDVDSLCNGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQR 829 (1042)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~ 829 (1042)
T Consensus 235 -------------------------------------------------------------------------------- 234 (355)
T 3i3t_A 235 -------------------------------------------------------------------------------- 234 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
Q ss_conf 47943124414468776515688863112445430331159989887643223577630036554520012210121126
Q 001627 830 EKGKMKINDAVEMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVK 909 (1042)
Q Consensus 830 ~~~~i~~~f~~~~~~~~~c~~~~c~~~s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~ 909 (1042)
T Consensus 235 -------------------------------------------------------------------------------- 234 (355)
T 3i3t_A 235 -------------------------------------------------------------------------------- 234 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 4221599998233799279998043238468612345425406-201369999999999998306999999983745887
Q 001627 910 VKRDATKRVLINKAPPILTIHLKRFSQDARGRLSKLNGHVNFS-EIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGG 988 (1042)
Q Consensus 910 ~~~~a~k~~~I~~lP~vLiIhLkRF~~d~~~~~~Ki~~~V~fp-~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sG 988 (1042)
++.++|+..|.++|+||+|||+||.++ .+...|+..+|.|| ..|||.+|+... .....|+|+|||+|.|++++|
T Consensus 235 -~~~a~k~~~i~~lP~vL~i~lkRF~~~-~~~~~K~~~~v~fp~~~l~l~~~~~~~---~~~~~Y~L~avv~H~G~~~~G 309 (355)
T 3i3t_A 235 -KTRSTKKLTVQRFPRILVLHLNRFSAS-RGSIKKSSVGVDFPLQRLSLGDFASDK---AGSPVYQLYALCNHSGSVHYG 309 (355)
T ss_dssp -CCCEEEEEEEEECCSEEEEEECCEECC-SSCCEECCCCCBCCSSCEECGGGBC-------CCEEEEEEEEEEEEETTEE
T ss_pred -CCCEEEEEECCCCCHHEEEEHHHEECC-CCCCEECCCCEECCCCCCCCHHHCCCC---CCCCCEEEEEEEEECCCCCCC
T ss_conf -662379988113981309976020037-898047886160776546730211589---999645999998826789998
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHCCCCCEEEEEEEC
Q ss_conf 299999779977323335557990899929600363432334899299999979
Q 001627 989 HYVAYVRGGPKNKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 989 HYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~V~~vs~eev~~~~aYiLfYeRv 1042 (1042)
||+||+|. .+.||+|||+.|+++++++|+..+||||||+|+
T Consensus 310 HY~~~~~~-------------~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 350 (355)
T 3i3t_A 310 HYTALCRC-------------QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLM 350 (355)
T ss_dssp EEEEEEEE-------------TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC
T ss_pred EEEEEEEC-------------CCEEEEECCCCCEECCHHHCCCCCCEEEEEEEC
T ss_conf 07999972-------------992899819871798899907898679999960
No 6
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=484.71 Aligned_cols=315 Identities=36% Similarity=0.584 Sum_probs=265.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC---------CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 9776323332289851148999998368889999960658---------9892999999999971899999852482336
Q 001627 224 NACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL---------TFGPLTIALKKLFAETKPETGLRNVINPRSF 294 (1042)
Q Consensus 224 ~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~---------~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l 294 (1042)
...++++||.|+||||||||+||+|+++|+||++++.... ...++..+|..||..+|... ....++|..|
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~p~~~ 82 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS-PNDVVSPSEF 82 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC-TTCEECCHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCHHHH
T ss_conf 889999778758834798899999966799999985244667614688731189999999999997178-9872489999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------------CCCCCCCCCCCEEEEE
Q ss_conf 98762029999999989879999999999979997420389999999988--------------8875432334408999
Q 001627 295 FGCICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGIS--------------SNQGPVFVDYVFGGQI 360 (1042)
Q Consensus 295 ~~~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~--------------~~~~~s~I~~iF~G~l 360 (1042)
+.+++...+.|.+++||||||||++|||.||+++................ .....++|.++|+|.+
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 162 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQL 162 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999860640798744799999999999999875304678877522246882277899999987506984555512499
Q ss_pred EEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999189999777894104287516999999988740143210369998787532346555444332222344435544
Q 001627 361 ASTVRCVECGHSSTVYEPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSKS 440 (1042)
Q Consensus 361 ~s~v~C~~C~~~S~~~E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~~ 440 (1042)
.++++|..|++++.+.|+|++|+|+||....
