Query 001628
Match_columns 1042
No_of_seqs 724 out of 3781
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 2E-41 4.4E-46 369.3 43.8 470 38-651 62-543 (775)
2 KOG0318 WD40 repeat stress pro 100.0 1E-39 2.2E-44 342.7 48.4 470 31-643 51-560 (603)
3 KOG0271 Notchless-like WD40 re 100.0 3.2E-41 7E-46 340.3 30.8 363 75-641 111-479 (480)
4 KOG0291 WD40-repeat-containing 100.0 3.8E-38 8.2E-43 343.5 55.1 529 25-774 38-622 (893)
5 KOG0271 Notchless-like WD40 re 100.0 2E-40 4.4E-45 334.5 30.5 370 25-590 97-479 (480)
6 KOG0318 WD40 repeat stress pro 100.0 6.8E-37 1.5E-41 321.5 48.2 461 36-643 101-602 (603)
7 KOG0319 WD40-repeat-containing 100.0 2.2E-36 4.7E-41 330.1 39.0 470 37-643 104-619 (775)
8 KOG0291 WD40-repeat-containing 100.0 3.9E-33 8.5E-38 304.5 58.9 587 28-818 4-614 (893)
9 KOG0306 WD40-repeat-containing 100.0 2E-34 4.3E-39 314.4 46.4 601 49-773 33-677 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.3E-34 2.8E-39 315.8 37.7 447 38-643 65-664 (888)
11 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-35 8.8E-40 300.8 24.3 284 34-527 171-458 (459)
12 KOG0272 U4/U6 small nuclear ri 100.0 5E-34 1.1E-38 292.8 24.3 281 79-590 174-458 (459)
13 KOG0273 Beta-transducin family 100.0 2.4E-32 5.1E-37 284.0 31.7 334 35-592 175-523 (524)
14 KOG0276 Vesicle coat complex C 100.0 6.3E-31 1.4E-35 281.3 42.4 469 37-814 12-489 (794)
15 KOG0286 G-protein beta subunit 100.0 3.3E-31 7.1E-36 259.8 32.6 210 25-261 43-260 (343)
16 KOG0286 G-protein beta subunit 100.0 1.2E-30 2.7E-35 255.7 32.3 292 73-590 49-343 (343)
17 KOG0315 G-protein beta subunit 100.0 1.6E-30 3.4E-35 249.1 30.8 278 51-533 11-292 (311)
18 KOG1408 WD40 repeat protein [F 100.0 2.6E-29 5.5E-34 271.9 40.5 608 25-821 21-718 (1080)
19 KOG0279 G protein beta subunit 100.0 5.8E-30 1.3E-34 249.8 31.3 299 114-643 8-313 (315)
20 KOG0279 G protein beta subunit 100.0 1.4E-29 3.1E-34 247.1 32.9 205 35-262 12-224 (315)
21 KOG0296 Angio-associated migra 100.0 2.5E-29 5.4E-34 254.0 33.7 340 70-643 55-398 (399)
22 KOG0292 Vesicle coat complex C 100.0 1.2E-28 2.6E-33 273.1 41.6 292 39-532 10-324 (1202)
23 KOG0315 G-protein beta subunit 100.0 3.2E-29 6.9E-34 240.2 31.1 288 134-653 11-298 (311)
24 KOG0296 Angio-associated migra 100.0 5.1E-29 1.1E-33 251.8 33.1 342 29-592 55-398 (399)
25 KOG0273 Beta-transducin family 100.0 2.8E-29 6E-34 261.2 30.4 322 79-643 177-523 (524)
26 KOG2106 Uncharacterized conser 100.0 7.6E-27 1.6E-31 244.5 48.6 406 35-643 101-521 (626)
27 KOG1539 WD repeat protein [Gen 100.0 2.2E-27 4.9E-32 262.9 46.1 455 36-652 74-615 (910)
28 KOG0276 Vesicle coat complex C 100.0 3.6E-28 7.9E-33 260.3 37.8 283 79-588 12-295 (794)
29 KOG1408 WD40 repeat protein [F 100.0 1.2E-27 2.6E-32 259.1 42.0 573 26-766 62-715 (1080)
30 KOG1539 WD repeat protein [Gen 100.0 6.2E-28 1.3E-32 267.3 38.9 470 41-642 162-647 (910)
31 KOG0284 Polyadenylation factor 100.0 4.1E-30 8.8E-35 262.8 17.5 198 38-261 96-295 (464)
32 KOG0645 WD40 repeat protein [G 100.0 7.3E-28 1.6E-32 234.1 31.3 208 34-261 10-226 (312)
33 KOG2048 WD40 repeat protein [G 100.0 4.4E-26 9.5E-31 247.9 47.6 483 26-648 12-510 (691)
34 KOG0263 Transcription initiati 100.0 1E-28 2.2E-33 274.0 27.1 261 116-593 373-650 (707)
35 KOG0292 Vesicle coat complex C 100.0 2.6E-27 5.6E-32 262.7 37.8 312 80-592 9-321 (1202)
36 KOG0645 WD40 repeat protein [G 100.0 1.6E-27 3.4E-32 231.8 31.4 298 114-643 7-311 (312)
37 KOG0263 Transcription initiati 100.0 1.4E-28 2.9E-33 273.0 27.4 201 36-262 376-609 (707)
38 KOG0284 Polyadenylation factor 100.0 2.8E-29 6.1E-34 256.7 19.8 287 77-593 93-381 (464)
39 KOG0285 Pleiotropic regulator 100.0 1.2E-27 2.7E-32 240.3 26.3 201 35-262 148-350 (460)
40 KOG1063 RNA polymerase II elon 100.0 1.7E-25 3.6E-30 243.4 40.9 493 33-650 49-657 (764)
41 PLN00181 protein SPA1-RELATED; 100.0 3.1E-26 6.7E-31 284.7 40.0 317 59-591 457-792 (793)
42 KOG1983 Tomosyn and related SN 100.0 9.9E-26 2.1E-30 274.8 43.3 880 11-1040 8-990 (993)
43 KOG0285 Pleiotropic regulator 100.0 3E-27 6.4E-32 237.5 24.0 291 114-643 144-439 (460)
44 KOG0295 WD40 repeat-containing 100.0 6.1E-27 1.3E-31 236.6 25.8 325 51-591 77-405 (406)
45 KOG0265 U5 snRNP-specific prot 100.0 2.8E-26 6.2E-31 226.3 27.2 295 114-639 40-334 (338)
46 KOG0293 WD40 repeat-containing 100.0 1.4E-26 3E-31 236.9 25.3 200 35-261 221-426 (519)
47 PLN00181 protein SPA1-RELATED; 100.0 1.9E-25 4.1E-30 277.7 40.8 201 36-261 481-691 (793)
48 cd00200 WD40 WD40 domain, foun 100.0 2.5E-25 5.4E-30 243.0 36.8 200 36-261 7-208 (289)
49 KOG0266 WD40 repeat-containing 100.0 6.7E-26 1.4E-30 261.3 32.9 201 36-262 157-366 (456)
50 KOG0265 U5 snRNP-specific prot 99.9 1.3E-25 2.7E-30 221.7 28.3 204 31-261 40-247 (338)
51 KOG0295 WD40 repeat-containing 99.9 3.3E-26 7.2E-31 231.3 24.5 283 35-528 105-405 (406)
52 cd00200 WD40 WD40 domain, foun 99.9 6E-25 1.3E-29 240.0 35.3 286 116-641 4-289 (289)
53 KOG0293 WD40 repeat-containing 99.9 3.9E-26 8.4E-31 233.6 22.2 295 113-643 216-513 (519)
54 KOG0282 mRNA splicing factor [ 99.9 5.4E-26 1.2E-30 238.1 19.8 293 70-590 205-503 (503)
55 KOG0266 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 250.2 33.2 296 72-592 151-454 (456)
56 KOG0282 mRNA splicing factor [ 99.9 1E-25 2.3E-30 235.9 20.2 208 29-261 203-416 (503)
57 KOG0281 Beta-TrCP (transducin 99.9 4.4E-26 9.5E-31 227.9 16.2 286 78-596 195-481 (499)
58 KOG2106 Uncharacterized conser 99.9 5.9E-23 1.3E-27 215.5 39.3 418 39-642 201-625 (626)
59 KOG0281 Beta-TrCP (transducin 99.9 1.4E-25 2.9E-30 224.4 15.8 190 40-262 199-390 (499)
60 KOG0316 Conserved WD40 repeat- 99.9 4.6E-24 1E-28 203.1 24.9 292 110-642 6-298 (307)
61 KOG0313 Microtubule binding pr 99.9 5.6E-24 1.2E-28 216.3 27.0 213 33-261 100-331 (423)
62 KOG0772 Uncharacterized conser 99.9 2.3E-24 4.9E-29 226.6 24.8 313 115-641 161-485 (641)
63 KOG2048 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 212.3 46.9 472 80-816 25-505 (691)
64 PF08596 Lgl_C: Lethal giant l 99.9 1.9E-23 4.2E-28 231.1 30.1 316 501-835 3-357 (395)
65 KOG0316 Conserved WD40 repeat- 99.9 1.4E-23 3.1E-28 199.9 24.2 251 175-653 15-267 (307)
66 KOG0275 Conserved WD40 repeat- 99.9 2.6E-24 5.6E-29 213.2 19.3 162 77-262 210-380 (508)
67 KOG1063 RNA polymerase II elon 99.9 6.3E-22 1.4E-26 215.8 39.3 556 35-764 11-699 (764)
68 KOG0288 WD40 repeat protein Ti 99.9 1E-24 2.2E-29 223.9 16.7 291 114-640 168-458 (459)
69 KOG0643 Translation initiation 99.9 4.1E-23 9E-28 200.5 26.5 303 75-593 6-318 (327)
70 KOG0640 mRNA cleavage stimulat 99.9 7.9E-24 1.7E-28 209.0 22.0 207 36-263 110-338 (430)
71 KOG0313 Microtubule binding pr 99.9 2.2E-23 4.8E-28 212.0 25.7 317 114-642 98-417 (423)
72 KOG0277 Peroxisomal targeting 99.9 1.2E-23 2.6E-28 202.8 21.9 282 85-591 13-308 (311)
73 KOG0278 Serine/threonine kinas 99.9 6.9E-24 1.5E-28 203.5 19.4 203 32-261 8-214 (334)
74 KOG1407 WD40 repeat protein [F 99.9 7.8E-23 1.7E-27 198.0 26.1 280 115-634 14-293 (313)
75 KOG0278 Serine/threonine kinas 99.9 6.1E-24 1.3E-28 203.9 17.9 283 79-594 13-299 (334)
76 KOG0275 Conserved WD40 repeat- 99.9 8.3E-24 1.8E-28 209.6 16.5 296 119-641 211-507 (508)
77 KOG0310 Conserved WD40 repeat- 99.9 9E-23 2E-27 214.6 24.9 283 79-591 25-308 (487)
78 KOG0643 Translation initiation 99.9 4E-22 8.7E-27 193.7 27.1 211 31-261 3-221 (327)
79 KOG0310 Conserved WD40 repeat- 99.9 2.1E-22 4.6E-27 211.8 25.5 201 36-262 24-227 (487)
80 KOG0772 Uncharacterized conser 99.9 1.9E-22 4.1E-27 212.3 24.3 210 35-261 164-395 (641)
81 KOG0283 WD40 repeat-containing 99.9 2.2E-22 4.9E-27 226.0 26.2 271 116-595 261-579 (712)
82 KOG0277 Peroxisomal targeting 99.9 2.9E-22 6.3E-27 193.3 22.8 287 125-642 12-308 (311)
83 KOG0299 U3 snoRNP-associated p 99.9 8.8E-22 1.9E-26 205.5 27.9 288 74-581 136-444 (479)
84 KOG0305 Anaphase promoting com 99.9 4.7E-22 1E-26 218.4 27.2 278 83-593 180-462 (484)
85 KOG0640 mRNA cleavage stimulat 99.9 3.9E-22 8.4E-27 197.1 22.7 312 114-642 105-425 (430)
86 KOG0288 WD40 repeat protein Ti 99.9 7.6E-23 1.6E-27 210.3 17.1 197 35-261 172-372 (459)
87 KOG0289 mRNA splicing factor [ 99.9 2.7E-21 5.9E-26 199.9 27.7 285 81-591 220-505 (506)
88 KOG0641 WD40 repeat protein [G 99.9 2.9E-20 6.2E-25 175.8 32.2 307 72-592 24-349 (350)
89 KOG0647 mRNA export protein (c 99.9 7.8E-21 1.7E-25 188.1 28.1 199 38-262 27-230 (347)
90 KOG0268 Sof1-like rRNA process 99.9 1.4E-22 3.1E-27 204.7 15.9 285 34-532 62-348 (433)
91 KOG0299 U3 snoRNP-associated p 99.9 4.8E-21 1E-25 200.0 27.1 298 114-632 135-444 (479)
92 KOG0973 Histone transcription 99.9 1.7E-21 3.6E-26 224.3 26.0 332 75-533 8-359 (942)
93 KOG0283 WD40 repeat-containing 99.9 8.6E-22 1.9E-26 221.3 22.7 257 175-643 265-576 (712)
94 KOG0646 WD40 repeat protein [G 99.9 3E-21 6.5E-26 202.0 24.9 306 102-617 18-329 (476)
95 PTZ00421 coronin; Provisional 99.9 2.4E-20 5.3E-25 213.8 33.8 196 40-261 22-246 (493)
96 KOG2055 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 197.0 27.1 217 20-261 191-418 (514)
97 KOG2096 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 186.5 26.7 311 75-590 82-400 (420)
98 KOG0305 Anaphase promoting com 99.9 9.6E-21 2.1E-25 208.2 27.5 192 43-262 182-378 (484)
99 KOG0973 Histone transcription 99.9 4.6E-21 9.9E-26 220.8 25.0 312 120-644 12-356 (942)
100 KOG1445 Tumor-specific antigen 99.9 4.1E-19 8.8E-24 190.9 37.9 142 113-273 71-213 (1012)
101 KOG0300 WD40 repeat-containing 99.9 9.5E-21 2.1E-25 187.6 23.6 219 18-262 127-388 (481)
102 KOG0289 mRNA splicing factor [ 99.9 2.2E-20 4.8E-25 193.2 27.0 198 40-261 221-420 (506)
103 KOG0301 Phospholipase A2-activ 99.9 1.5E-20 3.2E-25 205.4 26.8 195 34-261 10-209 (745)
104 KOG1036 Mitotic spindle checkp 99.9 3.9E-20 8.5E-25 184.3 27.5 159 73-261 6-164 (323)
105 KOG0647 mRNA export protein (c 99.9 3E-20 6.5E-25 184.0 26.1 161 75-262 22-186 (347)
106 KOG0308 Conserved WD40 repeat- 99.9 3.3E-21 7.1E-26 208.7 20.9 204 43-261 29-244 (735)
107 KOG0268 Sof1-like rRNA process 99.9 9.6E-22 2.1E-26 198.8 15.5 288 114-648 59-350 (433)
108 KOG0641 WD40 repeat protein [G 99.9 2.1E-19 4.5E-24 170.0 30.0 311 119-643 30-349 (350)
109 PTZ00421 coronin; Provisional 99.9 1.2E-19 2.6E-24 208.2 33.7 265 179-651 22-298 (493)
110 KOG2055 WD40 repeat protein [G 99.9 2.6E-20 5.6E-25 194.3 25.2 163 76-261 209-375 (514)
111 KOG0274 Cdc4 and related F-box 99.9 7.2E-20 1.6E-24 209.8 31.5 194 36-262 206-402 (537)
112 PTZ00420 coronin; Provisional 99.9 3.3E-19 7.2E-24 205.0 35.7 179 56-261 50-249 (568)
113 KOG2096 WD40 repeat protein [G 99.9 6.5E-20 1.4E-24 182.4 25.5 310 114-642 79-401 (420)
114 KOG0274 Cdc4 and related F-box 99.9 8E-20 1.7E-24 209.5 29.6 283 120-651 207-490 (537)
115 KOG0294 WD40 repeat-containing 99.9 2.1E-19 4.5E-24 179.1 28.5 181 52-261 3-198 (362)
116 KOG1446 Histone H3 (Lys4) meth 99.9 7.9E-19 1.7E-23 176.1 32.7 210 27-262 4-219 (311)
117 KOG1446 Histone H3 (Lys4) meth 99.9 5.9E-19 1.3E-23 177.0 31.6 285 119-643 12-303 (311)
118 KOG0301 Phospholipase A2-activ 99.9 6E-20 1.3E-24 200.7 26.3 280 70-593 5-289 (745)
119 PTZ00420 coronin; Provisional 99.9 2.9E-19 6.2E-24 205.5 33.5 147 98-262 50-199 (568)
120 KOG1036 Mitotic spindle checkp 99.9 1.9E-19 4.1E-24 179.4 27.5 196 38-261 13-208 (323)
121 KOG0300 WD40 repeat-containing 99.9 3.5E-20 7.6E-25 183.6 22.1 308 74-595 143-479 (481)
122 KOG1332 Vesicle coat complex C 99.9 1.9E-20 4.2E-25 179.8 18.5 266 176-651 10-295 (299)
123 KOG1407 WD40 repeat protein [F 99.9 2.9E-19 6.2E-24 173.5 26.6 271 80-584 20-294 (313)
124 KOG0294 WD40 repeat-containing 99.9 8.3E-20 1.8E-24 181.9 23.5 206 25-261 29-238 (362)
125 KOG0308 Conserved WD40 repeat- 99.9 2.1E-20 4.6E-25 202.5 19.7 341 90-651 35-401 (735)
126 KOG1332 Vesicle coat complex C 99.9 4.3E-20 9.2E-25 177.5 19.4 267 79-592 10-286 (299)
127 KOG0639 Transducin-like enhanc 99.8 1.8E-19 4E-24 188.9 21.5 289 117-642 415-703 (705)
128 KOG1274 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 196.2 29.4 214 29-261 4-219 (933)
129 KOG1445 Tumor-specific antigen 99.8 1.1E-17 2.3E-22 180.1 34.7 206 34-261 75-294 (1012)
130 KOG0264 Nucleosome remodeling 99.8 6E-19 1.3E-23 184.9 22.8 215 26-261 112-348 (422)
131 KOG0269 WD40 repeat-containing 99.8 2E-19 4.4E-24 198.8 19.7 299 121-643 39-340 (839)
132 KOG4283 Transcription-coupled 99.8 1.3E-18 2.9E-23 171.3 23.1 220 27-263 32-279 (397)
133 KOG0264 Nucleosome remodeling 99.8 1.4E-18 3E-23 182.1 23.3 174 73-261 117-304 (422)
134 KOG0321 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 187.6 23.7 227 30-261 41-302 (720)
135 KOG0269 WD40 repeat-containing 99.8 5.6E-19 1.2E-23 195.4 19.9 288 81-592 40-340 (839)
136 KOG2445 Nuclear pore complex c 99.8 1.2E-17 2.7E-22 166.0 27.0 275 175-643 11-318 (361)
137 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.8E-23 182.6 21.0 282 77-591 416-703 (705)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.4E-17 1.2E-21 179.3 35.6 182 50-261 1-188 (300)
139 KOG1274 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 188.4 29.7 155 81-262 14-170 (933)
140 KOG0321 WD40 repeat-containing 99.8 3E-18 6.6E-23 185.6 23.5 324 127-645 55-393 (720)
141 KOG0646 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 179.3 20.4 209 35-262 78-309 (476)
142 KOG1963 WD40 repeat protein [G 99.8 1.7E-16 3.8E-21 179.3 35.5 460 33-651 52-591 (792)
143 KOG2445 Nuclear pore complex c 99.8 2.1E-17 4.6E-22 164.3 24.3 298 119-532 11-321 (361)
144 KOG1538 Uncharacterized conser 99.8 2.8E-17 6.1E-22 177.8 26.9 280 81-479 13-295 (1081)
145 KOG4328 WD40 protein [Function 99.8 3.2E-17 7E-22 171.4 25.9 221 21-260 168-399 (498)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4E-16 8.7E-21 172.4 35.2 141 93-260 2-145 (300)
147 KOG4328 WD40 protein [Function 99.8 3.6E-17 7.7E-22 171.1 24.5 311 114-643 179-495 (498)
148 KOG4283 Transcription-coupled 99.8 7.2E-17 1.6E-21 159.2 24.4 162 77-261 40-220 (397)
149 KOG1034 Transcriptional repres 99.8 1.1E-16 2.3E-21 160.7 25.3 163 78-261 36-212 (385)
150 KOG0650 WD40 repeat nucleolar 99.8 1.4E-16 3.1E-21 171.3 27.1 207 27-261 388-638 (733)
151 KOG1273 WD40 repeat protein [G 99.8 1.7E-16 3.7E-21 158.1 25.5 291 180-643 26-322 (405)
152 KOG1273 WD40 repeat protein [G 99.8 1.3E-16 2.9E-21 158.9 24.3 199 41-261 26-227 (405)
153 COG2319 FOG: WD40 repeat [Gene 99.8 2.6E-14 5.7E-19 165.8 45.6 373 33-644 60-443 (466)
154 KOG0270 WD40 repeat-containing 99.8 2E-16 4.3E-21 165.1 24.2 297 86-596 131-453 (463)
155 KOG2919 Guanine nucleotide-bin 99.7 2.5E-16 5.5E-21 157.5 23.3 202 43-261 54-282 (406)
156 KOG1963 WD40 repeat protein [G 99.7 1.7E-14 3.7E-19 163.4 39.3 453 34-644 12-539 (792)
157 KOG0650 WD40 repeat nucleolar 99.7 4.7E-16 1E-20 167.3 24.9 306 74-589 395-732 (733)
158 KOG0270 WD40 repeat-containing 99.7 1.8E-16 3.9E-21 165.5 19.9 203 36-261 171-405 (463)
159 KOG0267 Microtubule severing p 99.7 1E-17 2.3E-22 183.9 9.7 256 94-585 6-261 (825)
160 KOG1538 Uncharacterized conser 99.7 2E-16 4.4E-21 171.3 19.4 274 179-643 14-293 (1081)
161 KOG0302 Ribosome Assembly prot 99.7 5.1E-16 1.1E-20 158.5 19.9 278 117-585 147-432 (440)
162 KOG0302 Ribosome Assembly prot 99.7 3E-16 6.5E-21 160.2 17.5 215 26-261 142-379 (440)
163 KOG1009 Chromatin assembly com 99.7 1.5E-14 3.2E-19 149.6 26.6 174 77-261 10-196 (434)
164 KOG1517 Guanine nucleotide bin 99.7 5.9E-15 1.3E-19 168.4 25.8 305 82-595 1066-1384(1387)
165 KOG4378 Nuclear protein COP1 [ 99.7 1.4E-15 3.1E-20 159.9 19.3 207 32-261 28-240 (673)
166 KOG0307 Vesicle coat complex C 99.7 2.8E-16 6E-21 182.4 15.1 200 42-261 10-241 (1049)
167 KOG1034 Transcriptional repres 99.7 6.7E-15 1.5E-19 148.0 22.5 219 25-260 25-279 (385)
168 KOG0267 Microtubule severing p 99.7 5.9E-17 1.3E-21 178.1 7.0 199 37-261 27-227 (825)
169 KOG1188 WD40 repeat protein [G 99.7 6.5E-15 1.4E-19 149.0 20.6 193 51-262 41-244 (376)
170 KOG4378 Nuclear protein COP1 [ 99.7 1.8E-14 4E-19 151.7 23.2 292 55-574 7-305 (673)
171 KOG1240 Protein kinase contain 99.6 3E-14 6.4E-19 165.6 26.7 182 65-262 1034-1227(1431)
172 KOG0322 G-protein beta subunit 99.6 5.8E-15 1.2E-19 144.0 17.1 210 36-261 12-236 (323)
173 KOG1587 Cytoplasmic dynein int 99.6 4.7E-14 1E-18 160.6 27.4 287 102-593 222-517 (555)
174 KOG4227 WD40 repeat protein [G 99.6 2.7E-14 5.8E-19 146.0 21.7 223 24-261 35-275 (609)
175 KOG0307 Vesicle coat complex C 99.6 2.3E-15 4.9E-20 174.9 14.7 211 30-262 56-286 (1049)
176 KOG0322 G-protein beta subunit 99.6 1.1E-14 2.4E-19 142.0 17.0 154 461-642 167-322 (323)
177 KOG1517 Guanine nucleotide bin 99.6 4.8E-14 1E-18 161.1 24.7 210 32-261 1058-1288(1387)
178 KOG0642 Cell-cycle nuclear pro 99.6 6.8E-15 1.5E-19 158.3 16.5 126 81-213 295-430 (577)
179 KOG1587 Cytoplasmic dynein int 99.6 9.1E-14 2E-18 158.3 26.1 197 60-260 222-428 (555)
180 COG2319 FOG: WD40 repeat [Gene 99.6 6E-12 1.3E-16 145.9 42.2 335 78-651 63-408 (466)
181 KOG1524 WD40 repeat-containing 99.6 2.9E-12 6.4E-17 136.6 33.8 271 119-589 12-283 (737)
182 KOG0290 Conserved WD40 repeat- 99.6 8.9E-14 1.9E-18 137.6 18.5 215 27-262 85-320 (364)
183 KOG1912 WD40 repeat protein [G 99.6 9.5E-12 2E-16 138.3 35.3 453 18-597 14-556 (1062)
184 KOG4227 WD40 repeat protein [G 99.6 2E-13 4.2E-18 139.7 20.5 131 115-261 50-180 (609)
185 KOG1007 WD repeat protein TSSC 99.6 1.9E-13 4.1E-18 135.1 19.6 203 36-261 61-290 (370)
186 KOG1009 Chromatin assembly com 99.6 6.6E-13 1.4E-17 137.6 23.8 195 37-249 12-249 (434)
187 PRK11028 6-phosphogluconolacto 99.6 2.4E-11 5.1E-16 135.9 38.2 146 95-261 5-157 (330)
188 KOG2919 Guanine nucleotide-bin 99.6 1.8E-12 3.9E-17 130.3 25.3 167 82-261 51-239 (406)
189 KOG1188 WD40 repeat protein [G 99.6 4.1E-13 8.8E-18 136.2 20.8 150 93-261 41-197 (376)
190 KOG0642 Cell-cycle nuclear pro 99.6 5.5E-14 1.2E-18 151.4 15.4 214 36-261 292-562 (577)
191 KOG0290 Conserved WD40 repeat- 99.5 1.3E-12 2.8E-17 129.4 23.0 168 81-261 45-228 (364)
192 KOG1524 WD40 repeat-containing 99.5 1.2E-12 2.6E-17 139.4 23.4 175 51-255 76-250 (737)
193 KOG4497 Uncharacterized conser 99.5 6.8E-13 1.5E-17 133.4 20.3 177 43-246 13-194 (447)
194 KOG4497 Uncharacterized conser 99.5 3.2E-12 7E-17 128.6 24.9 108 127-261 14-123 (447)
195 KOG0644 Uncharacterized conser 99.5 3.2E-14 6.9E-19 158.7 10.5 112 35-151 187-300 (1113)
196 KOG1523 Actin-related protein 99.5 1.6E-12 3.4E-17 130.9 20.5 212 37-262 9-238 (361)
197 KOG0649 WD40 repeat protein [G 99.5 1.8E-11 3.8E-16 118.4 26.9 199 40-261 12-236 (325)
198 KOG1007 WD repeat protein TSSC 99.5 8.3E-13 1.8E-17 130.6 18.0 207 39-261 124-362 (370)
199 PRK11028 6-phosphogluconolacto 99.5 2.4E-11 5.3E-16 135.8 32.7 193 53-261 5-206 (330)
200 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-12 5.4E-17 137.6 20.4 125 496-644 287-453 (636)
201 KOG0771 Prolactin regulatory e 99.5 6E-12 1.3E-16 131.8 22.6 156 455-643 194-354 (398)
202 KOG0974 WD-repeat protein WDR6 99.5 1.3E-09 2.8E-14 126.6 43.6 195 41-262 90-290 (967)
203 KOG2110 Uncharacterized conser 99.5 9.6E-11 2.1E-15 120.6 28.8 195 38-261 5-205 (391)
204 KOG0303 Actin-binding protein 99.5 3E-12 6.5E-17 132.0 17.9 213 26-262 69-296 (472)
205 KOG1240 Protein kinase contain 99.4 4.7E-11 1E-15 139.6 29.2 215 27-262 1034-1275(1431)
206 KOG0771 Prolactin regulatory e 99.4 1.5E-12 3.3E-17 136.2 15.4 199 42-261 148-355 (398)
207 KOG0303 Actin-binding protein 99.4 7.3E-12 1.6E-16 129.2 18.6 133 495-651 77-211 (472)
208 KOG1334 WD40 repeat protein [G 99.4 3.3E-12 7.2E-17 135.2 16.3 213 35-259 139-365 (559)
209 PF04762 IKI3: IKI3 family; I 99.4 8.4E-08 1.8E-12 118.6 56.0 210 39-260 22-289 (928)
210 KOG2111 Uncharacterized conser 99.4 6E-10 1.3E-14 112.6 30.0 299 123-589 7-319 (346)
211 KOG0649 WD40 repeat protein [G 99.4 3.9E-11 8.4E-16 116.1 19.7 175 455-654 18-197 (325)
212 KOG2139 WD40 repeat protein [G 99.4 1.8E-10 4E-15 117.8 24.5 197 38-253 140-368 (445)
213 KOG2139 WD40 repeat protein [G 99.4 2.5E-10 5.3E-15 116.9 24.1 187 38-250 98-300 (445)
214 PRK01742 tolB translocation pr 99.4 7.3E-11 1.6E-15 136.2 23.4 172 59-261 183-362 (429)
215 KOG1310 WD40 repeat protein [G 99.3 1.3E-11 2.8E-16 132.1 15.0 221 34-262 46-305 (758)
216 KOG2041 WD40 repeat protein [G 99.3 1.8E-09 3.8E-14 119.2 30.3 162 76-261 10-187 (1189)
217 PF02239 Cytochrom_D1: Cytochr 99.3 2.1E-09 4.5E-14 119.9 31.2 195 50-262 5-204 (369)
218 KOG2321 WD40 repeat protein [G 99.3 2.1E-10 4.5E-15 124.0 20.7 218 31-262 44-304 (703)
219 PRK01742 tolB translocation pr 99.3 1.6E-10 3.4E-15 133.5 21.6 194 36-260 201-401 (429)
220 PF02239 Cytochrom_D1: Cytochr 99.3 2.8E-08 6E-13 110.9 38.5 148 95-261 9-159 (369)
221 KOG1523 Actin-related protein 99.3 3.1E-10 6.7E-15 114.6 19.9 249 177-634 10-269 (361)
222 KOG0644 Uncharacterized conser 99.3 3.3E-11 7.2E-16 135.1 13.6 118 114-260 183-300 (1113)
223 KOG1912 WD40 repeat protein [G 99.3 1.1E-08 2.4E-13 114.5 32.8 155 83-261 18-187 (1062)
224 KOG1334 WD40 repeat protein [G 99.3 1E-10 2.2E-15 124.1 15.6 170 74-261 137-313 (559)
225 KOG2394 WD40 protein DMR-N9 [G 99.2 2.2E-10 4.8E-15 123.0 17.2 167 48-238 183-383 (636)
226 PRK03629 tolB translocation pr 99.2 3.3E-09 7.2E-14 122.1 28.6 173 61-261 180-364 (429)
227 PF04762 IKI3: IKI3 family; I 99.2 9.2E-07 2E-11 109.5 50.8 197 39-261 76-334 (928)
228 KOG1310 WD40 repeat protein [G 99.2 1.7E-09 3.6E-14 116.3 22.8 184 71-260 42-231 (758)
229 KOG3881 Uncharacterized conser 99.2 1.6E-09 3.4E-14 112.6 21.9 158 460-648 162-325 (412)
230 KOG1272 WD40-repeat-containing 99.2 4.2E-11 9.1E-16 126.2 10.0 194 40-261 131-324 (545)
231 KOG1272 WD40-repeat-containing 99.2 1.3E-10 2.9E-15 122.5 12.7 156 77-261 127-282 (545)
232 COG5354 Uncharacterized protei 99.2 2.7E-08 5.9E-13 106.8 29.5 185 37-247 31-239 (561)
233 PF08662 eIF2A: Eukaryotic tra 99.2 3.4E-09 7.3E-14 107.2 21.4 153 42-215 9-184 (194)
234 KOG2110 Uncharacterized conser 99.2 4.5E-09 9.7E-14 108.5 21.4 192 41-261 49-249 (391)
235 KOG2041 WD40 repeat protein [G 99.2 6.3E-08 1.4E-12 107.3 31.3 209 33-261 7-248 (1189)
236 PRK03629 tolB translocation pr 99.1 5.4E-09 1.2E-13 120.4 24.4 195 37-261 197-407 (429)
237 PRK05137 tolB translocation pr 99.1 7.3E-09 1.6E-13 120.1 25.3 198 36-262 199-414 (435)
238 KOG3617 WD40 and TPR repeat-co 99.1 1.3E-09 2.8E-14 122.4 17.5 112 40-153 17-133 (1416)
239 PF08662 eIF2A: Eukaryotic tra 99.1 4E-09 8.6E-14 106.7 19.6 146 86-261 11-180 (194)
240 KOG2315 Predicted translation 99.1 6.4E-08 1.4E-12 105.5 29.5 117 499-651 270-397 (566)
241 PRK04922 tolB translocation pr 99.1 7.9E-09 1.7E-13 119.6 23.2 196 37-261 202-412 (433)
242 PRK05137 tolB translocation pr 99.1 4.2E-08 9.1E-13 113.8 28.9 173 61-261 183-367 (435)
243 KOG1409 Uncharacterized conser 99.1 4.2E-09 9E-14 107.5 17.4 205 32-261 62-271 (404)
244 PRK04922 tolB translocation pr 99.1 2.6E-08 5.7E-13 115.3 25.4 174 60-261 184-369 (433)
245 COG4946 Uncharacterized protei 99.1 6.1E-06 1.3E-10 88.1 40.0 151 457-651 330-485 (668)
246 PF10282 Lactonase: Lactonase, 99.0 5.1E-06 1.1E-10 93.1 42.2 200 53-260 2-222 (345)
247 PRK02889 tolB translocation pr 99.0 7.1E-08 1.5E-12 111.3 27.8 176 60-261 176-361 (427)
248 PF10282 Lactonase: Lactonase, 99.0 6.3E-06 1.4E-10 92.3 42.4 147 102-261 13-175 (345)
249 KOG2315 Predicted translation 99.0 5.8E-07 1.3E-11 98.2 31.1 151 40-209 36-202 (566)
250 KOG1409 Uncharacterized conser 99.0 3.9E-08 8.4E-13 100.6 20.7 121 114-254 17-138 (404)
251 PRK02889 tolB translocation pr 99.0 2.5E-08 5.4E-13 115.1 21.9 190 36-252 193-392 (427)
252 KOG2314 Translation initiation 99.0 2.4E-07 5.1E-12 100.5 26.9 178 41-247 213-410 (698)
253 KOG2111 Uncharacterized conser 99.0 1.4E-07 3E-12 95.9 23.6 217 25-259 81-321 (346)
254 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.1E-06 8.9E-11 91.3 35.1 124 506-651 200-338 (352)
255 COG4946 Uncharacterized protei 98.9 1.4E-06 3E-11 92.8 29.8 171 49-248 331-506 (668)
256 KOG3881 Uncharacterized conser 98.9 4.2E-08 9E-13 102.2 17.8 186 51-261 116-321 (412)
257 KOG1354 Serine/threonine prote 98.9 9.4E-08 2E-12 97.7 19.9 166 467-648 183-364 (433)
258 KOG3617 WD40 and TPR repeat-co 98.9 3.6E-08 7.9E-13 111.1 18.0 73 38-110 59-131 (1416)
259 KOG2321 WD40 repeat protein [G 98.9 3.6E-08 7.8E-13 107.1 16.9 199 38-261 133-344 (703)
260 TIGR02800 propeller_TolB tol-p 98.9 1.3E-07 2.8E-12 109.8 22.7 186 38-252 189-386 (417)
261 KOG4547 WD40 repeat-containing 98.9 1.1E-07 2.4E-12 104.5 19.9 188 47-261 2-221 (541)
262 PRK00178 tolB translocation pr 98.8 4.3E-07 9.2E-12 105.6 24.1 195 38-261 198-407 (430)
263 PRK00178 tolB translocation pr 98.8 1.4E-06 2.9E-11 101.4 27.6 173 61-261 180-364 (430)
264 TIGR02800 propeller_TolB tol-p 98.8 4.3E-07 9.3E-12 105.4 23.3 174 61-262 171-356 (417)
265 PRK04792 tolB translocation pr 98.8 1.7E-06 3.7E-11 100.1 27.9 163 61-251 199-370 (448)
266 PRK04792 tolB translocation pr 98.8 5.9E-07 1.3E-11 104.0 23.0 195 38-261 217-426 (448)
267 COG2706 3-carboxymuconate cycl 98.7 8.8E-05 1.9E-09 77.8 34.7 148 101-262 15-177 (346)
268 KOG1354 Serine/threonine prote 98.7 1.2E-07 2.6E-12 96.9 13.2 213 39-261 26-302 (433)
269 KOG0974 WD-repeat protein WDR6 98.7 2.5E-07 5.5E-12 108.0 17.6 147 455-643 141-288 (967)
270 KOG4547 WD40 repeat-containing 98.7 1.5E-06 3.2E-11 95.9 21.7 160 457-655 3-184 (541)
271 KOG1064 RAVE (regulator of V-A 98.7 7.8E-08 1.7E-12 117.0 11.4 188 39-262 2209-2400(2439)
272 KOG3914 WD repeat protein WDR4 98.7 1.7E-07 3.8E-12 98.4 12.5 162 40-217 64-231 (390)
273 TIGR02658 TTQ_MADH_Hv methylam 98.7 6.5E-05 1.4E-09 82.0 32.6 106 102-217 27-144 (352)
274 KOG1064 RAVE (regulator of V-A 98.6 1.8E-07 3.9E-12 114.0 13.2 140 93-260 2181-2323(2439)
275 TIGR03300 assembly_YfgL outer 98.6 7.2E-05 1.6E-09 85.4 34.0 146 92-262 65-210 (377)
276 PLN02919 haloacid dehalogenase 98.6 3.1E-05 6.7E-10 98.2 33.0 182 26-213 557-774 (1057)
277 PRK01029 tolB translocation pr 98.6 4.8E-06 1E-10 95.6 23.4 197 40-262 186-405 (428)
278 TIGR03300 assembly_YfgL outer 98.6 4.4E-05 9.6E-10 87.1 31.2 191 50-262 65-261 (377)
279 KOG0309 Conserved WD40 repeat- 98.6 2.6E-07 5.6E-12 103.1 12.0 204 35-261 21-233 (1081)
280 COG5354 Uncharacterized protei 98.6 2.3E-05 4.9E-10 85.0 25.9 126 105-259 15-159 (561)
281 KOG3914 WD repeat protein WDR4 98.6 7.2E-07 1.6E-11 93.8 14.0 162 455-653 70-233 (390)
282 KOG4532 WD40-like repeat conta 98.6 5.9E-06 1.3E-10 82.1 19.4 156 462-651 131-290 (344)
283 PF15492 Nbas_N: Neuroblastoma 98.6 2.7E-05 5.8E-10 79.2 23.9 211 43-263 2-262 (282)
284 COG2706 3-carboxymuconate cycl 98.5 4.5E-05 9.8E-10 79.9 25.4 219 30-261 79-322 (346)
285 PLN02919 haloacid dehalogenase 98.5 2E-05 4.4E-10 99.8 27.9 220 40-262 625-890 (1057)
286 KOG4532 WD40-like repeat conta 98.5 7.9E-06 1.7E-10 81.2 18.5 199 52-261 130-332 (344)
287 KOG4190 Uncharacterized conser 98.5 6.7E-07 1.5E-11 96.4 11.1 208 30-262 727-950 (1034)
288 KOG0280 Uncharacterized conser 98.5 1.2E-05 2.6E-10 81.1 18.8 192 51-262 25-243 (339)
289 KOG4714 Nucleoporin [Nuclear s 98.5 1.5E-06 3.3E-11 85.9 12.2 210 26-258 78-316 (319)
290 KOG2314 Translation initiation 98.4 0.00014 3.1E-09 79.5 27.1 165 62-261 192-368 (698)
291 PF15492 Nbas_N: Neuroblastoma 98.4 4.2E-05 9.2E-10 77.7 20.8 173 42-216 47-266 (282)
292 KOG4714 Nucleoporin [Nuclear s 98.4 8E-06 1.7E-10 80.9 14.4 195 41-261 39-255 (319)
293 PRK01029 tolB translocation pr 98.4 2.2E-05 4.8E-10 90.2 20.7 159 38-214 230-408 (428)
294 KOG0882 Cyclophilin-related pe 98.4 1.5E-05 3.1E-10 84.9 16.9 165 464-651 117-313 (558)
295 KOG2114 Vacuolar assembly/sort 98.3 4.1E-05 8.9E-10 88.1 20.9 196 45-261 30-244 (933)
296 PRK04043 tolB translocation pr 98.3 0.00012 2.7E-09 83.5 24.6 191 40-261 189-401 (419)
297 COG5170 CDC55 Serine/threonine 98.3 4E-06 8.6E-11 84.7 10.5 214 39-262 27-311 (460)
298 KOG0280 Uncharacterized conser 98.3 1.6E-05 3.5E-10 80.3 14.2 187 52-261 87-285 (339)
299 KOG2695 WD40 repeat protein [G 98.2 6.2E-06 1.4E-10 84.8 9.6 185 35-238 209-401 (425)
300 KOG2066 Vacuolar assembly/sort 98.2 4.4E-05 9.4E-10 87.4 15.9 190 39-261 40-234 (846)
301 KOG0309 Conserved WD40 repeat- 98.1 9.4E-06 2E-10 91.1 10.1 211 31-262 107-341 (1081)
302 KOG4190 Uncharacterized conser 98.1 1.1E-05 2.4E-10 87.2 10.2 163 456-651 744-914 (1034)
303 KOG1897 Damage-specific DNA bi 98.1 0.05 1.1E-06 64.7 44.9 137 62-212 472-616 (1096)
304 PRK11138 outer membrane biogen 98.1 0.0023 5.1E-08 73.3 29.6 136 460-642 257-393 (394)
305 KOG2695 WD40 repeat protein [G 98.1 3.1E-05 6.6E-10 79.9 11.9 154 463-654 228-387 (425)
306 PRK11138 outer membrane biogen 98.1 0.0043 9.3E-08 71.1 31.0 154 461-653 207-363 (394)
307 KOG1920 IkappaB kinase complex 98.1 0.0015 3.3E-08 78.6 27.1 212 38-261 18-275 (1265)
308 COG5170 CDC55 Serine/threonine 98.1 2.7E-05 5.8E-10 78.9 10.7 87 121-211 26-119 (460)
309 PF08450 SGL: SMP-30/Gluconola 98.0 0.0062 1.3E-07 64.7 29.3 194 42-261 3-214 (246)
310 KOG3621 WD40 repeat-containing 98.0 0.00012 2.6E-09 82.9 16.1 159 455-646 41-200 (726)
311 PF11768 DUF3312: Protein of u 98.0 0.012 2.6E-07 66.4 30.3 95 472-596 239-333 (545)
312 KOG1920 IkappaB kinase complex 98.0 0.015 3.3E-07 70.4 32.4 199 39-261 69-323 (1265)
313 PRK04043 tolB translocation pr 97.9 0.0022 4.7E-08 73.4 24.7 171 61-262 170-359 (419)
314 PF00400 WD40: WD domain, G-be 97.9 3.4E-05 7.3E-10 55.1 6.5 35 556-590 5-39 (39)
315 PF11768 DUF3312: Protein of u 97.9 0.0011 2.3E-08 74.6 20.6 137 84-238 209-366 (545)
316 PF06977 SdiA-regulated: SdiA- 97.9 0.0033 7.2E-08 65.5 23.0 213 35-256 18-246 (248)
317 KOG2114 Vacuolar assembly/sort 97.9 0.002 4.4E-08 74.7 22.6 166 451-647 27-204 (933)
318 KOG2066 Vacuolar assembly/sort 97.9 0.00096 2.1E-08 76.8 19.5 176 459-715 49-233 (846)
319 PF00400 WD40: WD domain, G-be 97.8 5.3E-05 1.1E-09 54.1 6.2 36 114-149 4-39 (39)
320 PF08450 SGL: SMP-30/Gluconola 97.8 0.022 4.7E-07 60.6 28.9 192 35-248 37-243 (246)
321 KOG1645 RING-finger-containing 97.8 0.0017 3.7E-08 68.9 19.1 76 79-154 192-269 (463)
322 KOG3621 WD40 repeat-containing 97.7 0.002 4.4E-08 73.3 19.6 151 74-238 27-179 (726)
323 KOG0860 Synaptobrevin/VAMP-lik 97.7 3E-05 6.4E-10 67.4 3.3 39 997-1035 49-87 (116)
324 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.076 1.6E-06 53.5 30.4 107 92-216 23-130 (354)
325 KOG1275 PAB-dependent poly(A) 97.7 0.00083 1.8E-08 78.1 15.7 182 51-260 148-342 (1118)
326 KOG0882 Cyclophilin-related pe 97.7 0.00054 1.2E-08 73.3 12.8 217 36-262 51-307 (558)
327 PF04841 Vps16_N: Vps16, N-ter 97.7 0.017 3.8E-07 65.8 26.1 195 44-261 34-247 (410)
328 PF13360 PQQ_2: PQQ-like domai 97.6 0.017 3.7E-07 61.0 23.8 188 59-262 2-193 (238)
329 KOG1645 RING-finger-containing 97.6 0.0015 3.3E-08 69.2 14.3 95 17-113 173-269 (463)
330 PF13360 PQQ_2: PQQ-like domai 97.5 0.017 3.7E-07 60.9 23.0 190 49-262 35-232 (238)
331 PF00957 Synaptobrevin: Synapt 97.5 6.3E-05 1.4E-09 65.2 3.4 48 991-1038 17-64 (89)
332 KOG1832 HIV-1 Vpr-binding prot 97.5 8.8E-05 1.9E-09 85.1 5.1 200 28-264 1092-1295(1516)
333 PF03178 CPSF_A: CPSF A subuni 97.5 0.016 3.4E-07 64.4 23.0 199 41-257 29-262 (321)
334 PF07433 DUF1513: Protein of u 97.5 0.038 8.2E-07 58.6 23.4 210 37-262 3-249 (305)
335 KOG1008 Uncharacterized conser 97.5 8.7E-05 1.9E-09 82.7 4.0 197 41-262 59-277 (783)
336 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.16 3.5E-06 51.3 30.5 103 133-262 23-125 (354)
337 PF07433 DUF1513: Protein of u 97.5 0.034 7.3E-07 59.0 22.7 190 44-258 56-283 (305)
338 PF08596 Lgl_C: Lethal giant l 97.4 0.036 7.9E-07 62.4 24.6 206 40-262 3-292 (395)
339 PF06433 Me-amine-dh_H: Methyl 97.4 0.16 3.5E-06 54.6 27.3 165 461-652 149-329 (342)
340 PF08366 LLGL: LLGL2; InterPr 97.3 0.0046 1E-07 53.9 11.9 91 281-378 7-99 (105)
341 PF04841 Vps16_N: Vps16, N-ter 97.3 0.21 4.6E-06 57.0 28.5 33 499-531 216-248 (410)
342 KOG4640 Anaphase-promoting com 97.2 0.00096 2.1E-08 74.9 8.6 95 499-617 20-115 (665)
343 PF00780 CNH: CNH domain; Int 97.1 0.26 5.6E-06 53.3 26.3 161 457-651 5-173 (275)
344 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0017 3.6E-08 47.9 5.9 41 29-69 2-42 (47)
345 COG3204 Uncharacterized protei 97.1 0.14 2.9E-06 53.2 21.2 182 25-211 70-265 (316)
346 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.021 4.6E-07 50.4 13.1 100 41-146 2-109 (111)
347 KOG2079 Vacuolar assembly/sort 97.0 0.0099 2.1E-07 71.0 14.3 112 501-642 89-202 (1206)
348 PRK02888 nitrous-oxide reducta 97.0 0.027 5.8E-07 65.3 17.2 156 46-210 200-405 (635)
349 cd00216 PQQ_DH Dehydrogenases 96.8 1.2 2.7E-05 52.4 30.5 66 582-653 364-434 (488)
350 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.35 7.7E-06 54.4 24.2 89 558-653 303-408 (415)
351 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.062 1.3E-06 47.5 14.3 102 83-204 2-109 (111)
352 KOG4640 Anaphase-promoting com 96.8 0.0063 1.4E-07 68.5 9.8 95 37-131 19-115 (665)
353 PF14727 PHTB1_N: PTHB1 N-term 96.7 1.7 3.7E-05 49.2 31.7 290 457-819 35-363 (418)
354 PF00930 DPPIV_N: Dipeptidyl p 96.7 1.7 3.6E-05 49.0 30.3 172 47-247 1-200 (353)
355 KOG1897 Damage-specific DNA bi 96.5 3 6.6E-05 50.4 57.9 121 501-647 489-619 (1096)
356 PF04053 Coatomer_WDAD: Coatom 96.5 0.16 3.5E-06 58.0 19.1 183 39-256 33-219 (443)
357 KOG2079 Vacuolar assembly/sort 96.5 0.042 9E-07 65.9 14.2 100 49-150 98-202 (1206)
358 PF08553 VID27: VID27 cytoplas 96.4 0.22 4.7E-06 60.2 20.3 222 458-729 492-737 (794)
359 cd00216 PQQ_DH Dehydrogenases 96.4 2.5 5.5E-05 49.8 29.2 112 93-217 62-191 (488)
360 PF06977 SdiA-regulated: SdiA- 96.3 0.5 1.1E-05 49.5 19.9 172 82-261 23-202 (248)
361 PF00780 CNH: CNH domain; Int 96.3 0.44 9.5E-06 51.5 20.4 148 47-215 4-171 (275)
362 PF05096 Glu_cyclase_2: Glutam 96.2 1.7 3.6E-05 45.4 22.9 207 26-248 30-249 (264)
363 KOG1275 PAB-dependent poly(A) 96.2 0.031 6.7E-07 65.6 11.2 143 456-641 184-340 (1118)
364 PRK13616 lipoprotein LpqB; Pro 96.2 0.27 5.9E-06 58.6 19.2 188 39-254 350-562 (591)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 4.4 9.5E-05 48.1 32.1 61 584-654 441-501 (527)
366 KOG1008 Uncharacterized conser 96.1 0.0039 8.5E-08 70.0 3.2 212 36-260 100-335 (783)
367 PF03178 CPSF_A: CPSF A subuni 96.1 0.87 1.9E-05 50.5 21.9 122 26-152 76-203 (321)
368 KOG1832 HIV-1 Vpr-binding prot 96.1 0.0054 1.2E-07 71.1 4.1 143 455-644 1109-1256(1516)
369 PRK02888 nitrous-oxide reducta 96.0 0.45 9.8E-06 55.5 19.3 200 48-261 139-405 (635)
370 COG0823 TolB Periplasmic compo 96.0 0.12 2.6E-06 59.0 14.7 153 41-212 195-361 (425)
371 PF06433 Me-amine-dh_H: Methyl 96.0 2.5 5.4E-05 45.8 23.4 201 42-265 98-325 (342)
372 smart00320 WD40 WD40 repeats. 96.0 0.018 4E-07 39.6 5.3 34 557-590 7-40 (40)
373 KOG2444 WD40 repeat protein [G 95.8 0.016 3.5E-07 57.5 5.7 141 95-261 33-178 (238)
374 PF12894 Apc4_WD40: Anaphase-p 95.8 0.027 5.9E-07 41.6 5.4 34 562-595 11-44 (47)
375 PF10168 Nup88: Nuclear pore c 95.7 1.9 4E-05 52.6 23.7 82 177-262 84-181 (717)
376 smart00320 WD40 WD40 repeats. 95.6 0.029 6.4E-07 38.5 5.1 35 115-149 6-40 (40)
377 COG3391 Uncharacterized conser 95.5 3.1 6.7E-05 47.3 23.7 202 39-262 74-285 (381)
378 PF14727 PHTB1_N: PTHB1 N-term 95.5 6 0.00013 44.8 29.5 143 50-209 37-204 (418)
379 COG3490 Uncharacterized protei 95.3 0.97 2.1E-05 46.6 16.3 108 32-139 61-179 (366)
380 PF10647 Gmad1: Lipoprotein Lp 95.3 4.5 9.8E-05 42.9 22.7 150 40-199 25-185 (253)
381 KOG3630 Nuclear pore complex, 95.3 0.18 4E-06 61.0 12.7 184 42-247 45-260 (1405)
382 PF04053 Coatomer_WDAD: Coatom 95.2 0.62 1.3E-05 53.4 16.7 183 40-261 70-263 (443)
383 PF08553 VID27: VID27 cytoplas 95.1 0.95 2.1E-05 55.0 18.4 146 91-260 492-647 (794)
384 COG3204 Uncharacterized protei 95.0 1.9 4.2E-05 45.0 17.5 175 81-261 86-264 (316)
385 KOG2444 WD40 repeat protein [G 95.0 0.064 1.4E-06 53.4 6.7 105 49-153 69-179 (238)
386 KOG2395 Protein involved in va 94.9 1.2 2.6E-05 49.9 16.8 201 39-260 277-500 (644)
387 KOG3630 Nuclear pore complex, 94.7 0.99 2.2E-05 55.1 16.6 149 39-202 101-265 (1405)
388 COG0823 TolB Periplasmic compo 94.6 1 2.2E-05 51.4 16.4 173 62-262 175-360 (425)
389 COG3386 Gluconolactonase [Carb 94.6 4.1 8.8E-05 44.3 20.1 197 33-250 60-275 (307)
390 PRK13616 lipoprotein LpqB; Pro 94.6 1.6 3.5E-05 52.2 18.5 185 59-260 328-525 (591)
391 COG3391 Uncharacterized conser 94.4 5.1 0.00011 45.5 21.5 160 40-216 117-290 (381)
392 PF14870 PSII_BNR: Photosynthe 94.1 10 0.00022 41.1 25.1 180 57-257 121-301 (302)
393 KOG0859 Synaptobrevin/VAMP-lik 94.1 0.044 9.5E-07 52.6 3.1 42 995-1036 143-184 (217)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.9 18 0.00039 42.9 32.8 112 93-217 70-197 (527)
395 PF14781 BBS2_N: Ciliary BBSom 93.4 2.7 5.8E-05 38.7 13.2 122 503-647 2-128 (136)
396 COG3490 Uncharacterized protei 93.3 5.5 0.00012 41.4 16.6 171 455-652 121-319 (366)
397 KOG4499 Ca2+-binding protein R 93.0 5.3 0.00012 40.2 15.4 151 83-249 111-273 (310)
398 PF02897 Peptidase_S9_N: Proly 93.0 21 0.00046 41.1 25.1 127 26-153 111-262 (414)
399 PF10647 Gmad1: Lipoprotein Lp 93.0 6.8 0.00015 41.5 18.0 154 82-252 25-187 (253)
400 PF12234 Rav1p_C: RAVE protein 92.4 5.7 0.00012 47.2 17.6 124 563-715 30-156 (631)
401 PF10395 Utp8: Utp8 family; I 92.1 26 0.00056 41.8 22.3 31 607-643 129-159 (670)
402 COG3386 Gluconolactonase [Carb 92.0 20 0.00043 39.1 20.2 193 44-260 30-243 (307)
403 PF14761 HPS3_N: Hermansky-Pud 92.0 15 0.00033 37.1 17.5 163 460-642 29-213 (215)
404 PF10168 Nup88: Nuclear pore c 91.8 11 0.00024 46.1 19.8 75 39-113 85-182 (717)
405 PF00930 DPPIV_N: Dipeptidyl p 91.4 28 0.00061 39.1 28.6 65 190-265 3-76 (353)
406 PF08728 CRT10: CRT10; InterP 91.4 4.5 9.7E-05 48.5 15.4 176 459-642 49-245 (717)
407 PRK13684 Ycf48-like protein; P 90.9 11 0.00023 42.0 17.3 153 38-208 172-330 (334)
408 KOG2395 Protein involved in va 90.5 2.4 5.3E-05 47.6 11.3 116 32-149 369-498 (644)
409 PF15390 DUF4613: Domain of un 90.4 5.2 0.00011 45.9 13.8 157 81-261 20-187 (671)
410 KOG2280 Vacuolar assembly/sort 90.3 47 0.001 39.7 21.7 71 563-643 84-155 (829)
411 PF14761 HPS3_N: Hermansky-Pud 90.1 20 0.00042 36.3 16.2 160 93-259 29-213 (215)
412 PF08728 CRT10: CRT10; InterP 90.1 2.1 4.6E-05 51.1 11.1 115 37-151 99-246 (717)
413 TIGR02604 Piru_Ver_Nterm putat 89.8 10 0.00022 42.9 16.2 97 39-138 14-140 (367)
414 PF14781 BBS2_N: Ciliary BBSom 89.7 9.7 0.00021 35.2 12.6 111 41-154 1-128 (136)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 89.7 1.9 4E-05 48.7 9.9 98 567-668 6-118 (415)
416 KOG2280 Vacuolar assembly/sort 89.5 26 0.00056 41.7 18.8 198 39-261 44-247 (829)
417 PF14583 Pectate_lyase22: Olig 89.5 39 0.00084 37.6 26.9 80 87-169 42-125 (386)
418 PF05694 SBP56: 56kDa selenium 89.4 42 0.0009 37.8 20.2 172 35-212 129-345 (461)
419 PLN00033 photosystem II stabil 89.3 22 0.00047 40.4 18.1 149 39-206 239-396 (398)
420 PRK13684 Ycf48-like protein; P 89.2 41 0.00089 37.4 21.1 158 80-260 172-331 (334)
421 KOG1900 Nuclear pore complex, 89.1 14 0.00031 46.6 17.3 157 455-644 87-273 (1311)
422 PF14870 PSII_BNR: Photosynthe 89.0 14 0.00031 39.9 15.7 150 455-640 152-301 (302)
423 KOG1983 Tomosyn and related SN 89.0 6.1 0.00013 50.3 14.8 36 119-154 33-68 (993)
424 PF07569 Hira: TUP1-like enhan 88.7 2.5 5.4E-05 43.6 9.3 72 563-643 13-95 (219)
425 KOG1916 Nuclear protein, conta 88.4 0.26 5.6E-06 58.2 2.1 117 33-151 127-265 (1283)
426 TIGR03118 PEPCTERM_chp_1 conse 88.0 40 0.00087 35.9 19.5 226 22-263 13-282 (336)
427 PF10313 DUF2415: Uncharacteri 87.9 1.4 3E-05 31.7 4.7 31 563-593 1-34 (43)
428 PHA02713 hypothetical protein; 87.9 7.2 0.00016 46.8 14.0 67 573-648 463-538 (557)
429 PF10979 DUF2786: Protein of u 87.9 0.28 6E-06 35.4 1.2 39 998-1036 1-39 (43)
430 PHA02713 hypothetical protein; 87.1 16 0.00035 43.8 16.4 146 91-261 351-534 (557)
431 PF07569 Hira: TUP1-like enhan 86.7 3.6 7.8E-05 42.4 9.1 66 88-154 18-98 (219)
432 PF12234 Rav1p_C: RAVE protein 86.2 14 0.0003 44.1 14.5 117 123-260 31-156 (631)
433 KOG2377 Uncharacterized conser 85.8 10 0.00022 42.0 12.1 138 42-197 26-171 (657)
434 PF10214 Rrn6: RNA polymerase 85.4 1.1E+02 0.0024 38.4 25.6 181 492-716 71-277 (765)
435 PF11635 Med16: Mediator compl 85.4 91 0.002 38.9 22.0 132 500-638 181-345 (753)
436 PF15390 DUF4613: Domain of un 84.9 85 0.0019 36.6 29.5 121 500-642 57-185 (671)
437 PF12657 TFIIIC_delta: Transcr 83.2 5 0.00011 39.7 8.1 35 609-643 87-121 (173)
438 TIGR03118 PEPCTERM_chp_1 conse 82.8 72 0.0016 34.1 21.2 178 461-651 102-287 (336)
439 KOG3616 Selective LIM binding 82.7 30 0.00066 40.7 14.6 107 39-149 15-124 (1636)
440 PF02897 Peptidase_S9_N: Proly 82.7 97 0.0021 35.6 29.4 60 180-251 126-190 (414)
441 PF13449 Phytase-like: Esteras 82.6 84 0.0018 34.8 18.6 113 81-199 20-166 (326)
442 KOG4441 Proteins containing BT 80.9 52 0.0011 39.5 16.9 154 457-650 331-506 (571)
443 KOG4441 Proteins containing BT 80.0 37 0.0008 40.8 15.2 152 456-648 378-551 (571)
444 KOG1898 Splicing factor 3b, su 79.9 1.7E+02 0.0037 36.6 34.4 118 34-151 533-671 (1205)
445 PHA03098 kelch-like protein; P 79.7 65 0.0014 38.6 17.6 63 91-154 342-417 (534)
446 PF05694 SBP56: 56kDa selenium 79.7 40 0.00086 38.0 13.9 116 468-593 221-343 (461)
447 TIGR02604 Piru_Ver_Nterm putat 79.0 80 0.0017 35.6 17.0 107 83-198 16-142 (367)
448 PHA02790 Kelch-like protein; P 78.7 49 0.0011 38.9 15.7 146 457-645 317-472 (480)
449 KOG1896 mRNA cleavage and poly 78.6 49 0.0011 41.7 15.3 146 51-210 1047-1214(1366)
450 PF10433 MMS1_N: Mono-function 78.2 1.5E+02 0.0033 35.1 34.1 198 41-260 46-286 (504)
451 PRK10115 protease 2; Provision 77.6 1.9E+02 0.0041 35.8 24.6 124 26-151 114-255 (686)
452 PF10313 DUF2415: Uncharacteri 77.6 6.7 0.00014 28.2 4.7 30 39-68 1-33 (43)
453 PF12768 Rax2: Cortical protei 77.0 82 0.0018 33.8 15.1 98 520-643 15-123 (281)
454 KOG4460 Nuclear pore complex, 76.8 45 0.00097 38.0 13.1 94 123-219 105-208 (741)
455 KOG2063 Vacuolar assembly/sort 76.6 1.6E+02 0.0034 36.9 19.0 76 455-533 22-100 (877)
456 KOG2377 Uncharacterized conser 76.4 24 0.00051 39.3 10.7 110 503-640 26-137 (657)
457 PF12768 Rax2: Cortical protei 75.3 88 0.0019 33.6 14.8 95 59-154 15-124 (281)
458 PF12657 TFIIIC_delta: Transcr 75.2 11 0.00025 37.2 7.8 31 122-152 86-122 (173)
459 PF02333 Phytase: Phytase; In 72.7 1.7E+02 0.0036 32.9 24.7 200 43-261 58-291 (381)
460 PF01011 PQQ: PQQ enzyme repea 72.5 8.7 0.00019 26.8 4.4 29 627-655 2-30 (38)
461 KOG2247 WD40 repeat-containing 71.9 0.84 1.8E-05 50.6 -1.3 145 40-205 36-184 (615)
462 PHA03098 kelch-like protein; P 71.8 1.2E+02 0.0027 36.2 17.1 25 573-597 389-419 (534)
463 PF10214 Rrn6: RNA polymerase 71.4 2.8E+02 0.006 34.9 21.6 174 75-261 74-277 (765)
464 KOG4499 Ca2+-binding protein R 70.9 80 0.0017 32.2 12.0 99 503-616 161-262 (310)
465 PF05096 Glu_cyclase_2: Glutam 70.9 1.5E+02 0.0032 31.4 21.2 167 71-262 35-205 (264)
466 PF11715 Nup160: Nucleoporin N 70.6 20 0.00044 43.1 10.0 68 48-115 156-253 (547)
467 PF07995 GSDH: Glucose / Sorbo 70.3 65 0.0014 35.7 13.1 104 40-144 3-136 (331)
468 KOG3616 Selective LIM binding 69.9 49 0.0011 39.1 11.7 35 499-533 14-48 (1636)
469 TIGR03074 PQQ_membr_DH membran 68.7 3.1E+02 0.0067 34.3 42.4 70 584-659 641-726 (764)
470 KOG4460 Nuclear pore complex, 68.4 76 0.0017 36.2 12.5 94 500-601 104-207 (741)
471 TIGR01063 gyrA DNA gyrase, A s 67.7 3.3E+02 0.0072 34.3 21.3 204 46-261 542-770 (800)
472 KOG1900 Nuclear pore complex, 67.5 43 0.00093 42.6 11.5 159 86-261 84-273 (1311)
473 PF05935 Arylsulfotrans: Aryls 67.1 2.6E+02 0.0056 32.8 21.8 193 58-262 126-369 (477)
474 PHA02790 Kelch-like protein; P 66.7 2.6E+02 0.0057 32.8 18.5 144 90-261 317-471 (480)
475 KOG2247 WD40 repeat-containing 66.2 0.98 2.1E-05 50.1 -2.2 116 36-152 72-189 (615)
476 PF13449 Phytase-like: Esteras 65.7 2.2E+02 0.0047 31.5 23.6 152 39-196 20-231 (326)
477 smart00036 CNH Domain found in 65.3 2.1E+02 0.0046 31.2 16.1 160 42-210 5-184 (302)
478 PF11715 Nup160: Nucleoporin N 65.3 21 0.00045 43.0 8.6 81 572-654 156-259 (547)
479 KOG1896 mRNA cleavage and poly 65.0 4E+02 0.0087 34.2 41.9 63 29-91 615-678 (1366)
480 COG5276 Uncharacterized conser 64.3 2E+02 0.0044 30.6 26.2 153 81-261 87-242 (370)
481 PF08801 Nucleoporin_N: Nup133 63.5 1.5E+02 0.0032 34.3 14.9 32 229-261 189-220 (422)
482 COG4590 ABC-type uncharacteriz 63.0 26 0.00057 38.9 7.6 157 37-212 219-389 (733)
483 smart00564 PQQ beta-propeller 63.0 15 0.00031 24.4 3.9 27 625-651 6-32 (33)
484 PF14779 BBS1: Ciliary BBSome 60.7 50 0.0011 34.6 9.0 71 563-641 177-256 (257)
485 COG4257 Vgb Streptogramin lyas 60.5 2.3E+02 0.0049 29.9 16.6 187 40-261 63-263 (353)
486 PRK13613 lipoprotein LpqB; Pro 58.9 4E+02 0.0086 32.2 19.7 195 40-255 364-577 (599)
487 PLN02193 nitrile-specifier pro 57.6 3.4E+02 0.0073 31.8 16.6 25 573-597 328-356 (470)
488 KOG3522 Predicted guanine nucl 57.3 1E+02 0.0022 37.4 11.7 150 461-644 549-698 (925)
489 TIGR02276 beta_rpt_yvtn 40-res 57.3 33 0.00071 24.1 5.2 30 572-601 1-31 (42)
490 PF10395 Utp8: Utp8 family; I 56.8 4.3E+02 0.0094 32.0 23.0 215 29-261 60-306 (670)
491 PF11635 Med16: Mediator compl 55.8 5.1E+02 0.011 32.5 22.3 80 500-587 260-345 (753)
492 PF14583 Pectate_lyase22: Olig 54.7 3.5E+02 0.0077 30.3 29.6 85 45-130 42-131 (386)
493 COG5167 VID27 Protein involved 53.1 1.4E+02 0.003 34.1 11.2 130 16-147 486-629 (776)
494 COG5290 IkappaB kinase complex 52.0 2.6E+02 0.0056 33.9 13.5 32 37-68 111-142 (1243)
495 PLN00033 photosystem II stabil 51.6 4.1E+02 0.009 30.2 23.3 149 86-257 244-396 (398)
496 KOG1916 Nuclear protein, conta 51.5 8 0.00017 46.4 1.7 109 46-155 191-327 (1283)
497 PF12341 DUF3639: Protein of u 51.0 35 0.00075 21.9 3.7 25 40-66 3-27 (27)
498 TIGR03548 mutarot_permut cycli 50.3 3.8E+02 0.0082 29.4 15.6 27 571-597 169-199 (323)
499 TIGR02276 beta_rpt_yvtn 40-res 49.3 67 0.0015 22.5 5.8 26 90-115 1-27 (42)
500 COG5290 IkappaB kinase complex 48.9 48 0.001 39.6 7.2 141 41-198 204-356 (1243)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=369.29 Aligned_cols=470 Identities=15% Similarity=0.202 Sum_probs=344.2
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-ee
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LS 115 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~ 115 (1042)
+..+++++.+|++.+|.++.+...+++|..+ |........-+..||.-++|+|.+..|++|+.||.++|||+..+. ..
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 4579999999999999999999999999998 455556666567899999999999999999999999999999988 78
Q ss_pred eeeecCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 116 HVHVCKEEITSFTIMQHSN--YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~--~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
.+.+|++.|.++.|.|+-. .|++|..|++|++||+.....++.. ...|...|++++|.+ |+..
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-------------~~~H~S~vtsL~~~~--d~~~ 206 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-------------MILHKSAVTSLAFSE--DSLE 206 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH-------------HHhhhhheeeeeecc--CCce
Confidence 8899999999999999874 5899999999999999875421111 234578999999999 8999
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC-----CCEEEEEecCCeEEEEeCCCccccccc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI-----GSKVAVGYSNGEILIWGVPSILNLKTE 268 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~-----g~~l~sg~~dG~I~iWd~~~~~~~~~~ 268 (1042)
+++++.|..|.|||+.+-+.... ......+-++.+. ++ |.++.+++.+|.+++||..++......
T Consensus 207 ~ls~~RDkvi~vwd~~~~~~l~~---------lp~ye~~E~vv~l-~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~ 276 (775)
T KOG0319|consen 207 LLSVGRDKVIIVWDLVQYKKLKT---------LPLYESLESVVRL-REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQ 276 (775)
T ss_pred EEEeccCcEEEEeehhhhhhhhe---------echhhheeeEEEe-chhcCCcceEEEEecCCceEEEEecccchhhhhh
Confidence 99999999999999976554333 1223456666676 56 679999999999999999986322221
Q ss_pred cCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEE
Q 001628 269 ECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDME 348 (1042)
Q Consensus 269 ~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1042)
.... ..++ ..+..+ .....++.+.... +++.. +..+.+...........+.||.
T Consensus 277 ~~~~----~~e~-----------~~~~~~---~~~~~~l~vtaeQ-------nl~l~-d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 277 RQSD----SEEI-----------DHLLAI---ESMSQLLLVTAEQ-------NLFLY-DEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred ccCC----chhh-----------hcceec---cccCceEEEEccc-------eEEEE-EccccEEehhhcCCchhheeee
Confidence 1111 1011 111111 0111111111110 11111 1112223333445566788888
Q ss_pred EccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccch
Q 001628 349 IISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSAD 428 (1042)
Q Consensus 349 ~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~ 428 (1042)
++.. ..+.|+|.++.+.+++|+..+. ....+++|...|.++.
T Consensus 331 ~lG~-------e~~~laVATNs~~lr~y~~~~~------------------~c~ii~GH~e~vlSL~------------- 372 (775)
T KOG0319|consen 331 FLGP-------EESHLAVATNSPELRLYTLPTS------------------YCQIIPGHTEAVLSLD------------- 372 (775)
T ss_pred ecCC-------ccceEEEEeCCCceEEEecCCC------------------ceEEEeCchhheeeee-------------
Confidence 7732 3456899999999999984432 2335678888887776
Q ss_pred hHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEe
Q 001628 429 EDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYD 508 (1042)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fs 508 (1042)
....+.+|+||+.|.++++|.++.+....+. .....+|...|.+++++
T Consensus 373 --------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~~------~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 373 --------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSLC------VAQANGHTNSVGAVAGS 420 (775)
T ss_pred --------------------------ecccCcEEEEecCCceEEEEEecCCcchhhh------hhhhcccccccceeeec
Confidence 2234459999999999999988544322111 12227899999999998
Q ss_pred CCC-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEE
Q 001628 509 GTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVY 587 (1042)
Q Consensus 509 p~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~ 587 (1042)
..+ ..|++++.|+++++|.+...+.... ... .... .....|...|.+++++|+.+++|+|+.|.+.+
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~--------~~~~---~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAF-PIV--------LTCR---YTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccc-cce--------ehhh---HHHHhhcccccceEecCCCceEEeccccccee
Confidence 776 7899999999999999987333210 000 0000 22345779999999999999999999999999
Q ss_pred EEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 588 LLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 588 vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
||++....+. +.+| .-.|.++.|+| ..+.|+|+|.|++|++|.+++..++.++
T Consensus 489 iW~le~~~l~~vLsGH-----~RGvw~V~Fs~------~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 489 IWDLEQLRLLGVLSGH-----TRGVWCVSFSK------NDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred eecccCceEEEEeeCC-----ccceEEEEecc------ccceeEeccCCceEEEEEeccceeeeee
Confidence 9999977775 5555 44999999999 8999999999999999999988877776
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-39 Score=342.66 Aligned_cols=470 Identities=14% Similarity=0.147 Sum_probs=346.6
Q ss_pred eeeee-cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecC---CCcceEEEEEecCCCEEEEEeCCC--CE
Q 001628 31 LVFHY-GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESS---EAVSTKFLQFLENQGILLNVTSTN--LI 104 (1042)
Q Consensus 31 ~~~~~-G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~---~~~~v~~l~fs~~~~~Lvs~s~dg--~I 104 (1042)
.+..| +|.+.++...|+|.|-++|+|...|.|+|||.. +.++++..+ -..+|+.++|+.+++++++.++.. ..
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEecc-CcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34444 567788999999999999999999999999988 545555433 357999999999999999988753 23
Q ss_pred EEEEcCCCc-eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 105 EVWDIDKKR-LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 105 ~vWd~~~~~-~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
+++-.+++. +-.+.+|...|.+++|-|.. -++++|++|++|.+|.-... ++... ...|..-|.+
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF---------KFk~s-----~r~HskFV~~ 195 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF---------KFKSS-----FREHSKFVNC 195 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe---------eeeec-----ccccccceee
Confidence 444444555 88899999999999999988 46899999999999975443 22111 2336679999
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+.|+| ||.++++++.||.+.+||-.+++.+..+++ ...|.+.|.+++|+ ||+..|++++.|.+++|||+.+.
T Consensus 196 VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~-----~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 196 VRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELED-----SDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred EEECC--CCCeEEEecCCccEEEEcCCCccEEEEecC-----CCCccccEEEEEEC-CCCceEEEecCCceEEEEEeecc
Confidence 99999 999999999999999999999998888754 36899999999998 99999999999999999999974
Q ss_pred cccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCC
Q 001628 263 LNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSE 342 (1042)
Q Consensus 263 ~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 342 (1042)
...++ +.++.
T Consensus 268 slv~t------------~~~~~---------------------------------------------------------- 277 (603)
T KOG0318|consen 268 SLVST------------WPMGS---------------------------------------------------------- 277 (603)
T ss_pred ceEEE------------eecCC----------------------------------------------------------
Confidence 11111 11110
Q ss_pred CeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCcc
Q 001628 343 PCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSF 422 (1042)
Q Consensus 343 ~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~ 422 (1042)
.+.|+.+-+- =..+.|+.+.-+|.|.+++.... .+.....+|...||++..++++..
T Consensus 278 ~v~dqqvG~l------Wqkd~lItVSl~G~in~ln~~d~-----------------~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 278 TVEDQQVGCL------WQKDHLITVSLSGTINYLNPSDP-----------------SVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred chhceEEEEE------EeCCeEEEEEcCcEEEEecccCC-----------------ChhheecccccceeEEEEcCCCCE
Confidence 0000000000 01244677788888888883321 244566799999999999999999
Q ss_pred ccccchhHHHhhhhcCCCCCC--CCcCCCCCCccCCC-CccEEEEEeCCCcEEEEeCCCCcee------------eeeec
Q 001628 423 ILSSADEDYSLLAKSVPPLLD--FETKLKDGSQSHSK-VKNLFITGHSDGAINFWDVSCPLFL------------LILSL 487 (1042)
Q Consensus 423 ~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~tg~~Dg~IriWd~~~~~~~------------~l~~l 487 (1042)
+.+++-+..+.-|........ .+..+...+..+.. ....++|.+.|.++|+.++...... -+..+
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 999999988887774432211 12233333333222 2256778888999999977432110 01111
Q ss_pred ccc-----------------ccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCcc
Q 001628 488 KQQ-----------------SEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 550 (1042)
Q Consensus 488 ~~~-----------------~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~ 550 (1042)
.++ ..-....-+-...+++++|++.++|+|+.||.|+||.+.......+
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee-------------- 480 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE-------------- 480 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------------
Confidence 100 0000011234578899999999999999999999999988655332
Q ss_pred ceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEE
Q 001628 551 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 630 (1042)
Q Consensus 551 ~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s 630 (1042)
.....|.++|++++||||+.+||+|+..+.|.+||+.+.++. ...-.+|.+.|.+|+|+| +..++++
T Consensus 481 -----~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~--~~~w~FHtakI~~~aWsP------~n~~vAT 547 (603)
T KOG0318|consen 481 -----AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK--TNRWAFHTAKINCVAWSP------NNKLVAT 547 (603)
T ss_pred -----eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee--cceeeeeeeeEEEEEeCC------CceEEEe
Confidence 223334599999999999999999999999999999988773 333345777999999999 9999999
Q ss_pred EeCCceEEEEECC
Q 001628 631 ATKDSSVLVLDSD 643 (1042)
Q Consensus 631 ~s~Dg~V~vwd~~ 643 (1042)
|+-|.+|.||++.
T Consensus 548 GSlDt~Viiysv~ 560 (603)
T KOG0318|consen 548 GSLDTNVIIYSVK 560 (603)
T ss_pred ccccceEEEEEcc
Confidence 9999999999976
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-41 Score=340.28 Aligned_cols=363 Identities=13% Similarity=0.196 Sum_probs=276.2
Q ss_pred EecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q 001628 75 LESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQE 153 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~ 153 (1042)
+.+|. .+|.+++|+|++.+||+|+.|.++++||+.+.. ..+..+|...|.|++|+||++.|++|+.||+|++||..++
T Consensus 111 ~~GH~-e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 111 IAGHG-EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred cCCCC-CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 33444 688889999999999999999999999999998 7788999999999999999999999999999999999887
Q ss_pred ccceeeeeeecccccccCccccCCCCEEEEEEccC---CCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 154 SSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT---AESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 154 ~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~---~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
+... .+ ...|...|++++|.|. ....+|++++.||.|+|||+..+++++.. .+|..
T Consensus 190 ~~~g--~~-----------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------sgHT~ 248 (480)
T KOG0271|consen 190 QQIG--RA-----------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------SGHTA 248 (480)
T ss_pred Cccc--cc-----------ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------ccCcc
Confidence 6311 11 3557889999999883 14568999999999999999998887764 88999
Q ss_pred ceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEec
Q 001628 231 QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMG 310 (1042)
Q Consensus 231 ~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~g 310 (1042)
+|+|++|- ...++++|+.|++|++|+...+...+.... | -+|...
T Consensus 249 ~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkG-H---------------------ahwvN~----------- 293 (480)
T KOG0271|consen 249 SVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKG-H---------------------AHWVNH----------- 293 (480)
T ss_pred ceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcc-c---------------------chheee-----------
Confidence 99999995 567899999999999999988632222111 1 011110
Q ss_pred ccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCC
Q 001628 311 ASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS 390 (1042)
Q Consensus 311 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~ 390 (1042)
+.+..+ |+++.+
T Consensus 294 ------------------------------------------------------lalsTd-------------y~LRtg- 305 (480)
T KOG0271|consen 294 ------------------------------------------------------LALSTD-------------YVLRTG- 305 (480)
T ss_pred ------------------------------------------------------eeccch-------------hhhhcc-
Confidence 000000 001111
Q ss_pred CCCCCCCccceeccCCCCcceeEEEEeecCccccccch--hHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 391 RSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSAD--EDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 391 ~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
+|.+.+...-+... +..+..+... ....++.+++|+.|
T Consensus 306 ------------------------af~~t~~~~~~~se~~~~Al~rY~~~----------------~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 306 ------------------------AFDHTGRKPKSFSEEQKKALERYEAV----------------LKDSGERLVSGSDD 345 (480)
T ss_pred ------------------------ccccccccCCChHHHHHHHHHHHHHh----------------hccCcceeEEecCC
Confidence 11111111001000 1111111100 22334689999999
Q ss_pred CcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccC
Q 001628 469 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG 548 (1042)
Q Consensus 469 g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g 548 (1042)
.++.+|+-.... .++.++ .+|..-|..+.|+||++++|+++-|..|++|+-.+++... +|
T Consensus 346 ~tlflW~p~~~k-kpi~rm--------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la--sf--------- 405 (480)
T KOG0271|consen 346 FTLFLWNPFKSK-KPITRM--------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA--SF--------- 405 (480)
T ss_pred ceEEEecccccc-cchhhh--------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh--hh---------
Confidence 999999976432 233333 7899999999999999999999999999999999887755 55
Q ss_pred ccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEE
Q 001628 549 NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 628 (1042)
Q Consensus 549 ~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L 628 (1042)
.+|. ++|..++|+.|.++|++|+.|.+++|||+++.++. .-..+|...|.++.|+| ||..+
T Consensus 406 RGHv----------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~---~DLpGh~DEVf~vDwsp------DG~rV 466 (480)
T KOG0271|consen 406 RGHV----------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK---QDLPGHADEVFAVDWSP------DGQRV 466 (480)
T ss_pred hhcc----------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec---ccCCCCCceEEEEEecC------CCcee
Confidence 5777 99999999999999999999999999999998884 23335677999999999 99999
Q ss_pred EEEeCCceEEEEE
Q 001628 629 VIATKDSSVLVLD 641 (1042)
Q Consensus 629 ~s~s~Dg~V~vwd 641 (1042)
++|+.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 4
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-38 Score=343.54 Aligned_cols=529 Identities=18% Similarity=0.236 Sum_probs=376.0
Q ss_pred CCcCcee----eeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC
Q 001628 25 SDVDPRL----VFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS 100 (1042)
Q Consensus 25 ~~~~~~~----~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~ 100 (1042)
..||++. .+.+.....|++++.+|+|.+|.+....|+..+-+.. ...+.....-+.+|.+++|+|||+++|.+ .
T Consensus 38 sv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~-~r~Vlh~f~fk~~v~~i~fSPng~~fav~-~ 115 (893)
T KOG0291|consen 38 SVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLL-SRSVLHRFNFKRGVGAIKFSPNGKFFAVG-C 115 (893)
T ss_pred EEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecc-cceeeEEEeecCccceEEECCCCcEEEEE-e
Confidence 4566665 4556667899999999999999999999999988877 44445455556789999999999665554 5
Q ss_pred CCCEEEEEcCCCc---------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 101 TNLIEVWDIDKKR---------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 101 dg~I~vWd~~~~~---------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
.+.+.||...... ..+..+|-..|+++.|+.|.++|++|+.|-++++|.++..+- ..++.
T Consensus 116 gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~-------- 184 (893)
T KOG0291|consen 116 GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYA-------- 184 (893)
T ss_pred cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---cceEe--------
Confidence 6899999876432 235567888999999999999999999999999999988652 11222
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEe-----C----------Ccc-----------cccc
Q 001628 172 NEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSM-----G----------GNV-----------LQSV 225 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~-----~----------g~~-----------~~~~ 225 (1042)
..+|..+|.++-|.. +...+++.+.||.+.+|.....-....- . +.. ..-+
T Consensus 185 -l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 185 -LNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred -ccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 356789999999998 8999999999999999988721100000 0 000 0011
Q ss_pred cccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeE
Q 001628 226 YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASR 305 (1042)
Q Consensus 226 ~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~ 305 (1042)
......|++..|+ +.-..|++|-..|...++.+++-...+...-+ ..+|..+.|..
T Consensus 262 n~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis----------------~~~I~t~~~N~------- 317 (893)
T KOG0291|consen 262 NQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS----------------DQKILTVSFNS------- 317 (893)
T ss_pred cccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecc----------------cceeeEEEecc-------
Confidence 2334889999998 89999999999999999999873211111100 01222222221
Q ss_pred EEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEe-cCCceEEeecccceee
Q 001628 306 LYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLG-KSGHFYAFDDCQIERY 384 (1042)
Q Consensus 306 l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~-~~G~l~~~d~~~~e~~ 384 (1042)
..+.+.+.+ +-|+|.+|++.. |.|
T Consensus 318 ------------------------------------------------------tGDWiA~g~~klgQLlVweWqs-EsY 342 (893)
T KOG0291|consen 318 ------------------------------------------------------TGDWIAFGCSKLGQLLVWEWQS-ESY 342 (893)
T ss_pred ------------------------------------------------------cCCEEEEcCCccceEEEEEeec-cce
Confidence 011223333 347999999764 444
Q ss_pred eccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEE
Q 001628 385 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFIT 464 (1042)
Q Consensus 385 ~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 464 (1042)
++. ..+|...++|++|+||++ +++|
T Consensus 343 VlK----------------QQgH~~~i~~l~YSpDgq---------------------------------------~iaT 367 (893)
T KOG0291|consen 343 VLK----------------QQGHSDRITSLAYSPDGQ---------------------------------------LIAT 367 (893)
T ss_pred eee----------------ccccccceeeEEECCCCc---------------------------------------EEEe
Confidence 444 448999999999776666 9999
Q ss_pred EeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecc
Q 001628 465 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 544 (1042)
Q Consensus 465 g~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~ 544 (1042)
|+.||.|++||..++.+...+ ..|...|+.+.|+..++.|++.+.||+|+.||+....... +|
T Consensus 368 G~eDgKVKvWn~~SgfC~vTF----------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR--Tf----- 430 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTF----------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR--TF----- 430 (893)
T ss_pred ccCCCcEEEEeccCceEEEEe----------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee--ee-----
Confidence 999999999999998776555 8899999999999999999999999999999998876654 44
Q ss_pred cccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCC-cEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCC
Q 001628 545 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG-YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF 623 (1042)
Q Consensus 545 ~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg-~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~ 623 (1042)
..+. +-.-.|++..|.|.++++|+.|. .|.||+++++.++ ...++|.+||.+|+|+|
T Consensus 431 ----t~P~---------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll---DiLsGHEgPVs~l~f~~------ 488 (893)
T KOG0291|consen 431 ----TSPE---------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL---DILSGHEGPVSGLSFSP------ 488 (893)
T ss_pred ----cCCC---------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee---ehhcCCCCcceeeEEcc------
Confidence 2221 23457888888899999998876 6999999999995 33445677999999999
Q ss_pred CceEEEEEeCCceEEEEECCCC-ceeeeeecCCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEE
Q 001628 624 EKNFLVIATKDSSVLVLDSDNG-NMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVL 702 (1042)
Q Consensus 624 ~~~~L~s~s~Dg~V~vwd~~tg-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll 702 (1042)
++..|++++.|.+|++||.-.. ..+.+.++. +.++.+..-. .+..+.+
T Consensus 489 ~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~----sdvl~vsfrP---------------------------dG~elaV 537 (893)
T KOG0291|consen 489 DGSLLASGSWDKTVRIWDIFSSSGTVETLEIR----SDVLAVSFRP---------------------------DGKELAV 537 (893)
T ss_pred ccCeEEeccccceEEEEEeeccCceeeeEeec----cceeEEEEcC---------------------------CCCeEEE
Confidence 9999999999999999996522 233333222 1122221110 1124455
Q ss_pred EEecCceEEEecCccc-----cccceeE---------EEeeecCcCeeeEEEEEecCceEEEEEEecCeEEEEcCCCccc
Q 001628 703 LCSEKAACAYSLSHAV-----QGVKKVL---------YKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSL 768 (1042)
Q Consensus 703 ~~~~~~i~i~~~~~~~-----qg~~k~~---------~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp~l~~ 768 (1042)
+..++.|.+|+..... .| .+.+ +..+-....-++..+..+.++..++++..+..|.+|++|+.-+
T Consensus 538 aTldgqItf~d~~~~~q~~~Idg-rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDG-RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEecceEEEEEhhhceeeccccc-hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 5666788888876532 22 1111 1111111122333444457788888888999999999999888
Q ss_pred cccccc
Q 001628 769 LKETSI 774 (1042)
Q Consensus 769 ~~~~~~ 774 (1042)
+..+++
T Consensus 617 lkkfqi 622 (893)
T KOG0291|consen 617 LKKFQI 622 (893)
T ss_pred eeeEEe
Confidence 876654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=334.51 Aligned_cols=370 Identities=12% Similarity=0.162 Sum_probs=280.1
Q ss_pred CCcCceeeeee-----cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEE
Q 001628 25 SDVDPRLVFHY-----GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNV 98 (1042)
Q Consensus 25 ~~~~~~~~~~~-----G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~ 98 (1042)
+.|..|.+.|. ||.+.|.|++|+|+++.||+|+.|.++++||.+. ....+..+|. ..|.+++|+||+..|++|
T Consensus 97 avfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 97 AVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIASG 175 (480)
T ss_pred hhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc-cEEEEEEECCCcchhhcc
Confidence 45777777774 8999999999999999999999999999999883 3455666665 899999999999999999
Q ss_pred eCCCCEEEEEcCCCc--eeeeeecCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 99 TSTNLIEVWDIDKKR--LSHVHVCKEEITSFTIMQ-----HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 99 s~dg~I~vWd~~~~~--~~~~~~h~~~It~v~~sp-----~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
+.||+|++||..+++ -..+.+|...|++++|.| ..++|++++.||+|+|||+..+.+ + +.