T Consensus 163 ~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------- 193 (348)
T 3nhe_A 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------- 193 (348)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCCSSCS-------------------------------------------------
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCC-------------------------------------------------
T ss_conf 9899948999886444465477642798556-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34334567786532247899766444589962233478788999999988864223331121134321111346788767
Q 001627 441 QSLTESTAPLSENVVSSSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTG 520 (1042)
Q Consensus 441 ~~k~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1042)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65554444576410146663221345788754443455334665321024798743363000134677767899887678
Q 001627 521 DVLDSTWQKSDVSVIQDSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLKAD 600 (1042)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1042)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998886432234301005752112331100268765565532477765445677988899754469999999996
Q 001627 601 SSSGDAGEDELPLVVQDSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSSGT 680 (1042)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~ 680 (1042)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 54578620046899999877799997699999852023343589984107652267899999999985320387544799
Q 001627 681 ESVGSGFVVGNSSDSDPDEVDDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGG 760 (1042)
Q Consensus 681 ~~~~~~~~~~~~~~~~~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1042)
..++|++||+.|+++|.|+|+|.|+|++|.+
T Consensus 194 ------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~------------------------- 224 (348)
T 3nhe_A 194 ------------------------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRG------------------------- 224 (348)
T ss_dssp ------------------------SCEEHHHHHHHHHSCEEECGGGCCEETTTTE-------------------------
T ss_pred ------------------------CCCCHHHHHHHHCCCEEECCCCCEECCCCCC-------------------------
T ss_conf ------------------------7778999998746805716888567888888-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
Q ss_conf 88777654587654445545687777887310000001236998777765899986455420764786447943124414
Q 001627 761 ETSNQNDIQGSSLTDVDSLCNGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAV 840 (1042)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~ 840 (1042)
T Consensus 225 -------------------------------------------------------------------------------- 224 (348)
T 3nhe_A 225 -------------------------------------------------------------------------------- 224 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEEE
Q ss_conf 46877651568886311244543033115998988764322357763003655452001221012112642215999982
Q 001627 841 EMQSRSSCLRDSCSQESITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLI 920 (1042)
Q Consensus 841 ~~~~~~~c~~~~c~~~s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~I 920 (1042)
++.+.|+..|
T Consensus 225 ----------------------------------------------------------------------~~~~~k~~~i 234 (348)
T 3nhe_A 225 ----------------------------------------------------------------------RKRCIKKFSI 234 (348)
T ss_dssp ----------------------------------------------------------------------ECCEEEEEEE
T ss_pred ----------------------------------------------------------------------CCCEEEEEEE
T ss_conf ----------------------------------------------------------------------5648999881
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 33799279998043238468612345425406-20136999999999999830699999998374588729999977997