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~----~~-------- 242 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-V----RT-------- 242 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-E----EE--------
Confidence 999999999999887 568899999999999975 558999999999999999988763 1 11
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC
Q 001628 172 NEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d 251 (1042)
..+|..+|+|+.|- ...++++|+.|++|++|+...|+. ...+.+|...|+.++.+ ..-.|=+|..|
T Consensus 243 -lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~--------~r~lkGHahwvN~lals--Tdy~LRtgaf~ 308 (480)
T KOG0271|consen 243 -LSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKL--------CRELKGHAHWVNHLALS--TDYVLRTGAFD 308 (480)
T ss_pred -eccCccceEEEEEc---CCceEEecCCCceEEEEEccchhH--------HHhhcccchheeeeecc--chhhhhccccc
Confidence 24468899999998 467899999999999999998554 44568899999999876 22223333322
Q ss_pred CeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccc
Q 001628 252 GEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTES 331 (1042)
Q Consensus 252 G~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~ 331 (1042)
.+ ++... .....+.....+.+. +
T Consensus 309 ~t--------~~~~~-~~se~~~~Al~rY~~--------------~---------------------------------- 331 (480)
T KOG0271|consen 309 HT--------GRKPK-SFSEEQKKALERYEA--------------V---------------------------------- 331 (480)
T ss_pred cc--------cccCC-ChHHHHHHHHHHHHH--------------h----------------------------------
Confidence 11 00000 000000000000000 0
Q ss_pred eeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcce
Q 001628 332 RTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSI 411 (1042)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~v 411 (1042)
....+..|+..+.++++.+|+... ...+...+.+|..-|
T Consensus 332 -------------------------~~~~~erlVSgsDd~tlflW~p~~----------------~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 332 -------------------------LKDSGERLVSGSDDFTLFLWNPFK----------------SKKPITRMTGHQALV 370 (480)
T ss_pred -------------------------hccCcceeEEecCCceEEEecccc----------------cccchhhhhchhhhe
Confidence 001123346666777888888211 112223455788888
Q ss_pred eEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccc
Q 001628 412 TAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQS 491 (1042)
Q Consensus 412 t~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~ 491 (1042)
..+.|+|+ +.++++++-|.+||+||..++....
T Consensus 371 n~V~fSPd---------------------------------------~r~IASaSFDkSVkLW~g~tGk~la-------- 403 (480)
T KOG0271|consen 371 NHVSFSPD---------------------------------------GRYIASASFDKSVKLWDGRTGKFLA-------- 403 (480)
T ss_pred eeEEECCC---------------------------------------ccEEEEeecccceeeeeCCCcchhh--------
Confidence 88885554 5599999999999999999886542
Q ss_pred cccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEe
Q 001628 492 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 571 (1042)
Q Consensus 492 ~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~s 571 (1042)
.+++|-.+|..++|+.|.++|++|+.|.+++||++.+.++.. .+ .+|. ..|.++.|+
T Consensus 404 --sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~--DL---------pGh~----------DEVf~vDws 460 (480)
T KOG0271|consen 404 --SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ--DL---------PGHA----------DEVFAVDWS 460 (480)
T ss_pred --hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc--cC---------CCCC----------ceEEEEEec
Confidence 338999999999999999999999999999999999876643 22 4555 999999999
Q ss_pred cCCcEEEEEecCCcEEEEe
Q 001628 572 RNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 572 pdg~~La~gs~dg~V~vwD 590 (1042)
|||..+++|+.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999994
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-37 Score=321.46 Aligned_cols=461 Identities=15% Similarity=0.205 Sum_probs=322.9
Q ss_pred cccCceEEEEEcCCCCEEEEEEcC----CeEEEEecCCCeEEEEecCCCcceEEEEEecCCC-EEEEEeCCCCEEEEEcC
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKD----GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQG-ILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~d----g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~ 110 (1042)
-+.++|..++|++++++||+.+.. |.+.+||.. +-...+.+|. ..|.++.|-|... +++++++|++|-+++-.
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG-~SvGei~GhS-r~ins~~~KpsRPfRi~T~sdDn~v~ffeGP 178 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG-NSVGEITGHS-RRINSVDFKPSRPFRIATGSDDNTVAFFEGP 178 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEecCC-Cccceeeccc-eeEeeeeccCCCceEEEeccCCCeEEEeeCC
Confidence 356899999999999888877654 778889877 6666677776 6788899999776 68999999999999855
Q ss_pred CCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 111 KKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 111 ~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
--+ ..+...|..-|.|+.|+|||.++++.+.||.|.+||-.+++. ...+.. ...|++.|.+++|+|
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-----vg~l~~------~~aHkGsIfalsWsP-- 245 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-----VGELED------SDAHKGSIFALSWSP-- 245 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----EEEecC------CCCccccEEEEEECC--
Confidence 544 456677899999999999999999999999999999888762 122211 345789999999999
Q ss_pred CCCeEEEEECCCeEEEEeccCCeeEEEeC-----------------------------------CcccccccccCCceeE
Q 001628 190 ESKRILIIFRDGLISLWDIRESKSIFSMG-----------------------------------GNVLQSVYHETKQVTS 234 (1042)
Q Consensus 190 d~~~lls~~~dg~I~vWd~~~~~~~~~~~-----------------------------------g~~~~~~~~~~~~I~~ 234 (1042)
|+.++++++.|.+++|||+.+++++..+. +..++...+|...|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 99999999999999999999988777651 1234556899999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEeccccc
Q 001628 235 ACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDF 314 (1042)
Q Consensus 235 l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~ 314 (1042)
+..+ +++.+|.+|+.||.|.-|+...+...+.....|. .. |..+. ....+.++.+|-++.
T Consensus 326 Ltv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~-nq--------------I~~~~----~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 326 LTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT-NQ--------------IKGMA----ASESGELFTIGWDDT 385 (603)
T ss_pred EEEc-CCCCEEEeeccCceEEEEecCCcccccccccccc-ce--------------EEEEe----ecCCCcEEEEecCCe
Confidence 9998 9999999999999999999998643322222221 11 11111 112233444333322
Q ss_pred CCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCC
Q 001628 315 VSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPP 394 (1042)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~ 394 (1042)
+.+..+....-..... .++.......... ....+++++....|.++.....-
T Consensus 386 -----l~~~~~~~~~~t~~~~--~~lg~QP~~lav~---------~d~~~avv~~~~~iv~l~~~~~~------------ 437 (603)
T KOG0318|consen 386 -----LRVISLKDNGYTKSEV--VKLGSQPKGLAVL---------SDGGTAVVACISDIVLLQDQTKV------------ 437 (603)
T ss_pred -----EEEEecccCcccccce--eecCCCceeEEEc---------CCCCEEEEEecCcEEEEecCCcc------------
Confidence 1111111000000000 1111111111111 11112333333344443311100
Q ss_pred CCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEE
Q 001628 395 SAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFW 474 (1042)
Q Consensus 395 ~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriW 474 (1042)
...| ..-..++++ .+|+++.++.|++||.|++|
T Consensus 438 -------~~~~-~~y~~s~vA---------------------------------------v~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 438 -------SSIP-IGYESSAVA---------------------------------------VSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred -------eeec-cccccceEE---------------------------------------EcCCCCEEEEecccceEEEE
Confidence 0000 001122233 66777899999999999999
Q ss_pred eCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceee
Q 001628 475 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 554 (1042)
Q Consensus 475 d~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 554 (1042)
.+....+.....+ ..|.++|++++|+||+.+||+|+..+.|.+|+........ ..+
T Consensus 471 sl~g~~l~ee~~~--------~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w--------------- 526 (603)
T KOG0318|consen 471 SLSGDELKEEAKL--------LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRW--------------- 526 (603)
T ss_pred EecCCcccceeee--------ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-cee---------------
Confidence 9998765433322 6789999999999999999999999999999998765522 122
Q ss_pred eEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCC
Q 001628 555 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 634 (1042)
Q Consensus 555 ~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~D 634 (1042)
..|.+.|.+|+|+|+..+||+|+-|-+|.||++..+.-. ..+...|...|++|.|- +...|++.+.|
T Consensus 527 ----~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-------de~tvvSsG~D 593 (603)
T KOG0318|consen 527 ----AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-------DESTVVSSGQD 593 (603)
T ss_pred ----eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-------cCceEEeccCc
Confidence 234499999999999999999999999999999877543 22223366689999999 79999999999
Q ss_pred ceEEEEECC
Q 001628 635 SSVLVLDSD 643 (1042)
Q Consensus 635 g~V~vwd~~ 643 (1042)
..|++|+..
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999853
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=330.13 Aligned_cols=470 Identities=17% Similarity=0.247 Sum_probs=333.8
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCC--EEEEEeCCCCEEEEEcCCCc
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQG--ILLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~--~Lvs~s~dg~I~vWd~~~~~ 113 (1042)
|.++|.-++|+|.+.+||+|+.||.|+|||..+ ...+.|.++. ..|..+.|+|+-. .|+++..|+++++||+.++.
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g-GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG-GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC-ceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 678899999999999999999999999999983 4566677765 7899999999754 58999999999999999776
Q ss_pred --eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC-
Q 001628 114 --LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE- 190 (1042)
Q Consensus 114 --~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d- 190 (1042)
+.....|.+.|++++|++++.-+++++.|..|.+||+...+. +...| . -..+.++.+-+ +
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-l~~lp----~----------ye~~E~vv~l~--~~ 245 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK-LKTLP----L----------YESLESVVRLR--EE 245 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh-hheec----h----------hhheeeEEEec--hh
Confidence 567788999999999999999999999999999999955432 11121 1 12455566655 4
Q ss_pred ----CCeEEEEECCCeEEEEeccCCeeEEEeCC-----------------------------------cccccccccCCc
Q 001628 191 ----SKRILIIFRDGLISLWDIRESKSIFSMGG-----------------------------------NVLQSVYHETKQ 231 (1042)
Q Consensus 191 ----~~~lls~~~dg~I~vWd~~~~~~~~~~~g-----------------------------------~~~~~~~~~~~~ 231 (1042)
+.++++++.+|.+++||..++++++.... ...+.+.+....
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 56899999999999999988764433210 111223556788
Q ss_pred eeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEE-EEEeCCCCeEEEEec
Q 001628 232 VTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLK-WVYADGKASRLYIMG 310 (1042)
Q Consensus 232 I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~-~~~~~~~~~~l~~~g 310 (1042)
|..++|..|+.+++++++..+.+++++..+.... ...+|. ..+.++. | ..+.++..+
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~---------------e~vlSL~~~-----~~g~llat~ 383 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHT---------------EAVLSLDVW-----SSGDLLATG 383 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCch---------------hheeeeeec-----ccCcEEEEe
Confidence 9999998888999999999999999988764211 222222 2233333 1 112222222
Q ss_pred ccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCC
Q 001628 311 ASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS 390 (1042)
Q Consensus 311 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~ 390 (1042)
+.+. +.-.|.+ -+.....-.+.........+..... .......++..+.|+.|.+|++..-+ ..
T Consensus 384 sKD~-svilWr~--~~~~~~~~~~a~~~gH~~svgava~-------~~~~asffvsvS~D~tlK~W~l~~s~------~~ 447 (775)
T KOG0319|consen 384 SKDK-SVILWRL--NNNCSKSLCVAQANGHTNSVGAVAG-------SKLGASFFVSVSQDCTLKLWDLPKSK------ET 447 (775)
T ss_pred cCCc-eEEEEEe--cCCcchhhhhhhhcccccccceeee-------cccCccEEEEecCCceEEEecCCCcc------cc
Confidence 2222 1112221 0000000000001111111111111 22344567888999999999943300 11
Q ss_pred CCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCc
Q 001628 391 RSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGA 470 (1042)
Q Consensus 391 ~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~ 470 (1042)
..++.+ ........|...|.|++++ |+..+++||+.|.+
T Consensus 448 ~~~~~~--~~~~t~~aHdKdIN~Vaia---------------------------------------~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 448 AFPIVL--TCRYTERAHDKDINCVAIA---------------------------------------PNDKLIATGSQDKT 486 (775)
T ss_pred ccccee--hhhHHHHhhcccccceEec---------------------------------------CCCceEEecccccc
Confidence 111110 0112344688888888854 44559999999999
Q ss_pred EEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCcc
Q 001628 471 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 550 (1042)
Q Consensus 471 IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~ 550 (1042)
.+||++....+..++ .+|...|+++.|+|..+.||+++.|++|+||.+++..... +| .+
T Consensus 487 aKiW~le~~~l~~vL----------sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk--T~---------eG 545 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVL----------SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK--TF---------EG 545 (775)
T ss_pred eeeecccCceEEEEe----------eCCccceEEEEeccccceeEeccCCceEEEEEeccceeee--ee---------cC
Confidence 999999955444333 8999999999999999999999999999999999876644 44 44
Q ss_pred ceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEE
Q 001628 551 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVI 630 (1042)
Q Consensus 551 ~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s 630 (1042)
|. ..|....|-.++..|++++.||.++||++.+.+.+ ...+.|...|++++-++ ....++|
T Consensus 546 H~----------~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~---~tlD~H~DrvWaL~~~~------~~~~~~t 606 (775)
T KOG0319|consen 546 HT----------SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE---MTLDAHNDRVWALSVSP------LLDMFVT 606 (775)
T ss_pred cc----------ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh---hhhhhccceeEEEeecC------ccceeEe
Confidence 54 99999999999999999999999999999998774 22234677999999999 8899999
Q ss_pred EeCCceEEEEECC
Q 001628 631 ATKDSSVLVLDSD 643 (1042)
Q Consensus 631 ~s~Dg~V~vwd~~ 643 (1042)
|+.||.|.+|.-.
T Consensus 607 gg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 607 GGGDGRIIFWKDV 619 (775)
T ss_pred cCCCeEEEEeecC
Confidence 9999999999743
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=304.52 Aligned_cols=587 Identities=12% Similarity=0.155 Sum_probs=399.6
Q ss_pred CceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 28 DPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 28 ~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
+.|.-+..|-...--.+.|+++|.-+.+-. .++|.+||...+...++.......|+.++.+|+|.+|++..+.|...+-
T Consensus 4 efrfsNllGTvyr~Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 4 EFRFSNLLGTVYRAGNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred ccchhhcccceeecCcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 344444455555666799999999876644 5789999988667788888888899999999999999999999999999
Q ss_pred EcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p 187 (1042)
++....+.........|.|+.|||+|+++++|..+ .+.||........ ...|+.. +....+|-..|+++.|+-
T Consensus 83 s~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~-~~~pFvl-----~r~~~g~fddi~si~Ws~ 155 (893)
T KOG0291|consen 83 SLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKN-EFNPFVL-----HRTYLGHFDDITSIDWSD 155 (893)
T ss_pred ecccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEecCcchhc-ccCcceE-----eeeecCCccceeEEEecc
Confidence 99888877777888999999999999999998765 7999998765310 1122222 222456778999999998
Q ss_pred CCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccccc
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKT 267 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~ 267 (1042)
|..++++|+.|.++++|+++..+..+ ...+.+|...|.+.-|. .+...+.+.+.||.+.+|..........
T Consensus 156 --DSr~l~~gsrD~s~rl~~v~~~k~~~------~~~l~gHkd~VvacfF~-~~~~~l~tvskdG~l~~W~~~~~P~~~~ 226 (893)
T KOG0291|consen 156 --DSRLLVTGSRDLSARLFGVDGNKNLF------TYALNGHKDYVVACFFG-ANSLDLYTVSKDGALFVWTCDLRPPELD 226 (893)
T ss_pred --CCceEEeccccceEEEEEeccccccc------eEeccCCCcceEEEEec-cCcceEEEEecCceEEEEEecCCCcccc
Confidence 99999999999999999999866422 34568899999999887 8999999999999999998874210000
Q ss_pred ----ccCCccccccccccCCCCCCCccceEEEEEE-----eCCCCeEEEEecccccCCCccEEEEeecccccceeEEEee
Q 001628 268 ----EECGTQITPICKLNLGYKLDKIPISSLKWVY-----ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLAL 338 (1042)
Q Consensus 268 ----~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~-----~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 338 (1042)
-.++.. .......+. .-+....|.. .+.....+..+.
T Consensus 227 ~~~kd~eg~~--d~~~~~~~E----ek~~~~~~~k~~k~~ln~~~~kvtaa~---------------------------- 272 (893)
T KOG0291|consen 227 KAEKDEEGSD--DEEMDEDGE----EKTHKIFWYKTKKHYLNQNSSKVTAAA---------------------------- 272 (893)
T ss_pred cccccccccc--cccccccch----hhhcceEEEEEEeeeecccccceeeee----------------------------
Confidence 000000 000000000 0111112221 000001111000
Q ss_pred CCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEee
Q 001628 339 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 418 (1042)
Q Consensus 339 ~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~ 418 (1042)
+......|++.-++|...+|+...... ...+...+.+|..+.
T Consensus 273 ------------------fH~~t~~lvvgFssG~f~LyelP~f~l-----------------ih~LSis~~~I~t~~--- 314 (893)
T KOG0291|consen 273 ------------------FHKGTNLLVVGFSSGEFGLYELPDFNL-----------------IHSLSISDQKILTVS--- 314 (893)
T ss_pred ------------------ccCCceEEEEEecCCeeEEEecCCceE-----------------EEEeecccceeeEEE---
Confidence 112335668888889999998322211 111122234455554
Q ss_pred cCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC-CcEEEEeCCCCceeeeeeccccccccCCC
Q 001628 419 GNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD-GAINFWDVSCPLFLLILSLKQQSEKDFSL 497 (1042)
Q Consensus 419 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D-g~IriWd~~~~~~~~l~~l~~~~~~~~~~ 497 (1042)
+...|+.++.|+.. |.+-+|+..... |.+++ .+
T Consensus 315 ------------------------------------~N~tGDWiA~g~~klgQLlVweWqsEs----YVlKQ------Qg 348 (893)
T KOG0291|consen 315 ------------------------------------FNSTGDWIAFGCSKLGQLLVWEWQSES----YVLKQ------QG 348 (893)
T ss_pred ------------------------------------ecccCCEEEEcCCccceEEEEEeeccc----eeeec------cc
Confidence 34445677777655 899999998764 33332 68
Q ss_pred CCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEE
Q 001628 498 SGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHL 577 (1042)
Q Consensus 498 ~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~L 577 (1042)
|...+++++++|||+++|+|+.||.|+||+....-+. +.|..|...|+.++|+.+|+.|
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~---------------------vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF---------------------VTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE---------------------EEeccCCCceEEEEEEecCCEE
Confidence 9999999999999999999999999999998764432 3344445999999999999999
Q ss_pred EEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCc-eEEEEECCCCceeeeeecC
Q 001628 578 AVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-SVLVLDSDNGNMLSTNLIH 654 (1042)
Q Consensus 578 a~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg-~V~vwd~~tg~~i~~~~~~ 654 (1042)
++.+-||+|+.||+...+-. |+... .....|++..| .|.+++.|+.|. .|+||+.+||+++.+..
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~----p~QfscvavD~------sGelV~AG~~d~F~IfvWS~qTGqllDiLs-- 475 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVAVDP------SGELVCAGAQDSFEIFVWSVQTGQLLDILS-- 475 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCC----ceeeeEEEEcC------CCCEEEeeccceEEEEEEEeecCeeeehhc--
Confidence 99999999999999876554 22221 22456777777 899999999885 79999999999997763
Q ss_pred CCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEE-EEecCceEEEecCccccccceeEEEeeecCc
Q 001628 655 PKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVL-LCSEKAACAYSLSHAVQGVKKVLYKKKFHSS 733 (1042)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll-~~~~~~i~i~~~~~~~qg~~k~~~~~~~~~~ 733 (1042)
-..+++.++..-. .+..|+ ..-++.+|+|++-.. .| . ..+++ -
T Consensus 476 -GHEgPVs~l~f~~----------------------------~~~~LaS~SWDkTVRiW~if~s-~~-~----vEtl~-i 519 (893)
T KOG0291|consen 476 -GHEGPVSGLSFSP----------------------------DGSLLASGSWDKTVRIWDIFSS-SG-T----VETLE-I 519 (893)
T ss_pred -CCCCcceeeEEcc----------------------------ccCeEEeccccceEEEEEeecc-Cc-e----eeeEe-e
Confidence 2334444433221 112233 344788999998642 11 1 11111 1
Q ss_pred CeeeEEEEEecCceEEEEEEecCeEEEEcCCCcccccccccc------ceeccCC----CCCCccccceeeccCCcEEEE
Q 001628 734 SCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIR------GFVYLTP----KPNSLSNTLMCSSWDGELIMV 803 (1042)
Q Consensus 734 ~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp~l~~~~~~~~~------~~~~~~~----~~~~~~~~~i~~s~~G~~~~~ 803 (1042)
.-....+...+.+..|++.+-||.|-+|+.-+...+..+... +..-..+ ..+.....+||+|.||..|+.
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA 599 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILA 599 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence 111122333478889999999999999999888777444322 1000000 012234677999999999999
Q ss_pred cCcceEEEEEeeccc
Q 001628 804 NGNQEAFFISALRQR 818 (1042)
Q Consensus 804 ~~~~~~~~~s~l~~~ 818 (1042)
.|.++-+++--..++
T Consensus 600 gG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 600 GGESNSICIYDVPEG 614 (893)
T ss_pred cCCcccEEEEECchh
Confidence 999988777666555
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=314.41 Aligned_cols=601 Identities=12% Similarity=0.169 Sum_probs=394.4
Q ss_pred CCCEEEEEEcCCeEEEEecC-CCeEEEEe-cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeE
Q 001628 49 LQKILAAATKDGRIKLYGRH-NNTQALLE-SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEIT 125 (1042)
Q Consensus 49 ~~~~LA~gs~dg~I~iw~~~-g~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It 125 (1042)
.|+++|+.. .-.|.+||.. |..+..+. ......|++++-+++...||.|-.||.|+||+..++. +..+.+|...|+
T Consensus 33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVSA-LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEec-cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 477777633 3569999987 33333333 3444689999999999889999999999999999887 778889999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEE
Q 001628 126 SFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISL 205 (1042)
Q Consensus 126 ~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~v 205 (1042)
++.|+..|.+|++|+.|+.|.+||+-.... .|+ ..+|+..|+...|.. +.+.+++.+.|+.|++
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-----l~r---------L~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEG-----LFR---------LRGHKDSITQALFLN--GDSFLVSVSKDSMIKF 175 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEecccee-----eEE---------eecchHHHhHHhccC--CCeEEEEeccCceEEE
Confidence 999999999999999999999999877652 122 245678999999996 6889999999999999
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYK 285 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~ 285 (1042)
||+.+..+..+. ..|...++++++. + ..+++++.|+.+++|++.... .....+.++..-..|..
T Consensus 176 WdL~tqhCf~Th--------vd~r~Eiw~l~~~-~--~~lvt~~~dse~~v~~L~~~~-----D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 176 WDLETQHCFETH--------VDHRGEIWALVLD-E--KLLVTAGTDSELKVWELAFED-----DEKETNRYISTKLRGTF 239 (888)
T ss_pred EecccceeeeEE--------ecccceEEEEEEe-c--ceEEEEecCCceEEEEeeccc-----ccccccccceeecccee
Confidence 999998776653 6789999999997 3 899999999999999994321 00000111111111110
Q ss_pred CCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeeccc-------------------cc-c--ee------EEEe
Q 001628 286 LDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQ-------------------TE-S--RT------TKLA 337 (1042)
Q Consensus 286 ~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~-------------------~~-~--~~------~~~~ 337 (1042)
.....-..+.... +...+++++.|.+. -.+.+.+..-.+- .+ . .. ..-.
T Consensus 240 ~rqsk~R~i~l~~--d~s~r~~~c~g~d~-~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 240 IRQSKGREINLVT--DFSDRFLVCQGADK-VIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred eeccCCceeEEee--cCcccEEEEecchh-hhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 0000001112221 22222333332221 0011111100000 00 0 00 0011
Q ss_pred eCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEe
Q 001628 338 LPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI 417 (1042)
Q Consensus 338 ~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~ 417 (1042)
.....++.++-.+++. ..... +++..+..++.|. ++......|..........++|++.|..++++
T Consensus 317 ir~~~kiks~dv~~~~-----~~~~~-lv~l~nNtv~~ys--------l~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSG-----GTENT-LVLLANNTVEWYS--------LENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred eechhheeEEEEEecC-----Cccee-EEEeecCceEEEE--------eccCCCCCccccccceeeeccchhheeEEEee
Confidence 1223445555555443 11223 4446666888877 33311222332234456778999999999999
Q ss_pred ecCccccccchhHHHhhhhcCCC--CCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccC
Q 001628 418 TGNSFILSSADEDYSLLAKSVPP--LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDF 495 (1042)
Q Consensus 418 ~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~ 495 (1042)
.+...+++++.+. +.+|..... ..++... ..-...|-|.++++++|...|.+.++|+.+..+. ..+
T Consensus 383 ~d~~~~~Sga~~S-ikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~----------Eti 450 (888)
T KOG0306|consen 383 SDSILLASGAGES-IKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV----------ETI 450 (888)
T ss_pred cCceeeeecCCCc-EEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh----------hhh
Confidence 9988877765543 344543311 1111111 1111128899999999999999999999887543 344
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCc--ccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC
Q 001628 496 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH--AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 573 (1042)
Q Consensus 496 ~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd 573 (1042)
..|.+.|++++.+||+..+++|+.|.+|++|++.-... .....++ .-+ +.........|.|+.+|||
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l--------sl~---~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL--------SLK---HTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee--------eec---cceEEeccccEEEEEEcCC
Confidence 79999999999999999999999999999999863221 1111111 111 1233344588999999999
Q ss_pred CcEEEEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 574 SQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 574 g~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
|++||+|--|.+|.||-+.+.+.. +.+|-. ||.|+..|| |+.+++||+.|..|+||-++=|.+-..+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-----PV~smDIS~------DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-----PVLSMDISP------DSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeeccccc-----ceeEEeccC------CcCeEEeccCCCceEEeccccchhhhhh
Confidence 999999999999999999987765 455544 999999999 9999999999999999999888877665
Q ss_pred ecCCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEecC-ceEEEecCccccccceeEEEeee
Q 001628 652 LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK-AACAYSLSHAVQGVKKVLYKKKF 730 (1042)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~~~-~i~i~~~~~~~qg~~k~~~~~~~ 730 (1042)
-.+.+ .+.++..+. ...++.+|+.+ .++-|+-.+. +.+.+..-
T Consensus 589 fAHdD---Svm~V~F~P----------------------------~~~~FFt~gKD~kvKqWDg~kF-----e~iq~L~~ 632 (888)
T KOG0306|consen 589 FAHDD---SVMSVQFLP----------------------------KTHLFFTCGKDGKVKQWDGEKF-----EEIQKLDG 632 (888)
T ss_pred hcccC---ceeEEEEcc----------------------------cceeEEEecCcceEEeechhhh-----hhheeecc
Confidence 33322 244444443 23456777765 4899976542 22323222
Q ss_pred cC--cCeeeEEEEEecCceEEEEEEecCeEEEEcCCC----cccccccc
Q 001628 731 HS--SSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPE----LSLLKETS 773 (1042)
Q Consensus 731 ~~--~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp~----l~~~~~~~ 773 (1042)
+. --|..+. +++..++....|..|++|..-+ |++..+..
T Consensus 633 H~~ev~cLav~----~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~E 677 (888)
T KOG0306|consen 633 HHSEVWCLAVS----PNGSFVVSSSHDKSIRLWERTDEILILEEEKEGE 677 (888)
T ss_pred chheeeeeEEc----CCCCeEEeccCCceeEeeeccCcceeeehhhhhh
Confidence 21 1122221 5667788888899999998877 55444433
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=315.84 Aligned_cols=447 Identities=17% Similarity=0.256 Sum_probs=339.6
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-ee
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LS 115 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~ 115 (1042)
...++|++-+|+.-+||+|..||.|+||+... ....++.+|. ..|+.|.|...|.+|++|+.|+.|.|||+-... +.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK-~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHK-AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccc-cceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 35799999999999999999999999999873 4455566665 789999999999999999999999999998877 88
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
.+.+|...||.+-|..+.++|++.+.|+.|++||++++.+-.. ...|.+.|.++++.+ +.++
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T--------------hvd~r~Eiw~l~~~~----~~lv 205 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET--------------HVDHRGEIWALVLDE----KLLV 205 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE--------------EecccceEEEEEEec----ceEE
Confidence 9999999999999999999999999999999999999874211 234678999999984 6899
Q ss_pred EEECCCeEEEEeccC------------------------CeeEEEe-----------C----------------------
Q 001628 196 IIFRDGLISLWDIRE------------------------SKSIFSM-----------G---------------------- 218 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~------------------------~~~~~~~-----------~---------------------- 218 (1042)
+++.|+.+++|++.. ++.+... |
T Consensus 206 t~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~K 285 (888)
T KOG0306|consen 206 TAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSK 285 (888)
T ss_pred EEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHH
Confidence 999999999999921 0000000 0
Q ss_pred ----------------------------------------------Cccc------------------------------
Q 001628 219 ----------------------------------------------GNVL------------------------------ 222 (1042)
Q Consensus 219 ----------------------------------------------g~~~------------------------------ 222 (1042)
++..
T Consensus 286 k~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~ 365 (888)
T KOG0306|consen 286 KLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTS 365 (888)
T ss_pred HHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccc
Confidence 0000
Q ss_pred -ccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCC
Q 001628 223 -QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 301 (1042)
Q Consensus 223 -~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~ 301 (1042)
-...+|...|.++|++ .+...+++| ..++|.+|+..+....++...+
T Consensus 366 ~i~~~GHR~dVRsl~vS-~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~------------------------------ 413 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVS-SDSILLASG-AGESIKIWNRDTLKCIRTITCG------------------------------ 413 (888)
T ss_pred eeeeccchhheeEEEee-cCceeeeec-CCCcEEEEEccCcceeEEeccc------------------------------
Confidence 0014566777777776 444444443 3457778877764222211110
Q ss_pred CCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccc
Q 001628 302 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 381 (1042)
Q Consensus 302 ~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 381 (1042)
.++ ...++ .....+++++++|.|.+||.+..
T Consensus 414 ---y~l--------------------------------------~~~Fv--------pgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 414 ---YIL--------------------------------------ASKFV--------PGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred ---cEE--------------------------------------EEEec--------CCCceEEEeccCCceEEEEeehh
Confidence 000 11111 12234688899999999996543
Q ss_pred eeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCC---------CCCCc----CC
Q 001628 382 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPL---------LDFET----KL 448 (1042)
Q Consensus 382 e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------~~~~~----~~ 448 (1042)
+ ..-..+.|.+.|..++.+|++...++++.|..+.+|+..... +...+ ..
T Consensus 445 ~-----------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 445 S-----------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred h-----------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 2 223456899999999999999999999999999999733111 11111 12
Q ss_pred CCCCcc--CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE
Q 001628 449 KDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 449 ~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw 526 (1042)
...+.+ ++|++.+|+.+--|.+|++|-+.+-.+. ..| .+|.-||.||..+||+.+++||+.|..|+||
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf--lsL--------YGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF--LSL--------YGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee--eee--------cccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 222333 8999999999999999999999865443 233 7999999999999999999999999999999
Q ss_pred EeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--Eeccccc
Q 001628 527 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIAS 604 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~ 604 (1042)
-++-+.+.. +| ..| +..|.++.|.|...++.+++.||.|+-||-..-..+ +.+
T Consensus 578 GLdFGDCHK--S~---------fAH----------dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~---- 632 (888)
T KOG0306|consen 578 GLDFGDCHK--SF---------FAH----------DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG---- 632 (888)
T ss_pred ccccchhhh--hh---------hcc----------cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc----
Confidence 998765533 33 344 599999999999999999999999999999876664 334
Q ss_pred ccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 605 DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 605 ~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
|.+.|++++.+| +|.++++++.|.+|++|...
T Consensus 633 -H~~ev~cLav~~------~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 633 -HHSEVWCLAVSP------NGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred -chheeeeeEEcC------CCCeEEeccCCceeEeeecc
Confidence 455999999999 99999999999999999844
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=300.81 Aligned_cols=284 Identities=14% Similarity=0.241 Sum_probs=248.6
Q ss_pred eecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecC--CCEEEEEeCCCCEEEEEcC
Q 001628 34 HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLEN--QGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~--~~~Lvs~s~dg~I~vWd~~ 110 (1042)
+.|-..+|+.+.|++++..||+|+-+|.++||..+ .....+|.+|. ..|.++.|+|. +..|++++.||++++|+++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-SRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 35777899999999999999999999999999987 35667788887 77888999997 5689999999999999999
Q ss_pred CCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 111 KKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 111 ~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
+.. +..+.+|..+|..++|+|+|++|++++-|.+-++||+.++..-+. ..+|...|.+++|+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------------QEGHs~~v~~iaf~~-- 313 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------------QEGHSKGVFSIAFQP-- 313 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------------hcccccccceeEecC--
Confidence 966 889999999999999999999999999999999999999863111 234678999999999
Q ss_pred CCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccccccc
Q 001628 190 ESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEE 269 (1042)
Q Consensus 190 d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~ 269 (1042)
||..+++|+.|..-+|||+++++++..+ .+|..+|.++.|+ |+|-.++||+.|++++|||++...
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L--------~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~------ 378 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFL--------AGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRS------ 378 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEe--------cccccceeeEeEC-CCceEEeecCCCCcEEEeeecccc------
Confidence 9999999999999999999999988875 7899999999998 999999999999999999998520
Q ss_pred CCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEE
Q 001628 270 CGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEI 349 (1042)
Q Consensus 270 ~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1042)
T Consensus 379 -------------------------------------------------------------------------------- 378 (459)
T KOG0272|consen 379 -------------------------------------------------------------------------------- 378 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchh
Q 001628 350 ISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADE 429 (1042)
Q Consensus 350 ~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~ 429 (1042)
....+|.|.+-|+.++|.|..
T Consensus 379 --------------------------------------------------~ly~ipAH~nlVS~Vk~~p~~--------- 399 (459)
T KOG0272|consen 379 --------------------------------------------------ELYTIPAHSNLVSQVKYSPQE--------- 399 (459)
T ss_pred --------------------------------------------------cceecccccchhhheEecccC---------
Confidence 002246888889999977633
Q ss_pred HHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeC
Q 001628 430 DYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 509 (1042)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp 509 (1042)
|.+|+|++.|++++||...+..+. +.+.+|...|.++++++
T Consensus 400 -----------------------------g~fL~TasyD~t~kiWs~~~~~~~----------ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 400 -----------------------------GYFLVTASYDNTVKIWSTRTWSPL----------KSLAGHEGKVISLDISP 440 (459)
T ss_pred -----------------------------CeEEEEcccCcceeeecCCCcccc----------hhhcCCccceEEEEecc
Confidence 358999999999999998876443 23389999999999999
Q ss_pred CCCEEEEEeccceEEEEE
Q 001628 510 TSRVLVSGDQSGMVRIFK 527 (1042)
Q Consensus 510 ~~~~Lasg~~dG~V~vw~ 527 (1042)
++.++++++.|.++++|.
T Consensus 441 d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCceEEEeccCceeeecc
Confidence 999999999999999995
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=292.85 Aligned_cols=281 Identities=18% Similarity=0.223 Sum_probs=239.0
Q ss_pred CCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEccCCcc
Q 001628 79 EAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQH--SNYMLLGDTAGKISVLKLDQESS 155 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~--~~~l~sg~~dG~I~vwd~~~~~~ 155 (1042)
...|+..+.|++++..|++|+-+|.++||+..+.. +..+.+|.+.|.++.|+|. +.-|++|+.||++++|++++...
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 35689999999999999999999999999998877 8899999999999999998 46899999999999999998641
Q ss_pred ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEE
Q 001628 156 QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSA 235 (1042)
Q Consensus 156 ~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l 235 (1042)
+.. ..+|...|..++||| +|.+|++++.|.+-++||+.++.. +-...+|...|.++
T Consensus 254 -l~~-------------l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~E--------lL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 254 -LQD-------------LEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSE--------LLLQEGHSKGVFSI 309 (459)
T ss_pred -hhh-------------hhcchhhheeeeecC--CCceeeecccccchhhcccccchh--------hHhhccccccccee
Confidence 111 234567999999999 999999999999999999999653 33458999999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccC
Q 001628 236 CWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFV 315 (1042)
Q Consensus 236 ~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~ 315 (1042)
+|. +||..+++|+.|..-+|||+++++
T Consensus 310 af~-~DGSL~~tGGlD~~~RvWDlRtgr---------------------------------------------------- 336 (459)
T KOG0272|consen 310 AFQ-PDGSLAATGGLDSLGRVWDLRTGR---------------------------------------------------- 336 (459)
T ss_pred Eec-CCCceeeccCccchhheeecccCc----------------------------------------------------
Confidence 998 999999999999999999999852
Q ss_pred CCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCC
Q 001628 316 SMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 395 (1042)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~ 395 (1042)
.|.+++
T Consensus 337 --------------------------------------------------------~im~L~------------------ 342 (459)
T KOG0272|consen 337 --------------------------------------------------------CIMFLA------------------ 342 (459)
T ss_pred --------------------------------------------------------EEEEec------------------
Confidence 111222
Q ss_pred CCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEe
Q 001628 396 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWD 475 (1042)
Q Consensus 396 l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd 475 (1042)
+|..+|..+.|+|+| -.++||+.|++++|||
T Consensus 343 ----------gH~k~I~~V~fsPNG---------------------------------------y~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 343 ----------GHIKEILSVAFSPNG---------------------------------------YHLATGSSDNTCKVWD 373 (459)
T ss_pred ----------ccccceeeEeECCCc---------------------------------------eEEeecCCCCcEEEee
Confidence 677777777755554 4899999999999999
Q ss_pred CCCCceeeeeeccccccccCCCCCCCeEEEEEeC-CCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceee
Q 001628 476 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 554 (1042)
Q Consensus 476 ~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp-~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 554 (1042)
+..... ++.+ .+|..-|+.|.|+| .|.+|++++.|++++||...+..... ++ .+|.
T Consensus 374 LR~r~~--ly~i--------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k--sL---------aGHe-- 430 (459)
T KOG0272|consen 374 LRMRSE--LYTI--------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK--SL---------AGHE-- 430 (459)
T ss_pred eccccc--ceec--------ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch--hh---------cCCc--
Confidence 997654 4544 89999999999999 67999999999999999987655432 22 4554
Q ss_pred eEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 555 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 555 ~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
+.|.++.+++|+.++++++.|.++++|.
T Consensus 431 --------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 --------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-32 Score=284.00 Aligned_cols=334 Identities=19% Similarity=0.311 Sum_probs=269.1
Q ss_pred ecccCceEEEEEcCCCC-EEEEEEcCCeEEEEecCC-----CeEEEEe---------cCCCcceEEEEEecCCCEEEEEe
Q 001628 35 YGFPSGCNKFAYDPLQK-ILAAATKDGRIKLYGRHN-----NTQALLE---------SSEAVSTKFLQFLENQGILLNVT 99 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~-~LA~gs~dg~I~iw~~~g-----~~~~~~~---------~~~~~~v~~l~fs~~~~~Lvs~s 99 (1042)
.+|.+.|.+.+|.|... +||+|+.|-..++|++.. ..+..|+ .+....|++|+|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34788999999999887 999999999999999861 1222222 22346799999999999999999
Q ss_pred CCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCC
Q 001628 100 STNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 100 ~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
.||.+++|+.....+.++..|.++|.++.|+..|.||++|+-||++.+||..++... ..+.+ |..+
T Consensus 255 ~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~---q~f~~-----------~s~~ 320 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK---QQFEF-----------HSAP 320 (524)
T ss_pred cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE---Eeeee-----------ccCC
Confidence 999999999999999999999999999999999999999999999999999887631 11111 3345
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeC
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~ 259 (1042)
-..|.|. +...+++.+.||.|+|+.+...+++..+ .+|.++|.++.|. |.|..|++++.|++++||+.
T Consensus 321 ~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~--------~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 321 ALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTF--------IGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred ccceEEe---cCceEeecCCCceEEEEEecCCCcceee--------ecccCceEEEEEC-CCCceEEEecCCCeeEeeec
Confidence 5678888 5677999999999999999987776654 7899999999997 99999999999999999997
Q ss_pred CCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeC
Q 001628 260 PSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALP 339 (1042)
Q Consensus 260 ~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 339 (1042)
.......
T Consensus 389 ~~~~~~~------------------------------------------------------------------------- 395 (524)
T KOG0273|consen 389 GQSNSVH------------------------------------------------------------------------- 395 (524)
T ss_pred CCCcchh-------------------------------------------------------------------------
Confidence 7531000
Q ss_pred CCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeec
Q 001628 340 LSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG 419 (1042)
Q Consensus 340 ~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~ 419 (1042)
.+..|...|..+.++|.
T Consensus 396 ---------------------------------------------------------------~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 396 ---------------------------------------------------------------DLQAHSKEIYTIKWSPT 412 (524)
T ss_pred ---------------------------------------------------------------hhhhhccceeeEeecCC
Confidence 01134444444444444
Q ss_pred CccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC
Q 001628 420 NSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 499 (1042)
Q Consensus 420 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~ 499 (1042)
++ +...+..+..+++++.|++|++||+..+.+...+ ..|.
T Consensus 413 g~------------------------------v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----------~kH~ 452 (524)
T KOG0273|consen 413 GP------------------------------VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----------MKHQ 452 (524)
T ss_pred CC------------------------------ccCCCcCCceEEEeecCCeEEEEEccCCceeEee----------ccCC
Confidence 43 0112234558999999999999999988655433 7899
Q ss_pred CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEE
Q 001628 500 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 579 (1042)
Q Consensus 500 ~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~ 579 (1042)
.+|.+++|+|++++||+|+.||.|.+|+........ + .+. ++.|..|+|+.+|.+|.+
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~--s----------~~~----------~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK--S----------YQG----------TGGIFELCWNAAGDKLGA 510 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccchheeE--e----------ecC----------CCeEEEEEEcCCCCEEEE
Confidence 999999999999999999999999999998776643 1 222 277999999999999999
Q ss_pred EecCCcEEEEecc
Q 001628 580 GSDQGYVYLLDTE 592 (1042)
Q Consensus 580 gs~dg~V~vwD~~ 592 (1042)
+..||.+.+.|++
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999999986
No 14
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-31 Score=281.30 Aligned_cols=469 Identities=13% Similarity=0.152 Sum_probs=328.2
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-ee
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LS 115 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~ 115 (1042)
+...|.++.|+|...++.++-.+|.|.||+.+....+.--.-...||++..|.+..+++++|++|..|+|+|..+.+ +.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 45689999999999999999999999999998433332223345899999999999999999999999999999988 88
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
.+..|++-|.|++++|...+++++++|-+|++||.+..-. .... ..+|..-|.+++|+|. |.+.++
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa----~~qt---------feGH~HyVMqv~fnPk-D~ntFa 157 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA----CEQT---------FEGHEHYVMQVAFNPK-DPNTFA 157 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee----eeeE---------EcCcceEEEEEEecCC-Ccccee
Confidence 9999999999999999999999999999999999998631 1111 2345669999999998 899999
Q ss_pred EEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEc-cCCCEEEEEecCCeEEEEeCCCccccccccCCccc
Q 001628 196 IIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWAC-PIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQI 274 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~-~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~ 274 (1042)
+++-|++|+||.+.+..+.+++ .+|...|.|++|-+ .|..+|++|++|.+|+|||..+..
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl--------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~----------- 218 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTL--------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS----------- 218 (794)
T ss_pred eeeccccEEEEEcCCCCCceee--------eccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-----------
Confidence 9999999999999997777664 78999999999972 234699999999999999998720
Q ss_pred cccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCC
Q 001628 275 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSS 354 (1042)
Q Consensus 275 ~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (1042)
.+
T Consensus 219 -CV----------------------------------------------------------------------------- 220 (794)
T KOG0276|consen 219 -CV----------------------------------------------------------------------------- 220 (794)
T ss_pred -HH-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhh
Q 001628 355 DPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLL 434 (1042)
Q Consensus 355 ~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~ 434 (1042)
..+.+|...|.++.|.|.-+
T Consensus 221 -----------------------------------------------~TLeGHt~Nvs~v~fhp~lp------------- 240 (794)
T KOG0276|consen 221 -----------------------------------------------QTLEGHTNNVSFVFFHPELP------------- 240 (794)
T ss_pred -----------------------------------------------HHhhcccccceEEEecCCCc-------------
Confidence 11236777777777555444
Q ss_pred hhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEE
Q 001628 435 AKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 514 (1042)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~L 514 (1042)
+++||++||+||||+..+-.+ ++.+.....+|+||+-.+.++.+
T Consensus 241 --------------------------iiisgsEDGTvriWhs~Ty~l----------E~tLn~gleRvW~I~~~k~~~~i 284 (794)
T KOG0276|consen 241 --------------------------IIISGSEDGTVRIWNSKTYKL----------EKTLNYGLERVWCIAAHKGDGKI 284 (794)
T ss_pred --------------------------EEEEecCCccEEEecCcceeh----------hhhhhcCCceEEEEeecCCCCeE
Confidence 899999999999999887543 33335566899999999999999
Q ss_pred EEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEE----EecCCcEEEEe
Q 001628 515 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV----GSDQGYVYLLD 590 (1042)
Q Consensus 515 asg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~----gs~dg~V~vwD 590 (1042)
++|...|.|.+ ++....... ++ .+.-.+-|+..+...++ .+.++ +
T Consensus 285 ~vG~Deg~i~v-~lgreeP~v--sM-----------------------d~~gKIiwa~~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 285 AVGFDEGSVTV-KLGREEPAV--SM-----------------------DSNGKIIWAVHSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred EEeccCCcEEE-EccCCCCce--ee-----------------------cCCccEEEEcCceeeeeeceeccCcc-----c
Confidence 99999987754 332211110 00 11112333332222111 11111 3
Q ss_pred ccCCeEE-EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecCCCCCCCceEEEEecC
Q 001628 591 TEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNG 669 (1042)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~~ 669 (1042)
+..++.+ +...-.....-....|+-+| +|+++++++ ||.-.||-.-. .+.+.-+..
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsP------NGrfV~Vcg-dGEyiIyTala--------~RnK~fG~~-------- 390 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSP------NGRFVVVCG-DGEYIIYTALA--------LRNKAFGSG-------- 390 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCC------CCcEEEEec-CccEEEEEeee--------hhhcccccc--------
Confidence 3344333 22111100111345666666 888887777 88888886321 111111111
Q ss_pred CCcCccCccccccccCCCCCCCCCCCC--CCcEEEEEecCceEEEecCccccccceeEEEeeecCcCeeeEEEEEecCce
Q 001628 670 QDGLARGANLSNVAGMNKGSPKENAVP--KQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDV 747 (1042)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~g~~v~~~~~--~~~~ll~~~~~~i~i~~~~~~~qg~~k~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1042)
.++.|. .+.|.+--+...+.+|.... +....... ..+.. -.+.
T Consensus 391 ---------------------~eFvw~~dsne~avRes~~~vki~knfk-------e~ksi~~~-~~~e~------i~gg 435 (794)
T KOG0276|consen 391 ---------------------LEFVWAADSNEFAVRESNGNVKIFKNFK-------EHKSIRPD-MSAEG------IFGG 435 (794)
T ss_pred ---------------------eeEEEcCCCCeEEEEecCCceEEEecce-------eccccccc-cceee------ecCC
Confidence 112221 24667777778888884322 11111111 11111 2355
Q ss_pred EEEEEEecCeEEEEcCCCccccccccccceeccCCCCCCccccceeeccCCcEEEEcCcceEEEEEe
Q 001628 748 GLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISA 814 (1042)
Q Consensus 748 ~lv~~~~~g~I~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~G~~~~~~~~~~~~~~s~ 814 (1042)
.|+.+.+++.+.+|+|.+.+++..+... .+.+.|++||+++++.++.....+-.
T Consensus 436 ~Llg~~ss~~~~fydW~~~~lVrrI~v~-------------~k~v~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 436 PLLGVRSSDFLCFYDWESGELVRRIEVT-------------SKHVYWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred ceEEEEeCCeEEEEEcccceEEEEEeec-------------cceeEEecCCCEEEEEecCceeEEEe
Confidence 6889999999999999999999988733 46789999999999999887555443
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-31 Score=259.77 Aligned_cols=210 Identities=10% Similarity=0.188 Sum_probs=182.3
Q ss_pred CCcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCC
Q 001628 25 SDVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNL 103 (1042)
Q Consensus 25 ~~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~ 103 (1042)
-.+..|+ ...||.++|.++.|+++.++|++++.||.+.|||.- ++.++.+..+. ..|...+|+|.++++++|+-||.
T Consensus 43 i~~~~rr-~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 43 IQMRTRR-TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred eeeeeEE-EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEECCCCCeEEecCcCce
Confidence 3455553 346899999999999999999999999999999976 34555666665 78999999999999999999999
Q ss_pred EEEEEcCCC--c-----eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccC
Q 001628 104 IEVWDIDKK--R-----LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 104 I~vWd~~~~--~-----~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~ 176 (1042)
..||++.+. + ...+.+|.+.+.|+.|.+ ...|++|+.|.++.+||+++++. ... ..+|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~--~~~------------f~GH 185 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ--TQV------------FHGH 185 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE--EEE------------ecCC
Confidence 999999865 2 346789999999999977 66789999999999999999862 111 2457
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEE
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILI 256 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~i 256 (1042)
.+.|.++.+.|. +++.+++|+.|+..+|||++.+.++..| .+|+..|.+++|. |+|.-|++|+.|++.++
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF--------~ghesDINsv~ff-P~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTF--------EGHESDINSVRFF-PSGDAFATGSDDATCRL 255 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEee--------cccccccceEEEc-cCCCeeeecCCCceeEE
Confidence 899999999997 8999999999999999999998776664 8899999999998 99999999999999999
Q ss_pred EeCCC
Q 001628 257 WGVPS 261 (1042)
Q Consensus 257 Wd~~~ 261 (1042)
||++.
T Consensus 256 yDlRa 260 (343)
T KOG0286|consen 256 YDLRA 260 (343)
T ss_pred EeecC
Confidence 99987
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=255.73 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=241.0
Q ss_pred EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001628 73 ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 73 ~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~ 151 (1042)
.++++|. ..|.++.|++|.++|++++.||.+.|||.-+.. ...+.-....|..++|+|.+++++.|+-|....||++.
T Consensus 49 r~LkGH~-~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHL-NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccc-cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 5677776 789999999999999999999999999987765 66666677899999999999999999999999999998
Q ss_pred CCccc-eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 152 QESSQ-IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 152 ~~~~~-~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
...-. ....... ...|.+-+.++.|-+ .++|++++.|.+..+||+++++.+..| .+|..
T Consensus 128 ~~d~~g~~~v~r~---------l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f--------~GH~g 187 (343)
T KOG0286|consen 128 TRDAEGNVRVSRE---------LAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVF--------HGHTG 187 (343)
T ss_pred cccccccceeeee---------ecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEe--------cCCcc
Confidence 65210 1111111 345788999999995 667999999999999999998876665 78999
Q ss_pred ceeEEEEEcc-CCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEe
Q 001628 231 QVTSACWACP-IGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIM 309 (1042)
Q Consensus 231 ~I~~l~~~~~-~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~ 309 (1042)
.|.++.++ | +++.|++|+.|+..++||++++.
T Consensus 188 DV~slsl~-p~~~ntFvSg~cD~~aklWD~R~~~---------------------------------------------- 220 (343)
T KOG0286|consen 188 DVMSLSLS-PSDGNTFVSGGCDKSAKLWDVRSGQ---------------------------------------------- 220 (343)
T ss_pred cEEEEecC-CCCCCeEEecccccceeeeeccCcc----------------------------------------------
Confidence 99999998 7 99999999999999999999730
Q ss_pred cccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCC
Q 001628 310 GASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQ 389 (1042)
Q Consensus 310 gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~ 389 (1042)
+ +
T Consensus 221 -----------c---------------------------------------------------~---------------- 222 (343)
T KOG0286|consen 221 -----------C---------------------------------------------------V---------------- 222 (343)
T ss_pred -----------e---------------------------------------------------e----------------
Confidence 0 0
Q ss_pred CCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCC
Q 001628 390 SRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDG 469 (1042)
Q Consensus 390 ~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg 469 (1042)
...++|++.|..+.|.|++ .-++||+.|+
T Consensus 223 ------------qtF~ghesDINsv~ffP~G---------------------------------------~afatGSDD~ 251 (343)
T KOG0286|consen 223 ------------QTFEGHESDINSVRFFPSG---------------------------------------DAFATGSDDA 251 (343)
T ss_pred ------------EeecccccccceEEEccCC---------------------------------------CeeeecCCCc
Confidence 1124788888888865554 4899999999
Q ss_pred cEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCc
Q 001628 470 AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGN 549 (1042)
Q Consensus 470 ~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~ 549 (1042)
+.|+||+.......+|.- .....+|++++|+..|++|..|..|.++.+||.-..+..
T Consensus 252 tcRlyDlRaD~~~a~ys~--------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v--------------- 308 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSH--------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV--------------- 308 (343)
T ss_pred eeEEEeecCCcEEeeecc--------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceE---------------
Confidence 999999998766666631 233479999999999999999999999999997654331
Q ss_pred cceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 550 SHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 550 ~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
..+.+|...|++|..+|||.-|++|+.|.+++||.
T Consensus 309 ------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 33445669999999999999999999999999994
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=249.14 Aligned_cols=278 Identities=15% Similarity=0.256 Sum_probs=225.7
Q ss_pred CEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---eeeeeecCCCeEE
Q 001628 51 KILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LSHVHVCKEEITS 126 (1042)
Q Consensus 51 ~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~~~It~ 126 (1042)
-+||+++.|.+|++|... |....+++++. ..|..|...|+++.|++++. -.|++||+.+.. +.++.+|.+.|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD-SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc-cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 489999999999999987 45556666555 78999999999998888865 679999999877 6788999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEE
Q 001628 127 FTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLW 206 (1042)
Q Consensus 127 v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vW 206 (1042)
+.|..+|+++++|++||+++|||+....+ +- ...+..+|+++..+| +...|+++..+|.|++|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~---qR------------~~~~~spVn~vvlhp--nQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC---QR------------NYQHNSPVNTVVLHP--NQTELISGDQSGNIRVW 151 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc---ch------------hccCCCCcceEEecC--CcceEEeecCCCcEEEE
Confidence 99999999999999999999999988542 11 223467999999999 88999999999999999
Q ss_pred eccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCC
Q 001628 207 DIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKL 286 (1042)
Q Consensus 207 d~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 286 (1042)
|+.+..+.... .......|.++... |||..++.+...|..++|++.... ...
T Consensus 152 Dl~~~~c~~~l-------iPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~------~~s-------------- 203 (311)
T KOG0315|consen 152 DLGENSCTHEL-------IPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQ------TAS-------------- 203 (311)
T ss_pred EccCCcccccc-------CCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCC------ccc--------------
Confidence 99987544332 24456789999998 999999999999999999987520 000
Q ss_pred CCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEE
Q 001628 287 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLL 366 (1042)
Q Consensus 287 ~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~v 366 (1042)
T Consensus 204 -------------------------------------------------------------------------------- 203 (311)
T KOG0315|consen 204 -------------------------------------------------------------------------------- 203 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCc
Q 001628 367 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET 446 (1042)
Q Consensus 367 l~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 446 (1042)
+-.+..+++.|...++.+.|+|+++
T Consensus 204 ------------------------------~l~P~~k~~ah~~~il~C~lSPd~k------------------------- 228 (311)
T KOG0315|consen 204 ------------------------------ELEPVHKFQAHNGHILRCLLSPDVK------------------------- 228 (311)
T ss_pred ------------------------------cceEhhheecccceEEEEEECCCCc-------------------------
Confidence 0001123457777777777665554
Q ss_pred CCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE
Q 001628 447 KLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 447 ~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw 526 (1042)
+|+|++.|.+++||+.++- +..-. .+.+|...++..+||.|+.+|++|+.|+.+++|
T Consensus 229 --------------~lat~ssdktv~iwn~~~~-~kle~--------~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 229 --------------YLATCSSDKTVKIWNTDDF-FKLEL--------VLTGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred --------------EEEeecCCceEEEEecCCc-eeeEE--------EeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 9999999999999999875 33222 237888999999999999999999999999999
Q ss_pred EeccCCc
Q 001628 527 KLKYEPH 533 (1042)
Q Consensus 527 ~~~~~~~ 533 (1042)
++..++.
T Consensus 286 ~~~~~k~ 292 (311)
T KOG0315|consen 286 DLSAGKE 292 (311)
T ss_pred ccccCce
Confidence 9987765
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-29 Score=271.92 Aligned_cols=608 Identities=15% Similarity=0.172 Sum_probs=370.4
Q ss_pred CCcCceeeee--eccc-CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEe--
Q 001628 25 SDVDPRLVFH--YGFP-SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVT-- 99 (1042)
Q Consensus 25 ~~~~~~~~~~--~G~~-~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s-- 99 (1042)
+++.-+.+.+ .|+. .....+|.+|...++|.-.. ..|.+|+.+...+..+...+..++++++|+++|+|+++|-
T Consensus 21 EqLs~k~~L~kVlGlTv~~~~gLa~~p~Sgl~aYpAG-CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 21 EQLSTKLILQKVLGLTVKNANGLASVPCSGLCAYPAG-CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred hhhhhhhhhHhhhceEeecCCcccccccccceeeccC-cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccC
Confidence 3444443333 3543 34467889999888887543 6688999884444444444557999999999999999986
Q ss_pred CCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCccceeeeeeecccccccCccccC
Q 001628 100 STNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDT--AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 100 ~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~--dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~ 176 (1042)
....++||++.... +..+..|...|+|++|+|.++|+++.+. |-.|.+||+..... ... ..-
T Consensus 100 ~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~---~as------------nki 164 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS---GAS------------NKI 164 (1080)
T ss_pred CCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccc---ccc------------ccc
Confidence 45569999998876 8899999999999999999999996554 55778888765421 000 011
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEe----C-----Ccc--------------------------
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSM----G-----GNV-------------------------- 221 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~----~-----g~~-------------------------- 221 (1042)
...|..++|+. ++.++++++ +..|++|.++.++..... | |+.
T Consensus 165 ss~Vsav~fsE--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qG 241 (1080)
T KOG1408|consen 165 SSVVSAVAFSE--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQG 241 (1080)
T ss_pred ceeEEEEEEcc--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccc
Confidence 35789999998 899988887 467899999876611110 0 000
Q ss_pred ----------cccc-cccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCcc
Q 001628 222 ----------LQSV-YHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIP 290 (1042)
Q Consensus 222 ----------~~~~-~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~p 290 (1042)
+..| ........|+|. +..+|++|+.+|.|++++..+.....+++..+. ++..
T Consensus 242 hLvEFSsRRLLDKWVqcRTTnAnCIcV---s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha--------lg~d----- 305 (1080)
T KOG1408|consen 242 HLVEFSSRRLLDKWVQCRTTNANCICV---SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA--------LGSD----- 305 (1080)
T ss_pred ceeeechhhhhhhhhhhhccccceeee---ecceEEEeeccceeeecCcchhhhccccccccc--------cccc-----
Confidence 0000 011223344544 478999999999999999876422222221111 0000
Q ss_pred ceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecC
Q 001628 291 ISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKS 370 (1042)
Q Consensus 291 i~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~ 370 (1042)
+..+. ....+ +..+.+..+-|.+.. .+......|.++-++
T Consensus 306 ~a~~~------q~~~~-----------------------------~s~~~~a~fPD~IA~-----~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 306 TANLS------QPEPK-----------------------------NSESSPAIFPDAIAC-----QFDETTDKLSCVYND 345 (1080)
T ss_pred hhhcc------ccccc-----------------------------ccccCcccCCceeEE-----EecCCCceEEEEEcC
Confidence 00000 00000 000001111111100 011234567888899
Q ss_pred CceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCC
Q 001628 371 GHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKD 450 (1042)
Q Consensus 371 G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1042)
..|++||.+....+- ....+-+|...|..+.-.|- .++....
T Consensus 346 hSlYvWDvrD~~kvg--------------k~~s~lyHS~ciW~Ve~~p~-----------------------nv~~~~~- 387 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVG--------------KCSSMLYHSACIWDVENLPC-----------------------NVHSPTA- 387 (1080)
T ss_pred ceEEEEecccccccc--------------ceeeeeeccceeeeeccccc-----------------------cccCccc-
Confidence 999999966543211 01112245555544442221 1111100
Q ss_pred CCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeecc---------------ccc------------cccCCCCCCCeE
Q 001628 451 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLK---------------QQS------------EKDFSLSGIPLT 503 (1042)
Q Consensus 451 ~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~---------------~~~------------~~~~~~~~~~V~ 503 (1042)
..-....++|++.||+||+||+.....-.+|+-+ .+. ..........+.
T Consensus 388 ----aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R 463 (1080)
T KOG1408|consen 388 ----ACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFR 463 (1080)
T ss_pred ----ccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceE
Confidence 1111235999999999999999874222222110 000 011123446799
Q ss_pred EEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC---CcEEEEE
Q 001628 504 ALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN---SQHLAVG 580 (1042)
Q Consensus 504 ~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd---g~~La~g 580 (1042)
+++.+|++++||+|+..|.++||++....... + ..+|...|.||.||.- .++||++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~---~------------------~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTC---F------------------MEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhhhh---h------------------eecccceeEEEeecCchhhhHhhhhc
Confidence 99999999999999999999999997654422 2 2234599999999852 4689999
Q ss_pred ecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCc--eEEEEEeCCceEEEEEC---CCCceeeeeecCC
Q 001628 581 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEK--NFLVIATKDSSVLVLDS---DNGNMLSTNLIHP 655 (1042)
Q Consensus 581 s~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~--~~L~s~s~Dg~V~vwd~---~tg~~i~~~~~~~ 655 (1042)
+.|..|.|||+.....+. ....+|++.|+++.|.- .| ..+++.+.|..|.+--. .+|+..... .+.
T Consensus 523 srdRlIHV~Dv~rny~l~--qtld~HSssITsvKFa~------~gln~~MiscGADksimFr~~qk~~~g~~f~r~-t~t 593 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLV--QTLDGHSSSITSVKFAC------NGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-TQT 593 (1080)
T ss_pred cCCceEEEEecccccchh--hhhcccccceeEEEEee------cCCceEEEeccCchhhheehhccccCceecccc-ccc
Confidence 999999999997665542 33355889999999996 55 68889999988764321 113222111 000
Q ss_pred CCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCC-CcEEEEEecCceEEEecCccccccceeEEEeeecCcC
Q 001628 656 KKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK-QWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSS 734 (1042)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~ll~~~~~~i~i~~~~~~~qg~~k~~~~~~~~~~~ 734 (1042)
.... +++.|. ..+. ...+.+|.++.||||.+.+. ..+..||..-. ..
T Consensus 594 ~~kt------------------TlYDm~----------Vdp~~k~v~t~cQDrnirif~i~sg---Kq~k~FKgs~~-~e 641 (1080)
T KOG1408|consen 594 LSKT------------------TLYDMA----------VDPTSKLVVTVCQDRNIRIFDIESG---KQVKSFKGSRD-HE 641 (1080)
T ss_pred cccc------------------eEEEee----------eCCCcceEEEEecccceEEEecccc---ceeeeeccccc-CC
Confidence 1111 111111 1111 13366677889999999862 11113332211 11
Q ss_pred eeeEEEEEecCceEEEEEEecCeEEEEcCCCccccccccccceeccCCCCCCccccceeeccCCcEEEEcCcceEEEEEe
Q 001628 735 CCWASTFYSGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISA 814 (1042)
Q Consensus 735 ~~~~~~~~~~~~~~lv~~~~~g~I~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~G~~~~~~~~~~~~~~s~ 814 (1042)
-..+.+.-.+.+..|++-++|.++.+|++-..+.+.++.-|. ..+.-+-|++|...++....+..++|+-
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs----------E~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS----------EAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc----------hheeeeeecccchhheeecCCceEEEEE
Confidence 122333333677789999999999999999999999998776 3345566778886665555578888888
Q ss_pred ecccccc
Q 001628 815 LRQRDFF 821 (1042)
Q Consensus 815 l~~~~~~ 821 (1042)
|..++..
T Consensus 712 lp~~mii 718 (1080)
T KOG1408|consen 712 LPLTMII 718 (1080)
T ss_pred CchhHhH
Confidence 8776544
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=5.8e-30 Score=249.80 Aligned_cols=299 Identities=15% Similarity=0.226 Sum_probs=236.2
Q ss_pred eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
..++.+|++.|+.++..+.. +.+++++.|-++.+|++..... .|-.|... ..+|...|..+..++ |++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-----~~G~~~r~----~~GHsH~v~dv~~s~--dg~ 76 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-----KYGVPVRR----LTGHSHFVSDVVLSS--DGN 76 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-----ccCceeee----eeccceEecceEEcc--CCc
Confidence 45778999999999999885 7889999999999999987642 11111111 234567899999999 999
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
+.++++.|+.+++||+.+++....+ .+|...|.+++++ +|...+++|+.|.+|++|++....
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f--------~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~c--------- 138 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRF--------VGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVC--------- 138 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEE--------EecCCceEEEEec-CCCceeecCCCcceeeeeeecccE---------
Confidence 9999999999999999998766654 8899999999998 999999999999999999987620
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
.|
T Consensus 139 ---------------------------------k~--------------------------------------------- 140 (315)
T KOG0279|consen 139 ---------------------------------KY--------------------------------------------- 140 (315)
T ss_pred ---------------------------------EE---------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
-+.+ ..++.-|+|+.|+|+..
T Consensus 141 -------------t~~~-----------------------------------~~~~~WVscvrfsP~~~----------- 161 (315)
T KOG0279|consen 141 -------------TIHE-----------------------------------DSHREWVSCVRFSPNES----------- 161 (315)
T ss_pred -------------EEec-----------------------------------CCCcCcEEEEEEcCCCC-----------
Confidence 0000 02356688888887742
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 512 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~ 512 (1042)
..++++++.|++|++||+.+-.+.. .+.+|...++.++++|||.
T Consensus 162 --------------------------~p~Ivs~s~DktvKvWnl~~~~l~~----------~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 162 --------------------------NPIIVSASWDKTVKVWNLRNCQLRT----------TFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred --------------------------CcEEEEccCCceEEEEccCCcchhh----------ccccccccEEEEEECCCCC
Confidence 2389999999999999999865543 3378999999999999999
Q ss_pred EEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEecc
Q 001628 513 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 513 ~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~ 592 (1042)
++++|+.||.+.+||++..+... + ..+. ..|.+++|+|+.-.|+.+...+ |+|||+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~ly--s----------l~a~----------~~v~sl~fspnrywL~~at~~s-IkIwdl~ 262 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLY--S----------LEAF----------DIVNSLCFSPNRYWLCAATATS-IKIWDLE 262 (315)
T ss_pred EEecCCCCceEEEEEccCCceeE--e----------ccCC----------CeEeeEEecCCceeEeeccCCc-eEEEecc
Confidence 99999999999999998765522 1 3454 8999999999888887777654 9999999
Q ss_pred CCeEE--Eecccccc----cCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 593 GPTVL--YQKHIASD----ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 593 ~~~~~--~~~~~~~~----~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
++.++ ++...... ..-.-.+++|++ +|..|++|-.|+.|++|.+.
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~------dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSA------DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcC------CCcEEEeeecCCcEEEEEee
Confidence 98887 22222111 112456888998 99999999999999999854
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.4e-29 Score=247.09 Aligned_cols=205 Identities=17% Similarity=0.230 Sum_probs=179.7
Q ss_pred ecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecC------CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 35 YGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRH------NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~------g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
-||++.|+.++..+. -..|.++++|..|.+|+.. |.++..+.+|. ..|..+..++++++.++++.|+++++|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-H~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-HFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc-eEecceEEccCCceEEeccccceEEEE
Confidence 488999999999987 5689999999999999876 56788888855 789999999999999999999999999
Q ss_pred EcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 108 DIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 108 d~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
|+.+++ ...+.+|...|.+++|+++...+++|+.|.+|++|+.-... .|++. ...+...|.|+.|+
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~-------~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIH-------EDSHREWVSCVRFS 157 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE------EEEEe-------cCCCcCcEEEEEEc
Confidence 999987 77888999999999999999999999999999999988764 23331 11225799999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
|+.+..+|++++.|++|++||+++-+ ..+.+.+|.+.++.++++ |||..+++|+.||.+.+||++.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~--------l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQ--------LRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcc--------hhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCC
Confidence 96447899999999999999999854 344568899999999998 99999999999999999999974
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=253.98 Aligned_cols=340 Identities=16% Similarity=0.248 Sum_probs=256.9
Q ss_pred CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001628 70 NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVL 148 (1042)
Q Consensus 70 ~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vw 148 (1042)
.-..+|..|. .+|-++..+|+.+++++|+.|..-.+|++.++. +..+.+|+..|+|+.|+.++.+||+|+.+|.|+||
T Consensus 55 dS~~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 4556676666 778889999999999999999999999999998 77889999999999999999999999999999999
Q ss_pred EccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccccc
Q 001628 149 KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHE 228 (1042)
Q Consensus 149 d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~ 228 (1042)
+..++....... ..-..+.=+.||| .+..|+.|+.||.+.+|.+.++... +.+.+|
T Consensus 134 ~~stg~~~~~~~--------------~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~--------kv~~Gh 189 (399)
T KOG0296|consen 134 KVSTGGEQWKLD--------------QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALC--------KVMSGH 189 (399)
T ss_pred EcccCceEEEee--------------cccCceEEEEecc--cccEEEeecCCCcEEEEECCCccee--------eEecCC
Confidence 999986311110 1124677799999 7999999999999999999985433 345789
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEE
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 308 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~ 308 (1042)
..++++-.|. |+|..+++++.||+|++|+..++ .|+.++
T Consensus 190 ~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg------------~p~~~~---------------------------- 228 (399)
T KOG0296|consen 190 NSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTG------------QPLHKI---------------------------- 228 (399)
T ss_pred CCCccccccc-CCCceEEEEecCceEEEEecCCC------------ceeEEe----------------------------
Confidence 9999999999 99999999999999999999985 111000
Q ss_pred ecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccC
Q 001628 309 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 388 (1042)
Q Consensus 309 ~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~ 388 (1042)
++...
T Consensus 229 -~~~e~-------------------------------------------------------------------------- 233 (399)
T KOG0296|consen 229 -TQAEG-------------------------------------------------------------------------- 233 (399)
T ss_pred -ccccc--------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 389 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
...+|+. +...+..+++|..+
T Consensus 234 --------------------~~~~~~~---------------------------------------~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 234 --------------------LELPCIS---------------------------------------LNLAGSTLTKGNSE 254 (399)
T ss_pred --------------------CcCCccc---------------------------------------cccccceeEeccCC
Confidence 0000111 22333456666667
Q ss_pred CcEEEEeCCCCceeeeeec-cccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeeccccc
Q 001628 469 GAINFWDVSCPLFLLILSL-KQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 547 (1042)
Q Consensus 469 g~IriWd~~~~~~~~l~~l-~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~ 547 (1042)
+.+++-+..++.......- .+............|.++.+|..-.+.|+|+-||+|.|||+....... .
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~----~------- 323 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH----I------- 323 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe----e-------
Confidence 7666666655543322210 000000001122456666667777899999999999999998765533 1
Q ss_pred CccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCc
Q 001628 548 GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEK 625 (1042)
Q Consensus 548 g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~ 625 (1042)
-.|. .+|+.+.|-+ ..+|++++.||.|+.||.+++.+. |.+|.. +|.+++.+| +.
T Consensus 324 -c~he----------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-----~Il~f~ls~------~~ 380 (399)
T KOG0296|consen 324 -CEHE----------DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-----GILDFALSP------QK 380 (399)
T ss_pred -ccCC----------CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-----heeEEEEcC------CC
Confidence 3444 8899999998 899999999999999999999887 666655 999999999 99
Q ss_pred eEEEEEeCCceEEEEECC
Q 001628 626 NFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 626 ~~L~s~s~Dg~V~vwd~~ 643 (1042)
++++|++.|++.+||+..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 999999999999999854
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-28 Score=273.07 Aligned_cols=292 Identities=15% Similarity=0.244 Sum_probs=236.2
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eee
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSH 116 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~ 116 (1042)
+.|..++|+|.+.++.++-.+|.|++||.. |.....|..|. .||+.+.|+|.+.++|+|++|-.|+||+..+++ +.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd-GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC-CccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 467789999999999999999999999987 45555555554 899999999999999999999999999999988 788
Q ss_pred eeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 117 VHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 117 ~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
+.+|-+-|..+.|++.-.|++++++|-+|+||++.++.+ +. . ..+|..-|.|..|+| ....+++
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-ia-v------------ltGHnHYVMcAqFhp--tEDlIVS 152 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IA-V------------LTGHNHYVMCAQFHP--TEDLIVS 152 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EE-E------------EecCceEEEeeccCC--ccceEEE
Confidence 999999999999999999999999999999999999874 11 1 234567999999999 6788999
Q ss_pred EECCCeEEEEeccCCeeEEEeC-----------------C-c---ccccccccCCceeEEEEEccCCCEEEEEecCCeEE
Q 001628 197 IFRDGLISLWDIRESKSIFSMG-----------------G-N---VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEIL 255 (1042)
Q Consensus 197 ~~~dg~I~vWd~~~~~~~~~~~-----------------g-~---~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~ 255 (1042)
++-|.+|+|||+..-+.-.... | . .-..+.+|...|.-++|+ |.-..|++|++|..|+
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVK 231 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceee
Confidence 9999999999997532111100 1 0 123458899999999998 9999999999999999
Q ss_pred EEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEE
Q 001628 256 IWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTK 335 (1042)
Q Consensus 256 iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~ 335 (1042)
+|.+....
T Consensus 232 lWrmnetK------------------------------------------------------------------------ 239 (1202)
T KOG0292|consen 232 LWRMNETK------------------------------------------------------------------------ 239 (1202)
T ss_pred EEEecccc------------------------------------------------------------------------
Confidence 99988620
Q ss_pred EeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEE
Q 001628 336 LALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMK 415 (1042)
Q Consensus 336 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~ 415 (1042)
.|+.. +..+|..+|+++-
T Consensus 240 ---------------------------------------aWEvD-----------------------tcrgH~nnVssvl 257 (1202)
T KOG0292|consen 240 ---------------------------------------AWEVD-----------------------TCRGHYNNVSSVL 257 (1202)
T ss_pred ---------------------------------------ceeeh-----------------------hhhcccCCcceEE
Confidence 22211 1237888888887
Q ss_pred EeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccC
Q 001628 416 LITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDF 495 (1042)
Q Consensus 416 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~ 495 (1042)
|+|..+++++.++|++||+||+........+
T Consensus 258 ---------------------------------------fhp~q~lIlSnsEDksirVwDm~kRt~v~tf---------- 288 (1202)
T KOG0292|consen 258 ---------------------------------------FHPHQDLILSNSEDKSIRVWDMTKRTSVQTF---------- 288 (1202)
T ss_pred ---------------------------------------ecCccceeEecCCCccEEEEecccccceeee----------
Confidence 5666679999999999999999977544333
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 496 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 496 ~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
+....+.+.++.+|..+++|.|-..| +.||++....
T Consensus 289 rrendRFW~laahP~lNLfAAgHDsG-m~VFkleREr 324 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFAAGHDSG-MIVFKLERER 324 (1202)
T ss_pred eccCCeEEEEEecCCcceeeeecCCc-eEEEEEcccC
Confidence 44557899999999999999766555 6688887543
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=240.21 Aligned_cols=288 Identities=17% Similarity=0.224 Sum_probs=227.0
Q ss_pred CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee
Q 001628 134 NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS 213 (1042)
Q Consensus 134 ~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~ 213 (1042)
-+|++++-|.+|++|...++.+ ....+ ..++.|..+...| ++..|++++ ...|++||++++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C-~rTiq-------------h~dsqVNrLeiTp--dk~~LAaa~-~qhvRlyD~~S~np 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC-SRTIQ-------------HPDSQVNRLEITP--DKKDLAAAG-NQHVRLYDLNSNNP 73 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE-EEEEe-------------cCccceeeEEEcC--Ccchhhhcc-CCeeEEEEccCCCC
Confidence 5789999999999999999875 22221 1357899999999 787676665 56799999999762
Q ss_pred EEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceE
Q 001628 214 IFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISS 293 (1042)
Q Consensus 214 ~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~ 293 (1042)
+...++.+|...|+++.|. .+|..+++|+.||+++|||++....
T Consensus 74 ------~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~----------------------------- 117 (311)
T KOG0315|consen 74 ------NPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSC----------------------------- 117 (311)
T ss_pred ------CceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCccc-----------------------------
Confidence 3345668999999999998 7999999999999999999986200
Q ss_pred EEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCce
Q 001628 294 LKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHF 373 (1042)
Q Consensus 294 l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l 373 (1042)
.+
T Consensus 118 ----------qR-------------------------------------------------------------------- 119 (311)
T KOG0315|consen 118 ----------QR-------------------------------------------------------------------- 119 (311)
T ss_pred ----------ch--------------------------------------------------------------------
Confidence 00
Q ss_pred EEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCc
Q 001628 374 YAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ 453 (1042)
Q Consensus 374 ~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (1042)
.| .|.++|+++.
T Consensus 120 -~~-----------------------------~~~spVn~vv-------------------------------------- 131 (311)
T KOG0315|consen 120 -NY-----------------------------QHNSPVNTVV-------------------------------------- 131 (311)
T ss_pred -hc-----------------------------cCCCCcceEE--------------------------------------
Confidence 00 1234455555
Q ss_pred cCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCc
Q 001628 454 SHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 533 (1042)
Q Consensus 454 ~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~ 533 (1042)
.+|+..-|++|.++|.|++||+....+...+ +.....+|+++...|+|.+|+.+...|...+|++.....
T Consensus 132 -lhpnQteLis~dqsg~irvWDl~~~~c~~~l---------iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 132 -LHPNQTELISGDQSGNIRVWDLGENSCTHEL---------IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred -ecCCcceEEeecCCCcEEEEEccCCcccccc---------CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc
Confidence 4455558999999999999999876443222 133457999999999999999999999999999987433
Q ss_pred ccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEE
Q 001628 534 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 613 (1042)
Q Consensus 534 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 613 (1042)
..+..|...+.+|++-+..+.+|||+++||+++.|.+|+||+.++- +.+...+ .+|...+...
T Consensus 202 ---------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l-~gh~rWvWdc 264 (311)
T KOG0315|consen 202 ---------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVL-TGHQRWVWDC 264 (311)
T ss_pred ---------------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEe-ecCCceEEee
Confidence 3344555788899999999999999999999999999999999887 2222221 2355699999
Q ss_pred EEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeec
Q 001628 614 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 653 (1042)
Q Consensus 614 ~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~ 653 (1042)
+||. |+.||++|+.|+.+++||+.+|+.+....-
T Consensus 265 ~FS~------dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 265 AFSA------DGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eecc------CccEEEecCCCCceeecccccCceeeecCC
Confidence 9998 999999999999999999999998877743
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=251.79 Aligned_cols=342 Identities=16% Similarity=0.185 Sum_probs=266.2
Q ss_pred ceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 29 PRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 29 ~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
-..+--.+|..+|.+++.+|+.+++|+|+.|-.-.||+.. |.....+.+|. ..|+++.|+.++.+||+|+-+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK-DSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK-DSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC-CceEEEEEccCceEEEecCCCccEEEE
Confidence 3344556899999999999999999999999999999987 34444444554 789999999999999999999999999
Q ss_pred EcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 108 DIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 108 d~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
...++. ...+..--..|.-+.|+|.+..|+.|+.||.|.+|.+..+. ..++ ..+|..++++=.|.
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--~~kv------------~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--LCKV------------MSGHNSPCTCGEFI 199 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--eeeE------------ecCCCCCccccccc
Confidence 999998 44454455678889999999999999999999999999864 2222 23467899999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccc
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLK 266 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~ 266 (1042)
| +|.++++++.||+|++||..++++++...+. ......++.++ ..+..++.|..++.+++-+..++.
T Consensus 200 p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-------e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sgK--- 266 (399)
T KOG0296|consen 200 P--DGKRILTGYDDGTIIVWNPKTGQPLHKITQA-------EGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSGK--- 266 (399)
T ss_pred C--CCceEEEEecCceEEEEecCCCceeEEeccc-------ccCcCCccccc-cccceeEeccCCccEEEEccccce---
Confidence 9 9999999999999999999999988876432 24566777787 789999999999999988776641
Q ss_pred cccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeee
Q 001628 267 TEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCID 346 (1042)
Q Consensus 267 ~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1042)
T Consensus 267 -------------------------------------------------------------------------------- 266 (399)
T KOG0296|consen 267 -------------------------------------------------------------------------------- 266 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCcccccc
Q 001628 347 MEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS 426 (1042)
Q Consensus 347 ~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~ 426 (1042)
++.+.+|. .+...+.+...+.|+.+.|-..
T Consensus 267 ------------------Vv~~~n~~---------------------------~~~l~~~~e~~~esve~~~~ss----- 296 (399)
T KOG0296|consen 267 ------------------VVNCNNGT---------------------------VPELKPSQEELDESVESIPSSS----- 296 (399)
T ss_pred ------------------EEEecCCC---------------------------Cccccccchhhhhhhhhccccc-----
Confidence 00000000 0000112222333333222211
Q ss_pred chhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEE
Q 001628 427 ADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 506 (1042)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~ 506 (1042)
.=.+.|+|+-||+|.|||+....++.++ .|..+|+.+.
T Consensus 297 -------------------------------~lpL~A~G~vdG~i~iyD~a~~~~R~~c-----------~he~~V~~l~ 334 (399)
T KOG0296|consen 297 -------------------------------KLPLAACGSVDGTIAIYDLAASTLRHIC-----------EHEDGVTKLK 334 (399)
T ss_pred -------------------------------ccchhhcccccceEEEEecccchhheec-----------cCCCceEEEE
Confidence 1127899999999999999988776554 5667899999
Q ss_pred EeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcE
Q 001628 507 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYV 586 (1042)
Q Consensus 507 fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V 586 (1042)
|-+ ..+|++++.+|.|+.||..++.... .+.+|+.+|.+++++|+.+++++++.|++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~---------------------~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKF---------------------TYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEE---------------------EEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 999 8899999999999999998765522 234455999999999999999999999999
Q ss_pred EEEecc
Q 001628 587 YLLDTE 592 (1042)
Q Consensus 587 ~vwD~~ 592 (1042)
+||+..
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999864
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.8e-29 Score=261.22 Aligned_cols=322 Identities=16% Similarity=0.216 Sum_probs=257.5
Q ss_pred CCcceEEEEEecCCC-EEEEEeCCCCEEEEEcCCCc----e-eee----------eecCCCeEEEEEeCCCCEEEEEeCC
Q 001628 79 EAVSTKFLQFLENQG-ILLNVTSTNLIEVWDIDKKR----L-SHV----------HVCKEEITSFTIMQHSNYMLLGDTA 142 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~~~~----~-~~~----------~~h~~~It~v~~sp~~~~l~sg~~d 142 (1042)
+..+|...+|.|-.. .|++++.|-+.++|++.... . ..+ ......||+++|+.+|.+|++|..|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 557899899999655 89999999999999987521 1 000 0122579999999999999999999
Q ss_pred CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccc
Q 001628 143 GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL 222 (1042)
Q Consensus 143 G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~ 222 (1042)
|.+++|+.+...... ...|+++|.++.|+. .|++|++++.|+++.+||..++.....+
T Consensus 257 G~~riw~~~G~l~~t---------------l~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f----- 314 (524)
T KOG0273|consen 257 GEARIWNKDGNLIST---------------LGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQF----- 314 (524)
T ss_pred cEEEEEecCchhhhh---------------hhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEee-----
Confidence 999999998865211 234789999999999 8999999999999999999987755443
Q ss_pred ccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCC
Q 001628 223 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGK 302 (1042)
Q Consensus 223 ~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~ 302 (1042)
..|..+-..+.|. +...|++.+.||.|+++.+... .|+
T Consensus 315 ---~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~------------~P~------------------------- 352 (524)
T KOG0273|consen 315 ---EFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED------------RPV------------------------- 352 (524)
T ss_pred ---eeccCCccceEEe--cCceEeecCCCceEEEEEecCC------------Ccc-------------------------
Confidence 5677776788996 7888999999999999988752 111
Q ss_pred CeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccce
Q 001628 303 ASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIE 382 (1042)
Q Consensus 303 ~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e 382 (1042)
T Consensus 353 -------------------------------------------------------------------------------- 352 (524)
T KOG0273|consen 353 -------------------------------------------------------------------------------- 352 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEE
Q 001628 383 RYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLF 462 (1042)
Q Consensus 383 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 462 (1042)
.+..+|...|.++.|.|. +.+|
T Consensus 353 -------------------~t~~GH~g~V~alk~n~t---------------------------------------g~LL 374 (524)
T KOG0273|consen 353 -------------------KTFIGHHGEVNALKWNPT---------------------------------------GSLL 374 (524)
T ss_pred -------------------eeeecccCceEEEEECCC---------------------------------------CceE
Confidence 011257778888885544 4499
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC---------CEEEEEeccceEEEEEeccCCc
Q 001628 463 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS---------RVLVSGDQSGMVRIFKLKYEPH 533 (1042)
Q Consensus 463 ~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~---------~~Lasg~~dG~V~vw~~~~~~~ 533 (1042)
++++.|++++||+...... .+++..|...|..+.|+|.+ ..+++++.|++|++|++.....
T Consensus 375 aS~SdD~TlkiWs~~~~~~----------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNS----------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEecCCCeeEeeecCCCcc----------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999776543 24557899999999999965 4789999999999999976443
Q ss_pred ccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEE
Q 001628 534 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 613 (1042)
Q Consensus 534 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 613 (1042)
. ..|..|..+|.+|+|+|+|++||+|+.||.|.+|+++.+.+...-. ....|..|
T Consensus 445 i---------------------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----~~~~Ifel 499 (524)
T KOG0273|consen 445 I---------------------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----GTGGIFEL 499 (524)
T ss_pred e---------------------EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec----CCCeEEEE
Confidence 2 3345556999999999999999999999999999999998862111 12379999
Q ss_pred EEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 614 QFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 614 ~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+|+. +|+.|..+-.|+.++|.|..
T Consensus 500 ~Wn~------~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNA------AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcC------CCCEEEEEecCCCceEEEec
Confidence 9998 89999999999999999854
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=7.6e-27 Score=244.51 Aligned_cols=406 Identities=17% Similarity=0.239 Sum_probs=278.6
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCC--------eEEEEecCCCeE--EEEecCCCcceEEEEEec--CCCEEEEEeC--
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDG--------RIKLYGRHNNTQ--ALLESSEAVSTKFLQFLE--NQGILLNVTS-- 100 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg--------~I~iw~~~g~~~--~~~~~~~~~~v~~l~fs~--~~~~Lvs~s~-- 100 (1042)
.||+..|.|++.+|+.-++|+|-..| .|++||.. .+. .++ +.....|++++|++ .|.+|.....
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv-~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD~s~ 178 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSV-TLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVDDSN 178 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccc-cceeeeee-ccccccceeeeecccCCCceEEEecCCC
Confidence 48999999999999999999886666 49999966 332 222 24456899999998 3445555433
Q ss_pred CCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCC
Q 001628 101 TNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 101 dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
+..+.|||.+.+. ..........|....|+|.+.-|++....|.+.+|++..+. +....-.+ +...+.-
T Consensus 179 ~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~--l~k~~~~f--------ek~ekk~ 248 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS--LVKRQGIF--------EKREKKF 248 (626)
T ss_pred ccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--eEEEeecc--------ccccceE
Confidence 4458999999887 66667777889999999999888888888999999998876 33222122 1112358
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeC
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~ 259 (1042)
|.|++|.+ ++. +++|.++|.|.||+..+.+..+. ...|.+.|.++|.. .+|..|- |+.|..|..||
T Consensus 249 Vl~v~F~e--ngd-viTgDS~G~i~Iw~~~~~~~~k~--------~~aH~ggv~~L~~l-r~GtllS-GgKDRki~~Wd- 314 (626)
T KOG2106|consen 249 VLCVTFLE--NGD-VITGDSGGNILIWSKGTNRISKQ--------VHAHDGGVFSLCML-RDGTLLS-GGKDRKIILWD- 314 (626)
T ss_pred EEEEEEcC--CCC-EEeecCCceEEEEeCCCceEEeE--------eeecCCceEEEEEe-cCccEee-cCccceEEecc-
Confidence 99999998 665 99999999999999988765543 24899999999998 7887655 99999999999
Q ss_pred CCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeC
Q 001628 260 PSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALP 339 (1042)
Q Consensus 260 ~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 339 (1042)
..-+..+..+-..+.-++ ..+.- ++..
T Consensus 315 ~~y~k~r~~elPe~~G~i--------------Rtv~e----~~~d----------------------------------- 341 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPI--------------RTVAE----GKGD----------------------------------- 341 (626)
T ss_pred ccccccccccCchhcCCe--------------eEEec----CCCc-----------------------------------
Confidence 322222222211111111 11100 0111
Q ss_pred CCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeec
Q 001628 340 LSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG 419 (1042)
Q Consensus 340 ~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~ 419 (1042)
+++.+....|..=..... .....-+|......+
T Consensus 342 ------------------------i~vGTtrN~iL~Gt~~~~------------------f~~~v~gh~delwgl----- 374 (626)
T KOG2106|consen 342 ------------------------ILVGTTRNFILQGTLENG------------------FTLTVQGHGDELWGL----- 374 (626)
T ss_pred ------------------------EEEeeccceEEEeeecCC------------------ceEEEEecccceeeE-----
Confidence 233333322222110000 000001122111111
Q ss_pred CccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC
Q 001628 420 NSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 499 (1042)
Q Consensus 420 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~ 499 (1042)
+.+|..+.++|+++|+.+++|+-....... .-.
T Consensus 375 ----------------------------------a~hps~~q~~T~gqdk~v~lW~~~k~~wt~-------------~~~ 407 (626)
T KOG2106|consen 375 ----------------------------------ATHPSKNQLLTCGQDKHVRLWNDHKLEWTK-------------IIE 407 (626)
T ss_pred ----------------------------------EcCCChhheeeccCcceEEEccCCceeEEE-------------Eec
Confidence 266778899999999999999932222211 123
Q ss_pred CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEE
Q 001628 500 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 579 (1042)
Q Consensus 500 ~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~ 579 (1042)
.++.|++|+|.+ .+|.|+..|...|.+..+..... +...+.++++++|+|+|.+||+
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~----------------------~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT----------------------IHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEE----------------------EEecCCceEEEEEcCCCCEEEE
Confidence 688999999999 99999999999999987643321 1223589999999999999999
Q ss_pred EecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 580 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 580 gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
|+.|+.|+||-+......|..--. .+.++|+.|.||+ |+++|.+-+.|-.|..|...
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k-~~gs~ithLDwS~------Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGK-CSGSPITHLDWSS------DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeee-ecCceeEEeeecC------CCceEEeccCceEEEEEccc
Confidence 999999999988643333221111 1236999999999 99999999999999999644
No 27
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-27 Score=262.90 Aligned_cols=455 Identities=18% Similarity=0.269 Sum_probs=301.1
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEE-EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQA-LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR- 113 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~-~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~- 113 (1042)
-+|..|+|+|-+.+.-+.|.| ..|.+|-.. +.+. ++..+. +.|..+. +-|.+|+++..++.+.||+...++
T Consensus 74 ~lp~~I~alas~~~~vy~A~g---~~i~~~~rg-k~i~~~~~~~~-a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASG---NKIYAYARG-KHIRHTTLLHG-AKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCceEEEEecCceEEEecC---cEEEEEEcc-ceEEEEecccc-ceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 478899999987665555444 459999876 5544 444444 7776554 445579999999999999988842
Q ss_pred e----eeeeecC-CCeEEEEEeCCC--CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 114 L----SHVHVCK-EEITSFTIMQHS--NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 114 ~----~~~~~h~-~~It~v~~sp~~--~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
. ..+..-. +.|+++ ++|.. +.++.|+..|.+.+|++.+++. .|.++ .....|+++.-+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----v~~f~---------~~~s~IT~ieqs 211 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-----VYTFQ---------EFFSRITAIEQS 211 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-----EEEec---------ccccceeEeccC
Confidence 1 1222222 338876 45655 8899999999999999999873 23331 124699999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCC-EEEEEecCCeEEEEeCCCcccc
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGS-KVAVGYSNGEILIWGVPSILNL 265 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~-~l~sg~~dG~I~iWd~~~~~~~ 265 (1042)
| --..+++|..+|.|.+++++.++.+..+ ....++|++++|. .||+ .+++|+..|.+.+||++..+..
T Consensus 212 P--aLDVVaiG~~~G~ViifNlK~dkil~sF--------k~d~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 212 P--ALDVVAIGLENGTVIIFNLKFDKILMSF--------KQDWGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred C--cceEEEEeccCceEEEEEcccCcEEEEE--------EccccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeee
Confidence 9 8899999999999999999998888775 4456999999998 7776 5666777799999999974322
Q ss_pred ccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCee
Q 001628 266 KTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCI 345 (1042)
Q Consensus 266 ~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 345 (1042)
......|... +.....+ +... +++..
T Consensus 281 ~v~~nah~~s---------------v~~~~fl---~~ep-Vl~ta----------------------------------- 306 (910)
T KOG1539|consen 281 NVTRNAHYGS---------------VTGATFL---PGEP-VLVTA----------------------------------- 306 (910)
T ss_pred eeeeccccCC---------------cccceec---CCCc-eEeec-----------------------------------
Confidence 2222222110 0111111 0011 11111
Q ss_pred eEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEe-ecCcccc
Q 001628 346 DMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLI-TGNSFIL 424 (1042)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~-~~~~~~~ 424 (1042)
..|..+++|= ++++...++. ...-.+|..+..|+.|. .++..++
T Consensus 307 ----------------------~~DnSlk~~v--------fD~~dg~pR~-----LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 307 ----------------------GADNSLKVWV--------FDSGDGVPRL-----LRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred ----------------------cCCCceeEEE--------eeCCCCcchh-----eeeccCCCCCchheeeeccCcEEEE
Confidence 1111111111 0000000000 00011344444444443 3333333
Q ss_pred ccchhHHHhhhh-----------------------------------------------------------------cC-
Q 001628 425 SSADEDYSLLAK-----------------------------------------------------------------SV- 438 (1042)
Q Consensus 425 s~~~~~~~~~~~-----------------------------------------------------------------~~- 438 (1042)
+++.+...+.++ .+
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 333332221111 00
Q ss_pred ----CCCCCCCcCCCCCC--cc--CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCC
Q 001628 439 ----PPLLDFETKLKDGS--QS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT 510 (1042)
Q Consensus 439 ----~~~~~~~~~~~~~~--~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~ 510 (1042)
.+.+......+... .+ .++.|++.+.|+..|+|-+|+++++..+.-|. .-..|..+|+.++.+.-
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-------~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-------DSPAHKGEVTGLAVDGT 504 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-------cCccccCceeEEEecCC
Confidence 00011000000111 11 77889999999999999999999987664441 11588999999999999
Q ss_pred CCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 511 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 511 ~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
++.+++++.+|.+.+|++....... ++. ....++++..+.....+|++.+|-.|+|+|
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~--~l~--------------------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKK--SLR--------------------LGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred CceEEEccCcceEEEEecCCcceee--eec--------------------cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 9999999999999999998765432 111 125688888888899999999999999999
Q ss_pred ccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeee
Q 001628 591 TEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 652 (1042)
Q Consensus 591 ~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~ 652 (1042)
+.+.++. |.+| ...|++++||| ||++|++++.|++|++||+.||.+|...-
T Consensus 563 ~~t~kvvR~f~gh-----~nritd~~FS~------DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 563 VVTRKVVREFWGH-----GNRITDMTFSP------DGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred chhhhhhHHhhcc-----ccceeeeEeCC------CCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 9988876 5444 55999999999 99999999999999999999999997763
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.6e-28 Score=260.27 Aligned_cols=283 Identities=17% Similarity=0.277 Sum_probs=238.9
Q ss_pred CCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccce
Q 001628 79 EAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQI 157 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~ 157 (1042)
+...|+++.|+|...+++++-.+|.|.|||.++.. +..+...+-+|.+..|.+..+|+++|++|+.|+||++.+.+ .
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--k 89 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--K 89 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--e
Confidence 44789999999999999999999999999999998 67777788899999999999999999999999999999875 1
Q ss_pred eeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEE
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACW 237 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~ 237 (1042)
... ...|..-|.+++.|| ...++++++.|-+|++||++.+-. ..+++.+|..-|.+++|
T Consensus 90 V~~------------FeAH~DyIR~iavHP--t~P~vLtsSDDm~iKlW~we~~wa-------~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 90 VKT------------FEAHSDYIRSIAVHP--TLPYVLTSSDDMTIKLWDWENEWA-------CEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEE------------eeccccceeeeeecC--CCCeEEecCCccEEEEeeccCcee-------eeeEEcCcceEEEEEEe
Confidence 111 233678999999999 788999999999999999997542 23456899999999999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCC
Q 001628 238 ACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSM 317 (1042)
Q Consensus 238 ~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~ 317 (1042)
.+.|.+.|++++-|++|++|++.+. .
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~--------------~---------------------------------------- 174 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSP--------------H---------------------------------------- 174 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCC--------------C----------------------------------------
Confidence 9778999999999999999999762 0
Q ss_pred ccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCC
Q 001628 318 NLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAP 397 (1042)
Q Consensus 318 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~ 397 (1042)
T Consensus 175 -------------------------------------------------------------------------------- 174 (794)
T KOG0276|consen 175 -------------------------------------------------------------------------------- 174 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCC
Q 001628 398 KEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVS 477 (1042)
Q Consensus 398 ~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~ 477 (1042)
+.+++.+|...|.|+.|.+.+. ..+++||+.|.+|++||.+
T Consensus 175 --~nfTl~gHekGVN~Vdyy~~gd-------------------------------------kpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 175 --PNFTLEGHEKGVNCVDYYTGGD-------------------------------------KPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred --CceeeeccccCcceEEeccCCC-------------------------------------cceEEecCCCceEEEeecc
Confidence 0123348888899999876554 2389999999999999999
Q ss_pred CCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEE
Q 001628 478 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 557 (1042)
Q Consensus 478 ~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 557 (1042)
+..+... +.+|...|..+.|+|.-.++++|++||+|+||+-.+.+... ++ .-..
T Consensus 216 tk~CV~T----------LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~--tL---------n~gl----- 269 (794)
T KOG0276|consen 216 TKSCVQT----------LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK--TL---------NYGL----- 269 (794)
T ss_pred hHHHHHH----------hhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh--hh---------hcCC-----
Confidence 8766433 38999999999999999999999999999999988776644 33 2233
Q ss_pred EeecCCCeEEEEEecCCcEEEEEecCCcEEE
Q 001628 558 VMKINGSIISLNMNRNSQHLAVGSDQGYVYL 588 (1042)
Q Consensus 558 ~~~~~~~V~~l~~spdg~~La~gs~dg~V~v 588 (1042)
++|.|++-.+.++.+|+|++.|.|.|
T Consensus 270 -----eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 270 -----ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88999999999999999999998644
No 29
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-27 Score=259.13 Aligned_cols=573 Identities=12% Similarity=0.163 Sum_probs=343.7
Q ss_pred CcCceeeee-e---cccCceEEEEEcCCCCEEEEEE--cCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEE
Q 001628 26 DVDPRLVFH-Y---GFPSGCNKFAYDPLQKILAAAT--KDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNV 98 (1042)
Q Consensus 26 ~~~~~~~~~-~---G~~~~v~~la~sp~~~~LA~gs--~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~ 98 (1042)
.|+++...+ | .+.-.++|+||+++|+++|+|. ....++||+... ++...|..| +-.|++++|+|.++|++++
T Consensus 62 lfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdH-KY~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 62 LFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDH-KYNVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred EEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhc-cccceeeeecCCCcEEEee
Confidence 466665443 2 2234799999999999999997 667899999872 233334444 4789999999999999999
Q ss_pred eCCC--CEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccc---------
Q 001628 99 TSTN--LIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLS--------- 167 (1042)
Q Consensus 99 s~dg--~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~--------- 167 (1042)
+... .|.+||+..............|++++|+.++.|+++.+ +..|++|.++.+. ...-+..+|..
T Consensus 141 GsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~--KykdpiPl~gRs~~lg~lr~ 217 (1080)
T KOG1408|consen 141 GSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQS--KYKDPIPLPGRSYFLGNLRF 217 (1080)
T ss_pred ccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccc--cccCCccccchhhhcccccc
Confidence 8755 47789887776666666778899999999999988876 4579999998765 11111111100
Q ss_pred -----cccCc---------------cc-------------cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeE
Q 001628 168 -----ASHGN---------------EV-------------SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSI 214 (1042)
Q Consensus 168 -----~~~~~---------------~~-------------~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~ 214 (1042)
.++|. .. .......||+.+ ..+|++|+.+|.|++++..+-..+
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlFnp~tL~y~ 293 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLFNPETLDYA 293 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeecCcchhhhc
Confidence 01111 00 000122334443 568999999999999998874422
Q ss_pred EEeC-----Ccccc-----------cccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccc
Q 001628 215 FSMG-----GNVLQ-----------SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPIC 278 (1042)
Q Consensus 215 ~~~~-----g~~~~-----------~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~ 278 (1042)
..+. |.... ...+.-....++.|. +..+.|.+.+.|..|+|||+++..+.-
T Consensus 294 ~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd-et~~klscVYndhSlYvWDvrD~~kvg------------ 360 (1080)
T KOG1408|consen 294 GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD-ETTDKLSCVYNDHSLYVWDVRDVNKVG------------ 360 (1080)
T ss_pred cccccccccccchhhcccccccccccCcccCCceeEEEec-CCCceEEEEEcCceEEEEecccccccc------------
Confidence 2210 10000 001112334467787 899999999999999999999731000
Q ss_pred cccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCC
Q 001628 279 KLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNK 358 (1042)
Q Consensus 279 ~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 358 (1042)
..+++-+ +...| |.|-.+. .....+ ....
T Consensus 361 -----------k~~s~ly-----HS~ci-------------W~Ve~~p-----------~nv~~~-----------~~ac 389 (1080)
T KOG1408|consen 361 -----------KCSSMLY-----HSACI-------------WDVENLP-----------CNVHSP-----------TAAC 389 (1080)
T ss_pred -----------ceeeeee-----cccee-------------eeecccc-----------ccccCc-----------cccc
Confidence 0000000 01111 1110000 000000 0000
Q ss_pred CCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcC
Q 001628 359 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV 438 (1042)
Q Consensus 359 ~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~ 438 (1042)
-.+..++.+.+||+|++|++....- .+ ......-.....+.++.+ +.. .. +....
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctn----n~-vyrRNils~~l~ki~y~d----------~~~--------q~--~~d~~ 444 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTN----NQ-VYRRNILSANLSKIPYED----------STQ--------QI--MHDAS 444 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccc----cc-eeecccchhhhhcCcccc----------Cch--------hh--hhhcc
Confidence 1223467888999999999543100 00 000000000000111111 000 00 00000
Q ss_pred CCCC----CCCcCCCCCCcc--CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCC--
Q 001628 439 PPLL----DFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-- 510 (1042)
Q Consensus 439 ~~~~----~~~~~~~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~-- 510 (1042)
.... ........|+.+ .+|++..|++|..-|++|+|++..-... ..+ ..|...|.|+.|+..
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~--------eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--CFM--------EAHESEILCLEYSFPVL 514 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh--hhe--------ecccceeEEEeecCchh
Confidence 0000 011122334433 8999999999999999999999864332 222 789999999999863
Q ss_pred -CCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC--cEEEEEecCCcEE
Q 001628 511 -SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVY 587 (1042)
Q Consensus 511 -~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg--~~La~gs~dg~V~ 587 (1042)
..+||+++.|..|.|||...+-... -.+..|...||++.|..+| ..+++++.|..|.
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~--------------------qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLV--------------------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchh--------------------hhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 4899999999999999987543211 1123445999999999887 6789999999865
Q ss_pred EEecc--CCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecCCCCCCCceEEE
Q 001628 588 LLDTE--GPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQ 665 (1042)
Q Consensus 588 vwD~~--~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~ 665 (1042)
+--.+ +.-.+|..+........+..++..| ...++++++.|..|+|||+++|+....+.-.....+..+.+.
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp------~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP------TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCC------CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence 54333 1223343333322355788999998 999999999999999999999999988854444445444443
Q ss_pred EecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEE-EecCceEEEecCccccccceeEEEeeecCcCeeeEEEEEec
Q 001628 666 ILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLL-CSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSG 744 (1042)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~-~~~~~i~i~~~~~~~qg~~k~~~~~~~~~~~~~~~~~~~~~ 744 (1042)
.- +++-|+++ |+++.+.+|+..+. ...-...-+.. ....+-..+
T Consensus 649 lD----------------------------PSgiY~atScsdktl~~~Df~sg-----EcvA~m~GHsE--~VTG~kF~n 693 (1080)
T KOG1408|consen 649 LD----------------------------PSGIYLATSCSDKTLCFVDFVSG-----ECVAQMTGHSE--AVTGVKFLN 693 (1080)
T ss_pred EC----------------------------CCccEEEEeecCCceEEEEeccc-----hhhhhhcCcch--heeeeeecc
Confidence 32 23345544 67788999988651 11000000000 001111113
Q ss_pred CceEEEEEEecCeEEEEcCCCc
Q 001628 745 SDVGLMLLFTSGKFEIRSLPEL 766 (1042)
Q Consensus 745 ~~~~lv~~~~~g~I~i~slp~l 766 (1042)
+-..||.+..||.|.||.+|.-
T Consensus 694 DCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cchhheeecCCceEEEEECchh
Confidence 3445999999999999999963
No 30
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6.2e-28 Score=267.28 Aligned_cols=470 Identities=12% Similarity=0.156 Sum_probs=326.9
Q ss_pred eEEEEEcCC--CCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee
Q 001628 41 CNKFAYDPL--QKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV 117 (1042)
Q Consensus 41 v~~la~sp~--~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~ 117 (1042)
|+++ +||. -+-|++|+.+|.++||+.. +++..++++.. ..|+++.=+|--..++.|..+|+|.++|+...++...
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 6665 3554 3678999999999999987 46777777776 8899999999888899999999999999999996666
Q ss_pred eecC-CCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 118 HVCK-EEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 118 ~~h~-~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
..|+ ++|+.++|..|| ..|++|+..|.+.+||++.... .... ...|.+.|....|.| ....++
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--~~v~-----------~nah~~sv~~~~fl~--~epVl~ 304 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--INVT-----------RNAHYGSVTGATFLP--GEPVLV 304 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--eeee-----------eccccCCcccceecC--CCceEe
Confidence 6675 999999999999 5678888899999999999762 2222 123568899999999 788899
Q ss_pred EEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcccc
Q 001628 196 IIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQIT 275 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~ 275 (1042)
+++.|+.+++|=.+++... ...++...+|..+..++.|....|..+.+++.|++++.+++.........-..+...
T Consensus 305 ta~~DnSlk~~vfD~~dg~----pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGV----PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred eccCCCceeEEEeeCCCCc----chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 9999999999977765422 123556689999999999987789999999999999998876532111111111111
Q ss_pred ccccccCC-CC-CCCccceEEEEEE--eCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCC------CCee
Q 001628 276 PICKLNLG-YK-LDKIPISSLKWVY--ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLS------EPCI 345 (1042)
Q Consensus 276 p~~~l~~~-~~-~~~~pi~~l~~~~--~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~ 345 (1042)
...+.... .. -...||..+.... ....+..+.+.-+. . ....++..... .-...++.. ..+.
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~-~------~~~tW~~~n~~-~G~~~L~~~~~~~~~~~~~ 452 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK-R------SAYTWNFRNKT-SGRHVLDPKRFKKDDINAT 452 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc-c------eEEEEeccCcc-cccEEecCccccccCcceE
Confidence 11112111 00 0113444443221 11111111111111 1 01111111110 001111111 1111
Q ss_pred eEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccc
Q 001628 346 DMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS 425 (1042)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s 425 (1042)
..... ...+..+++.+.|.|-+|+ +++|.... ....-|.|..+|+.++.
T Consensus 453 av~vs--------~CGNF~~IG~S~G~Id~fN--------mQSGi~r~------sf~~~~ah~~~V~gla~--------- 501 (910)
T KOG1539|consen 453 AVCVS--------FCGNFVFIGYSKGTIDRFN--------MQSGIHRK------SFGDSPAHKGEVTGLAV--------- 501 (910)
T ss_pred EEEEe--------ccCceEEEeccCCeEEEEE--------cccCeeec------ccccCccccCceeEEEe---------
Confidence 11111 2234567888889999988 55442111 11134678888888873
Q ss_pred cchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEE
Q 001628 426 SADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 505 (1042)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l 505 (1042)
...++.+++++.+|.+++||.....+..-.++ +.+++++
T Consensus 502 ------------------------------D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-----------~~~~~~i 540 (910)
T KOG1539|consen 502 ------------------------------DGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-----------GSSITGI 540 (910)
T ss_pred ------------------------------cCCCceEEEccCcceEEEEecCCcceeeeecc-----------CCCccee
Confidence 33445899999999999999998764433322 3688999
Q ss_pred EEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCc
Q 001628 506 YYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 585 (1042)
Q Consensus 506 ~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~ 585 (1042)
.++....++|++..|-.|+++|..+..... .| .+|. +.|++++|||||++|++++.|++
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--~f---------~gh~----------nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVR--EF---------WGHG----------NRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhhhhH--Hh---------hccc----------cceeeeEeCCCCcEEEEeecCCc
Confidence 999999999999999999999998766544 44 4555 99999999999999999999999
Q ss_pred EEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCC-ceEEEEEC
Q 001628 586 VYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVLDS 642 (1042)
Q Consensus 586 V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~D-g~V~vwd~ 642 (1042)
|++||+-++.++-.... .++.+++.|+| +|++|+|+..| .-|++|--
T Consensus 600 Ir~wDlpt~~lID~~~v----d~~~~sls~SP------ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLV----DSPCTSLSFSP------NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEeccCcceeeeEec----CCcceeeEECC------CCCEEEEEEecCceEEEEEc
Confidence 99999999988733332 33899999999 99999999999 67999973
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=262.81 Aligned_cols=198 Identities=14% Similarity=0.271 Sum_probs=171.1
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceee
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSH 116 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~ 116 (1042)
...|..+.|.|+|+.|.+|+..|.+.+|+..+ +.+.+++. +..+|++|.|++++.++++|+.+|.|++|+..-..+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 45688999999999999999999999999862 22223334 45899999999999999999999999999998887777
Q ss_pred eeecC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 117 VHVCK-EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 117 ~~~h~-~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
+..|. ..|++++|+|....++++++||+|+|||........ . ..+|.-.|.++.||| ....|+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~--v------------L~GHgwdVksvdWHP--~kgLia 238 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER--V------------LRGHGWDVKSVDWHP--TKGLIA 238 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh--e------------eccCCCCcceeccCC--ccceeE
Confidence 77766 899999999999999999999999999987654111 0 234567999999999 788899
Q ss_pred EEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 196 IIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+++.|+.|++||.+++.++.. +.+|...|..+.|. +++++|++++.|..++++|++.
T Consensus 239 sgskDnlVKlWDprSg~cl~t--------lh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLAT--------LHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred EccCCceeEeecCCCcchhhh--------hhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhH
Confidence 999999999999999776654 58899999999998 9999999999999999999985
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.3e-28 Score=234.09 Aligned_cols=208 Identities=13% Similarity=0.247 Sum_probs=173.5
Q ss_pred eecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecCC----CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEE
Q 001628 34 HYGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRHN----NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWD 108 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~g----~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd 108 (1042)
.-||++.+..+||+|- |.+||+++.|..|++|+..+ ....++...++..|+.++|+|.|++|++++-|.++.||.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 4588999999999999 89999999999999999883 122234444568899999999999999999999999998
Q ss_pred cCCCc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 109 IDKKR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 109 ~~~~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
-..+. +..+.+|+..|.|++|+++|+|||+++.|..|.||.++.... +... +....|...|-.+.|
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~----------aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECI----------AVLQEHTQDVKHVIW 158 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEE----------eeeccccccccEEEE
Confidence 77665 678889999999999999999999999999999999985441 1111 013456789999999
Q ss_pred ccCCCCCeEEEEECCCeEEEEecc-CCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIR-ESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~-~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
|| ....|++++.|++|++|+-. .+.-. ..+++.+|...|.++.|. +.|..+++++.|++++||....
T Consensus 159 HP--t~dlL~S~SYDnTIk~~~~~~dddW~------c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 159 HP--TEDLLFSCSYDNTIKVYRDEDDDDWE------CVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cC--CcceeEEeccCCeEEEEeecCCCCee------EEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeecc
Confidence 99 78899999999999999877 33211 134457888899999998 9999999999999999998653
No 33
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-26 Score=247.88 Aligned_cols=483 Identities=14% Similarity=0.188 Sum_probs=310.8
Q ss_pred CcCceeeeeec-ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC--CeEEEEecCCCcceEEEEEecCCCEEEEEeCCC
Q 001628 26 DVDPRLVFHYG-FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN--NTQALLESSEAVSTKFLQFLENQGILLNVTSTN 102 (1042)
Q Consensus 26 ~~~~~~~~~~G-~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g--~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg 102 (1042)
.++.....-+. -|+.|+|+||+...+.||++-.+|.|-||+... -.+.++.++....|.+|+|++++ +|.+.+.+|
T Consensus 12 ~m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg 90 (691)
T KOG2048|consen 12 KMQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSG 90 (691)
T ss_pred eeEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCc
Confidence 34454444443 489999999999999999999999999999873 35667778888999999999665 899999999
Q ss_pred CEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEE
Q 001628 103 LIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVI 181 (1042)
Q Consensus 103 ~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~ 181 (1042)
.|.-||+.+.+ ........+.|++++.+|....+++|++||.++.++...+.+ .|... ....++.|.
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-----~~~r~-------l~rq~sRvL 158 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-----TYKRS-------LMRQKSRVL 158 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE-----EEEee-------cccccceEE
Confidence 99999999988 566667788999999999999999999999777777776652 11110 111247999
Q ss_pred EEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 182 ~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++.|+| ++.++++|+.||.|++||+.++..+.......-........-|+++.|. ....|++|...|+|.+||...
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIF 234 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccC
Confidence 999999 8999999999999999999998877743222222223355668888887 466789999999999999987
Q ss_pred ccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCC
Q 001628 262 ILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLS 341 (1042)
Q Consensus 262 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 341 (1042)
+........ +. .-+..+. .......+++.
T Consensus 235 gTLiqS~~~-h~---------------adVl~La---v~~~~d~vfsa-------------------------------- 263 (691)
T KOG2048|consen 235 GTLIQSHSC-HD---------------ADVLALA---VADNEDRVFSA-------------------------------- 263 (691)
T ss_pred cchhhhhhh-hh---------------cceeEEE---EcCCCCeEEEc--------------------------------
Confidence 632111100 00 0111111 11222333333
Q ss_pred CCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCc
Q 001628 342 EPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNS 421 (1042)
Q Consensus 342 ~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~ 421 (1042)
.-++.+..|.....-. .|. ..-....|...|.++++..+
T Consensus 264 --------------------------Gvd~~ii~~~~~~~~~--------~wv-----~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 264 --------------------------GVDPKIIQYSLTTNKS--------EWV-----INSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred --------------------------cCCCceEEEEecCCcc--------cee-----eeccccCCcccceeeeeecc--
Confidence 3333333333111100 000 00111256666777777666
Q ss_pred cccccchhHHHhhhhcCCCCCCCCc----CCCCCCccCCCCccEEEEEeCCCcEEEEeCCCC------ceeeeeeccccc
Q 001628 422 FILSSADEDYSLLAKSVPPLLDFET----KLKDGSQSHSKVKNLFITGHSDGAINFWDVSCP------LFLLILSLKQQS 491 (1042)
Q Consensus 422 ~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~------~~~~l~~l~~~~ 491 (1042)
.+.+++.+..+.....+......+. .+........+...++ .--.+..+.+|.+.+. ....++++.
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~-~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~--- 378 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLL-VLWKAHGVDLWRLGSVILQGEYNYIHLLKLF--- 378 (691)
T ss_pred eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEE-EEeccccccceeccCcccccccChhhheeee---
Confidence 5555665554433332221111000 0001111122222222 2333445667776655 222333332
Q ss_pred cccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEe
Q 001628 492 EKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 571 (1042)
Q Consensus 492 ~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~s 571 (1042)
......|++-+.||++.++|.++-. .++||++.........+. .+. .. ..-.++.+.|+
T Consensus 379 ----~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~---~~----------~~~~a~~i~ft 437 (691)
T KOG2048|consen 379 ----TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDV---PL----------ALLDASAISFT 437 (691)
T ss_pred ----cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccc---hh----------hhccceeeEEE
Confidence 2233679999999999999987644 689999986543221111 000 11 12467888899
Q ss_pred cCCcEEEEEe-cCCcEEEEeccCCeEEEeccccc-ccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCcee
Q 001628 572 RNSQHLAVGS-DQGYVYLLDTEGPTVLYQKHIAS-DISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 648 (1042)
Q Consensus 572 pdg~~La~gs-~dg~V~vwD~~~~~~~~~~~~~~-~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i 648 (1042)
-|+..+...+ .+..+.+++..++.......... ....+|..|..+| +|+||++.+.+|.|.+|++++++.-
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss------dG~yiaa~~t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS------DGNYIAAISTRGQIFVYNLETLESH 510 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC------CCCEEEEEeccceEEEEEcccceee
Confidence 8888877777 77888888888766531111111 1234899999999 9999999999999999999976543
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1e-28 Score=273.99 Aligned_cols=261 Identities=22% Similarity=0.295 Sum_probs=211.6
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecc--------------cccccC---ccccCCC
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIP--------------LSASHG---NEVSGDP 178 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip--------------~~~~~~---~~~~~~~ 178 (1042)
++.-....++|..|++++..||.|..|..|++|.+....++.....-.+. .....+ ...+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 33444567999999999999999999999999999854311100000000 000001 1467899
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEe
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
+|.++.|+| +.++|+++++|+++++|.+.+..++-.+ .+|..+|+.+.|+ |.|-+|||++.|++-++|.
T Consensus 453 PVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y--------~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 453 PVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIY--------KGHLAPVWDVQFA-PRGYYFATASHDQTARLWS 521 (707)
T ss_pred ceeeeeecc--cccceeeccCCcceeeeecccceeEEEe--------cCCCcceeeEEec-CCceEEEecCCCceeeeee
Confidence 999999999 9999999999999999999998876664 7899999999998 9999999999999999999
Q ss_pred CCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEee
Q 001628 259 VPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLAL 338 (1042)
Q Consensus 259 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 338 (1042)
.... .|.
T Consensus 522 ~d~~------------~Pl------------------------------------------------------------- 528 (707)
T KOG0263|consen 522 TDHN------------KPL------------------------------------------------------------- 528 (707)
T ss_pred cccC------------Cch-------------------------------------------------------------
Confidence 8752 010
Q ss_pred CCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEee
Q 001628 339 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 418 (1042)
Q Consensus 339 ~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~ 418 (1042)
++ .-+|.+.|.|+.
T Consensus 529 -----------------------------------Ri----------------------------faghlsDV~cv~--- 542 (707)
T KOG0263|consen 529 -----------------------------------RI----------------------------FAGHLSDVDCVS--- 542 (707)
T ss_pred -----------------------------------hh----------------------------hcccccccceEE---
Confidence 01 126777788888
Q ss_pred cCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCC
Q 001628 419 GNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 498 (1042)
Q Consensus 419 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~ 498 (1042)
|+|+.++++||+.|.+||+||+..+....++ .+|
T Consensus 543 ------------------------------------FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----------~GH 576 (707)
T KOG0263|consen 543 ------------------------------------FHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----------TGH 576 (707)
T ss_pred ------------------------------------ECCcccccccCCCCceEEEEEcCCCcEEEEe----------cCC
Confidence 5566669999999999999999999887777 899
Q ss_pred CCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEE
Q 001628 499 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLA 578 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La 578 (1042)
..+|++|+|||+|++||+|+.||.|.+||+....... .+ .+|. +.|.+|.||.||..||
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--~l---------~~Ht----------~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--QL---------KGHT----------GTIYSLSFSRDGNVLA 635 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--hh---------hccc----------CceeEEEEecCCCEEE
Confidence 9999999999999999999999999999998765533 33 3454 9999999999999999
Q ss_pred EEecCCcEEEEeccC
Q 001628 579 VGSDQGYVYLLDTEG 593 (1042)
Q Consensus 579 ~gs~dg~V~vwD~~~ 593 (1042)
+|+.|.+|++||+..
T Consensus 636 sgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 636 SGGADNSVRLWDLTK 650 (707)
T ss_pred ecCCCCeEEEEEchh
Confidence 999999999999864
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-27 Score=262.66 Aligned_cols=312 Identities=14% Similarity=0.221 Sum_probs=236.0
Q ss_pred CcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001628 80 AVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIV 158 (1042)
Q Consensus 80 ~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~ 158 (1042)
...|+.++|+|...+++++-..|.|++||.+-+. +..+..|.++|..++|+|...++++|++|..|+||++.+..+ +
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-l- 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-L- 86 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-h-
Confidence 3678999999999999999999999999999888 778899999999999999999999999999999999998764 1
Q ss_pred eeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE
Q 001628 159 KMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA 238 (1042)
Q Consensus 159 ~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~ 238 (1042)
++ ..+|..-|..+.||+ .-.++++++.|.+|+||++.+++++.. +.+|...|.|..|+
T Consensus 87 ---ft---------L~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--------ltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 87 ---FT---------LLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--------LTGHNHYVMCAQFH 144 (1202)
T ss_pred ---hh---------hccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--------EecCceEEEeeccC
Confidence 22 245678999999999 899999999999999999999887776 48999999999998
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCc
Q 001628 239 CPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMN 318 (1042)
Q Consensus 239 ~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~ 318 (1042)
|....+++++-|.+|++||+..-++......+.. ..+... ..+..+|
T Consensus 145 -ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e-~~~~~~--------------------~~~~dLf----------- 191 (1202)
T KOG0292|consen 145 -PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE-DQMRGQ--------------------QGNSDLF----------- 191 (1202)
T ss_pred -CccceEEEecccceEEEEeecchhccCCCCCCch-hhhhcc--------------------ccchhhc-----------
Confidence 9999999999999999999987321111000000 000000 0000000
Q ss_pred cEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCc
Q 001628 319 LLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPK 398 (1042)
Q Consensus 319 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~ 398 (1042)
+..++
T Consensus 192 ----------------------------------------g~~Da----------------------------------- 196 (1202)
T KOG0292|consen 192 ----------------------------------------GQTDA----------------------------------- 196 (1202)
T ss_pred ----------------------------------------CCcCe-----------------------------------
Confidence 00000
Q ss_pred cceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCC
Q 001628 399 EVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC 478 (1042)
Q Consensus 399 ~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~ 478 (1042)
..-+.+.+|+..|.-++|. |.-.++++|+.|..|++|.++.
T Consensus 197 VVK~VLEGHDRGVNwaAfh---------------------------------------pTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFH---------------------------------------PTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eeeeeecccccccceEEec---------------------------------------CCcceEEecCCcceeeEEEecc
Confidence 0112344777777777744 4444999999999999999875
Q ss_pred CceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEE
Q 001628 479 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 558 (1042)
Q Consensus 479 ~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 558 (1042)
...=. .+...+|-..|+++-|+|...++++.++|++++|||+....... +|
T Consensus 238 tKaWE--------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~--tf------------------- 288 (1202)
T KOG0292|consen 238 TKAWE--------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ--TF------------------- 288 (1202)
T ss_pred cccee--------ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee--ee-------------------
Confidence 42211 12337999999999999999999999999999999998754432 33
Q ss_pred eecCCCeEEEEEecCCcEEEEEecCCcEEEEecc
Q 001628 559 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 559 ~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~ 592 (1042)
.-.++.-..++-+|..+++|.|-+.|. .||-++
T Consensus 289 rrendRFW~laahP~lNLfAAgHDsGm-~VFkle 321 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFAAGHDSGM-IVFKLE 321 (1202)
T ss_pred eccCCeEEEEEecCCcceeeeecCCce-EEEEEc
Confidence 112377888999998888888776665 455443
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=231.78 Aligned_cols=298 Identities=14% Similarity=0.188 Sum_probs=229.0
Q ss_pred eeeeeecCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 LSHVHVCKEEITSFTIMQH-SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~-~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
...+.+|.++|+.++|+|. |..||+++.|..|++|+...... .. ....+ ...|+..|.+++|+| .++
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~-ck~vl--------d~~hkrsVRsvAwsp--~g~ 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WT-CKTVL--------DDGHKRSVRSVAWSP--HGR 74 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EE-EEEec--------cccchheeeeeeecC--CCc
Confidence 5677889999999999999 89999999999999999885220 11 11111 234678999999999 899
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
+|++|+-|.++.||.-..+.... ...+.+|...|.|++|+ ++|.+||+++.|.++.||.+..+.
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efec------v~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~dedd--------- 138 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFEC------VATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDD--------- 138 (312)
T ss_pred EEEEeeccceEEEeecCCCceeE------EeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCC---------
Confidence 99999999999999887665332 44568999999999998 999999999999999999988530
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
.+ -++.+++
T Consensus 139 ---Ef------------------------------------------ec~aVL~-------------------------- 147 (312)
T KOG0645|consen 139 ---EF------------------------------------------ECIAVLQ-------------------------- 147 (312)
T ss_pred ---cE------------------------------------------EEEeeec--------------------------
Confidence 00 0001111
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
.|...|..+.
T Consensus 148 -----------------------------------------------------~HtqDVK~V~----------------- 157 (312)
T KOG0645|consen 148 -----------------------------------------------------EHTQDVKHVI----------------- 157 (312)
T ss_pred -----------------------------------------------------cccccccEEE-----------------
Confidence 2332333333
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCC-CCceeeeeeccccccccCCCCCCCeEEEEEeCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 511 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~-~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~ 511 (1042)
++|...+|++++.|.+|++|+-. ......+.+| .+|...|.+++|++.|
T Consensus 158 ----------------------WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl--------~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 158 ----------------------WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL--------DGHENTVWSLAFDNIG 207 (312)
T ss_pred ----------------------EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe--------cCccceEEEEEecCCC
Confidence 55667799999999999999877 5544444444 7888899999999999
Q ss_pred CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 512 RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 512 ~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
..|++++.|++|+||.....-. ..| +.++..+.|. ...||+|+.|+.|+|+..
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~---------------~~~----------sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLS---------------GMH----------SRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEecCCcceEeeeeccCcc---------------hhc----------ccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999999999753211 233 3889999999 678999999999999976
Q ss_pred cC----CeEEEecccccccCCCeEEEEEEeeecCCCC-ceEEEEEeCCceEEEEECC
Q 001628 592 EG----PTVLYQKHIASDISSGIVSLQFETCSLQGFE-KNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 592 ~~----~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~-~~~L~s~s~Dg~V~vwd~~ 643 (1042)
.. +..-+..+....|...|.+++|.| . .++|++++.||.|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p------~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNP------KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcC------CCCCceeecCCCceEEEEEec
Confidence 53 322222333334777999999998 4 7899999999999999854
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.4e-28 Score=272.98 Aligned_cols=201 Identities=16% Similarity=0.223 Sum_probs=177.4
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecC--------------------------------CCeEEEEecCCCcce
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH--------------------------------NNTQALLESSEAVST 83 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~--------------------------------g~~~~~~~~~~~~~v 83 (1042)
--...++|..|+++.++||.|..|..|++|... +.....+.+|. .||
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-GPV 454 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC-Cce
Confidence 334679999999999999999999999999764 11222344555 789
Q ss_pred EEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee
Q 001628 84 KFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY 162 (1042)
Q Consensus 84 ~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~ 162 (1042)
....|+|+.++|+++++|++|++|.+++.. +....+|..+|+++.|+|.|-|+|+|+.|++.++|..+... |.
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------Pl 528 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------PL 528 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------ch
Confidence 999999999999999999999999999988 66777999999999999999999999999999999988754 22
Q ss_pred ecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCC
Q 001628 163 IIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIG 242 (1042)
Q Consensus 163 ~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g 242 (1042)
++ ..+|-..|.|+.||| +.+++++|+.|.+|++||+.+|..++.| .+|..+|.+++|+ |+|
T Consensus 529 Ri--------faghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF--------~GH~~~V~al~~S-p~G 589 (707)
T KOG0263|consen 529 RI--------FAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIF--------TGHKGPVTALAFS-PCG 589 (707)
T ss_pred hh--------hcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEe--------cCCCCceEEEEEc-CCC
Confidence 22 456788999999999 9999999999999999999998888776 7899999999998 999
Q ss_pred CEEEEEecCCeEEEEeCCCc
Q 001628 243 SKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 243 ~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.+|++|+.||.|.+||+.++
T Consensus 590 r~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ceEeecccCCcEEEEEcCCC
Confidence 99999999999999999874
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=256.66 Aligned_cols=287 Identities=18% Similarity=0.267 Sum_probs=231.7
Q ss_pred cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcc
Q 001628 77 SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESS 155 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~ 155 (1042)
...+++|..|.|.|+|++|++|+..|.+.+|+..+-. -..++.|...|+++.|++++.++++|+.+|.|++|+..-...
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 3446789999999999999999999999999985544 345578999999999999999999999999999999876542
Q ss_pred ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEE
Q 001628 156 QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSA 235 (1042)
Q Consensus 156 ~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l 235 (1042)
+. . ...|...|.+++|+| +...+++++.||+|+|||....+... .+.+|.-.|.++
T Consensus 173 k~---~-----------~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~--------vL~GHgwdVksv 228 (464)
T KOG0284|consen 173 KI---I-----------QAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEER--------VLRGHGWDVKSV 228 (464)
T ss_pred HH---h-----------hHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhh--------eeccCCCCccee
Confidence 11 1 112457999999999 77789999999999999998755333 348899999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccC
Q 001628 236 CWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFV 315 (1042)
Q Consensus 236 ~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~ 315 (1042)
.|+ |....|++|+.|..|++||.+++..+
T Consensus 229 dWH-P~kgLiasgskDnlVKlWDprSg~cl-------------------------------------------------- 257 (464)
T KOG0284|consen 229 DWH-PTKGLIASGSKDNLVKLWDPRSGSCL-------------------------------------------------- 257 (464)
T ss_pred ccC-CccceeEEccCCceeEeecCCCcchh--------------------------------------------------
Confidence 998 99999999999999999999985100
Q ss_pred CCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCC
Q 001628 316 SMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 395 (1042)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~ 395 (1042)
T Consensus 258 -------------------------------------------------------------------------------- 257 (464)
T KOG0284|consen 258 -------------------------------------------------------------------------------- 257 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEe
Q 001628 396 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWD 475 (1042)
Q Consensus 396 l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd 475 (1042)
..+..|...|+.+.|. +++++|+|++.|..++++|
T Consensus 258 ------~tlh~HKntVl~~~f~---------------------------------------~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 258 ------ATLHGHKNTVLAVKFN---------------------------------------PNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred ------hhhhhccceEEEEEEc---------------------------------------CCCCeeEEccCCceEEEEe
Confidence 0012566677777744 4445999999999999999
Q ss_pred CCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceee
Q 001628 476 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 554 (1042)
Q Consensus 476 ~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 554 (1042)
+.. +..++.+ ++|...|+++.|+|-. .+|.+|+.||.|..|.+....... .+. ..
T Consensus 293 iR~--mkEl~~~--------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--~i~--------~A---- 348 (464)
T KOG0284|consen 293 IRT--MKELFTY--------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--EIP--------PA---- 348 (464)
T ss_pred hhH--hHHHHHh--------hcchhhheeeccccccccceeeccCCCceEEEecccccccc--CCC--------cc----
Confidence 983 3333433 7899999999999965 788899999999999998333222 110 23
Q ss_pred eEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 555 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 555 ~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
|.+.|.+|+|+|-|.+||+|+.|.++++|....
T Consensus 349 ------Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 349 ------HDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ------cccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 459999999999999999999999999997643
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=240.28 Aligned_cols=201 Identities=18% Similarity=0.343 Sum_probs=177.5
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~ 113 (1042)
.||.+-|.|++++|...++|+|+.|++|+|||+. |.+..++.+|- ..|..+++++...||++++.|+.|+.||++..+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi-~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI-ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh-heeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 4899999999999999999999999999999998 44555555555 789999999999999999999999999999988
Q ss_pred -eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 -LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 -~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
+...++|-..|.|++..|.-+.|++|+.|.+++|||+.+... + +. ..+|..+|..+.++| -..
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V---~~---------l~GH~~~V~~V~~~~--~dp 290 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--V---HV---------LSGHTNPVASVMCQP--TDP 290 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--E---EE---------ecCCCCcceeEEeec--CCC
Confidence 788899999999999999999999999999999999998751 1 11 345788999999999 455
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.+++++.|++|++||+..|+.... +..|...|.+++.+ |....|++++.| .|+-|++..+
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~t--------lt~hkksvral~lh-P~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMIT--------LTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEe--------eecccceeeEEecC-CchhhhhccCCc-cceeccCCcc
Confidence 699999999999999999775544 48899999999998 999999999998 6899998874
No 40
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.7e-25 Score=243.39 Aligned_cols=493 Identities=12% Similarity=0.140 Sum_probs=293.3
Q ss_pred eeecccCceEEEEEcCCCC---EEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEE
Q 001628 33 FHYGFPSGCNKFAYDPLQK---ILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWD 108 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~~~---~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd 108 (1042)
..-||...|+|+.|=|+.. .+++|+.||+|.+|... .........+. ..+.++++........+.+.|+++.+||
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~ 127 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVSVWD 127 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEEEee
Confidence 3459999999999999887 89999999999999876 23333333222 3334455555543333345777777777
Q ss_pred cCCC---------------------------------------------------ceeeeeecCCCeEEEEEeCCC---C
Q 001628 109 IDKK---------------------------------------------------RLSHVHVCKEEITSFTIMQHS---N 134 (1042)
Q Consensus 109 ~~~~---------------------------------------------------~~~~~~~h~~~It~v~~sp~~---~ 134 (1042)
.+.. ....+.+|.+.|.+++|...+ -
T Consensus 128 ~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~ 207 (764)
T KOG1063|consen 128 KQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDL 207 (764)
T ss_pred cCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcE
Confidence 6211 134556788899999987654 4
Q ss_pred EEEEEeCCCcEEEEEccCCcc--------------------ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 135 YMLLGDTAGKISVLKLDQESS--------------------QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 135 ~l~sg~~dG~I~vwd~~~~~~--------------------~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
+|+++++|..|++|++.-... .+....|.+..+.. ..+|+..|.++.|+| .+..|
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal---l~GHeDWV~sv~W~p--~~~~L 282 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL---LMGHEDWVYSVWWHP--EGLDL 282 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh---hcCcccceEEEEEcc--chhhh
Confidence 889999999999999754330 00011111111111 347899999999999 88899
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccc
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQI 274 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~ 274 (1042)
++++.|.++.+|...+..-+..-.. .+....+.........|+ |+++.+++-+..|..++|...+..
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~v-RlGe~gg~a~GF~g~lw~-~n~~~ii~~g~~Gg~hlWkt~d~~----------- 349 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVV-RLGEVGGSAGGFWGGLWS-PNSNVIIAHGRTGGFHLWKTKDKT----------- 349 (764)
T ss_pred eecccCcceEEEecCCccceEEEEE-EeecccccccceeeEEEc-CCCCEEEEecccCcEEEEeccCcc-----------
Confidence 9999999999999887642221000 011113445678889998 999999999999999999933310
Q ss_pred cccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCC
Q 001628 275 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSS 354 (1042)
Q Consensus 275 ~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (1042)
.-.........-..+..+.|.. .+..++.+
T Consensus 350 --~w~~~~~iSGH~~~V~dv~W~p---sGeflLsv--------------------------------------------- 379 (764)
T KOG1063|consen 350 --FWTQEPVISGHVDGVKDVDWDP---SGEFLLSV--------------------------------------------- 379 (764)
T ss_pred --ceeeccccccccccceeeeecC---CCCEEEEe---------------------------------------------
Confidence 0000000111113344555542 11222211
Q ss_pred CCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceec-cCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 355 DPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLK-MPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 355 ~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~-~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
..|-+-++|- +-|.. .. ...+. ..-|.-.++|++|.+.....++..++..++
T Consensus 380 -------------s~DQTTRlFa---------~wg~q----~~-wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 380 -------------SLDQTTRLFA---------RWGRQ----QE-WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLR 432 (764)
T ss_pred -------------ccccceeeec---------ccccc----cc-eeeecccccccccceeeehccCCceeeecccceeee
Confidence 1111122222 00000 00 11222 223667788888888666666666666666
Q ss_pred hhhcCCCCCCCCcCCCC------------C-Ccc--CCCCccEEEEEeCCCcE---EEEeCCCCcee---------eee-
Q 001628 434 LAKSVPPLLDFETKLKD------------G-SQS--HSKVKNLFITGHSDGAI---NFWDVSCPLFL---------LIL- 485 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~------------~-~~~--~~~~~~~l~tg~~Dg~I---riWd~~~~~~~---------~l~- 485 (1042)
.+.....+...-....+ . +++ .+... .+---..+|.. ..=........ +|.
T Consensus 433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa-~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA-FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC-CcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 66543332211000000 0 000 01000 00000111111 11010000000 000
Q ss_pred -eccccccccCCCCCCCeEEEEEeCCCCEEEEEecc-----ceEEEEEeccCCcccccceeeecccccCccceeeeEEEe
Q 001628 486 -SLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS-----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 559 (1042)
Q Consensus 486 -~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~d-----G~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 559 (1042)
.|-++ .+.+.+|+..|.+++.+|++.++|++... ..|++|+........ .+.
T Consensus 512 ~tLwPE-v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---------------------~L~ 569 (764)
T KOG1063|consen 512 NTLWPE-VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---------------------ELE 569 (764)
T ss_pred hccchh-hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---------------------eec
Confidence 00011 12346999999999999999999999875 457888876533321 233
Q ss_pred ecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE-EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEE
Q 001628 560 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVL 638 (1042)
Q Consensus 560 ~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~ 638 (1042)
.|+-.|+.|+|||||++|++.+.|.++.+|........ +.......|.--|.+..|+| ++.+++|+|.|.+|.
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p------de~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP------DEKYFATASRDKKVK 643 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc------ccceeEEecCCceEE
Confidence 44588999999999999999999999999988543332 22222334666899999999 999999999999999
Q ss_pred EEECCCC--ceeee
Q 001628 639 VLDSDNG--NMLST 650 (1042)
Q Consensus 639 vwd~~tg--~~i~~ 650 (1042)
||....+ +.+..
T Consensus 644 VW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 644 VWEEPDLRDKYISR 657 (764)
T ss_pred EEeccCchhhhhhh
Confidence 9998766 44433
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.1e-26 Score=284.70 Aligned_cols=317 Identities=13% Similarity=0.197 Sum_probs=230.8
Q ss_pred CCeEEEEecCCCeEEE--Ee----cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCC----c----eeeeeecCCCe
Q 001628 59 DGRIKLYGRHNNTQAL--LE----SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKK----R----LSHVHVCKEEI 124 (1042)
Q Consensus 59 dg~I~iw~~~g~~~~~--~~----~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~----~----~~~~~~h~~~I 124 (1042)
+|-+++|+.. ..... +. ..+...|.+++|+|++++|++++.|+.|+|||+... . ......+...|
T Consensus 457 ~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFS-KLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhccc-ceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 5778888877 43322 22 124578999999999999999999999999997542 1 11222345689
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeE
Q 001628 125 TSFTIMQH-SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLI 203 (1042)
Q Consensus 125 t~v~~sp~-~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I 203 (1042)
.+++|++. +.+|++|+.||+|++||+.+.+. .. . ...|...|++++|+|. ++.+|++|+.||.|
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~---~---------~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VT---E---------MKEHEKRVWSIDYSSA-DPTLLASGSDDGSV 600 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EE---E---------ecCCCCCEEEEEEcCC-CCCEEEEEcCCCEE
Confidence 99999875 68999999999999999987652 11 1 1235789999999974 78899999999999
Q ss_pred EEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCC
Q 001628 204 SLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLG 283 (1042)
Q Consensus 204 ~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~ 283 (1042)
++||+.++..+..+ . +...|.++.|++++|..|++|+.||.|++||+..... ++
T Consensus 601 ~iWd~~~~~~~~~~--------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-----------~~------ 654 (793)
T PLN00181 601 KLWSINQGVSIGTI--------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-----------PL------ 654 (793)
T ss_pred EEEECCCCcEEEEE--------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-----------cc------
Confidence 99999987766543 2 2357899999757899999999999999999975200 00
Q ss_pred CCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccE
Q 001628 284 YKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDS 363 (1042)
Q Consensus 284 ~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 363 (1042)
T Consensus 655 -------------------------------------------------------------------------------- 654 (793)
T PLN00181 655 -------------------------------------------------------------------------------- 654 (793)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCC
Q 001628 364 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLD 443 (1042)
Q Consensus 364 l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 443 (1042)
.....|...|+++.|.
T Consensus 655 --------------------------------------~~~~~h~~~V~~v~f~-------------------------- 670 (793)
T PLN00181 655 --------------------------------------CTMIGHSKTVSYVRFV-------------------------- 670 (793)
T ss_pred --------------------------------------eEecCCCCCEEEEEEe--------------------------
Confidence 0011455556666643
Q ss_pred CCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCc----eeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEec
Q 001628 444 FETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPL----FLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 519 (1042)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~----~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~ 519 (1042)
++.++++++.|++|++||+.... ..++.. +.+|...+.+++|+|++.+||+|+.
T Consensus 671 --------------~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--------~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 671 --------------DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--------FMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred --------------CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--------EcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 22379999999999999987431 112222 2688889999999999999999999
Q ss_pred cceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 520 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 520 dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
||.|++|+........ .+. +. .....+......+...|.+++|+|++..|++|+.||.|+|||+
T Consensus 729 D~~v~iw~~~~~~~~~--s~~-~~-----~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 729 TNEVFVYHKAFPMPVL--SYK-FK-----TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCEEEEEECCCCCceE--EEe-cc-----cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999976432211 110 00 0000000112234467999999999999999999999999996
No 42
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.9e-26 Score=274.83 Aligned_cols=880 Identities=18% Similarity=0.125 Sum_probs=415.4
Q ss_pred ccCCCCCCCCCCCCCCcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCc--ceEEEEE
Q 001628 11 SMKKPGGSSDGLKSSDVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAV--STKFLQF 88 (1042)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~--~v~~l~f 88 (1042)
..++.+..+..++.+.|++++..+||+|+....+||||.+++||+|+.+|.|++|+.. .++....++... .+..+.|
T Consensus 8 ~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~-~ve~~~~~~~~~~~~~~~~~~ 86 (993)
T KOG1983|consen 8 RSKKKNPPRERLKNDLFAFDKTNRHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP-GVEFVGLHPKQNQINVTRIEL 86 (993)
T ss_pred ccccCCCccccccchhcccccceecCCCCCCcceeeccccceEEEEEecccEEEeccc-ceEEEeccccccchhhhheee
Confidence 3445566899999999999999999999999999999999999999999999999999 787777766544 3444445
Q ss_pred ecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeee-e----ee
Q 001628 89 LENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKM-K----YI 163 (1042)
Q Consensus 89 s~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~-~----~~ 163 (1042)
............+..+.+|..... ....+...++++...+--.+ ..| .++.+++|++.......... + +.
T Consensus 87 ~~~~s~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (993)
T KOG1983|consen 87 LVGISRNLVLSDDDSLHLWSIKIK---TGVFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNF 161 (993)
T ss_pred eecccccceeecccceeeeccccc---ceeecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceecccccccc
Confidence 554445566666677777765433 22234456777666655566 666 88888888876543100000 0 00
Q ss_pred cc-----------cc--------cccCc----cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCc
Q 001628 164 IP-----------LS--------ASHGN----EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGN 220 (1042)
Q Consensus 164 ip-----------~~--------~~~~~----~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~ 220 (1042)
.+ +. +.... ...+..++.+..+. .....+.++..+.+.+|+........
T Consensus 162 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----- 233 (993)
T KOG1983|consen 162 VPYESLSPTLSIEGLVIDLDTVLISLPDAYLGLSLIEYESLQVLYY---SPTKILIGFNRGLVVIKDRASKYVQS----- 233 (993)
T ss_pred ceeeeeccceeeeccccccccceeecccccccccccccccceeeee---cCCCcceeeeeeeeeehhcccccchh-----
Confidence 00 00 00000 01111223333332 22335556666666666655433211
Q ss_pred ccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccc--cccCCccccccccccCCCCCCCccceEEEEEE
Q 001628 221 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLK--TEECGTQITPICKLNLGYKLDKIPISSLKWVY 298 (1042)
Q Consensus 221 ~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~--~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~ 298 (1042)
.-.+....+. +++..+++++.||.+.+||...+.... .........+. + .+..+....|..
T Consensus 234 --------~~~~~~~~~~-~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~~~~~~~~~~~~-----~---p~~~~~~~~~~~ 296 (993)
T KOG1983|consen 234 --------AYLPNGQLES-RDGSHFVSYHTDGSYAFWDVSSGKLQIARNPVPLVSLVPY-----G---PCKQINRILTEL 296 (993)
T ss_pred --------hcccccccCc-cCCceEEEEEecCCEEeeecCCCceeecCccccccccCCC-----C---hhhhhccccccc
Confidence 1111112224 789999999999999999999863211 11111111110 1 112222223333
Q ss_pred eCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC-C-CCCCCCccEEEEEecCCceEEe
Q 001628 299 ADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS-S-DPNKPKQDSFLLLGKSGHFYAF 376 (1042)
Q Consensus 299 ~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~-~~~~~~~~~l~vl~~~G~l~~~ 376 (1042)
........++.++.+.+++.....+.+.+........+.+.. ..+...... . ......+...+. ++
T Consensus 297 ~~s~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 364 (993)
T KOG1983|consen 297 PRSGKPFWICQGGMPRGSYGDRHCVSVEHDGTQVKLDFTSSV----IGLVGVTSEDPMSNFDANPNLVVL--------LE 364 (993)
T ss_pred ccccCcEEEecCCCccceecccceeEeecCCceeEEEEEecc----cceeeeecccccCccccCccceec--------cc
Confidence 333334556677777777665555555542221121111111 111111110 0 000011111111 11
Q ss_pred ecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCc--c
Q 001628 377 DDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQ--S 454 (1042)
Q Consensus 377 d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 454 (1042)
.. ......+....++ ....+....|...|++..+.+.-..+.-...-.. ......++.....+...++.. +
T Consensus 365 ~~----~~~~~~~~~~~~s--~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~v~~~~~~~ 437 (993)
T KOG1983|consen 365 EE----LVPPDLQTLGIPS--VSPPYLGSHHKSAITCLSLDGEVPTMLYPSGLAA-GNAQSVPPVSALSWPIVGGRLLQS 437 (993)
T ss_pred cc----cChhhhhccCCCc--ccchhccccCcceeeccccCCCcccccccccccc-ccccCCCchhccccceeeceeccc
Confidence 10 0000000001111 1122233345566666665543222211000000 000000110111111111111 1
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccc--------cCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK--------DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~--------~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw 526 (1042)
..+...+..+++.|+.+.+|+........++.+...... ....-...+..+.+++....+++++..+.+..-
T Consensus 438 ~~~~~~~g~~~~~d~~~~~~~~~~~s~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~ 517 (993)
T KOG1983|consen 438 APKLLEIGLTGHEDSTVSFLDAGGPSLRPLYKLDTRSAFLTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTL 517 (993)
T ss_pred CccceeecccccccceeeEEeccccccchhhhhccccccccCCcCCcccccccccCCcchhcccccccccccccceeeee
Confidence 344455677889999999999887766655544221110 000111344555667776777777777766666
Q ss_pred EeccCCcccccceeeec-----c--cccCccc-------------eeeeEE-----------------EeecCCCeEEEE
Q 001628 527 KLKYEPHAIENSFLSFT-----G--SKKGNSH-------------IIHSVK-----------------VMKINGSIISLN 569 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~-----~--~~~g~~~-------------~~~~~~-----------------~~~~~~~V~~l~ 569 (1042)
.+..........+.... + .+++..+ ..+.+. .........+.-
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~g~~~~~ 597 (993)
T KOG1983|consen 518 ELTDSIVTGAVSFFCADLNQDVSVFKWKGHDRLSPRSNPLSLPDGFQPFVDVQDRPPAGVTQGTLASGWILVKEGTVSGI 597 (993)
T ss_pred eecccccccceeeeehhhhhccccccccCchhccccccccCCCCccccceEEEecCCcceeeeccccceeccccceeeee
Confidence 55432221110110000 0 0110000 000000 000111122222
Q ss_pred EecCCcEEEEEecCCcEEEEeccCCeEEEeccccc---ccCCCeEEEEEEe--eecCCCCceEEEEEeCCceEEEE---E
Q 001628 570 MNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS---DISSGIVSLQFET--CSLQGFEKNFLVIATKDSSVLVL---D 641 (1042)
Q Consensus 570 ~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~---~~~~~V~sl~fs~--~~~~~~~~~~L~s~s~Dg~V~vw---d 641 (1042)
+..+-..+..++.++...+-+.++...++...... ........+.+.. +..+++.....+.++.-|..... .
T Consensus 598 ~l~~~~~v~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~r~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p 677 (993)
T KOG1983|consen 598 GLSDIPSVNVCTLDPNLILGDERGLSRVKNLKKSLRLSFRSIRPSRVSLTGSEYGLDGVSSILPVEGTDRGELIGFKILP 677 (993)
T ss_pred eccccceeeeccCCccceeccCCCceeEeeccCchhhhhccCCCceEecccceeccCchhhhhhcchhhccccccceecc
Confidence 22233556666666666666665555543322210 0111222222221 00011111222222222221111 1
Q ss_pred CCCCceeeeeecCCCC--CCCceEEEEecCCCcCccCcccc-ccccCCCCCCCCCCCCCCcEEEEEecCceEEEecCccc
Q 001628 642 SDNGNMLSTNLIHPKK--PSRALFMQILNGQDGLARGANLS-NVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAV 718 (1042)
Q Consensus 642 ~~tg~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~v~~~~~~~~~ll~~~~~~i~i~~~~~~~ 718 (1042)
...|..-...+-.... .+......... ..... .++++.. ......++++|+++.+++|++.+..
T Consensus 678 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-------~~s~~~s~~~~~~------~~~~~~~~~i~~e~~~~v~~~~~q~ 744 (993)
T KOG1983|consen 678 VSRGRFSAKAEDSLVNITSSLYSAITLAS-------DSSISSSLQGISY------ALAIEVPTLICGESAIRVFSVPAQQ 744 (993)
T ss_pred ccccccccccccCCCccccchhhhcchhh-------ccCcccccccccc------ccccccceEEecCCccceecccccc
Confidence 1111111111000000 00000000000 00000 1111111 1223578999999999999998743
Q ss_pred cccceeEEEeeecCcCeeeEEEEEe-cC-ceEEEEEEecCeEEEEcCCCccccccccccceeccCCCCCCccccce---e
Q 001628 719 QGVKKVLYKKKFHSSSCCWASTFYS-GS-DVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLM---C 793 (1042)
Q Consensus 719 qg~~k~~~~~~~~~~~~~~~~~~~~-~~-~~~lv~~~~~g~I~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~i---~ 793 (1042)
++.. ......++.....+.. .+ ...++++..+|+|.++++|+|+++....++- ++.......+.. .
T Consensus 745 ~~~~-----~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~g~i~~~slp~Lre~~~~v~~l----p~~~~~i~~~~~~~~g 815 (993)
T KOG1983|consen 745 CKEL-----QLIHEAPVVGISVLDGISKPEPSLDLLDANGHISKHSLPSLREEQFKVLPL----PLVKNIIKNKLTAGNG 815 (993)
T ss_pred cccc-----eeeccccceeeeeeecccCccceeeEeecCCCccceecchhhhhhccccCC----cchhhhcccchhcccc
Confidence 2211 1122122222222222 44 6889999999999999999999998555442 111111222222 2
Q ss_pred eccCCcEEEEcCcceEEEEEeecccccccccc----ccccccCCcccccccccccccccccccccceeeeeeccCccCCC
Q 001628 794 SSWDGELIMVNGNQEAFFISALRQRDFFRFLD----SACQVYSYDPTLLQEGVVSASIVQTEKKKGIFGSVLKGNKTKQA 869 (1042)
Q Consensus 794 ~s~~G~~~~~~~~~~~~~~s~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1042)
|+..|+..+..+..+.... ...++.+....+ +++..+.+.....+... + ++|.|++.|..
T Consensus 816 ~~~~~~~~~~~s~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~g~l~~g~---- 879 (993)
T KOG1983|consen 816 FSVHKVGELAASAVERSKK-TLEQELQELTNLGDISVLGLPLLKLEIPYAPIR----------Q-SDIKGVLFFGT---- 879 (993)
T ss_pred ccccchhheecchhhhhhc-cccccccccccccccccccccccchhhhhhhhh----------c-cccccccccCc----
Confidence 4555555555444444331 222222222222 23333333332222211 1 22222111101
Q ss_pred CcccchhhHHhHHHHHhhhccCCCCCCCcCCcCCCccccccccccccccCCCCcCCCcccchhhhhhHHHhhhhhhhccc
Q 001628 870 PDVEREETWEIIEELATIFSTANFQCDSENTVNLDLEEDEDLLNIDDIDLDGIREKPKEQSMLAVMNKQILSSKLQAFKG 949 (1042)
Q Consensus 870 ~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1042)
...+..+..||..++|.++.+-+.. |..+.
T Consensus 880 --------------------------------~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~------------ 909 (993)
T KOG1983|consen 880 --------------------------------VGCDPYKISELEGERISLATKYEVV------PISSG------------ 909 (993)
T ss_pred --------------------------------CCCChhhhcccccccccccccceee------ccccc------------
Confidence 1112235667888888887765422 11111
Q ss_pred chhhcccccccCCcccccccccccchHHHHHhcCCCCCCcch--HHHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHH
Q 001628 950 KWKQMKGKNEKNNMKEEQQDEKTGAVDQIKKKYGFSHSGEPS--VAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSM 1027 (1042)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1042)
+..+| ....+.....+.+..+|+++. +.++ ++.+|+++|+||+|||+++++||++|+++|++||++
T Consensus 910 ~~~~~-----------~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~ 977 (993)
T KOG1983|consen 910 DVSSR-----------SSARAILGPPDGEEPKYAQAS-GVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFSST 977 (993)
T ss_pred cCCcc-----------cccccccCCCcccchhhcccc-cccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHHHH
Confidence 00111 112233344556777888877 4443 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 001628 1028 AKEVLRIAEHDKK 1040 (1042)
Q Consensus 1028 ~~~~~~~~~~~~~ 1040 (1042)
|+|++.+++.||-
T Consensus 978 a~e~~~~~~~kk~ 990 (993)
T KOG1983|consen 978 AHELTGKYKVKKW 990 (993)
T ss_pred HHHHHhhhhhhhh
Confidence 9999999999985
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=237.54 Aligned_cols=291 Identities=15% Similarity=0.218 Sum_probs=233.1
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
...+.+|.+.|.|+++.|...|+++|+.|++|+|||+.++++.+. ..+|...|..+++++ -..+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--------------ltGhi~~vr~vavS~--rHpY 207 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--------------LTGHIETVRGVAVSK--RHPY 207 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--------------ecchhheeeeeeecc--cCce
Confidence 456678999999999999999999999999999999999984221 123456899999999 6889
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 273 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~ 273 (1042)
+++++.|+.|+.||+..++.++.+ .+|-..|.|+..+ |.-+.|++|+.|.++++||+++..
T Consensus 208 lFs~gedk~VKCwDLe~nkvIR~Y--------hGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~---------- 268 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKVIRHY--------HGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRA---------- 268 (460)
T ss_pred EEEecCCCeeEEEechhhhhHHHh--------ccccceeEEEecc-ccceeEEecCCcceEEEeeecccc----------
Confidence 999999999999999997766654 8899999999998 999999999999999999999720
Q ss_pred ccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC
Q 001628 274 ITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS 353 (1042)
Q Consensus 274 ~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (1042)
T Consensus 269 -------------------------------------------------------------------------------- 268 (460)
T KOG0285|consen 269 -------------------------------------------------------------------------------- 268 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 354 SDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 354 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
++ ..+.+|..+|+.+.+.+..+
T Consensus 269 ------------------~V----------------------------~~l~GH~~~V~~V~~~~~dp------------ 290 (460)
T KOG0285|consen 269 ------------------SV----------------------------HVLSGHTNPVASVMCQPTDP------------ 290 (460)
T ss_pred ------------------eE----------------------------EEecCCCCcceeEEeecCCC------------
Confidence 00 12237777777777544333
Q ss_pred hhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCE
Q 001628 434 LAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 513 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~ 513 (1042)
.++||+.|++||+||+..+.-...+ ..|...|.+++.+|....
T Consensus 291 ---------------------------qvit~S~D~tvrlWDl~agkt~~tl----------t~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 291 ---------------------------QVITGSHDSTVRLWDLRAGKTMITL----------THHKKSVRALCLHPKENL 333 (460)
T ss_pred ---------------------------ceEEecCCceEEEeeeccCceeEee----------ecccceeeEEecCCchhh
Confidence 6899999999999999987543222 678899999999999999
Q ss_pred EEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 514 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 514 Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
+|+++.| .++-|++....... ++ .+| ++-|.+|+.+. ..++++|+++|.+..||.++
T Consensus 334 fASas~d-nik~w~~p~g~f~~--nl---------sgh----------~~iintl~~ns-D~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 334 FASASPD-NIKQWKLPEGEFLQ--NL---------SGH----------NAIINTLSVNS-DGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred hhccCCc-cceeccCCccchhh--cc---------ccc----------cceeeeeeecc-CceEEEcCCceEEEEEecCc
Confidence 9999988 58889987665533 22 334 48899999875 56788999999999999987
Q ss_pred CeEEEec--ccccc---cCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 594 PTVLYQK--HIASD---ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 594 ~~~~~~~--~~~~~---~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+.-.-.. -...+ ....|.+.+|.. .+..|++|..|.+|.+|.-+
T Consensus 391 g~nyQ~~~t~vqpGSl~sEagI~as~fDk------tg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 391 GHNYQRGQTIVQPGSLESEAGIFASCFDK------TGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CcccccccccccCCccccccceeEEeecc------cCceEEeccCCcceEEEecc
Confidence 6543111 11111 234799999998 89999999999999999854
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-27 Score=236.55 Aligned_cols=325 Identities=15% Similarity=0.208 Sum_probs=245.5
Q ss_pred CEEEEEEcCCeEEE---EecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEE
Q 001628 51 KILAAATKDGRIKL---YGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITS 126 (1042)
Q Consensus 51 ~~LA~gs~dg~I~i---w~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~ 126 (1042)
+-|+.|.-.+..+. |-..-.....+.+ +..+|+.+-|+|+-...+++++|.+|++||..+++ ...+.+|...|..
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g-~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~d 155 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAG-HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFD 155 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhc-cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeE
Confidence 34444444444443 3322123333444 34789999999999889999999999999999999 6788999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEE
Q 001628 127 FTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLW 206 (1042)
Q Consensus 127 v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vW 206 (1042)
++|+..|++|++++.|=.+.+||+++...+.. . ..+|...|.++.|-| .++++++++.|.+|+.|
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-------s------~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-------S------LIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAW 220 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHHHHHHHH-------H------hcCcccceeeEEEEe--cCCeeeecccccceeEE
Confidence 99999999999999999999999988431110 1 234567999999999 78999999999999999
Q ss_pred eccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCC
Q 001628 207 DIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKL 286 (1042)
Q Consensus 207 d~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 286 (1042)
++.++-+++.+ .+|..-|..+..+ .||..+++++.|.+|++|-+.+.. .....
T Consensus 221 e~~tg~cv~t~--------~~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~-~k~~l----------------- 273 (406)
T KOG0295|consen 221 ECDTGYCVKTF--------PGHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQ-CKAEL----------------- 273 (406)
T ss_pred ecccceeEEec--------cCchHhEEEEEec-CCeeEEEecCCCceEEEEEeccch-hhhhh-----------------
Confidence 99999988875 7788899999998 899999999999999999988731 00001
Q ss_pred CCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEE
Q 001628 287 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLL 366 (1042)
Q Consensus 287 ~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~v 366 (1042)
T Consensus 274 -------------------------------------------------------------------------------- 273 (406)
T KOG0295|consen 274 -------------------------------------------------------------------------------- 273 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCc
Q 001628 367 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET 446 (1042)
Q Consensus 367 l~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 446 (1042)
..|+-+|-|+++.|....-. +....
T Consensus 274 --------------------------------------R~hEh~vEci~wap~~~~~~-----------------i~~at 298 (406)
T KOG0295|consen 274 --------------------------------------REHEHPVECIAWAPESSYPS-----------------ISEAT 298 (406)
T ss_pred --------------------------------------hccccceEEEEecccccCcc-----------------hhhcc
Confidence 12222233333222211000 00000
Q ss_pred CCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE
Q 001628 447 KLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 447 ~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw 526 (1042)
.....+.++.+++.|++||+||+..+.+ +++| .+|...|..++|+|.|++|+++.+|+++++|
T Consensus 299 -------~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL--------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 299 -------GSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTL--------VGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred -------CCCCCccEEEeecccceEEEEeccCCeE--EEEE--------ecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 0111345899999999999999998844 4555 7999999999999999999999999999999
Q ss_pred EeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 527 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
++....... ++ ..| ..-|+++.|..+..++++|+-|.++++|..
T Consensus 362 dl~~~~cmk--~~---------~ah----------~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 362 DLKNLQCMK--TL---------EAH----------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccceeee--cc---------CCC----------cceeEEEecCCCCceEEeccccceeeeeec
Confidence 998766533 22 222 366999999999999999999999999974
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=226.27 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=223.6
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
+..+.+|++.|..+.|+|++.++++|+.|..|.+|++...... +.. ...|.++|..+.|.+ |++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-----~~~--------lkgHsgAVM~l~~~~--d~s~ 104 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-----FWV--------LKGHSGAVMELHGMR--DGSH 104 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-----eee--------eccccceeEeeeecc--CCCE
Confidence 3456789999999999999999999999999999998765411 111 345789999999999 9999
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 273 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~ 273 (1042)
|++++.|.+|+.||+++|+.++.+ .+|..-|.+++-....-..+.+|+.||++++||++...
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~--------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---------- 166 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKH--------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---------- 166 (338)
T ss_pred EEEecCCceEEEEecccceeeehh--------ccccceeeecCccccCCeEEEecCCCceEEEEeecccc----------
Confidence 999999999999999999988774 77888888887542234567778999999999998621
Q ss_pred ccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC
Q 001628 274 ITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS 353 (1042)
Q Consensus 274 ~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (1042)
++..+
T Consensus 167 --~~~t~------------------------------------------------------------------------- 171 (338)
T KOG0265|consen 167 --AIKTF------------------------------------------------------------------------- 171 (338)
T ss_pred --hhhcc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 354 SDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 354 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
...-.++++.
T Consensus 172 ----------------------------------------------------~~kyqltAv~------------------ 181 (338)
T KOG0265|consen 172 ----------------------------------------------------ENKYQLTAVG------------------ 181 (338)
T ss_pred ----------------------------------------------------ccceeEEEEE------------------
Confidence 0000122222
Q ss_pred hhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCE
Q 001628 434 LAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 513 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~ 513 (1042)
+...+..+++|+-|+.|++||+.......+. .+|..+|+.|..+|++.+
T Consensus 182 ---------------------f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l----------sGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 182 ---------------------FKDTSDQVISGGIDNDIKVWDLRKNDGLYTL----------SGHADTITGLSLSRYGSF 230 (338)
T ss_pred ---------------------ecccccceeeccccCceeeeccccCcceEEe----------ecccCceeeEEeccCCCc
Confidence 2223346888999999999999876554333 899999999999999999
Q ss_pred EEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 514 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 514 Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
+.+-+.|.+|++|++........ .+. +..|..|. ..-....++|+|++.++..|+.|..|++||..+
T Consensus 231 llsnsMd~tvrvwd~rp~~p~~R-~v~----if~g~~hn--------feknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 231 LLSNSMDNTVRVWDVRPFAPSQR-CVK----IFQGHIHN--------FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cccccccceEEEEEecccCCCCc-eEE----Eeecchhh--------hhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 99999999999999986544221 000 00111111 112346678999999999999999999999998
Q ss_pred CeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEE
Q 001628 594 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLV 639 (1042)
Q Consensus 594 ~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~v 639 (1042)
..++|.-. +|.+.|.+++|.| ...+|.+++.|.+|++
T Consensus 298 r~~lyklp---Gh~gsvn~~~Fhp------~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 298 RRILYKLP---GHYGSVNEVDFHP------TEPIILSCSSDKTIYL 334 (338)
T ss_pred ccEEEEcC---CcceeEEEeeecC------CCcEEEEeccCceeEe
Confidence 77774322 3455999999999 9999999999999886
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=236.88 Aligned_cols=200 Identities=18% Similarity=0.221 Sum_probs=168.7
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC----CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcC
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN----NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g----~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~ 110 (1042)
..|...|.-+.||++|++||+|+.|.+..+|.... .+..++.+|. .+|..+.|+||.++|++++.|-.+.+||+.
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEECCCCCeEEecCchHheeeccCC
Confidence 35778899999999999999999999999998752 2345666776 789999999999999999999999999999
Q ss_pred CCceeeeeec--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 111 KKRLSHVHVC--KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 111 ~~~~~~~~~h--~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
++.......+ ...+++++|.||+..+++|+.|+.|..||++.... + .|. ......|.+++..+
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~------~----~W~----gvr~~~v~dlait~- 364 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL------G----NWE----GVRDPKVHDLAITY- 364 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh------h----ccc----ccccceeEEEEEcC-
Confidence 9996655554 47899999999999999999999999999998651 0 011 11235799999999
Q ss_pred CCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 189 AESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
||.++++.+.|..|++++..+..... ......+|++++.+ .+|.++++--.+..+.+||+.+
T Consensus 365 -Dgk~vl~v~~d~~i~l~~~e~~~dr~---------lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 365 -DGKYVLLVTVDKKIRLYNREARVDRG---------LISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred -CCcEEEEEecccceeeechhhhhhhc---------cccccCceeEEEEc-CCCcEEEEEcccCeeEEeecch
Confidence 99999999999999999998743221 24567899999998 9999999999999999999986
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.9e-25 Score=277.68 Aligned_cols=201 Identities=12% Similarity=0.230 Sum_probs=162.4
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-----Ce--EEEEecCCCcceEEEEEecC-CCEEEEEeCCCCEEEE
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-----NT--QALLESSEAVSTKFLQFLEN-QGILLNVTSTNLIEVW 107 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-----~~--~~~~~~~~~~~v~~l~fs~~-~~~Lvs~s~dg~I~vW 107 (1042)
+|.+.|.+++|+|++++||+|+.||.|+||+... .. ...........+.+++|++. +.+|++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 3788899999999999999999999999999641 10 01112222357888999874 6799999999999999
Q ss_pred EcCCCc-eeeeeecCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 108 DIDKKR-LSHVHVCKEEITSFTIMQ-HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 108 d~~~~~-~~~~~~h~~~It~v~~sp-~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
|+.+++ +..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+... + ..+ .+...|.++.|
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~----~~~----------~~~~~v~~v~~ 625 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-I----GTI----------KTKANICCVQF 625 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-E----EEE----------ecCCCeEEEEE
Confidence 999877 667788999999999997 789999999999999999987652 1 111 11347899999
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++. ++.++++|+.||.|++||+.+.+. ......+|...|.++.|. ++..|++++.||.|++||+..
T Consensus 626 ~~~-~g~~latgs~dg~I~iwD~~~~~~-------~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 626 PSE-SGRSLAFGSADHKVYYYDLRNPKL-------PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred eCC-CCCEEEEEeCCCeEEEEECCCCCc-------cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence 763 799999999999999999987541 122346788999999996 688999999999999999875
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=2.5e-25 Score=243.00 Aligned_cols=200 Identities=20% Similarity=0.347 Sum_probs=168.4
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR- 113 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~- 113 (1042)
||++.|++++|+|++++|++|+.||.|++|+... .....+..+. ..+..+.|+|++++|++++.++.|++||+.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 7889999999999999999999999999999873 3344444443 677789999999999999999999999999865
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
+..+..|...|.++.|++++.++++++.+|.|++||+.+... . ..+ ..|...|.++.|+| ++.+
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~---~~~---------~~~~~~i~~~~~~~--~~~~ 149 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--L---TTL---------RGHTDWVNSVAFSP--DGTF 149 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--E---EEe---------ccCCCcEEEEEEcC--cCCE
Confidence 667778888999999999999999999899999999986541 1 111 12456899999999 7887
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+++++.+|.|++||+.+++.+..+ ..|...+.+++|+ |++..+++++.||.|.+||+..