Q 001627 921 NKAPPILTIHLKRFSQDARGRLSKLNGHVNFS-EIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPK 999 (1042)
Q Consensus 921 ~~lP~vLiIhLkRF~~d~~~~~~Ki~~~V~fp-~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~~ 999 (1042)
.++|+||+|||+||.++. +...|+...|.|| ..|||.+|+.... ....|+|+|||+|.|++++|||+||+|.+
T Consensus 235 ~~lP~vL~i~lkRf~~~~-~~~~K~~~~v~fp~~~ldl~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~~~~-- 308 (348)
T 3nhe_A 235 QRFPKILVLHLKRFSESR-IRTSKLTTFVNFPLRDLDLREFASENT---NHAVYNLYAVSNHSGTTMGGHYTAYCRSP-- 308 (348)
T ss_dssp EECCSEEEEEECCBCCCS-SCCCBCCCCEECCSSCEECGGGBCTTC---CCCEEEEEEEEEEEECSSCEEEEEEEECT--
T ss_pred ECCCCEEEEEEECCCCCC-CCEEECCCCEECCCCCCCHHHHCCCCC---CCCCEEEEEEEECCCCCCCCCCEEEECCC--
T ss_conf 329865799987534567-741456862303477587766067888---99867999999704899996438888169--
Q ss_pred CCCCCCCCCCCCEEEEECCCEEEEECHHHHCCCCCEEEEEEEC
Q ss_conf 7323335557990899929600363432334899299999979
Q 001627 1000 NKVKAKKESVGGVWYHASDVYVREVSLEEVLRCEAYILFYEKI 1042 (1042)
Q Consensus 1000 ~~~~~~~~~~~~~W~~fnD~~V~~vs~eev~~~~aYiLfYeRv 1042 (1042)
.++.||+|||+.|++++.++|...+||||||+|+
T Consensus 309 ---------~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~ 342 (348)
T 3nhe_A 309 ---------GTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELA 342 (348)
T ss_dssp ---------TTCCEEEEETTEEEEECGGGTCCTTEEEEEEEEC
T ss_pred ---------CCCCEEEEECCCCEECCHHHCCCCCCEEEEEEEC
T ss_conf ---------9893799838980699888857898369999964
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=474.85 Aligned_cols=292 Identities=27% Similarity=0.429 Sum_probs=251.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 76323332289851148999998368889999960658----98929999999999718999998524823369876202
Q 001627 226 CYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL----TFGPLTIALKKLFAETKPETGLRNVINPRSFFGCICSK 301 (1042)
Q Consensus 226 ~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~----~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~~i~~~ 301 (1042)
.++++||.|+||||||||+||+|+++|+||++++.... ...++..+|+.+|..|+... ..++|..|+..+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~-- 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG-- 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT--
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHHCC--
T ss_conf 88998756474544989999999777999999983787777654409999999999886058---8778779986418--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 99999999898799999999999799974203899999999888875432334408999999991899997778941042
Q 001627 302 APQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVYEPFLD 381 (1042)
Q Consensus 302 ~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~~~~~s~I~~iF~G~l~s~v~C~~C~~~S~~~E~F~d 381 (1042)
++.|.++.||||||||++|||.|++++... ...++|.++|+|.+.++++|..|++.|.+.|+|++
T Consensus 78 ~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~---------------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~ 142 (353)
T 1nb8_A 78 WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYD 142 (353)
T ss_dssp CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS---------------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---------------CCCCHHHHHCEEEEEEEEEECCCCCEECEEEEEEE
T ss_conf 877786532639999999999999884488---------------75551235030589999992568970022223279
Q ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87516999999988740143210369998787532346555444332222344435544343345677865322478997
Q 001627 382 LSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSKSQSLTESTAPLSENVVSSSGGS 461 (1042)
Q Consensus 382 LSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~s 461 (1042)
|+|+||..
T Consensus 143 LsL~i~~~------------------------------------------------------------------------ 150 (353)
T 1nb8_A 143 IQLSIKGK------------------------------------------------------------------------ 150 (353)
T ss_dssp EEECCTTC------------------------------------------------------------------------
T ss_pred EEEEECCC------------------------------------------------------------------------
T ss_conf 98897997------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66444589962233478788999999988864223331121134321111346788767655544445764101466632
Q 001627 462 QLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQDSTDF 541 (1042)
Q Consensus 462 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 21345788754443455334665321024798743363000134677767899887678999999988864322343010
Q 001627 542 AWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLKADSSSGDAGEDELPLVVQDSEVI 621 (1042)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 05752112331100268765565532477765445677988899754469999999996545786200468999998777
Q 001627 622 LLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSDPDEVD 701 (1042)
Q Consensus 622 ~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 701 (1042)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997699999852023343589984107652267899999999985320387544799887776545876544455456
Q 001627 702 DSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDVDSLCN 781 (1042)
Q Consensus 702 ~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 781 (1042)
.+|++||..|+++|.|+++|.|.|+.|++
T Consensus 151 -----~~l~~~L~~~~~~E~l~~~~~~~C~~c~~---------------------------------------------- 179 (353)
T 1nb8_A 151 -----KNIFESFVDYVAVEQLDGDNKYDAGEHGL---------------------------------------------- 179 (353)
T ss_dssp -----SBHHHHHHHHTCCEEECTTTCEECGGGCE----------------------------------------------
T ss_pred -----CCHHHHHHHHHCCCCCCCCCCCCCCCCCC----------------------------------------------
T ss_conf -----64577999851734247875314776751----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 87777887310000001236998777765899986455420764786447943124414468776515688863112445
Q 001627 782 GDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQESITDQ 861 (1042)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~c~~~s~~~~ 861 (1042)
T Consensus 180 -------------------------------------------------------------------------------- 179 (353)
T 1nb8_A 180 -------------------------------------------------------------------------------- 179 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCC-CC
Q ss_conf 43033115998988764322357763003655452001221012112642215999982337992799980432384-68
Q 001627 862 DEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQDA-RG 940 (1042)
Q Consensus 862 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~I~~lP~vLiIhLkRF~~d~-~~ 940 (1042)
+.++|+..|.+||+||+|||+||.|+. .+
T Consensus 180 --------------------------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 209 (353)
T 1nb8_A 180 --------------------------------------------------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTD 209 (353)
T ss_dssp --------------------------------------------------ECEEEEEEESCCCSEEEEEECCCC------
T ss_pred --------------------------------------------------EEEEEEEEHHCCCCCEEEEEECEEEECCCC
T ss_conf --------------------------------------------------756898884009972599983679842359
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCE
Q ss_conf 61234542540620136999999999999830699999998374588729999977997732333555799089992960
Q 001627 941 RLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYHASDVY 1020 (1042)
Q Consensus 941 ~~~Ki~~~V~fp~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~fnD~~ 1020 (1042)
...|+..+|.||..|||.+|+.... ......|+|+|||+|.|++++|||+||+|.. .++.||+|||+.
T Consensus 210 ~~~K~~~~v~fp~~Ldl~~~~~~~~-~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~-----------~~~~W~~fnD~~ 277 (353)
T 1nb8_A 210 QNIKINDRFEFPEQLPLDEFLQKTD-PKDPANYILHAVLVHSGDNHGGHYVVYLNPK-----------GDGKWCKFDDDV 277 (353)
T ss_dssp --CCCCCCCBCCSEEECGGGBSSCC-TTSCCEEEEEEEEEEESSTTCCCEEEEECTT-----------SSSCCEEEETTE
T ss_pred CEEECCCEEECCCEEEHHHHHCCCC-CCCCCEEEEEEEEEEECCCCCCEEEEEEECC-----------CCCCEEEEECCC
T ss_conf 5075582897797665235221337-8998159999999974789886799999459-----------999889998960
Q ss_pred EEEECHHHHCC---------------CCCEEEEEEEC
Q ss_conf 03634323348---------------99299999979
Q 001627 1021 VREVSLEEVLR---------------CEAYILFYEKI 1042 (1042)
Q Consensus 1021 V~~vs~eev~~---------------~~aYiLfYeRv 1042 (1042)
|++++.++|+. .+||||||+|.
T Consensus 278 V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 278 VSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp EEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred EEECCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 2897889998872389765444676880799999988
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=473.84 Aligned_cols=297 Identities=27% Similarity=0.427 Sum_probs=254.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 8999776323332289851148999998368889999960658----989299999999997189999985248233698
Q 001627 221 LDGNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAEL----TFGPLTIALKKLFAETKPETGLRNVINPRSFFG 296 (1042)
Q Consensus 221 ~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~----~~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~ 296 (1042)
.+....++++||.|+||||||||+||+|+++|+||++++.... ...++..+|+.||..|+... ..+.|..|+.