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATL--------TGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeE--------ecCccccceEEEC-CCcCEEEEecCCCcEEEEECCC
Confidence 888777999999999976655443 5677799999998 9999999999999999999975
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=261.30 Aligned_cols=201 Identities=18% Similarity=0.310 Sum_probs=171.2
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-C--eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc-CC
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-N--TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI-DK 111 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~--~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~-~~ 111 (1042)
.+...|+|+.|+|+|+.||+++.++.|++|+..+ . .+..+.+ +...|..++|+|++.++++++.|++|+|||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3467899999999999999999999999999862 2 3334433 4478999999999999999999999999999 44
Q ss_pred Cc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC
Q 001628 112 KR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE 190 (1042)
Q Consensus 112 ~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d 190 (1042)
+. +..+.+|...|++++|+|+++++++|+.|++|++||+.++.+ ... ...|...|++++|++ +
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--~~~------------l~~hs~~is~~~f~~--d 299 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--VRK------------LKGHSDGISGLAFSP--D 299 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE--EEe------------eeccCCceEEEEECC--C
Confidence 34 788899999999999999999999999999999999999652 111 244678999999999 9
Q ss_pred CCeEEEEECCCeEEEEeccCCee--EEEeCCcccccccccCC--ceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 191 SKRILIIFRDGLISLWDIRESKS--IFSMGGNVLQSVYHETK--QVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 191 ~~~lls~~~dg~I~vWd~~~~~~--~~~~~g~~~~~~~~~~~--~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+++|++++.|+.|++||+.++.. ... ...+.. .+++++|+ |++.++++++.|+.+++||+..+
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~--------~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKL--------LSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeec--------ccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999873 232 233333 69999998 99999999999999999999874
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=221.72 Aligned_cols=204 Identities=13% Similarity=0.254 Sum_probs=174.4
Q ss_pred eeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeE--EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEE
Q 001628 31 LVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQ--ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWD 108 (1042)
Q Consensus 31 ~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~--~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd 108 (1042)
.....||++.|..+.|+|++.++|+|+.|..|.+|+..|..+ .++.+|. ..|..+.|.+|+..|++++.|.+|++||
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs-gAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS-GAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc-ceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345679999999999999999999999999999999875433 3455555 7899999999999999999999999999
Q ss_pred cCCCc-eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 109 IDKKR-LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 109 ~~~~~-~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
.++++ ......|..-|.++..+.-+ ..+.+|+.||++++||+..... .+. ...+..++++.|.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--~~t-------------~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--IKT-------------FENKYQLTAVGFK 183 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--hhc-------------cccceeEEEEEec
Confidence 99998 77888999999998866555 5666889999999999997652 111 1124588999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
- .+..+++|+-|+.|++||++.+...+. +.+|...|+.+..+ ++|.++.+-+.|.++++||++-
T Consensus 184 d--~s~qv~sggIdn~ikvWd~r~~d~~~~--------lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 184 D--TSDQVISGGIDNDIKVWDLRKNDGLYT--------LSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred c--cccceeeccccCceeeeccccCcceEE--------eecccCceeeEEec-cCCCccccccccceEEEEEecc
Confidence 7 889999999999999999998776655 48999999999998 9999999999999999999974
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=231.27 Aligned_cols=283 Identities=16% Similarity=0.255 Sum_probs=238.1
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~ 113 (1042)
-|+...|+.+-|+|+..++|+++.|++|++||.. |+.+..+++|... |..+.|+..|++||+++.|=.+.+||.++..
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 4788999999999999999999999999999987 5677788888855 8889999999999999999999999998743
Q ss_pred --eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCC
Q 001628 114 --LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAES 191 (1042)
Q Consensus 114 --~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~ 191 (1042)
+....+|+..|.++.|-|-++++++++.|.+|+.|+++++-+ + +.+ .+|...|..+..+- ||
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-v----~t~---------~~h~ewvr~v~v~~--DG 247 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-V----KTF---------PGHSEWVRMVRVNQ--DG 247 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee-E----Eec---------cCchHhEEEEEecC--Ce
Confidence 778899999999999999999999999999999999999853 1 222 33456888899998 99
Q ss_pred CeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC---------------CCEEEEEecCCeEEE
Q 001628 192 KRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI---------------GSKVAVGYSNGEILI 256 (1042)
Q Consensus 192 ~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~---------------g~~l~sg~~dG~I~i 256 (1042)
..+++++.|.+|++|-+.++++.. .+..|+.+|.+++|. |. +.++.+++.|++|++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~--------~lR~hEh~vEci~wa-p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKA--------ELREHEHPVECIAWA-PESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhh--------hhhccccceEEEEec-ccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 999999999999999999875333 347889999999997 42 358999999999999
Q ss_pred EeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEE
Q 001628 257 WGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKL 336 (1042)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~ 336 (1042)
||+.++. .+
T Consensus 319 wdv~tg~-----------------------------------------cL------------------------------ 327 (406)
T KOG0295|consen 319 WDVSTGM-----------------------------------------CL------------------------------ 327 (406)
T ss_pred EeccCCe-----------------------------------------EE------------------------------
Confidence 9998740 00
Q ss_pred eeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEE
Q 001628 337 ALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL 416 (1042)
Q Consensus 337 ~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~ 416 (1042)
+.+.+|..-|..++
T Consensus 328 -----------------------------------------------------------------~tL~ghdnwVr~~a- 341 (406)
T KOG0295|consen 328 -----------------------------------------------------------------FTLVGHDNWVRGVA- 341 (406)
T ss_pred -----------------------------------------------------------------EEEecccceeeeeE-
Confidence 11225666666666
Q ss_pred eecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCC
Q 001628 417 ITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS 496 (1042)
Q Consensus 417 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~ 496 (1042)
++|.|.+|+++..|+++|+||+....+.. .+.
T Consensus 342 --------------------------------------f~p~Gkyi~ScaDDktlrvwdl~~~~cmk----------~~~ 373 (406)
T KOG0295|consen 342 --------------------------------------FSPGGKYILSCADDKTLRVWDLKNLQCMK----------TLE 373 (406)
T ss_pred --------------------------------------EcCCCeEEEEEecCCcEEEEEeccceeee----------ccC
Confidence 55556699999999999999999876542 337
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeccceEEEEEe
Q 001628 497 LSGIPLTALYYDGTSRVLVSGDQSGMVRIFKL 528 (1042)
Q Consensus 497 ~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~ 528 (1042)
.|..-|++++|+.+..++++|+-|.++++|..
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 88899999999999999999999999999963
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=6e-25 Score=239.98 Aligned_cols=286 Identities=15% Similarity=0.252 Sum_probs=223.3
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
.+.+|.++|++++|+|++++|++|+.+|.|++|++..... ... ...|...+..+.|+| ++++++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~------------~~~~~~~i~~~~~~~--~~~~l~ 67 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRT------------LKGHTGPVRDVAASA--DGTYLA 67 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEE------------EecCCcceeEEEECC--CCCEEE
Confidence 4568999999999999999999999999999999987651 111 122456788999999 788999
Q ss_pred EEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcccc
Q 001628 196 IIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQIT 275 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~ 275 (1042)
+++.+|.|.+||+.+++.+.. +..|...+.+++|+ +++..+++++.||.|.+|++.+..
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~~--------~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~------------ 126 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVRT--------LTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGK------------ 126 (289)
T ss_pred EEcCCCeEEEEEcCcccceEE--------EeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcE------------
Confidence 999999999999998654443 35677899999998 888888888889999999997520
Q ss_pred ccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCC
Q 001628 276 PICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSD 355 (1042)
Q Consensus 276 p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 355 (1042)
+.
T Consensus 127 ~~------------------------------------------------------------------------------ 128 (289)
T cd00200 127 CL------------------------------------------------------------------------------ 128 (289)
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhh
Q 001628 356 PNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLA 435 (1042)
Q Consensus 356 ~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~ 435 (1042)
.....|...++++.+.+
T Consensus 129 ----------------------------------------------~~~~~~~~~i~~~~~~~----------------- 145 (289)
T cd00200 129 ----------------------------------------------TTLRGHTDWVNSVAFSP----------------- 145 (289)
T ss_pred ----------------------------------------------EEeccCCCcEEEEEEcC-----------------
Confidence 00012334455555433
Q ss_pred hcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEE
Q 001628 436 KSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLV 515 (1042)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~La 515 (1042)
++.++++++.||.|++||+........+ ..|...|.+++|+|++..++
T Consensus 146 ----------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 146 ----------------------DGTFVASSSQDGTIKLWDLRTGKCVATL----------TGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred ----------------------cCCEEEEEcCCCcEEEEEccccccceeE----------ecCccccceEEECCCcCEEE
Confidence 3347888888999999999865443222 56777999999999999999
Q ss_pred EEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCe
Q 001628 516 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 595 (1042)
Q Consensus 516 sg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~ 595 (1042)
+++.+|.|++|++....... .+ .. +...|.+++|+|++.++++++.||.|++||+.++.
T Consensus 194 ~~~~~~~i~i~d~~~~~~~~--~~---------~~----------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 194 SSSSDGTIKLWDLSTGKCLG--TL---------RG----------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EecCCCcEEEEECCCCceec--ch---------hh----------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 99999999999997643322 11 12 34789999999998999999889999999999776
Q ss_pred EEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE
Q 001628 596 VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 641 (1042)
Q Consensus 596 ~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd 641 (1042)
.+.... .|...|.+++|+| ++.+|++++.||.|.+|+
T Consensus 253 ~~~~~~---~~~~~i~~~~~~~------~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLS---GHTNSVTSLAWSP------DGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEcc---ccCCcEEEEEECC------CCCEEEEecCCCeEEecC
Confidence 653222 3566899999999 899999999999999996
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=233.59 Aligned_cols=295 Identities=15% Similarity=0.248 Sum_probs=224.0
Q ss_pred ceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 113 RLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 113 ~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
+...+..|...|+.+.||++|+|||+++.|.+..+|++..... ..+..+ ..+|..+|..+.|+| |..
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~t---------lvgh~~~V~yi~wSP--Ddr 282 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKT---------LVGHSQPVSYIMWSP--DDR 282 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeee---------eecccCceEEEEECC--CCC
Confidence 3556778999999999999999999999999999999876541 122222 356788999999999 999
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
+|++++.+-.+.+||+.+|.....++ .++...+.+++|. |||..+++|+.|+.|..||++...
T Consensus 283 yLlaCg~~e~~~lwDv~tgd~~~~y~-------~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~--------- 345 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDTGDLRHLYP-------SGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNI--------- 345 (519)
T ss_pred eEEecCchHheeeccCCcchhhhhcc-------cCcCCCcceeEEc-cCCceeEecCCCCcEEEecCCcch---------
Confidence 99999999999999999987655442 3356789999996 999999999999999999998620
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
. -.|-.
T Consensus 346 ----~----------------~~W~g------------------------------------------------------ 351 (519)
T KOG0293|consen 346 ----L----------------GNWEG------------------------------------------------------ 351 (519)
T ss_pred ----h----------------hcccc------------------------------------------------------
Confidence 0 00110
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
...+.|.+++
T Consensus 352 -----------------------------------------------------vr~~~v~dla----------------- 361 (519)
T KOG0293|consen 352 -----------------------------------------------------VRDPKVHDLA----------------- 361 (519)
T ss_pred -----------------------------------------------------cccceeEEEE-----------------
Confidence 0012233334
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 512 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~ 512 (1042)
..++|..+++...|..|++++......+.+. ....+|++++.+.+++
T Consensus 362 ----------------------it~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-----------se~~~its~~iS~d~k 408 (519)
T KOG0293|consen 362 ----------------------ITYDGKYVLLVTVDKKIRLYNREARVDRGLI-----------SEEQPITSFSISKDGK 408 (519)
T ss_pred ----------------------EcCCCcEEEEEecccceeeechhhhhhhccc-----------cccCceeEEEEcCCCc
Confidence 3445557778889999999998876443222 2347999999999999
Q ss_pred EEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEec-CCcEEEEEecCCcEEEEec
Q 001628 513 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 513 ~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp-dg~~La~gs~dg~V~vwD~ 591 (1042)
++.+--.+..+++||+..+.... .+ .+|. ...-|..-||.- +..++|+|++|+.|+||+.
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~--kY---------~Ghk--------q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVR--KY---------FGHK--------QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHH--Hh---------hccc--------ccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 99999999999999998655433 22 2221 011244445553 5589999999999999999
Q ss_pred cCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 592 EGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 592 ~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
.++.++ +.+| ...|.+++|+| .+..++++|++||+|+||...
T Consensus 470 ~sgkll~~LsGH-----s~~vNcVswNP-----~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 470 ISGKLLAVLSGH-----SKTVNCVSWNP-----ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCceeEeecCC-----cceeeEEecCC-----CCHHHhhccCCCCeEEEecCC
Confidence 998886 5555 45999999998 367899999999999999854
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=5.4e-26 Score=238.06 Aligned_cols=293 Identities=16% Similarity=0.240 Sum_probs=228.3
Q ss_pred CeEEEEecCCCcceEEEEEec-CCCEEEEEeCCCCEEEEEcCC-Cc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001628 70 NTQALLESSEAVSTKFLQFLE-NQGILLNVTSTNLIEVWDIDK-KR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKIS 146 (1042)
Q Consensus 70 ~~~~~~~~~~~~~v~~l~fs~-~~~~Lvs~s~dg~I~vWd~~~-~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~ 146 (1042)
....++.+|. ..|+++.|.| .+.+|++++.|+.|+|||+.. +. +.++.+|..+|..++|++++..+++++-|+.|+
T Consensus 205 k~~~~~~gH~-kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHT-KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCc-cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4555666666 6788999999 788899999999999999876 33 888899999999999999999999999999999
Q ss_pred EEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccc
Q 001628 147 VLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVY 226 (1042)
Q Consensus 147 vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~ 226 (1042)
+||++++++ +..+ . ....++|+.|+|. +.+.+++|+.|+.|+.||+++++ .++...
T Consensus 284 lwDtETG~~-~~~f--~------------~~~~~~cvkf~pd-~~n~fl~G~sd~ki~~wDiRs~k--------vvqeYd 339 (503)
T KOG0282|consen 284 LWDTETGQV-LSRF--H------------LDKVPTCVKFHPD-NQNIFLVGGSDKKIRQWDIRSGK--------VVQEYD 339 (503)
T ss_pred eeccccceE-EEEE--e------------cCCCceeeecCCC-CCcEEEEecCCCcEEEEeccchH--------HHHHHH
Confidence 999999974 2111 1 2457899999994 45999999999999999999965 455567
Q ss_pred ccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEE
Q 001628 227 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRL 306 (1042)
Q Consensus 227 ~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l 306 (1042)
.|-+.|..+.|. ++|..+++.+.|++++||+...+ .++.-+
T Consensus 340 ~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~------------v~ik~i-------------------------- 380 (503)
T KOG0282|consen 340 RHLGAILDITFV-DEGRRFISSSDDKSVRIWENRIP------------VPIKNI-------------------------- 380 (503)
T ss_pred hhhhheeeeEEc-cCCceEeeeccCccEEEEEcCCC------------ccchhh--------------------------
Confidence 889999999999 99999999999999999998863 111000
Q ss_pred EEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeec
Q 001628 307 YIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLL 386 (1042)
Q Consensus 307 ~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~ 386 (1042)
-+
T Consensus 381 ---------------------------------------------------------------------~~--------- 382 (503)
T KOG0282|consen 381 ---------------------------------------------------------------------AD--------- 382 (503)
T ss_pred ---------------------------------------------------------------------cc---------
Confidence 00
Q ss_pred cCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEe
Q 001628 387 QYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGH 466 (1042)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~ 466 (1042)
.+.-.+.|+. .+|++.+++.-+
T Consensus 383 -------------------~~~hsmP~~~---------------------------------------~~P~~~~~~aQs 404 (503)
T KOG0282|consen 383 -------------------PEMHTMPCLT---------------------------------------LHPNGKWFAAQS 404 (503)
T ss_pred -------------------hhhccCccee---------------------------------------cCCCCCeehhhc
Confidence 0000111222 456666888888
Q ss_pred CCCcEEEEeCCCCceeeeeeccccccccCCCCC--CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecc
Q 001628 467 SDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 544 (1042)
Q Consensus 467 ~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~--~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~ 544 (1042)
.|..|.++.+... ++++. .+.+.+|. +--..+.|||||++|++|+.||.|.+|++.+.+... .+
T Consensus 405 ~dN~i~ifs~~~~-----~r~nk--kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~--~l----- 470 (503)
T KOG0282|consen 405 MDNYIAIFSTVPP-----FRLNK--KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS--KL----- 470 (503)
T ss_pred cCceEEEEecccc-----cccCH--hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh--cc-----
Confidence 9999999886543 22211 23446675 445678999999999999999999999998765533 22
Q ss_pred cccCccceeeeEEEeecCCCeEEEEEecC-CcEEEEEecCCcEEEEe
Q 001628 545 SKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 545 ~~~g~~~~~~~~~~~~~~~~V~~l~~spd-g~~La~gs~dg~V~vwD 590 (1042)
..| +++++.+.|.|- ...||+++.||.|++||
T Consensus 471 ----kah----------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 ----KAH----------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----ccC----------CcceEEEEecCCCcceeEecccCceeEecC
Confidence 344 499999999995 46899999999999997
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=250.22 Aligned_cols=296 Identities=14% Similarity=0.273 Sum_probs=231.0
Q ss_pred EEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001628 72 QALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVL 148 (1042)
Q Consensus 72 ~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vw 148 (1042)
...+..++...|.++.|+++|++|++++.++.+++|+..+.. ...+.+|...|.+++|+|++.++++|+.|++|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 445556656788889999999999999999999999996665 45557899999999999999999999999999999
Q ss_pred EccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccccc
Q 001628 149 KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHE 228 (1042)
Q Consensus 149 d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~ 228 (1042)
|+..... . ... ..+|...|++++|+| +++.+++|+.|++|+|||+.+++++.. +.+|
T Consensus 231 d~~~~~~-~---~~~---------l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~--------l~~h 287 (456)
T KOG0266|consen 231 DLKDDGR-N---LKT---------LKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK--------LKGH 287 (456)
T ss_pred eccCCCe-E---EEE---------ecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe--------eecc
Confidence 9944321 1 111 245788999999999 789999999999999999999776665 4889
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEE
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 308 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~ 308 (1042)
...|++++|. ++|..|++++.||.|++||+.++... .. -
T Consensus 288 s~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~----------~~-----------------------------~- 326 (456)
T KOG0266|consen 288 SDGISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKL----------CL-----------------------------K- 326 (456)
T ss_pred CCceEEEEEC-CCCCEEEEcCCCccEEEEECCCCcee----------ee-----------------------------e-
Confidence 9999999998 99999999999999999999974100 00 0
Q ss_pred ecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccC
Q 001628 309 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 388 (1042)
Q Consensus 309 ~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~ 388 (1042)
...
T Consensus 327 ------------------------------------------------------------------~~~----------- 329 (456)
T KOG0266|consen 327 ------------------------------------------------------------------LLS----------- 329 (456)
T ss_pred ------------------------------------------------------------------ccc-----------
Confidence 000
Q ss_pred CCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 389 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
...... +++++. +++++.++++++.|
T Consensus 330 --------------~~~~~~-~~~~~~---------------------------------------fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 330 --------------GAENSA-PVTSVQ---------------------------------------FSPNGKYLLSASLD 355 (456)
T ss_pred --------------CCCCCC-ceeEEE---------------------------------------ECCCCcEEEEecCC
Confidence 000111 456666 44555699999999
Q ss_pred CcEEEEeCCCCceeeeeeccccccccCCCCCC---CeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeeccc
Q 001628 469 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGI---PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS 545 (1042)
Q Consensus 469 g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~---~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~ 545 (1042)
+++++||+........+ .+|.. .+.+..+++.+.++++|+.|+.|.+|++....... .+
T Consensus 356 ~~~~~w~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~--~l------ 417 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTY----------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ--RL------ 417 (456)
T ss_pred CeEEEEEccCCcceeee----------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh--hh------
Confidence 99999999977654333 44443 45555668899999999999999999998643322 11
Q ss_pred ccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEe--cCCcEEEEecc
Q 001628 546 KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS--DQGYVYLLDTE 592 (1042)
Q Consensus 546 ~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs--~dg~V~vwD~~ 592 (1042)
..|. ...|..+.++|...++++++ .|+.+++|..+
T Consensus 418 ---~~h~---------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 ---EGHS---------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ---cCCC---------CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 2330 48899999999999999998 78999999754
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1e-25 Score=235.91 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=175.4
Q ss_pred ceeeee--ecccCceEEEEEcC-CCCEEEEEEcCCeEEEEecC--CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCC
Q 001628 29 PRLVFH--YGFPSGCNKFAYDP-LQKILAAATKDGRIKLYGRH--NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNL 103 (1042)
Q Consensus 29 ~~~~~~--~G~~~~v~~la~sp-~~~~LA~gs~dg~I~iw~~~--g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~ 103 (1042)
|+...+ .||+..|+++.|.| .+.||++|+.|+.|+||+.- ++...++.+|. .+|+.++|++++..+++++-|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~-k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR-KPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch-hhhhhhhccccCCeeeeeeccee
Confidence 444444 69999999999999 89999999999999999975 46778888887 78999999999999999999999
Q ss_pred EEEEEcCCCceeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 104 IEVWDIDKKRLSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 104 I~vWd~~~~~~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
|++||+++|+..........++|+.|.|++ +.+++|+.|+.|+.||+..+++ .+ .+ ..|-+.|..
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vq---------eY---d~hLg~i~~ 347 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQ---------EY---DRHLGAILD 347 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HH---------HH---Hhhhhheee
Confidence 999999999988777778889999999999 8899999999999999999872 11 11 124579999
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+.|-| ++.++++.+.|++++||+.+..-.+... ...+.....++..+ |++.++++-+.|+.|.++.+..
T Consensus 348 i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i-------~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 348 ITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNI-------ADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred eEEcc--CCceEeeeccCccEEEEEcCCCccchhh-------cchhhccCcceecC-CCCCeehhhccCceEEEEeccc
Confidence 99999 9999999999999999999986644321 12233445566676 9999999999999999998654
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=4.4e-26 Score=227.90 Aligned_cols=286 Identities=14% Similarity=0.288 Sum_probs=219.5
Q ss_pred CCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccc
Q 001628 78 SEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQ 156 (1042)
Q Consensus 78 ~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~ 156 (1042)
.....|.++++..+. +|+|..|++|+|||..+.. +..+.+|.+.|.|+.| +.+.+++|+.|.+|+|||+.+++.
T Consensus 195 e~skgVYClQYDD~k--iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEK--IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred ccCCceEEEEecchh--hhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch-
Confidence 345678888886655 9999999999999998877 7788999999999887 456999999999999999999873
Q ss_pred eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEE
Q 001628 157 IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSAC 236 (1042)
Q Consensus 157 ~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~ 236 (1042)
... ...|-..|..+.|+ .+++++++.|.++.+||+.....+ ...+.+.+|...|..+.
T Consensus 270 -l~t------------lihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~i-----t~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 270 -LNT------------LIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDI-----TLRRVLVGHRAAVNVVD 327 (499)
T ss_pred -hhH------------HhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHH-----HHHHHHhhhhhheeeec
Confidence 111 12356799999997 468999999999999999875421 12345688999999998
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCC
Q 001628 237 WACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVS 316 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~ 316 (1042)
|. ..++++++.|.+|++|++.++...
T Consensus 328 fd---~kyIVsASgDRTikvW~~st~efv--------------------------------------------------- 353 (499)
T KOG0281|consen 328 FD---DKYIVSASGDRTIKVWSTSTCEFV--------------------------------------------------- 353 (499)
T ss_pred cc---cceEEEecCCceEEEEeccceeee---------------------------------------------------
Confidence 85 569999999999999999873100
Q ss_pred CccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCC
Q 001628 317 MNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSA 396 (1042)
Q Consensus 317 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l 396 (1042)
T Consensus 354 -------------------------------------------------------------------------------- 353 (499)
T KOG0281|consen 354 -------------------------------------------------------------------------------- 353 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeC
Q 001628 397 PKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV 476 (1042)
Q Consensus 397 ~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~ 476 (1042)
..+.+|...|.|+. -.++++++|+.|.+||+||+
T Consensus 354 -----Rtl~gHkRGIAClQ-----------------------------------------Yr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 354 -----RTLNGHKRGIACLQ-----------------------------------------YRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred -----hhhhcccccceehh-----------------------------------------ccCeEEEecCCCceEEEEec
Confidence 00114444454544 34568999999999999999
Q ss_pred CCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeE
Q 001628 477 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 556 (1042)
Q Consensus 477 ~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 556 (1042)
+++.+..++ ++|..-|.++.|. ...+++|+.||.|+||++........ ....+-..
T Consensus 388 ~~G~cLRvL----------eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra------------~~~~~Cl~ 443 (499)
T KOG0281|consen 388 ECGACLRVL----------EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA------------PASTLCLR 443 (499)
T ss_pred cccHHHHHH----------hchHHhhhheeec--CceeeeccccceEEEEecccccCCcc------------cccchHHH
Confidence 999765444 8999999999996 46799999999999999986543210 00010112
Q ss_pred EEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeE
Q 001628 557 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 596 (1042)
Q Consensus 557 ~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~ 596 (1042)
.+..|.+.|-.++|. ...+++++.|.+|.|||...+..
T Consensus 444 ~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 444 TLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred hhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 334566999999997 56788899999999999865433
No 58
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=5.9e-23 Score=215.49 Aligned_cols=418 Identities=15% Similarity=0.162 Sum_probs=291.0
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCC----CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHN----NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR- 113 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g----~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~- 113 (1042)
..|...+|+|...-|.+-...|.+..|+..| +.+.+|+.+.+.-|.+++|.+|+ .+++|..+|.|.||+..+.+
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceE
Confidence 3467899999887777767779999999875 34556777777899999999999 68999999999999998877
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
....+.|++.|.+++...+|.+|- |+.|..|..||-.-... .+..+|. ..++|..++-.. +.
T Consensus 280 ~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~----r~~elPe---------~~G~iRtv~e~~---~d- 341 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL----RETELPE---------QFGPIRTVAEGK---GD- 341 (626)
T ss_pred EeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc----ccccCch---------hcCCeeEEecCC---Cc-
Confidence 445559999999999999998766 99999999999332221 1122222 235788787663 33
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 273 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~ 273 (1042)
+++|...+.|..=.++.+-.+.. .+|....+.++-+ |+.+.+++++.|+.+++|+-..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v---------~gh~delwgla~h-ps~~q~~T~gqdk~v~lW~~~k------------ 399 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTV---------QGHGDELWGLATH-PSKNQLLTCGQDKHVRLWNDHK------------ 399 (626)
T ss_pred EEEeeccceEEEeeecCCceEEE---------EecccceeeEEcC-CChhheeeccCcceEEEccCCc------------
Confidence 99999999987767776554443 6788899999998 9999999999999999999221
Q ss_pred ccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC
Q 001628 274 ITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS 353 (1042)
Q Consensus 274 ~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (1042)
+.|...-... .-++++.|
T Consensus 400 --------------------~~wt~~~~d~--~~~~~fhp---------------------------------------- 417 (626)
T KOG2106|consen 400 --------------------LEWTKIIEDP--AECADFHP---------------------------------------- 417 (626)
T ss_pred --------------------eeEEEEecCc--eeEeeccC----------------------------------------
Confidence 1222100000 00111111
Q ss_pred CCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 354 SDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 354 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
...+++.+..|...+.|......+-+ ..-..++++++|+|++
T Consensus 418 -------sg~va~Gt~~G~w~V~d~e~~~lv~~------------------~~d~~~ls~v~ysp~G------------- 459 (626)
T KOG2106|consen 418 -------SGVVAVGTATGRWFVLDTETQDLVTI------------------HTDNEQLSVVRYSPDG------------- 459 (626)
T ss_pred -------cceEEEeeccceEEEEecccceeEEE------------------EecCCceEEEEEcCCC-------------
Confidence 11457888888888888544222211 1225678888865555
Q ss_pred hhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCE
Q 001628 434 LAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 513 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~ 513 (1042)
.+||.|+.|+.|.||.++..... ..++ + ..++.+|+.+.|++|+++
T Consensus 460 --------------------------~~lAvgs~d~~iyiy~Vs~~g~~-y~r~-----~--k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 460 --------------------------AFLAVGSHDNHIYIYRVSANGRK-YSRV-----G--KCSGSPITHLDWSSDSQF 505 (626)
T ss_pred --------------------------CEEEEecCCCeEEEEEECCCCcE-EEEe-----e--eecCceeEEeeecCCCce
Confidence 49999999999999998754221 1111 1 345599999999999999
Q ss_pred EEEEeccceEEEEEeccCCcccccceeeeccc-ccCccceee-eEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 514 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIH-SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 514 Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
|.+-+-|-.+..|....-.... + +.+. |....+.+- .+....+...|..++-+.+.+.||+|.+.|.|++|..
T Consensus 506 ~~~~S~d~eiLyW~~~~~~~~t--s---~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPSECKQIT--S---VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred EEeccCceEEEEEccccCcccc--e---ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 9999999999999443222211 1 1111 000011000 0122345567888888999999999999999999976
Q ss_pred cCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 592 EGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
.-....-.-|...+|++.|++++|.- +...|++.+.|.+|..|++
T Consensus 581 Pc~s~rA~~he~~ghs~~vt~V~Fl~------~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSHEYGGHSSHVTNVAFLC------KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccceeeccccceeEEEEEee------CCceEEecCCCceEEEEEe
Confidence 43222222333345677999999997 7777777779999999985
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=224.41 Aligned_cols=190 Identities=18% Similarity=0.318 Sum_probs=157.1
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeee
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHV 117 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~ 117 (1042)
.|.|+.|+. ..+++|..|.+|+|||.+. ....++.+|. ..|.+|.|.. +.+++|+.|.+|+|||+++++ +.++
T Consensus 199 gVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHt-GSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 199 GVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHT-GSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred ceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCC-CcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH
Confidence 588998874 4689999999999999983 2334455665 7787777764 479999999999999999999 7788
Q ss_pred eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 118 HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 118 ~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
..|...|..+.|+. .++++++.|.+|.|||+..... ... ..+ ..+|..+|..+.|. ..+++++
T Consensus 274 ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~--it~-rrV--------LvGHrAaVNvVdfd----~kyIVsA 336 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD--ITL-RRV--------LVGHRAAVNVVDFD----DKYIVSA 336 (499)
T ss_pred hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH--HHH-HHH--------Hhhhhhheeeeccc----cceEEEe
Confidence 88999999999864 7999999999999999987541 001 011 45678899999996 4599999
Q ss_pred ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 198 FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+.|.+|++|++.+...++. +.+|...|.|+.|. |.++++|+.|.+|++||+..|
T Consensus 337 SgDRTikvW~~st~efvRt--------l~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRT--------LNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred cCCceEEEEeccceeeehh--------hhcccccceehhcc---CeEEEecCCCceEEEEecccc
Confidence 9999999999999877665 48899999999774 999999999999999999875
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=203.15 Aligned_cols=292 Identities=17% Similarity=0.259 Sum_probs=221.3
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
.+++...+..+++.|.++.|+-+|+|.++++.|.+|++|+...+.+ ... | .+|...|..++.+.
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--ikt-Y-----------sghG~EVlD~~~s~-- 69 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKT-Y-----------SGHGHEVLDAALSS-- 69 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--eee-e-----------cCCCceeeeccccc--
Confidence 4555777889999999999999999999999999999999888752 111 1 23455899998888
Q ss_pred CCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccccccc
Q 001628 190 ESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEE 269 (1042)
Q Consensus 190 d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~ 269 (1042)
|...+++++.|..+.+||+.+|+.++++ .+|..+|..+.|+ .+...+++|+.|.++++||-++.
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~--------rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~------- 133 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRF--------RGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR------- 133 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeec--------ccccceeeEEEec-CcceEEEeccccceeEEEEcccC-------
Confidence 8889999999999999999998888775 7899999999998 89999999999999999998862
Q ss_pred CCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEE
Q 001628 270 CGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEI 349 (1042)
Q Consensus 270 ~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1042)
...|++.+
T Consensus 134 ---s~ePiQil--------------------------------------------------------------------- 141 (307)
T KOG0316|consen 134 ---SFEPIQIL--------------------------------------------------------------------- 141 (307)
T ss_pred ---CCCccchh---------------------------------------------------------------------
Confidence 11222111
Q ss_pred ccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchh
Q 001628 350 ISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADE 429 (1042)
Q Consensus 350 ~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~ 429 (1042)
| .....|.+
T Consensus 142 ---------------------------d----------------------------ea~D~V~S---------------- 150 (307)
T KOG0316|consen 142 ---------------------------D----------------------------EAKDGVSS---------------- 150 (307)
T ss_pred ---------------------------h----------------------------hhcCceeE----------------
Confidence 0 00000000
Q ss_pred HHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeC
Q 001628 430 DYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDG 509 (1042)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp 509 (1042)
+.-.+..+++|+.||++|.||+..+.+.. ..-+.+|++++|++
T Consensus 151 -------------------------i~v~~heIvaGS~DGtvRtydiR~G~l~s------------Dy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 151 -------------------------IDVAEHEIVAGSVDGTVRTYDIRKGTLSS------------DYFGHPITSVSFSK 193 (307)
T ss_pred -------------------------EEecccEEEeeccCCcEEEEEeecceeeh------------hhcCCcceeEEecC
Confidence 11122378999999999999999886531 22346999999999
Q ss_pred CCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEE
Q 001628 510 TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL 589 (1042)
Q Consensus 510 ~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vw 589 (1042)
++..+.+++.|+++++.|-.++++.. .+ .+|. ...-=...+++....++++|++||.|++|
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~--sY---------kGhk--------n~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLK--SY---------KGHK--------NMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHH--Hh---------cccc--------cceeeeeeeecccceeEEeccCCceEEEE
Confidence 99999999999999999988776644 22 2332 01223455677778899999999999999
Q ss_pred eccCCeEEEecccccccCCC-eEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 590 DTEGPTVLYQKHIASDISSG-IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 590 D~~~~~~~~~~~~~~~~~~~-V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
|+....++.+... +... |+++.|.| ....+++++ ++.+..|-.
T Consensus 255 dLvd~~~~sk~~~---~~~v~v~dl~~hp------~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 255 DLVDETQISKLSV---VSTVIVTDLSCHP------TMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred Eeccceeeeeecc---CCceeEEeeeccc------CccceeEec-CCceeceee
Confidence 9998888733322 2334 89999999 788888887 455666753
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=5.6e-24 Score=216.35 Aligned_cols=213 Identities=10% Similarity=0.192 Sum_probs=165.1
Q ss_pred eeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCC---EEEEEeCCCCEEEEEc
Q 001628 33 FHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQG---ILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~---~Lvs~s~dg~I~vWd~ 109 (1042)
..+-|+.-|+++... .++|.+|+.||.+++|+..|+...++.+|. .++..+.|.-... .+++++.|.++++|-+
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght-~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHT-GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCC-cceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 334556666666655 789999999999999999988888888887 7888788765333 5999999999999998
Q ss_pred CCCc-----eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccc-eeeeee------ecccccccCc----c
Q 001628 110 DKKR-----LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQ-IVKMKY------IIPLSASHGN----E 173 (1042)
Q Consensus 110 ~~~~-----~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~-~~~~~~------~ip~~~~~~~----~ 173 (1042)
+.+. +....+|...|-++...+++..+++|+.|.+|.+|+....... +....- ........+. .
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 8765 3344589999999999999999999999999999994332210 000000 0000000000 3
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCe
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+... .....+.++.++ |...+|++|+.|..
T Consensus 257 ~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~-~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYS-PLSKLLASGSSDRH 323 (423)
T ss_pred cccccceeeEEEcC---CCceEeecccceEEEEEeecccceeee---------ecCcceeEeecc-cccceeeecCCCCc
Confidence 56789999999995 778999999999999999998866542 345689999998 89999999999999
Q ss_pred EEEEeCCC
Q 001628 254 ILIWGVPS 261 (1042)
Q Consensus 254 I~iWd~~~ 261 (1042)
|++||.+.
T Consensus 324 irl~DPR~ 331 (423)
T KOG0313|consen 324 IRLWDPRT 331 (423)
T ss_pred eeecCCCC
Confidence 99999987
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=226.62 Aligned_cols=313 Identities=12% Similarity=0.198 Sum_probs=232.4
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
..+..|...|+++++.|.|.++++|+-|.+|++||+........... ... ......|.++.|+| .++.|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr---~l~------P~E~h~i~sl~ys~--Tg~~i 229 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR---QLQ------PCETHQINSLQYSV--TGDQI 229 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh---ccC------cccccccceeeecC--CCCeE
Confidence 35556778899999999999999999999999999988653221110 011 11234899999999 89999
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcc----cccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccC
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNV----LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEEC 270 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~----~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~ 270 (1042)
++.+.....+|+|-+.........|.. +....+|...++|.||++.+...|++++.||++++|++.....
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------ 303 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------ 303 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------
Confidence 999999999999998766555443432 3445889999999999955677899999999999999986310
Q ss_pred CccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEc
Q 001628 271 GTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEII 350 (1042)
Q Consensus 271 ~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1042)
...++
T Consensus 304 --------------------------------q~qVi------------------------------------------- 308 (641)
T KOG0772|consen 304 --------------------------------QLQVI------------------------------------------- 308 (641)
T ss_pred --------------------------------heeEE-------------------------------------------
Confidence 00000
Q ss_pred cCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhH
Q 001628 351 SSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADED 430 (1042)
Q Consensus 351 ~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~ 430 (1042)
-. ....+.+-+++.++|
T Consensus 309 --------------------------k~-----------------------k~~~g~Rv~~tsC~~-------------- 325 (641)
T KOG0772|consen 309 --------------------------KT-----------------------KPAGGKRVPVTSCAW-------------- 325 (641)
T ss_pred --------------------------ee-----------------------ccCCCcccCceeeec--------------
Confidence 00 000022234555564
Q ss_pred HHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCC--CeEEEEEe
Q 001628 431 YSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI--PLTALYYD 508 (1042)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~--~V~~l~fs 508 (1042)
++++.++|+|..||+|.+|+..+....+.+.++ ..|.. .|+||.|+
T Consensus 326 -------------------------nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-------~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 326 -------------------------NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-------DAHLPGQDITSISFS 373 (641)
T ss_pred -------------------------CCCcchhhhcccCCceeeeecCCcccccceEee-------eccCCCCceeEEEec
Confidence 445558999999999999998776666666554 45654 99999999
Q ss_pred CCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEec------
Q 001628 509 GTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD------ 582 (1042)
Q Consensus 509 p~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~------ 582 (1042)
++|++|++-+.|++++||++....... ..+ .|.... -+-+.++|||+.++|++|..
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL-~~~-------tgL~t~----------~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPL-NVR-------TGLPTP----------FPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred cccchhhhccCCCceeeeeccccccch-hhh-------cCCCcc----------CCCCccccCCCceEEEecccccCCCC
Confidence 999999999999999999997544322 000 111111 45688999999999999864
Q ss_pred CCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE
Q 001628 583 QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 641 (1042)
Q Consensus 583 dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd 641 (1042)
.|++.+||..+...+++..+. ...|..+.|.| .-+.|+.|+.||++.||=
T Consensus 436 ~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~Whp------kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDTVYKIDIS---TASVVRCLWHP------KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEEeccceeeEEEecCC---CceEEEEeecc------hhhheeeecCCCceEEEE
Confidence 578999999998888766654 45899999999 889999999999999984
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-21 Score=212.31 Aligned_cols=472 Identities=17% Similarity=0.217 Sum_probs=298.3
Q ss_pred CcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--eeeeeecC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccc
Q 001628 80 AVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LSHVHVCK-EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQ 156 (1042)
Q Consensus 80 ~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~~~~~h~-~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~ 156 (1042)
..+|++|+|+...+.||.+-.+|.|.+||+...= ...+++++ ..|.+++|+ ++..|++.+.+|.|.-||+.+....
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 5789999999999999999999999999998865 34555554 579999998 6677899999999999999987621
Q ss_pred eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEE
Q 001628 157 IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSAC 236 (1042)
Q Consensus 157 ~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~ 236 (1042)
|.+ ....++|.+++.+| .+..+++|+.||.+...+...+...+.. .+....+.|.++.
T Consensus 104 -----~~~---------d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRvLsls 161 (691)
T KOG2048|consen 104 -----YNI---------DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRVLSLS 161 (691)
T ss_pred -----EEe---------cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEe------ecccccceEEEEE
Confidence 211 12357999999999 8899999999998888888888766642 2233468999999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCC
Q 001628 237 WACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVS 316 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~ 316 (1042)
|+ |++..++.|+.||.|++||+..+.... +...++.
T Consensus 162 w~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~----------~~~~~~d--------------------------------- 197 (691)
T KOG2048|consen 162 WN-PTGTKIAGGSIDGVIRIWDVKSGQTLH----------IITMQLD--------------------------------- 197 (691)
T ss_pred ec-CCccEEEecccCceEEEEEcCCCceEE----------Eeeeccc---------------------------------
Confidence 98 999999999999999999998741110 0000000
Q ss_pred CccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCC
Q 001628 317 MNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSA 396 (1042)
Q Consensus 317 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l 396 (1042)
-+.+.....+|..
T Consensus 198 -------------------------------------------------~l~k~~~~iVWSv------------------ 210 (691)
T KOG2048|consen 198 -------------------------------------------------RLSKREPTIVWSV------------------ 210 (691)
T ss_pred -------------------------------------------------ccccCCceEEEEE------------------
Confidence 0000012334441
Q ss_pred CccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeC
Q 001628 397 PKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDV 476 (1042)
Q Consensus 397 ~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~ 476 (1042)
.|. ....+++|..-|+|++||.
T Consensus 211 ------------------~~L----------------------------------------rd~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 211 ------------------LFL----------------------------------------RDSTIASGDSAGTVTFWDS 232 (691)
T ss_pred ------------------EEe----------------------------------------ecCcEEEecCCceEEEEcc
Confidence 111 1126899999999999999
Q ss_pred CCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeE
Q 001628 477 SCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV 556 (1042)
Q Consensus 477 ~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 556 (1042)
..+.+. +.+..|.+.|.+|+.++++.++++++.|+.|.-|...++... +.. . .
T Consensus 233 ~~gTLi----------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~----wv~----------~---~ 285 (691)
T KOG2048|consen 233 IFGTLI----------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE----WVI----------N---S 285 (691)
T ss_pred cCcchh----------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc----eee----------e---c
Confidence 988664 333778899999999999999999999999999998876441 100 0 1
Q ss_pred EEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCce
Q 001628 557 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 636 (1042)
Q Consensus 557 ~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~ 636 (1042)
....|...|.+++..++ .|.+|+.|+++.+--.+..... .|.. -..| | .+..+.++..+..
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~--~h~~--------~~~~-p------~~~~v~~a~~~~L 346 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNM--DHRQ--------KNLF-P------ASDRVSVAPENRL 346 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCch--hhhc--------cccc-c------ccceeecCccceE
Confidence 11223477999999966 9999999999988766542221 1111 0011 1 3444444444555
Q ss_pred EEEEECCCCceeeeeec--CCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEecCceEEEec
Q 001628 637 VLVLDSDNGNMLSTNLI--HPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSL 714 (1042)
Q Consensus 637 V~vwd~~tg~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~~~~i~i~~~ 714 (1042)
+..|.......-..... +.+.+-.-++-..+.+....+|. ...+++..+...+-...+||.+
T Consensus 347 ~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~----------------aiSPdg~~Ia~st~~~~~iy~L 410 (691)
T KOG2048|consen 347 LVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCA----------------AISPDGNLIAISTVSRTKIYRL 410 (691)
T ss_pred EEEeccccccceeccCcccccccChhhheeeecCCccceeee----------------ccCCCCCEEEEeeccceEEEEe
Confidence 55554332222211111 11111111111111111111111 1234567777788889999999
Q ss_pred CccccccceeEEEeee-cCcCeeeEEEEEe-cCceEEEEEEecCeEEEE--cCCCccccccccccceeccCCCCCCcccc
Q 001628 715 SHAVQGVKKVLYKKKF-HSSSCCWASTFYS-GSDVGLMLLFTSGKFEIR--SLPELSLLKETSIRGFVYLTPKPNSLSNT 790 (1042)
Q Consensus 715 ~~~~qg~~k~~~~~~~-~~~~~~~~~~~~~-~~~~~lv~~~~~g~I~i~--slp~l~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1042)
... +..|+. ++.- .........+..+ .+..-+++.-..+.++++ +.|..+.+...+... +-+..+
T Consensus 411 ~~~--~~vk~~-~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~--------~~~~I~ 479 (691)
T KOG2048|consen 411 QPD--PNVKVI-NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA--------KCPSIS 479 (691)
T ss_pred ccC--cceeEE-EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc--------CCCcce
Confidence 753 222221 1111 1011111122223 333334444466777777 667777766655331 224577
Q ss_pred ceeeccCCcEEEEcCcceEEEEEeec
Q 001628 791 LMCSSWDGELIMVNGNQEAFFISALR 816 (1042)
Q Consensus 791 ~i~~s~~G~~~~~~~~~~~~~~s~l~ 816 (1042)
.+..|++|+++++.+.+....+.-|.
T Consensus 480 ~l~~SsdG~yiaa~~t~g~I~v~nl~ 505 (691)
T KOG2048|consen 480 RLVVSSDGNYIAAISTRGQIFVYNLE 505 (691)
T ss_pred eEEEcCCCCEEEEEeccceEEEEEcc
Confidence 78889999999998756555443333
No 64
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.93 E-value=1.9e-23 Score=231.07 Aligned_cols=316 Identities=21% Similarity=0.278 Sum_probs=199.1
Q ss_pred CeEEEEEeCCCCEEEEEeccceEEEEEeccCCccc--------ccce---------eeecccc----cC-ccceeeeEEE
Q 001628 501 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI--------ENSF---------LSFTGSK----KG-NSHIIHSVKV 558 (1042)
Q Consensus 501 ~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~--------~~~~---------~~~~~~~----~g-~~~~~~~~~~ 558 (1042)
.|+++.|+++...|++|..+|.|.||++..++... +..+ ..+.++. .+ .+.++|.+.+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 68999999999999999999999999998765432 0010 1111221 11 3457788999
Q ss_pred eecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEeccccc-----ccCCCeEEEEEEeee--cCCCCceEEEEE
Q 001628 559 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIAS-----DISSGIVSLQFETCS--LQGFEKNFLVIA 631 (1042)
Q Consensus 559 ~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~-----~~~~~V~sl~fs~~~--~~~~~~~~L~s~ 631 (1042)
....++|++++.| |-.++|+|+++|.+.|.|++++.++|..++.+ .....|+++.|+.+. .++|...+|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 9999999999987 89999999999999999999999999988776 134589999999654 455888999999
Q ss_pred eCCceEEEEECC---CCceeeee-ecCCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEecC
Q 001628 632 TKDSSVLVLDSD---NGNMLSTN-LIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 707 (1042)
Q Consensus 632 s~Dg~V~vwd~~---tg~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~~~ 707 (1042)
++.|.+.+|.+. +|++...+ .......++++.+..++..++..+.++...++++++|..++ +++++|+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~------g~vVvvSe~ 235 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP------GYVVVVSES 235 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----------EEEEEE-SS
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC------cEEEEEccc
Confidence 999999999743 24443222 22235668999999999888888888888999999998888 789999999
Q ss_pred ceEEEecCccccccceeEEEeeecCc-CeeeEEEEE---ecCceEEEEEEecCeEEEEcCCCccccccccccceeccCCC
Q 001628 708 AACAYSLSHAVQGVKKVLYKKKFHSS-SCCWASTFY---SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPK 783 (1042)
Q Consensus 708 ~i~i~~~~~~~qg~~k~~~~~~~~~~-~~~~~~~~~---~~~~~~lv~~~~~g~I~i~slp~l~~~~~~~~~~~~~~~~~ 783 (1042)
++|+|++.+ .|...|.. ... .|..+.++. ...+..|++++.+|.|++||||+|+++.+++++. .++
T Consensus 236 ~irv~~~~~-----~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~----~~d 305 (395)
T PF08596_consen 236 DIRVFKPPK-----SKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP----PLD 305 (395)
T ss_dssp EEEEE-TT--------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-------
T ss_pred ceEEEeCCC-----Ccccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC----ccc
Confidence 999999987 44444433 322 233333333 3467889999999999999999999999999874 222
Q ss_pred CCCccccceeeccCCcEEEEcCcceEEEEEeeccccc--cccccccccccCCcc
Q 001628 784 PNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQRDF--FRFLDSACQVYSYDP 835 (1042)
Q Consensus 784 ~~~~~~~~i~~s~~G~~~~~~~~~~~~~~s~l~~~~~--~~~~~~~~~~~~~~~ 835 (1042)
. ......+++.+|++++..+++|+.+++++.+... .+.......||.+.+
T Consensus 306 ~--~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~~~~d~L~np~~ 357 (395)
T PF08596_consen 306 S--RRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLAPPTDTLYNPNL 357 (395)
T ss_dssp H--HHHTT-EE-TTS-EEEE-SSSEEEEEEEES--------------B---TT-
T ss_pred c--ccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccCCCCCeEECCCC
Confidence 2 3344556679999999999999999999998776 334566677777766
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=199.85 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=205.1
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeE
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEI 254 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I 254 (1042)
.++++|..+.|+- +|++.++++.|.+|++|+...+..+.. ..+|..+|..++.+ .|...|++++.|..+
T Consensus 15 ~~qgaV~avryN~--dGnY~ltcGsdrtvrLWNp~rg~likt--------YsghG~EVlD~~~s-~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 15 CAQGAVRAVRYNV--DGNYCLTCGSDRTVRLWNPLRGALIKT--------YSGHGHEVLDAALS-SDNSKFASCGGDKAV 83 (307)
T ss_pred ccccceEEEEEcc--CCCEEEEcCCCceEEeecccccceeee--------ecCCCceeeecccc-ccccccccCCCCceE
Confidence 4578999999999 999999999999999999999766665 48899999999998 799999999999999
Q ss_pred EEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeE
Q 001628 255 LIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 334 (1042)
Q Consensus 255 ~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~ 334 (1042)
.+||+.++..
T Consensus 84 ~vwDV~TGkv---------------------------------------------------------------------- 93 (307)
T KOG0316|consen 84 QVWDVNTGKV---------------------------------------------------------------------- 93 (307)
T ss_pred EEEEcccCee----------------------------------------------------------------------
Confidence 9999998510
Q ss_pred EEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEE
Q 001628 335 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAM 414 (1042)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~ 414 (1042)
+ ..+.+|...|..+
T Consensus 94 --------------------------------------~----------------------------Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 94 --------------------------------------D----------------------------RRFRGHLAQVNTV 107 (307)
T ss_pred --------------------------------------e----------------------------eecccccceeeEE
Confidence 0 1123677777777
Q ss_pred EEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeecccccccc
Q 001628 415 KLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD 494 (1042)
Q Consensus 415 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~ 494 (1042)
+|.. ...++++|+-|.++|+||-.+....|+..|
T Consensus 108 ~fNe---------------------------------------esSVv~SgsfD~s~r~wDCRS~s~ePiQil------- 141 (307)
T KOG0316|consen 108 RFNE---------------------------------------ESSVVASGSFDSSVRLWDCRSRSFEPIQIL------- 141 (307)
T ss_pred EecC---------------------------------------cceEEEeccccceeEEEEcccCCCCccchh-------
Confidence 7543 344899999999999999998888777766
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC
Q 001628 495 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 574 (1042)
Q Consensus 495 ~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg 574 (1042)
......|.++..+ ...+++|+.||++|.|++..+.... ..+ ..||+++.|++|+
T Consensus 142 -dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s--------------Dy~---------g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 142 -DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS--------------DYF---------GHPITSVSFSKDG 195 (307)
T ss_pred -hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh--------------hhc---------CCcceeEEecCCC
Confidence 3445678887765 4678999999999999998765533 111 2679999999999
Q ss_pred cEEEEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeee
Q 001628 575 QHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 652 (1042)
Q Consensus 575 ~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~ 652 (1042)
+.+.+++.|+++++.|-.+++++ |++|.. ...=...+++. ....+++|++||.|++||+..+..+..++
T Consensus 196 nc~La~~l~stlrLlDk~tGklL~sYkGhkn---~eykldc~l~q------sdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGKLLKSYKGHKN---MEYKLDCCLNQ------SDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred CEEEEeeccceeeecccchhHHHHHhccccc---ceeeeeeeecc------cceeEEeccCCceEEEEEeccceeeeeec
Confidence 99999999999999999999998 777754 22444556666 78899999999999999999888887664
Q ss_pred c
Q 001628 653 I 653 (1042)
Q Consensus 653 ~ 653 (1042)
.
T Consensus 267 ~ 267 (307)
T KOG0316|consen 267 V 267 (307)
T ss_pred c
Confidence 3
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=213.15 Aligned_cols=162 Identities=15% Similarity=0.307 Sum_probs=140.6
Q ss_pred cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCcee---------eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 001628 77 SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLS---------HVHVCKEEITSFTIMQHSNYMLLGDTAGKISV 147 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~---------~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~v 147 (1042)
...+.-+.+..|+||+++|++++-||.|.|||..++++. .+.-+...|.|+.|+.|...|++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 334556778999999999999999999999999988732 34457899999999999999999999999999
Q ss_pred EEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccc
Q 001628 148 LKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYH 227 (1042)
Q Consensus 148 wd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~ 227 (1042)
|.+.++++ +.+. ...|...|+|+.|+. |+..+++++.|.++++.-+.+|++ ++.+.+
T Consensus 290 Wri~tG~C-lRrF------------drAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~--------LKEfrG 346 (508)
T KOG0275|consen 290 WRIETGQC-LRRF------------DRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKC--------LKEFRG 346 (508)
T ss_pred EEEecchH-HHHh------------hhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchh--------HHHhcC
Confidence 99999875 2211 334677999999999 899999999999999999999654 445689
Q ss_pred cCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 228 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 228 ~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
|...|+.+.|. ++|..+++++.||+|++|+..+.
T Consensus 347 HsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 347 HSSYVNEATFT-DDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred ccccccceEEc-CCCCeEEEecCCccEEEecCcch
Confidence 99999999998 99999999999999999999874
No 67
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=6.3e-22 Score=215.77 Aligned_cols=556 Identities=12% Similarity=0.097 Sum_probs=331.8
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCe-EEEEecCCCcceEEEEEecCCC---EEEEEeCCCCEEEEEcC
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNT-QALLESSEAVSTKFLQFLENQG---ILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~-~~~~~~~~~~~v~~l~fs~~~~---~Lvs~s~dg~I~vWd~~ 110 (1042)
-|.+..+...+| .-+.++|.|.. ..|.+||.. +. ..+....+..+|+++.|.|... ++++|+.|+.|.+|.++
T Consensus 11 Vgc~R~~~v~sw-~~~~~vafGa~-~~Iav~dp~-k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~ 87 (764)
T KOG1063|consen 11 VGCNRVPKVSSW-GPGGLVAFGAG-PAIAVADPE-KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR 87 (764)
T ss_pred eccccccccccc-cccceEEecCC-ceEEEeCcc-cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence 344444444556 34456788775 679999988 44 3333344458999999999887 89999999999999999
Q ss_pred CCce---eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc
Q 001628 111 KKRL---SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 111 ~~~~---~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p 187 (1042)
.... ..+.+|. +.|+++......+.+...||++++||....+.-+.. ..++ .. ...-..|+++.|
T Consensus 88 ~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~-~~rf--~~-------k~~ipLcL~~~~ 155 (764)
T KOG1063|consen 88 DEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA-VLRF--EI-------KEAIPLCLAALK 155 (764)
T ss_pred ehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh-heeh--hh-------hhHhhHHHhhhc
Confidence 5553 3444444 455556555555555578999999999554410000 0111 00 011234555566
Q ss_pred CCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCC--CEEEEEecCCeEEEEeCCCcccc
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIG--SKVAVGYSNGEILIWGVPSILNL 265 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g--~~l~sg~~dG~I~iWd~~~~~~~ 265 (1042)
..+.-.++.|+.+..|.++.-..++. .....+.+|...|.+++|..+.+ -+|++++.|..|++|.+.-....
T Consensus 156 ~~~~~lla~Ggs~~~v~~~s~~~d~f------~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 156 NNKTFLLACGGSKFVVDLYSSSADSF------ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred cCCcEEEEecCcceEEEEeccCCcce------eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 21333455666777888887665432 12345689999999999984333 47899999999999998643100
Q ss_pred ccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCee
Q 001628 266 KTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCI 345 (1042)
Q Consensus 266 ~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 345 (1042)
...... ..+.. ..+...+
T Consensus 230 ~~~~~e--------~~~t~----------------~~~~~~f-------------------------------------- 247 (764)
T KOG1063|consen 230 DSNERE--------DSLTT----------------LSNLPVF-------------------------------------- 247 (764)
T ss_pred cccccc--------ccccc----------------ccCCcee--------------------------------------
Confidence 000000 00000 0000000
Q ss_pred eEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccc
Q 001628 346 DMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS 425 (1042)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s 425 (1042)
..+ +++. |. + .....+-+|..-|..+.+.|.+..+++
T Consensus 248 -------------------~~l---~~i~-~~--------i------------s~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 248 -------------------MIL---EEIQ-YR--------I------------SFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred -------------------eee---eeEE-EE--------E------------ehhhhhcCcccceEEEEEccchhhhee
Confidence 000 0000 00 0 000123489999999999999999999
Q ss_pred cchhHHHhhhhcCC----CCCCCCcCC----CCCCcc--CCCCccEEEEEeCCCcEEEEeCCCC-ceeeeeecccccccc
Q 001628 426 SADEDYSLLAKSVP----PLLDFETKL----KDGSQS--HSKVKNLFITGHSDGAINFWDVSCP-LFLLILSLKQQSEKD 494 (1042)
Q Consensus 426 ~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~-~~~~l~~l~~~~~~~ 494 (1042)
++.|....+|.... |...+..+. .+|... ++++++.+++-+.-|..++|..... ...+ +..
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~--------~~~ 356 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ--------EPV 356 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee--------ccc
Confidence 99998888887442 322222222 222323 8899999999999999999983322 2221 123
Q ss_pred CCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcc-cc-----------------c-ceeeeccc----------
Q 001628 495 FSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA-IE-----------------N-SFLSFTGS---------- 545 (1042)
Q Consensus 495 ~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~-~~-----------------~-~~~~~~~~---------- 545 (1042)
+.+|-..|+.++|+|.|.+|.+.+.|.+-|||-.-..+.. .| + .+.++++.
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 3899999999999999999999999999999854411110 00 0 01111100
Q ss_pred -----------------------------------c--------cCcc---ce-e-----------ee------------
Q 001628 546 -----------------------------------K--------KGNS---HI-I-----------HS------------ 555 (1042)
Q Consensus 546 -----------------------------------~--------~g~~---~~-~-----------~~------------ 555 (1042)
+ .|.. .. . |+
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 0 0000 00 0 00
Q ss_pred --EEEeecCCCeEEEEEecCCcEEEEEecCC-----cEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEE
Q 001628 556 --VKVMKINGSIISLNMNRNSQHLAVGSDQG-----YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFL 628 (1042)
Q Consensus 556 --~~~~~~~~~V~~l~~spdg~~La~gs~dg-----~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L 628 (1042)
-.+-+|...|.+++.+|+++++|++.... .|++|+..+..... ...+|+-.|+.|+||| |+.+|
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSp------dg~~L 587 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSP------DGRYL 587 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEEEEEEECC------CCcEE
Confidence 12336778899999999999999997654 58999987755431 1223555999999999 99999
Q ss_pred EEEeCCceEEEEECCCCceee-eeecCCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEecC
Q 001628 629 VIATKDSSVLVLDSDNGNMLS-TNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEK 707 (1042)
Q Consensus 629 ~s~s~Dg~V~vwd~~tg~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~~~ 707 (1042)
++.+.|.++.+|....+..-. .+.. .+....++-- -.+.+++.++++++.+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWd---------------------------csW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWD---------------------------CSWSPDEKYFATASRD 639 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhcc-ccccceEEEE---------------------------cccCcccceeEEecCC
Confidence 999999999999864322110 0100 0000000000 0233455667777755
Q ss_pred -ceEEEecCccccccceeEEE---eeec--CcCeeeEEEEEecCceEEEEEEecCeEEEEcCC
Q 001628 708 -AACAYSLSHAVQGVKKVLYK---KKFH--SSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 764 (1042)
Q Consensus 708 -~i~i~~~~~~~qg~~k~~~~---~~~~--~~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp 764 (1042)
.+.+|..+... .+.+-+ .++. .....+..++.......+++++..|.|.+|+++
T Consensus 640 K~VkVW~~~~~~---d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 640 KKVKVWEEPDLR---DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEeccCch---hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 69999987620 122212 1111 111122222222444467888999999999988
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1e-24 Score=223.90 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=223.1
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
...+..|.+.+..+.|-++...|++|+.|..|++|++......+... ..+..++|+++.|.+ ++.+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t------------LaGs~g~it~~d~d~--~~~~ 233 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST------------LAGSLGNITSIDFDS--DNKH 233 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh------------hhccCCCcceeeecC--CCce
Confidence 45667799999999999999999999999999999998776222111 223357899999999 8999
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 273 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~ 273 (1042)
+++++.|+.+++|++++.+ ...++.+|...|+++.|. .....+++|+.|.+|+.||+......++....
T Consensus 234 ~iAas~d~~~r~Wnvd~~r--------~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-- 302 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLR--------LRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-- 302 (459)
T ss_pred EEeecCCCceeeeeccchh--------hhhhhcccccceeeehhh-ccccceeeccccchhhhhhhhhhheecccccc--
Confidence 9999999999999999855 455678999999999997 66666999999999999999863100000000
Q ss_pred ccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC
Q 001628 274 ITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS 353 (1042)
Q Consensus 274 ~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (1042)
T Consensus 303 -------------------------------------------------------------------------------- 302 (459)
T KOG0288|consen 303 -------------------------------------------------------------------------------- 302 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 354 SDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 354 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
.. ..| |
T Consensus 303 --------------S~-----cnD---------------------------------I---------------------- 308 (459)
T KOG0288|consen 303 --------------SQ-----CND---------------------------------I---------------------- 308 (459)
T ss_pred --------------cc-----ccc---------------------------------e----------------------
Confidence 00 000 0
Q ss_pred hhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCE
Q 001628 434 LAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 513 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~ 513 (1042)
......+++|+.|+.||+||..+....... ..+ +.|+++..++++..
T Consensus 309 ----------------------~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv----------~~g-g~vtSl~ls~~g~~ 355 (459)
T KOG0288|consen 309 ----------------------VCSISDVISGHFDKKVRFWDIRSADKTRSV----------PLG-GRVTSLDLSMDGLE 355 (459)
T ss_pred ----------------------EecceeeeecccccceEEEeccCCceeeEe----------ecC-cceeeEeeccCCeE
Confidence 000126889999999999999877554222 334 59999999999999
Q ss_pred EEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 514 LVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 514 Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
|.+.+.|.++.+.++.+..... .+. ..+ ... ....+.+.|||++.|+|+|+.||.|+||++.+
T Consensus 356 lLsssRDdtl~viDlRt~eI~~--~~s--------A~g-----~k~--asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 356 LLSSSRDDTLKVIDLRTKEIRQ--TFS--------AEG-----FKC--ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred EeeecCCCceeeeecccccEEE--Eee--------ccc-----ccc--ccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 9999999999999998766533 110 000 111 14489999999999999999999999999999
Q ss_pred CeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEE
Q 001628 594 PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 640 (1042)
Q Consensus 594 ~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vw 640 (1042)
+++........ ....|++++|+| .|..|++++.++.+.+|
T Consensus 419 gKlE~~l~~s~-s~~aI~s~~W~~------sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 GKLEKVLSLST-SNAAITSLSWNP------SGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEeccCC-CCcceEEEEEcC------CCchhhcccCCcceEec
Confidence 98875444321 122799999999 99999999999999999
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-23 Score=200.48 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=218.4
Q ss_pred EecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q 001628 75 LESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQE 153 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~ 153 (1042)
+++| ..|++.+.|+.+|.+|.+++.|.++.||-..+++ +.+..+|.+.|+|++.+-+.++|++|+.|.++++||+.++
T Consensus 6 l~GH-ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 6 LQGH-ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cccC-ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 3444 4799999999999999999999999999886666 8899999999999999999999999999999999999998
Q ss_pred ccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-----CCeEEEEeccCCeeEEEeCCcc-cccccc
Q 001628 154 SSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-----DGLISLWDIRESKSIFSMGGNV-LQSVYH 227 (1042)
Q Consensus 154 ~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-----dg~I~vWd~~~~~~~~~~~g~~-~~~~~~ 227 (1042)
++ +.... ...+|..+.|++ ++++++.... .+.|.++|++....... .+. ......
T Consensus 85 k~-la~~k--------------~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI~t 145 (327)
T KOG0643|consen 85 KQ-LATWK--------------TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKIPT 145 (327)
T ss_pred cE-EEEee--------------cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEecC
Confidence 74 22221 145899999999 8887777764 46789999984321110 011 112245
Q ss_pred cCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEE
Q 001628 228 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLY 307 (1042)
Q Consensus 228 ~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~ 307 (1042)
+...++.+.|. |-+..|++|+.||.|.+||+.++....
T Consensus 146 ~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v----------------------------------------- 183 (327)
T KOG0643|consen 146 PDSKITSALWG-PLGETIIAGHEDGSISIYDARTGKELV----------------------------------------- 183 (327)
T ss_pred Cccceeeeeec-ccCCEEEEecCCCcEEEEEcccCceee-----------------------------------------
Confidence 66899999998 999999999999999999999741000
Q ss_pred EecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeecc
Q 001628 308 IMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQ 387 (1042)
Q Consensus 308 ~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~ 387 (1042)
+
T Consensus 184 ---------------------------------------------------------------------~---------- 184 (327)
T KOG0643|consen 184 ---------------------------------------------------------------------D---------- 184 (327)
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred CCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeC
Q 001628 388 YQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHS 467 (1042)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~ 467 (1042)
....|...|+.+. +++++.+++||+.
T Consensus 185 ---------------s~~~h~~~Ind~q---------------------------------------~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 185 ---------------SDEEHSSKINDLQ---------------------------------------FSRDRTYFITGSK 210 (327)
T ss_pred ---------------chhhhcccccccc---------------------------------------ccCCcceEEeccc
Confidence 0014455566665 4455669999999
Q ss_pred CCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeee-c--c
Q 001628 468 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF-T--G 544 (1042)
Q Consensus 468 Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~-~--~ 544 (1042)
|.+-++||..+-.+...| ....||++.+++|....++.|+.-----|=........-|..|..+ . +
T Consensus 211 Dttakl~D~~tl~v~Kty-----------~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 211 DTTAKLVDVRTLEVLKTY-----------TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred CccceeeeccceeeEEEe-----------eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 999999999876544333 2247999999999887777665432222222222111111111100 0 0
Q ss_pred cccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 545 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 545 ~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
+-+-++|+ +||.+++|+|+|+..++|++||.|+|.-...
T Consensus 280 igrvkGHF----------GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 280 IGRVKGHF----------GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hccccccc----------cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11125566 9999999999999999999999999975543
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=7.9e-24 Score=209.00 Aligned_cols=207 Identities=17% Similarity=0.303 Sum_probs=170.4
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-------------CC------eEEEEecCCCcceEEEEEecCCCEEE
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-------------NN------TQALLESSEAVSTKFLQFLENQGILL 96 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-------------g~------~~~~~~~~~~~~v~~l~fs~~~~~Lv 96 (1042)
-|.+.+.|.+|+|||.++|+|+.|..|+|+|.+ |+ ++.++- .+...|.+|.|+|....|+
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEE
Confidence 567789999999999999999999999999976 11 122222 2346899999999999999
Q ss_pred EEeCCCCEEEEEcCCCc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 97 NVTSTNLIEVWDIDKKR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 97 s~s~dg~I~vWd~~~~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
+++.|++|+++|..... -.....-..+|.++.|+|.|.+|++|++..++++||+.+-++-+ +... .
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-------sanP----d 257 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-------SANP----D 257 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee-------ecCc----c
Confidence 99999999999987644 12223344689999999999999999999999999999976411 1111 2
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCe
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
..|.+.|+++.+++ .++..++++.||.|++||--+++++..++. .+....|+++.|. .+|.++++.+.|..
T Consensus 258 ~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~------AH~gsevcSa~Ft-kn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGN------AHGGSEVCSAVFT-KNGKYILSSGKDST 328 (430)
T ss_pred cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHh------hcCCceeeeEEEc-cCCeEEeecCCcce
Confidence 34678999999999 899999999999999999999988877631 2346789999998 99999999999999
Q ss_pred EEEEeCCCcc
Q 001628 254 ILIWGVPSIL 263 (1042)
Q Consensus 254 I~iWd~~~~~ 263 (1042)
+++|.+.+++
T Consensus 329 vkLWEi~t~R 338 (430)
T KOG0640|consen 329 VKLWEISTGR 338 (430)
T ss_pred eeeeeecCCc
Confidence 9999999863
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=2.2e-23 Score=212.05 Aligned_cols=317 Identities=15% Similarity=0.200 Sum_probs=229.9
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC-CCCC
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT-AESK 192 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~-~d~~ 192 (1042)
......|+..|.++... ++++++|+-||.+++||...... . . ..+|.++|.+++|.-. ....
T Consensus 98 pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----~--~---------~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----K--T---------IVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred ccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE----E--E---------EecCCcceeeeEEEecCCccc
Confidence 34445588889887776 79999999999999999988652 1 1 2456788887776542 1234
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
.+++++.|.++++|.++.+.... +..+...+|...|.++... ++|..+++|+.|..|.||+..... ....+..
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~----~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~--~~~~E~~ 233 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKV----KALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDE--EDELESS 233 (423)
T ss_pred eEEEecCCceEEEEEecCchhhh----hHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCc--ccccccc
Confidence 69999999999999998866322 1233346999999999987 999999999999999999944310 0000000
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
.+.+-. .
T Consensus 234 s~~rrk-~------------------------------------------------------------------------ 240 (423)
T KOG0313|consen 234 SNRRRK-K------------------------------------------------------------------------ 240 (423)
T ss_pred chhhhh-h------------------------------------------------------------------------
Confidence 000000 0
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
+..-.......+...+.+|..+|..+.|++
T Consensus 241 ------------------------------------~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-------------- 270 (423)
T KOG0313|consen 241 ------------------------------------QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-------------- 270 (423)
T ss_pred ------------------------------------hhhhhcccccCceEEecccccceeeEEEcC--------------
Confidence 000000001122344558888888887554
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 512 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~ 512 (1042)
...+.+++.|.+|+.||+..+.+..- ...+.++++++++|...
T Consensus 271 --------------------------~~v~yS~SwDHTIk~WDletg~~~~~-----------~~~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 271 --------------------------ATVIYSVSWDHTIKVWDLETGGLKST-----------LTTNKSLNCISYSPLSK 313 (423)
T ss_pred --------------------------CCceEeecccceEEEEEeecccceee-----------eecCcceeEeecccccc
Confidence 23688999999999999998754311 12346899999999999
Q ss_pred EEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC-cEEEEEecCCcEEEEec
Q 001628 513 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 513 ~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg-~~La~gs~dg~V~vwD~ 591 (1042)
+||+|+.|..+++||...... .+....+.+|++.|.++.|+|.. ..|++|+.|+++++||+
T Consensus 314 Ll~~gssdr~irl~DPR~~~g------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDG------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred eeeecCCCCceeecCCCCCCC------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 999999999999999876432 22335567778999999999965 56899999999999999
Q ss_pred cCCe-EEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 592 EGPT-VLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 592 ~~~~-~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
++.. .+|..+ +|...|.++.|. .+.++++|+.|.+|+++..
T Consensus 376 RS~k~plydI~---~h~DKvl~vdW~-------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 376 RSTKAPLYDIA---GHNDKVLSVDWN-------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ccCCCcceeec---cCCceEEEEecc-------CCceEEeccCcceEEEecc
Confidence 9876 555444 246699999999 6999999999999999984
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=202.84 Aligned_cols=282 Identities=16% Similarity=0.221 Sum_probs=213.8
Q ss_pred EEEEecC-CCEEEEEe-------CCCCEEEEEcCCC-cee--eeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccC
Q 001628 85 FLQFLEN-QGILLNVT-------STNLIEVWDIDKK-RLS--HVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 85 ~l~fs~~-~~~Lvs~s-------~dg~I~vWd~~~~-~~~--~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~ 152 (1042)
+++|+|- .++|+++. ..|.+.|-++... .+. ......+.+..++|++.. +.+++++.||++++||+..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 3788882 22444433 3578999998643 343 344567889999999876 7888999999999999544
Q ss_pred CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCce
Q 001628 153 ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 153 ~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I 232 (1042)
.. .|... ...|...|.++.|++. +...+++++.|++|++|+..-...+.+ +.+|..-|
T Consensus 93 ~s-----~Pi~~--------~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~T--------f~gh~~~I 150 (311)
T KOG0277|consen 93 PS-----KPIHK--------FKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQT--------FNGHNSCI 150 (311)
T ss_pred CC-----cchhH--------HHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEe--------ecCCccEE
Confidence 32 11111 2446789999999996 788899999999999999998665555 58899999
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEeccc
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGAS 312 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~ 312 (1042)
....|++..++.|++++.||.+++||++...+ +
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-----------~------------------------------------ 183 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-----------F------------------------------------ 183 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCc-----------e------------------------------------
Confidence 99999966799999999999999999886200 0
Q ss_pred ccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCC
Q 001628 313 DFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRS 392 (1042)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~ 392 (1042)
T Consensus 184 -------------------------------------------------------------------------------- 183 (311)
T KOG0277|consen 184 -------------------------------------------------------------------------------- 183 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEE
Q 001628 393 PPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAIN 472 (1042)
Q Consensus 393 ~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~Ir 472 (1042)
+.++.|...|.|+.++. .+.++++||+.|+.||
T Consensus 184 ---------~~i~ah~~Eil~cdw~k--------------------------------------y~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 184 ---------MSIEAHNSEILCCDWSK--------------------------------------YNHNVLATGGVDNLVR 216 (311)
T ss_pred ---------eEEEeccceeEeecccc--------------------------------------cCCcEEEecCCCceEE
Confidence 01235555666666432 2346899999999999
Q ss_pred EEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccc
Q 001628 473 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 551 (1042)
Q Consensus 473 iWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~ 551 (1042)
.||+..-. .+++.| .+|+-.|..+.|+|.. .+||+++.|-++|||+........+ +. ..|
T Consensus 217 ~wDir~~r-~pl~eL--------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e-~~---------~~H 277 (311)
T KOG0277|consen 217 GWDIRNLR-TPLFEL--------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE-TV---------DHH 277 (311)
T ss_pred EEehhhcc-ccceee--------cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh-hh---------hcc
Confidence 99998643 455555 7999999999999976 7899999999999999975433221 11 233
Q ss_pred eeeeEEEeecCCCeEEEEEec-CCcEEEEEecCCcEEEEec
Q 001628 552 IIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 552 ~~~~~~~~~~~~~V~~l~~sp-dg~~La~gs~dg~V~vwD~ 591 (1042)
..-|..+.||+ +..++|..+.|+.++||+.
T Consensus 278 ----------tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 ----------TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----------ceEEeccccccccCceeeecccccceeeecc
Confidence 36789999998 5789999999999999984
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=6.9e-24 Score=203.55 Aligned_cols=203 Identities=21% Similarity=0.245 Sum_probs=171.0
Q ss_pred eeeecccCceEEEEEcC---CCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 32 VFHYGFPSGCNKFAYDP---LQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp---~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
+.-+||..+|..++|+| +|-+|.+++.||.-.+-+.+ |.-..+|.+|. ..|.......|..+-++++.|=+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk-gavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK-GAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC-cceeeeecCchhhhhhhhcccchhhhh
Confidence 45689999999999985 67899999999987776665 56788899887 668778888888788999999999999
Q ss_pred EcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p 187 (1042)
|.-++.......|..-|.+++|+.|.++|++|+.+..++|||+...+.. |.. ...|.+.|..+.|.-
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap----p~E---------~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP----PKE---------ISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC----chh---------hcCCCCcceeEEEec
Confidence 9999997777889999999999999999999999999999999886521 111 234688999999998
Q ss_pred CCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
..+.++++..|++|++||.+++..+.. ..-..+|+++..+ ++|.+|.+++. +.|.+||..+
T Consensus 154 --eD~~iLSSadd~tVRLWD~rTgt~v~s---------L~~~s~VtSlEvs-~dG~ilTia~g-ssV~Fwdaks 214 (334)
T KOG0278|consen 154 --EDKCILSSADDKTVRLWDHRTGTEVQS---------LEFNSPVTSLEVS-QDGRILTIAYG-SSVKFWDAKS 214 (334)
T ss_pred --cCceEEeeccCCceEEEEeccCcEEEE---------EecCCCCcceeec-cCCCEEEEecC-ceeEEecccc
Confidence 778899999999999999999887765 3346789999998 89988777664 5899999886
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=7.8e-23 Score=198.05 Aligned_cols=280 Identities=14% Similarity=0.242 Sum_probs=215.4
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
..+.+|...|.+++|+.+|..|++|+.|+++.+|+++.... . ..+. ..+|.+.|..++|+|. .++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~-----~~~~-----~~gh~~svdql~w~~~-~~d~~ 80 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--R-----KELV-----YRGHTDSVDQLCWDPK-HPDLF 80 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh--h-----hhhc-----ccCCCcchhhheeCCC-CCcce
Confidence 34567889999999999999999999999999999988641 1 1011 2346779999999996 88999
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccc
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQI 274 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~ 274 (1042)
++++.|..|++||+++++++... ...... .-++|+ |+|.+++++..|..|.+.|.++..
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i--------~~~~en-i~i~ws-p~g~~~~~~~kdD~it~id~r~~~----------- 139 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI--------ETKGEN-INITWS-PDGEYIAVGNKDDRITFIDARTYK----------- 139 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe--------eccCcc-eEEEEc-CCCCEEEEecCcccEEEEEecccc-----------
Confidence 99999999999999999877663 222233 356787 999999999999999999988620
Q ss_pred cccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCC
Q 001628 275 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSS 354 (1042)
Q Consensus 275 ~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (1042)
+....+ ..
T Consensus 140 -~~~~~~--------------~~--------------------------------------------------------- 147 (313)
T KOG1407|consen 140 -IVNEEQ--------------FK--------------------------------------------------------- 147 (313)
T ss_pred -eeehhc--------------cc---------------------------------------------------------
Confidence 000000 00
Q ss_pred CCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhh
Q 001628 355 DPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLL 434 (1042)
Q Consensus 355 ~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~ 434 (1042)
+. +.-+.
T Consensus 148 ---------------------~e---------------------------------~ne~~------------------- 154 (313)
T KOG1407|consen 148 ---------------------FE---------------------------------VNEIS------------------- 154 (313)
T ss_pred ---------------------ce---------------------------------eeeee-------------------
Confidence 00 00000
Q ss_pred hhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEE
Q 001628 435 AKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 514 (1042)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~L 514 (1042)
++.++++++.....|.|.|-... .+.+++.+ ..|.....||.|+|+|++|
T Consensus 155 --------------------w~~~nd~Fflt~GlG~v~ILsyp--sLkpv~si--------~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 155 --------------------WNNSNDLFFLTNGLGCVEILSYP--SLKPVQSI--------KAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred --------------------ecCCCCEEEEecCCceEEEEecc--cccccccc--------ccCCcceEEEEECCCCceE
Confidence 22233466666677888887665 66666665 7899999999999999999
Q ss_pred EEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCC
Q 001628 515 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 594 (1042)
Q Consensus 515 asg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~ 594 (1042)
|+|+.|..|-+||++...... .+ ..+ .-+|..|.||.||++||+|++|..|-|=+++++
T Consensus 205 A~GsADAlvSLWD~~ELiC~R--~i---------sRl----------dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 205 ATGSADALVSLWDVDELICER--CI---------SRL----------DWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred eeccccceeeccChhHhhhhe--ee---------ccc----------cCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999999999998644422 33 233 489999999999999999999999999999999
Q ss_pred eEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCC
Q 001628 595 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 634 (1042)
Q Consensus 595 ~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~D 634 (1042)
..++..++. ++-..++|.| ...+|+-+..|
T Consensus 264 d~~~eI~~~----~~t~tVAWHP------k~~LLAyA~dd 293 (313)
T KOG1407|consen 264 DRVWEIPCE----GPTFTVAWHP------KRPLLAYACDD 293 (313)
T ss_pred CeEEEeecc----CCceeEEecC------CCceeeEEecC
Confidence 998887754 4899999999 88899888866
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=6.1e-24 Score=203.92 Aligned_cols=283 Identities=14% Similarity=0.180 Sum_probs=223.6
Q ss_pred CCcceEEEEEec---CCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc
Q 001628 79 EAVSTKFLQFLE---NQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQES 154 (1042)
Q Consensus 79 ~~~~v~~l~fs~---~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~ 154 (1042)
+..||..|.|+| +|-+|++++.|+.=.+-+-+++. +.++.+|.+.|+...+..+....+++..|-+-++||.-++.
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd 92 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD 92 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh
Confidence 347888899986 78899999999999998999998 89999999999999999999999999999999999987765
Q ss_pred cceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeE
Q 001628 155 SQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTS 234 (1042)
Q Consensus 155 ~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~ 234 (1042)
. +. ...|+.-|.+++|+. |.++|++|+.+..++|+|++..+ ..+....+|...|..
T Consensus 93 e-lh--------------sf~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 93 E-LH--------------SFEHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRT 148 (334)
T ss_pred h-hh--------------hhhhhheeeeEEecc--cchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCccee
Confidence 2 10 233566899999998 99999999999999999998755 334556889999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEeccccc
Q 001628 235 ACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDF 314 (1042)
Q Consensus 235 l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~ 314 (1042)
+.|- .....|++...|++|++||..++... .++
T Consensus 149 v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v--------------------------~sL-------------------- 181 (334)
T KOG0278|consen 149 VLWC-HEDKCILSSADDKTVRLWDHRTGTEV--------------------------QSL-------------------- 181 (334)
T ss_pred EEEe-ccCceEEeeccCCceEEEEeccCcEE--------------------------EEE--------------------
Confidence 9995 78888888899999999999985100 000
Q ss_pred CCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCC
Q 001628 315 VSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPP 394 (1042)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~ 394 (1042)
T Consensus 182 -------------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 182 -------------------------------------------------------------------------------- 181 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEE
Q 001628 395 SAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFW 474 (1042)
Q Consensus 395 ~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriW 474 (1042)
...++|+++- .+++++++.++ ..++|.+|
T Consensus 182 -----------~~~s~VtSlE---------------------------------------vs~dG~ilTia-~gssV~Fw 210 (334)
T KOG0278|consen 182 -----------EFNSPVTSLE---------------------------------------VSQDGRILTIA-YGSSVKFW 210 (334)
T ss_pred -----------ecCCCCccee---------------------------------------eccCCCEEEEe-cCceeEEe
Confidence 0011222233 33444455554 45679999
Q ss_pred eCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceee
Q 001628 475 DVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH 554 (1042)
Q Consensus 475 d~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 554 (1042)
|..+-.+..-+.+ ...|.+.+++|+...+++|++|+.++.||+.+..... .+. ++|+
T Consensus 211 daksf~~lKs~k~-----------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~--~~n--------kgh~-- 267 (334)
T KOG0278|consen 211 DAKSFGLLKSYKM-----------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG--SYN--------KGHF-- 267 (334)
T ss_pred ccccccceeeccC-----------ccccccccccCCCceEEecCcceEEEEEeccCCceee--ecc--------cCCC--
Confidence 9986543322322 3678899999999999999999999999998765533 222 4666
Q ss_pred eEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCC
Q 001628 555 SVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 594 (1042)
Q Consensus 555 ~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~ 594 (1042)
++|.|+.|+|||...|+|++||+|+||.+.-+
T Consensus 268 --------gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 268 --------GPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred --------CceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 99999999999999999999999999998643
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=8.3e-24 Score=209.59 Aligned_cols=296 Identities=17% Similarity=0.227 Sum_probs=231.3
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF 198 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~ 198 (1042)
+....+.|..|+||++||++|+-||.|-+||+.++++.. .+.|.. ......++.+|.|+.|+. |...+++|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-DLkYQA-----qd~fMMmd~aVlci~FSR--DsEMlAsGs 282 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-DLKYQA-----QDNFMMMDDAVLCISFSR--DSEMLASGS 282 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-hhhhhh-----hcceeecccceEEEeecc--cHHHhhccC
Confidence 345678899999999999999999999999999887321 122221 112345678999999999 999999999
Q ss_pred CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccc
Q 001628 199 RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPIC 278 (1042)
Q Consensus 199 ~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~ 278 (1042)
.||.|++|.+.+|.++++|. ..|...|+|+.|+ .|++.+++++.|.++++..+.++..+
T Consensus 283 qDGkIKvWri~tG~ClRrFd-------rAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~L------------- 341 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFD-------RAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCL------------- 341 (508)
T ss_pred cCCcEEEEEEecchHHHHhh-------hhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhH-------------
Confidence 99999999999999887763 5799999999998 99999999999999999988875100
Q ss_pred cccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCC
Q 001628 279 KLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNK 358 (1042)
Q Consensus 279 ~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 358 (1042)
T Consensus 342 -------------------------------------------------------------------------------- 341 (508)
T KOG0275|consen 342 -------------------------------------------------------------------------------- 341 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcC
Q 001628 359 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSV 438 (1042)
Q Consensus 359 ~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~ 438 (1042)
....+|.+.|+.+.|
T Consensus 342 -------------------------------------------KEfrGHsSyvn~a~f---------------------- 356 (508)
T KOG0275|consen 342 -------------------------------------------KEFRGHSSYVNEATF---------------------- 356 (508)
T ss_pred -------------------------------------------HHhcCccccccceEE----------------------
Confidence 012366666666664
Q ss_pred CCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEE
Q 001628 439 PPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSG 517 (1042)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg 517 (1042)
.++|+.+++++.||+|++|+..+..+...++. .+...+|.++..-|.+ ..++++
T Consensus 357 -----------------t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~--------~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 357 -----------------TDDGHHIISASSDGTVKVWHGKTTECLSTFKP--------LGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred -----------------cCCCCeEEEecCCccEEEecCcchhhhhhccC--------CCCcccceeEEEcCCCCceEEEE
Confidence 45555899999999999999988766544432 3455788888887765 688899
Q ss_pred eccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE
Q 001628 518 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 597 (1042)
Q Consensus 518 ~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~ 597 (1042)
....+|.|.++.+.-. ..++..+++. +...+.+.||.|.++.+.++|+.++-+.+.++.+-
T Consensus 412 Nrsntv~imn~qGQvV------rsfsSGkREg-------------GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVV------RSFSSGKREG-------------GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred cCCCeEEEEeccceEE------eeeccCCccC-------------CceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 9999999999876433 2222222221 45566778999999999999999999999988874
Q ss_pred EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE
Q 001628 598 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 641 (1042)
Q Consensus 598 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd 641 (1042)
+....|...|..++-.| ..+.|++-++||.+++|.
T Consensus 473 ---~tl~VhEkdvIGl~HHP------HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 473 ---RTLPVHEKDVIGLTHHP------HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ---eeeecccccccccccCc------ccchhhhhcccchhhhcC
Confidence 33333455888999998 899999999999999996
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9e-23 Score=214.55 Aligned_cols=283 Identities=16% Similarity=0.244 Sum_probs=215.6
Q ss_pred CCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccce
Q 001628 79 EAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQI 157 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~ 157 (1042)
...+|.+|+|+|...+=++....-.+.+++..+.. ...+..+...|.++.|..||++|+.|++.|.|+|||..+... +
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-L 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI-L 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH-H
Confidence 34689999999976654444455689999998887 455777889999999999999999999999999999655321 1
Q ss_pred eeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEE
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACW 237 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~ 237 (1042)
.. ...|..+|..+.|+|. ++..+++|+.|+.+++||+.+...+.. ..+|...|.|.+|
T Consensus 104 R~-------------~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~--------l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQ-------------LYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAE--------LSGHTDYVRCGDI 161 (487)
T ss_pred HH-------------HhhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEE--------ecCCcceeEeecc
Confidence 11 2346789999999996 778888999999999999999875433 4889999999999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCC
Q 001628 238 ACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSM 317 (1042)
Q Consensus 238 ~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~ 317 (1042)
++.++..+++|+.||.|++||++... .|. +
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~-------------------------------~~v---------~---------- 191 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT-------------------------------SRV---------V---------- 191 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC-------------------------------cee---------E----------
Confidence 96677899999999999999998620 000 0
Q ss_pred ccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCC
Q 001628 318 NLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAP 397 (1042)
Q Consensus 318 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~ 397 (1042)
-+
T Consensus 192 ---------------------------------------------------------el--------------------- 193 (487)
T KOG0310|consen 192 ---------------------------------------------------------EL--------------------- 193 (487)
T ss_pred ---------------------------------------------------------Ee---------------------
Confidence 00
Q ss_pred ccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCC
Q 001628 398 KEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVS 477 (1042)
Q Consensus 398 ~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~ 477 (1042)
.|..+|..+.|.|. +.++++++.+ .|++||+.
T Consensus 194 --------nhg~pVe~vl~lps---------------------------------------gs~iasAgGn-~vkVWDl~ 225 (487)
T KOG0310|consen 194 --------NHGCPVESVLALPS---------------------------------------GSLIASAGGN-SVKVWDLT 225 (487)
T ss_pred --------cCCCceeeEEEcCC---------------------------------------CCEEEEcCCC-eEEEEEec
Confidence 23333444443333 3367776654 69999999
Q ss_pred CCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEE
Q 001628 478 CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 557 (1042)
Q Consensus 478 ~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 557 (1042)
++... +..+ ..|...|||+.+..++..|++|+-||.|++|++...+... ++ .-
T Consensus 226 ~G~ql-l~~~--------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~--s~----------~~------ 278 (487)
T KOG0310|consen 226 TGGQL-LTSM--------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH--SW----------KY------ 278 (487)
T ss_pred CCcee-hhhh--------hcccceEEEEEeecCCceEeecccccceEEEEccceEEEE--ee----------ec------
Confidence 65322 1211 3488999999999999999999999999999977655533 12 11
Q ss_pred EeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 558 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 558 ~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
+++|.+|+.+|++..+++|..||.+.+-+.
T Consensus 279 ----~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 279 ----PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ----ccceeeEEecCCCceEEEecccceeeeehh
Confidence 389999999999999999999999877643
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=4e-22 Score=193.66 Aligned_cols=211 Identities=14% Similarity=0.199 Sum_probs=179.4
Q ss_pred eeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEec-CCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc
Q 001628 31 LVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGR-HNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 31 ~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~-~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~ 109 (1042)
.+...||..+++.+.|..+|.+|-+++.|..+.||-. +|....++.+|. ..|.++....+.++|++|+.|+++++||+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt-GavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT-GAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC-ceEEEEEecCCcceeeeccccceeEEEEc
Confidence 3556789999999999999999999999999999976 677888888888 77888999999999999999999999999
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEccCCccce-eeee-eecccccccCccccCCCCEEE
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT-----AGKISVLKLDQESSQI-VKMK-YIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-----dG~I~vwd~~~~~~~~-~~~~-~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
.+++.......+..|..+.|++++++++..++ .+.|.++|+....... ...| +.+ ..+...++.
T Consensus 82 ~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI---------~t~~skit~ 152 (327)
T KOG0643|consen 82 ETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI---------PTPDSKITS 152 (327)
T ss_pred CCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe---------cCCccceee
Confidence 99998888889999999999999999887765 4689999988543101 1111 122 234568999
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+.|.| -+..|++|.+||.|..||++++..... ....|...|+.++++ ++..+|++++.|.+-++||+.+
T Consensus 153 a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~-------s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 153 ALWGP--LGETIIAGHEDGSISIYDARTGKELVD-------SDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred eeecc--cCCEEEEecCCCcEEEEEcccCceeee-------chhhhcccccccccc-CCcceEEecccCccceeeeccc
Confidence 99999 799999999999999999999764332 336788899999998 9999999999999999999987
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=211.77 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=160.1
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-e
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-L 114 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~ 114 (1042)
.-+..|++++|+|...+=.+.+..-++.||+..+.........-+..|.++.|-.||+.|++|+..|.|+|+|..++. +
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 345789999999977654444445779999987322111122334678889999999999999999999999966655 7
Q ss_pred eeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 115 SHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
..+..|+.+|..+.|+|.+ ..+++|++|+.+++||+.+... + +. ...|...|.|.+|+|. ++..
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~--~~---------l~~htDYVR~g~~~~~-~~hi 168 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---Q--AE---------LSGHTDYVRCGDISPA-NDHI 168 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---E--EE---------ecCCcceeEeeccccC-CCeE
Confidence 7889999999999999987 4566788889999999998752 1 11 2456889999999995 7778
Q ss_pred EEEEECCCeEEEEeccCC-eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 194 ILIIFRDGLISLWDIRES-KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~-~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+++|+.||.|++||.+.. ..+.. ..|..+|.++++. |.|..|++++.+ .+++||+.+|
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~e---------lnhg~pVe~vl~l-psgs~iasAgGn-~vkVWDl~~G 227 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVE---------LNHGCPVESVLAL-PSGSLIASAGGN-SVKVWDLTTG 227 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEE---------ecCCCceeeEEEc-CCCCEEEEcCCC-eEEEEEecCC
Confidence 999999999999999986 44444 5688999999999 999999998876 7999999864
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=212.30 Aligned_cols=210 Identities=16% Similarity=0.153 Sum_probs=164.9
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeE------EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEE
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQ------ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWD 108 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~------~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd 108 (1042)
-|+...|++++++|.|-.+++|+.|.+|++||..| .. ..+......+|..++|++.+..|++++.....+|+|
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~g-Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQG-MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccc-ccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 35567799999999999999999999999999984 22 223344457899999999999999999999999999
Q ss_pred cCCCc-------------eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccc
Q 001628 109 IDKKR-------------LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEV 174 (1042)
Q Consensus 109 ~~~~~-------------~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~ 174 (1042)
-+..+ +....+|...++|.+|+|.. ..+++++.||++++|++....-.+...... . ..
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k---~-----~~ 314 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK---P-----AG 314 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec---c-----CC
Confidence 87654 23456788999999999987 677899999999999998765212111111 0 11
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC--ceeEEEEEccCCCEEEEEecCC
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK--QVTSACWACPIGSKVAVGYSNG 252 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~--~I~~l~~~~~~g~~l~sg~~dG 252 (1042)
....+++.++|+| +++.++.|+.||.|.+|+...... . ........|.. .|+|+.|+ ++|++|++-+.|+
T Consensus 315 g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v-~----p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 315 GKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTV-R----PVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDD 386 (641)
T ss_pred CcccCceeeecCC--CcchhhhcccCCceeeeecCCccc-c----cceEeeeccCCCCceeEEEec-cccchhhhccCCC
Confidence 2346899999999 999999999999999999754211 0 11112245655 99999998 9999999999999
Q ss_pred eEEEEeCCC
Q 001628 253 EILIWGVPS 261 (1042)
Q Consensus 253 ~I~iWd~~~ 261 (1042)
++++||++.
T Consensus 387 tLKvWDLrq 395 (641)
T KOG0772|consen 387 TLKVWDLRQ 395 (641)
T ss_pred ceeeeeccc
Confidence 999999986
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.2e-22 Score=225.96 Aligned_cols=271 Identities=15% Similarity=0.241 Sum_probs=197.2
Q ss_pred eee-ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeee----------------------------------
Q 001628 116 HVH-VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKM---------------------------------- 160 (1042)
Q Consensus 116 ~~~-~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~---------------------------------- 160 (1042)
.+. .|.+.|+++.|++||+|||+|++||.|+||.+..........
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 799999999999999999999999999999986611000000
Q ss_pred -----ee-ecccc-----c-ccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccccc
Q 001628 161 -----KY-IIPLS-----A-SHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHE 228 (1042)
Q Consensus 161 -----~~-~ip~~-----~-~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~ 228 (1042)
+. .+|.. . ......+|.+.|..+.|+ ..++|++++.|.+|+||++....+++. ..|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~---------F~H 408 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV---------FSH 408 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE---------Eec
Confidence 00 00000 0 000035678899999999 688999999999999999999999887 579
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEE
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 308 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~ 308 (1042)
..-|+|++|++-|.++|++|+-||.|+||++.+.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---------------------------------------------- 442 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---------------------------------------------- 442 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcC----------------------------------------------
Confidence 9999999999778999999999999999999862
Q ss_pred ecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccC
Q 001628 309 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 388 (1042)
Q Consensus 309 ~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~ 388 (1042)
++..|.
T Consensus 443 ---------------------------------------------------------------~Vv~W~----------- 448 (712)
T KOG0283|consen 443 ---------------------------------------------------------------KVVDWN----------- 448 (712)
T ss_pred ---------------------------------------------------------------eeEeeh-----------
Confidence 122333
Q ss_pred CCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 389 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
-...-||+++|.|+|+ ..+.|+.+
T Consensus 449 -----------------Dl~~lITAvcy~PdGk---------------------------------------~avIGt~~ 472 (712)
T KOG0283|consen 449 -----------------DLRDLITAVCYSPDGK---------------------------------------GAVIGTFN 472 (712)
T ss_pred -----------------hhhhhheeEEeccCCc---------------------------------------eEEEEEec
Confidence 1123577777655544 88999999
Q ss_pred CcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCcccccceeeeccccc
Q 001628 469 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKK 547 (1042)
Q Consensus 469 g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~ 547 (1042)
|.++||+.....+..-..+.....+. ..| ..||.+.|.|.. ..+.+.+.|..||||+.....+.. .|
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk-~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~--Kf-------- 540 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKK-KQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH--KF-------- 540 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCcc-ccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh--hh--------
Confidence 99999999987665544443221221 123 389999999765 457778999999999996554432 22
Q ss_pred CccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCe
Q 001628 548 GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 595 (1042)
Q Consensus 548 g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~ 595 (1042)
++.. . ...=....|+.||++|++|++|..|+||+.....
T Consensus 541 -KG~~-------n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 541 -KGFR-------N-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -cccc-------c-CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 1111 0 0233456788999999999999999999986543
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-22 Score=193.29 Aligned_cols=287 Identities=15% Similarity=0.231 Sum_probs=212.7
Q ss_pred EEEEEeCCC-CEEEEEe-------CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 125 TSFTIMQHS-NYMLLGD-------TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 125 t~v~~sp~~-~~l~sg~-------~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
.++.|||-- ++|++++ .+|.+.|.++..... +.... . ..-...+..++|++. ..+.+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-i~e~~-s----------~d~~D~LfdV~Wse~-~e~~~~~ 78 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-IQECQ-S----------YDTEDGLFDVAWSEN-HENQVIA 78 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-eEEEE-e----------eecccceeEeeecCC-CcceEEE
Confidence 577888864 5666554 378999999964331 11111 0 112468899999996 6788999
Q ss_pred EECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccc
Q 001628 197 IFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITP 276 (1042)
Q Consensus 197 ~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p 276 (1042)
++.||++++||..... +.++.+..|..+|.++.|...++..+++++-||+|++|+...+..
T Consensus 79 a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S------------ 139 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS------------ 139 (311)
T ss_pred EecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc------------
Confidence 9999999999955432 456777999999999999967788999999999999999875310
Q ss_pred cccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCC
Q 001628 277 ICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDP 356 (1042)
Q Consensus 277 ~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 356 (1042)
T Consensus 140 -------------------------------------------------------------------------------- 139 (311)
T KOG0277|consen 140 -------------------------------------------------------------------------------- 139 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhh
Q 001628 357 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAK 436 (1042)
Q Consensus 357 ~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~ 436 (1042)
|..+ .+|.+.|..++|+|-.
T Consensus 140 ----------------v~Tf----------------------------~gh~~~Iy~a~~sp~~---------------- 159 (311)
T KOG0277|consen 140 ----------------VQTF----------------------------NGHNSCIYQAAFSPHI---------------- 159 (311)
T ss_pred ----------------eEee----------------------------cCCccEEEEEecCCCC----------------
Confidence 0011 1444455555544332
Q ss_pred cCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCC-CCEEE
Q 001628 437 SVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SRVLV 515 (1042)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~-~~~La 515 (1042)
.+++++++.||+++|||+..+-.... +..|...|.++.|+.- ...|+
T Consensus 160 ----------------------~nlfas~Sgd~~l~lwdvr~~gk~~~----------i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 160 ----------------------PNLFASASGDGTLRLWDVRSPGKFMS----------IEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred ----------------------CCeEEEccCCceEEEEEecCCCceeE----------EEeccceeEeecccccCCcEEE
Confidence 35899999999999999886532222 2688899999999985 47899
Q ss_pred EEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC-CcEEEEEecCCcEEEEeccCC
Q 001628 516 SGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGP 594 (1042)
Q Consensus 516 sg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd-g~~La~gs~dg~V~vwD~~~~ 594 (1042)
+|+.|+.|+.||+.... .|. ..+.+|.-+|..+.|||. ...||+++.|=+++|||...+
T Consensus 208 Tg~vd~~vr~wDir~~r-----------------~pl---~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLR-----------------TPL---FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ecCCCceEEEEehhhcc-----------------ccc---eeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999999997532 232 556677799999999996 468999999999999999754
Q ss_pred eEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 595 TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 595 ~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
.-... ....|..-|..+.|++ .+..++++.+-|+.++||+.
T Consensus 268 ds~~e--~~~~HtEFv~g~Dws~-----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIE--TVDHHTEFVCGLDWSL-----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhh--hhhccceEEecccccc-----ccCceeeecccccceeeecc
Confidence 43211 1112555899999997 36889999999999999984
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=8.8e-22 Score=205.48 Aligned_cols=288 Identities=19% Similarity=0.293 Sum_probs=214.9
Q ss_pred EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCcee-----e-------------e-eecCCCeEEEEEeCCCC
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLS-----H-------------V-HVCKEEITSFTIMQHSN 134 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~-----~-------------~-~~h~~~It~v~~sp~~~ 134 (1042)
.....|..++++|.++|+..+.++++.+++|.=|++.++... . . ..|-..|.++++++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 334555688999999999999999999999999998776511 1 1 25778899999999999
Q ss_pred EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeE
Q 001628 135 YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSI 214 (1042)
Q Consensus 135 ~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~ 214 (1042)
||++|+.|..|.||+.++.+- .. . ...|.+.|.+++|.- ..+.+++++.|+.|++|+++...
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh--v~---~---------~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s-- 277 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH--VK---V---------FKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLS-- 277 (479)
T ss_pred EEEecCCCceEEEecCcccch--hh---c---------ccccccceeeeeeec--CccceeeeecCCceEEEehhHhH--
Confidence 999999999999999998751 11 1 245688999999997 78889999999999999999733
Q ss_pred EEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEE
Q 001628 215 FSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSL 294 (1042)
Q Consensus 215 ~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l 294 (1042)
.+.++.+|+..|.++.-. .-+..+.+|+.|+++++|++.+.
T Consensus 278 ------~vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~ee-------------------------------- 318 (479)
T KOG0299|consen 278 ------YVETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEE-------------------------------- 318 (479)
T ss_pred ------HHHHHhCCccceeeechh-cccceEEeccccceeEEEecccc--------------------------------
Confidence 345678999999999877 56777777779999999999752
Q ss_pred EEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceE
Q 001628 295 KWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFY 374 (1042)
Q Consensus 295 ~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~ 374 (1042)
..++
T Consensus 319 ---------sqli------------------------------------------------------------------- 322 (479)
T KOG0299|consen 319 ---------SQLI------------------------------------------------------------------- 322 (479)
T ss_pred ---------ceee-------------------------------------------------------------------
Confidence 0000
Q ss_pred EeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCcc
Q 001628 375 AFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS 454 (1042)
Q Consensus 375 ~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1042)
| ..+.+.+.|++|..+
T Consensus 323 -f----------------------------rg~~~sidcv~~In~----------------------------------- 338 (479)
T KOG0299|consen 323 -F----------------------------RGGEGSIDCVAFIND----------------------------------- 338 (479)
T ss_pred -e----------------------------eCCCCCeeeEEEecc-----------------------------------
Confidence 0 133445566665543
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccC--CCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDF--SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~--~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
..+++|+.||.|.+|++.......+..+-....... ..+...|++|+..|...++|+|+.+|.|++|.+..+.
T Consensus 339 -----~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 339 -----EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred -----cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 258999999999999998664433333321111110 1122489999999999999999999999999998763
Q ss_pred cccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEe
Q 001628 533 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS 581 (1042)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs 581 (1042)
... +++ .-....+-|++|+|+++|+++++|-
T Consensus 414 r~i--~~l----------------~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 414 RAI--NLL----------------YSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccc--cee----------------eecccccEEEEEEEccCCCEEEEec
Confidence 322 111 0011248899999999999877774
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.7e-22 Score=218.45 Aligned_cols=278 Identities=17% Similarity=0.291 Sum_probs=212.8
Q ss_pred eEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeec-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeee
Q 001628 83 TKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVC-KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMK 161 (1042)
Q Consensus 83 v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h-~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~ 161 (1042)
..-+.|+..+ +++++....|++|+..++.+..+... ...|+++.|+++|.+|++|..+|.|.|||...... ..
T Consensus 180 ~nlldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~--- 253 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TR--- 253 (484)
T ss_pred hhHhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cc---
Confidence 3336788555 55555668899999999996665544 88999999999999999999999999999887652 10
Q ss_pred eecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC
Q 001628 162 YIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI 241 (1042)
Q Consensus 162 ~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~ 241 (1042)
.+ ...|...|-+++|+ ...+.+|+.|+.|..+|++..+.... .+.+|...|+.+.|+ +|
T Consensus 254 -~~--------~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~qeVCgLkws-~d 312 (484)
T KOG0305|consen 254 -TL--------RGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHRQEVCGLKWS-PD 312 (484)
T ss_pred -cc--------cCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-------hhhcccceeeeeEEC-CC
Confidence 11 12267899999997 46799999999999999998663322 358899999999997 99
Q ss_pred CCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEE
Q 001628 242 GSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQ 321 (1042)
Q Consensus 242 g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~ 321 (1042)
+.++++|+.|+.+.|||.... .|.
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~------------~p~-------------------------------------------- 336 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSP------------EPK-------------------------------------------- 336 (484)
T ss_pred CCeeccCCCccceEeccCCCc------------ccc--------------------------------------------
Confidence 999999999999999998542 010
Q ss_pred EEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccce
Q 001628 322 IVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVM 401 (1042)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~ 401 (1042)
T Consensus 337 -------------------------------------------------------------------------------- 336 (484)
T KOG0305|consen 337 -------------------------------------------------------------------------------- 336 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEE--eCCCcEEEEeCCCC
Q 001628 402 LKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITG--HSDGAINFWDVSCP 479 (1042)
Q Consensus 402 ~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg--~~Dg~IriWd~~~~ 479 (1042)
+..-.|...|.+++|+|-.. .+||+| +.|+.|+|||...+
T Consensus 337 ~~~~~H~aAVKA~awcP~q~--------------------------------------~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQS--------------------------------------GLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred EEEeccceeeeEeeeCCCcc--------------------------------------CceEEcCCCcccEEEEEEcCCC
Confidence 00114555555555543322 367776 57999999999987
Q ss_pred ceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEE--EeccceEEEEEeccCCcccccceeeecccccCccceeeeEE
Q 001628 480 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS--GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVK 557 (1042)
Q Consensus 480 ~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Las--g~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 557 (1042)
..... ...+..|++|.|++..+.|++ |..+..|.||++...... ..
T Consensus 379 ~~i~~-----------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------------------~~ 426 (484)
T KOG0305|consen 379 ARIDS-----------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------------------AE 426 (484)
T ss_pred cEecc-----------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---------------------ee
Confidence 54311 244689999999999988776 455789999999763332 33
Q ss_pred EeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 558 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 558 ~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
+.+|...|..+++||||..+++|+.|.++++|++-+
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 344559999999999999999999999999999865
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=3.9e-22 Score=197.13 Aligned_cols=312 Identities=13% Similarity=0.205 Sum_probs=224.1
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee-ecccccccCc-----cccCCCCEEEEEEcc
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY-IIPLSASHGN-----EVSGDPAVINILPQP 187 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~-~ip~~~~~~~-----~~~~~~~V~~v~~~p 187 (1042)
-..+..|.+++.+.+|++||.++++|+.|-.|+++|++..-.+. .+. .++.....+| .-.|...|+++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 56677899999999999999999999999999999988532100 110 1111111111 345678999999999
Q ss_pred CCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccccc
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKT 267 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~ 267 (1042)
....|++++.|++|+++|+.....-+ .........+|.++.|+ |.|.+|++|.....+++||+.+-
T Consensus 183 --re~ILiS~srD~tvKlFDfsK~saKr------A~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~----- 248 (430)
T KOG0640|consen 183 --RETILISGSRDNTVKLFDFSKTSAKR------AFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTY----- 248 (430)
T ss_pred --hhheEEeccCCCeEEEEecccHHHHH------HHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccce-----
Confidence 78899999999999999998633111 11123456799999998 99999999999999999999872
Q ss_pred ccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeE
Q 001628 268 EECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDM 347 (1042)
Q Consensus 268 ~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1042)
.|+
T Consensus 249 ----------------------------Qcf------------------------------------------------- 251 (430)
T KOG0640|consen 249 ----------------------------QCF------------------------------------------------- 251 (430)
T ss_pred ----------------------------eEe-------------------------------------------------
Confidence 000
Q ss_pred EEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccc
Q 001628 348 EIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA 427 (1042)
Q Consensus 348 ~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~ 427 (1042)
++. . .-..|...|+++.|++.+.
T Consensus 252 --vsa---------------------------------n----------------Pd~qht~ai~~V~Ys~t~~------ 274 (430)
T KOG0640|consen 252 --VSA---------------------------------N----------------PDDQHTGAITQVRYSSTGS------ 274 (430)
T ss_pred --eec---------------------------------C----------------cccccccceeEEEecCCcc------
Confidence 000 0 0126788899998665544
Q ss_pred hhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCC-CCCeEEEE
Q 001628 428 DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS-GIPLTALY 506 (1042)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~-~~~V~~l~ 506 (1042)
+++||+.||.|++||--++.+...+ . ..| +..|++..
T Consensus 275 ---------------------------------lYvTaSkDG~IklwDGVS~rCv~t~------~---~AH~gsevcSa~ 312 (430)
T KOG0640|consen 275 ---------------------------------LYVTASKDGAIKLWDGVSNRCVRTI------G---NAHGGSEVCSAV 312 (430)
T ss_pred ---------------------------------EEEEeccCCcEEeeccccHHHHHHH------H---hhcCCceeeeEE
Confidence 9999999999999996655443211 1 344 48899999
Q ss_pred EeCCCCEEEEEeccceEEEEEeccCCcccccceeeeccc-ccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEe-cCC
Q 001628 507 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS-KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS-DQG 584 (1042)
Q Consensus 507 fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs-~dg 584 (1042)
|..+++++.+.+.|..|++|.+.++....+ + ++. -.|.+ .--+...|+....++..-. ..+
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~--Y---tGAg~tgrq------------~~rtqAvFNhtEdyVl~pDEas~ 375 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEISTGRMLKE--Y---TGAGTTGRQ------------KHRTQAVFNHTEDYVLFPDEASN 375 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecCCceEEE--E---ecCCcccch------------hhhhhhhhcCccceEEccccccC
Confidence 999999999999999999999988765431 1 110 00001 1123345666666655544 356
Q ss_pred cEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 585 YVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 585 ~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
.+.-||.++...+ .-...+|.+.+..+.-|| .+.-.++++.|..+++|--
T Consensus 376 slcsWdaRtadr~--~l~slgHn~a~R~i~HSP------~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 376 SLCSWDARTADRV--ALLSLGHNGAVRWIVHSP------VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeccccchhhh--hhcccCCCCCceEEEeCC------CCCceeeecccceeeeeee
Confidence 7889999887654 223345788999999999 9999999999999999963
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=210.25 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=162.0
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCe---EEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNT---QALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDK 111 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~---~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~ 111 (1042)
.-|.+.+..+.|-+....||+|+.|-.|++|+..|.. ..++.+.. ++|+.+.|.+++.++++++.|+.+++||++.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 3456789999999999999999999999999988532 33343433 6899999999999999999999999999999
Q ss_pred Cc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC
Q 001628 112 KR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE 190 (1042)
Q Consensus 112 ~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d 190 (1042)
.+ ..++.+|.+.|+++.|......+++|+.|.+|+.||+....+....+ ....+..|..+
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------------~~S~cnDI~~~---- 311 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------------PGSQCNDIVCS---- 311 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------------ccccccceEec----
Confidence 88 78889999999999999888889999999999999999865321111 12344455554
Q ss_pred CCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 191 SKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 191 ~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
...+++|..|+.|++||+++....... .-.+.|+++..+ .+|..+.+.+.|.++.+.|+++
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv---------~~gg~vtSl~ls-~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSV---------PLGGRVTSLDLS-MDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEe---------ecCcceeeEeec-cCCeEEeeecCCCceeeeeccc
Confidence 345888999999999999997766653 234499999998 9999999999999999999987
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=199.87 Aligned_cols=285 Identities=17% Similarity=0.209 Sum_probs=225.1
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVK 159 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~ 159 (1042)
..++++...+....+++|+.|.++.++|...++ +..+.+|...|+.+.++++...+++++.|-.|+||.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--
Confidence 467778888876789999999999999999988 78889999999999999999999999999999999987765211
Q ss_pred eeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEc
Q 001628 160 MKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWAC 239 (1042)
Q Consensus 160 ~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~ 239 (1042)
. ...|..+|+.+..+| .+.|+++++.|+...+.|+++++.+.... .....-.+++++|+
T Consensus 298 ~------------~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~fH- 356 (506)
T KOG0289|consen 298 S------------SRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEYTSAAFH- 356 (506)
T ss_pred c------------cccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEe------eccccceeEEeeEc-
Confidence 1 244788999999999 89999999999999999999988765421 01234569999998
Q ss_pred cCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCcc
Q 001628 240 PIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNL 319 (1042)
Q Consensus 240 ~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~ 319 (1042)
|||..|.+|..||.|+|||+.++.
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~-------------------------------------------------------- 380 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQT-------------------------------------------------------- 380 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCcc--------------------------------------------------------
Confidence 999999999999999999998730
Q ss_pred EEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCcc
Q 001628 320 LQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKE 399 (1042)
Q Consensus 320 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~ 399 (1042)
T Consensus 381 -------------------------------------------------------------------------------- 380 (506)
T KOG0289|consen 381 -------------------------------------------------------------------------------- 380 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCC
Q 001628 400 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCP 479 (1042)
Q Consensus 400 ~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~ 479 (1042)
.....|+|.++|+.++|+.+ |-+|+++..|+.|++||+..-
T Consensus 381 ~~a~Fpght~~vk~i~FsEN---------------------------------------GY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSEN---------------------------------------GYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ccccCCCCCCceeEEEeccC---------------------------------------ceEEEEEecCCeEEEEEehhh
Confidence 00124689999999996544 448999999999999999866
Q ss_pred ceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEe
Q 001628 480 LFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVM 559 (1042)
Q Consensus 480 ~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 559 (1042)
...+.+.+ ....+|.+++|++.|.+|+.++.|=+|.+++-........ ..+.
T Consensus 422 ~n~kt~~l---------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~-------------------~~~~ 473 (506)
T KOG0289|consen 422 KNFKTIQL---------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI-------------------KELA 473 (506)
T ss_pred cccceeec---------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceee-------------------ehhh
Confidence 54433433 2224799999999999999997775555544333222110 1122
Q ss_pred ecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 560 KINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 560 ~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
.|.+..+++.|..+.+++++++.|..++++-+
T Consensus 474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeecccceEEeeccchhheEEeec
Confidence 33488999999999999999999999888753
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-20 Score=175.79 Aligned_cols=307 Identities=12% Similarity=0.136 Sum_probs=225.6
Q ss_pred EEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc------CCC-----c-----eeeeeecCCCeEEEEEeCCCCE
Q 001628 72 QALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI------DKK-----R-----LSHVHVCKEEITSFTIMQHSNY 135 (1042)
Q Consensus 72 ~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~------~~~-----~-----~~~~~~h~~~It~v~~sp~~~~ 135 (1042)
+.+-.......|.+++|+|.|+..+.|+...+++|.-. +.. . ....+.|.+.|.|.+|+|+|.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 33334455568999999999999999999999888643 211 1 1233458899999999999999
Q ss_pred EEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc--CCCCCeEEEEE-CCCeEEEEeccCCe
Q 001628 136 MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP--TAESKRILIIF-RDGLISLWDIRESK 212 (1042)
Q Consensus 136 l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p--~~d~~~lls~~-~dg~I~vWd~~~~~ 212 (1042)
|++|+.|.+|++..+....+........ ...|++.|..++|.- ...+..|++++ .|..|++-|...|+
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle---------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLE---------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCCCceEEEEecccccccccCccee---------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 9999999999998877654311110000 245789999999963 21244555554 46677777887755
Q ss_pred eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccce
Q 001628 213 SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPIS 292 (1042)
Q Consensus 213 ~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~ 292 (1042)
.++.+.+|.+.|.++ ++ -+|..|++|+.|.+|++||++-..
T Consensus 175 --------~~~a~sghtghilal-ys-wn~~m~~sgsqdktirfwdlrv~~----------------------------- 215 (350)
T KOG0641|consen 175 --------GFHALSGHTGHILAL-YS-WNGAMFASGSQDKTIRFWDLRVNS----------------------------- 215 (350)
T ss_pred --------cceeecCCcccEEEE-EE-ecCcEEEccCCCceEEEEeeeccc-----------------------------
Confidence 345568899999887 33 369999999999999999998520
Q ss_pred EEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCc
Q 001628 293 SLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGH 372 (1042)
Q Consensus 293 ~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~ 372 (1042)
+|-.+...
T Consensus 216 ----------------------------~v~~l~~~-------------------------------------------- 223 (350)
T KOG0641|consen 216 ----------------------------CVNTLDND-------------------------------------------- 223 (350)
T ss_pred ----------------------------eeeeccCc--------------------------------------------
Confidence 00000000
Q ss_pred eEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCC
Q 001628 373 FYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGS 452 (1042)
Q Consensus 373 l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1042)
+...+ ...+.|+.++
T Consensus 224 ---~~~~g-------------------------lessavaav~------------------------------------- 238 (350)
T KOG0641|consen 224 ---FHDGG-------------------------LESSAVAAVA------------------------------------- 238 (350)
T ss_pred ---ccCCC-------------------------cccceeEEEE-------------------------------------
Confidence 00000 1123344444
Q ss_pred ccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 453 QSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 453 ~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
..|.+++|++|+.|.+..+||+.++.+..-+ ..|...|.++.|+|...+|.+++.|..|++-++...
T Consensus 239 --vdpsgrll~sg~~dssc~lydirg~r~iq~f----------~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd- 305 (350)
T KOG0641|consen 239 --VDPSGRLLASGHADSSCMLYDIRGGRMIQRF----------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD- 305 (350)
T ss_pred --ECCCcceeeeccCCCceEEEEeeCCceeeee----------CCCccceeEEEeCCCceEEEEecccceEEEeecccc-
Confidence 5577789999999999999999998765444 789999999999999999999999999999998763
Q ss_pred cccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEecc
Q 001628 533 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~ 592 (1042)
..|.+|.+++-.|+..+..+.|.|..--+.+.+.|.++.+|-+.
T Consensus 306 ----------------la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 ----------------LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----------------hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 35566668888889999999999988888899999999999764
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=7.8e-21 Score=188.14 Aligned_cols=199 Identities=11% Similarity=0.161 Sum_probs=158.7
Q ss_pred cCceEEEEEcC-CCCEEEEEEcCCeEEEEecC--CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce
Q 001628 38 PSGCNKFAYDP-LQKILAAATKDGRIKLYGRH--NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL 114 (1042)
Q Consensus 38 ~~~v~~la~sp-~~~~LA~gs~dg~I~iw~~~--g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~ 114 (1042)
..+|++|+||| ...+|+.|+-||+||+|+.+ |.........+..||.+++|+.+|..+++++.|+.+++||+.++++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 36899999999 55677799999999999987 2344444455678999999999999999999999999999999999
Q ss_pred eeeeecCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 115 SHVHVCKEEITSFTIMQHSN--YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~--~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
..+..|.++|.++.|-+... .|++|+.|.+|+.||...... + ....+ +..|.++..- ..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v--~t~~L------------PeRvYa~Dv~----~p 167 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-V--ATLQL------------PERVYAADVL----YP 167 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-e--eeeec------------cceeeehhcc----Cc
Confidence 99999999999999998775 899999999999999987641 1 11111 3455555432 34
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.++++..+..|.+|+++.+..++.. ......-.+.|++.. .+.+..+.|+-.|.+.+-.+..+
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~------~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKR------IESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhh------hcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCC
Confidence 6889999999999999886644421 112235678888887 88888999999999999998863
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=204.69 Aligned_cols=285 Identities=16% Similarity=0.250 Sum_probs=218.2
Q ss_pred eecccCceEEEEEcCCC-CEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCC
Q 001628 34 HYGFPSGCNKFAYDPLQ-KILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDK 111 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~-~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~ 111 (1042)
..||...|.|+|=+|.+ ..+|+|+.||.|+|||... ....++..|. ..|..|++.. ..+++++.|.+|+.|-++.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE-GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc-CceeeEEecc--cceEEecCCcceeeeeccC
Confidence 37999999999999998 8999999999999999983 2345566655 7899999988 4599999999999999887
Q ss_pred CceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCC
Q 001628 112 KRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAES 191 (1042)
Q Consensus 112 ~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~ 191 (1042)
. +.....-.+.+..+.-+.....+++++++ |.|||.....- +..+. |. ...|.++.|+|. ..
T Consensus 139 ~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~P-v~sms------wG-------~Dti~svkfNpv-ET 200 (433)
T KOG0268|consen 139 P-PLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNP-VSSMS------WG-------ADSISSVKFNPV-ET 200 (433)
T ss_pred C-cceeeeccccccccccccccccccccCce--eeecccccCCc-cceee------cC-------CCceeEEecCCC-cc
Confidence 5 33333344567777777777888888775 99999876541 11111 22 257899999996 77
Q ss_pred CeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCC
Q 001628 192 KRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG 271 (1042)
Q Consensus 192 ~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~ 271 (1042)
..|+++..|+.|.|||++++.++... .-.-.-..+||+ |++-.|++|..|..++.+|++...
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KV---------i~~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~l~-------- 262 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKV---------ILTMRTNTICWN-PEAFNFVAANEDHNLYTYDMRNLS-------- 262 (433)
T ss_pred hheeeeccCCceEEEecccCCcccee---------eeeccccceecC-ccccceeeccccccceehhhhhhc--------
Confidence 88888889999999999998866542 223355678998 899999999999999999987520
Q ss_pred ccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEcc
Q 001628 272 TQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIIS 351 (1042)
Q Consensus 272 ~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1042)
.|
T Consensus 263 ---~p--------------------------------------------------------------------------- 264 (433)
T KOG0268|consen 263 ---RP--------------------------------------------------------------------------- 264 (433)
T ss_pred ---cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHH
Q 001628 352 SSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDY 431 (1042)
Q Consensus 352 ~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~ 431 (1042)
..++..|.+.|..+.|+|.|
T Consensus 265 -------------------------------------------------~~v~~dhvsAV~dVdfsptG----------- 284 (433)
T KOG0268|consen 265 -------------------------------------------------LNVHKDHVSAVMDVDFSPTG----------- 284 (433)
T ss_pred -------------------------------------------------chhhcccceeEEEeccCCCc-----------
Confidence 01123677777777755554
Q ss_pred HhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC
Q 001628 432 SLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS 511 (1042)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~ 511 (1042)
.-+++|+.|.+||||.+..+.-+.+|-- -.-..|.|+.|+.|+
T Consensus 285 ----------------------------~EfvsgsyDksIRIf~~~~~~SRdiYht---------kRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 285 ----------------------------QEFVSGSYDKSIRIFPVNHGHSRDIYHT---------KRMQHVFCVKYSMDS 327 (433)
T ss_pred ----------------------------chhccccccceEEEeecCCCcchhhhhH---------hhhheeeEEEEeccc
Confidence 4789999999999999998765544411 011579999999999
Q ss_pred CEEEEEeccceEEEEEeccCC
Q 001628 512 RVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 512 ~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
+++++|+.|+.|++|+-...+
T Consensus 328 kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cEEEecCCCcceeeeecchhh
Confidence 999999999999999987543
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.8e-21 Score=200.02 Aligned_cols=298 Identities=17% Similarity=0.219 Sum_probs=214.8
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccc---cccCc---c--ccCCCCEEEEEE
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLS---ASHGN---E--VSGDPAVINILP 185 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~---~~~~~---~--~~~~~~V~~v~~ 185 (1042)
...+..|.-.|+|++++|+..+.++++.+|+|.=|++.++.. ..|.+|.. ..++. . ..|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~----~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKK----DRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcc----cccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 556677999999999999999999999999999999988752 11333331 11111 1 256678999999
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccc
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNL 265 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~ 265 (1042)
+| |+.+|++|+.|..|.||+.++.+.+.. +.+|...|.+++|- ...+.+.+++.|+++++|++......
T Consensus 211 S~--Dgkylatgg~d~~v~Iw~~~t~ehv~~--------~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 211 SS--DGKYLATGGRDRHVQIWDCDTLEHVKV--------FKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cC--CCcEEEecCCCceEEEecCcccchhhc--------ccccccceeeeeee-cCccceeeeecCCceEEEehhHhHHH
Confidence 99 999999999999999999999775554 58999999999997 77788999999999999999862100
Q ss_pred ccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCee
Q 001628 266 KTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCI 345 (1042)
Q Consensus 266 ~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 345 (1042)
.+ .
T Consensus 280 et-l---------------------------------------------------------------------------- 282 (479)
T KOG0299|consen 280 ET-L---------------------------------------------------------------------------- 282 (479)
T ss_pred HH-H----------------------------------------------------------------------------
Confidence 00 0
Q ss_pred eEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccc
Q 001628 346 DMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILS 425 (1042)
Q Consensus 346 ~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s 425 (1042)
-+|.+.|..+.
T Consensus 283 -----------------------------------------------------------yGHqd~v~~Id---------- 293 (479)
T KOG0299|consen 283 -----------------------------------------------------------YGHQDGVLGID---------- 293 (479)
T ss_pred -----------------------------------------------------------hCCccceeeec----------
Confidence 02222222222
Q ss_pred cchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEE
Q 001628 426 SADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 505 (1042)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l 505 (1042)
...-++.+-.|+.|+++|+|++.. ..+.+| .++...+-|+
T Consensus 294 -----------------------------aL~reR~vtVGgrDrT~rlwKi~e-esqlif----------rg~~~sidcv 333 (479)
T KOG0299|consen 294 -----------------------------ALSRERCVTVGGRDRTVRLWKIPE-ESQLIF----------RGGEGSIDCV 333 (479)
T ss_pred -----------------------------hhcccceEEeccccceeEEEeccc-cceeee----------eCCCCCeeeE
Confidence 111223555667999999999954 334445 7788899999
Q ss_pred EEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCc
Q 001628 506 YYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 585 (1042)
Q Consensus 506 ~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~ 585 (1042)
+|-.+ ..|++|+.+|.|.+|.+...+..- ....-+|..+ ......++..|++|+..|...++|+|+.+|.
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKkplf------~~~~AHgv~~---~~~~~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKKPLF------TSRLAHGVIP---ELDPVNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccCcee------EeeccccccC---CccccccccceeeeEecccCceEEecCCCCc
Confidence 99865 568889999999999998655422 1111111111 0111122358999999999999999999999
Q ss_pred EEEEeccCC----eEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEe
Q 001628 586 VYLLDTEGP----TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT 632 (1042)
Q Consensus 586 V~vwD~~~~----~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s 632 (1042)
|++|-+..+ .+++...+ .+-|++|+|++ +|..|++|.
T Consensus 404 vrLW~i~~g~r~i~~l~~ls~----~GfVNsl~f~~------sgk~ivagi 444 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLSL----VGFVNSLAFSN------SGKRIVAGI 444 (479)
T ss_pred eEEEEecCCccccceeeeccc----ccEEEEEEEcc------CCCEEEEec
Confidence 999999766 23333332 44899999998 888666664
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.7e-21 Score=224.33 Aligned_cols=332 Identities=11% Similarity=0.165 Sum_probs=220.9
Q ss_pred EecCCCcceEEEEEecCCCEEEEEe--CCCCEEEEEcCC-------------CceeeeeecCCCeEEEEEeCCCCEEEEE
Q 001628 75 LESSEAVSTKFLQFLENQGILLNVT--STNLIEVWDIDK-------------KRLSHVHVCKEEITSFTIMQHSNYMLLG 139 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs~~~~~Lvs~s--~dg~I~vWd~~~-------------~~~~~~~~h~~~It~v~~sp~~~~l~sg 139 (1042)
+..|+...|-.+..+|++..+++|+ .|+.++||+.+. +.+.....|.+.|+|+.|+|||+|||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 4466667788899999999999999 899999998642 1255667899999999999999999999
Q ss_pred eCCCcEEEEEccCCccc-eeeeeeeccc--ccc-cCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEE
Q 001628 140 DTAGKISVLKLDQESSQ-IVKMKYIIPL--SAS-HGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIF 215 (1042)
Q Consensus 140 ~~dG~I~vwd~~~~~~~-~~~~~~~ip~--~~~-~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~ 215 (1042)
++|+.|.||........ .....-..+. .|. .-....|+..|..+.|+| ++.++++++.|++|.+||..+.+.+.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence 99999999998741000 0000000000 010 001456899999999999 99999999999999999999976555
Q ss_pred EeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEE
Q 001628 216 SMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLK 295 (1042)
Q Consensus 216 ~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~ 295 (1042)
. +.+|...|..+.|. |-|++|++-+.|++|+||++.+-...+.+.......+.. .-++.+.
T Consensus 166 v--------l~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~----------T~f~RlS 226 (942)
T KOG0973|consen 166 V--------LRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT----------TFFLRLS 226 (942)
T ss_pred e--------eecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc----------ceeeecc
Confidence 4 48899999999997 999999999999999999976632222111111111111 1133344
Q ss_pred EEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEE
Q 001628 296 WVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYA 375 (1042)
Q Consensus 296 ~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~ 375 (1042)
|. |++..|.+..+.. + ....+.++..+ .
T Consensus 227 WS---PDG~~las~nA~n----------------------------~-----------------~~~~~~IieR~----t 254 (942)
T KOG0973|consen 227 WS---PDGHHLASPNAVN----------------------------G-----------------GKSTIAIIERG----T 254 (942)
T ss_pred cC---CCcCeecchhhcc----------------------------C-----------------CcceeEEEecC----C
Confidence 44 2222222111110 0 01111222221 2
Q ss_pred eecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCcc-
Q 001628 376 FDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS- 454 (1042)
Q Consensus 376 ~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 454 (1042)
|+ .-..+-+|..+++|+.|+|.-= ..... .|...
T Consensus 255 Wk----------------------~~~~LvGH~~p~evvrFnP~lf--------------e~~~~---------ng~~~~ 289 (942)
T KOG0973|consen 255 WK----------------------VDKDLVGHSAPVEVVRFNPKLF--------------ERNNK---------NGTSTQ 289 (942)
T ss_pred ce----------------------eeeeeecCCCceEEEEeChHHh--------------ccccc---------cCCccC
Confidence 22 0122348999999999986411 10000 00000
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCc
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 533 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~ 533 (1042)
....-.++|+|+.|++|-||... ..+|++.+. ......|..|+|+|||..|.+++.||+|.++.+.....
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~--~~RPl~vi~-------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTA--LPRPLFVIH-------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCcceEEEEEecCCccEEEEecC--CCCchhhhh-------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 00112378999999999999985 456666442 34457999999999999999999999999999985443
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.6e-22 Score=221.31 Aligned_cols=257 Identities=17% Similarity=0.253 Sum_probs=195.7
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee-----------------------------------------
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS----------------------------------------- 213 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~----------------------------------------- 213 (1042)
.|.+.|.++.|++ ||.+|++|+.||.|+||.+.....
T Consensus 265 ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 6889999999999 999999999999999999876110
Q ss_pred -----------EEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccC
Q 001628 214 -----------IFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNL 282 (1042)
Q Consensus 214 -----------~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~ 282 (1042)
.+.+.-+.+..+.+|...|..+.|+ ...+|++++.|.++++|++....
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~------------------- 401 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKE------------------- 401 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcc-------------------
Confidence 0000112234558999999999998 68899999999999999987520
Q ss_pred CCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCcc
Q 001628 283 GYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQD 362 (1042)
Q Consensus 283 ~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 362 (1042)
T Consensus 402 -------------------------------------------------------------------------------- 401 (712)
T KOG0283|consen 402 -------------------------------------------------------------------------------- 401 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCC
Q 001628 363 SFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLL 442 (1042)
Q Consensus 363 ~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 442 (1042)
.|.+| .|..-|||++|.|...
T Consensus 402 ---------CL~~F-----------------------------~HndfVTcVaFnPvDD--------------------- 422 (712)
T KOG0283|consen 402 ---------CLKVF-----------------------------SHNDFVTCVAFNPVDD--------------------- 422 (712)
T ss_pred ---------eeeEE-----------------------------ecCCeeEEEEecccCC---------------------
Confidence 01111 4778899999876544
Q ss_pred CCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccce
Q 001628 443 DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM 522 (1042)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~ 522 (1042)
+++++|+-||.||||++.......- ..-..-||+++|+|+|+..++|+.+|.
T Consensus 423 -----------------ryFiSGSLD~KvRiWsI~d~~Vv~W-----------~Dl~~lITAvcy~PdGk~avIGt~~G~ 474 (712)
T KOG0283|consen 423 -----------------RYFISGSLDGKVRLWSISDKKVVDW-----------NDLRDLITAVCYSPDGKGAVIGTFNGY 474 (712)
T ss_pred -----------------CcEeecccccceEEeecCcCeeEee-----------hhhhhhheeEEeccCCceEEEEEeccE
Confidence 6999999999999999997654322 233378999999999999999999999
Q ss_pred EEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC-CcEEEEEecCCcEEEEeccCCeEE--Ee
Q 001628 523 VRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEGPTVL--YQ 599 (1042)
Q Consensus 523 V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd-g~~La~gs~dg~V~vwD~~~~~~~--~~ 599 (1042)
+++|+.....+.....+. ++.. + -..+ ..||.++|.|. ...|.|.+.|..|+|+|.+...++ |+
T Consensus 475 C~fY~t~~lk~~~~~~I~-~~~~-K----------k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIR-LHNK-K----------KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEEccCCeEEEeeeEe-eccC-c----------cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999887664411110 0000 0 0111 47999999984 346888899999999999877776 55
Q ss_pred cccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 600 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 600 ~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+... .+.-....|+. ||.+|+++++|..|++|+..
T Consensus 542 G~~n---~~SQ~~Asfs~------Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRN---TSSQISASFSS------DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccc---CCcceeeeEcc------CCCEEEEeecCceEEEEeCC
Confidence 5533 22456778998 99999999999999999964
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=202.01 Aligned_cols=306 Identities=18% Similarity=0.266 Sum_probs=212.0
Q ss_pred CCEEEEEcCCCc-eeeeeec-CCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCC
Q 001628 102 NLIEVWDIDKKR-LSHVHVC-KEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDP 178 (1042)
Q Consensus 102 g~I~vWd~~~~~-~~~~~~h-~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 178 (1042)
..+.+||++++. +..+.+- ...-.++..- ...|++++.. ...|.+|.+..... . . .|. --++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-~-~-q~~-----------v~Pg 82 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-V-V-QYI-----------VLPG 82 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-h-h-hhc-----------cccc
Confidence 449999999998 4444433 2111111111 2256666654 45899999877542 1 1 111 1367
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEe
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
+|.+++-+| +|.+|+.|+..|.|++|.+.+|. ++..+..|-..|+|+.|+ .||.+|++|+.||.|.+|.
T Consensus 83 ~v~al~s~n--~G~~l~ag~i~g~lYlWelssG~--------LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 83 PVHALASSN--LGYFLLAGTISGNLYLWELSSGI--------LLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ceeeeecCC--CceEEEeecccCcEEEEEecccc--------HHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEE
Confidence 899999999 89999999999999999999955 555568999999999999 8999999999999999999
Q ss_pred CCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEee
Q 001628 259 VPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLAL 338 (1042)
Q Consensus 259 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 338 (1042)
+.+- +...+..
T Consensus 152 l~~l----------------------------------------------v~a~~~~----------------------- 162 (476)
T KOG0646|consen 152 LTDL----------------------------------------------VSADNDH----------------------- 162 (476)
T ss_pred EEee----------------------------------------------cccccCC-----------------------
Confidence 8751 0000000
Q ss_pred CCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEee
Q 001628 339 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 418 (1042)
Q Consensus 339 ~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~ 418 (1042)
..--++.|. .|.-+|+.+...+
T Consensus 163 ------------------------------~~~p~~~f~----------------------------~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 163 ------------------------------SVKPLHIFS----------------------------DHTLSITDLQIGS 184 (476)
T ss_pred ------------------------------Cccceeeec----------------------------cCcceeEEEEecC
Confidence 000122233 5555666665332
Q ss_pred cCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCC
Q 001628 419 GNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLS 498 (1042)
Q Consensus 419 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~ 498 (1042)
.+ ....++|++.|.++|+||+..+.+..-. ..
T Consensus 185 Gg-------------------------------------~~~rl~TaS~D~t~k~wdlS~g~LLlti-----------~f 216 (476)
T KOG0646|consen 185 GG-------------------------------------TNARLYTASEDRTIKLWDLSLGVLLLTI-----------TF 216 (476)
T ss_pred CC-------------------------------------ccceEEEecCCceEEEEEeccceeeEEE-----------ec
Confidence 22 2348999999999999999998654333 22
Q ss_pred CCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccC-ccceeeeEEEeecCC--CeEEEEEecCCc
Q 001628 499 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG-NSHIIHSVKVMKING--SIISLNMNRNSQ 575 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~--~V~~l~~spdg~ 575 (1042)
..++.+++++|..+.+.+|+.+|.|.+.++........ ... .++ ..+..+.-.+.+|.+ +|+||+++-||.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-~v~-----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-GVN-----QKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-ccc-----ccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 46899999999999999999999999888875543221 000 000 111111234556667 999999999999
Q ss_pred EEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEe
Q 001628 576 HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 617 (1042)
Q Consensus 576 ~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~ 617 (1042)
+|++|+.||.|.|||+.+..++..-.. ..++|+.+.+.|
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNLQINP 329 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhh---hccccceeEeec
Confidence 999999999999999988777622221 245999999987
No 95
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=2.4e-20 Score=213.81 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=150.5
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEE--------------EEecCCCcceEEEEEec-CCCEEEEEeCCCCE
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQA--------------LLESSEAVSTKFLQFLE-NQGILLNVTSTNLI 104 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~--------------~~~~~~~~~v~~l~fs~-~~~~Lvs~s~dg~I 104 (1042)
.|...++++++..++.+..+..+..|+..|.... .+.+| ..+|.+++|+| ++++|++++.|++|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH-~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQ-EGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCC-CCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 4555566667666666666666677765533211 23344 47899999999 78899999999999
Q ss_pred EEEEcCCCc--------eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcccc
Q 001628 105 EVWDIDKKR--------LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVS 175 (1042)
Q Consensus 105 ~vWd~~~~~--------~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~ 175 (1042)
++||+.++. +..+.+|...|.+++|+|++ ++|++|+.||+|++||+.+... . ..+ ..
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~---~~l---------~~ 166 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--V---EVI---------KC 166 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--E---EEE---------cC
Confidence 999997642 45778899999999999986 7999999999999999988652 1 111 23
Q ss_pred CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCc-eeEEEEEccCCCEEEEEe----c
Q 001628 176 GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQ-VTSACWACPIGSKVAVGY----S 250 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~-I~~l~~~~~~g~~l~sg~----~ 250 (1042)
|...|.+++|+| ++..|++++.|+.|++||+++++.+..+ ..|... +..+.|. +++..+++++ .
T Consensus 167 h~~~V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl--------~~H~~~~~~~~~w~-~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 167 HSDQITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSV--------EAHASAKSQRCLWA-KRKDLIITLGCSKSQ 235 (493)
T ss_pred CCCceEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEE--------ecCCCCcceEEEEc-CCCCeEEEEecCCCC
Confidence 567899999999 8999999999999999999998766553 445443 4567787 7777777654 4
Q ss_pred CCeEEEEeCCC
Q 001628 251 NGEILIWGVPS 261 (1042)
Q Consensus 251 dG~I~iWd~~~ 261 (1042)
|+.|++||++.
T Consensus 236 Dr~VklWDlr~ 246 (493)
T PTZ00421 236 QRQIMLWDTRK 246 (493)
T ss_pred CCeEEEEeCCC
Confidence 78999999976
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=197.03 Aligned_cols=217 Identities=17% Similarity=0.337 Sum_probs=173.0
Q ss_pred CCCCCCCcCceeeee--eccc--CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEe--cCCCcceEEEEEecCCC
Q 001628 20 DGLKSSDVDPRLVFH--YGFP--SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLE--SSEAVSTKFLQFLENQG 93 (1042)
Q Consensus 20 ~~l~~~~~~~~~~~~--~G~~--~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~--~~~~~~v~~l~fs~~~~ 93 (1042)
..|.+..+++..+.+ .++| +.|+++.|+|...+|.+|+.||+++||.++|+.-..++ +-...||.+.+|.|+|.
T Consensus 191 ~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 191 KLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH 270 (514)
T ss_pred ccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc
Confidence 445566667666655 3444 57999999999999999999999999999975443333 33458999999999998
Q ss_pred -EEEEEeCCCCEEEEEcCCCceeee---eecC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeeccccc
Q 001628 94 -ILLNVTSTNLIEVWDIDKKRLSHV---HVCK-EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSA 168 (1042)
Q Consensus 94 -~Lvs~s~dg~I~vWd~~~~~~~~~---~~h~-~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~ 168 (1042)
.+++++....++.||+.+.++..+ .+++ ..+..+.+++++++|++.+..|.|.+....+.+. . ..+.+
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i-~s~Ki---- 343 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--I-TSFKI---- 343 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--h-heeee----
Confidence 888899999999999999874433 4454 3577899999999999999999999999888762 1 11222
Q ss_pred ccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE
Q 001628 169 SHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG 248 (1042)
Q Consensus 169 ~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg 248 (1042)
.+.|..++|+. ++..|++.+.+|.|.+||+++..++.++.. ...-.-+++|.+ ++|.+||+|
T Consensus 344 --------eG~v~~~~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-------~G~v~gts~~~S-~ng~ylA~G 405 (514)
T KOG2055|consen 344 --------EGVVSDFTFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVD-------DGSVHGTSLCIS-LNGSYLATG 405 (514)
T ss_pred --------ccEEeeEEEec--CCcEEEEEcCCceEEEEecCCcceEEEEee-------cCccceeeeeec-CCCceEEec
Confidence 57899999997 899999999999999999999988887521 111233466776 899999999
Q ss_pred ecCCeEEEEeCCC
Q 001628 249 YSNGEILIWGVPS 261 (1042)
Q Consensus 249 ~~dG~I~iWd~~~ 261 (1042)
+..|.|.|||..+
T Consensus 406 S~~GiVNIYd~~s 418 (514)
T KOG2055|consen 406 SDSGIVNIYDGNS 418 (514)
T ss_pred cCcceEEEeccch
Confidence 9999999999876
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=186.50 Aligned_cols=311 Identities=17% Similarity=0.208 Sum_probs=204.0
Q ss_pred EecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCcee-----eeeecCCCeEEEEEeCCCCEEEEEeCCC-cEEEE
Q 001628 75 LESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLS-----HVHVCKEEITSFTIMQHSNYMLLGDTAG-KISVL 148 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~-----~~~~h~~~It~v~~sp~~~~l~sg~~dG-~I~vw 148 (1042)
+.+|. ..|++|+|+.||++|++++.|++|++|+++.-... ....--+.-|.++|.||.+-+++....| ++++|
T Consensus 82 LKgH~-~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 82 LKGHK-KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhccC-CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 44554 78999999999999999999999999998763211 1111113568899999998777776655 89999
Q ss_pred EccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccccc
Q 001628 149 KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHE 228 (1042)
Q Consensus 149 d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~ 228 (1042)
.+...+...... ..+++..- .....|...+..+-..- ++.+|++++.|..|.+|++. |+.+..+ ...
T Consensus 161 k~~K~~dG~~~~-~~v~~D~~-~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq~L~~i--------dtn 227 (420)
T KOG2096|consen 161 KLVKKTDGSGSH-HFVHIDNL-EFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQLLQSI--------DTN 227 (420)
T ss_pred EeeecccCCCCc-cccccccc-ccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cceeeee--------ccc
Confidence 987654211001 11111110 01233556777776665 78899999999999999999 6655543 222
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEE
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 308 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~ 308 (1042)
...-+..+.+ |+|.++++++..-.+++|.+--+
T Consensus 228 q~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~---------------------------------------------- 260 (420)
T KOG2096|consen 228 QSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFT---------------------------------------------- 260 (420)
T ss_pred cccccceeeC-CCCcEEEEecCCCCceEEEEEec----------------------------------------------
Confidence 3333445555 99999999999989999976421
Q ss_pred ecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccC
Q 001628 309 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 388 (1042)
Q Consensus 309 ~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~ 388 (1042)
++|++.
T Consensus 261 ------------------------------------------------------------kdG~fq-------------- 266 (420)
T KOG2096|consen 261 ------------------------------------------------------------KDGTFQ-------------- 266 (420)
T ss_pred ------------------------------------------------------------cCcchh--------------
Confidence 111100
Q ss_pred CCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 389 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
.....+.+.+|.+.|+.++|+++.. .++|.+.|
T Consensus 267 --------ev~rvf~LkGH~saV~~~aFsn~S~---------------------------------------r~vtvSkD 299 (420)
T KOG2096|consen 267 --------EVKRVFSLKGHQSAVLAAAFSNSST---------------------------------------RAVTVSKD 299 (420)
T ss_pred --------hhhhhheeccchhheeeeeeCCCcc---------------------------------------eeEEEecC
Confidence 0011244568999999999665554 89999999
Q ss_pred CcEEEEeCCCCcee--eeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccc
Q 001628 469 GAINFWDVSCPLFL--LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSK 546 (1042)
Q Consensus 469 g~IriWd~~~~~~~--~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~ 546 (1042)
|++|+||..-.... .-+.|+.. ...+...++.-..+++||++..||.+.. ..+++|......... .+.
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g-~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~--~~e------ 369 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEG-SAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYP--ELE------ 369 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcC-CcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccch--hHH------
Confidence 99999998743100 00011100 0111223344448999999999996554 468888876644422 222
Q ss_pred cCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 547 KGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 547 ~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
..|. +.|++++|+++|+++|+++ |..|+|+-
T Consensus 370 --~~h~----------~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 --DIHS----------TTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred --Hhhc----------CceeeEEecCCCcEEeeec-ceeeeeec
Confidence 3344 8999999999999999987 46667664
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.6e-21 Score=208.18 Aligned_cols=192 Identities=15% Similarity=0.221 Sum_probs=157.7
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeee-
Q 001628 43 KFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHV- 119 (1042)
Q Consensus 43 ~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~- 119 (1042)
-+.|+ ....||+|.. ..|++|+.. |.+..+...+ ...|+++.|+++|++|++|..+|.|.|||....+ +..+..
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 36677 5678899875 569999987 4555555554 6889999999999999999999999999998876 677777
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC
Q 001628 120 CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 120 h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~ 199 (1042)
|...|-|++|. ...+.+|+.+|.|..+|+...+.... . ...|...|..+.|++ |+.++++|+.
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~------------~~~H~qeVCgLkws~--d~~~lASGgn 321 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-T------------LQGHRQEVCGLKWSP--DGNQLASGGN 321 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-h------------hhcccceeeeeEECC--CCCeeccCCC
Confidence 99999999998 78899999999999999988652111 0 234678999999999 9999999999
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE--ecCCeEEEEeCCCc
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG--YSNGEILIWGVPSI 262 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg--~~dG~I~iWd~~~~ 262 (1042)
|+.+.|||.....+.+. +..|...|.+++|.+-....||+| +.|+.|++||..++
T Consensus 322 DN~~~Iwd~~~~~p~~~--------~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFT--------FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceEeccCCCccccEE--------EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999976555444 488999999999973346678886 47999999999875
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=4.6e-21 Score=220.78 Aligned_cols=312 Identities=16% Similarity=0.207 Sum_probs=219.8
Q ss_pred cCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 120 CKEEITSFTIMQHSNYMLLGD--TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 120 h~~~It~v~~sp~~~~l~sg~--~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
++..|.+++++|++..+++|+ .||.+++|+.+.-..........+|..... ...|.+.|.|+.|+| ||.+|++|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~--m~~h~~sv~CVR~S~--dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT--MDDHDGSVNCVRFSP--DGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee--eccccCceeEEEECC--CCCeEeec
Confidence 345699999999999999999 899999999764210000000001111111 356789999999999 99999999
Q ss_pred ECCCeEEEEeccC--CeeEEEeCC--------cccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcccccc
Q 001628 198 FRDGLISLWDIRE--SKSIFSMGG--------NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKT 267 (1042)
Q Consensus 198 ~~dg~I~vWd~~~--~~~~~~~~g--------~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~ 267 (1042)
+.|+.|.||+... ...++..+| +....+.+|...|..++|+ |++.+|++++.|++|.+||..+..
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF~---- 162 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAKTFE---- 162 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccccce----
Confidence 9999999999984 111221111 1234568899999999998 999999999999999999988620
Q ss_pred ccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeE
Q 001628 268 EECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDM 347 (1042)
Q Consensus 268 ~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1042)
T Consensus 163 -------------------------------------------------------------------------------- 162 (942)
T KOG0973|consen 163 -------------------------------------------------------------------------------- 162 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccc
Q 001628 348 EIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA 427 (1042)
Q Consensus 348 ~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~ 427 (1042)
.+.+ +..|.+.|-.+.
T Consensus 163 ------------------------~~~v----------------------------l~~H~s~VKGvs------------ 178 (942)
T KOG0973|consen 163 ------------------------LLKV----------------------------LRGHQSLVKGVS------------ 178 (942)
T ss_pred ------------------------eeee----------------------------eecccccccceE------------
Confidence 0001 114444444444
Q ss_pred hhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEE
Q 001628 428 DEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY 507 (1042)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~f 507 (1042)
+.|-|.++++-+.|++|++|++..-.+.... ....++ ..-...+..+.|
T Consensus 179 ---------------------------~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I--t~pf~~--~~~~T~f~RlSW 227 (942)
T KOG0973|consen 179 ---------------------------WDPIGKYFASQSDDRTLKVWRTSDWGIEKSI--TKPFEE--SPLTTFFLRLSW 227 (942)
T ss_pred ---------------------------ECCccCeeeeecCCceEEEEEcccceeeEee--ccchhh--CCCcceeeeccc
Confidence 4456669999999999999997764332221 100011 223366888999
Q ss_pred eCCCCEEEEEecc----ceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC-----Cc---
Q 001628 508 DGTSRVLVSGDQS----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQ--- 575 (1042)
Q Consensus 508 sp~~~~Lasg~~d----G~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd-----g~--- 575 (1042)
+|||.+|++...- .++.|.+-.+... + .-+.+|.+++++++|+|. .+
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~--~-------------------~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKV--D-------------------KDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCcee--e-------------------eeeecCCCceEEEEeChHHhccccccCC
Confidence 9999999987542 2344444322221 1 334455699999999982 12
Q ss_pred ---------EEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC
Q 001628 576 ---------HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 576 ---------~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
.+|+|+.|++|.||....++.++..|-. ....|..++|+| ||..|+.+|.||+|.++..+.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWsp------dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSP------DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcC------CCCeEEEEecCCeEEEEEcch
Confidence 6899999999999999888887655532 355899999999 999999999999999998553
No 100
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=4.1e-19 Score=190.88 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=107.5
Q ss_pred ceeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCC
Q 001628 113 RLSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAES 191 (1042)
Q Consensus 113 ~~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~ 191 (1042)
.+..+.+|...|+.+.|+|-. .+|++|+.|..|+||.+..+.. ..+ .-|... .....-.|.++.|||. .
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~--q~L--Sape~~----~g~~~~~vE~l~fHpT--a 140 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS--QKL--SAPEID----VGGGNVIVECLRFHPT--A 140 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcc--ccc--CCccee----ecCCceEEEEeecccC--c
Confidence 367788999999999999976 6788999999999999985431 001 011100 1112457889999995 4
Q ss_pred CeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCC
Q 001628 192 KRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG 271 (1042)
Q Consensus 192 ~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~ 271 (1042)
.-|+..+..|.++|||+.+++.+.. +.+|...|.++.|+ .||..|++.+.|..|+|||.+.........++
T Consensus 141 Dgil~s~a~g~v~i~D~stqk~~~e--------l~~h~d~vQSa~Ws-eDG~llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 141 DGILASGAHGSVYITDISTQKTAVE--------LSGHTDKVQSADWS-EDGKLLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred CceEEeccCceEEEEEcccCceeec--------ccCCchhhhccccc-cCCceEeeecCCcceEEeCCccCCCccccccc
Confidence 4477778889999999999876665 48899999999998 99999999999999999999875433333344
Q ss_pred cc
Q 001628 272 TQ 273 (1042)
Q Consensus 272 ~~ 273 (1042)
|.
T Consensus 212 H~ 213 (1012)
T KOG1445|consen 212 HG 213 (1012)
T ss_pred cc
Confidence 43
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.5e-21 Score=187.62 Aligned_cols=219 Identities=17% Similarity=0.287 Sum_probs=182.8
Q ss_pred CCCCCCCCCcCceeeeee-cccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEE
Q 001628 18 SSDGLKSSDVDPRLVFHY-GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGIL 95 (1042)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~-G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~L 95 (1042)
..+..+...+..+.+..| ||...|..++.+..+.++++++.|.+.+||..+ |.....+.+|. ..|.++.|++.+.++
T Consensus 127 ivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~-GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 127 IVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT-GSVNSIKFHNSGLLL 205 (481)
T ss_pred heeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc-cceeeEEeccccceE
Confidence 445566666777777765 899999999999999999999999999999998 45666777776 789999999999999
Q ss_pred EEEeCCCCEEEEEc------CC------------------------------C-c----eeeeeecCCCeEEEEEeCCCC
Q 001628 96 LNVTSTNLIEVWDI------DK------------------------------K-R----LSHVHVCKEEITSFTIMQHSN 134 (1042)
Q Consensus 96 vs~s~dg~I~vWd~------~~------------------------------~-~----~~~~~~h~~~It~v~~sp~~~ 134 (1042)
++++.|++..||.. .. + . +..+.+|.+.|.|..|...++
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999962 00 0 1 346677889999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeE
Q 001628 135 YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSI 214 (1042)
Q Consensus 135 ~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~ 214 (1042)
.+++++.|.+..+||++++.. ... ..+|+...+.++-+| ....+++++.|.+.++||++..-
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~--v~~------------LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI-- 347 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEV--VNI------------LTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAI-- 347 (481)
T ss_pred eeeeeeccccceeeeeccCce--ecc------------ccCcchhccccccCC--cceEEEEeccCceeEeccchhhc--
Confidence 999999999999999999872 211 345678899999999 78889999999999999998532
Q ss_pred EEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 215 FSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 215 ~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.....+.+|...|+++.|. .+..+++|+.|.+|++||+...
T Consensus 348 -----~sV~VFQGHtdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 348 -----QSVAVFQGHTDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred -----ceeeeecccccceeEEEEe--cCCceeecCCCceEEEeeeccc
Confidence 1233458999999999997 6788999999999999999874
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=193.16 Aligned_cols=198 Identities=15% Similarity=0.307 Sum_probs=171.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeee
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHV 117 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~ 117 (1042)
.+.++...|....+++|+.|..+.+||.+ +++..++.+|. ..|+.+.|+|+...+++++.|-.|+||...... ....
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~-kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT-KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc-eEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46777777777899999999999999987 35667788877 678889999999999999999999999987766 7788
Q ss_pred eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 118 HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 118 ~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
..|+++|+.+..+|.+.||++++.||+..+.|+.++.. +.... .. ..+..+++.+||| ||..+.+|
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs-----~~------~s~v~~ts~~fHp--DgLifgtg 365 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-LTVVS-----DE------TSDVEYTSAAFHP--DGLIFGTG 365 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE-EEEEe-----ec------cccceeEEeeEcC--CceEEecc
Confidence 89999999999999999999999999999999998863 21111 00 1235799999999 99999999
Q ss_pred ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 198 FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
..||.|+|||+.+...+.. +.+|.++|.++.|+ .+|-+++++..|+.|++||++.
T Consensus 366 t~d~~vkiwdlks~~~~a~--------Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAK--------FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred CCCceEEEEEcCCcccccc--------CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehh
Confidence 9999999999999665544 47899999999998 9999999999999999999986
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=1.5e-20 Score=205.39 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=158.9
Q ss_pred eecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCe---EEEEecCCCcceEEEEEec-CCCEEEEEeCCCCEEEEEc
Q 001628 34 HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNT---QALLESSEAVSTKFLQFLE-NQGILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~---~~~~~~~~~~~v~~l~fs~-~~~~Lvs~s~dg~I~vWd~ 109 (1042)
..||...|..+++-+. -.++.|++||++++|...++. ...+..|.......++|.+ ++.+|++|+.|.+|.+|.+
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3689999988887654 478999999999999986322 1335555544333377775 5557999999999999999
Q ss_pred CCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 110 DKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 110 ~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
.+.. +..+.+|+..|+|++...++. |++|+.|.++++|...... +. ..+|..+|.++..-|
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-------~~---------l~gH~asVWAv~~l~- 150 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-------YS---------LQGHTASVWAVASLP- 150 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-------cc---------cCCcchheeeeeecC-
Confidence 9988 788999999999999888877 9999999999999887643 11 234688999999998
Q ss_pred CCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 189 AESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+. .+++|+.|.+|++|.-. ..++++.+|..-|..+++. ++..|++++.||.|++|++..
T Consensus 151 -e~-~~vTgsaDKtIklWk~~----------~~l~tf~gHtD~VRgL~vl--~~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 151 -EN-TYVTGSADKTIKLWKGG----------TLLKTFSGHTDCVRGLAVL--DDSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred -CC-cEEeccCcceeeeccCC----------chhhhhccchhheeeeEEe--cCCCeEeecCCceEEEEeccC
Confidence 45 89999999999999763 3466679999999999998 567789999999999999965
No 104
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.9e-20 Score=184.25 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=133.2
Q ss_pred EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001628 73 ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 73 ~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
..+..+....|..|.|+|.++.|++++.||++++||.....+.....|..++.+++|.+ ...+++|+-||.|+.+|+.+
T Consensus 6 ~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 6 FELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred cccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 34555556889999999999999999999999999999998888888999999999977 56789999999999999998
Q ss_pred CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCce
Q 001628 153 ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 153 ~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I 232 (1042)
+.... ...|..+|.||.+.+ ..+.+++|+.|++|++||.++...+.. ......|
T Consensus 85 ~~~~~---------------igth~~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~~~~~~~---------~d~~kkV 138 (323)
T KOG1036|consen 85 GNEDQ---------------IGTHDEGIRCIEYSY--EVGCVISGSWDKTIKFWDPRNKVVVGT---------FDQGKKV 138 (323)
T ss_pred Cccee---------------eccCCCceEEEEeec--cCCeEEEcccCccEEEEeccccccccc---------cccCceE
Confidence 76211 234688999999999 788899999999999999997544433 2233478
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.++.. .|+.|++|+.|..+.+||++.
T Consensus 139 y~~~v---~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 139 YCMDV---SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred EEEec---cCCEEEEeecCceEEEEEccc
Confidence 88755 599999999999999999987
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3e-20 Score=183.99 Aligned_cols=161 Identities=12% Similarity=0.186 Sum_probs=128.4
Q ss_pred EecCCCcceEEEEEec-CCCEEEEEeCCCCEEEEEcCC-Cc--eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001628 75 LESSEAVSTKFLQFLE-NQGILLNVTSTNLIEVWDIDK-KR--LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKL 150 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs~-~~~~Lvs~s~dg~I~vWd~~~-~~--~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~ 150 (1042)
+..+....|.+|+|+| ...++++++-||+|++|+++. +. ......|+++|.+++|+.+|..+++|+.|+.+++||+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 3455568899999999 455666889999999999987 34 4566789999999999999999999999999999999
Q ss_pred cCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 151 DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
.+++. .+. ..|.++|..+.|-+......|++|+.|.+|++||.+....+... .-..
T Consensus 102 ~S~Q~--~~v-------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~---------~LPe 157 (347)
T KOG0647|consen 102 ASGQV--SQV-------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL---------QLPE 157 (347)
T ss_pred cCCCe--eee-------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee---------eccc
Confidence 99873 222 23788999999988323448999999999999999987766652 2344
Q ss_pred ceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 231 QVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 231 ~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.+.++.. ....++++..+..|.++++..+
T Consensus 158 RvYa~Dv---~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 158 RVYAADV---LYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeeehhc---cCceeEEEecCCcEEEEEcCCC
Confidence 5555533 3678888999999999999764
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.3e-21 Score=208.71 Aligned_cols=204 Identities=18% Similarity=0.276 Sum_probs=163.7
Q ss_pred EEEEc-CCCCEEEEEEcCCeEEEEecC---CC----eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-
Q 001628 43 KFAYD-PLQKILAAATKDGRIKLYGRH---NN----TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR- 113 (1042)
Q Consensus 43 ~la~s-p~~~~LA~gs~dg~I~iw~~~---g~----~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~- 113 (1042)
++..+ |.+++|.+|++||.|++|+.. +. ....+++|. ..|..+....+++.|++++.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH-hHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence 45555 466779999999999999876 11 233444444 789889999999999999999999999987763
Q ss_pred --eeeeeecCCCeEEEEE-eCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC
Q 001628 114 --LSHVHVCKEEITSFTI-MQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE 190 (1042)
Q Consensus 114 --~~~~~~h~~~It~v~~-sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d 190 (1042)
..++..|...|.|++. -++...+|+|+-|+.|++||+..+...+. ..+..........++..+|++++.++ .
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~---~s~n~~t~~sl~sG~k~siYSLA~N~--t 182 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV---ASFNNVTVNSLGSGPKDSIYSLAMNQ--T 182 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh---hhccccccccCCCCCccceeeeecCC--c
Confidence 6778889999999999 77889999999999999999997631011 11111011111225678999999999 7
Q ss_pred CCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 191 SKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 191 ~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+..+++|+..+.+++||.++++.+.. +.+|...|.++..+ +||..+++++.||+|++||+..
T Consensus 183 ~t~ivsGgtek~lr~wDprt~~kimk--------LrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTCKKIMK--------LRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ceEEEecCcccceEEeccccccceee--------eeccccceEEEEEc-CCCCeEeecCCCceEEeeeccc
Confidence 89999999999999999999775554 37999999999998 9999999999999999999986
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=9.6e-22 Score=198.77 Aligned_cols=288 Identities=13% Similarity=0.237 Sum_probs=214.5
Q ss_pred eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+.. . ...|.+.|.+|++.- .
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----~---------f~AH~G~V~Gi~v~~----~ 120 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----T---------FKAHEGLVRGICVTQ----T 120 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----e---------eecccCceeeEEecc----c
Confidence 45667899999999999988 889999999999999999876311 1 234678999999973 6
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
.+++++.|.+|+.|-+... ++..+ .....+..+.-+ ..++.++|++.+ |-|||....
T Consensus 121 ~~~tvgdDKtvK~wk~~~~-p~~ti---------lg~s~~~gIdh~-~~~~~FaTcGe~--i~IWD~~R~---------- 177 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGP-PLHTI---------LGKSVYLGIDHH-RKNSVFATCGEQ--IDIWDEQRD---------- 177 (433)
T ss_pred ceEEecCCcceeeeeccCC-cceee---------eccccccccccc-cccccccccCce--eeecccccC----------
Confidence 6899999999999998752 22222 223455555554 567889999887 999998752
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
.|+.++.|-.
T Consensus 178 ----------------~Pv~smswG~------------------------------------------------------ 187 (433)
T KOG0268|consen 178 ----------------NPVSSMSWGA------------------------------------------------------ 187 (433)
T ss_pred ----------------CccceeecCC------------------------------------------------------
Confidence 4455555532
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
+.|.++.|+|...
T Consensus 188 --------------------------------------------------------Dti~svkfNpvET----------- 200 (433)
T KOG0268|consen 188 --------------------------------------------------------DSISSVKFNPVET----------- 200 (433)
T ss_pred --------------------------------------------------------CceeEEecCCCcc-----------
Confidence 2344455444433
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 512 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~ 512 (1042)
.+|+++..|++|.+||+.......-..+ ...-..|+|+|+.-
T Consensus 201 ---------------------------sILas~~sDrsIvLyD~R~~~Pl~KVi~-----------~mRTN~IswnPeaf 242 (433)
T KOG0268|consen 201 ---------------------------SILASCASDRSIVLYDLRQASPLKKVIL-----------TMRTNTICWNPEAF 242 (433)
T ss_pred ---------------------------hheeeeccCCceEEEecccCCccceeee-----------eccccceecCcccc
Confidence 3788899999999999987643322211 23456799999999
Q ss_pred EEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEecc
Q 001628 513 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 513 ~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~ 592 (1042)
.+++|++|..+..||+....... ..+ ..|. ++|.++.|||.|+-+++|+.|.+|+||..+
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~--~v~--------~dhv----------sAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPL--NVH--------KDHV----------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ceeeccccccceehhhhhhcccc--hhh--------cccc----------eeEEEeccCCCcchhccccccceEEEeecC
Confidence 99999999999999986433211 112 3444 999999999999999999999999999987
Q ss_pred CCeEE---EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCcee
Q 001628 593 GPTVL---YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 648 (1042)
Q Consensus 593 ~~~~~---~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i 648 (1042)
.+.-. +...+. .|.++.||. |..++++||+|+.|++|.....+.+
T Consensus 303 ~~~SRdiYhtkRMq-----~V~~Vk~S~------Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQ-----HVFCVKYSM------DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred CCcchhhhhHhhhh-----eeeEEEEec------cccEEEecCCCcceeeeecchhhhc
Confidence 65433 333333 899999998 9999999999999999996644433
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.1e-19 Score=170.03 Aligned_cols=311 Identities=14% Similarity=0.161 Sum_probs=209.4
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcccee--eeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIV--KMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~--~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
.-...|.+++|.|.|.+.++|+...+.+|.....-.. +. ......|....+.+...|.+.|.|.+|+| +|..+++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~-~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~--~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID-LRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP--CGELIAT 106 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccC-cccccccccCCCeEEeeeccccCccEEEEEecC--ccCeEEe
Confidence 3446799999999999999999999998876543210 00 00011122222233456789999999999 9999999
Q ss_pred EECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEc--cC-CCEEEEEecCCeEEEEeCCCccccccccCCcc
Q 001628 197 IFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWAC--PI-GSKVAVGYSNGEILIWGVPSILNLKTEECGTQ 273 (1042)
Q Consensus 197 ~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~--~~-g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~ 273 (1042)
|++|.+|++.-.+...+... |.. -.+..|.+.|..++|.. .. |..|++++ .|...||-..-++ +
T Consensus 107 gsndk~ik~l~fn~dt~~~~--g~d-le~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~-------g-- 173 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNAT--GHD-LEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGR-------G-- 173 (350)
T ss_pred cCCCceEEEEeccccccccc--Ccc-eeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEEEeecCC-------C--
Confidence 99999999877665432221 221 12466888999999972 11 23444433 3444444333210 0
Q ss_pred ccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCC
Q 001628 274 ITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSS 353 (1042)
Q Consensus 274 ~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (1042)
.++ -.
T Consensus 174 -~~~-----------------------------~a--------------------------------------------- 178 (350)
T KOG0641|consen 174 -QGF-----------------------------HA--------------------------------------------- 178 (350)
T ss_pred -Ccc-----------------------------ee---------------------------------------------
Confidence 000 00
Q ss_pred CCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHh
Q 001628 354 SDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSL 433 (1042)
Q Consensus 354 ~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~ 433 (1042)
+.+|.+.|..+.
T Consensus 179 --------------------------------------------------~sghtghilaly------------------ 190 (350)
T KOG0641|consen 179 --------------------------------------------------LSGHTGHILALY------------------ 190 (350)
T ss_pred --------------------------------------------------ecCCcccEEEEE------------------
Confidence 001221111111
Q ss_pred hhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC---CCeEEEEEeCC
Q 001628 434 LAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG---IPLTALYYDGT 510 (1042)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~---~~V~~l~fsp~ 510 (1042)
+-++-++++|++|.+||+||+.-+.....+ .+++...+ ..|.+++..|.
T Consensus 191 ----------------------swn~~m~~sgsqdktirfwdlrv~~~v~~l------~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 191 ----------------------SWNGAMFASGSQDKTIRFWDLRVNSCVNTL------DNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred ----------------------EecCcEEEccCCCceEEEEeeeccceeeec------cCcccCCCcccceeEEEEECCC
Confidence 112338999999999999999877554433 23333333 78999999999
Q ss_pred CCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 511 SRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 511 ~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
|++|++|-.|....+|++..+.... .| ..| ...|.++.|||...+|.+|+.|..|++-|
T Consensus 243 grll~sg~~dssc~lydirg~r~iq--~f---------~ph----------sadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQ--RF---------HPH----------SADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceee--ee---------CCC----------ccceeEEEeCCCceEEEEecccceEEEee
Confidence 9999999999999999999876644 34 344 49999999999999999999999999999
Q ss_pred ccCCeEE-EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 591 TEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+++.--- +..-....|...+..+.|.| ..--+++.+.|.++.+|-..
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~------~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHP------QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecC------ccceeeeccCcceEEEeccC
Confidence 9863211 11112233677899999998 77788899999999999753
No 109
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=1.2e-19 Score=208.15 Aligned_cols=265 Identities=14% Similarity=0.184 Sum_probs=184.2
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEe--CCcc---cccccccCCceeEEEEEcc-CCCEEEEEecCC
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSM--GGNV---LQSVYHETKQVTSACWACP-IGSKVAVGYSNG 252 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~--~g~~---~~~~~~~~~~I~~l~~~~~-~g~~l~sg~~dG 252 (1042)
.|......+ ++..++++..+.....|+...+..+... .|+. ...+.+|...|.+++|+ | ++..|++|+.||
T Consensus 22 ~i~~~~~~~--d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs-P~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALW--DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN-PFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccC--CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc-CCCCCEEEEEeCCC
Confidence 344445555 6666788888888888887766544322 1221 22457899999999998 7 889999999999
Q ss_pred eEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccce
Q 001628 253 EILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESR 332 (1042)
Q Consensus 253 ~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~ 332 (1042)
+|++||+.++..... .
T Consensus 99 tIkIWdi~~~~~~~~-----~----------------------------------------------------------- 114 (493)
T PTZ00421 99 TIMGWGIPEEGLTQN-----I----------------------------------------------------------- 114 (493)
T ss_pred EEEEEecCCCccccc-----c-----------------------------------------------------------
Confidence 999999976200000 0
Q ss_pred eEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCccee
Q 001628 333 TTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSIT 412 (1042)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt 412 (1042)
..+...+..|...|.
T Consensus 115 -----------------------------------------------------------------~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 115 -----------------------------------------------------------------SDPIVHLQGHTKKVG 129 (493)
T ss_pred -----------------------------------------------------------------CcceEEecCCCCcEE
Confidence 000011236777888
Q ss_pred EEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeecccccc
Q 001628 413 AMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 492 (1042)
Q Consensus 413 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~ 492 (1042)
+++|+|... ++|++|+.|++|+|||+..+.....+
T Consensus 130 ~l~f~P~~~--------------------------------------~iLaSgs~DgtVrIWDl~tg~~~~~l------- 164 (493)
T PTZ00421 130 IVSFHPSAM--------------------------------------NVLASAGADMVVNVWDVERGKAVEVI------- 164 (493)
T ss_pred EEEeCcCCC--------------------------------------CEEEEEeCCCEEEEEECCCCeEEEEE-------
Confidence 888655432 48999999999999999977543222
Q ss_pred ccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCC-eEEEEEe
Q 001628 493 KDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS-IISLNMN 571 (1042)
Q Consensus 493 ~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-V~~l~~s 571 (1042)
..|...|.+++|+|++.+|++++.||.|+|||+....... ++ ..| .+. +..+.|.
T Consensus 165 ---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~--tl---------~~H----------~~~~~~~~~w~ 220 (493)
T PTZ00421 165 ---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS--SV---------EAH----------ASAKSQRCLWA 220 (493)
T ss_pred ---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE--EE---------ecC----------CCCcceEEEEc
Confidence 6788899999999999999999999999999987644321 11 122 233 4567888
Q ss_pred cCCcEEEEEe----cCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEe-CCceEEEEECCCCc
Q 001628 572 RNSQHLAVGS----DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIAT-KDSSVLVLDSDNGN 646 (1042)
Q Consensus 572 pdg~~La~gs----~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s-~Dg~V~vwd~~tg~ 646 (1042)
+++..+++++ .|+.|++||++.....+.... ......+....|++ ++.+|++++ .|+.|++||+.+++
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~~~~~~~d~------d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSALFIPFFDE------DTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCceEEEEEcC------CCCEEEEEEeCCCeEEEEEeeCCc
Confidence 8877766543 479999999986542211110 01233566677888 899999887 49999999999888
Q ss_pred eeeee
Q 001628 647 MLSTN 651 (1042)
Q Consensus 647 ~i~~~ 651 (1042)
++...
T Consensus 294 ~~~~~ 298 (493)
T PTZ00421 294 LTFCS 298 (493)
T ss_pred eEEEe
Confidence 77554
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.6e-20 Score=194.31 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=134.9
Q ss_pred ecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---eeeeeecCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 001628 76 ESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LSHVHVCKEEITSFTIMQHSN-YMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 76 ~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~~~It~v~~sp~~~-~l~sg~~dG~I~vwd~~ 151 (1042)
.++....|++|.|+|....|++++-|++++||-++.+. +..++--..+|.+.+|.|+|. .+++++....++.||+.