T Consensus 167 ~~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~ 243 (522)
T 2f1z_A 167 WDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTK 243 (522)
T ss_dssp CCTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHH
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCHHHHH
T ss_conf 7765567854411386318888999998612999999960665677656528999999999986379---8557678886
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEE
Q ss_conf 76202999999998987999999999997999742038999999998888754323344089999999918999977789
Q 001627 297 CICSKAPQFKGYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIASTVRCVECGHSSTVY 376 (1042)
Q Consensus 297 ~i~~~~p~F~~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~~~~~s~I~~iF~G~l~s~v~C~~C~~~S~~~ 376 (1042)
.+. ++.|.++.||||||||++|||.|++++... ...++|.++|+|++.++++|..|++.+.+.
T Consensus 244 ~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~---------------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~ 306 (522)
T 2f1z_A 244 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRR 306 (522)
T ss_dssp HTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS---------------TTTTHHHHHHCEEEEEEECCSSSCCCCCEE
T ss_pred HCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---------------CCCCCHHHHEEEEEEEEEECCCCCCEEEEE
T ss_conf 418--765787626469999999999998641588---------------656602131337999988727899555366
Q ss_pred EEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41042875169999999887401432103699987875323465554443322223444355443433456778653224
Q 001627 377 EPFLDLSLPVPTKKAPSKKTQPASRAKKTKLPPKKSGRIRAKGTKDTHAVTTQSISNLSISSKSQSLTESTAPLSENVVS 456 (1042)
Q Consensus 377 E~F~dLSLpIp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 456 (1042)
|+|++|+|+||..
T Consensus 307 e~f~~LsL~i~~~------------------------------------------------------------------- 319 (522)
T 2f1z_A 307 EDYYDIQLSIKGK------------------------------------------------------------------- 319 (522)
T ss_dssp EEESCEEECCTTC-------------------------------------------------------------------
T ss_pred EEEEEEEEEECCC-------------------------------------------------------------------
T ss_conf 3207898884786-------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78997664445899622334787889999999888642233311211343211113467887676555444457641014
Q 001627 457 SSGGSQLLDSVGSPTVATQCGSALQNVPADPLPQHDQVIDIPVEQTVASLDDFWLDYIEPQTTGDVLDSTWQKSDVSVIQ 536 (1042)
Q Consensus 457 ~~~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1042)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66632213457887544434553346653210247987433630001346777678998876789999999888643223
Q 001627 537 DSTDFAWLDYIEPETISDEHGLTLENNDVLFVQDSGEQDEVSDDSLINSNQIPLLDSKPNLKADSSSGDAGEDELPLVVQ 616 (1042)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1042)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 43010057521123311002687655655324777654456779888997544699999999965457862004689999
Q 001627 617 DSEVILLPYNEEISTTAEKISGEGEASSSVVGCRQEEVDFDGFGDLFNEPETAIGPVPRPSSGTESVGSGFVVGNSSDSD 696 (1042)
Q Consensus 617 ~~~~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1042)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98777999976999998520233435899841076522678999999999853203875447998877765458765444
Q 001627 697 PDEVDDSDSPVSVESCLVHFIKPELLTDDNAWDCESCSKTLQRQKLEALKRRAKLASKPLINGGETSNQNDIQGSSLTDV 776 (1042)
Q Consensus 697 ~d~~~~~~s~~sie~cL~~~~~~E~l~~~~~~~Ce~Cs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1042)
.+|++||..|+++|.|.++|.|.|+.|++
T Consensus 320 ----------~~l~~~L~~~~~~E~l~~~n~~~C~~c~~----------------------------------------- 348 (522)
T 2f1z_A 320 ----------KNIFESFVDYVAVEQLDGDNKYDAGEHGL----------------------------------------- 348 (522)
T ss_dssp ----------CBHHHHHHHHTCEEEECTTSCBCCGGGCS-----------------------------------------