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 35666899999999999999999999999999998876 666666678999999999998 99999999999999998
Q ss_pred CCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCc
Q 001628 152 QESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQ 231 (1042)
Q Consensus 152 ~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~ 231 (1042)
+.+......++.. ....+.....+| ++++|++.+..|.|.+....+++.+..+ .-.+.
T Consensus 289 ~ak~~k~~~~~g~-----------e~~~~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~ 346 (514)
T KOG2055|consen 289 TAKVTKLKPPYGV-----------EEKSMERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGV 346 (514)
T ss_pred ccccccccCCCCc-----------ccchhheeEecC--CCCeEEEcccCceEEeehhhhhhhhhee---------eeccE
Confidence 8774222222222 134666788899 8999999999999999999987755442 34678
Q ss_pred eeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 232 VTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 232 I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
|..++|+ .++..|++.+.+|.|.+||+..
T Consensus 347 v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 347 VSDFTFS-SDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred EeeEEEe-cCCcEEEEEcCCceEEEEecCC
Confidence 9999998 8999999999999999999986
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=7.2e-20 Score=209.82 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=161.9
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEE-EecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQAL-LESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~-~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~ 113 (1042)
.+...+.|..|+ ...+++|+.+.+|++|+.. |..... +.+|. ..|..++|...+..|++|+.|.+++|||..++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~-g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF-GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC-CCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 356788999998 6689999999999999987 333334 55665 789999999878899999999999999999998
Q ss_pred -eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 -LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 -~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
...+.+|.+.|.|+.. ...++++|+.|.+|++|++.++.+ ... ...|.++|.++..+ ++
T Consensus 283 C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~--l~l------------~~~h~~~V~~v~~~----~~ 342 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGAC--LNL------------LRGHTGPVNCVQLD----EP 342 (537)
T ss_pred EEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcce--EEE------------eccccccEEEEEec----CC
Confidence 6777889999999765 557788899999999999998762 111 12267899999986 67
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
++++|+.|++|++||+.+++++.. +.+|...|.++.+. .. ..+++|+.|++|++||+.+.
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~s--------l~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKS--------LSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeee--------ecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCch
Confidence 899999999999999998776665 48899999999775 22 99999999999999999973
No 112
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=3.3e-19 Score=204.96 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=139.6
Q ss_pred EEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecC-CCEEEEEeCCCCEEEEEcCCCc---------eeeeeecCCCe
Q 001628 56 ATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLEN-QGILLNVTSTNLIEVWDIDKKR---------LSHVHVCKEEI 124 (1042)
Q Consensus 56 gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~-~~~Lvs~s~dg~I~vWd~~~~~---------~~~~~~h~~~I 124 (1042)
|+.+|.|++|+... .....+.+|. .+|.+++|+|+ +.+|++++.|++|+|||+.++. +..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~-~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT-SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC-CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 55678899998752 2334455554 78999999996 7899999999999999997542 23567899999
Q ss_pred EEEEEeCCCCE-EEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeE
Q 001628 125 TSFTIMQHSNY-MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLI 203 (1042)
Q Consensus 125 t~v~~sp~~~~-l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I 203 (1042)
++++|+|++.. |++|+.||+|++||+.++.. . +.+ .+...|.+++|+| +|.+|++++.|+.|
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~----~~i----------~~~~~V~Slswsp--dG~lLat~s~D~~I 191 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-A----FQI----------NMPKKLSSLKWNI--KGNLLSGTCVGKHM 191 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-E----EEE----------ecCCcEEEEEECC--CCCEEEEEecCCEE
Confidence 99999999875 57899999999999988752 1 111 1235799999999 99999999999999
Q ss_pred EEEeccCCeeEEEeCCcccccccccCCceeEE-----EEEccCCCEEEEEecCC----eEEEEeCCC
Q 001628 204 SLWDIRESKSIFSMGGNVLQSVYHETKQVTSA-----CWACPIGSKVAVGYSNG----EILIWGVPS 261 (1042)
Q Consensus 204 ~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l-----~~~~~~g~~l~sg~~dG----~I~iWd~~~ 261 (1042)
+|||+++++.+..+ .+|...+.+. .|+ +++.+|++++.|+ .|++||++.
T Consensus 192 rIwD~Rsg~~i~tl--------~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 192 HIIDPRKQEIASSF--------HIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEECCCCcEEEEE--------ecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCC
Confidence 99999998766553 5565554332 343 7888999988774 799999985
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.5e-20 Score=182.37 Aligned_cols=310 Identities=12% Similarity=0.146 Sum_probs=206.9
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
+..+.+|.+.|++++|+.+|++|++.+.|++|++|+++.....-. ..+.....+ +..+.+.|.|. ....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---r~~R~nve~-------dhpT~V~FapD-c~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH---RCIRQNVEY-------DHPTRVVFAPD-CKSV 147 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh---hHhhccccC-------CCceEEEECCC-cceE
Confidence 457789999999999999999999999999999999987542110 011111111 24577899992 3444
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcc---------cccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccc
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNV---------LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILN 264 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~---------~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~ 264 (1042)
++.......+++|-+...+- |.. +.....|...+..+-.. .++.+|++++.|..|.+|++... .
T Consensus 148 vv~~~~g~~l~vyk~~K~~d-----G~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lkGq-~ 220 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTD-----GSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLKGQ-L 220 (420)
T ss_pred EEEEccCCEEEEEEeeeccc-----CCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecCCc-e
Confidence 55555677899998764321 111 11113455666666665 67889999999999999999851 0
Q ss_pred cccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCe
Q 001628 265 LKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPC 344 (1042)
Q Consensus 265 ~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 344 (1042)
+....
T Consensus 221 L~~id--------------------------------------------------------------------------- 225 (420)
T KOG2096|consen 221 LQSID--------------------------------------------------------------------------- 225 (420)
T ss_pred eeeec---------------------------------------------------------------------------
Confidence 00000
Q ss_pred eeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCcccc
Q 001628 345 IDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFIL 424 (1042)
Q Consensus 345 ~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~ 424 (1042)
..++..|+ ++
T Consensus 226 -------------------------tnq~~n~~------------------------------------aa--------- 235 (420)
T KOG2096|consen 226 -------------------------TNQSSNYD------------------------------------AA--------- 235 (420)
T ss_pred -------------------------cccccccc------------------------------------ee---------
Confidence 00000111 11
Q ss_pred ccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCC---CceeeeeeccccccccCCCCCCC
Q 001628 425 SSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC---PLFLLILSLKQQSEKDFSLSGIP 501 (1042)
Q Consensus 425 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~---~~~~~l~~l~~~~~~~~~~~~~~ 501 (1042)
.+|+|+++++++----|++|..-- +..+.+.+ ..++.+|...
T Consensus 236 ------------------------------vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r-----vf~LkGH~sa 280 (420)
T KOG2096|consen 236 ------------------------------VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR-----VFSLKGHQSA 280 (420)
T ss_pred ------------------------------eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh-----hheeccchhh
Confidence 567778888888777799998532 22221111 1233899999
Q ss_pred eEEEEEeCCCCEEEEEeccceEEEEEeccCCccccc-ceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEE
Q 001628 502 LTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN-SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 580 (1042)
Q Consensus 502 V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~g 580 (1042)
|++++|++++..+++.+.||.++|||.+-.-...+. .++ .... ..+....+.-..|..||+|+.||++
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L--------k~g~---~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL--------KEGS---APLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh--------hcCC---cchhhcCCCceEEEeCCCCcEEEee
Confidence 999999999999999999999999998742211100 000 1111 1122223444589999999999987
Q ss_pred ecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 581 SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 581 s~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
.. ..+.++..+++... ......|...|++|+|++ +|.++++.+ |..++|+.-
T Consensus 350 ~g-s~l~~~~se~g~~~--~~~e~~h~~~Is~is~~~------~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 350 FG-SDLKVFASEDGKDY--PELEDIHSTTISSISYSS------DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred cC-CceEEEEcccCccc--hhHHHhhcCceeeEEecC------CCcEEeeec-ceeeeeecC
Confidence 75 56899988887765 333344778999999999 999999998 888999873
No 114
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=8e-20 Score=209.47 Aligned_cols=283 Identities=17% Similarity=0.245 Sum_probs=220.1
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC
Q 001628 120 CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 120 h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~ 199 (1042)
+...++|..|. ..++++|+.+++|++|+..+... ...+ ..+|.+.|.++.+.. .++.+++|+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--i~~~-----------l~GH~g~V~~l~~~~--~~~~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--ILTR-----------LVGHFGGVWGLAFPS--GGDKLVSGST 269 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE--EEee-----------ccCCCCCceeEEEec--CCCEEEEEec
Confidence 45678888887 78899999999999999988752 1111 355789999999986 6889999999
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcccccccc
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICK 279 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~ 279 (1042)
|.++++||..+|.+...+ .+|...|.++.. .+..+++|+.|.+|++|++.++..
T Consensus 270 D~t~rvWd~~sg~C~~~l--------~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~--------------- 323 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSL--------QGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC--------------- 323 (537)
T ss_pred CCcEEeEecCCCcEEEEe--------cCCCceEEEEEc---cCceEeeccCCceEEEEeccCcce---------------
Confidence 999999999999988775 688999998854 478889999999999999986310
Q ss_pred ccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCC
Q 001628 280 LNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKP 359 (1042)
Q Consensus 280 l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 359 (1042)
T Consensus 324 -------------------------------------------------------------------------------- 323 (537)
T KOG0274|consen 324 -------------------------------------------------------------------------------- 323 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCC
Q 001628 360 KQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVP 439 (1042)
Q Consensus 360 ~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~ 439 (1042)
+.+ ..+|..+|.++.+.
T Consensus 324 -------------l~l----------------------------~~~h~~~V~~v~~~---------------------- 340 (537)
T KOG0274|consen 324 -------------LNL----------------------------LRGHTGPVNCVQLD---------------------- 340 (537)
T ss_pred -------------EEE----------------------------eccccccEEEEEec----------------------
Confidence 000 01355566666522
Q ss_pred CCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEec
Q 001628 440 PLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQ 519 (1042)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~ 519 (1042)
+.++++|+.||+|++||+....+. ..+ .+|..+|+++.+.+. ..+++|+.
T Consensus 341 -------------------~~~lvsgs~d~~v~VW~~~~~~cl--~sl--------~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 341 -------------------EPLLVSGSYDGTVKVWDPRTGKCL--KSL--------SGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred -------------------CCEEEEEecCceEEEEEhhhceee--eee--------cCCcceEEEEEecCc-ceEEeeee
Confidence 458999999999999999965443 333 889999999988877 89999999
Q ss_pred cceEEEEEeccC-CcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEE
Q 001628 520 SGMVRIFKLKYE-PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLY 598 (1042)
Q Consensus 520 dG~V~vw~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~ 598 (1042)
|++|++||+... .... ++ ..|. +-|..+.+. +++|.+++.||+|++||...+..+.
T Consensus 391 D~~IkvWdl~~~~~c~~--tl---------~~h~----------~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIH--TL---------QGHT----------SLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred ccceEeecCCchhhhhh--hh---------cCCc----------ccccccccc--cceeEeccccccEEEeecccCceee
Confidence 999999999876 3322 23 3443 666666544 8999999999999999999888763
Q ss_pred ecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 599 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 599 ~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
..... |...|+++++. ...+++++.||++.+||+.+|..+...
T Consensus 448 ~~~~~--~~~~v~~l~~~--------~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 448 TLEGR--HVGGVSALALG--------KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeccC--CcccEEEeecC--------cceEEEEecCCeeEEEecccCchhhhh
Confidence 22211 44588888875 467888999999999999998887544
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.1e-19 Score=179.10 Aligned_cols=181 Identities=19% Similarity=0.284 Sum_probs=139.5
Q ss_pred EEEEEEcCCeEEEEecC----C-------CeEEEEe-cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeee
Q 001628 52 ILAAATKDGRIKLYGRH----N-------NTQALLE-SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVH 118 (1042)
Q Consensus 52 ~LA~gs~dg~I~iw~~~----g-------~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~ 118 (1042)
.|++|+....|.=|+.+ + ....+|. ..|..++++|+. ++.++|+|+.|-+|+|||+.... +..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 36677776666555543 0 1111222 224478888876 46789999999999999999877 88889
Q ss_pred ecCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 119 VCKEEITSFTIMQHSN--YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~--~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
.|.+.|+++.|.+... +|++|.+||.|.+|+.....+ ... ...|.+.|+.++.|| .+..-++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~--~~s------------lK~H~~~Vt~lsiHP--S~KLALs 144 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL--LKS------------LKAHKGQVTDLSIHP--SGKLALS 144 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE--eee------------ecccccccceeEecC--CCceEEE
Confidence 9999999999998875 999999999999999988642 111 244677899999999 8999999
Q ss_pred EECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 197 IFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 197 ~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.+.|+.+++||+-.|+.-+.. .-...-+.+.|+ |.|.+|+.+..+ .|-+|.+.+
T Consensus 145 Vg~D~~lr~WNLV~Gr~a~v~---------~L~~~at~v~w~-~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 145 VGGDQVLRTWNLVRGRVAFVL---------NLKNKATLVSWS-PQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred EcCCceeeeehhhcCccceee---------ccCCcceeeEEc-CCCCEEEEEecc-EEEEEeccc
Confidence 999999999999998865542 112233348998 999999998887 588888876
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.9e-19 Score=176.13 Aligned_cols=210 Identities=13% Similarity=0.190 Sum_probs=165.8
Q ss_pred cCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeC--CCC
Q 001628 27 VDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTS--TNL 103 (1042)
Q Consensus 27 ~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~--dg~ 103 (1042)
|.+.+++.- ..+.|.++.|+++|.+|++++.|-.++|||.. |....++..++ -.+..++|......++.++. |.+
T Consensus 4 ~~~ak~f~~-~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 4 FRPAKVFRE-TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccc-CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCc
Confidence 444444444 46789999999999999999999999999987 44455555444 56777899888878888887 899
Q ss_pred EEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 104 IEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 104 I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
|+.-++.+.+ +..+.+|...|+.++.+|-++.+++++.|.+|++||+....+ ...+. -..-..
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-qg~l~---------------~~~~pi 145 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-QGLLN---------------LSGRPI 145 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-ceEEe---------------cCCCcc
Confidence 9999999988 889999999999999999999999999999999999996553 11110 112223
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCe--eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESK--SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~--~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
++|.| .|-.++++...+.|++||++.-. +...+ ........+.+.+.|+ |||..++.+...+.+.+.|.-
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-----~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTF-----SITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeE-----ccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEcc
Confidence 78999 89999999988899999998631 11111 1112457789999998 999999999999999999987
Q ss_pred Cc
Q 001628 261 SI 262 (1042)
Q Consensus 261 ~~ 262 (1042)
+|
T Consensus 218 ~G 219 (311)
T KOG1446|consen 218 DG 219 (311)
T ss_pred CC
Confidence 75
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.9e-19 Score=177.02 Aligned_cols=285 Identities=12% Similarity=0.141 Sum_probs=204.7
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF 198 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~ 198 (1042)
...+.|+++.|+++|.+|+++++|-++++||...+.. ... + . ..+-.|..+.|.- ..+.++.++
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~t---i-~--------skkyG~~~~~Fth--~~~~~i~sS 75 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKT---I-N--------SKKYGVDLACFTH--HSNTVIHSS 75 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeE---e-e--------cccccccEEEEec--CCceEEEcc
Confidence 3567899999999999999999999999999988762 111 1 1 1123555566665 556677776
Q ss_pred C--CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccc
Q 001628 199 R--DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITP 276 (1042)
Q Consensus 199 ~--dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p 276 (1042)
. |.+|+..++.+++.++.| .+|...|.+++.+ |-++.+++++.|++|++||++...
T Consensus 76 tk~d~tIryLsl~dNkylRYF--------~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~------------- 133 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYF--------PGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKK------------- 133 (311)
T ss_pred CCCCCceEEEEeecCceEEEc--------CCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCC-------------
Confidence 5 899999999999888876 7899999999997 899999999999999999998620
Q ss_pred cccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCC
Q 001628 277 ICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDP 356 (1042)
Q Consensus 277 ~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 356 (1042)
...++...+.
T Consensus 134 --------------------------cqg~l~~~~~-------------------------------------------- 143 (311)
T KOG1446|consen 134 --------------------------CQGLLNLSGR-------------------------------------------- 143 (311)
T ss_pred --------------------------CceEEecCCC--------------------------------------------
Confidence 0000000000
Q ss_pred CCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhh
Q 001628 357 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAK 436 (1042)
Q Consensus 357 ~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~ 436 (1042)
- +++
T Consensus 144 ---------------p----------------------------------------i~A--------------------- 147 (311)
T KOG1446|consen 144 ---------------P----------------------------------------IAA--------------------- 147 (311)
T ss_pred ---------------c----------------------------------------cee---------------------
Confidence 0 011
Q ss_pred cCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceee--eeeccccccccCCCCCCCeEEEEEeCCCCEE
Q 001628 437 SVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLL--ILSLKQQSEKDFSLSGIPLTALYYDGTSRVL 514 (1042)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~--l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~L 514 (1042)
+.|.|-++|++.....|++||+..-...| .+.+. .......+.|.|+|+|++|
T Consensus 148 ------------------fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-------~~~~~ew~~l~FS~dGK~i 202 (311)
T KOG1446|consen 148 ------------------FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-------DNDEAEWTDLEFSPDGKSI 202 (311)
T ss_pred ------------------ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-------CCCccceeeeEEcCCCCEE
Confidence 44566688888888899999987532222 22221 2445788999999999999
Q ss_pred EEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCC-CeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 515 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING-SIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 515 asg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
..++..+.+.+.+.-.+.... +| ..+. ..+ --...+|+||++++.+|+.||+|.+|++++
T Consensus 203 LlsT~~s~~~~lDAf~G~~~~--tf---------s~~~--------~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 203 LLSTNASFIYLLDAFDGTVKS--TF---------SGYP--------NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEeCCCcEEEEEccCCcEee--eE---------eecc--------CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 999999999998876554322 22 1111 011 125678999999999999999999999998
Q ss_pred CeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 594 PTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 594 ~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+..+ +++. +.+++.++.|+| .+...++.+..+.+|=..
T Consensus 264 g~~v~~~~~~----~~~~~~~~~fnP--------~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 264 GKKVAVLRGP----NGGPVSCVRFNP--------RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEeeEecCC----CCCCccccccCC--------ceeeeeecCceEEEEecc
Confidence 8776 3332 355899999998 344444456788889644
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=6e-20 Score=200.66 Aligned_cols=280 Identities=16% Similarity=0.238 Sum_probs=212.8
Q ss_pred CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce---eeeeecCCCeEE-EEEeCCC-CEEEEEeCCCc
Q 001628 70 NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL---SHVHVCKEEITS-FTIMQHS-NYMLLGDTAGK 144 (1042)
Q Consensus 70 ~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~---~~~~~h~~~It~-v~~sp~~-~~l~sg~~dG~ 144 (1042)
++.+.+.+|. ..|+.+++.++. ++++++.|++++||+-..++. ..+.+|.+.|.+ +++.+.. -.+++|+.|++
T Consensus 5 ~ls~~l~gH~-~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHK-SDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCc-cchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3556666766 556778877766 899999999999999887773 346678888877 7777633 45999999999
Q ss_pred EEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccc
Q 001628 145 ISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQS 224 (1042)
Q Consensus 145 I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~ 224 (1042)
|.+|...+.. |+.+ ..+|...|.+++..- ++. +++|+.|.++++|-..+- ...
T Consensus 83 i~v~~~~~~~------P~~~--------LkgH~snVC~ls~~~--~~~-~iSgSWD~TakvW~~~~l----------~~~ 135 (745)
T KOG0301|consen 83 IIVFKLSQAE------PLYT--------LKGHKSNVCSLSIGE--DGT-LISGSWDSTAKVWRIGEL----------VYS 135 (745)
T ss_pred EEEEecCCCC------chhh--------hhccccceeeeecCC--cCc-eEecccccceEEecchhh----------hcc
Confidence 9999998865 2221 355788999998764 455 999999999999987642 223
Q ss_pred ccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCe
Q 001628 225 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKAS 304 (1042)
Q Consensus 225 ~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~ 304 (1042)
+.+|...|+++... |++ .++||+.|.+|++|.-.+.
T Consensus 136 l~gH~asVWAv~~l-~e~-~~vTgsaDKtIklWk~~~~------------------------------------------ 171 (745)
T KOG0301|consen 136 LQGHTASVWAVASL-PEN-TYVTGSADKTIKLWKGGTL------------------------------------------ 171 (745)
T ss_pred cCCcchheeeeeec-CCC-cEEeccCcceeeeccCCch------------------------------------------
Confidence 58999999999998 776 8999999999999987541
Q ss_pred EEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceee
Q 001628 305 RLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERY 384 (1042)
Q Consensus 305 ~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~ 384 (1042)
+..
T Consensus 172 --------------------------------------------------------------------l~t--------- 174 (745)
T KOG0301|consen 172 --------------------------------------------------------------------LKT--------- 174 (745)
T ss_pred --------------------------------------------------------------------hhh---------
Confidence 001
Q ss_pred eccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEE
Q 001628 385 LLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFIT 464 (1042)
Q Consensus 385 ~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 464 (1042)
+.+|...|..+++.++. -+++
T Consensus 175 -------------------f~gHtD~VRgL~vl~~~----------------------------------------~flS 195 (745)
T KOG0301|consen 175 -------------------FSGHTDCVRGLAVLDDS----------------------------------------HFLS 195 (745)
T ss_pred -------------------hccchhheeeeEEecCC----------------------------------------CeEe
Confidence 12566666666655443 3889
Q ss_pred EeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecc
Q 001628 465 GHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTG 544 (1042)
Q Consensus 465 g~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~ 544 (1042)
++.||.||+|++.+..+... .+|..-|.+++..++++.++++++|++++||+... ... .+
T Consensus 196 csNDg~Ir~w~~~ge~l~~~-----------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e--~~q--~I----- 255 (745)
T KOG0301|consen 196 CSNDGSIRLWDLDGEVLLEM-----------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE--CVQ--VI----- 255 (745)
T ss_pred ecCCceEEEEeccCceeeee-----------eccceEEEEEEecCCCCeEEEecCCceEEEeecCc--eEE--EE-----
Confidence 99999999999977655322 68899999999999999999999999999999762 211 11
Q ss_pred cccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 545 SKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 545 ~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
..+. ..|.++.+-++|. +++|+.||.||||..+.
T Consensus 256 ----~lPt----------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 ----TLPT----------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ----ecCc----------cceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 1111 4788888876665 67888999999997763
No 119
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=2.9e-19 Score=205.47 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=115.0
Q ss_pred EeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcccc
Q 001628 98 VTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQH-SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVS 175 (1042)
Q Consensus 98 ~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~-~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~ 175 (1042)
|+.++.|++|+..... +..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+........... -+.. ....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~--~p~~----~L~g 123 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK--DPQC----ILKG 123 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc--cceE----Eeec
Confidence 4567889999987765 6677899999999999997 78999999999999999976431000000 0000 0234
Q ss_pred CCCCEEEEEEccCCCCCe-EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeE
Q 001628 176 GDPAVINILPQPTAESKR-ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEI 254 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~-lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I 254 (1042)
|...|.+++|+| ++.. +++++.|+.|+|||+.+++.+..+ .+...|.+++|+ ++|..|++++.|+.|
T Consensus 124 H~~~V~sVaf~P--~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---------~~~~~V~Slsws-pdG~lLat~s~D~~I 191 (568)
T PTZ00420 124 HKKKISIIDWNP--MNYYIMCSSGFDSFVNIWDIENEKRAFQI---------NMPKKLSSLKWN-IKGNLLSGTCVGKHM 191 (568)
T ss_pred CCCcEEEEEECC--CCCeEEEEEeCCCeEEEEECCCCcEEEEE---------ecCCcEEEEEEC-CCCCEEEEEecCCEE
Confidence 578999999999 6654 578999999999999998765542 245679999998 999999999999999
Q ss_pred EEEeCCCc
Q 001628 255 LIWGVPSI 262 (1042)
Q Consensus 255 ~iWd~~~~ 262 (1042)
++||++++
T Consensus 192 rIwD~Rsg 199 (568)
T PTZ00420 192 HIIDPRKQ 199 (568)
T ss_pred EEEECCCC
Confidence 99999874
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=179.39 Aligned_cols=196 Identities=13% Similarity=0.163 Sum_probs=161.3
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV 117 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~ 117 (1042)
...|+.+.|+|....|++++-||.+++|+.+ .....+...+..|+.+.+|.++. .+++|+.||.|+.+|+.++....+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcceee
Confidence 3579999999999999999999999999998 55555666677899999999865 799999999999999999999999
Q ss_pred eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 118 HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 118 ~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
..|...|.|+..++....+++|+.|++|++||........ .......|.++... +++|++|
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---------------~~d~~kkVy~~~v~----g~~LvVg 151 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---------------TFDQGKKVYCMDVS----GNRLVVG 151 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---------------ccccCceEEEEecc----CCEEEEe
Confidence 9999999999999999999999999999999988643100 01123478777764 7899999
Q ss_pred ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 198 FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+.|..|.+||+++-...+. ..-..-.-.+.|++.. |++.-+++++-||.|.+=.++.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q------~reS~lkyqtR~v~~~-pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQ------RRESSLKYQTRCVALV-PNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred ecCceEEEEEcccccchhh------hccccceeEEEEEEEe-cCCCceEEEeecceEEEEccCC
Confidence 9999999999998542221 1113345678899998 8999999999999998866654
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=183.64 Aligned_cols=308 Identities=12% Similarity=0.132 Sum_probs=231.3
Q ss_pred EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
.+.+|. ..|..++-...+..+.+++.|.+.+||.++++. +....+|.+.|.|+.|++.+.++++++.|++-.||...-
T Consensus 143 e~~GHk-DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 143 ELEGHK-DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhcccc-cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 344554 678888887788889999999999999999998 888899999999999999999999999999999998321
Q ss_pred Ccc--------------ceeeeeeeccc----ccccCc--------cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEE
Q 001628 153 ESS--------------QIVKMKYIIPL----SASHGN--------EVSGDPAVINILPQPTAESKRILIIFRDGLISLW 206 (1042)
Q Consensus 153 ~~~--------------~~~~~~~~ip~----~~~~~~--------~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vW 206 (1042)
.-. ......-..+. ....++ ..+|.+.|.++.|-. .+..+++++.|.+-.+|
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTASWDRTANLW 299 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeeeccccceee
Confidence 100 00000000000 000111 235677889999987 79999999999999999
Q ss_pred eccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCC
Q 001628 207 DIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKL 286 (1042)
Q Consensus 207 d~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 286 (1042)
|++++.++.. +.+|...++-++-+ |...++++.+.|.+.++||++..
T Consensus 300 DVEtge~v~~--------LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFRea------------------------ 346 (481)
T KOG0300|consen 300 DVETGEVVNI--------LTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREA------------------------ 346 (481)
T ss_pred eeccCceecc--------ccCcchhccccccC-CcceEEEEeccCceeEeccchhh------------------------
Confidence 9999776554 58899999999887 99999999999999999999852
Q ss_pred CCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEE
Q 001628 287 DKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLL 366 (1042)
Q Consensus 287 ~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~v 366 (1042)
|.
T Consensus 347 ----I~-------------------------------------------------------------------------- 348 (481)
T KOG0300|consen 347 ----IQ-------------------------------------------------------------------------- 348 (481)
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred EecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCc
Q 001628 367 LGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFET 446 (1042)
Q Consensus 367 l~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 446 (1042)
.+.+| .+|...||.+.|..+.
T Consensus 349 -----sV~VF----------------------------QGHtdtVTS~vF~~dd-------------------------- 369 (481)
T KOG0300|consen 349 -----SVAVF----------------------------QGHTDTVTSVVFNTDD-------------------------- 369 (481)
T ss_pred -----eeeee----------------------------cccccceeEEEEecCC--------------------------
Confidence 01122 2777888888765443
Q ss_pred CCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE
Q 001628 447 KLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 447 ~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw 526 (1042)
.+++|+.|.+|++||+.+-. .++..+. ...++..++.+..+..+|.--.+..|++|
T Consensus 370 --------------~vVSgSDDrTvKvWdLrNMR-splATIR---------tdS~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 370 --------------RVVSGSDDRTVKVWDLRNMR-SPLATIR---------TDSPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred --------------ceeecCCCceEEEeeecccc-Ccceeee---------cCCccceeEeecCCceEEeccCCceEEEE
Confidence 48899999999999998642 3344332 23688999999999999999999999999
Q ss_pred EeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC--cEEEEEecCCcEEEEeccCCe
Q 001628 527 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS--QHLAVGSDQGYVYLLDTEGPT 595 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg--~~La~gs~dg~V~vwD~~~~~ 595 (1042)
|+++..... +|...-..|..-|+|++|..+- .-|.+++-|..+.=|.+..+.
T Consensus 426 DlnG~RlaR-----------------lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 426 DLNGNRLAR-----------------LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ecCCCcccc-----------------CCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 999876643 1111222344779999998643 347788889999999987654
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-20 Score=179.79 Aligned_cols=266 Identities=16% Similarity=0.275 Sum_probs=196.8
Q ss_pred CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEcc-CCCEEEEEecCCeE
Q 001628 176 GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACP-IGSKVAVGYSNGEI 254 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~-~g~~l~sg~~dG~I 254 (1042)
|...|..+...- -|.+|++++.|++|+|+.++.+.. .+.+..+.+|.++|+.++|.+| -|.+|++++.||.|
T Consensus 10 H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 10 HEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 455666666665 689999999999999999987552 1345677999999999999855 59999999999999
Q ss_pred EEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeE
Q 001628 255 LIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTT 334 (1042)
Q Consensus 255 ~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~ 334 (1042)
.||.-..++ |.
T Consensus 83 IiWke~~g~--------------------------------w~------------------------------------- 93 (299)
T KOG1332|consen 83 IIWKEENGR--------------------------------WT------------------------------------- 93 (299)
T ss_pred EEEecCCCc--------------------------------hh-------------------------------------
Confidence 999987641 11
Q ss_pred EEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEE
Q 001628 335 KLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAM 414 (1042)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~ 414 (1042)
++ .....|...|+++
T Consensus 94 -------------------------------------k~----------------------------~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 94 -------------------------------------KA----------------------------YEHAAHSASVNSV 108 (299)
T ss_pred -------------------------------------hh----------------------------hhhhhhcccceee
Confidence 00 1122566777777
Q ss_pred EEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeecccccccc
Q 001628 415 KLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKD 494 (1042)
Q Consensus 415 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~ 494 (1042)
++.|. ..+-+|++++.||.|.+.+....-.-.. ...
T Consensus 109 ~waph-------------------------------------eygl~LacasSDG~vsvl~~~~~g~w~t-------~ki 144 (299)
T KOG1332|consen 109 AWAPH-------------------------------------EYGLLLACASSDGKVSVLTYDSSGGWTT-------SKI 144 (299)
T ss_pred ccccc-------------------------------------ccceEEEEeeCCCcEEEEEEcCCCCccc-------hhh
Confidence 75433 3345899999999999998775411000 112
Q ss_pred CCCCCCCeEEEEEeCC---C-----------CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEee
Q 001628 495 FSLSGIPLTALYYDGT---S-----------RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMK 560 (1042)
Q Consensus 495 ~~~~~~~V~~l~fsp~---~-----------~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 560 (1042)
...|...|++++|+|. + +.|++|+.|..|+||+++......+.++ ..|.
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l---------~~H~-------- 207 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL---------EGHK-------- 207 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh---------hhcc--------
Confidence 2688899999999997 3 4599999999999999998755444444 4555
Q ss_pred cCCCeEEEEEecCC----cEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCce
Q 001628 561 INGSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSS 636 (1042)
Q Consensus 561 ~~~~V~~l~~spdg----~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~ 636 (1042)
+-|+.++|+|.- .+||++++||+|.||-.+...--++..+...-...+.++.||+ .|++|++++.|..
T Consensus 208 --dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~------sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 208 --DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL------SGNILAVSGGDNK 279 (299)
T ss_pred --hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec------cccEEEEecCCcE
Confidence 999999999975 3699999999999997763211122333222344899999999 9999999999999
Q ss_pred EEEEECC-CCceeeee
Q 001628 637 VLVLDSD-NGNMLSTN 651 (1042)
Q Consensus 637 V~vwd~~-tg~~i~~~ 651 (1042)
|.+|... .|+.+...
T Consensus 280 vtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 280 VTLWKENVDGKWEEVG 295 (299)
T ss_pred EEEEEeCCCCcEEEcc
Confidence 9999743 25655443
No 123
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.9e-19 Score=173.52 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=207.8
Q ss_pred CcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCcc
Q 001628 80 AVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESS 155 (1042)
Q Consensus 80 ~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~ 155 (1042)
...|.+++|.-+|..|++++.|+++.||+++..+ -....+|.+.|-.++|+|.. +.+++++.|.+|++||+...++
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 3678899999999999999999999999998876 23556799899999998765 7899999999999999998763
Q ss_pred ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEE
Q 001628 156 QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSA 235 (1042)
Q Consensus 156 ~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l 235 (1042)
.. .. ...+.=.-+.|+| ++++++.+..|..|.+.|.++.+.... ......+.-+
T Consensus 100 ~~-~i--------------~~~~eni~i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~---------~~~~~e~ne~ 153 (313)
T KOG1407|consen 100 TA-RI--------------ETKGENINITWSP--DGEYIAVGNKDDRITFIDARTYKIVNE---------EQFKFEVNEI 153 (313)
T ss_pred EE-Ee--------------eccCcceEEEEcC--CCCEEEEecCcccEEEEEecccceeeh---------hcccceeeee
Confidence 11 11 1123445589999 999999999999999999998775544 3345567778
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccC
Q 001628 236 CWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFV 315 (1042)
Q Consensus 236 ~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~ 315 (1042)
+|+ -+++.|......|.|.|....+. +|+
T Consensus 154 ~w~-~~nd~Fflt~GlG~v~ILsypsL--------------------------kpv------------------------ 182 (313)
T KOG1407|consen 154 SWN-NSNDLFFLTNGLGCVEILSYPSL--------------------------KPV------------------------ 182 (313)
T ss_pred eec-CCCCEEEEecCCceEEEEecccc--------------------------ccc------------------------
Confidence 888 67777777677778877666541 111
Q ss_pred CCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCC
Q 001628 316 SMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPS 395 (1042)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~ 395 (1042)
T Consensus 183 -------------------------------------------------------------------------------- 182 (313)
T KOG1407|consen 183 -------------------------------------------------------------------------------- 182 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEe
Q 001628 396 APKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWD 475 (1042)
Q Consensus 396 l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd 475 (1042)
..+..|.+.-.|+. +.|+|+++++|+.|-.+-+||
T Consensus 183 ------~si~AH~snCicI~---------------------------------------f~p~GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 183 ------QSIKAHPSNCICIE---------------------------------------FDPDGRYFATGSADALVSLWD 217 (313)
T ss_pred ------cccccCCcceEEEE---------------------------------------ECCCCceEeeccccceeeccC
Confidence 11225555566666 455566999999999999999
Q ss_pred CCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeee
Q 001628 476 VSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 555 (1042)
Q Consensus 476 ~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 555 (1042)
++.-.+... +.-+.-+|..|+|+.+|++||+|++|..|-|=.+.++.... . .++
T Consensus 218 ~~ELiC~R~----------isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~----e--------I~~---- 271 (313)
T KOG1407|consen 218 VDELICERC----------ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW----E--------IPC---- 271 (313)
T ss_pred hhHhhhhee----------eccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE----E--------eec----
Confidence 986433222 25667899999999999999999999999888877654422 1 233
Q ss_pred EEEeecCCCeEEEEEecCCcEEEEEecCC
Q 001628 556 VKVMKINGSIISLNMNRNSQHLAVGSDQG 584 (1042)
Q Consensus 556 ~~~~~~~~~V~~l~~spdg~~La~gs~dg 584 (1042)
.++...++|+|...+||-+..|.
T Consensus 272 ------~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 272 ------EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ------cCCceeEEecCCCceeeEEecCC
Confidence 38999999999999999887763
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.3e-20 Score=181.94 Aligned_cols=206 Identities=17% Similarity=0.221 Sum_probs=162.5
Q ss_pred CCcCceeeeee-cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCC--EEEEEeCC
Q 001628 25 SDVDPRLVFHY-GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQG--ILLNVTST 101 (1042)
Q Consensus 25 ~~~~~~~~~~~-G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~--~Lvs~s~d 101 (1042)
..+.+..+|+| .|.++++|+|.+ ++++|+|+.|-+|+|||...+.+.-....+...|+++.|.++-. .|++|++|
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred cceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence 34555556664 788999999987 88999999999999999984443333334468999999999765 89999999
Q ss_pred CCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCE
Q 001628 102 NLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV 180 (1042)
Q Consensus 102 g~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V 180 (1042)
|.|.+|+...=. +..+..|.+.|+.++++|.+++-++-+.|+.++.||+-++......- + ....
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~---L------------~~~a 171 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN---L------------KNKA 171 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec---c------------CCcc
Confidence 999999988766 78889999999999999999999999999999999998876322111 0 1133
Q ss_pred EEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 181 INILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 181 ~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
+.+.|+| .|.+++++..++ |-+|.+++...... ......+.|+.|. ++..|++|..|+.|.+||.+
T Consensus 172 t~v~w~~--~Gd~F~v~~~~~-i~i~q~d~A~v~~~---------i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 172 TLVSWSP--QGDHFVVSGRNK-IDIYQLDNASVFRE---------IENPKRILCATFL--DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eeeEEcC--CCCEEEEEeccE-EEEEecccHhHhhh---------hhccccceeeeec--CCceEEEecCCceEEEeccC
Confidence 3499999 899888888765 45999887553332 2223567778775 89999999999999999988
Q ss_pred C
Q 001628 261 S 261 (1042)
Q Consensus 261 ~ 261 (1042)
+
T Consensus 238 s 238 (362)
T KOG0294|consen 238 S 238 (362)
T ss_pred C
Confidence 6
No 125
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.1e-20 Score=202.51 Aligned_cols=341 Identities=13% Similarity=0.186 Sum_probs=238.4
Q ss_pred cCCCEEEEEeCCCCEEEEEcCCCc-------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee
Q 001628 90 ENQGILLNVTSTNLIEVWDIDKKR-------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY 162 (1042)
Q Consensus 90 ~~~~~Lvs~s~dg~I~vWd~~~~~-------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~ 162 (1042)
|++++|.+|+.||.|++|+..... ...+..|..+|..++...+++-|++++.|-+|++|+...... .. + .
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-~c-~-s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-FC-M-S 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-hh-H-h
Confidence 467789999999999999976432 456778999999999999999999999999999999877630 00 0 0
Q ss_pred ecccccccCccccCCCCEEEEEE-ccCCCCCeEEEEECCCeEEEEeccCCe--eEEEeCCccccccc-ccCCceeEEEEE
Q 001628 163 IIPLSASHGNEVSGDPAVINILP-QPTAESKRILIIFRDGLISLWDIRESK--SIFSMGGNVLQSVY-HETKQVTSACWA 238 (1042)
Q Consensus 163 ~ip~~~~~~~~~~~~~~V~~v~~-~p~~d~~~lls~~~dg~I~vWd~~~~~--~~~~~~g~~~~~~~-~~~~~I~~l~~~ 238 (1042)
. ...|...|.|+++ -+ +...+++|+-|+.|.+||++++. .+..+......... ++...|.+++-.
T Consensus 112 t---------ir~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 112 T---------IRTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred h---------hhcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 1 3457889999999 65 88899999999999999999873 33333222222223 788999999998
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCc
Q 001628 239 CPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMN 318 (1042)
Q Consensus 239 ~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~ 318 (1042)
+.|..|++|+..+.|++||..+...
T Consensus 181 -~t~t~ivsGgtek~lr~wDprt~~k------------------------------------------------------ 205 (735)
T KOG0308|consen 181 -QTGTIIVSGGTEKDLRLWDPRTCKK------------------------------------------------------ 205 (735)
T ss_pred -CcceEEEecCcccceEEeccccccc------------------------------------------------------
Confidence 8999999999999999999887310
Q ss_pred cEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCc
Q 001628 319 LLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPK 398 (1042)
Q Consensus 319 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~ 398 (1042)
T Consensus 206 -------------------------------------------------------------------------------- 205 (735)
T KOG0308|consen 206 -------------------------------------------------------------------------------- 205 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCC
Q 001628 399 EVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSC 478 (1042)
Q Consensus 399 ~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~ 478 (1042)
.+.+.+|...|.++.. ..+|..+++++.||+||+||+..
T Consensus 206 --imkLrGHTdNVr~ll~---------------------------------------~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 206 --IMKLRGHTDNVRVLLV---------------------------------------NDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred --eeeeeccccceEEEEE---------------------------------------cCCCCeEeecCCCceEEeeeccc
Confidence 0122366666776663 34555899999999999999998
Q ss_pred CceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEE
Q 001628 479 PLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKV 558 (1042)
Q Consensus 479 ~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 558 (1042)
..+...+ ..|...|+++..+|+-..+.+|+.||.|..=++....... .+
T Consensus 245 QrCl~T~----------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t---------------------li 293 (735)
T KOG0308|consen 245 QRCLATY----------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST---------------------LI 293 (735)
T ss_pred cceeeeE----------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe---------------------Ee
Confidence 7665444 6788889999999999999999999999888876642211 11
Q ss_pred eecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE-Eecccccc---cCCCeEEEEEEeee-cCC----------C
Q 001628 559 MKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHIASD---ISSGIVSLQFETCS-LQG----------F 623 (1042)
Q Consensus 559 ~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~-~~~~~~~~---~~~~V~sl~fs~~~-~~~----------~ 623 (1042)
.....+|..+....+..-+=+++.|+.|.=|-.+-..-+ ..+.+... ...++......|.. ..| .
T Consensus 294 ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~ 373 (735)
T KOG0308|consen 294 CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLN 373 (735)
T ss_pred ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhc
Confidence 122355666665543333456777888888865422111 00000000 00112221111110 011 1
Q ss_pred CceEEEEEeCCceEEEEECCCCceeeee
Q 001628 624 EKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 624 ~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
+.+.++|-...|.+.+||+-.+..+..+
T Consensus 374 dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 374 DKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred CcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 7899999999999999998766666444
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.3e-20 Score=177.47 Aligned_cols=267 Identities=14% Similarity=0.178 Sum_probs=196.7
Q ss_pred CCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc----eeeeeecCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEccC
Q 001628 79 EAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR----LSHVHVCKEEITSFTIMQ--HSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~----~~~~~~h~~~It~v~~sp--~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
|...|..+...--|.+|++++.|++|+|+..+... +.++.+|.++|+-++|-. .|.+|++++-||.|.||+-.+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 33556666666678899999999999999987643 678999999999999976 789999999999999999888
Q ss_pred CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCce
Q 001628 153 ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 153 ~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I 232 (1042)
++ ..+. +. ...|...|++++|.|..-|-.|++++.||.|.|.+.++... -...+....|.-.|
T Consensus 90 g~--w~k~---------~e-~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-----w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 90 GR--WTKA---------YE-HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-----WTTSKIVFAHEIGV 152 (299)
T ss_pred Cc--hhhh---------hh-hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-----ccchhhhhcccccc
Confidence 75 2111 11 23468899999999976688899999999999999887410 01123346677888
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEeccc
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGAS 312 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~ 312 (1042)
++++|. |.. .+|.+ +..
T Consensus 153 nsVswa-pa~-------~~g~~----~~~--------------------------------------------------- 169 (299)
T KOG1332|consen 153 NSVSWA-PAS-------APGSL----VDQ--------------------------------------------------- 169 (299)
T ss_pred ceeeec-CcC-------CCccc----ccc---------------------------------------------------
Confidence 888886 421 11100 000
Q ss_pred ccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCC
Q 001628 313 DFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRS 392 (1042)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~ 392 (1042)
+
T Consensus 170 ----------------------------------------------------------------------------~--- 170 (299)
T KOG1332|consen 170 ----------------------------------------------------------------------------G--- 170 (299)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred CCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEE
Q 001628 393 PPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAIN 472 (1042)
Q Consensus 393 ~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~Ir 472 (1042)
....-..|++|+.|..|+
T Consensus 171 --------------------------------------------------------------~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 171 --------------------------------------------------------------PAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred --------------------------------------------------------------cccccceeeccCCcccee
Confidence 000012689999999999
Q ss_pred EEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC----CEEEEEeccceEEEEEeccCCcccccceeeecccccC
Q 001628 473 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS----RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG 548 (1042)
Q Consensus 473 iWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~----~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g 548 (1042)
||+....... + +..+.+|..-|..++|+|.- .++|+++.||+|.||........-+.++
T Consensus 189 iW~~~~~~w~----~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl--------- 251 (299)
T KOG1332|consen 189 IWKFDSDSWK----L----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL--------- 251 (299)
T ss_pred eeecCCcchh----h----hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---------
Confidence 9999886322 1 33358999999999999975 5799999999999999873322111122
Q ss_pred ccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEecc
Q 001628 549 NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 549 ~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~ 592 (1042)
+...+..+..+.||..|++||+++.|..|.+|.-.
T Consensus 252 ---------l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 252 ---------LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---------cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 11224789999999999999999999999999654
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.8e-19 Score=188.92 Aligned_cols=289 Identities=15% Similarity=0.207 Sum_probs=217.5
Q ss_pred eeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 117 VHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 117 ~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
...|..-|.+++++...+++++|+. |.|+|||+.....+ . |..... ....+.-+.++...| |+..|++
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k---~----PvsqLd--cl~rdnyiRSckL~p--dgrtLiv 482 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK---S----PVSQLD--CLNRDNYIRSCKLLP--DGRTLIV 482 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC---C----cccccc--ccCcccceeeeEecC--CCceEEe
Confidence 3457788889999999999999985 67999999876411 1 111000 122356788999999 9999999
Q ss_pred EECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccc
Q 001628 197 IFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITP 276 (1042)
Q Consensus 197 ~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p 276 (1042)
|+.-.++.|||+.....-. -..+........+++.+ ||.+...++..||.|.|||+.+..
T Consensus 483 GGeastlsiWDLAapTpri------kaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~------------- 542 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRI------KAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQT------------- 542 (705)
T ss_pred ccccceeeeeeccCCCcch------hhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccce-------------
Confidence 9999999999998743110 01112223445567776 999999999999999999998720
Q ss_pred cccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCC
Q 001628 277 ICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDP 356 (1042)
Q Consensus 277 ~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 356 (1042)
T Consensus 543 -------------------------------------------------------------------------------- 542 (705)
T KOG0639|consen 543 -------------------------------------------------------------------------------- 542 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhh
Q 001628 357 NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAK 436 (1042)
Q Consensus 357 ~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~ 436 (1042)
.+ ..+++|...+.|+.
T Consensus 543 -----------------~V--------------------------rqfqGhtDGascId--------------------- 558 (705)
T KOG0639|consen 543 -----------------LV--------------------------RQFQGHTDGASCID--------------------- 558 (705)
T ss_pred -----------------ee--------------------------ecccCCCCCceeEE---------------------
Confidence 00 11236666777777
Q ss_pred cCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEE
Q 001628 437 SVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVS 516 (1042)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Las 516 (1042)
++++|..|.||+-|.+||-||+..+....- ......|.++.+||++.+||+
T Consensus 559 ------------------is~dGtklWTGGlDntvRcWDlregrqlqq-----------hdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 559 ------------------ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----------HDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ------------------ecCCCceeecCCCccceeehhhhhhhhhhh-----------hhhhhhheecccCCCccceee
Confidence 445555899999999999999987632211 122378999999999999999
Q ss_pred EeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeE
Q 001628 517 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 596 (1042)
Q Consensus 517 g~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~ 596 (1042)
|-+++.|.|-....... ..+..|...|.+|.|++.|+++++.+.|..+..|..--+.-
T Consensus 610 GMens~vevlh~skp~k----------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKPEK----------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred ecccCcEEEEecCCccc----------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence 99999998887764332 22333459999999999999999999999999999987777
Q ss_pred EEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 597 LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 597 ~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
+|+..- .++|.+...|. |..+++||+.|....||.+
T Consensus 668 iFqskE----~SsVlsCDIS~------ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 IFQSKE----SSSVLSCDISF------DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeccc----cCcceeeeecc------CceEEEecCCCcceEEEEE
Confidence 766553 45999999998 9999999999998888864
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=196.24 Aligned_cols=214 Identities=15% Similarity=0.271 Sum_probs=169.8
Q ss_pred ceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCC-eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 29 PRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNN-TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 29 ~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~-~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
.|...+|+|...-+.++|+|+|..|.+++.||.|++|+.... .+.-........|.++ ..+..+|++++.+++|.++
T Consensus 4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~i--a~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSI--ACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEE--eecccceEEeeccceEEEe
Confidence 356678999999999999999999999999999999987621 1111111133455444 4455589999999999999
Q ss_pred EcCCCcee-eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 108 DIDKKRLS-HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 108 d~~~~~~~-~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
....+... -+....-++++++|+.+|.+++.|++|-.|++.+........ . ..+|+++|.++.|+
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--~------------lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--V------------LRGHDAPVLQLSYD 147 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--e------------ecccCCceeeeeEc
Confidence 99998844 555677789999999999999999999999999998865211 1 34578999999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
| +++.|++...||.|++||+.++.....+++-....-......++.++|+ |+|..|+....|+.|.+++..+
T Consensus 148 p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 148 P--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred C--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCC
Confidence 9 8999999999999999999998877665433222222235667789998 9999999999999999999876
No 129
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.1e-17 Score=180.09 Aligned_cols=206 Identities=11% Similarity=0.164 Sum_probs=139.8
Q ss_pred eecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecCCCeEE------EEecCCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 34 HYGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRHNNTQA------LLESSEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~g~~~~------~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
.++|...|+.+.|+|- ..+||+|+.|..|+||.+.-+... ...++....|.+|.|+|...-|+..+..|+++|
T Consensus 75 l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i 154 (1012)
T KOG1445|consen 75 LAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYI 154 (1012)
T ss_pred eecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEE
Confidence 3678889999999994 468999999999999998721211 223556689999999995444555567799999
Q ss_pred EEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 107 WDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 107 Wd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
||+.+++ ...+.+|...|.+..|+.||..|++.+.|..|+|||-..... .+.....|+. -.=..+.|
T Consensus 155 ~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-------piQ~te~H~~-----~rdsRv~w 222 (1012)
T KOG1445|consen 155 TDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-------PIQTTEGHGG-----MRDSRVLW 222 (1012)
T ss_pred EEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC-------cccccccccc-----chhheeee
Confidence 9999988 888999999999999999999999999999999999876531 1111122211 12233567
Q ss_pred ccCCCCCeEEEEECC----CeEEEEeccCCeeEEEeCCcccccccc-cCCceeEEEEEccCCCE-EEEEecCCeEEEEeC
Q 001628 186 QPTAESKRILIIFRD----GLISLWDIRESKSIFSMGGNVLQSVYH-ETKQVTSACWACPIGSK-VAVGYSNGEILIWGV 259 (1042)
Q Consensus 186 ~p~~d~~~lls~~~d----g~I~vWd~~~~~~~~~~~g~~~~~~~~-~~~~I~~l~~~~~~g~~-l~sg~~dG~I~iWd~ 259 (1042)
.- +-.+|++.+-+ ..|++||...-. ....++.. ....|.--.|. ||... |++|-.+..|..+.+
T Consensus 223 ~G--n~~rlisTGF~~~R~reV~~~Dtr~f~-------~p~~tleld~stGvLiPl~D-pDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 223 AG--NWERLISTGFTTKRIREVRAYDTRKFG-------APVHTLELDSSTGVLIPLYD-PDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred cc--chhhhhhcccchhhheeeeeeeccccC-------CcceeEEeecccceEeeeec-CCCceEEEecCCcceEEEEEe
Confidence 64 44466666533 568899987521 11111111 12233333354 56544 455556777887776
Q ss_pred CC
Q 001628 260 PS 261 (1042)
Q Consensus 260 ~~ 261 (1042)
..
T Consensus 293 ~d 294 (1012)
T KOG1445|consen 293 QD 294 (1012)
T ss_pred cC
Confidence 54
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=6e-19 Score=184.92 Aligned_cols=215 Identities=15% Similarity=0.208 Sum_probs=170.1
Q ss_pred CcCceeeeeecccCceEEEEEcCCC-CEEEEEEcCCeEEEEecC---------C--CeEEEEecCCCcceEEEEEecC-C
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQ-KILAAATKDGRIKLYGRH---------N--NTQALLESSEAVSTKFLQFLEN-Q 92 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~-~~LA~gs~dg~I~iw~~~---------g--~~~~~~~~~~~~~v~~l~fs~~-~ 92 (1042)
.-.+++...+-|++.|.-+.|=|.. .++|+++..+.|.|||.. | .....+.+|.+. -..|.|++. .
T Consensus 112 ~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsWn~~~~ 190 (422)
T KOG0264|consen 112 SGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSWNRQQE 190 (422)
T ss_pred ccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-ccccccccccc
Confidence 3355666678889999999999876 477888999999999975 1 122356666653 344889884 4
Q ss_pred CEEEEEeCCCCEEEEEcCCCc--------eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeee
Q 001628 93 GILLNVTSTNLIEVWDIDKKR--------LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYI 163 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~--------~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ 163 (1042)
..|++++.|++|++||+.... ...+.+|...|..++|++-. ..+++.++|+.+.|||.++... . ....
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-~--~~~~ 267 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-K--PSHS 267 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-C--Cccc
Confidence 589999999999999986532 45677899999999999877 6677889999999999986321 0 1000
Q ss_pred cccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCC
Q 001628 164 IPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGS 243 (1042)
Q Consensus 164 ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~ 243 (1042)
...|.+.|.|++|+|. ++..|++|+.|++|.+||+++-+ ..+..+.+|...|.++.|++-...
T Consensus 268 ---------~~ah~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~-------~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 268 ---------VKAHSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNLN-------KPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred ---------ccccCCceeEEEeCCC-CCceEEeccCCCcEEEeechhcc-------cCceeccCCCcceEEEEeCCCCCc
Confidence 3456889999999997 78899999999999999999854 245567899999999999954577
Q ss_pred EEEEEecCCeEEEEeCCC
Q 001628 244 KVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 244 ~l~sg~~dG~I~iWd~~~ 261 (1042)
.|++++.||.+.+||+..
T Consensus 331 vLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eeEecccCCcEEEEeccc
Confidence 899999999999999986
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2e-19 Score=198.83 Aligned_cols=299 Identities=16% Similarity=0.243 Sum_probs=209.6
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC
Q 001628 121 KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD 200 (1042)
Q Consensus 121 ~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d 200 (1042)
++.+.++...++...+++++.. .+.+|.+........ +-..+ +....-.-.+..|.|+.. +.++|++++.+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-~~~~~------k~kqn~~~S~~DVkW~~~-~~NlIAT~s~n 109 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-CNHRF------KTKQNKFYSAADVKWGQL-YSNLIATCSTN 109 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-eeeec------ccccceeeehhhcccccc-hhhhheeecCC
Confidence 3566778888888888777654 677777665431110 00000 000111235566888864 78999999999
Q ss_pred CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccc
Q 001628 201 GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKL 280 (1042)
Q Consensus 201 g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l 280 (1042)
|.|.+||+.... ..+.+..+..|...+.+++|+.....+|++|+.||.|++||++......+
T Consensus 110 G~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t------------- 171 (839)
T KOG0269|consen 110 GVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST------------- 171 (839)
T ss_pred CcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc-------------
Confidence 999999998621 12445667899999999999977788999999999999999987310000
Q ss_pred cCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCC
Q 001628 281 NLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPK 360 (1042)
Q Consensus 281 ~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 360 (1042)
+ .
T Consensus 172 --------------------------~-~--------------------------------------------------- 173 (839)
T KOG0269|consen 172 --------------------------F-R--------------------------------------------------- 173 (839)
T ss_pred --------------------------c-c---------------------------------------------------
Confidence 0 0
Q ss_pred ccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCC
Q 001628 361 QDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPP 440 (1042)
Q Consensus 361 ~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 440 (1042)
.....|..++|+|.
T Consensus 174 ---------------------------------------------~nSESiRDV~fsp~--------------------- 187 (839)
T KOG0269|consen 174 ---------------------------------------------SNSESIRDVKFSPG--------------------- 187 (839)
T ss_pred ---------------------------------------------ccchhhhceeeccC---------------------
Confidence 00112222333322
Q ss_pred CCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEecc
Q 001628 441 LLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS 520 (1042)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~d 520 (1042)
.++.+++++..|.+++||+..+..- +..+..|.++|.++.|+|++.+||+|+.|
T Consensus 188 -----------------~~~~F~s~~dsG~lqlWDlRqp~r~---------~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 188 -----------------YGNKFASIHDSGYLQLWDLRQPDRC---------EKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred -----------------CCceEEEecCCceEEEeeccCchhH---------HHHhhcccCceEEEeecCCCceeeecCCC
Confidence 2358999999999999999976321 22337999999999999999999999999
Q ss_pred ceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCc-EEEEEe--cCCcEEEEeccCCeEE
Q 001628 521 GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ-HLAVGS--DQGYVYLLDTEGPTVL 597 (1042)
Q Consensus 521 G~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~-~La~gs--~dg~V~vwD~~~~~~~ 597 (1042)
++|+||++.........++ .. -.+|.++.|-|... +||+++ .|-.|+|||++.+.+=
T Consensus 242 K~vkiWd~t~~~~~~~~tI----------nT----------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTI----------NT----------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ccEEEEeccCCCccceeEE----------ee----------cceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 9999999987554331111 11 28899999999765 577775 4778999999988765
Q ss_pred EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 598 YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 598 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
|..- ..|...++.++|.. .|...|.++++||+|..-..+
T Consensus 302 ~~t~--~eH~~~vt~i~W~~-----~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 302 YATF--LEHTDSVTGIAWDS-----GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ceee--eccCccccceeccC-----CCceeeEeecCccHHHHhhhh
Confidence 3332 23666999999984 257899999999998766544
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.3e-18 Score=171.27 Aligned_cols=220 Identities=14% Similarity=0.226 Sum_probs=173.3
Q ss_pred cCceeeeeecccCceEEEEEcC-CCCEEEEEEcCCeEEEEecCCCe------------EEEEe----cCCCcceEEEEEe
Q 001628 27 VDPRLVFHYGFPSGCNKFAYDP-LQKILAAATKDGRIKLYGRHNNT------------QALLE----SSEAVSTKFLQFL 89 (1042)
Q Consensus 27 ~~~~~~~~~G~~~~v~~la~sp-~~~~LA~gs~dg~I~iw~~~g~~------------~~~~~----~~~~~~v~~l~fs 89 (1042)
+..++-+..-|-+.|.++..++ .|+++.+|+.||.|.+||.+ +. ..... ..++-.|..+.|.
T Consensus 32 Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~-n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 32 LNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQ-NATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEec-cccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 4444444444458999999998 57999999999999999987 21 11111 1234578889999
Q ss_pred c-CCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEccCCccceeeeeeecc
Q 001628 90 E-NQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHS---NYMLLGDTAGKISVLKLDQESSQIVKMKYIIP 165 (1042)
Q Consensus 90 ~-~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~---~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip 165 (1042)
| |.+.+.+++-|.+++|||..+-+.......++.|.+-+++|-. .++++|..+-.|++-|+..+... +.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----H~-- 183 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----HT-- 183 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----ee--
Confidence 8 6678999999999999999999988888889999999999865 57889999999999999998631 11
Q ss_pred cccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe-eEEEeC------CcccccccccCCceeEEEEE
Q 001628 166 LSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESK-SIFSMG------GNVLQSVYHETKQVTSACWA 238 (1042)
Q Consensus 166 ~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~-~~~~~~------g~~~~~~~~~~~~I~~l~~~ 238 (1042)
..+|.+.|.++.|+|. ..-.|++|+.||.|++||++... +..... ...+++...|.+.|..+||.
T Consensus 184 -------LsGHr~~vlaV~Wsp~-~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 184 -------LSGHRDGVLAVEWSPS-SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred -------eccccCceEEEEeccC-ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 3457889999999995 45567899999999999998652 222221 11234457789999999998
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCcc
Q 001628 239 CPIGSKVAVGYSNGEILIWGVPSIL 263 (1042)
Q Consensus 239 ~~~g~~l~sg~~dG~I~iWd~~~~~ 263 (1042)
.+|.++++.+.|..+++|+...|+
T Consensus 256 -Sd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 256 -SDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -ccchhhhhccCccceEEeecccCc
Confidence 899999999999999999999874
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=1.4e-18 Score=182.15 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=133.6
Q ss_pred EEEecCCCcceEEEEEecCCC-EEEEEeCCCCEEEEEcCCCc-----------eeeeeecCCCeEEEEEeCCC-CEEEEE
Q 001628 73 ALLESSEAVSTKFLQFLENQG-ILLNVTSTNLIEVWDIDKKR-----------LSHVHVCKEEITSFTIMQHS-NYMLLG 139 (1042)
Q Consensus 73 ~~~~~~~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~~~~-----------~~~~~~h~~~It~v~~sp~~-~~l~sg 139 (1042)
......+...|..+++-|... .+++.+..+.|.|||..... -..+.+|.+.=++++|++.. -+|++|
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 333344556777788888665 45556778899999986533 12788999888889999876 688999
Q ss_pred eCCCcEEEEEccCCccc-eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeC
Q 001628 140 DTAGKISVLKLDQESSQ-IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMG 218 (1042)
Q Consensus 140 ~~dG~I~vwd~~~~~~~-~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~ 218 (1042)
+.|+.|++||+...... ....+.. . ...|...|..++|+|. +.+.+.+++.|+.+.|||.+++.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~----~----~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~------ 261 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKT----I----FSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNT------ 261 (422)
T ss_pred cCCCcEEEEeccccccCCccccceE----E----eecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCC------
Confidence 99999999999876521 0011111 1 3456889999999997 78889999999999999999631
Q ss_pred CcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 219 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 219 g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.+.......|..+|.|++|++-++..||+|+.|++|.+||++.
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 1233445789999999999966788999999999999999997
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=1.7e-18 Score=187.56 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=161.3
Q ss_pred eeeeeecccCceEEEEEcCC---CCEEEEEEcCCeEEEEecCCCeEEE-----E--ecCCCcceEEEEEecCCCEEEEEe
Q 001628 30 RLVFHYGFPSGCNKFAYDPL---QKILAAATKDGRIKLYGRHNNTQAL-----L--ESSEAVSTKFLQFLENQGILLNVT 99 (1042)
Q Consensus 30 ~~~~~~G~~~~v~~la~sp~---~~~LA~gs~dg~I~iw~~~g~~~~~-----~--~~~~~~~v~~l~fs~~~~~Lvs~s 99 (1042)
....+.|.|-+..+..|++. ..+||++..||.|.+||.. ..... | ..-|...|-.+.|.|...+||+++
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~-~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTK-SIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecch-hhhcchhhhhhcccccccceeEeeccCCCceeEEEcc
Confidence 45566777777766777653 4689999999999999987 33222 1 123446788899999888999999
Q ss_pred CCCCEEEEEcCCCce---eeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCcccee-------eeeeec---c
Q 001628 100 STNLIEVWDIDKKRL---SHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIV-------KMKYII---P 165 (1042)
Q Consensus 100 ~dg~I~vWd~~~~~~---~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~-------~~~~~i---p 165 (1042)
.|.++++||+.+..+ ....+|.+.|.+++|.|.. ..+++|+.||.|.|||+........ ...+.- |
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 999999999998873 3468999999999999987 5678999999999999865431000 000100 1
Q ss_pred cc---cccCc----cccCCCCEEEEEEccCCCCCeEEEEEC-CCeEEEEeccCCeeEEEeCCccccccccc---CCceeE
Q 001628 166 LS---ASHGN----EVSGDPAVINILPQPTAESKRILIIFR-DGLISLWDIRESKSIFSMGGNVLQSVYHE---TKQVTS 234 (1042)
Q Consensus 166 ~~---~~~~~----~~~~~~~V~~v~~~p~~d~~~lls~~~-dg~I~vWd~~~~~~~~~~~g~~~~~~~~~---~~~I~~ 234 (1042)
.. ..... ...-...|+.+.|. |...|++++. |+.|+|||++.....+..+......+..| ...+++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fk---De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFK---DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEe---ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 10 00000 11122457777777 7888999987 99999999998876665322222222222 456777
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 235 ACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 235 l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++.. ..|.+|.+.+.|+.|++||+.+
T Consensus 277 L~lD-ssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 277 LILD-SSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEec-CCCCeEEEEecCCcEEEEeccc
Confidence 8776 7889999888999999999986
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.6e-19 Score=195.38 Aligned_cols=288 Identities=14% Similarity=0.189 Sum_probs=207.3
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--ee-eee-e-cC---CCeEEEEEeC-CCCEEEEEeCCCcEEEEEcc
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LS-HVH-V-CK---EEITSFTIMQ-HSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~-~~~-~-h~---~~It~v~~sp-~~~~l~sg~~dG~I~vwd~~ 151 (1042)
....++...++...++.++. ..+.|+-+.... .. .+. + -. ..+..+.|.. +.++||+++.+|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 33444666677666777654 455666554332 11 111 1 11 1233455553 34899999999999999998
Q ss_pred CCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCc
Q 001628 152 QESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQ 231 (1042)
Q Consensus 152 ~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~ 231 (1042)
.... ..+.+. ...|...|.++.|++. ..++|++|+.||+|++||++..+.... +.+....
T Consensus 119 k~~r--nk~l~~---------f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t--------~~~nSES 178 (839)
T KOG0269|consen 119 KSIR--NKLLTV---------FNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKST--------FRSNSES 178 (839)
T ss_pred cccc--chhhhH---------hhhhccceeeeeeccC-CccEEEecCCCceEEEEeeeccccccc--------ccccchh
Confidence 7320 111111 2446779999999997 899999999999999999998664443 3557789
Q ss_pred eeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecc
Q 001628 232 VTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGA 311 (1042)
Q Consensus 232 I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg 311 (1042)
|..+.|+...+..|++++..|.+.+||++...
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------------------------------------------ 210 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------------------------------------------ 210 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCch------------------------------------------------
Confidence 99999996679999999999999999998620
Q ss_pred cccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCC
Q 001628 312 SDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSR 391 (1042)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~ 391 (1042)
T Consensus 211 -------------------------------------------------------------------------------- 210 (839)
T KOG0269|consen 211 -------------------------------------------------------------------------------- 210 (839)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcE
Q 001628 392 SPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAI 471 (1042)
Q Consensus 392 ~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~I 471 (1042)
...+++..|.++|.|+.+. |++.+||||+.|+.|
T Consensus 211 -------r~~~k~~AH~GpV~c~nwh---------------------------------------Pnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 211 -------RCEKKLTAHNGPVLCLNWH---------------------------------------PNREWLATGGRDKMV 244 (839)
T ss_pred -------hHHHHhhcccCceEEEeec---------------------------------------CCCceeeecCCCccE
Confidence 0112344788999999844 555699999999999
Q ss_pred EEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCC-EEEEEec--cceEEEEEeccCCcccccceeeecccccC
Q 001628 472 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR-VLVSGDQ--SGMVRIFKLKYEPHAIENSFLSFTGSKKG 548 (1042)
Q Consensus 472 riWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~-~Lasg~~--dG~V~vw~~~~~~~~~~~~~~~~~~~~~g 548 (1042)
+|||..++...++..+. ...+|..|.|-|+.+ .||+++. |-.|+|||+.
T Consensus 245 kiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr------------------- 296 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR------------------- 296 (839)
T ss_pred EEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhhccccceEEEEeec-------------------
Confidence 99999987666555442 237999999999875 4666554 7889999984
Q ss_pred ccceeeeEEEeecCCCeEEEEEec-CCcEEEEEecCCcEEEEecc
Q 001628 549 NSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 549 ~~~~~~~~~~~~~~~~V~~l~~sp-dg~~La~gs~dg~V~vwD~~ 592 (1042)
.+++|...+..|...++.++|.. |-..|-+++.||+|..-.++
T Consensus 297 -RPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 297 -RPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred -cccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 34556677888889999999986 45678889999887654443
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-17 Score=165.96 Aligned_cols=275 Identities=15% Similarity=0.253 Sum_probs=188.8
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC-CCEEEEEecCCe
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI-GSKVAVGYSNGE 253 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~-g~~l~sg~~dG~ 253 (1042)
.|..-|.++.|.+ .|.++++++.|++|+|||.+....... ....+..|.+.|..+.|.+|. |+.+++++.|++
T Consensus 11 ~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~----~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWS----CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred CCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceE----EeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 4567899999999 899999999999999999865442221 134568899999999998665 999999999999
Q ss_pred EEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeeccccccee
Q 001628 254 ILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRT 333 (1042)
Q Consensus 254 I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~ 333 (1042)
+.||.-.... .. -....|...
T Consensus 85 v~iWEE~~~~-----~~--------------------~~~~~Wv~~---------------------------------- 105 (361)
T KOG2445|consen 85 VSIWEEQEKS-----EE--------------------AHGRRWVRR---------------------------------- 105 (361)
T ss_pred eeeeeecccc-----cc--------------------cccceeEEE----------------------------------
Confidence 9999753210 00 001123210
Q ss_pred EEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeE
Q 001628 334 TKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITA 413 (1042)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~ 413 (1042)
..+...++.|+.
T Consensus 106 --------------------------------------------------------------------ttl~DsrssV~D 117 (361)
T KOG2445|consen 106 --------------------------------------------------------------------TTLVDSRSSVTD 117 (361)
T ss_pred --------------------------------------------------------------------EEeecCCcceeE
Confidence 001123345666
Q ss_pred EEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccc
Q 001628 414 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK 493 (1042)
Q Consensus 414 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~ 493 (1042)
+.|.|... |-.+++++.||++|||++-.+....-..|..++.+
T Consensus 118 V~FaP~hl-------------------------------------GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 118 VKFAPKHL-------------------------------------GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred EEecchhc-------------------------------------ceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 66554322 33799999999999999876532222222222111
Q ss_pred ---cCCCCCCCeEEEEEeCC---CCEEEEEecc-----ceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecC
Q 001628 494 ---DFSLSGIPLTALYYDGT---SRVLVSGDQS-----GMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN 562 (1042)
Q Consensus 494 ---~~~~~~~~V~~l~fsp~---~~~Lasg~~d-----G~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 562 (1042)
....+..+..|+.|+|. ..+||+|+.+ +.+.||....+.. .+. . . ..+..|.
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r----Kw~--------k--v---a~L~d~~ 223 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR----KWL--------K--V---AELPDHT 223 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc----eee--------e--e---hhcCCCC
Confidence 11235578899999975 3788988876 6899999876542 111 0 0 2233456
Q ss_pred CCeEEEEEecCC----cEEEEEecCCcEEEEeccCCe------------EE--Ee---cccccccCCCeEEEEEEeeecC
Q 001628 563 GSIISLNMNRNS----QHLAVGSDQGYVYLLDTEGPT------------VL--YQ---KHIASDISSGIVSLQFETCSLQ 621 (1042)
Q Consensus 563 ~~V~~l~~spdg----~~La~gs~dg~V~vwD~~~~~------------~~--~~---~~~~~~~~~~V~sl~fs~~~~~ 621 (1042)
.+|+.|+|.|+- ..||+++.|| |+||.+.... .+ +. ....+.|.+.|..+.|+-
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm---- 298 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM---- 298 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee----
Confidence 999999999974 4699999999 9999987311 11 11 112245888999999998
Q ss_pred CCCceEEEEEeCCceEEEEECC
Q 001628 622 GFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 622 ~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
.|..|.+.+.||+|++|...
T Consensus 299 --tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 299 --TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred --eeeEEeecCCCceeeehhhh
Confidence 89999999999999999843
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.3e-18 Score=182.63 Aligned_cols=282 Identities=16% Similarity=0.266 Sum_probs=215.7
Q ss_pred cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc----eeeeee--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001628 77 SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR----LSHVHV--CKEEITSFTIMQHSNYMLLGDTAGKISVLKL 150 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~----~~~~~~--h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~ 150 (1042)
..+...|.++..+...+++.+|+. |.|+|||+.... +..+.. ....|.++.+.|+++.|++|++-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 344567888999998888888865 889999997643 333332 3467999999999999999999999999999
Q ss_pred cCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 151 DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
...... +... .......+.+++.+| |.+..++++.||.|.|||+.+...++. +.+|..
T Consensus 495 AapTpr-------ikae-----ltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--------fqGhtD 552 (705)
T KOG0639|consen 495 AAPTPR-------IKAE-----LTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--------FQGHTD 552 (705)
T ss_pred cCCCcc-------hhhh-----cCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--------ccCCCC
Confidence 876521 1100 011124677899999 999999999999999999999776665 488999
Q ss_pred ceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEec
Q 001628 231 QVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMG 310 (1042)
Q Consensus 231 ~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~g 310 (1042)
.+.|+..+ ++|..|-+|+-|++|+-||++++++..
T Consensus 553 GascIdis-~dGtklWTGGlDntvRcWDlregrqlq-------------------------------------------- 587 (705)
T KOG0639|consen 553 GASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQ-------------------------------------------- 587 (705)
T ss_pred CceeEEec-CCCceeecCCCccceeehhhhhhhhhh--------------------------------------------
Confidence 99999998 999999999999999999999852111
Q ss_pred ccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCC
Q 001628 311 ASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS 390 (1042)
Q Consensus 311 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~ 390 (1042)
.+| +.
T Consensus 588 ----------------------------------------------------------------qhd--------F~--- 592 (705)
T KOG0639|consen 588 ----------------------------------------------------------------QHD--------FS--- 592 (705)
T ss_pred ----------------------------------------------------------------hhh--------hh---
Confidence 011 00
Q ss_pred CCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCc
Q 001628 391 RSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGA 470 (1042)
Q Consensus 391 ~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~ 470 (1042)
+.|.++. ..|.++.++.|-+++.
T Consensus 593 ------------------SQIfSLg---------------------------------------~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 593 ------------------SQIFSLG---------------------------------------YCPTGDWLAVGMENSN 615 (705)
T ss_pred ------------------hhheecc---------------------------------------cCCCccceeeecccCc
Confidence 0011111 3456668999999999
Q ss_pred EEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCcc
Q 001628 471 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNS 550 (1042)
Q Consensus 471 IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~ 550 (1042)
|.+-......- |.| ..|...|.++.|++-|+++++.+.|..+-.|+...+... |. ..
T Consensus 616 vevlh~skp~k---yql--------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi----Fq--------sk 672 (705)
T KOG0639|consen 616 VEVLHTSKPEK---YQL--------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI----FQ--------SK 672 (705)
T ss_pred EEEEecCCccc---eee--------cccccEEEEEEecccCceeeecCchhhhhhccCccccce----ee--------cc
Confidence 98888876532 222 567899999999999999999999999999997654331 11 11
Q ss_pred ceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec
Q 001628 551 HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT 591 (1042)
Q Consensus 551 ~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~ 591 (1042)
...+|+++.+|.|.+++++|+.|....||.+
T Consensus 673 ----------E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ----------ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ----------ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 2388999999999999999999988888764
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=5.4e-17 Score=179.33 Aligned_cols=182 Identities=11% Similarity=0.191 Sum_probs=130.5
Q ss_pred CCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEE-EEEeCCCCEEEEEcCCCceee-eeecCCCeEE
Q 001628 50 QKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGIL-LNVTSTNLIEVWDIDKKRLSH-VHVCKEEITS 126 (1042)
Q Consensus 50 ~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~L-vs~s~dg~I~vWd~~~~~~~~-~~~h~~~It~ 126 (1042)
+.++++++.||.|++|+.. +.....+..+. .+..+.|+|+++.+ ++++.++.|++||..+++... +..+ ..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccE
Confidence 4678899999999999986 34555565443 35669999999876 566788999999999887443 3333 34678
Q ss_pred EEEeCCCCEEEEE-eCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCC-eEE
Q 001628 127 FTIMQHSNYMLLG-DTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDG-LIS 204 (1042)
Q Consensus 127 v~~sp~~~~l~sg-~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg-~I~ 204 (1042)
++|+|+++.++++ ..++.|++||+.+... +. .++ ....+.+++|+| ++..++++..++ .+.
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~----~~~----------~~~~~~~~~~~~--dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKV-LA----EIP----------VGVEPEGMAVSP--DGKIVVNTSETTNMAH 140 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeE-Ee----Eee----------CCCCcceEEECC--CCCEEEEEecCCCeEE
Confidence 8999999988765 4689999999987542 11 110 112457799999 899999888775 566
Q ss_pred EEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE-ecCCeEEEEeCCC
Q 001628 205 LWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG-YSNGEILIWGVPS 261 (1042)
Q Consensus 205 vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg-~~dG~I~iWd~~~ 261 (1042)
+||..+++..... .......+++|+ ++|..|+++ ..+|.|.+||+.+
T Consensus 141 ~~d~~~~~~~~~~---------~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 141 FIDTKTYEIVDNV---------LVDQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred EEeCCCCeEEEEE---------EcCCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCc
Confidence 7898876654331 112234668887 888877544 4588899998876
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=188.42 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=130.2
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCC-c-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKK-R-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIV 158 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~-~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~ 158 (1042)
...+.|+|.|+|.+|++++.||.|++|+...- . +..+..+...|.+++. .+.++++|+.+++|.+|.+...+..-.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce
Confidence 45677999999999999999999999997665 3 5555547888888776 445999999999999999998774323
Q ss_pred eeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE
Q 001628 159 KMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA 238 (1042)
Q Consensus 159 ~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~ 238 (1042)
..+++ .++.+++|+- +|++++.|+.|-.|++-+..+....+. +.+|..+|.++.|+
T Consensus 92 L~Rft--------------lp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~--------lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 92 LARFT--------------LPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKV--------LRGHDAPVLQLSYD 147 (933)
T ss_pred eeeee--------------ccceEEEEec--CCcEEEeecCceeEEEEeccccchhee--------ecccCCceeeeeEc
Confidence 33333 3888999998 899999999999999999988665554 48899999999998
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCc
Q 001628 239 CPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 239 ~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
|.+.+||+.+.||.|++|++.++
T Consensus 148 -p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 148 -PKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred -CCCCEEEEEecCceEEEEEcccc
Confidence 99999999999999999999974
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=3e-18 Score=185.61 Aligned_cols=324 Identities=16% Similarity=0.248 Sum_probs=204.5
Q ss_pred EEEeCC---CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeE
Q 001628 127 FTIMQH---SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLI 203 (1042)
Q Consensus 127 v~~sp~---~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I 203 (1042)
..|++. ...||++.++|.|.++|.......+....+. ....|...|..+.|-| ....|++++.|.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------~~~aH~nAifDl~wap--ge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------KPLAHKNAIFDLKWAP--GESLLVSASGDSTI 124 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------ccccccceeEeeccCC--CceeEEEccCCcee
Confidence 455543 3789999999999999988765211111001 0245788999999999 67889999999999
Q ss_pred EEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCC
Q 001628 204 SLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLG 283 (1042)
Q Consensus 204 ~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~ 283 (1042)
++||+.+++.+.. ....+|...|.++||+..+...|++|+.||.|.|||++......... +
T Consensus 125 r~Wdvk~s~l~G~------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~----------~--- 185 (720)
T KOG0321|consen 125 RPWDVKTSRLVGG------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE----------F--- 185 (720)
T ss_pred eeeeeccceeecc------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH----------H---
Confidence 9999999875542 23588999999999995567889999999999999998631000000 0
Q ss_pred CCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccE
Q 001628 284 YKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDS 363 (1042)
Q Consensus 284 ~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 363 (1042)
... +++....
T Consensus 186 -------------------~~~--~~~~~n~------------------------------------------------- 195 (720)
T KOG0321|consen 186 -------------------DNR--IYGRHNT------------------------------------------------- 195 (720)
T ss_pred -------------------hhh--hhccccC-------------------------------------------------
Confidence 000 0000000
Q ss_pred EEEEecCCceEEeecccceeeeccCCCCCCCCCCcc-ceeccCCCC----cceeEEEEeecCccccccchhHHHhhhhcC
Q 001628 364 FLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKE-VMLKMPFLD----SSITAMKLITGNSFILSSADEDYSLLAKSV 438 (1042)
Q Consensus 364 l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~-~~~~~~~h~----~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~ 438 (1042)
.+ .|.-|.. .......+. +.||.+
T Consensus 196 --------------------------~p-tpskp~~kr~~k~kA~s~ti~ssvTvv------------------------ 224 (720)
T KOG0321|consen 196 --------------------------AP-TPSKPLKKRIRKWKAASNTIFSSVTVV------------------------ 224 (720)
T ss_pred --------------------------CC-CCCchhhccccccccccCceeeeeEEE------------------------
Confidence 00 0000000 000000111 123333
Q ss_pred CCCCCCCcCCCCCCccCCCCccEEEEEeC-CCcEEEEeCCCCceeeeeeccccccccCCCC---CCCeEEEEEeCCCCEE
Q 001628 439 PPLLDFETKLKDGSQSHSKVKNLFITGHS-DGAINFWDVSCPLFLLILSLKQQSEKDFSLS---GIPLTALYYDGTSRVL 514 (1042)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~tg~~-Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~---~~~V~~l~fsp~~~~L 514 (1042)
+..|...||+++. |+.|++||+..... .++..+.....+..| ...++++..+..|.+|
T Consensus 225 ----------------~fkDe~tlaSaga~D~~iKVWDLRk~~~--~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 225 ----------------LFKDESTLASAGAADSTIKVWDLRKNYT--AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ----------------EEeccceeeeccCCCcceEEEeeccccc--ccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 2345557888877 99999999986521 122211111112223 3568888888888888
Q ss_pred EEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCC
Q 001628 515 VSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP 594 (1042)
Q Consensus 515 asg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~ 594 (1042)
.+...|+.|.+|++..........+ .++. ...-.|. -..+||+.+|++|+.|..+++|.+..+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~---------sg~~-------~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEF---------SGKL-------NSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhc---------cCcc-------cceeeee-eecCCCCceEeccCCCcceeeeeecCc
Confidence 7777799999999986554321112 1111 0001122 245899999999999999999999876
Q ss_pred eE---EEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCC
Q 001628 595 TV---LYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNG 645 (1042)
Q Consensus 595 ~~---~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg 645 (1042)
+. ++.+|.. .|++++|.|. .-.-++++++|.++.+|++.+|
T Consensus 350 e~~~~~l~Ght~-----eVt~V~w~pS-----~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 350 EAPPALLLGHTR-----EVTTVRWLPS-----ATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCChhhhhCcce-----EEEEEeeccc-----cCCCceeeccCcceEEEeccCc
Confidence 54 2555554 8999999971 2334566699999999998643
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=179.31 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=171.7
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCC--
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDK-- 111 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~-- 111 (1042)
.=.|+.|.|++-+|.|.+|+.|+..|.|++|... |.+..++ ..|-..|++|.|+.|+.+|++++.||.|.+|.+..
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 4578999999999999999999999999999988 4555555 44457899999999999999999999999998632
Q ss_pred -----Cc---eeeeeecCCCeEEEEEeCCC--CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEE
Q 001628 112 -----KR---LSHVHVCKEEITSFTIMQHS--NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVI 181 (1042)
Q Consensus 112 -----~~---~~~~~~h~~~It~v~~sp~~--~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~ 181 (1042)
+. +..+..|.-+|+.+...+.+ .+|++++.|.++++||+..+.+ + ....+ +.++.
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-L--lti~f------------p~si~ 221 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-L--LTITF------------PSSIK 221 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-e--EEEec------------CCcce
Confidence 11 56677899999999988775 7999999999999999999863 1 11111 45889
Q ss_pred EEEEccCCCCCeEEEEECCCeEEEEeccCCee--------EEEeCCcccccccccCC--ceeEEEEEccCCCEEEEEecC
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRESKS--------IFSMGGNVLQSVYHETK--QVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 182 ~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~--------~~~~~g~~~~~~~~~~~--~I~~l~~~~~~g~~l~sg~~d 251 (1042)
+++..| ...++++|+++|.|.+.++..-.. .+...+.....+.+|.. +|+|++.+ .||..|++|+.|
T Consensus 222 av~lDp--ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~d 298 (476)
T KOG0646|consen 222 AVALDP--AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLSGDED 298 (476)
T ss_pred eEEEcc--cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEeeCCC
Confidence 999999 889999999999999888765331 11223344556678877 99999998 999999999999
Q ss_pred CeEEEEeCCCc
Q 001628 252 GEILIWGVPSI 262 (1042)
Q Consensus 252 G~I~iWd~~~~ 262 (1042)
|.++|||+.+.
T Consensus 299 g~VcvWdi~S~ 309 (476)
T KOG0646|consen 299 GKVCVWDIYSK 309 (476)
T ss_pred CCEEEEecchH
Confidence 99999999874
No 142
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-16 Score=179.33 Aligned_cols=460 Identities=13% Similarity=0.159 Sum_probs=266.5
Q ss_pred eeecccCceEEEEEcCCCC---EEEEEEcCCeEEEEecCC-CeEEEEecCCC----------cc----------------
Q 001628 33 FHYGFPSGCNKFAYDPLQK---ILAAATKDGRIKLYGRHN-NTQALLESSEA----------VS---------------- 82 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~~~---~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~----------~~---------------- 82 (1042)
...++...++.+.+.|... ++.+.+.+|.|++|+..+ ....++..... ..
T Consensus 52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~ 131 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILT 131 (792)
T ss_pred hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeee
Confidence 3456777888888887654 667899999999998751 22222211100 00
Q ss_pred -------------------------------eEEEEEecCCCEEEEEeCCCCEEEEEcCCCce-----eeeeecCCCeEE
Q 001628 83 -------------------------------TKFLQFLENQGILLNVTSTNLIEVWDIDKKRL-----SHVHVCKEEITS 126 (1042)
Q Consensus 83 -------------------------------v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~-----~~~~~h~~~It~ 126 (1042)
-..+.+++.+ .+.....+..+.+|+...+.. .....|.-.++|
T Consensus 132 ~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~ 210 (792)
T KOG1963|consen 132 TFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITC 210 (792)
T ss_pred ecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-eEEEEEEeeeEEEEEecccceeeccchhhhhhccccee
Confidence 0112223333 233344456677888777541 112236667999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEccC-CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEE
Q 001628 127 FTIMQHSNYMLLGDTAGKISVLKLDQ-ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISL 205 (1042)
Q Consensus 127 v~~sp~~~~l~sg~~dG~I~vwd~~~-~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~v 205 (1042)
++++|.++++++|..||.|.+|.--. ...+. ....+.| |...|.+++|++ +|.+|++|+..|.+.+
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~--t~t~lHW---------H~~~V~~L~fS~--~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSE--TCTLLHW---------HHDEVNSLSFSS--DGAYLLSGGREGVLVL 277 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccc--cceEEEe---------cccccceeEEec--CCceEeecccceEEEE
Confidence 99999999999999999999997433 11001 1112212 356999999999 9999999999999999
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYK 285 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~ 285 (1042)
|.+.+++..+ +..-.++|..+.++ ||++..+....|+.|.+....+......... +....