T ss_pred ----------CCCHHHHHHHHCEEECCCCCEEECCCCCC-----------------------------------------
T ss_conf ----------44067998740502227762040476776-----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 55456877778873100000012369987777658999864554207647864479431244144687765156888631
Q 001627 777 DSLCNGDAKTNNDLNTFCESLVSQSGKTDCFNQDCAEVESGLTNDVNPAVPQREKGKMKINDAVEMQSRSSCLRDSCSQE 856 (1042)
Q Consensus 777 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~QDa~Ef~~~l~~~l~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~c~~~ 856 (1042)
T Consensus 349 -------------------------------------------------------------------------------- 348 (522)
T 2f1z_A 349 -------------------------------------------------------------------------------- 348 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 12445430331159989887643223577630036554520012210121126422159999823379927999804323
Q 001627 857 SITDQDEGSCSVDGATSSGYSAEKVYQSDSQLVAGNCESEESKVEEINSKIVKVKRDATKRVLINKAPPILTIHLKRFSQ 936 (1042)
Q Consensus 857 s~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~C~~C~~~~~a~k~~~I~~lP~vLiIhLkRF~~ 936 (1042)
+.|+|+..|.+||+||+|||+||.|
T Consensus 349 -------------------------------------------------------~~a~k~~~i~~lP~vL~i~LkRF~~ 373 (522)
T 2f1z_A 349 -------------------------------------------------------QEAEKGVKFLTLPPVLHLQLMRFMY 373 (522)
T ss_dssp -------------------------------------------------------BCEEEEEEESCCCSEEEEEECCEEE
T ss_pred -------------------------------------------------------CCEEEEEEEECCCCEEEEEEEEEEE
T ss_conf -------------------------------------------------------5367999934199638999874788
Q ss_pred CC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 84-68612345425406201369999999999998306999999983745887299999779977323335557990899
Q 001627 937 DA-RGRLSKLNGHVNFSEIINLRPYMDPGCTDHDNYDYRLVGVVEHLGTMRGGHYVAYVRGGPKNKVKAKKESVGGVWYH 1015 (1042)
Q Consensus 937 d~-~~~~~Ki~~~V~fp~~LdL~~~~~~~~~~~~~~~Y~L~aVI~H~Gs~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~ 1015 (1042)
+. .+...|++.+|.||..|||.+|+.... ......|+|+|||+|.|++++|||+||+|.. .+++||+
T Consensus 374 ~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~-----------~~~~W~~ 441 (522)
T 2f1z_A 374 DPQTDQNIKINDRFEFPEQLPLDEFLQKTD-PKDPANYILHAVLVHSGDNHGGHYVVYLNPK-----------GDGKWCK 441 (522)
T ss_dssp CSSSSCEEECCCCCBCCSEEECGGGBSSCC-TTSCCEEEEEEEEEEECSSSCSEEEEEECTT-----------SSSCCEE
T ss_pred CCCCCCCEECCCEEECCCEECCHHHHCCCC-CCCCCEEEEEEEEEECCCCCCCEEEEEEECC-----------CCCCEEE
T ss_conf 166785267682796788134435405446-8998379999999964569986689999438-----------9998999
Q ss_pred ECCCEEEEECHHHHCC---------------CCCEEEEEEEC
Q ss_conf 9296003634323348---------------99299999979
Q 001627 1016 ASDVYVREVSLEEVLR---------------CEAYILFYEKI 1042 (1042)
Q Consensus 1016 fnD~~V~~vs~eev~~---------------~~aYiLfYeRv 1042 (1042)
|||+.|++++.++|+. .+||||||+|.
T Consensus 442 fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 442 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp EETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred EECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 978324899899998863388754334576893499999988
No 9
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=469.78 Aligned_cols=160 Identities=24% Similarity=0.351 Sum_probs=130.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC---------CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 763233322898511489999983688899999606589---------89299999999997189999985248233698
Q 001627 226 CYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELT---------FGPLTIALKKLFAETKPETGLRNVINPRSFFG 296 (1042)
Q Consensus 226 ~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~~---------~~~l~~~L~~Lf~~l~~~~~~~~~isP~~l~~ 296 (1042)
...++||.|+||||||||+||+|+|+|+||++++..... ..++.++|+.||..|+.. ...++|..|+.
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~---~~~v~P~~~~~ 87 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT---SSSIPPIILLQ 87 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH---CSEECCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHH
T ss_conf 699988654770439899999987689999999964510134788885438999999999998638---98388699999
Q ss_pred HHHHCCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 7620299999------9998987999999999997999742038999----99999888875432334408999999991
Q 001627 297 CICSKAPQFK------GYQQHDSHELLRCLLDGLCSEELAFRKRNSP----SEGNGISSNQGPVFVDYVFGGQIASTVRC 366 (1042)
Q Consensus 297 ~i~~~~p~F~------~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~----~~~~~~~~~~~~s~I~~iF~G~l~s~v~C 366 (1042)
+++...|.|. ++.||||||||++|||.||+++......... ...+........++|+++|+|.+.++++|
T Consensus 88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C 167 (404)
T 2ayn_A 88 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKC 167 (404)
T ss_dssp HHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEE
T ss_pred HHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCEEEEEEEEE
T ss_conf 99885700202356788665489999999999999874435677522100122100000113760245156799999982
Q ss_pred CCCCCEE--EEEEEEEEEEEECCC
Q ss_conf 8999977--789410428751699
Q 001627 367 VECGHSS--TVYEPFLDLSLPVPT 388 (1042)
Q Consensus 367 ~~C~~~S--~~~E~F~dLSLpIp~ 388 (1042)
..|++++ .+.|+|++|+|+||.
T Consensus 168 ~~C~~~s~s~~~e~f~~Lsl~i~~ 191 (404)
T 2ayn_A 168 TESEEEEVTKGKENQLQLSCFINQ 191 (404)
T ss_dssp SSSCCCCCBCCEEEESSEEEECSS
T ss_pred CCCCCCCCCEEECCCCEEEEECCC
T ss_conf 578981685242257468765699
No 10
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=461.95 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=127.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCC-------------CHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9977632333228985114899999836888999996065898-------------929999999999718999998524
Q 001627 223 GNACYVVRGLANLGNTCFFNSVMQNLLAMSQLQDYFLNAELTF-------------GPLTIALKKLFAETKPETGLRNVI 289 (1042)
Q Consensus 223 ~~~~~~~~GL~NlGNTCYmNSVLQ~L~~~p~lr~~ll~~~~~~-------------~~l~~~L~~Lf~~l~~~~~~~~~i 289 (1042)
.....+++||.|+||||||||+||+|+++|+||++++...... .++.++|+.||..|+... ...+
T Consensus 18 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v 95 (415)
T 1vjv_A 18 QQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSV 95 (415)
T ss_dssp -CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEE
T ss_pred CCCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCC
T ss_conf 43578988877388513999999999747999999971265446677643344411389999999999986079--9843
Q ss_pred CCHHHHHHHHHCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 82336987620299999-------99989879999999999979997420389999999988887543233440899999
Q 001627 290 NPRSFFGCICSKAPQFK-------GYQQHDSHELLRCLLDGLCSEELAFRKRNSPSEGNGISSNQGPVFVDYVFGGQIAS 362 (1042)
Q Consensus 290 sP~~l~~~i~~~~p~F~-------~~~QQDAhEFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~~~~~s~I~~iF~G~l~s 362 (1042)
+|..|+.+++...|.|. ++.||||||||++||+.|++++.. ++|+++|+ .+.+
T Consensus 96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------------~~i~~~F~-~~~~ 155 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------------KFSEDFRI-QFKT 155 (415)
T ss_dssp CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------------HHHTTTCE-EEEE
T ss_pred CHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-------------------CHHHHHHH-HHEE
T ss_conf 779999999875850210466777766668999999999999987343-------------------46999998-6117
Q ss_pred EEEECCCCCEE--EEEEEEEEEEEECCC
Q ss_conf 99918999977--789410428751699
Q 001627 363 TVRCVECGHSS--TVYEPFLDLSLPVPT 388 (1042)
Q Consensus 363 ~v~C~~C~~~S--~~~E~F~dLSLpIp~ 388 (1042)
+++|..|++++ .+.|+|++|+|+||.
T Consensus 156 ~~~C~~C~~~s~s~~~e~f~~Lsl~i~~ 183 (415)
T 1vjv_A 156 TIKDTANDNDITVKENESDSKLQCHISG 183 (415)
T ss_dssp EEEETTEEEEEEEECCCEESCEEECCCT
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 9997799987463135454366512566
Done!