T Consensus 278 Wq~~T~~kqf---------LPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg---------i~~~~- 337 (792)
T KOG1963|consen 278 WQLETGKKQF---------LPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTISG---------IKPPT- 337 (792)
T ss_pred EeecCCCccc---------ccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhccC---------ccCCC-
Confidence 9999977333 35557899999998 9999999999999999998876311111100 00000
Q ss_pred CCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEE
Q 001628 286 LDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFL 365 (1042)
Q Consensus 286 ~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~ 365 (1042)
|-+ ......+ .+.+.++ .....++
T Consensus 338 ----~~~-------k~~~~~l-------------~t~~~id--------------------------------pr~~~~v 361 (792)
T KOG1963|consen 338 ----PST-------KTRPQSL-------------TTGVSID--------------------------------PRTNSLV 361 (792)
T ss_pred ----ccc-------ccccccc-------------ceeEEEc--------------------------------CCCCcee
Confidence 000 0000000 0000000 1234457
Q ss_pred EEecCCceEEeecccceeeeccCCCCCCCCCCccceeccC------CCCcceeEEEEeecCccccccchhHHHhhhhcCC
Q 001628 366 LLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMP------FLDSSITAMKLITGNSFILSSADEDYSLLAKSVP 439 (1042)
Q Consensus 366 vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~------~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~ 439 (1042)
..++.|.|.+||+...+.+ ... ...... .+.-.++.++.+..+.++++.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i-~~~-----------~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~--------- 420 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTI-YKL-----------QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI--------- 420 (792)
T ss_pred ecCCCceEEEEecccccee-eeE-----------EEEeecccCCcceeEEeeeeehhhccceEEEEeeeee---------
Confidence 7778888999985433221 000 000000 1122334444333333333221110
Q ss_pred CCCCCCcCCCCCCccCCCCccEEEEEeCC--CcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCC-CC-EEE
Q 001628 440 PLLDFETKLKDGSQSHSKVKNLFITGHSD--GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT-SR-VLV 515 (1042)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~l~tg~~D--g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~-~~-~La 515 (1042)
+.+ ...| -.+|+|-.....-. +.|...+. .+|+..+.+.+|.+. .. .++
T Consensus 421 --------------------d~~--~~~~~e~~LKFW~~n~~~kt--~~L~T~I~---~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 421 --------------------DKF--NFFDGEVSLKFWQYNPNSKT--FILNTKIN---NPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred --------------------hhh--hccCceEEEEEEEEcCCcce--eEEEEEEe---cCCCceeEEEEEecCcccceeE
Confidence 000 1223 35889987654222 22222212 477766666665543 33 799
Q ss_pred EEeccceEEEEEeccCCccc--ccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC
Q 001628 516 SGDQSGMVRIFKLKYEPHAI--ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 516 sg~~dG~V~vw~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~ 593 (1042)
+++.||.++||-+...+... ...+ .+. ..-..|+.++++++|+.||..||+|. |++|.+||..+
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W----------~c~---~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNW----------TCK---AIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccce----------EEe---eeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 99999999999996554432 1111 111 33335789999999999998888776 57899999998
Q ss_pred C-eEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 594 P-TVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 594 ~-~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
+ ++....... ..++..+.|.... .....++....+++.+|++.++.++...
T Consensus 540 ~~~l~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 540 KNELLCTEGSR---NWPIAELLFTAQT----QNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred hhhhhcccccc---ccchHhHhhhccc----ccccceeeccCceEehHhhhhhheecch
Confidence 4 332222211 2244455544200 1233344445789999999888877644
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.1e-17 Score=164.29 Aligned_cols=298 Identities=15% Similarity=0.178 Sum_probs=191.5
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF 198 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~ 198 (1042)
+|..-|+|+.|.+.|++|++++.|++|+|||...... .+.....++ .|.+.|..|.|-+..-|+.+++++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----TWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----ceEEeeeEE-----ecCCcEEEEEecCccccceEEEEe
Confidence 5778899999999999999999999999999865442 122222232 367899999997654689999999
Q ss_pred CCCeEEEEeccCCeeEEE-eCCcccccccccCCceeEEEEEccC--CCEEEEEecCCeEEEEeCCCccccccccCCcccc
Q 001628 199 RDGLISLWDIRESKSIFS-MGGNVLQSVYHETKQVTSACWACPI--GSKVAVGYSNGEILIWGVPSILNLKTEECGTQIT 275 (1042)
Q Consensus 199 ~dg~I~vWd~~~~~~~~~-~~g~~~~~~~~~~~~I~~l~~~~~~--g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~ 275 (1042)
.|+++.||.-........ ..=....++......|+.++|. |. |-.+++++.||.++||+..+...+..-.-.+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~Fa-P~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E-- 157 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFA-PKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE-- 157 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEec-chhcceEEEEeccCcEEEEEecCCccccccchhhhh--
Confidence 999999997642111000 0001122345567899999997 64 78999999999999999987532222111111
Q ss_pred ccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCC
Q 001628 276 PICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSD 355 (1042)
Q Consensus 276 p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 355 (1042)
+..+...+.....+-..+.|+.++-... ++.+|.... +++.
T Consensus 158 -i~~~~~pp~~~~~~~~CvsWn~sr~~~p-~iAvgs~e~-a~~~------------------------------------ 198 (361)
T KOG2445|consen 158 -IQNVIDPPGKNKQPCFCVSWNPSRMHEP-LIAVGSDED-APHL------------------------------------ 198 (361)
T ss_pred -hhhccCCcccccCcceEEeeccccccCc-eEEEEcccC-Cccc------------------------------------
Confidence 1111112223346778888885333322 333333321 1110
Q ss_pred CCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhh
Q 001628 356 PNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLA 435 (1042)
Q Consensus 356 ~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~ 435 (1042)
+.+.+|... .....+ .....+|.|..+|+.++|.|+-.
T Consensus 199 ---------------~~~~Iye~~--------e~~rKw-----~kva~L~d~~dpI~di~wAPn~G-------------- 236 (361)
T KOG2445|consen 199 ---------------NKVKIYEYN--------ENGRKW-----LKVAELPDHTDPIRDISWAPNIG-------------- 236 (361)
T ss_pred ---------------cceEEEEec--------CCccee-----eeehhcCCCCCcceeeeeccccC--------------
Confidence 123333311 110000 11234568999999999988754
Q ss_pred hcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCc----------eeeeeeccccccccCCCCCCCeEEE
Q 001628 436 KSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPL----------FLLILSLKQQSEKDFSLSGIPLTAL 505 (1042)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~----------~~~l~~l~~~~~~~~~~~~~~V~~l 505 (1042)
..-.++++++.|| |+||++.... ...+..|+-+....+..|.+.|..+
T Consensus 237 ---------------------r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 237 ---------------------RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred ---------------------CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence 2234899999999 9999987421 0111122222233457899999999
Q ss_pred EEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 506 YYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 506 ~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
.|+-.|..|++.+.||.||+|+..-..
T Consensus 295 ~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 295 RWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EEeeeeeEEeecCCCceeeehhhhhhh
Confidence 999999999999999999999976443
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=2.8e-17 Score=177.82 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=188.1
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVK 159 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~ 159 (1042)
..|..++|-|||..|+.+ .++.+.+||...|. +.++.+|.+.|.|++++.+|+++++|+.|..|.+|+-.-...
T Consensus 13 hci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---- 87 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---- 87 (1081)
T ss_pred cchheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce----
Confidence 368889999999988876 45789999999887 889999999999999999999999999999999998665431
Q ss_pred eeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEc
Q 001628 160 MKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWAC 239 (1042)
Q Consensus 160 ~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~ 239 (1042)
+ .-+|...|.|+.|+| -..+|++++-. ..-+|......+.. ......+.+++|.
T Consensus 88 L------------kYSH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V~K----------~kss~R~~~CsWt- 141 (1081)
T KOG1538|consen 88 L------------KYSHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSVSK----------HKSSSRIICCSWT- 141 (1081)
T ss_pred e------------eeccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhHHh----------hhhheeEEEeeec-
Confidence 1 123578999999999 56667666543 34589887644322 2345688999998
Q ss_pred cCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCcc
Q 001628 240 PIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNL 319 (1042)
Q Consensus 240 ~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~ 319 (1042)
.||.+|+.|..||+|.+-+.... +-.+++... ....||.++.|+.+.+.+.
T Consensus 142 nDGqylalG~~nGTIsiRNk~gE-------------ek~~I~Rpg-g~Nspiwsi~~~p~sg~G~--------------- 192 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKNGE-------------EKVKIERPG-GSNSPIWSICWNPSSGEGR--------------- 192 (1081)
T ss_pred CCCcEEEEeccCceEEeecCCCC-------------cceEEeCCC-CCCCCceEEEecCCCCCCc---------------
Confidence 89999999999999999876652 222222111 1236788888886433110
Q ss_pred EEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCcc
Q 001628 320 LQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKE 399 (1042)
Q Consensus 320 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~ 399 (1042)
.+.+.|..-+-++.+|.+.+.. + .
T Consensus 193 -----------------------------------------~di~aV~DW~qTLSFy~LsG~~---I------g------ 216 (1081)
T KOG1538|consen 193 -----------------------------------------NDILAVADWGQTLSFYQLSGKQ---I------G------ 216 (1081)
T ss_pred -----------------------------------------cceEEEEeccceeEEEEeccee---e------c------
Confidence 0111111222233333322110 0 0
Q ss_pred ceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCcc--CCCCccEEEEEeCCCcEEEEeCC
Q 001628 400 VMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVS 477 (1042)
Q Consensus 400 ~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~ 477 (1042)
+-....-.-.|+.|.++|.+++.++.+.-+.++....-.+........+++. ..|+++.++.|+.||+|..|++-
T Consensus 217 ---k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 217 ---KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 0001112235788999999999988887776665443322211112222222 78999999999999999999876
Q ss_pred CC
Q 001628 478 CP 479 (1042)
Q Consensus 478 ~~ 479 (1042)
..
T Consensus 294 fS 295 (1081)
T KOG1538|consen 294 FS 295 (1081)
T ss_pred Hh
Confidence 43
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=3.2e-17 Score=171.38 Aligned_cols=221 Identities=17% Similarity=0.235 Sum_probs=167.6
Q ss_pred CCCCCCcCceeeeee-cccCceEEEEEcCCC--CEEEEEEcCCeEEEEecCC----CeEEEEecCCCcceEEEEEecC-C
Q 001628 21 GLKSSDVDPRLVFHY-GFPSGCNKFAYDPLQ--KILAAATKDGRIKLYGRHN----NTQALLESSEAVSTKFLQFLEN-Q 92 (1042)
Q Consensus 21 ~l~~~~~~~~~~~~~-G~~~~v~~la~sp~~--~~LA~gs~dg~I~iw~~~g----~~~~~~~~~~~~~v~~l~fs~~-~ 92 (1042)
.++....+++....+ -+++.|++++|+|.. +++|+|...|+|-+||..+ ..-..+-.++..+|.+|.|+|. .
T Consensus 168 ~~dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 168 KFDLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred ccccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh
Confidence 333344444444443 357899999999976 4899999999999999842 1222334556689999999994 4
Q ss_pred CEEEEEeCCCCEEEEEcCCCce---eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccc
Q 001628 93 GILLNVTSTNLIEVWDIDKKRL---SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSAS 169 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~~---~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~ 169 (1042)
..+++.+.||+|+.-|+++... ..+..-...+..+.|+.+..-++.|+.-|...+||.....-..
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~------------ 315 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY------------ 315 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc------------
Confidence 5799999999999999998873 3333344567788999999999999999999999998865111
Q ss_pred cCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEe
Q 001628 170 HGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGY 249 (1042)
Q Consensus 170 ~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~ 249 (1042)
.+...|+..|.+|+++|. ...++++++.|++.+|||++.-..-.. .+-....|...|.+++|+ |++..|+|.+
T Consensus 316 -~~~~lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~s----p~lst~~HrrsV~sAyFS-Ps~gtl~TT~ 388 (498)
T KOG4328|consen 316 -ENLRLHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKAS----PFLSTLPHRRSVNSAYFS-PSGGTLLTTC 388 (498)
T ss_pred -hhhhhhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCC----cceecccccceeeeeEEc-CCCCceEeec
Confidence 112335669999999997 888999999999999999986331110 012235789999999998 8877799999
Q ss_pred cCCeEEEEeCC
Q 001628 250 SNGEILIWGVP 260 (1042)
Q Consensus 250 ~dG~I~iWd~~ 260 (1042)
.|..|+|||..
T Consensus 389 ~D~~IRv~dss 399 (498)
T KOG4328|consen 389 QDNEIRVFDSS 399 (498)
T ss_pred cCCceEEeecc
Confidence 99999999985
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=4e-16 Score=172.37 Aligned_cols=141 Identities=15% Similarity=0.196 Sum_probs=98.7
Q ss_pred CEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 93 GILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYM-LLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l-~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
..+++++.|+.|++||+.+++......+...+.+++|+|++..+ ++++.++.|++||..+.+. .. .++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~---~~~------ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IG---TLP------ 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EE---ecc------
Confidence 46889999999999999988744443444557889999999877 4667889999999987652 11 111
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEE-ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec
Q 001628 172 NEVSGDPAVINILPQPTAESKRILII-FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS 250 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~-~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~ 250 (1042)
....+..+.|+| +++.++++ ..++.|++||+.+++.+..+ .+...+.+++|+ |+|..++++..
T Consensus 71 ----~~~~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~---------~~~~~~~~~~~~-~dg~~l~~~~~ 134 (300)
T TIGR03866 71 ----SGPDPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEI---------PVGVEPEGMAVS-PDGKIVVNTSE 134 (300)
T ss_pred ----CCCCccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEe---------eCCCCcceEEEC-CCCCEEEEEec
Confidence 012345688999 88877665 46899999999987655543 112345678887 88888887776
Q ss_pred CCe-EEEEeCC
Q 001628 251 NGE-ILIWGVP 260 (1042)
Q Consensus 251 dG~-I~iWd~~ 260 (1042)
++. +.+||..
T Consensus 135 ~~~~~~~~d~~ 145 (300)
T TIGR03866 135 TTNMAHFIDTK 145 (300)
T ss_pred CCCeEEEEeCC
Confidence 543 3344443
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=3.6e-17 Score=171.05 Aligned_cols=311 Identities=16% Similarity=0.171 Sum_probs=208.1
Q ss_pred eeeeeecCCCeEEEEEeCCC--CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCC
Q 001628 114 LSHVHVCKEEITSFTIMQHS--NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAES 191 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~--~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~ 191 (1042)
......+.++|++++|+|.. +.+++|+..|.|-+||+.+++-..... |. ...|.++|.++.|+|. +.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-~~---------f~~hs~~Vs~l~F~P~-n~ 247 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-YL---------FTPHSGPVSGLKFSPA-NT 247 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce-EE---------eccCCccccceEecCC-Ch
Confidence 45566788999999999987 588999999999999997443111111 11 2346789999999996 88
Q ss_pred CeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCC
Q 001628 192 KRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECG 271 (1042)
Q Consensus 192 ~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~ 271 (1042)
.++++.+.||+|++-|++.+..... -........+.++.|+ .+...++.+..=|.+.+||.+....
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v------~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~s------- 313 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEV------LSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDGS------- 313 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHH------hhcCccceeeeecccc-CCCccEEEeecccceEEEEeecCCc-------
Confidence 9999999999999999987542111 1112234455566665 5555666666666777888775310
Q ss_pred ccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEcc
Q 001628 272 TQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIIS 351 (1042)
Q Consensus 272 ~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1042)
T Consensus 314 -------------------------------------------------------------------------------- 313 (498)
T KOG4328|consen 314 -------------------------------------------------------------------------------- 313 (498)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHH
Q 001628 352 SSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDY 431 (1042)
Q Consensus 352 ~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~ 431 (1042)
....+..|...|+.+++.|..+
T Consensus 314 ------------------------------------------------~~~~~~lh~kKI~sv~~NP~~p---------- 335 (498)
T KOG4328|consen 314 ------------------------------------------------EYENLRLHKKKITSVALNPVCP---------- 335 (498)
T ss_pred ------------------------------------------------cchhhhhhhcccceeecCCCCc----------
Confidence 0011124555677777666555
Q ss_pred HhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCcee--eeeeccccccccCCCCCCCeEEEEEeC
Q 001628 432 SLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFL--LILSLKQQSEKDFSLSGIPLTALYYDG 509 (1042)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~--~l~~l~~~~~~~~~~~~~~V~~l~fsp 509 (1042)
.+++|++.|++.+|||+..-.-. +++.. ..|...|.+..|||
T Consensus 336 ----------------------------~~laT~s~D~T~kIWD~R~l~~K~sp~lst--------~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 336 ----------------------------WFLATASLDQTAKIWDLRQLRGKASPFLST--------LPHRRSVNSAYFSP 379 (498)
T ss_pred ----------------------------hheeecccCcceeeeehhhhcCCCCcceec--------ccccceeeeeEEcC
Confidence 38999999999999998743211 12211 47889999999999
Q ss_pred CCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEE
Q 001628 510 TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL 589 (1042)
Q Consensus 510 ~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vw 589 (1042)
.+..|++.+.|..|+||+..--....+.... ..|. ...--+ -......|.|+..++++|-.-..|-|+
T Consensus 380 s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~--------I~Hn---~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 380 SGGTLLTTCQDNEIRVFDSSCISAKDEPLGT--------IPHN---NRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred CCCceEeeccCCceEEeecccccccCCccce--------eecc---Cccccc-ccchhheeCCCccEEEEeccCcceeEE
Confidence 9988999999999999998511110000000 0111 000000 123456799999999999999999999
Q ss_pred eccCCeEEEecccccccCCCeEEE-EEEeeecCCCCce-EEEEEeCCceEEEEECC
Q 001628 590 DTEGPTVLYQKHIASDISSGIVSL-QFETCSLQGFEKN-FLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 590 D~~~~~~~~~~~~~~~~~~~V~sl-~fs~~~~~~~~~~-~L~s~s~Dg~V~vwd~~ 643 (1042)
|-.+++.++.-|.. ....|.++ .|.| -+. +++-++.-|.|+||-.+
T Consensus 448 ~~~~~q~v~el~~P--~~~tI~~vn~~HP------~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 448 DGNGGQMVCELHDP--ESSTIPSVNEFHP------MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCCCCEEeeeccCc--cccccccceeecc------cccceeccCCccceEEEEecC
Confidence 99999976443422 22345554 4888 555 55556667899999754
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=7.2e-17 Score=159.18 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=123.2
Q ss_pred cCCCcceEEEEEec-CCCEEEEEeCCCCEEEEEcCCCc-------ee---------eeeecCCCeEEEEEeCCC-CEEEE
Q 001628 77 SSEAVSTKFLQFLE-NQGILLNVTSTNLIEVWDIDKKR-------LS---------HVHVCKEEITSFTIMQHS-NYMLL 138 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~-~~~~Lvs~s~dg~I~vWd~~~~~-------~~---------~~~~h~~~It~v~~sp~~-~~l~s 138 (1042)
.++...|..|...+ .++++++|+.||.|.|||++... +. .-.+|.-.|+.+.|-|-. -.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 44557788888877 57899999999999999997532 11 112466789999988866 45567
Q ss_pred EeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC-CCeEEEEECCCeEEEEeccCCeeEEEe
Q 001628 139 GDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE-SKRILIIFRDGLISLWDIRESKSIFSM 217 (1042)
Q Consensus 139 g~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d-~~~lls~~~dg~I~vWd~~~~~~~~~~ 217 (1042)
++-|.+++|||..+.+.. ..+.+ ++.|.+-+++|.+- ...+++|+.+-.|++-|+.+|...
T Consensus 120 sSFDhtlKVWDtnTlQ~a---~~F~m------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s--- 181 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA---VDFKM------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS--- 181 (397)
T ss_pred ccccceEEEeecccceee---EEeec------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce---
Confidence 778999999999986521 11222 46788888888544 345677788889999999996644
Q ss_pred CCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 218 GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 218 ~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+++.+|...|.++.|++...-.|++|+.||.|++||++.
T Consensus 182 -----H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 182 -----HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred -----eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 446899999999999844556789999999999999985
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=1.1e-16 Score=160.71 Aligned_cols=163 Identities=14% Similarity=0.223 Sum_probs=129.2
Q ss_pred CCCcceEEEEEec----CCCEEEEEeCCCCEEEEEcCCCc-eeeee-----ecCCCeEEEEEeCCC----CEEEEEeCCC
Q 001628 78 SEAVSTKFLQFLE----NQGILLNVTSTNLIEVWDIDKKR-LSHVH-----VCKEEITSFTIMQHS----NYMLLGDTAG 143 (1042)
Q Consensus 78 ~~~~~v~~l~fs~----~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~-----~h~~~It~v~~sp~~----~~l~sg~~dG 143 (1042)
.+..++-.++|.+ +...+++....+.+.++...... +..++ .|+....-++|+.+. .++++|+.-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 3446777788874 33334444455788888865433 22221 266667777887554 6899999999
Q ss_pred cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccc
Q 001628 144 KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQ 223 (1042)
Q Consensus 144 ~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~ 223 (1042)
.|+|.|+...++ .++..+|...|..+.++|. +.+++++++.|.+|++|++++..++..+||-
T Consensus 116 vIrVid~~~~~~--------------~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--- 177 (385)
T KOG1034|consen 116 VIRVIDVVSGQC--------------SKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--- 177 (385)
T ss_pred EEEEEecchhhh--------------ccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEeccc---
Confidence 999999998763 1223456789999999996 8899999999999999999999999999886
Q ss_pred cccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 224 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 224 ~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.+|...|.++.|+ .+|.+|++++.|.+|++|++..
T Consensus 178 --egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 178 --EGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred --ccccCcEEEEEEc-CCCCeeeccCCcceEEEEecCh
Confidence 8999999999998 9999999999999999999985
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.4e-16 Score=171.30 Aligned_cols=207 Identities=12% Similarity=0.216 Sum_probs=149.5
Q ss_pred cCceeeee-ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCC-EEEEEeCCCC
Q 001628 27 VDPRLVFH-YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQG-ILLNVTSTNL 103 (1042)
Q Consensus 27 ~~~~~~~~-~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~-~Lvs~s~dg~ 103 (1042)
|--+..+- .||.+.|.|+..+|.|.+||+|+.||+|+||.+.+ +...++.. ...|.+++|+|... .++++..++.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCc
Confidence 33344444 39999999999999999999999999999999882 33444433 35799999999754 2333333333
Q ss_pred EEE---------------------------------EEcCC---Cc--eeeeeecCCCeEEEEEeCCCCEEEEEeCCC--
Q 001628 104 IEV---------------------------------WDIDK---KR--LSHVHVCKEEITSFTIMQHSNYMLLGDTAG-- 143 (1042)
Q Consensus 104 I~v---------------------------------Wd~~~---~~--~~~~~~h~~~It~v~~sp~~~~l~sg~~dG-- 143 (1042)
+.| |.-.. .+ +.....|...|..+.|+..|.||++...++
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 333 33221 11 335556889999999999999999887643
Q ss_pred -cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccc
Q 001628 144 -KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL 222 (1042)
Q Consensus 144 -~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~ 222 (1042)
.|.|+++.... .+.|+ .. ..+.|.++.||| ...++++++. ..|++||+.....+.
T Consensus 546 ~~VliHQLSK~~---sQ~PF----~k-------skG~vq~v~FHP--s~p~lfVaTq-~~vRiYdL~kqelvK------- 601 (733)
T KOG0650|consen 546 KSVLIHQLSKRK---SQSPF----RK-------SKGLVQRVKFHP--SKPYLFVATQ-RSVRIYDLSKQELVK------- 601 (733)
T ss_pred ceEEEEeccccc---ccCch----hh-------cCCceeEEEecC--CCceEEEEec-cceEEEehhHHHHHH-------
Confidence 78888887764 22332 11 257899999999 6777887775 467899998754332
Q ss_pred ccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 223 QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 223 ~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.+......|.+++.+ |.|..|++|+.|+.++.+|+.-
T Consensus 602 -kL~tg~kwiS~msih-p~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 602 -KLLTGSKWISSMSIH-PNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred -HHhcCCeeeeeeeec-CCCCeEEEecCCCeeEEEEccc
Confidence 234446678889998 9999999999999999999874
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.7e-16 Score=158.12 Aligned_cols=291 Identities=12% Similarity=0.205 Sum_probs=187.8
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeC
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~ 259 (1042)
..|+.|++ .|.+|++|+.||.|.|||+.+... .+.+.+|-.+|+++||+ ++|..|++++.|..|.+||+
T Consensus 26 a~~~~Fs~--~G~~lAvGc~nG~vvI~D~~T~~i--------ar~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSR--WGDYLAVGCANGRVVIYDFDTFRI--------ARMLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEecc--CcceeeeeccCCcEEEEEccccch--------hhhhhccccceeEEEec-CCCCEeeeecCCceeEEEec
Confidence 78999999 899999999999999999999552 34568899999999998 99999999999999999999
Q ss_pred CCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeC
Q 001628 260 PSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALP 339 (1042)
Q Consensus 260 ~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 339 (1042)
..+ .+..++.+. .||....|... ....+ +...
T Consensus 95 ~~g------------s~l~rirf~-----spv~~~q~hp~---k~n~~----------------------------va~~ 126 (405)
T KOG1273|consen 95 LKG------------SPLKRIRFD-----SPVWGAQWHPR---KRNKC----------------------------VATI 126 (405)
T ss_pred cCC------------CceeEEEcc-----Cccceeeeccc---cCCeE----------------------------EEEE
Confidence 986 233222222 33443344321 00000 0000
Q ss_pred CCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeec
Q 001628 340 LSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG 419 (1042)
Q Consensus 340 ~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~ 419 (1042)
+. +.-.+..++. |.| +++.-.++
T Consensus 127 ~~---------------------------~sp~vi~~s~--------------------------~~h----~~Lp~d~d 149 (405)
T KOG1273|consen 127 ME---------------------------ESPVVIDFSD--------------------------PKH----SVLPKDDD 149 (405)
T ss_pred ec---------------------------CCcEEEEecC--------------------------Cce----eeccCCCc
Confidence 00 0001111110 000 00010111
Q ss_pred CccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC
Q 001628 420 NSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG 499 (1042)
Q Consensus 420 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~ 499 (1042)
+..-.+++ ...+.+.|+++++|...|-+.++|+.+-.+..-+++. ..
T Consensus 150 ~dln~sas------------------------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit---------s~ 196 (405)
T KOG1273|consen 150 GDLNSSAS------------------------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT---------SV 196 (405)
T ss_pred cccccccc------------------------cccccCCCCEEEEecCcceEEEEecchheeeeeeeec---------hh
Confidence 11000000 0016778889999999999999999987665555431 12
Q ss_pred CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCccc---ccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcE
Q 001628 500 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI---ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 576 (1042)
Q Consensus 500 ~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~ 576 (1042)
..|..+.|+..++.|++-+.|..||.|+...-.... +.. ..|.++-+ .....-.+++||.+|.+
T Consensus 197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e----------~~~K~qDv---VNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 197 QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE----------PEHKLQDV---VNKLQWKKCCFSGDGEY 263 (405)
T ss_pred eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC----------hhHHHHHH---HhhhhhhheeecCCccE
Confidence 678899999999999999999999999987322210 000 01110000 11234567899999999
Q ss_pred EEEEec-CCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 577 LAVGSD-QGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 577 La~gs~-dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
++.|+. ...++||....+.++ +.+.-. .....+.|.| -...+++- ..|.|++|...
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kg----E~l~DV~whp------~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKG----EELLDVNWHP------VRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCch----hheeeccccc------ceeeeeec-cCCceEEEEee
Confidence 888774 456999999988886 444321 2678899998 66667766 68999999844
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=158.90 Aligned_cols=199 Identities=12% Similarity=0.137 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeee
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHV 119 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~ 119 (1042)
..|+.|++-|.+||+|+.||+|.|||... ++-.++..|- .||++++|+++|+.|++++.|+.|.+||+..+.+..-..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~-~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV-RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc-cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 89999999999999999999999999883 2333444444 899999999999999999999999999999999777778
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE
Q 001628 120 CKEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF 198 (1042)
Q Consensus 120 h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~ 198 (1042)
.+.+|+.+.|+|.....++++ .+..-.+.++..... ..+|...... -.....+..|.+ .|+++++|.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------~~Lp~d~d~d----ln~sas~~~fdr--~g~yIitGt 172 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------SVLPKDDDGD----LNSSASHGVFDR--RGKYIITGT 172 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce------eeccCCCccc----cccccccccccC--CCCEEEEec
Confidence 899999999999875444443 344455555554321 1111111100 011222346888 799999999
Q ss_pred CCCeEEEEeccCCeeEEEeCCccccccccc-CCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 199 RDGLISLWDIRESKSIFSMGGNVLQSVYHE-TKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 199 ~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~-~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
..|.+.++|..+-+++..+ ... ...|..+-++ ..|..|+.-+.|..|+.+++.+
T Consensus 173 sKGkllv~~a~t~e~vas~--------rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASF--------RITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred CcceEEEEecchheeeeee--------eechheeeeEEEEe-ccCcEEEEecCCceEEEEehhh
Confidence 9999999999998776553 122 3678889898 8999999999999999999885
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.6e-14 Score=165.77 Aligned_cols=373 Identities=23% Similarity=0.371 Sum_probs=265.0
Q ss_pred eeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCC--eEEEEecCCCcceEEEEE-ecCCC-EEEEEeC-CCCEEEE
Q 001628 33 FHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNN--TQALLESSEAVSTKFLQF-LENQG-ILLNVTS-TNLIEVW 107 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~--~~~~~~~~~~~~v~~l~f-s~~~~-~Lvs~s~-dg~I~vW 107 (1042)
...++...+.++.|++.+..++.++.|+.+.+|+.... ....+.......+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 44678889999999999999999999999999998844 344444433245666777 77777 5555455 8999999
Q ss_pred EcCC--CceeeeeecCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 108 DIDK--KRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 108 d~~~--~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
+... .....+..|...|.+++|+|++.++++++. ++.+++|++.... .... ...|...|.++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~v~~~~ 205 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLST------------LAGHTDPVSSLA 205 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEe------------eccCCCceEEEE
Confidence 9997 447888999999999999999999999986 9999999998743 1111 122567999999
Q ss_pred EccCCCCC-eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcc
Q 001628 185 PQPTAESK-RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSIL 263 (1042)
Q Consensus 185 ~~p~~d~~-~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~ 263 (1042)
|+| ++. .+++++.|+.|++||...+..+.. .+..|.... ...|+ +++..+++++.|+.+++|+.....
T Consensus 206 ~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 206 FSP--DGGLLIASGSSDGTIRLWDLSTGKLLRS-------TLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EcC--CcceEEEEecCCCcEEEEECCCCcEEee-------ecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCC
Confidence 998 776 555558999999998886555441 235555554 33787 888899999999999999998630
Q ss_pred ccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCC
Q 001628 264 NLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEP 343 (1042)
Q Consensus 264 ~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 343 (1042)
. .+.
T Consensus 275 ~----------------------------------------~~~------------------------------------ 278 (466)
T COG2319 275 S----------------------------------------LLR------------------------------------ 278 (466)
T ss_pred c----------------------------------------EEE------------------------------------
Confidence 0 000
Q ss_pred eeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccc
Q 001628 344 CIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFI 423 (1042)
Q Consensus 344 ~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~ 423 (1042)
.+ ..|...+.++.|.
T Consensus 279 -------------------------------~~----------------------------~~~~~~v~~~~~~------ 293 (466)
T COG2319 279 -------------------------------TL----------------------------SGHSSSVLSVAFS------ 293 (466)
T ss_pred -------------------------------EE----------------------------ecCCccEEEEEEC------
Confidence 00 0222333344332
Q ss_pred cccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeE
Q 001628 424 LSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLT 503 (1042)
Q Consensus 424 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~ 503 (1042)
+++..+++++.|+.+++||........... ...|...+.
T Consensus 294 ---------------------------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 332 (466)
T COG2319 294 ---------------------------------PDGKLLASGSSDGTVRLWDLETGKLLSSLT--------LKGHEGPVS 332 (466)
T ss_pred ---------------------------------CCCCEEEEeeCCCcEEEEEcCCCceEEEee--------ecccCCceE
Confidence 333466678888999999888765433321 135666899
Q ss_pred EEEEeCCCCEEEEE-eccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEE-Ee
Q 001628 504 ALYYDGTSRVLVSG-DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV-GS 581 (1042)
Q Consensus 504 ~l~fsp~~~~Lasg-~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~-gs 581 (1042)
.+.|.+++..++.+ ..|+.+.+|+...... . .. .... ..+..+.+++ ...+.. +.
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~--~~---------~~~~----------~~~~~~~~~~-~~~~~~~~~ 389 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-L--KT---------LEGH----------SNVLSVSFSP-DGRVVSSGS 389 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCce-e--EE---------ecCC----------ceEEEEEECC-CCCEEEEec
Confidence 99994332455555 6789999999876541 1 00 1111 2288889988 533333 78
Q ss_pred cCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC
Q 001628 582 DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 582 ~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
.++.+.+|+............. ...+....+++ ++..+++++.++.+.+|+..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFSP------DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccCC---CCcEEEEEECC------CCcEEEEecCCCcEEEEeccC
Confidence 9999999999988776333221 04889999998 899999999999999999885
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2e-16 Score=165.11 Aligned_cols=297 Identities=17% Similarity=0.260 Sum_probs=198.5
Q ss_pred EEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeec-----CCCeEEEEEeCC-------CCEEEEEeCCCcEEEEEc
Q 001628 86 LQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVC-----KEEITSFTIMQH-------SNYMLLGDTAGKISVLKL 150 (1042)
Q Consensus 86 l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h-----~~~It~v~~sp~-------~~~l~sg~~dG~I~vwd~ 150 (1042)
+..-|....++++-.+ ..+.||=.+... ..++.| +..-.|++|... |+|+|+|+.+..|.|||+
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence 4445655566666443 234444333333 122222 233456666532 489999999999999998
Q ss_pred cCCccceeeeeeeccc--------ccccCc-cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcc
Q 001628 151 DQESSQIVKMKYIIPL--------SASHGN-EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNV 221 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~--------~~~~~~-~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~ 221 (1042)
+-...-+..+ .+.. ....++ ...|...|.+++|+-. ..+.|++|+.|.+|++||+.++++...
T Consensus 210 DI~d~v~P~~--~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s----- 281 (463)
T KOG0270|consen 210 DIVDAVLPCV--TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSS----- 281 (463)
T ss_pred ccccccccce--eechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCccee-----
Confidence 7643111100 0100 000001 2356788999999985 678999999999999999999776554
Q ss_pred cccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCC
Q 001628 222 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 301 (1042)
Q Consensus 222 ~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~ 301 (1042)
...|..+|.++.|++.....|++|+.||++.+.|.+... -....|..
T Consensus 282 ---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~---------------------------~s~~~wk~--- 328 (463)
T KOG0270|consen 282 ---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS---------------------------NSGKEWKF--- 328 (463)
T ss_pred ---hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc---------------------------ccCceEEe---
Confidence 367999999999997778999999999999999998520 00112221
Q ss_pred CCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccc
Q 001628 302 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 381 (1042)
Q Consensus 302 ~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 381 (1042)
.|. =+-..|+
T Consensus 329 -------~g~-----------------------------------------------------------VEkv~w~---- 338 (463)
T KOG0270|consen 329 -------DGE-----------------------------------------------------------VEKVAWD---- 338 (463)
T ss_pred -------ccc-----------------------------------------------------------eEEEEec----
Confidence 000 0122344
Q ss_pred eeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccE
Q 001628 382 ERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNL 461 (1042)
Q Consensus 382 e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (1042)
+.....
T Consensus 339 --------------------------------------------------------------------------~~se~~ 344 (463)
T KOG0270|consen 339 --------------------------------------------------------------------------PHSENS 344 (463)
T ss_pred --------------------------------------------------------------------------CCCcee
Confidence 011236
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCccccccee
Q 001628 462 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFL 540 (1042)
Q Consensus 462 l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~ 540 (1042)
++++..||+|+-+|++... .+++++ ..|..+|++|++++.. .+|++++.|+.|++|++....... .
T Consensus 345 f~~~tddG~v~~~D~R~~~-~~vwt~--------~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----v 411 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPG-KPVWTL--------KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS----V 411 (463)
T ss_pred EEEecCCceEEeeecCCCC-CceeEE--------EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc----c
Confidence 7788999999999998764 556655 7899999999999876 678999999999999998654422 0
Q ss_pred eecccccCccceeeeEEEeecCCCeEEEEEecCC-cEEEEEecCCcEEEEeccCCeE
Q 001628 541 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-QHLAVGSDQGYVYLLDTEGPTV 596 (1042)
Q Consensus 541 ~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg-~~La~gs~dg~V~vwD~~~~~~ 596 (1042)
..|. . .-+...|.++.|+- .+||+|+..+.++|||+.+...
T Consensus 412 --------~~~~---~----~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 412 --------KEHS---F----KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred --------cccc---c----cccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 1221 0 01457778888875 5799999999999999976543
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=2.5e-16 Score=157.51 Aligned_cols=202 Identities=12% Similarity=0.186 Sum_probs=151.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEecC------C-------CeEEEEecCCCcceEEEEEe-------cCCCEEEEEeCCC
Q 001628 43 KFAYDPLQKILAAATKDGRIKLYGRH------N-------NTQALLESSEAVSTKFLQFL-------ENQGILLNVTSTN 102 (1042)
Q Consensus 43 ~la~sp~~~~LA~gs~dg~I~iw~~~------g-------~~~~~~~~~~~~~v~~l~fs-------~~~~~Lvs~s~dg 102 (1042)
.+-|+|||..|.+-+.|..+.+|+++ + ..+..+.-.....|..-+|. |+..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 46799999999999999999999876 1 12233444445566666665 5677888889999
Q ss_pred CEEEEEcCCCceeee---eecCCCe---EEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccC
Q 001628 103 LIEVWDIDKKRLSHV---HVCKEEI---TSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 103 ~I~vWd~~~~~~~~~---~~h~~~I---t~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~ 176 (1042)
-|.+||.-++++... ..|...+ .|++|+|||.+|+.|. ...|+++|+..........+... .+ ..+.
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-----~~-k~gq 206 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-----KG-KFGQ 206 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-----cc-cccc
Confidence 999999999985433 2355444 5899999999998876 45899999955432111111111 11 1223
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec-CCeEE
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS-NGEIL 255 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~-dG~I~ 255 (1042)
.+-+.+++|+|. +...+++++....+-|+.-...++++. +.+|.+.|+.++|. ++|+.|.+|.. |-.|.
T Consensus 207 ~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~l--------lggh~gGvThL~~~-edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 207 KGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQL--------LGGHGGGVTHLQWC-EDGNKLFSGARKDDKIL 276 (406)
T ss_pred cceeeeeeccCC-CCcceeeecccceeeeEecCCCCceee--------ecccCCCeeeEEec-cCcCeecccccCCCeEE
Confidence 577889999996 788999999999999999888776655 46889999999996 99999999975 66899
Q ss_pred EEeCCC
Q 001628 256 IWGVPS 261 (1042)
Q Consensus 256 iWd~~~ 261 (1042)
.||++.
T Consensus 277 ~WDiR~ 282 (406)
T KOG2919|consen 277 CWDIRY 282 (406)
T ss_pred EEeehh
Confidence 999986
No 156
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-14 Score=163.43 Aligned_cols=453 Identities=15% Similarity=0.179 Sum_probs=259.7
Q ss_pred eecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCC---CEEEEEeCCCCEEEEEc
Q 001628 34 HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQ---GILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~---~~Lvs~s~dg~I~vWd~ 109 (1042)
--|.+..-..-.|++|++.|...+. ..|.||.... .....+.. +..+++.+.+.|.. .++++++.||+|++||.
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~-~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLED-HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhccc-ccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 4455655566789999999888775 6799999872 22233334 44888889998854 47889999999999999
Q ss_pred CCCceeeeeecCCCeEEEEEeCC----CCEEEEEeCC------------CcEEEEEccCCc-------------------
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQH----SNYMLLGDTA------------GKISVLKLDQES------------------- 154 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~----~~~l~sg~~d------------G~I~vwd~~~~~------------------- 154 (1042)
..+.+.....-..++.++.+.|. ...++.+.++ +.++-+.+.+..
T Consensus 90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 98875555444444444333211 0111111111 111111111100
Q ss_pred ----cceee-----eeeecccccc----cCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcc
Q 001628 155 ----SQIVK-----MKYIIPLSAS----HGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNV 221 (1042)
Q Consensus 155 ----~~~~~-----~~~~ip~~~~----~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~ 221 (1042)
..... ..|.+|.... +.....|.-.+++.++|| ++.+++++..||.|.+|.--..... ...
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~----~~t 243 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDD----SET 243 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEeccccccc----ccc
Confidence 00000 0111111110 001334556689999999 8999999999999999965431100 112
Q ss_pred cccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCC
Q 001628 222 LQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADG 301 (1042)
Q Consensus 222 ~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~ 301 (1042)
.+.+.-|..+|.+++|+ ++|.+|++|+..|.+.+|.+.++. .+..|- ++ .||.
T Consensus 244 ~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~--------kqfLPR----Lg-----s~I~--------- 296 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK--------KQFLPR----LG-----SPIL--------- 296 (792)
T ss_pred ceEEEecccccceeEEe-cCCceEeecccceEEEEEeecCCC--------cccccc----cC-----CeeE---------
Confidence 34457788999999999 999999999999999999999852 010110 01 1222
Q ss_pred CCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccc
Q 001628 302 KASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQI 381 (1042)
Q Consensus 302 ~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 381 (1042)
++.+.++ .+...+.++|.+|++.....+
T Consensus 297 --------------------------------------------~i~vS~d--------s~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 297 --------------------------------------------HIVVSPD--------SDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred --------------------------------------------EEEEcCC--------CCeEEEEecCceEEEEeccch
Confidence 2222222 223366777888888875554
Q ss_pred eeeeccCCCCCC-CCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCcc
Q 001628 382 ERYLLQYQSRSP-PSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKN 460 (1042)
Q Consensus 382 e~~~~~~~~~~~-~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1042)
+....-++-... +.. ....++-.+.+. +.|.-+
T Consensus 325 ~~k~tIsgi~~~~~~~-------k~~~~~l~t~~~---------------------------------------idpr~~ 358 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPST-------KTRPQSLTTGVS---------------------------------------IDPRTN 358 (792)
T ss_pred hhhhhccCccCCCccc-------cccccccceeEE---------------------------------------EcCCCC
Confidence 422111110000 000 000000011111 334344
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccccccccCC---CCCCCeEEEEEeCCCCEEEEEec--------cc--eEEEEE
Q 001628 461 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS---LSGIPLTALYYDGTSRVLVSGDQ--------SG--MVRIFK 527 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~---~~~~~V~~l~fsp~~~~Lasg~~--------dG--~V~vw~ 527 (1042)
.++-.+..|.|.+||+.+.... +++.---++... .+...+++++.+..+.+++|+-. || .+++|.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i--~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTI--YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred ceeecCCCceEEEEecccccee--eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 6666788999999998765332 333211111111 23467899999999999998753 33 457788
Q ss_pred eccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEec-CC-cEEEEEecCCcEEEEeccCCeEE------Ee
Q 001628 528 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-NS-QHLAVGSDQGYVYLLDTEGPTVL------YQ 599 (1042)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp-dg-~~La~gs~dg~V~vwD~~~~~~~------~~ 599 (1042)
...... +|.-.+ ....-|...+.+.++.+ .. ...++++.||.++||-+.+.+-+ +.
T Consensus 437 ~n~~~k----t~~L~T------------~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 437 YNPNSK----TFILNT------------KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred EcCCcc----eeEEEE------------EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 776543 221000 11122334444444443 33 37899999999999987432222 11
Q ss_pred cc-cccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC
Q 001628 600 KH-IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 600 ~~-~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
.+ ....|..++++++|+. ||.+|+++. |++|.+||..+
T Consensus 501 c~~i~sy~k~~i~a~~fs~------dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQ------DGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred EeeeeccccCcccchhhcC------CCcEEEEec-CCEEEEecCCC
Confidence 11 2234678999999998 886666555 88999999875
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=4.7e-16 Score=167.34 Aligned_cols=306 Identities=14% Similarity=0.171 Sum_probs=212.1
Q ss_pred EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSN--YMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~--~l~sg~~dG~I~vwd~~ 151 (1042)
++.+|. ..|.+|...|.|.+|++|+.||+|+||.+.++.........+.|.|++|+|.+. .||++-... +.+.+-.
T Consensus 395 vyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 395 VYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred eEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 455665 788899999999999999999999999999999877778888999999999884 455554443 6666532
Q ss_pred CCcccee---e-eeeecc---------cccccC----------ccccCCCCEEEEEEccCCCCCeEEEEECC---CeEEE
Q 001628 152 QESSQIV---K-MKYIIP---------LSASHG----------NEVSGDPAVINILPQPTAESKRILIIFRD---GLISL 205 (1042)
Q Consensus 152 ~~~~~~~---~-~~~~ip---------~~~~~~----------~~~~~~~~V~~v~~~p~~d~~~lls~~~d---g~I~v 205 (1042)
-+..-.. . .-...| ..|... ....|..+|..+.||. .|.+|++...+ ..|.|
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEE
Confidence 2210000 0 000010 011111 0234667999999998 89999998864 46889
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYK 285 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~ 285 (1042)
.++...+... .+....+.|.++.|+ |...+|++++.. .|++||+..+.... ++
T Consensus 551 HQLSK~~sQ~--------PF~kskG~vq~v~FH-Ps~p~lfVaTq~-~vRiYdL~kqelvK------------kL----- 603 (733)
T KOG0650|consen 551 HQLSKRKSQS--------PFRKSKGLVQRVKFH-PSKPYLFVATQR-SVRIYDLSKQELVK------------KL----- 603 (733)
T ss_pred EecccccccC--------chhhcCCceeEEEec-CCCceEEEEecc-ceEEEehhHHHHHH------------HH-----
Confidence 9998755332 234567789999998 888888887765 79999987631110 11
Q ss_pred CCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEE
Q 001628 286 LDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFL 365 (1042)
Q Consensus 286 ~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~ 365 (1042)
+....|..
T Consensus 604 -----~tg~kwiS------------------------------------------------------------------- 611 (733)
T KOG0650|consen 604 -----LTGSKWIS------------------------------------------------------------------- 611 (733)
T ss_pred -----hcCCeeee-------------------------------------------------------------------
Confidence 00011110
Q ss_pred EEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCC
Q 001628 366 LLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFE 445 (1042)
Q Consensus 366 vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 445 (1042)
.+
T Consensus 612 -----------------------------------------------~m------------------------------- 613 (733)
T KOG0650|consen 612 -----------------------------------------------SM------------------------------- 613 (733)
T ss_pred -----------------------------------------------ee-------------------------------
Confidence 01
Q ss_pred cCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEE
Q 001628 446 TKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRI 525 (1042)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~v 525 (1042)
++++.|+-|+.|+.|+.+..+|+.-.. .+. +.+..|...|++++|++.-.+||+|+.||++.|
T Consensus 614 --------sihp~GDnli~gs~d~k~~WfDldlss-kPy--------k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 614 --------SIHPNGDNLILGSYDKKMCWFDLDLSS-KPY--------KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred --------eecCCCCeEEEecCCCeeEEEEcccCc-chh--------HHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 156677789999999999999988542 111 223688899999999999999999999999999
Q ss_pred EEeccCCcccccceeeecccccCccceeeeEEEeecC----CCeEEEEEecCCcEEEEEecCCcEEEE
Q 001628 526 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKIN----GSIISLNMNRNSQHLAVGSDQGYVYLL 589 (1042)
Q Consensus 526 w~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~V~~l~~spdg~~La~gs~dg~V~vw 589 (1042)
|.-........+. -.+|.-.+.+|. ..|....|+|...+|.+++.||+|++|
T Consensus 677 fhg~VY~Dl~qnp------------liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNP------------LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCC------------ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9754332222111 123334444444 449999999999999999999999998
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.8e-16 Score=165.49 Aligned_cols=203 Identities=13% Similarity=0.216 Sum_probs=158.6
Q ss_pred cccCceEEEEEcCC-------CCEEEEEEcCCeEEEEecC--CCeEEEEe-------------------cCCCcceEEEE
Q 001628 36 GFPSGCNKFAYDPL-------QKILAAATKDGRIKLYGRH--NNTQALLE-------------------SSEAVSTKFLQ 87 (1042)
Q Consensus 36 G~~~~v~~la~sp~-------~~~LA~gs~dg~I~iw~~~--g~~~~~~~-------------------~~~~~~v~~l~ 87 (1042)
=+|..+.|++|-.. |+++|+|+-|..|.|||.+ ..+...+. ..|...|.+|.
T Consensus 171 ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 171 ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 45777788888543 5799999999999999987 11111111 12334566677
Q ss_pred EecC-CCEEEEEeCCCCEEEEEcCCCceeee-eecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeec
Q 001628 88 FLEN-QGILLNVTSTNLIEVWDIDKKRLSHV-HVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYII 164 (1042)
Q Consensus 88 fs~~-~~~Lvs~s~dg~I~vWd~~~~~~~~~-~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~i 164 (1042)
|..+ .+.|++|+.|.+|++||+.++++... ..|.+.|.++.|+|.. .+|++|+.||+|.+.|.+.... .
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----s---- 322 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----S---- 322 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----c----
Confidence 7764 45899999999999999999995544 4588999999999876 7899999999999999985321 1
Q ss_pred ccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCC-eeEEEeCCcccccccccCCceeEEEEEccCCC
Q 001628 165 PLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRES-KSIFSMGGNVLQSVYHETKQVTSACWACPIGS 243 (1042)
Q Consensus 165 p~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~-~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~ 243 (1042)
+..|+ -.+.|-.++|+|. ..+.++++..||+|+-+|++.. ++++. ...|..+|.+++++.....
T Consensus 323 ~~~wk------~~g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~~~~vwt--------~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 323 GKEWK------FDGEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNPGKPVWT--------LKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred CceEE------eccceEEEEecCC-CceeEEEecCCceEEeeecCCCCCceeE--------EEeccCCcceEEecCCCCc
Confidence 11111 1578999999996 6788999999999999999985 44444 5889999999999855677
Q ss_pred EEEEEecCCeEEEEeCCC
Q 001628 244 KVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 244 ~l~sg~~dG~I~iWd~~~ 261 (1042)
.+++++.|+.+++|++..
T Consensus 388 ~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ceeeccccceEEEEeecC
Confidence 899999999999999986
No 159
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1e-17 Score=183.88 Aligned_cols=256 Identities=16% Similarity=0.297 Sum_probs=197.5
Q ss_pred EEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 94 ILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 94 ~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
+++.+..+-.++|||.+ ....|...|.|+..-..++.+++|+.|..+-+|.+..... .+. .
T Consensus 6 ~~m~~~~~t~Lr~~~~~-----~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~---i~S-----------~ 66 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR-----EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA---ITS-----------L 66 (825)
T ss_pred ccceeeeeeccccccch-----hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch---hhe-----------e
Confidence 44555555667788754 3445777788888877789999999999999998876431 111 2
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCe
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
..|..+|-++.|++ +...|+.|..+|+|++||+.+++ ..+++.+|...+.++.|+ |-+.+++.|+.|+.
T Consensus 67 ~~hespIeSl~f~~--~E~LlaagsasgtiK~wDleeAk--------~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 67 TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLEEAK--------IVRTLTGHLLNITSVDFH-PYGEFFASGSTDTD 135 (825)
T ss_pred eccCCcceeeecCc--chhhhcccccCCceeeeehhhhh--------hhhhhhccccCcceeeec-cceEEecccccccc
Confidence 34688999999999 78889999999999999999854 445678999999999998 99999999999999
Q ss_pred EEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeeccccccee
Q 001628 254 ILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRT 333 (1042)
Q Consensus 254 I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~ 333 (1042)
+.+||++.. +
T Consensus 136 ~~iwD~Rk~-----------------------------------------G----------------------------- 145 (825)
T KOG0267|consen 136 LKIWDIRKK-----------------------------------------G----------------------------- 145 (825)
T ss_pred ceehhhhcc-----------------------------------------C-----------------------------
Confidence 999999841 0
Q ss_pred EEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeE
Q 001628 334 TKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITA 413 (1042)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~ 413 (1042)
.++.|+ .|...|.+
T Consensus 146 --------------------------------------c~~~~~----------------------------s~~~vv~~ 159 (825)
T KOG0267|consen 146 --------------------------------------CSHTYK----------------------------SHTRVVDV 159 (825)
T ss_pred --------------------------------------ceeeec----------------------------CCcceeEE
Confidence 111222 23333444
Q ss_pred EEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccc
Q 001628 414 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK 493 (1042)
Q Consensus 414 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~ 493 (1042)
+. +.|+|.+++.|++|.+++|||...+.+. .
T Consensus 160 l~---------------------------------------lsP~Gr~v~~g~ed~tvki~d~~agk~~----------~ 190 (825)
T KOG0267|consen 160 LR---------------------------------------LSPDGRWVASGGEDNTVKIWDLTAGKLS----------K 190 (825)
T ss_pred Ee---------------------------------------ecCCCceeeccCCcceeeeecccccccc----------c
Confidence 44 5566669999999999999999988664 3
Q ss_pred cCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC
Q 001628 494 DFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 573 (1042)
Q Consensus 494 ~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd 573 (1042)
++..|...|.++.|+|..-+|+.|+.|++|++|++.+..... .. .... ..|.+++|+|+
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~--s~---------~~~~----------~~v~~~~fn~~ 249 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS--SG---------KPET----------DGVRSLAFNPD 249 (825)
T ss_pred ccccccccccccccCchhhhhccCCCCceeeeeccceeEEee--cc---------CCcc----------CCceeeeecCC
Confidence 347899999999999999999999999999999998654432 11 1112 78999999999
Q ss_pred CcEEEEEecCCc
Q 001628 574 SQHLAVGSDQGY 585 (1042)
Q Consensus 574 g~~La~gs~dg~ 585 (1042)
+..+++|.....
T Consensus 250 ~~~~~~G~q~sl 261 (825)
T KOG0267|consen 250 GKIVLSGEQISL 261 (825)
T ss_pred ceeeecCchhhh
Confidence 999999887644
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=2e-16 Score=171.29 Aligned_cols=274 Identities=15% Similarity=0.220 Sum_probs=189.1
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEe
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
.|..++|-| ||..|+.+..+ .+.+||.+. |..++++.+|...|.+++|+ .||..|++|+.|..+.+|+
T Consensus 14 ci~d~afkP--DGsqL~lAAg~-rlliyD~nd--------G~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKP--DGTQLILAAGS-RLLVYDTSD--------GTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECC--CCceEEEecCC-EEEEEeCCC--------cccccccccccceEEEEEEc-cCCceeccCCCceeEEEec
Confidence 788999999 99988887655 455999998 55677789999999999998 9999999999999999998
Q ss_pred CCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEee
Q 001628 259 VPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLAL 338 (1042)
Q Consensus 259 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 338 (1042)
..-....+ +
T Consensus 82 ~klEG~Lk-----------------------------Y------------------------------------------ 90 (1081)
T KOG1538|consen 82 SKLEGILK-----------------------------Y------------------------------------------ 90 (1081)
T ss_pred ccccceee-----------------------------e------------------------------------------
Confidence 65310000 0
Q ss_pred CCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEee
Q 001628 339 PLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLIT 418 (1042)
Q Consensus 339 ~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~ 418 (1042)
.|...|.|+.|.|
T Consensus 91 -------------------------------------------------------------------SH~D~IQCMsFNP 103 (1081)
T KOG1538|consen 91 -------------------------------------------------------------------SHNDAIQCMSFNP 103 (1081)
T ss_pred -------------------------------------------------------------------ccCCeeeEeecCc
Confidence 2334444555554
Q ss_pred cCccccccchhHHHhhhhcCCCCC-CCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCC
Q 001628 419 GNSFILSSADEDYSLLAKSVPPLL-DFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSL 497 (1042)
Q Consensus 419 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~ 497 (1042)
....+++.+-..+ .+|+...... ..........-++..+|.+++.|..||+|.|-+.....-..+- .-.+
T Consensus 104 ~~h~LasCsLsdF-glWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~--------Rpgg 174 (1081)
T KOG1538|consen 104 ITHQLASCSLSDF-GLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIE--------RPGG 174 (1081)
T ss_pred hHHHhhhcchhhc-cccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEe--------CCCC
Confidence 4444443221111 1111110000 0000000000116677889999999999999877654322222 1145
Q ss_pred CCCCeEEEEEeCCC-----CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEec
Q 001628 498 SGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 572 (1042)
Q Consensus 498 ~~~~V~~l~fsp~~-----~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp 572 (1042)
.+.+|++++|+|.+ ..+++.+...++.+|.+++.....+.++ .-...|+.+.+
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L----------------------~FdP~CisYf~ 232 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL----------------------NFDPCCISYFT 232 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC----------------------CCCchhheecc
Confidence 67999999999975 5788888888888888876544322222 12346889999
Q ss_pred CCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 573 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 573 dg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+|.++.+|+.|+.+.+|-..+-.+ +.... ....|++++..| ++++++.|+.||+|..|++.
T Consensus 233 NGEy~LiGGsdk~L~~fTR~GvrL---GTvg~-~D~WIWtV~~~P------NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRDGVRL---GTVGE-QDSWIWTVQAKP------NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCcEEEEccCCCceEEEeecCeEE---eeccc-cceeEEEEEEcc------CCceEEEEEccCeeehhhhH
Confidence 999999999999999998877544 33222 345999999999 99999999999999999854
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=158.52 Aligned_cols=278 Identities=15% Similarity=0.169 Sum_probs=182.0
Q ss_pred eeecCCCeEEEEEeCCC--CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC--ccccCCCCEEEEEEccCCCCC
Q 001628 117 VHVCKEEITSFTIMQHS--NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG--NEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 117 ~~~h~~~It~v~~sp~~--~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~--~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
...|.+.|.-+..++-+ .+.++-++.|.|.||++......+....+.++...... ....|.+.=.++.|+|. ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~-~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI-KTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc-ccc
Confidence 34566777777777655 56667778999999998764321111111111100000 02345677788999996 666
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCc
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGT 272 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~ 272 (1042)
.|++|..-+.|++|...++.-... ...+.+|...|-.++|++.....|++|+.||+|+|||++.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--------- 291 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVD-----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--------- 291 (440)
T ss_pred ccccCccccceEeeeeccCceeec-----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC---------
Confidence 799999999999999998764332 345577999999999995567899999999999999999730
Q ss_pred cccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccC
Q 001628 273 QITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISS 352 (1042)
Q Consensus 273 ~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1042)
+...++
T Consensus 292 -----------------------------~~~~~~--------------------------------------------- 297 (440)
T KOG0302|consen 292 -----------------------------KKAAVS--------------------------------------------- 297 (440)
T ss_pred -----------------------------ccceeE---------------------------------------------
Confidence 111111
Q ss_pred CCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHH
Q 001628 353 SSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYS 432 (1042)
Q Consensus 353 s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~ 432 (1042)
+ ..|.+.|..+.|+
T Consensus 298 -------------~--------------------------------------kAh~sDVNVISWn--------------- 311 (440)
T KOG0302|consen 298 -------------T--------------------------------------KAHNSDVNVISWN--------------- 311 (440)
T ss_pred -------------e--------------------------------------eccCCceeeEEcc---------------
Confidence 0 1333344444422
Q ss_pred hhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCce-eeeeeccccccccCCCCCCCeEEEEEeCCC
Q 001628 433 LLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLF-LLILSLKQQSEKDFSLSGIPLTALYYDGTS 511 (1042)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~-~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~ 511 (1042)
....+|++|+.||+++|||+..-.. .++. .+..|..+|++|.|+|..
T Consensus 312 ------------------------r~~~lLasG~DdGt~~iwDLR~~~~~~pVA--------~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 312 ------------------------RREPLLASGGDDGTLSIWDLRQFKSGQPVA--------TFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ------------------------CCcceeeecCCCceEEEEEhhhccCCCcce--------eEEeccCCeeEEEecccc
Confidence 1223899999999999999875322 2222 337899999999999964
Q ss_pred -CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeE-EEeecCCCeEEEEEecCC-cEEEEEecCCc
Q 001628 512 -RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSV-KVMKINGSIISLNMNRNS-QHLAVGSDQGY 585 (1042)
Q Consensus 512 -~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~V~~l~~spdg-~~La~gs~dg~ 585 (1042)
..|++++.|..|.|||+.......+..- ..-.+.+...|+. .++..+..|..|.|++.. .+|++-+.||.
T Consensus 360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~----~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSVEADEEEIDQ----EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred CceEEeccCCCcEEEEEeeccCChhhhcc----ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 7888899999999999986544210000 0001112222333 334456788999999854 67777777775
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=3e-16 Score=160.18 Aligned_cols=215 Identities=15% Similarity=0.211 Sum_probs=163.7
Q ss_pred CcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-----------------CCeEEEEecCCCcceEEEEE
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-----------------NNTQALLESSEAVSTKFLQF 88 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-----------------g~~~~~~~~~~~~~v~~l~f 88 (1042)
.+..+.+-|||.-..|.+..+- +..+.|+=+..|+|+||+.. -+...++.+|.... ..|+|
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG-y~LdW 219 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG-YGLDW 219 (440)
T ss_pred cccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccc-eeeec
Confidence 3444556677766666555443 44567777778999999975 12344555665444 45999
Q ss_pred ec-CCCEEEEEeCCCCEEEEEcCCCc----eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeee
Q 001628 89 LE-NQGILLNVTSTNLIEVWDIDKKR----LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKY 162 (1042)
Q Consensus 89 s~-~~~~Lvs~s~dg~I~vWd~~~~~----~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~ 162 (1042)
+| ..+.|++|..-+.|++|...++. ...+.+|...|-.+.|||.. ..+++|+-||+|+|||+.....+....
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-- 297 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-- 297 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--
Confidence 99 23469999999999999998876 34566799999999999976 688899999999999999874211111
Q ss_pred ecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCC
Q 001628 163 IIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIG 242 (1042)
Q Consensus 163 ~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g 242 (1042)
...|.+.|+.|.|+. .-..|++|+.||+++|||+++-+. +.....+..|..+|+++.|++.+.
T Consensus 298 ----------~kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~-----~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 298 ----------TKAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKS-----GQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred ----------eeccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccC-----CCcceeEEeccCCeeEEEeccccC
Confidence 123567999999998 555999999999999999987431 234456688999999999995567
Q ss_pred CEEEEEecCCeEEEEeCCC
Q 001628 243 SKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 243 ~~l~sg~~dG~I~iWd~~~ 261 (1042)
..|++++.|..|.+||+.-
T Consensus 361 s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceEEeccCCCcEEEEEeec
Confidence 8899999999999999975
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=1.5e-14 Score=149.64 Aligned_cols=174 Identities=13% Similarity=0.165 Sum_probs=133.3
Q ss_pred cCCCcceEEEEEecCCC-EEEEEeCCCCEEEEEcCCCc----------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcE
Q 001628 77 SSEAVSTKFLQFLENQG-ILLNVTSTNLIEVWDIDKKR----------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKI 145 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~~~~----------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I 145 (1042)
.|...+|..+.|.++.. .|++|+.|..|++|-+.... +..+..|...|+++.|+|+|+.|++|+++|.|
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 34557899999999876 99999999999999875432 34566799999999999999999999999999
Q ss_pred EEEEccCCccceeeee-eecccccc-cCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccc
Q 001628 146 SVLKLDQESSQIVKMK-YIIPLSAS-HGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQ 223 (1042)
Q Consensus 146 ~vwd~~~~~~~~~~~~-~~ip~~~~-~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~ 223 (1042)
.+|............. ...+..|. ......|...|..++|+| +++.+++++-|+++++||+..|..+..
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~------- 160 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI------- 160 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee-------
Confidence 9998763110000000 00000000 000344678999999999 999999999999999999999776554
Q ss_pred cccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 224 SVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 224 ~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+..|...+..++|. |-++++++-+.|...+.+.+..
T Consensus 161 -~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 161 -LDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred -ccccccccceeecc-hhhhhhhhhccCcccceeeeee
Confidence 47889999999998 9999999999998666666553
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.9e-15 Score=168.41 Aligned_cols=305 Identities=19% Similarity=0.280 Sum_probs=202.1
Q ss_pred ceEEEEEecCCCEEEEEeCCCCEEEEEcCCCcee-eeee---cCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEccCC--
Q 001628 82 STKFLQFLENQGILLNVTSTNLIEVWDIDKKRLS-HVHV---CKEEITSFTIMQH--SNYMLLGDTAGKISVLKLDQE-- 153 (1042)
Q Consensus 82 ~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~-~~~~---h~~~It~v~~sp~--~~~l~sg~~dG~I~vwd~~~~-- 153 (1042)
+-+.+.|+|-..+++++++.-.|+|||.+.++.. .+.. ....|+.+.+..+ ..++++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3455889998889999988889999999988843 3322 3468999888654 478999999999999983322
Q ss_pred -ccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCce
Q 001628 154 -SSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 154 -~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I 232 (1042)
...++..-..+ .+......+.=.-+.|.- ...+|++++.-..|+|||......+..+. .+...-|
T Consensus 1146 ~~~eLVTaw~~L-----s~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-------~~s~t~v 1211 (1387)
T KOG1517|consen 1146 KKPELVTAWSSL-----SDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADIP-------YGSSTLV 1211 (1387)
T ss_pred CCceeEEeeccc-----cccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeecc-------cCCCccc
Confidence 11121111111 111111111113367777 67778888889999999999877665531 3345667
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEeccc
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGAS 312 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~ 312 (1042)
+++.-....|+.++.|..||.|++||.+... - +.
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------------~-------------------------ds-------- 1245 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAP-------------P-------------------------DS-------- 1245 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCC-------------c-------------------------cc--------
Confidence 7776554668999999999999999998620 0 00
Q ss_pred ccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCC
Q 001628 313 DFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRS 392 (1042)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~ 392 (1042)
.+.+|.
T Consensus 1246 -----------------------------------------------------------~v~~~R--------------- 1251 (1387)
T KOG1517|consen 1246 -----------------------------------------------------------LVCVYR--------------- 1251 (1387)
T ss_pred -----------------------------------------------------------cceeec---------------
Confidence 011111
Q ss_pred CCCCCccceeccCCCCcc--eeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCc
Q 001628 393 PPSAPKEVMLKMPFLDSS--ITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGA 470 (1042)
Q Consensus 393 ~~~l~~~~~~~~~~h~~~--vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~ 470 (1042)
.|... |..+.+-+.|- .-+++|+.||.
T Consensus 1252 -------------~h~~~~~Iv~~slq~~G~--------------------------------------~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1252 -------------EHNDVEPIVHLSLQRQGL--------------------------------------GELVSGSQDGD 1280 (1387)
T ss_pred -------------ccCCcccceeEEeecCCC--------------------------------------cceeeeccCCe
Confidence 11111 22222211111 15899999999
Q ss_pred EEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccc---cceeeeccccc
Q 001628 471 INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE---NSFLSFTGSKK 547 (1042)
Q Consensus 471 IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~---~~~~~~~~~~~ 547 (1042)
|++||+..........+. .. ...++.+++|..+++...+|+|+. +.++||++.+...... ..|.
T Consensus 1281 I~~~DlR~~~~e~~~~iv----~~-~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~------- 1347 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIV----AH-WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFM------- 1347 (1387)
T ss_pred EEEEecccCcccccceee----ec-cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccc-------
Confidence 999999875222222221 00 112346999999999999999999 9999999987765331 0121
Q ss_pred CccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCe
Q 001628 548 GNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 595 (1042)
Q Consensus 548 g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~ 595 (1042)
.+. .+.+.||+|+|..-+||+|+.|..|.||....+.
T Consensus 1348 -~q~----------~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 -GQR----------IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -cCc----------CCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 122 3788999999999999999999999999876543
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-15 Score=159.92 Aligned_cols=207 Identities=13% Similarity=0.201 Sum_probs=156.1
Q ss_pred eeeecccCceEEEEEcCCCCEEEEE--EcCCeEEEEecCCC---eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 32 VFHYGFPSGCNKFAYDPLQKILAAA--TKDGRIKLYGRHNN---TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp~~~~LA~g--s~dg~I~iw~~~g~---~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
+.||--+..+..+.|..... |+++ +.|..|++|..+|. +..+-.... ..-.|+.......++++|+..+.|+|
T Consensus 28 ~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~~s~S~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 28 YVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVACASQSLYEISGGQSGCVKI 105 (673)
T ss_pred cccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhhhhcceeeeccCcCceeee
Confidence 45565566699999987764 4444 45577889988853 322222111 12222444444479999999999999
Q ss_pred EEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 107 WDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 107 Wd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
||++.+. ...+..|...|+++.+.-...|||+++..|.|.|..+.++.. ..++.+ .....|.-+.|
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---tt~f~~----------~sgqsvRll~y 172 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---TTTFTI----------DSGQSVRLLRY 172 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---ccceec----------CCCCeEEEeec
Confidence 9999776 677889999999999999999999999999999999988751 122222 11345668999
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+|. ...+|.+++.+|.|.+||+....+++.+ ...|..+...+||++.+...|++.+.|..|.+||+..
T Consensus 173 s~s-kr~lL~~asd~G~VtlwDv~g~sp~~~~-------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 173 SPS-KRFLLSIASDKGAVTLWDVQGMSPIFHA-------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred ccc-cceeeEeeccCCeEEEEeccCCCcccch-------hhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 995 5667888999999999999987765543 4779999999999855677899999999999999986
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-16 Score=182.41 Aligned_cols=200 Identities=14% Similarity=0.212 Sum_probs=143.6
Q ss_pred EEEEEcCCCC-EEEEEEcC----------CeEEEEecC-----CCeEEEEecCCCcceEEEEEecCCCE----EEEEeCC
Q 001628 42 NKFAYDPLQK-ILAAATKD----------GRIKLYGRH-----NNTQALLESSEAVSTKFLQFLENQGI----LLNVTST 101 (1042)
Q Consensus 42 ~~la~sp~~~-~LA~gs~d----------g~I~iw~~~-----g~~~~~~~~~~~~~v~~l~fs~~~~~----Lvs~s~d 101 (1042)
..+||+|.+. +||+|+.- .++-||..+ +.....-..........|+|.+.+.. |+.|.+|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 4589999997 78887543 444555443 11122223334456778999987655 8888999
Q ss_pred CCEEEEEcCCC----c---eeeeeecCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 102 NLIEVWDIDKK----R---LSHVHVCKEEITSFTIMQHSN-YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 102 g~I~vWd~~~~----~---~~~~~~h~~~It~v~~sp~~~-~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
|.|.+||...- . +.....|.+.|..+.|++... +|++|+.||.|.|||+...+ .++..+ .
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-----tP~~~~-------~ 157 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-----TPFTPG-------S 157 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-----CCCCCC-------C
Confidence 99999997652 2 667788999999999999875 99999999999999998854 233322 1
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCC-CEEEEEecCC
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIG-SKVAVGYSNG 252 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g-~~l~sg~~dG 252 (1042)
......|.+++|+-. ....|++++.+|.+.|||++..+.+-.+. .......+..+.|+ |+. ..+++++.|.
T Consensus 158 ~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls------~~~~~~~~S~l~Wh-P~~aTql~~As~dd 229 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLS------DTPGRMHCSVLAWH-PDHATQLLVASGDD 229 (1049)
T ss_pred CCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccc------cCCCccceeeeeeC-CCCceeeeeecCCC
Confidence 123568999999985 67788899999999999999877554431 12223567889999 654 5677776653
Q ss_pred ---eEEEEeCCC
Q 001628 253 ---EILIWGVPS 261 (1042)
Q Consensus 253 ---~I~iWd~~~ 261 (1042)
.|.+||++.
T Consensus 230 ~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 230 SAPVIQLWDLRF 241 (1049)
T ss_pred CCceeEeecccc
Confidence 578888775
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=6.7e-15 Score=147.95 Aligned_cols=219 Identities=13% Similarity=0.137 Sum_probs=163.0
Q ss_pred CCcCceeeeeecccCceEEEEEcC-----CCCEEEEEEcCCeEEEEecCCCe-EEEEe----cCCCcceEEEEEecC---
Q 001628 25 SDVDPRLVFHYGFPSGCNKFAYDP-----LQKILAAATKDGRIKLYGRHNNT-QALLE----SSEAVSTKFLQFLEN--- 91 (1042)
Q Consensus 25 ~~~~~~~~~~~G~~~~v~~la~sp-----~~~~LA~gs~dg~I~iw~~~g~~-~~~~~----~~~~~~v~~l~fs~~--- 91 (1042)
..|......+-+++..|..++|.+ .-+.+|+++. .++.+|...|.. ...++ ..+......++|+-+
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 456666666678888999999985 2345666654 678898877422 22222 223344444777653
Q ss_pred -CCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeeccccc
Q 001628 92 -QGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSA 168 (1042)
Q Consensus 92 -~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~ 168 (1042)
..+||+++.-|.|+|.|+.+++ ...+.+|...|..+.+.|+. +++++++.|.+|++|++++..+-.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf--------- 174 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF--------- 174 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe---------
Confidence 4589999999999999999998 67889999999999999988 78999999999999999998642111
Q ss_pred ccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee----EEE--eCCc--------------cccccccc
Q 001628 169 SHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS----IFS--MGGN--------------VLQSVYHE 228 (1042)
Q Consensus 169 ~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~----~~~--~~g~--------------~~~~~~~~ 228 (1042)
|-..+|...|.++.|++ ++.++++++.|.++++|++...+. ... +..+ ...+...|
T Consensus 175 --GG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 175 --GGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred --cccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 11345788999999999 899999999999999999985331 111 1000 01133567
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
...|.|+.|. |+++++-+-++.|..|..-
T Consensus 251 rnyVDCvrw~---gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 251 RNYVDCVRWF---GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cchHHHHHHH---hhheeecccCceEEEEecc
Confidence 8888899887 8999999999999999873
No 168
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=5.9e-17 Score=178.06 Aligned_cols=199 Identities=15% Similarity=0.266 Sum_probs=171.0
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEe-cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-e
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLE-SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-L 114 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~ 114 (1042)
|...+.|+..-...+.+++|+.|..+-+|... +....+. ..+..+|.+|.|++....|++|+.+|+|++||++..+ +
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~-kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG-KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeecccccc-CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 44567777777788999999999999999987 5544433 2334899999999999999999999999999999887 8
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
.++.+|...++.+.|+|.+.|.+.|+.|+.+.+||.....+. +. ..+|...|..+.|+| +|.++
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-----~~---------~~s~~~vv~~l~lsP--~Gr~v 169 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-----HT---------YKSHTRVVDVLRLSP--DGRWV 169 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccCce-----ee---------ecCCcceeEEEeecC--CCcee
Confidence 899999999999999999999999999999999999865431 11 123567899999999 99999
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+.+++|..++|||+..|+.... +..|...+.++.|+ |..-.+++|+.|+++++||+++
T Consensus 170 ~~g~ed~tvki~d~~agk~~~e--------f~~~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTAGKLSKE--------FKSHEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eccCCcceeeeecccccccccc--------cccccccccccccC-chhhhhccCCCCceeeeeccce
Confidence 9999999999999998665444 57899999999998 9999999999999999999986
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.5e-15 Score=149.01 Aligned_cols=193 Identities=13% Similarity=0.243 Sum_probs=147.2
Q ss_pred CEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEec--CCCEEEEEeCCCCEEEEEcCCCc---eeeeeecC-CC
Q 001628 51 KILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLE--NQGILLNVTSTNLIEVWDIDKKR---LSHVHVCK-EE 123 (1042)
Q Consensus 51 ~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~--~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~-~~ 123 (1042)
..+|++-++|.|++||.. |+....|..+. ..+..+.|.. ....+.+++.||+|++||++... ......++ .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 689999999999999987 34566676665 4566788876 34468999999999999998865 33334444 56
Q ss_pred eEEEEEeCCCCEEEEEeC----CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC
Q 001628 124 ITSFTIMQHSNYMLLGDT----AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 124 It~v~~sp~~~~l~sg~~----dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~ 199 (1042)
..|++..-.++.+++|++ +-.|.+||+...+..+.. + .-.|...|+++.|+|. +.+.|++|+.
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~----------~--~eSH~DDVT~lrFHP~-~pnlLlSGSv 186 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ----------L--NESHNDDVTQLRFHPS-DPNLLLSGSV 186 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh----------h--hhhccCcceeEEecCC-CCCeEEeecc
Confidence 788888778899999875 678999999887521100 0 3457889999999997 9999999999
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
||.|.|+|+....- -..+.....+...|.++.|+.+.=..|.+-+..++..+|++..+
T Consensus 187 DGLvnlfD~~~d~E-----eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNE-----EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred cceEEeeecCCCcc-----hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99999999986421 01122234567889999999433357899999999999999985
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-14 Score=151.69 Aligned_cols=292 Identities=12% Similarity=0.189 Sum_probs=199.2
Q ss_pred EEEcCCeEEEEecCC--CeEEEEecCCCcceEEEEEecCCCEEEEEe--CCCCEEEEEcCCCc--eeeee-ecCCCeEEE
Q 001628 55 AATKDGRIKLYGRHN--NTQALLESSEAVSTKFLQFLENQGILLNVT--STNLIEVWDIDKKR--LSHVH-VCKEEITSF 127 (1042)
Q Consensus 55 ~gs~dg~I~iw~~~g--~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s--~dg~I~vWd~~~~~--~~~~~-~h~~~It~v 127 (1042)
+++..-.++|||... .............+..+.|.... +|++++ .|..|++|.-..+. +..+. .....-+|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccc-eEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 334445699999761 11222222223447778888776 366655 56678999765542 22222 122355677
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEe
Q 001628 128 TIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWD 207 (1042)
Q Consensus 128 ~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd 207 (1042)
+......|+++|+..|.|+|||+....+ + .....|...|+++.++- ...+|++++..|-|.|..
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~------h--------r~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLI------H--------RFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHG 149 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHH------h--------hhccCCcceeEEEEecC--CcceeEEeccCCcEEEEe
Confidence 7767779999999999999999996542 1 11355778999999998 788999999999999999
Q ss_pred ccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCC
Q 001628 208 IRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLD 287 (1042)
Q Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~ 287 (1042)
+.++.....++ ......|.-+.|+.....+|.+++.+|.|.+||+...+ |+
T Consensus 150 ~~t~~~tt~f~-------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s------------p~---------- 200 (673)
T KOG4378|consen 150 TKTKQKTTTFT-------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS------------PI---------- 200 (673)
T ss_pred cccCcccccee-------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC------------cc----------
Confidence 99876443321 12234555788883345567889999999999998731 11
Q ss_pred CccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEE
Q 001628 288 KIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLL 367 (1042)
Q Consensus 288 ~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl 367 (1042)
.
T Consensus 201 ----~--------------------------------------------------------------------------- 201 (673)
T KOG4378|consen 201 ----F--------------------------------------------------------------------------- 201 (673)
T ss_pred ----c---------------------------------------------------------------------------
Confidence 0
Q ss_pred ecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcC
Q 001628 368 GKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETK 447 (1042)
Q Consensus 368 ~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 447 (1042)
-|+ ..|..+...++|+|...
T Consensus 202 -------~~~---------------------------~~HsAP~~gicfspsne-------------------------- 221 (673)
T KOG4378|consen 202 -------HAS---------------------------EAHSAPCRGICFSPSNE-------------------------- 221 (673)
T ss_pred -------chh---------------------------hhccCCcCcceecCCcc--------------------------
Confidence 011 13333333444443322
Q ss_pred CCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEE
Q 001628 448 LKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFK 527 (1042)
Q Consensus 448 ~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~ 527 (1042)
.+|++.+.|..|.+||.........+ ....+.++++|.++|.+|+.|+..|.|..||
T Consensus 222 ------------~l~vsVG~Dkki~~yD~~s~~s~~~l-----------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 222 ------------ALLVSVGYDKKINIYDIRSQASTDRL-----------TYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ------------ceEEEecccceEEEeeccccccccee-----------eecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 37889999999999999865433211 2236899999999999999999999999999
Q ss_pred eccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC
Q 001628 528 LKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS 574 (1042)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg 574 (1042)
+... +.+. .+...|+..|++++|-|.-
T Consensus 279 ~R~~-----------------k~Pv---~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 279 MRST-----------------KAPV---AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccC-----------------CCCc---eEeeecccceeEEEeeecc
Confidence 8653 2333 6777888999999998754
No 171
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3e-14 Score=165.56 Aligned_cols=182 Identities=16% Similarity=0.249 Sum_probs=128.9
Q ss_pred EecCCCeEEEEecCCCcceEEEEEecCC-CEEEEEeCCCCEEEEEcCCCc--------eeeeeecCCCeEEEEEeCCCCE
Q 001628 65 YGRHNNTQALLESSEAVSTKFLQFLENQ-GILLNVTSTNLIEVWDIDKKR--------LSHVHVCKEEITSFTIMQHSNY 135 (1042)
Q Consensus 65 w~~~g~~~~~~~~~~~~~v~~l~fs~~~-~~Lvs~s~dg~I~vWd~~~~~--------~~~~~~h~~~It~v~~sp~~~~ 135 (1042)
|+..|.....+..|....+ .++.++.. .++++|+.||+|++||+..-. ..+...-.+++.++.+.+.++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~-k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVI-KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhcccccc-ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 7777656555555554444 57766654 899999999999999976421 1222234578999999999999
Q ss_pred EEEEeCCCcEEEEEccCCc-cceeeeeeecccccccCccccCCCCEEEE-EEccCCCCC-eEEEEECCCeEEEEeccCCe
Q 001628 136 MLLGDTAGKISVLKLDQES-SQIVKMKYIIPLSASHGNEVSGDPAVINI-LPQPTAESK-RILIIFRDGLISLWDIRESK 212 (1042)
Q Consensus 136 l~sg~~dG~I~vwd~~~~~-~~~~~~~~~ip~~~~~~~~~~~~~~V~~v-~~~p~~d~~-~lls~~~dg~I~vWd~~~~~ 212 (1042)
+|+|+.||.|++.+++.-. .+.......+|.... .+.|+++ +|.-. ... .|+.+...+.|..||.....
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~-------~g~vv~m~a~~~~-~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK-------DGVVVSMHAFTAI-VQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccC-------CCceEEeeccccc-ccceeEEEEEeccceEEecchhhh
Confidence 9999999999999998732 112222233333333 3445554 34432 344 78888899999999998755
Q ss_pred eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 213 SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 213 ~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
...+. ......+.|+++|.+ |.+.+++.|...|.+.+||++-.
T Consensus 1185 ~~w~l------k~~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1185 DAWRL------KNQLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hHHhh------hcCccccceeEEEec-CCceEEEEecCCceEEEEEeecC
Confidence 33221 123456789999998 99999999999999999999853
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=5.8e-15 Score=144.03 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=134.5
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL 114 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~ 114 (1042)
+|-+.|+++.|..+++ |..|+..|.|++|...+ +....++..+...|+.+.-.|++ .|.+-+.|..+.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcce
Confidence 8888999999998887 78899999999999885 34556666777899999999985 789999999999999988664
Q ss_pred eeeeecCCCeEEEEEeCCC---------CEEEEEeCCC-cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 115 SHVHVCKEEITSFTIMQHS---------NYMLLGDTAG-KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~---------~~l~sg~~dG-~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
..... -.+.++.|.+.. ..++.-++.. .+.+-|.... ....++... .....+.|.+..
T Consensus 90 i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~------tqv~i~dd~----~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 90 ISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT------TQVQIADDS----ERSKLGSVMCQD 157 (323)
T ss_pred EEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCcc------ceeEccCch----hccccCceeeee
Confidence 33332 233444444321 1111111110 0111111111 111222111 223357888887
Q ss_pred EccCCCCC--eEEEEECCCeEEEEeccCCeeEEEeC--CcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 185 PQPTAESK--RILIIFRDGLISLWDIRESKSIFSMG--GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 185 ~~p~~d~~--~lls~~~dg~I~vWd~~~~~~~~~~~--g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
+.-. ++. .++.|+++|.+.+||+.++..+..+. .+.......|..+|.++.|. +.-+.=++|+.+-.+..|++.
T Consensus 158 ~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 158 KDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred cccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeec
Confidence 5442 443 46788999999999999975443321 12233346788999999887 555555677777777788776
Q ss_pred C
Q 001628 261 S 261 (1042)
Q Consensus 261 ~ 261 (1042)
.
T Consensus 236 ~ 236 (323)
T KOG0322|consen 236 H 236 (323)
T ss_pred c
Confidence 4
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=4.7e-14 Score=160.56 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=192.0
Q ss_pred CCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCC
Q 001628 102 NLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 102 g~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
+.+.||++.... .......+..|+|+.|+|.. .+|+.|+.+|.|.+||+......+ +..+ ..+...|..+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~l-----s~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGL-----SALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---Cccc-----ccccccCCcC
Confidence 379999999884 67777788999999999987 677888899999999998876311 0001 1114567899
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccc------cccCCceeEEEEEccCCCEEEEEecCCe
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSV------YHETKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~------~~~~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
|+.+.|.....+..+++++.||.|..|+++.-..-.. +..+... ......++++.|...+...|++|+.+|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e--~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE--GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchh--hcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 9999998743445699999999999998765221000 1111111 2335678899998667788999999999
Q ss_pred EEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeeccccccee
Q 001628 254 ILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRT 333 (1042)
Q Consensus 254 I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~ 333 (1042)
|.--+-....... ..
T Consensus 372 v~~~~r~g~~~~~-------------------------------------~~---------------------------- 386 (555)
T KOG1587|consen 372 VYKGCRKGYTPAP-------------------------------------EV---------------------------- 386 (555)
T ss_pred EEEEeccCCcccc-------------------------------------cc----------------------------
Confidence 8774443310000 00
Q ss_pred EEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeE
Q 001628 334 TKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITA 413 (1042)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~ 413 (1042)
+|. .......|..+|++
T Consensus 387 -----------------------------------------~~~----------------------~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 387 -----------------------------------------SYK----------------------GHSTFITHIGPVYA 403 (555)
T ss_pred -----------------------------------------ccc----------------------ccccccccCcceEe
Confidence 000 00011245556666
Q ss_pred EEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccc
Q 001628 414 MKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEK 493 (1042)
Q Consensus 414 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~ 493 (1042)
+.++|=.. .++.+++ |.+||||.... ...+++.+
T Consensus 404 v~~nPF~~--------------------------------------k~fls~g-DW~vriWs~~~-~~~Pl~~~------ 437 (555)
T KOG1587|consen 404 VSRNPFYP--------------------------------------KNFLSVG-DWTVRIWSEDV-IASPLLSL------ 437 (555)
T ss_pred eecCCCcc--------------------------------------ceeeeec-cceeEeccccC-CCCcchhh------
Confidence 65332222 1344444 99999999773 22344433
Q ss_pred cCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEec
Q 001628 494 DFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR 572 (1042)
Q Consensus 494 ~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp 572 (1042)
..+...|++++|||.. ..||++..||.+.+||+....... . ..........+.+.|++
T Consensus 438 --~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P----------------v---~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 438 --DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP----------------V---LSQKVCSPALTRVRWSP 496 (555)
T ss_pred --hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC----------------c---ccccccccccceeecCC
Confidence 3445669999999987 677888899999999997654422 0 11111236678889999
Q ss_pred CCcEEEEEecCCcEEEEeccC
Q 001628 573 NSQHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 573 dg~~La~gs~dg~V~vwD~~~ 593 (1042)
+|++||+|+..|++.+|++..
T Consensus 497 ~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999963
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.7e-14 Score=145.97 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=165.6
Q ss_pred CCCcCceeeee-------ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-------CCeEEEEecCCCcceEEEEEe
Q 001628 24 SSDVDPRLVFH-------YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-------NNTQALLESSEAVSTKFLQFL 89 (1042)
Q Consensus 24 ~~~~~~~~~~~-------~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-------g~~~~~~~~~~~~~v~~l~fs 89 (1042)
.++|.++...+ .||.+.|.++.|+..+++||+|+.|-.+++|+++ .+.+.+..+|+...|-+|+|.
T Consensus 35 ~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 35 VKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc
Confidence 34565554332 4888999999999999999999999999999986 144556667777889999999
Q ss_pred cCCCEEEEEeCCCCEEEEEcCCCceeeeeecCC---CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeeccc
Q 001628 90 ENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKE---EITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPL 166 (1042)
Q Consensus 90 ~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~---~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~ 166 (1042)
-...+|.+|..+++|..-|+++++...+..|.. .|..+..+|..+.+++.+.+|.|.+||....+... .+ ..|.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~--~~-~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI--SL-VLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC--ce-eeec
Confidence 999999999999999999999999776766664 89999999999999999999999999998765111 11 1111
Q ss_pred ccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe-eEEEeCCcccccccccCCceeEEEEEccCCCEE
Q 001628 167 SASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESK-SIFSMGGNVLQSVYHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 167 ~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~-~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l 245 (1042)
. .......+.|+|. .+..|++....+-+-+||++... .++.+++.. .+......-.++.|+ |+|..|
T Consensus 192 N--------~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~--~L~~~~~~~M~~~~~-~~G~Q~ 259 (609)
T KOG4227|consen 192 N--------SGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFK--GLPQENTEWMGSLWS-PSGNQF 259 (609)
T ss_pred C--------CCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccc--cCcccchhhhheeeC-CCCCee
Confidence 1 1236778899996 77888999999999999998643 333332221 112223344567787 888887
Q ss_pred EEEecCCeEEEEeCCC
Q 001628 246 AVGYSNGEILIWGVPS 261 (1042)
Q Consensus 246 ~sg~~dG~I~iWd~~~ 261 (1042)
++.-.-..-.+||+.+
T Consensus 260 msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFIS 275 (609)
T ss_pred hhhhccCCCEEeeeec
Confidence 7655544444555543
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.3e-15 Score=174.94 Aligned_cols=211 Identities=20% Similarity=0.294 Sum_probs=160.7
Q ss_pred eeeeeecccCceEEEEEcCCCCE----EEEEEcCCeEEEEecCCCe--------EEEEecCCCcceEEEEEecCCC-EEE
Q 001628 30 RLVFHYGFPSGCNKFAYDPLQKI----LAAATKDGRIKLYGRHNNT--------QALLESSEAVSTKFLQFLENQG-ILL 96 (1042)
Q Consensus 30 ~~~~~~G~~~~v~~la~sp~~~~----LA~gs~dg~I~iw~~~g~~--------~~~~~~~~~~~v~~l~fs~~~~-~Lv 96 (1042)
..+..+-...+-..|+|.+.+.. ||.|..||.|.+|+.. .. .... ..|..+|..|.|++.++ .|+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecch-hhccCcchHHHhhh-cccCCceeeeeccccCCceee
Confidence 33444444556778999988765 9999999999999976 32 1122 33458899999999776 999
Q ss_pred EEeCCCCEEEEEcCCCc-eeee--eecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCc
Q 001628 97 NVTSTNLIEVWDIDKKR-LSHV--HVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGN 172 (1042)
Q Consensus 97 s~s~dg~I~vWd~~~~~-~~~~--~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~ 172 (1042)
+|++||.|.|||+..-+ ..+. ....+.|.|++|+..- ..|++|+.+|.+.|||++..+. ++.+.+
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~---------- 202 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSD---------- 202 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-cccccc----------
Confidence 99999999999998855 2222 3356889999998766 6788999999999999998752 211211
Q ss_pred cccCCCCEEEEEEccCCCCCeEEEEECCC---eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEe
Q 001628 173 EVSGDPAVINILPQPTAESKRILIIFRDG---LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGY 249 (1042)
Q Consensus 173 ~~~~~~~V~~v~~~p~~d~~~lls~~~dg---~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~ 249 (1042)
......+..+.|||. +...|++++.|. .|.+||++.-. ..++.+.+|...|.++.|...|..++++++
T Consensus 203 -~~~~~~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~as-------sP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 203 -TPGRMHCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFAS-------SPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred -CCCccceeeeeeCCC-CceeeeeecCCCCCceeEeecccccC-------CchhhhcccccceeeeccCCCCchhhhccc
Confidence 112246889999995 677888888654 68999988633 334556899999999999755569999999
Q ss_pred cCCeEEEEeCCCc
Q 001628 250 SNGEILIWGVPSI 262 (1042)
Q Consensus 250 ~dG~I~iWd~~~~ 262 (1042)
.|+.|.+|+..++
T Consensus 274 kD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 274 KDNRIICWNPNTG 286 (1049)
T ss_pred CCCCeeEecCCCc
Confidence 9999999999985
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=142.04 Aligned_cols=154 Identities=17% Similarity=0.259 Sum_probs=116.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccc--ccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccc
Q 001628 461 LFITGHSDGAINFWDVSCPLFLLILSLKQQ--SEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 538 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~--~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~ 538 (1042)
++++|.++|.|.+||++.+.. +..+++. .+-....|..+|.++.|.+....=++|+.+-.+.+|.++......
T Consensus 167 lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl--- 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL--- 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc---
Confidence 788999999999999998622 2233211 122335788999999999877777888888899999987543211
Q ss_pred eeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEee
Q 001628 539 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETC 618 (1042)
Q Consensus 539 ~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~ 618 (1042)
++. ......+-.|..+.+-||++.+|+++.||.|+||..++...+ .....|+..|.+++|+|
T Consensus 242 -----------q~~---~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyHsagvn~vAfsp- 303 (323)
T KOG0322|consen 242 -----------QIR---KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYHSAGVNAVAFSP- 303 (323)
T ss_pred -----------ccc---ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhhhcceeEEEeCC-
Confidence 000 111122355888899999999999999999999999987765 11223566999999999
Q ss_pred ecCCCCceEEEEEeCCceEEEEEC
Q 001628 619 SLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 619 ~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
+..+++.++.|++|.+|++
T Consensus 304 -----d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 -----DCELMAAASKDARISLWKL 322 (323)
T ss_pred -----CCchhhhccCCceEEeeec
Confidence 8899999999999999985
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.8e-14 Score=161.12 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=149.1
Q ss_pred eeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEe--cCCCcceEEEEEecC--CCEEEEEeCCCCEEE
Q 001628 32 VFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLE--SSEAVSTKFLQFLEN--QGILLNVTSTNLIEV 106 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~--~~~~~~v~~l~fs~~--~~~Lvs~s~dg~I~v 106 (1042)
.+..|-+.....+.|+|-...|+++...-+|+|||.+ |+...-|. ......|+.|++..+ ...|++++.||.|+|
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3455667778889999999999999988899999987 23333333 223457899999874 458999999999999
Q ss_pred EEc-CCC--c---eeeeeecC-------CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 107 WDI-DKK--R---LSHVHVCK-------EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 107 Wd~-~~~--~---~~~~~~h~-------~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
|+- ..+ + +....+.. +.=.-++|.....+|+++++-..|+|||.+.... ...+|+ .
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~-~~diP~----~------ 1206 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV-VADIPY----G------ 1206 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee-Eeeccc----C------
Confidence 973 222 2 22112111 1113456778778888888889999999998763 222332 1
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCc--eeEEEEEccCCC-EEEEEec
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQ--VTSACWACPIGS-KVAVGYS 250 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~--I~~l~~~~~~g~-~l~sg~~ 250 (1042)
....|+++.-+-. .|+.++.|+.||.|++||.+....- .....+..|... |..+.+. +.|- .|++|+.
T Consensus 1207 --s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~d-----s~v~~~R~h~~~~~Iv~~slq-~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1207 --SSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPD-----SLVCVYREHNDVEPIVHLSLQ-RQGLGELVSGSQ 1277 (1387)
T ss_pred --CCccceeeccccc-CCceEEEeecCCceEEeecccCCcc-----ccceeecccCCcccceeEEee-cCCCcceeeecc
Confidence 2457788876653 6899999999999999999864321 112334566655 9999887 6555 4999999
Q ss_pred CCeEEEEeCCC
Q 001628 251 NGEILIWGVPS 261 (1042)
Q Consensus 251 dG~I~iWd~~~ 261 (1042)
||.|.+||++.
T Consensus 1278 ~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1278 DGDIQLLDLRM 1288 (1387)
T ss_pred CCeEEEEeccc
Confidence 99999999986
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.8e-15 Score=158.31 Aligned_cols=126 Identities=16% Similarity=0.250 Sum_probs=102.2
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCC---------ceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKK---------RLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~---------~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~ 151 (1042)
..++++.|.|....|++++.||+|.+|+++.. .+.++.+|.++|.|+++.+.+..+++|+.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 56888999999999999999999999999321 167889999999999999999999999999999999887
Q ss_pred CCccceeeeeeeccc-ccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee
Q 001628 152 QESSQIVKMKYIIPL-SASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS 213 (1042)
Q Consensus 152 ~~~~~~~~~~~~ip~-~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~ 213 (1042)
... -+|-... ....+...+|...|..+++++ ...+|++++.||++++|+......
T Consensus 375 ~n~-----dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 375 PNQ-----DPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CCC-----CcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc
Confidence 432 1111100 011223567889999999999 788899999999999999987554
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=9.1e-14 Score=158.26 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=131.7
Q ss_pred CeEEEEecCCCeEEEEecCCCcceEEEEEecC-CCEEEEEeCCCCEEEEEcCCCce-------eeeeecCCCeEEEEEeC
Q 001628 60 GRIKLYGRHNNTQALLESSEAVSTKFLQFLEN-QGILLNVTSTNLIEVWDIDKKRL-------SHVHVCKEEITSFTIMQ 131 (1042)
Q Consensus 60 g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~-~~~Lvs~s~dg~I~vWd~~~~~~-------~~~~~h~~~It~v~~sp 131 (1042)
+.+.||+........+.......|+++.|+|. ..+|+.|+.+|+|.+||+..+.. .....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899998732233333444568889999995 45677778899999999987652 23346889999999976
Q ss_pred CCC--EEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEecc
Q 001628 132 HSN--YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIR 209 (1042)
Q Consensus 132 ~~~--~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~ 209 (1042)
+.. -+++++.||.|..|+++........+....... .+........++++.|.|. +.+++++|+.+|.|.-=+..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~--~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH--KGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccc--cccccccccceeeEeeccC-CCceEEEEcCCcEEEEEecc
Confidence 554 489999999999998766432111111000000 0112233468999999996 89999999999999663333
Q ss_pred CCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 210 ESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 210 ~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
..+.....-.+.......|.++|.++.++ |-+..+...+.|-++++|.-.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred CCcccccccccccccccccCcceEeeecC-CCccceeeeeccceeEecccc
Confidence 32211100012233456788999999998 777666555559999999876
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=6e-12 Score=145.88 Aligned_cols=335 Identities=23% Similarity=0.392 Sum_probs=230.4
Q ss_pred CCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--eeeeeecCC-CeEEEEE-eCCCC-EEEEEeC-CCcEEEEEcc
Q 001628 78 SEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LSHVHVCKE-EITSFTI-MQHSN-YMLLGDT-AGKISVLKLD 151 (1042)
Q Consensus 78 ~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~~~~~h~~-~It~v~~-sp~~~-~l~sg~~-dG~I~vwd~~ 151 (1042)
.+...+..+.|.+.+..++.++.|+.+.+|+...+. ...+..+.. .+..+.+ .+++. +++..+. |+.+.+|++.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 444778889999999999999999999999999884 555555443 7777777 77777 5555444 9999999998
Q ss_pred C-CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CCeEEEEeccCCeeEEEeCCcccccccccC
Q 001628 152 Q-ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DGLISLWDIRESKSIFSMGGNVLQSVYHET 229 (1042)
Q Consensus 152 ~-~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~ 229 (1042)
. ... . .. ...|...|..+.|+| ++..++++.. |+.+++|++..+..+.. ...|.
T Consensus 143 ~~~~~-~-~~------------~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 198 (466)
T COG2319 143 TPGKL-I-RT------------LEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--------LAGHT 198 (466)
T ss_pred CCCeE-E-EE------------EecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--------eccCC
Confidence 7 221 1 11 123567888999999 7878888875 99999999998555444 35589
Q ss_pred CceeEEEEEccCCC-EEEEEecCCeEEEEeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEE
Q 001628 230 KQVTSACWACPIGS-KVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYI 308 (1042)
Q Consensus 230 ~~I~~l~~~~~~g~-~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~ 308 (1042)
..|.++.|+ |++. .+++++.|+.|.+||...+.....
T Consensus 199 ~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----------------------------------------- 236 (466)
T COG2319 199 DPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRS----------------------------------------- 236 (466)
T ss_pred CceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEee-----------------------------------------
Confidence 999999998 8998 555559999999997653200000
Q ss_pred ecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccC
Q 001628 309 MGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQY 388 (1042)
Q Consensus 309 ~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~ 388 (1042)
.
T Consensus 237 ------------------------------------------------------------------~------------- 237 (466)
T COG2319 237 ------------------------------------------------------------------T------------- 237 (466)
T ss_pred ------------------------------------------------------------------e-------------
Confidence 0
Q ss_pred CCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCC
Q 001628 389 QSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSD 468 (1042)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~D 468 (1042)
...|.... ... +.+++.++++++.|
T Consensus 238 ---------------~~~~~~~~-~~~---------------------------------------~~~~~~~~~~~~~d 262 (466)
T COG2319 238 ---------------LSGHSDSV-VSS---------------------------------------FSPDGSLLASGSSD 262 (466)
T ss_pred ---------------cCCCCcce-eEe---------------------------------------ECCCCCEEEEecCC
Confidence 00111110 001 33344578899999
Q ss_pred CcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccC
Q 001628 469 GAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKG 548 (1042)
Q Consensus 469 g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g 548 (1042)
+.+++|+...... .+..+ ..|...|.++.|.|++..+++++.|+.+.+|+......... .
T Consensus 263 ~~~~~~~~~~~~~-~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~--------- 322 (466)
T COG2319 263 GTIRLWDLRSSSS-LLRTL--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS--L--------- 322 (466)
T ss_pred CcEEEeeecCCCc-EEEEE--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE--e---------
Confidence 9999999986543 11111 35678999999999888888899999999997665433220 0
Q ss_pred ccceeeeEEEeecCCCeEEEEEecCCcEEEEE-ecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceE
Q 001628 549 NSHIIHSVKVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNF 627 (1042)
Q Consensus 549 ~~~~~~~~~~~~~~~~V~~l~~spdg~~La~g-s~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~ 627 (1042)
. ...|...|..+.|++++..++++ ..|+.+.+|++............ ..+..+.|.+ + ..
T Consensus 323 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~-~~ 383 (466)
T COG2319 323 T--------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH----SNVLSVSFSP------D-GR 383 (466)
T ss_pred e--------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC----ceEEEEEECC------C-CC
Confidence 0 12233579999994333566666 68899999999877622222211 1278888875 3 33
Q ss_pred EE-EEeCCceEEEEECCCCceeeee
Q 001628 628 LV-IATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 628 L~-s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
.. .+..++.+.+|+..........
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EEEEecCCCceEEEecccCeeeeec
Confidence 33 3788999999998866655443
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=2.9e-12 Score=136.57 Aligned_cols=271 Identities=15% Similarity=0.280 Sum_probs=174.9
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee-ecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY-IIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~-~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
.|...|.|+.|+.....+++++++-.+.-|++.+.......+|- .+|..- | +-...--.......+++.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~-------h---~~~rs~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDM-------H---LGGRSSGGGKGSDTLLIC 81 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccc-------c---ccccccCCCCCcceEEEE
Confidence 45666789999888888888777766666777665432222221 111100 0 000000000034568888
Q ss_pred ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCccccccccCCcccccc
Q 001628 198 FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPI 277 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~ 277 (1042)
++||.+.+.+-. +..-.....|.+.+.+-.|+ |+|.-|++++.||.|++|.-... ++....
T Consensus 82 s~DGkf~il~k~---------~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGM--LRStl~------- 142 (737)
T KOG1524|consen 82 SNDGRFVILNKS---------ARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGM--LRSTVV------- 142 (737)
T ss_pred cCCceEEEeccc---------chhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEeccch--HHHHHh-------
Confidence 899998777544 23344557899999999998 99999999999999999997752 222111
Q ss_pred ccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCC
Q 001628 278 CKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPN 357 (1042)
Q Consensus 278 ~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 357 (1042)
+. ..+|+++.|.+ .....+|+.|
T Consensus 143 ---Q~-----~~~v~c~~W~p--~S~~vl~c~g----------------------------------------------- 165 (737)
T KOG1524|consen 143 ---QN-----EESIRCARWAP--NSNSIVFCQG----------------------------------------------- 165 (737)
T ss_pred ---hc-----CceeEEEEECC--CCCceEEecC-----------------------------------------------
Confidence 11 16788888874 2222333322
Q ss_pred CCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhhhhc
Q 001628 358 KPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS 437 (1042)
Q Consensus 358 ~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~~~~ 437 (1042)
|++.+=.+ -++........|++-|.++.++
T Consensus 166 -------------~h~~IKpL-----------------~~n~k~i~WkAHDGiiL~~~W~-------------------- 195 (737)
T KOG1524|consen 166 -------------GHISIKPL-----------------AANSKIIRWRAHDGLVLSLSWS-------------------- 195 (737)
T ss_pred -------------CeEEEeec-----------------ccccceeEEeccCcEEEEeecC--------------------
Confidence 23322110 0223334455788888888844
Q ss_pred CCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEE
Q 001628 438 VPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSG 517 (1042)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg 517 (1042)
+..+++++|++|-..++||..+..+ |.- ..|..+|++++|.|+ ..++.+
T Consensus 196 -------------------~~s~lI~sgGED~kfKvWD~~G~~L---f~S--------~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 196 -------------------TQSNIIASGGEDFRFKIWDAQGANL---FTS--------AAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred -------------------ccccceeecCCceeEEeecccCccc---ccC--------Chhccceeeeeeccc-cceeee
Confidence 4455999999999999999987643 311 578899999999999 566655
Q ss_pred eccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEE
Q 001628 518 DQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLL 589 (1042)
Q Consensus 518 ~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vw 589 (1042)
+.. +.| . . .... |.|..++||+||..+++|...|.|.+=
T Consensus 245 S~n-t~R--------~------~--------~p~~----------GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 245 SYN-TAR--------F------S--------SPRV----------GSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eee-eee--------e------c--------CCCc----------cceEEEEEcCCCceeeccccCceEEEe
Confidence 432 222 1 1 2223 889999999999999999999987654
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.58 E-value=8.9e-14 Score=137.57 Aligned_cols=215 Identities=14% Similarity=0.258 Sum_probs=165.0
Q ss_pred cCceeeeeecccCceEEEEEcCCC-----CEEEEEEcCCeEEEEecC---CCe--EEEEe----cCCCcceEEEEEec-C
Q 001628 27 VDPRLVFHYGFPSGCNKFAYDPLQ-----KILAAATKDGRIKLYGRH---NNT--QALLE----SSEAVSTKFLQFLE-N 91 (1042)
Q Consensus 27 ~~~~~~~~~G~~~~v~~la~sp~~-----~~LA~gs~dg~I~iw~~~---g~~--~~~~~----~~~~~~v~~l~fs~-~ 91 (1042)
..+.....+.||..++.+-|.|+. .+||+.+ -.+|+|... +++ +..+. .+..+++++..|.. +
T Consensus 85 ~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 85 GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC
Confidence 334444557899999999999988 3677654 369999875 112 22222 34467999999987 5
Q ss_pred CCEEEEEeCCCCEEEEEcCCCc----eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeeccc
Q 001628 92 QGILLNVTSTNLIEVWDIDKKR----LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPL 166 (1042)
Q Consensus 92 ~~~Lvs~s~dg~I~vWd~~~~~----~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~ 166 (1042)
-+++.+.+-|-+..|||++++. ...+..|..+|..++|..++ +.+++.+.||.|+++|+....- ....|.-|
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p- 239 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDP- 239 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCC-
Confidence 5688899999999999999973 45677899999999999876 6788999999999999988652 12222221
Q ss_pred ccccCccccCCCCEEEEEEccCCCCCeEEEEECC-CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEE
Q 001628 167 SASHGNEVSGDPAVINILPQPTAESKRILIIFRD-GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 167 ~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d-g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l 245 (1042)
....+...++|++. |.+++++-..| ..|.+.|++... .....+.+|...|..++|.+....+|
T Consensus 240 --------~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~-------tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 240 --------SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPC-------TPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred --------CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCC-------cceehhhcCcccccceEecCCCCcee
Confidence 12468889999996 89999887755 468899998643 23345689999999999995568899
Q ss_pred EEEecCCeEEEEeCCCc
Q 001628 246 AVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 246 ~sg~~dG~I~iWd~~~~ 262 (1042)
++++.|....+||+...
T Consensus 304 ctaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQM 320 (364)
T ss_pred eecCCcceEEEEecccc
Confidence 99999999999999874
No 183
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=9.5e-12 Score=138.27 Aligned_cols=453 Identities=17% Similarity=0.166 Sum_probs=250.5
Q ss_pred CCCCCCCCCcCceeeeeec---------------------ccCceEEEEEcCC------------CCEEEEEEcCCeEEE
Q 001628 18 SSDGLKSSDVDPRLVFHYG---------------------FPSGCNKFAYDPL------------QKILAAATKDGRIKL 64 (1042)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~G---------------------~~~~v~~la~sp~------------~~~LA~gs~dg~I~i 64 (1042)
.+.+..+.|+.+.-+..|| |+..|+.+.|.|. +-+||++...|+|.+
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3555666777777666665 4566888888773 347889999999999
Q ss_pred EecCC-CeEEEEecCCCcceEEEEEecCC----CEEEEEeCCCCEEEEEcCCCceeeeeec-CCCeEEEEEeCCC-CEEE
Q 001628 65 YGRHN-NTQALLESSEAVSTKFLQFLENQ----GILLNVTSTNLIEVWDIDKKRLSHVHVC-KEEITSFTIMQHS-NYML 137 (1042)
Q Consensus 65 w~~~g-~~~~~~~~~~~~~v~~l~fs~~~----~~Lvs~s~dg~I~vWd~~~~~~~~~~~h-~~~It~v~~sp~~-~~l~ 137 (1042)
||..- ..+..+ .++..++..|+|.+.. ..|++....++|.+||.++|+....+.. .....|+.++|-. +.+.
T Consensus 94 ~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99872 233334 4445788999998742 4788888899999999999995544443 3455679999866 4555
Q ss_pred EEeCCCcEEEEEccCCc-cceeeeeeecccc----------cccCcc-ccCCC------CEEEEEEccCCCCCeEEEEEC
Q 001628 138 LGDTAGKISVLKLDQES-SQIVKMKYIIPLS----------ASHGNE-VSGDP------AVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 138 sg~~dG~I~vwd~~~~~-~~~~~~~~~ip~~----------~~~~~~-~~~~~------~V~~v~~~p~~d~~~lls~~~ 199 (1042)
+-+..|.|.+-+.-... -......+.|... ...|.. ...+. -...++|+|. -.+.+++.+.
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~-~rn~lfi~~p 251 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH-WRNILFITFP 251 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh-hhceEEEEec
Confidence 55566777777643221 0000011111111 011110 00111 1224567884 5677777776
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE-ccCCCEEEEEecCCeEEEEeCCCccccccccCCccccccc
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA-CPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPIC 278 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~-~~~g~~l~sg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~ 278 (1042)
.+. .|+|++-..++... ....+.+.-+.|. +|....|.+++.||.+.+|-.......-. .|..
T Consensus 252 rel-lv~dle~~~~l~vv--------pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~-------~~~~ 315 (1062)
T KOG1912|consen 252 REL-LVFDLEYECCLAVV--------PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK-------KPNA 315 (1062)
T ss_pred cce-EEEcchhhceeEEE--------EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc-------ccch
Confidence 655 49999887766653 2333444445555 24456799999999999998765211100 1111
Q ss_pred cccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCCC
Q 001628 279 KLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNK 358 (1042)
Q Consensus 279 ~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 358 (1042)
.+ . +.-+.+..++ - ...-..+++.+ ..|
T Consensus 316 ~l--------------~--~dl~~Q~~~v---------------r-------------~m~~~rp~~~~-~cP------- 343 (1062)
T KOG1912|consen 316 SL--------------S--MDLGEQVHVV---------------R-------------PMEEFRPVIGA-SCP------- 343 (1062)
T ss_pred hh--------------c--cccccceEEE---------------e-------------echhcccceee-cCC-------
Confidence 01 0 0000000000 0 00000011111 111
Q ss_pred CCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccC----------------------CCCcceeEEEE
Q 001628 359 PKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMP----------------------FLDSSITAMKL 416 (1042)
Q Consensus 359 ~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~----------------------~h~~~vt~~~~ 416 (1042)
..++++.++..+|.+.+|.... +...............| .|.+..+|...
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~--------~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSN--------GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRM 415 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhc--------CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeec
Confidence 2345567777788888887432 10000000000001111 22333333332
Q ss_pred eecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCC
Q 001628 417 ITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFS 496 (1042)
Q Consensus 417 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~ 496 (1042)
.|... +......+ ++.. ..-.-.+++.|.+.|+|.++|+.++.+. .++.
T Consensus 416 ~p~p~-------------------~t~~~~~p-~~n~-~~~~~pLvAvGT~sGTV~vvdvst~~v~----------~~fs 464 (1062)
T KOG1912|consen 416 RPMPE-------------------LTKVENDP-GGNT-PAGTVPLVAVGTNSGTVDVVDVSTNAVA----------ASFS 464 (1062)
T ss_pred ccCcc-------------------cceeecCC-CCCc-cceeeeeEEeecCCceEEEEEecchhhh----------hhhc
Confidence 21111 11111111 1111 1112237899999999999999987543 4447
Q ss_pred CCCCCeEEEEEeCCCCEEEEEec---------cceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEE
Q 001628 497 LSGIPLTALYYDGTSRVLVSGDQ---------SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIIS 567 (1042)
Q Consensus 497 ~~~~~V~~l~fsp~~~~Lasg~~---------dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~ 567 (1042)
.|...|.++.|-...+++-.+.. -..+.|-++.++.... | +|.+. ....+|+.
T Consensus 465 vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---f-------R~l~~--------~despI~~ 526 (1062)
T KOG1912|consen 465 VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---F-------RGLQK--------PDESPIRA 526 (1062)
T ss_pred ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---c-------ccCCC--------CCcCccee
Confidence 88899999999887766543332 1234444444433211 1 11010 12389999
Q ss_pred EEEecCCcEEEEEecCCcEEEEeccCCeEE
Q 001628 568 LNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 597 (1042)
Q Consensus 568 l~~spdg~~La~gs~dg~V~vwD~~~~~~~ 597 (1042)
+..|..++|||+...+.-+-+||+++...+
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhccchHH
Confidence 999999999999999999999999775543
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2e-13 Score=139.74 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=104.4
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
..+.+|.+.|.++.|+.+++||++|+.|..+++|+++..-. .+.|..|... ...|...|.|++|.. ....+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~-----~~~H~SNIF~L~F~~--~N~~~ 120 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVM-----EHPHRSNIFSLEFDL--ENRFL 120 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceec-----cCccccceEEEEEcc--CCeeE
Confidence 45567999999999999999999999999999999987531 1122112111 223557999999998 77889
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++|..+++|.+-|+.+.+.+..+.. ....+.|..+..+ |..+.|++.+.+|.|.+||.+.
T Consensus 121 ~SG~~~~~VI~HDiEt~qsi~V~~~------~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQSIYVANE------NNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred ecCCCcceeEeeecccceeeeeecc------cCcccceeecccC-CCCceEEEEecCceEEEEeccC
Confidence 9999999999999999998876421 2234589999888 8899999999999999999987
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=1.9e-13 Score=135.09 Aligned_cols=203 Identities=17% Similarity=0.218 Sum_probs=150.4
Q ss_pred cccCceEEEEEcC-CCCEEEEEEcC-------CeEEEEecCCC--------eEEE--EecCCCcceEEEEEecCCCEEEE
Q 001628 36 GFPSGCNKFAYDP-LQKILAAATKD-------GRIKLYGRHNN--------TQAL--LESSEAVSTKFLQFLENQGILLN 97 (1042)
Q Consensus 36 G~~~~v~~la~sp-~~~~LA~gs~d-------g~I~iw~~~g~--------~~~~--~~~~~~~~v~~l~fs~~~~~Lvs 97 (1042)
.+++.|..++-+| ++++||+...+ ..+.||.++.. .+.+ +....-..|.++.|.||+..|++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3578899999998 56788887664 34678988711 1111 22222347899999999999998
Q ss_pred EeCCCCEEEEEcCCCc--eeee-----eecCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEccCCccceeeeeeeccccc
Q 001628 98 VTSTNLIEVWDIDKKR--LSHV-----HVCKEEITSFTIMQ--HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSA 168 (1042)
Q Consensus 98 ~s~dg~I~vWd~~~~~--~~~~-----~~h~~~It~v~~sp--~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~ 168 (1042)
.. |+.|.+|+++... ...+ ..+....++-+|+| +++.+ ....|+++..||+.+... .+.|
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~-----~~sI---- 209 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKK-----NNSI---- 209 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhh-----hcch----
Confidence 86 8999999998765 2222 23556788889999 34554 445688999999997652 1222
Q ss_pred ccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE
Q 001628 169 SHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG 248 (1042)
Q Consensus 169 ~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg 248 (1042)
+..|...|..+.|+|. ...+|++++.||.|++||.+.-+ ..++.+.+|..-|+++.|++.-.+.+++|
T Consensus 210 ----~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk-------~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 210 ----EDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTK-------FPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred ----hhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCC-------ccccccCCCceEEEEEEecCccceEEEec
Confidence 3345568999999994 45678889999999999998744 22445688999999999995567889999
Q ss_pred ecCCeEEEEeCCC
Q 001628 249 YSNGEILIWGVPS 261 (1042)
Q Consensus 249 ~~dG~I~iWd~~~ 261 (1042)
+.|..|.+|...+
T Consensus 278 ~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 278 GSDSAVNLSCASS 290 (370)
T ss_pred CCCceeEEEeccc
Confidence 9999999998765
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=6.6e-13 Score=137.63 Aligned_cols=195 Identities=12% Similarity=0.125 Sum_probs=148.3
Q ss_pred ccCceEEEEEcCCCC-EEEEEEcCCeEEEEecC----CC--eEE----EEecCCCcceEEEEEecCCCEEEEEeCCCCEE
Q 001628 37 FPSGCNKFAYDPLQK-ILAAATKDGRIKLYGRH----NN--TQA----LLESSEAVSTKFLQFLENQGILLNVTSTNLIE 105 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~-~LA~gs~dg~I~iw~~~----g~--~~~----~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~ 105 (1042)
....|..+.|.+... .||+|+.|..|+||... ++ ... .+ ..+...|+.+.|+|+|..|++|+++|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 456789999998877 99999999999999865 11 122 23 33447899999999999999999999999
Q ss_pred EEEcC--------C-----Cc----eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeeccccc
Q 001628 106 VWDID--------K-----KR----LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSA 168 (1042)
Q Consensus 106 vWd~~--------~-----~~----~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~ 168 (1042)
+|-.. + ++ ...+.+|...|..++|+|++.++++|+-|..+++||+..+.. ...
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--~~~-------- 160 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--LAI-------- 160 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee--Eee--------
Confidence 99766 3 22 345567999999999999999999999999999999999872 221
Q ss_pred ccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCC-------------cccccccc--cCCcee
Q 001628 169 SHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGG-------------NVLQSVYH--ETKQVT 233 (1042)
Q Consensus 169 ~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g-------------~~~~~~~~--~~~~I~ 233 (1042)
...|...|..++|.| ...++++-+.|...+.+++...+.++..+- ...+.+.. -..-..
T Consensus 161 ----~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 161 ----LDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ----ccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 234667899999999 799999999999888888877666555421 11111111 123345
Q ss_pred EEEEEccCCCEEEEEe
Q 001628 234 SACWACPIGSKVAVGY 249 (1042)
Q Consensus 234 ~l~~~~~~g~~l~sg~ 249 (1042)
.++|+ |+|..+++..
T Consensus 235 RlsfT-PdG~llvtPa 249 (434)
T KOG1009|consen 235 RLSFT-PDGSLLVTPA 249 (434)
T ss_pred hcccC-CCCcEEEccc
Confidence 67887 9999988864
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=2.4e-11 Score=135.93 Aligned_cols=146 Identities=11% Similarity=0.160 Sum_probs=96.5
Q ss_pred EEEEeCCCCEEEEEcCC-Cc--eeeeeecCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccC-Cccceeeeeeecccccc
Q 001628 95 LLNVTSTNLIEVWDIDK-KR--LSHVHVCKEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQ-ESSQIVKMKYIIPLSAS 169 (1042)
Q Consensus 95 Lvs~s~dg~I~vWd~~~-~~--~~~~~~h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~-~~~~~~~~~~~ip~~~~ 169 (1042)
.++...++.|.+|++.+ ++ ......+.+....++++|++++|++++ .++.|.+|+++. +. +.... .++
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--l~~~~-~~~---- 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--LTFAA-ESP---- 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--eEEee-eec----
Confidence 44556789999999964 44 223334556788899999999998875 478999999973 22 21111 110
Q ss_pred cCccccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEE-
Q 001628 170 HGNEVSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAV- 247 (1042)
Q Consensus 170 ~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~s- 247 (1042)
..+....++++| ++++++++. .++.|.+|++++...+.. ..... .+.....+++++ |+|+++++
T Consensus 78 ------~~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~----~~~~~-~~~~~~~~~~~~-p~g~~l~v~ 143 (330)
T PRK11028 78 ------LPGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVA----PIQII-EGLEGCHSANID-PDNRTLWVP 143 (330)
T ss_pred ------CCCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCC----ceeec-cCCCcccEeEeC-CCCCEEEEe
Confidence 122456899999 898888776 589999999975321100 01111 122345667787 89988754
Q ss_pred EecCCeEEEEeCCC
Q 001628 248 GYSNGEILIWGVPS 261 (1042)
Q Consensus 248 g~~dG~I~iWd~~~ 261 (1042)
...++.|.+||+..
T Consensus 144 ~~~~~~v~v~d~~~ 157 (330)
T PRK11028 144 CLKEDRIRLFTLSD 157 (330)
T ss_pred eCCCCEEEEEEECC
Confidence 55679999999975
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=1.8e-12 Score=130.27 Aligned_cols=167 Identities=11% Similarity=0.148 Sum_probs=108.7
Q ss_pred ceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-------e------eeee-ecCCCeEEEEEe-------CCCCEEEEEe
Q 001628 82 STKFLQFLENQGILLNVTSTNLIEVWDIDKKR-------L------SHVH-VCKEEITSFTIM-------QHSNYMLLGD 140 (1042)
Q Consensus 82 ~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-------~------~~~~-~h~~~It~v~~s-------p~~~~l~sg~ 140 (1042)
-.+...|+|||..|++-+.|+.+.+|++.... . ..+. .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34557899999999999999999999974311 1 1111 123455555553 7789999999
Q ss_pred CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEec-cCCeeEEEeCC
Q 001628 141 TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDI-RESKSIFSMGG 219 (1042)
Q Consensus 141 ~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~-~~~~~~~~~~g 219 (1042)
.+.-|++||.-+++.+ ..|.. +.+ ...-....+++|+| ||.+|+.|+ ...|+++|+ +.|+-...+.
T Consensus 131 r~~PIh~wdaftG~lr---aSy~~-----ydh-~de~taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~- 197 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLR---ASYRA-----YDH-QDEYTAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYT- 197 (406)
T ss_pred ccCceeeeeccccccc---cchhh-----hhh-HHhhhhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchh-
Confidence 9999999999988731 12221 111 00113567899999 999888876 568999999 5555222110
Q ss_pred cccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 220 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 220 ~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
...+...+..+-|.+++|++.+...+++|+.-.++-|+.-..
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 001112344667888899843445888888776666665443
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.1e-13 Score=136.19 Aligned_cols=150 Identities=11% Similarity=0.168 Sum_probs=116.0
Q ss_pred CEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccc
Q 001628 93 GILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQ--HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSAS 169 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp--~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~ 169 (1042)
..++++...|.|++||..++. +..+.+++..+..+.|.. ....+.+++.||+|++||+......- ...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~------ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWT------ 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heecc------
Confidence 468888899999999999987 788899999999999987 45889999999999999998865211 11110
Q ss_pred cCccccCCCCEEEEEEccCCCCCeEEEEE----CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEE
Q 001628 170 HGNEVSGDPAVINILPQPTAESKRILIIF----RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 170 ~~~~~~~~~~V~~v~~~p~~d~~~lls~~----~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l 245 (1042)
.....+..++..+- +.+.+++|. .+-.|.+||++..+.. .-.-...|...|++++|++.+.+.|
T Consensus 114 ----~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 114 ----QQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred ----CCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeE
Confidence 01124666777664 567777775 5778999999986631 1122367999999999997778999
Q ss_pred EEEecCCeEEEEeCCC
Q 001628 246 AVGYSNGEILIWGVPS 261 (1042)
Q Consensus 246 ~sg~~dG~I~iWd~~~ 261 (1042)
++|+.||.+.++|+..
T Consensus 182 lSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKK 197 (376)
T ss_pred EeecccceEEeeecCC
Confidence 9999999999999986
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=5.5e-14 Score=151.42 Aligned_cols=214 Identities=16% Similarity=0.278 Sum_probs=166.7
Q ss_pred cccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-------CC--eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-------NN--TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-------g~--~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
-|...|.+++|+|....|++|+.||.|++|+.+ +. ...+|..|. .||.|++..+++..+.+|+.||+|+.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-GPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-CceEEEEecCCceEEEeeccCceeee
Confidence 345678999999999999999999999999983 22 344566665 89999999999999999999999999
Q ss_pred EEcCCCc-----------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeee--eeecccc------
Q 001628 107 WDIDKKR-----------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKM--KYIIPLS------ 167 (1042)
Q Consensus 107 Wd~~~~~-----------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~--~~~ip~~------ 167 (1042)
|++.... ...+.+|.+.|+.+++++...+|++++.||+|+.|+......+.... .+.+|..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 9654211 34677899999999999999999999999999999976654200000 0111100
Q ss_pred --------cccC-----------------c-ccc---CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeC
Q 001628 168 --------ASHG-----------------N-EVS---GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMG 218 (1042)
Q Consensus 168 --------~~~~-----------------~-~~~---~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~ 218 (1042)
...+ . ... ....+.-+.++| ...+.+++..|+.|+++|..++..+..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~--~~~~~~~~hed~~Ir~~dn~~~~~l~s-- 526 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP--TADITFTAHEDRSIRFFDNKTGKILHS-- 526 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC--CCCeeEecccCCceecccccccccchh--
Confidence 0000 0 000 113577788999 789999999999999999999765554
Q ss_pred CcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 219 GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 219 g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
...|...++++++. |+|.+|++++.||.+++|.+..
T Consensus 527 ------~~a~~~svtslai~-~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 527 ------MVAHKDSVTSLAID-PNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ------eeeccceecceeec-CCCceEEeecCCceeehhhccc
Confidence 47889999999998 9999999999999999999875
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=1.3e-12 Score=129.42 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=115.3
Q ss_pred cceEEEEEec--CC-CEEEEEeC----CCCEEEEEcC--CCceeee--eecCCCeEEEEEeCCC-----CEEEEEeCCCc
Q 001628 81 VSTKFLQFLE--NQ-GILLNVTS----TNLIEVWDID--KKRLSHV--HVCKEEITSFTIMQHS-----NYMLLGDTAGK 144 (1042)
Q Consensus 81 ~~v~~l~fs~--~~-~~Lvs~s~----dg~I~vWd~~--~~~~~~~--~~h~~~It~v~~sp~~-----~~l~sg~~dG~ 144 (1042)
-++.++.|+. +. -+|+.|+- .|.|.|-.++ ++++... ..|+-+++.+-|.|+. ++||+.+ -.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3555677762 22 25666652 4667666544 4443332 5799999999999987 3455443 47
Q ss_pred EEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccc
Q 001628 145 ISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQS 224 (1042)
Q Consensus 145 I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~ 224 (1042)
+++|.+...+... .....+.... ...+..++++..|+.. +.+++.+.+-|-+..|||+.++.. |..-..
T Consensus 123 LRlWri~~ee~~~-~~~~~L~~~k----ns~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~-----~~vkTQ 191 (364)
T KOG0290|consen 123 LRLWRIGDEESRV-ELQSVLNNNK----NSEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVS-----GTVKTQ 191 (364)
T ss_pred EEEEeccCcCCce-ehhhhhccCc----ccccCCcccccccccC-CcceeEeecccCeEEEEEEeeccc-----cceeeE
Confidence 9999998543111 1111111111 2334579999999986 899999999999999999999732 222334
Q ss_pred ccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 225 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 225 ~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+..|..+|..++|.-..-+.|++.+.||+++++|++.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 5789999999999832346899999999999999987
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=139.44 Aligned_cols=175 Identities=19% Similarity=0.211 Sum_probs=134.5
Q ss_pred CEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEe
Q 001628 51 KILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIM 130 (1042)
Q Consensus 51 ~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~s 130 (1042)
..+++.++||++.|.+..|+++.....|. +.+.+-.|+|+|.-|+++++||.|++|.-......++......|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHA-AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhh-hhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence 57899999999999999988888888776 66777999999999999999999999986655566667778899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccC
Q 001628 131 QHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRE 210 (1042)
Q Consensus 131 p~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~ 210 (1042)
|+.+-++-+ ..|.+.+=-+....- . .. | ..|++-|.++.|+| ..+.+++|++|-..+|||...
T Consensus 155 p~S~~vl~c-~g~h~~IKpL~~n~k-~--i~------W-----kAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 155 PNSNSIVFC-QGGHISIKPLAANSK-I--IR------W-----RAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred CCCCceEEe-cCCeEEEeecccccc-e--eE------E-----eccCcEEEEeecCc--cccceeecCCceeEEeecccC
Confidence 998654433 233444444333210 1 11 1 23789999999999 799999999999999999873
Q ss_pred CeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEE
Q 001628 211 SKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEIL 255 (1042)
Q Consensus 211 ~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~ 255 (1042)
..+.....|+.+|++++|. |+ ..++.++.+ +++
T Consensus 218 ---------~~Lf~S~~~ey~ITSva~n-pd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 218 ---------ANLFTSAAEEYAITSVAFN-PE-KDYLLWSYN-TAR 250 (737)
T ss_pred ---------cccccCChhccceeeeeec-cc-cceeeeeee-eee
Confidence 2333447789999999998 88 666666544 444
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=6.8e-13 Score=133.38 Aligned_cols=177 Identities=16% Similarity=0.279 Sum_probs=120.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEecCCCeEE--EEecCCCcceEEEEEecCCCEEEEE-eCCCCEEEEEcCCCc-eeeee
Q 001628 43 KFAYDPLQKILAAATKDGRIKLYGRHNNTQA--LLESSEAVSTKFLQFLENQGILLNV-TSTNLIEVWDIDKKR-LSHVH 118 (1042)
Q Consensus 43 ~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~--~~~~~~~~~v~~l~fs~~~~~Lvs~-s~dg~I~vWd~~~~~-~~~~~ 118 (1042)
-..|+|+|++||+..+- ++.|=|.. ..+. ++.. -..|..+.|..+.-+++++ ..++.|.+|++...+ ...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~-tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSE-TLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccc-hhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 36799999999999875 67777766 3321 1111 2356679999998777765 467899999999888 66677
Q ss_pred ecCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 119 VCKEEITSFTIMQHSNYML-LGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~-sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
.-+..+.++.|||+|+.++ +..-+-.|.||.+.+... +.+|.. +..+..++|+| +|.+.++.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~p---------K~~~kg~~f~~--dg~f~ai~ 151 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHP---------KTNVKGYAFHP--DGQFCAIL 151 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee------EEeccc---------ccCceeEEECC--CCceeeee
Confidence 7788999999999996555 555688999999998763 222221 34567899999 99988888
Q ss_pred ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEE
Q 001628 198 FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVA 246 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~ 246 (1042)
+.....-..++..-+. -..++.+....-..+.+.|+ |||+.|+
T Consensus 152 sRrDCkdyv~i~~c~~-----W~ll~~f~~dT~DltgieWs-Pdg~~la 194 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKA-----WILLKEFKLDTIDLTGIEWS-PDGNWLA 194 (447)
T ss_pred ecccHHHHHHHHhhHH-----HHHHHhcCCCcccccCceEC-CCCcEEE
Confidence 7543221222211000 01122334456677889998 9998744
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.2e-12 Score=128.58 Aligned_cols=108 Identities=12% Similarity=0.278 Sum_probs=78.6
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE-EEEECCCeEEE
Q 001628 127 FTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI-LIIFRDGLISL 205 (1042)
Q Consensus 127 v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l-ls~~~dg~I~v 205 (1042)
+.|||+|+|+++.... .+.|=|..+.++ .++ +. .-..|..+.|.- |..++ ...+.++.|.+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~ql-f~------------cldki~yieW~a--ds~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQL--HQL-FL------------CLDKIVYIEWKA--DSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhH--HHH-HH------------HHHHhhheeeec--cceeeeeeeeccceEEE
Confidence 4699999999999877 677777776552 111 10 013677788886 66555 45678999999
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCC-EEEEEecCCeEEEEeCCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGS-KVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~-~l~sg~~dG~I~iWd~~~ 261 (1042)
|++...+--..+ ......+.+++|+ |||+ .|.+...|-.|.+|.+.+
T Consensus 76 wsl~Qpew~ckI--------deg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 76 WSLVQPEWYCKI--------DEGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred EEeecceeEEEe--------ccCCCcceeeeEC-CCcceEeeeecceeEEEEEEecc
Confidence 999986644443 4457789999998 9995 555666788999999987
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=3.2e-14 Score=158.70 Aligned_cols=112 Identities=12% Similarity=0.203 Sum_probs=99.5
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~ 113 (1042)
.||-..|.|++|+..|+++.+|+.|-.|+||..+ +.....+.+|. ..++.++.+.+.-++++++.|..|+||.+.++.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs-~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS-GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc-cccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 4788889999999999999999999999999987 23445556666 778899999998899999999999999999999
Q ss_pred -eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001628 114 -LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 114 -~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~ 151 (1042)
+..+.+|++.||+++|+|.. +.+.||++++||..
T Consensus 266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 77889999999999999965 77889999999987
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=1.6e-12 Score=130.91 Aligned_cols=212 Identities=12% Similarity=0.133 Sum_probs=165.6
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCC----eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc-CC
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNN----TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI-DK 111 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~----~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~-~~ 111 (1042)
+..+|+|.||++++..+|++..+..|.||...|. ..+++..| ...|+.++|.|..+.|++++.|..-+||.. ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 4678999999999999999999999999988742 23344444 478999999999999999999999999998 44
Q ss_pred Cc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 112 KR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 112 ~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
+. ...+..+...++|+.|+|..+.+++|+....|.||-++.+.. ..+.... .......|+++.|+|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------WWVsKhi----kkPirStv~sldWhp- 156 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------WWVSKHI----KKPIRSTVTSLDWHP- 156 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------eehhhhh----CCccccceeeeeccC-
Confidence 44 567788999999999999999999999999999999887641 1110000 123456899999999
Q ss_pred CCCCeEEEEECCCeEEEEecc-----CCeeEEEeC-----CcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEe
Q 001628 189 AESKRILIIFRDGLISLWDIR-----ESKSIFSMG-----GNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~-----~~~~~~~~~-----g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
++-.|+.|+.|+..+|+..- +...-...| |.+...+....+.+..+.|+ |+|..|+-.+.|+.+.+-|
T Consensus 157 -nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 157 -NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred -CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEee
Confidence 88889999999999998642 211111111 12223334556789999998 9999999999999999999
Q ss_pred CCCc
Q 001628 259 VPSI 262 (1042)
Q Consensus 259 ~~~~ 262 (1042)
...+
T Consensus 235 a~~p 238 (361)
T KOG1523|consen 235 AAGP 238 (361)
T ss_pred cCCC
Confidence 8764
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.8e-11 Score=118.41 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=141.8
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecC----------CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRH----------NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~----------g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~ 109 (1042)
+|.+-|++|.+++|++|..+|+|.++... |+....-...+..++..|.|..+ +|++++. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccC-ceEEEeee
Confidence 45667899999999999999999999865 22222222344589999999944 5777655 99999976
Q ss_pred CCCc-------eeee--eecC-----CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcccc
Q 001628 110 DKKR-------LSHV--HVCK-----EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVS 175 (1042)
Q Consensus 110 ~~~~-------~~~~--~~h~-----~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~ 175 (1042)
.... +..+ ..|. -.|.++.+.|..+-++.++.||.++.||++++.. +.. ..+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i---~r~-----------~rG 154 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI---QRE-----------YRG 154 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE---EEE-----------EcC
Confidence 5321 1111 1122 3689999999998888888999999999999872 222 244
Q ss_pred CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccc-cccccc-CCceeEEEEEccCCCEEEEEecCCe
Q 001628 176 GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL-QSVYHE-TKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~-~~~~~~-~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
|...|.++.-.. ....+++|++||++++||.++++.+..++.-.. .....| ...|-+++ .+.++++||+.- .
T Consensus 155 HtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGgGp-~ 228 (325)
T KOG0649|consen 155 HTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGGGP-K 228 (325)
T ss_pred Ccceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe---ccCceEEecCCC-c
Confidence 677888888754 456799999999999999999998877643221 111222 33455553 457888887654 6
Q ss_pred EEEEeCCC
Q 001628 254 ILIWGVPS 261 (1042)
Q Consensus 254 I~iWd~~~ 261 (1042)
+.+|.+++
T Consensus 229 lslwhLrs 236 (325)
T KOG0649|consen 229 LSLWHLRS 236 (325)
T ss_pred eeEEeccC
Confidence 89999986
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=8.3e-13 Score=130.61 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=154.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCC--CeEEEEe----cCCCcceEEEEEec--CCCEEEEEeCCCCEEEEEcC
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHN--NTQALLE----SSEAVSTKFLQFLE--NQGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g--~~~~~~~----~~~~~~v~~l~fs~--~~~~Lvs~s~dg~I~vWd~~ 110 (1042)
+.|.|+.|.|++..||+-. |..|.+|+.+. .+...+. .......+.-+|+| ++..+++ ..|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc
Confidence 4799999999999999887 67899999872 2122222 22234566677888 5655555 467999999999
Q ss_pred CCc-e-eeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc
Q 001628 111 KKR-L-SHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 111 ~~~-~-~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p 187 (1042)
+.. . ..-..|...|..+.|.|+. .+|++|+.||.|++||....+. |... ...|...|.++.|+|
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------pv~e----l~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------PVQE----LPGHSHWVWAVRFNP 268 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---------cccc----cCCCceEEEEEEecC
Confidence 876 2 3335688889999999998 5678999999999999887542 1111 123466999999999
Q ss_pred CCCCCeEEEEECCCeEEEEeccCCeeE--EEe-------------------CCcccccccccCCceeEEEEEccCCCEEE
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSI--FSM-------------------GGNVLQSVYHETKQVTSACWACPIGSKVA 246 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~vWd~~~~~~~--~~~-------------------~g~~~~~~~~~~~~I~~l~~~~~~g~~l~ 246 (1042)
. ....+++++.|..|.+|....-... ..+ ....+.++..|...|.+++|++.+.-.|+
T Consensus 269 ~-hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 269 E-HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred c-cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 6 6788999999999999987542211 111 12235577889999999999988899999
Q ss_pred EEecCCeEEEEeCCC
Q 001628 247 VGYSNGEILIWGVPS 261 (1042)
Q Consensus 247 sg~~dG~I~iWd~~~ 261 (1042)
+-+.||.+.|=++..
T Consensus 348 SLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 348 SLSYDGRVIISSVPR 362 (370)
T ss_pred EeccCceEEeecCCh
Confidence 999999999977764
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=2.4e-11 Score=135.85 Aligned_cols=193 Identities=12% Similarity=0.137 Sum_probs=125.0
Q ss_pred EEEEEcCCeEEEEecC--CCeEEEEecCCCcceEEEEEecCCCEEEEEe-CCCCEEEEEcCC-Cceeeee--ecCCCeEE
Q 001628 53 LAAATKDGRIKLYGRH--NNTQALLESSEAVSTKFLQFLENQGILLNVT-STNLIEVWDIDK-KRLSHVH--VCKEEITS 126 (1042)
Q Consensus 53 LA~gs~dg~I~iw~~~--g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s-~dg~I~vWd~~~-~~~~~~~--~h~~~It~ 126 (1042)
.++...++.|.+|+.. |....+-..+.......+.++|++++|++++ .++.|.+|+++. +.+.... ...+....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3444668999999985 3333222222223455699999999887664 578899999973 4433222 23456788
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE-CCCeEE
Q 001628 127 FTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF-RDGLIS 204 (1042)
Q Consensus 127 v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~ 204 (1042)
++++|++++|+++.. +|.|.+|+++.... .......+ .+.....+++++| ++.+++++. .++.|.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~----------~~~~~~~~~~~~p--~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGI-PVAPIQII----------EGLEGCHSANIDP--DNRTLWVPCLKEDRIR 151 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCC-CCCceeec----------cCCCcccEeEeCC--CCCEEEEeeCCCCEEE
Confidence 999999999998875 88999999974321 10000011 0113456788999 888886655 569999
Q ss_pred EEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec-CCeEEEEeCCC
Q 001628 205 LWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS-NGEILIWGVPS 261 (1042)
Q Consensus 205 vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~-dG~I~iWd~~~ 261 (1042)
+||+.+...+......... .........+.|+ |+|.+++++.. ++.|.+|++..
T Consensus 152 v~d~~~~g~l~~~~~~~~~--~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVT--TVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEECCCCcccccCCCcee--cCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 9999873322100000000 0112345578898 99999988876 89999999974
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=2.5e-12 Score=137.61 Aligned_cols=125 Identities=13% Similarity=0.205 Sum_probs=102.5
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCc
Q 001628 496 SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQ 575 (1042)
Q Consensus 496 ~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~ 575 (1042)
......|...+|+||+++||+.+.||.+|||++....+.. .+ +..+ +...|++|||||+
T Consensus 287 ~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--~m---------kSYF----------GGLLCvcWSPDGK 345 (636)
T KOG2394|consen 287 HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--VM---------KSYF----------GGLLCVCWSPDGK 345 (636)
T ss_pred EeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH--HH---------Hhhc----------cceEEEEEcCCcc
Confidence 3344689999999999999999999999999999766543 12 3344 8899999999999
Q ss_pred EEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCC--------------------------------
Q 001628 576 HLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF-------------------------------- 623 (1042)
Q Consensus 576 ~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~-------------------------------- 623 (1042)
++++|++|-.|.||.+...+++.+++ +|++.|..++|.||.....
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~ 422 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC 422 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEecc---ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence 99999999999999999999987666 5899999999997643110
Q ss_pred ----------CceEEEEEeCCceEEEEECCC
Q 001628 624 ----------EKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 624 ----------~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
..-.+.+.+.|..+++||+..
T Consensus 423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccccccceEEEeecccccceEEEEecch
Confidence 113567888999999999873
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6e-12 Score=131.82 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=111.3
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCC-----CEEEEEeccceEEEEEec
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-----RVLVSGDQSGMVRIFKLK 529 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-----~~Lasg~~dG~V~vw~~~ 529 (1042)
|++++.+|++-+.| ..++|+...+. .+.++.+ .........+.|+.++ ++++.....+.|+.|++.
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~--~~a~~t~------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGA--ALARKTP------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCc--hhhhcCC------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEee
Confidence 34444488888888 89999999872 2333321 2233556777888877 555566667888888876
Q ss_pred cCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCC
Q 001628 530 YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSG 609 (1042)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~ 609 (1042)
..... ++. +..........|++|+.|+||+++|.|+.||.|.|++..+.+.++... ..|..-
T Consensus 265 ~w~~~---~~l-------------~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~ 326 (398)
T KOG0771|consen 265 LWSGS---NFL-------------RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--EAHLGF 326 (398)
T ss_pred eeccc---ccc-------------chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--hhheee
Confidence 43331 110 001111122679999999999999999999999999998877763222 236779
Q ss_pred eEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 610 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 610 V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
|+.|.|+| +.+++++.+.|....|..+.
T Consensus 327 VT~ltF~P------dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 327 VTGLTFSP------DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeeEEEcC------CcCcccccccCCceeEEEEe
Confidence 99999999 99999999999999988865
No 202
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=1.3e-09 Score=126.56 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=150.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceE---EEEEecCCCEEEEEeCCCCEEEEEcCCCc-ee
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTK---FLQFLENQGILLNVTSTNLIEVWDIDKKR-LS 115 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~---~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~ 115 (1042)
|....+.-+...+|+++.+..+.+|+..+ .+.....+....... -+.++++.-++++|+.-+.|.+|+..... ..
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 33344555678899999999999999873 222223333322222 23456777789999999999999987433 45
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
.+.+|++.|..+.++-++.++++.++|.++++|++++.+. .. ....+|.+.|..+.|.| + +++
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~--~~-----------~~~fgHsaRvw~~~~~~--n--~i~ 232 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV--LG-----------CTGFGHSARVWACCFLP--N--RII 232 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc--cC-----------cccccccceeEEEEecc--c--eeE
Confidence 6899999999999999999999999999999999999762 10 11345789999999998 5 899
Q ss_pred EEECCCeEEEEeccCCeeEEEeCCccccccccc-CCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 196 IIFRDGLISLWDIRESKSIFSMGGNVLQSVYHE-TKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 196 s~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~-~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+++.|.+.++|+.+..+ +..+.+| ...|..++.. ++....+|++.||.+++|+....
T Consensus 233 t~gedctcrvW~~~~~~---------l~~y~~h~g~~iw~~~~~-~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQ---------LEVYDEHSGKGIWKIAVP-IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EeccceEEEEEecccce---------ehhhhhhhhcceeEEEEc-CCceEEEeeccCcchhhhhhhcc
Confidence 99999999999776433 3344555 5678889887 88899999999999999998763
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=9.6e-11 Score=120.59 Aligned_cols=195 Identities=14% Similarity=0.210 Sum_probs=138.1
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEe-cCCCcceEEEEEecCCCEEEEEeCC--CCEEEEEcCCCce
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLE-SSEAVSTKFLQFLENQGILLNVTST--NLIEVWDIDKKRL 114 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~d--g~I~vWd~~~~~~ 114 (1042)
+.++..+.|.-+..+|++|+.|| -++|... .....+. ......|..+-|+.. ++|.++.+ +.+++.+...+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~-~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCS-PFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecC-chHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 44567777999999999999999 7888877 3332222 223345555667655 45555543 4599999988887
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
.+-...+..|.++.+.. ++|++.-++. |+|||+.+.++ ..+|... ..+...+.++++++ ++.++
T Consensus 81 ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~------~~n~~gl~AlS~n~--~n~yl 144 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKL-----LHTIETT------PPNPKGLCALSPNN--ANCYL 144 (391)
T ss_pred EEEEecCCceEEEEEcc--ceEEEEEccc-EEEEeccccee-----ehhhhcc------CCCccceEeeccCC--CCceE
Confidence 66677888899988854 6677776664 99999998762 1222111 11234566666665 66676
Q ss_pred EEEE--CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeE-EEEeCCC
Q 001628 195 LIIF--RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEI-LIWGVPS 261 (1042)
Q Consensus 195 ls~~--~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I-~iWd~~~ 261 (1042)
+--+ ..|.|.|||..+-+.+..+ ..|.+.+.+++|+ ++|..|||++..|+| +|+.+.+
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I--------~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTI--------NAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEE--------EecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCC
Confidence 6543 5689999999997766654 7899999999998 999999999999874 6666655
No 204
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.45 E-value=3e-12 Score=132.03 Aligned_cols=213 Identities=15% Similarity=0.242 Sum_probs=150.8
Q ss_pred CcCceeeeeecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecCC--------CeEEEEecCCCcceEEEEEecC-CCEE
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRHN--------NTQALLESSEAVSTKFLQFLEN-QGIL 95 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~g--------~~~~~~~~~~~~~v~~l~fs~~-~~~L 95 (1042)
.+|...=.-.||.+.|..++|+|- ...||+|+.|.+|.||.+.. .....+.+|. ..|-.++|+|. .+.|
T Consensus 69 r~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~-rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 69 RMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ-RRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc-eeEEEEeecccchhhH
Confidence 344444455799999999999994 46899999999999999861 3345566766 56777999995 4589
Q ss_pred EEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccc
Q 001628 96 LNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEV 174 (1042)
Q Consensus 96 vs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~ 174 (1042)
++++.|++|.+||+.+++ +.++. |++.|+++.|+.+|.+|++.+.|..|+|||..++.. .... .+|+
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~--v~e~--------~~he- 215 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV--VSEG--------VAHE- 215 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE--eeec--------cccc-
Confidence 999999999999999999 55554 999999999999999999999999999999998873 1111 0111
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEE---CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCE-EEEEec
Q 001628 175 SGDPAVINILPQPTAESKRILIIF---RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSK-VAVGYS 250 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~---~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~-l~sg~~ 250 (1042)
...-..+.|-- ++..+-+|. ++..+.+||...-..-.. ++.+. ....|.-=-|. ++.+. .++|-.
T Consensus 216 --G~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~eP~~-----~~elD-tSnGvl~PFyD-~dt~ivYl~GKG 284 (472)
T KOG0303|consen 216 --GAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLEEPIA-----LQELD-TSNGVLLPFYD-PDTSIVYLCGKG 284 (472)
T ss_pred --CCCcceeEEec--cCceeeeccccccccceeccCcccccCcce-----eEEec-cCCceEEeeec-CCCCEEEEEecC
Confidence 11223344554 677444554 577899999876321000 11111 12334433454 66555 456668
Q ss_pred CCeEEEEeCCCc
Q 001628 251 NGEILIWGVPSI 262 (1042)
Q Consensus 251 dG~I~iWd~~~~ 262 (1042)
|+.|+.|.+...
T Consensus 285 D~~IRYyEit~d 296 (472)
T KOG0303|consen 285 DSSIRYFEITNE 296 (472)
T ss_pred CcceEEEEecCC
Confidence 999999999874
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.44 E-value=4.7e-11 Score=139.55 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=150.3
Q ss_pred cCce--eeee-ecccCceEEEEEcCCC-CEEEEEEcCCeEEEEecC---CC---eEEEEe-cCCCcceEEEEEecCCCEE
Q 001628 27 VDPR--LVFH-YGFPSGCNKFAYDPLQ-KILAAATKDGRIKLYGRH---NN---TQALLE-SSEAVSTKFLQFLENQGIL 95 (1042)
Q Consensus 27 ~~~~--~~~~-~G~~~~v~~la~sp~~-~~LA~gs~dg~I~iw~~~---g~---~~~~~~-~~~~~~v~~l~fs~~~~~L 95 (1042)
|.|+ .++| |-|...+..+|.++.. .++++|+.||+|++|+.. |+ ....+. ......+..+.+.+++..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 5555 4556 6777778888887766 999999999999999976 11 111222 2255788899999999999
Q ss_pred EEEeCCCCEEEEEcCCCc---eeeee-----e-cCCCeEE-EEEeCCC--CEEEEEeCCCcEEEEEccCCccceeeeeee
Q 001628 96 LNVTSTNLIEVWDIDKKR---LSHVH-----V-CKEEITS-FTIMQHS--NYMLLGDTAGKISVLKLDQESSQIVKMKYI 163 (1042)
Q Consensus 96 vs~s~dg~I~vWd~~~~~---~~~~~-----~-h~~~It~-v~~sp~~--~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ 163 (1042)
|+++.||.|++.+++.-. ..... . ..+.+.. -++.... ..|+.++..+.|..||+..... ...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-----~w~ 1188 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-----AWR 1188 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-----HHh
Confidence 999999999999988722 11111 1 1233443 3343322 4788899999999999887541 122
Q ss_pred cccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE--ccC
Q 001628 164 IPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA--CPI 241 (1042)
Q Consensus 164 ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~--~~~ 241 (1042)
+.... ..+.|++++.+| .++++++|+..|.+.+||++=+..+..+. ..+..+|..++.. .+.
T Consensus 1189 lk~~~-------~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1189 LKNQL-------RHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWE-------HPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred hhcCc-------cccceeEEEecC--CceEEEEecCCceEEEEEeecCceeeccc-------CcccCCcceEEeeccCCC
Confidence 22222 247899999999 79999999999999999999877666542 3345667766553 122
Q ss_pred CCEEEEEe--cCCeEEEEeCCCc
Q 001628 242 GSKVAVGY--SNGEILIWGVPSI 262 (1042)
Q Consensus 242 g~~l~sg~--~dG~I~iWd~~~~ 262 (1042)
....++++ ..+.|.+|++.++
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred CceEEEecccCCCceeeeecccC
Confidence 24555444 5788999999987
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.5e-12 Score=136.18 Aligned_cols=199 Identities=15% Similarity=0.182 Sum_probs=150.5
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEE-ecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeee-
Q 001628 42 NKFAYDPLQKILAAATKDGRIKLYGRHNNTQALL-ESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVH- 118 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~-~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~- 118 (1042)
-++||+++++.||+|..||.+|||+.+ .....+ ...+...|.+|.|+||+++|++.+.| ..+||+.+++. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999999999999999999999977 444433 34445789999999999999999999 99999999986 33222
Q ss_pred -ecCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 119 -VCKEEITSFTIMQHS-----NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 119 -~h~~~It~v~~sp~~-----~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
.-+.....+.|+.+. ...+.-...+.|+.|++...... ..+ +... .......|+++..++ +|+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l----~~~~----~~~~~~siSsl~VS~--dGk 294 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL----RLRK----KIKRFKSISSLAVSD--DGK 294 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc----chhh----hhhccCcceeEEEcC--CCc
Confidence 233456677887776 22233334567888776654311 000 0000 112235899999999 999
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+++.|+.||.|.|++..+-+.++.. ...|...|+.+.|+ |+.+.+++.+.|..+.+..+.-
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~v-------k~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYV-------KEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEee-------hhhheeeeeeEEEc-CCcCcccccccCCceeEEEEee
Confidence 9999999999999999987766553 36788999999998 9999999999999998887764
No 207
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=7.3e-12 Score=129.22 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=114.8
Q ss_pred CCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC
Q 001628 495 FSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN 573 (1042)
Q Consensus 495 ~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd 573 (1042)
+.+|.++|..++|+|.+ ..+|+|++|.+|.||.+..+.+.. .+.-|.+.+.+|...|--++|+|.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------~ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------DLTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--------------CcccceEEEeecceeEEEEeeccc
Confidence 37999999999999965 788999999999999998765533 222344788899999999999996
Q ss_pred C-cEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 574 S-QHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 574 g-~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
. +.|++++.|.+|.+||+.+++.++... |...|.++.|+- +|.+|++++.|..|+|||..+|+++...
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~------dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNR------DGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEecc------CCceeeeecccceeEEEcCCCCcEeeec
Confidence 4 679999999999999999998774422 677999999998 9999999999999999999999999776
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.3e-12 Score=135.22 Aligned_cols=213 Identities=11% Similarity=0.154 Sum_probs=152.0
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecC--CCEEEEEeCCCCEEEEEcCC
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLEN--QGILLNVTSTNLIEVWDIDK 111 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~--~~~Lvs~s~dg~I~vWd~~~ 111 (1042)
-+|++.|..+.|...|.+|++|+.|-.|.+||.. +.....+...|...|-.-.|.|. .+.+++.+.||.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4788999999999999999999999999999976 23333444434344444567773 34799999999999877543
Q ss_pred -Cc---eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 112 -KR---LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 112 -~~---~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
+. ...+..|.++|.-+++.|+. .-++++++|+.+.-+|+....- ....+.- .. .....-....++.+
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p--a~~~~cr---~~---~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP--AEKFVCR---EA---DEKERVGLYTIAVD 290 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc--cceeeee---cc---CCccceeeeeEecC
Confidence 32 45677899999999999998 5678999999999999887641 1111110 00 00001356789999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeE------EEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeC
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSI------FSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~------~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~ 259 (1042)
|. +.+.+++++.|-.+++||...-... ..+-. ..........|++++|+ .++.-+++.+.|-.|++++-
T Consensus 291 P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p--~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 291 PR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP--HHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred CC-CccccccCChhhhhhhhcccchhhccccchhhhcCC--ccccccCcccceeEEec-CCccceeeeecccceEEecc
Confidence 96 7889999999999999998753211 11100 00112335679999998 78888888899988998843
No 209
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=8.4e-08 Score=118.61 Aligned_cols=210 Identities=13% Similarity=0.123 Sum_probs=131.0
Q ss_pred CceEEEEEcCCCCEEEEEEcCCe----EEEE--ecCCCeEEEEec------CCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 39 SGCNKFAYDPLQKILAAATKDGR----IKLY--GRHNNTQALLES------SEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~----I~iw--~~~g~~~~~~~~------~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
..+...+|++....+.++..... |.+. ...+....+... .....|.++.|.++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35777888887765544444322 3332 222222222222 23467888999999999999999999999
Q ss_pred E----EcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceee---------eeeeccccc----c
Q 001628 107 W----DIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVK---------MKYIIPLSA----S 169 (1042)
Q Consensus 107 W----d~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~---------~~~~ip~~~----~ 169 (1042)
. +..+..+...-..+..|.|++||||...|+..+.+|+|.+..-+=..+.-.. .+..+.|-. -
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 9 7777777777788899999999999999999999999988753211100000 001111110 0
Q ss_pred cCc---c-----------------ccCCCCEEEEEEccCCCCCeEEEEEC---C---CeEEEEeccCCeeEEEeCCcccc
Q 001628 170 HGN---E-----------------VSGDPAVINILPQPTAESKRILIIFR---D---GLISLWDIRESKSIFSMGGNVLQ 223 (1042)
Q Consensus 170 ~~~---~-----------------~~~~~~V~~v~~~p~~d~~~lls~~~---d---g~I~vWd~~~~~~~~~~~g~~~~ 223 (1042)
+|. . ...+..-..|+|.. ||.++++.+- . ..++||+-+ |.....
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st------- 251 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-GELQST------- 251 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-------
Confidence 111 0 00233556788998 9999999884 2 578999877 432222
Q ss_pred cccccCCceeEEEEEccCCCEEEEEec---CCeEEEEeCC
Q 001628 224 SVYHETKQVTSACWACPIGSKVAVGYS---NGEILIWGVP 260 (1042)
Q Consensus 224 ~~~~~~~~I~~l~~~~~~g~~l~sg~~---dG~I~iWd~~ 260 (1042)
...-.+--.+++|. |.|+.||+... ...|.+|.-+
T Consensus 252 -SE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 252 -SEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred -cccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC
Confidence 11122233467998 99999998764 2345555444
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=6e-10 Score=112.65 Aligned_cols=299 Identities=15% Similarity=0.176 Sum_probs=174.0
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE-EEECC-
Q 001628 123 EITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL-IIFRD- 200 (1042)
Q Consensus 123 ~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll-s~~~d- 200 (1042)
....++|..|...+++|.++| .++|+.+.-....... . .. ..-.++-+.|. .++++ +|+.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--~---------~~-~G~~~veMLfR----~N~laLVGGg~~ 69 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--F---------ID-GGFKIVEMLFR----SNYLALVGGGSR 69 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--c---------cc-CchhhhhHhhh----hceEEEecCCCC
Confidence 345589999999999999888 7889887633100000 0 00 01234444554 34443 33322
Q ss_pred -----CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcc-ccccccCCccc
Q 001628 201 -----GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSIL-NLKTEECGTQI 274 (1042)
Q Consensus 201 -----g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~-~~~~~~~~~~~ 274 (1042)
+.|.|||-...+++.+ .....+|.++++. ...|++.- .+.|++|...+.. .++....
T Consensus 70 pky~pNkviIWDD~k~~~i~e---------l~f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~et---- 132 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIE---------LSFNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIET---- 132 (346)
T ss_pred CCCCCceEEEEecccCcEEEE---------EEeccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeeec----
Confidence 5788999766666554 3456789999886 55666655 4589999998521 1110000
Q ss_pred cccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCC
Q 001628 275 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSS 354 (1042)
Q Consensus 275 ~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (1042)
. .+|++-..+ .-. .. .....
T Consensus 133 ----------------------~-~NPkGlC~~----------------~~~--------------~~--k~~La----- 152 (346)
T KOG2111|consen 133 ----------------------R-SNPKGLCSL----------------CPT--------------SN--KSLLA----- 152 (346)
T ss_pred ----------------------c-cCCCceEee----------------cCC--------------CC--ceEEE-----
Confidence 0 011110000 000 00 00000
Q ss_pred CCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEEeecCccccccchhHHHhh
Q 001628 355 DPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLL 434 (1042)
Q Consensus 355 ~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~~~~~~~~~s~~~~~~~~~ 434 (1042)
+=..+.|+|.+.|+..... -.+...+.|.+.|.|++...+|
T Consensus 153 ----------fPg~k~GqvQi~dL~~~~~---------------~~p~~I~AH~s~Iacv~Ln~~G-------------- 193 (346)
T KOG2111|consen 153 ----------FPGFKTGQVQIVDLASTKP---------------NAPSIINAHDSDIACVALNLQG-------------- 193 (346)
T ss_pred ----------cCCCccceEEEEEhhhcCc---------------CCceEEEcccCceeEEEEcCCc--------------
Confidence 1112457888888443220 0235567999999999955444
Q ss_pred hhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCc-EEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCE
Q 001628 435 AKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGA-INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRV 513 (1042)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~-IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~ 513 (1042)
.++||++..|+ |||||..++... +.++ . ....+.|.+|+|+|++.+
T Consensus 194 -------------------------t~vATaStkGTLIRIFdt~~g~~l--~E~R----R--G~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 194 -------------------------TLVATASTKGTLIRIFDTEDGTLL--QELR----R--GVDRADIYCIAFSPNSSW 240 (346)
T ss_pred -------------------------cEEEEeccCcEEEEEEEcCCCcEe--eeee----c--CCchheEEEEEeCCCccE
Confidence 49999999998 899999988543 3332 1 233488999999999999
Q ss_pred EEEEeccceEEEEEeccCCcccc--c--ceee-ecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEE
Q 001628 514 LVSGDQSGMVRIFKLKYEPHAIE--N--SFLS-FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYL 588 (1042)
Q Consensus 514 Lasg~~dG~V~vw~~~~~~~~~~--~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~v 588 (1042)
||+++.-|+|.||.+........ . .+.. +-... .......+.+....++..-++|..+.+.++.-+.||+.+=
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky--~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k 318 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKY--FSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYK 318 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchh--cccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence 99999999999999986543221 0 0000 00000 0001111445555678888888877566666666777544
Q ss_pred E
Q 001628 589 L 589 (1042)
Q Consensus 589 w 589 (1042)
+
T Consensus 319 ~ 319 (346)
T KOG2111|consen 319 F 319 (346)
T ss_pred E
Confidence 3
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.9e-11 Score=116.09 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=121.0
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCce---eeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccC
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLF---LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 531 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~---~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~ 531 (1042)
++|.+++|+.|..+|.|.+..+..-.- .+--++. .-...+|..+|..++|. ..+|.+|+ ||.|+=|.+...
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~---iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK---IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc---eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 678888999999999999998764211 0000000 01226899999999998 34566555 499999999754
Q ss_pred CcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--EecccccccCCC
Q 001628 532 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSG 609 (1042)
Q Consensus 532 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~ 609 (1042)
........ .|+-..+. -.-...--.|.+|-..|..+-+..++.|+.++-||++++++. |++|.. .
T Consensus 92 ~es~~~K~-----lwe~~~P~---~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-----Y 158 (325)
T KOG0649|consen 92 EESLATKR-----LWEVKIPM---QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-----Y 158 (325)
T ss_pred hhhccchh-----hhhhcCcc---ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-----e
Confidence 33110000 00000010 000111146899999998877777779999999999999986 666644 9
Q ss_pred eEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecC
Q 001628 610 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 654 (1042)
Q Consensus 610 V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~ 654 (1042)
|.++.-.. ....+++|++||+++|||..|++.+.+....
T Consensus 159 vH~vv~R~------~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 159 VHSVVGRN------ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred eeeeeecc------cCcceeecCCCccEEEEeccccceeEEeccc
Confidence 99998855 6788999999999999999999998776543
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.8e-10 Score=117.80 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=139.4
Q ss_pred cCceEEEEEcCC-CCEEEEEEcCCeEEEEecCC-----C--------eEEEEecCCCcceEEEEEecCCCEEEEEeC-CC
Q 001628 38 PSGCNKFAYDPL-QKILAAATKDGRIKLYGRHN-----N--------TQALLESSEAVSTKFLQFLENQGILLNVTS-TN 102 (1042)
Q Consensus 38 ~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~g-----~--------~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~-dg 102 (1042)
...|+|+||-|. +.-||+|+..| |.+|..+- + ...+++++...+|++|+|.+||..|++++- |.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 357999999995 46899999977 99997651 1 123466666789999999999999999985 56
Q ss_pred CEEEEEcCCCceeeee-ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEE
Q 001628 103 LIEVWDIDKKRLSHVH-VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVI 181 (1042)
Q Consensus 103 ~I~vWd~~~~~~~~~~-~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~ 181 (1042)
.|.|||.+++....+. .-.+.++-+.||||+.+|+.++-|+..++|+....- ...+ +.. ..+.|.
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w---t~er------w~l-----gsgrvq 284 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW---TKER------WIL-----GSGRVQ 284 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc---eecc------eec-----cCCcee
Confidence 7999999999855554 445779999999999999999999999999765542 1111 111 235899
Q ss_pred EEEEccCCCCCeEEEEECCCeEEEEeccC--CeeEEE-eCC-------cccc---cc---cccCCceeEEEEEccCCCEE
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRE--SKSIFS-MGG-------NVLQ---SV---YHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 182 ~v~~~p~~d~~~lls~~~dg~I~vWd~~~--~~~~~~-~~g-------~~~~---~~---~~~~~~I~~l~~~~~~g~~l 245 (1042)
...|+| +|.+|+.++....+ +|.+.- ...++. .++ ..++ .. ....+++.+++|. |.|.++
T Consensus 285 tacWsp--cGsfLLf~~sgsp~-lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD-psGeyL 360 (445)
T KOG2139|consen 285 TACWSP--CGSFLLFACSGSPR-LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD-PSGEYL 360 (445)
T ss_pred eeeecC--CCCEEEEEEcCCce-EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC-CCCCEE
Confidence 999999 88888777655444 554432 111111 000 0000 11 1125678899997 999999
Q ss_pred EEEecCCe
Q 001628 246 AVGYSNGE 253 (1042)
Q Consensus 246 ~sg~~dG~ 253 (1042)
++....+.
T Consensus 361 av~fKg~~ 368 (445)
T KOG2139|consen 361 AVIFKGQS 368 (445)
T ss_pred EEEEcCCc
Confidence 99876654
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.5e-10 Score=116.90 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=140.3
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc----
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---- 113 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---- 113 (1042)
...+.-+||++.-.-+|+++.|-.|++|+...+....+++.....|++|+|-|.+..-++++..+-|.+|..+...
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 3456779999988889999999999999988566667888888899999999976555555555779999865322
Q ss_pred -----------eeeeeecCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEE
Q 001628 114 -----------LSHVHVCKEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVI 181 (1042)
Q Consensus 114 -----------~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~ 181 (1042)
+..-.+| ..|+++.|.+|+..+++++- |..|.|||.+++.. ..++ +. ..+.++
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~--~pL~------~~------glgg~s 242 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK--IPLI------PK------GLGGFS 242 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc--cccc------cc------CCCcee
Confidence 1112223 57999999999999998875 67999999999863 1111 11 246888
Q ss_pred EEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS 250 (1042)
Q Consensus 182 ~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~ 250 (1042)
-+.|+| |+.+++.+.-|+..++|+........ .+....+.|...+|+ |+|+.|+-...
T Consensus 243 lLkwSP--dgd~lfaAt~davfrlw~e~q~wt~e--------rw~lgsgrvqtacWs-pcGsfLLf~~s 300 (445)
T KOG2139|consen 243 LLKWSP--DGDVLFAATCDAVFRLWQENQSWTKE--------RWILGSGRVQTACWS-PCGSFLLFACS 300 (445)
T ss_pred eEEEcC--CCCEEEEecccceeeeehhcccceec--------ceeccCCceeeeeec-CCCCEEEEEEc
Confidence 899999 99999999999999999665432111 123345589999998 99988665543
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.3e-11 Score=136.22 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=117.6
Q ss_pred CCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCE
Q 001628 59 DGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNY 135 (1042)
Q Consensus 59 dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~ 135 (1042)
+..|++||.+|.....+..+. ..+....|+|++++|+.++.+ ..|++||+.++....+....+...+++|+|++++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 368999999865444444433 578889999999999988754 3699999998875555545555667899999998
Q ss_pred EEEEe-CCCcEEEE--EccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCC
Q 001628 136 MLLGD-TAGKISVL--KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRES 211 (1042)
Q Consensus 136 l~sg~-~dG~I~vw--d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~ 211 (1042)
|+.+. .+|.+.+| |+.++. ...+ ..+...+.+..|+| |+..|+.++ .+|...||+++..
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~--~~~l-------------t~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGT--PSQL-------------TSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCC--eEee-------------ccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 88764 68876665 554443 2111 11234577899999 898777655 5788888887542
Q ss_pred ee-EEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 212 KS-IFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 212 ~~-~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.. ... ..+.. .+..|+ |+|..|+.++.++ +.+||+.+
T Consensus 325 ~~~~~~---------l~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 325 GGGASL---------VGGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred CCCeEE---------ecCCC--CCccCC-CCCCEEEEEcCCC-EEEEECCC
Confidence 21 111 11222 356787 9999998888765 55688876
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=132.09 Aligned_cols=221 Identities=13% Similarity=0.205 Sum_probs=157.8
Q ss_pred eecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-CeEEEEecCCCcceEEEEEec--CCCEEEEEeCCCCEEEEEcC
Q 001628 34 HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLE--NQGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~--~~~~Lvs~s~dg~I~vWd~~ 110 (1042)
.-||.+.|.|++|+.+|.+||+|+.|-++.|||.-. +....+...+..-|-++.|.| +.+.+++|..|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 369999999999999999999999999999999762 445555555557788899999 56689999999999999998
Q ss_pred CC---------c--eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccc-cccCccccCC
Q 001628 111 KK---------R--LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLS-ASHGNEVSGD 177 (1042)
Q Consensus 111 ~~---------~--~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~-~~~~~~~~~~ 177 (1042)
.. . ......|..+|.-++..|++ +.+.++++||+|+-||+.....+..... .+.. .. ....-
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~--~~~~l~n---y~~~l 200 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED--CPSILVN---YNPQL 200 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc--ccHHHHH---hchhh
Confidence 51 1 34456688999999999999 7888999999999999987432111000 0000 00 00011
Q ss_pred CCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee------------------EEEeC-Ccccccccc-cCCc---eeE
Q 001628 178 PAVINILPQPTAESKRILIIFRDGLISLWDIRESKS------------------IFSMG-GNVLQSVYH-ETKQ---VTS 234 (1042)
Q Consensus 178 ~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~------------------~~~~~-g~~~~~~~~-~~~~---I~~ 234 (1042)
-...++..+|. +..+|++|+.|-..++||.+.... +..+- +. +....+ .... ++-
T Consensus 201 ielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-lkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-LKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-ccCcccccccceeeeEE
Confidence 36678999996 899999999999999999532111 11110 11 111111 1223 445
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 235 ACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 235 l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
++|+ |+|..|++....-.|+++|+..+
T Consensus 279 vtfn-pNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 279 VTFN-PNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred EEEC-CCCcEEEEeeCCeEEEEEeecCC
Confidence 6777 99998888888789999999875
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-09 Score=119.21 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=125.6
Q ss_pred ecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc----------------eeeeeecCCCeEEEEEeCCCCEEEEE
Q 001628 76 ESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR----------------LSHVHVCKEEITSFTIMQHSNYMLLG 139 (1042)
Q Consensus 76 ~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~----------------~~~~~~h~~~It~v~~sp~~~~l~sg 139 (1042)
..+......++.|..+.+++++|+.||.++|-.+.+.. -.++.+|.+.|.-+.|....+.|-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 34566778889999999999999999999999876532 13567899999999999999999999
Q ss_pred eCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCC
Q 001628 140 DTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGG 219 (1042)
Q Consensus 140 ~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g 219 (1042)
+.+|.|.||-+-.+...- .+ + ....+.-|.+++|+. ||..+.+++.||.|.|=.++.++.- |
T Consensus 90 Dt~GlIiVWmlykgsW~E-EM---i--------NnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNRIw----g 151 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCE-EM---I--------NNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNRIW----G 151 (1189)
T ss_pred CCCceEEEEeeecccHHH-HH---h--------hCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccceec----c
Confidence 999999999987765210 01 0 122356899999998 9999999999999988777765421 1
Q ss_pred cccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 220 NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 220 ~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+ .........+.|+ +|...++.+-.+|.+.++|...
T Consensus 152 K-----eLkg~~l~hv~ws-~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 152 K-----ELKGQLLAHVLWS-EDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred h-----hcchheccceeec-ccHHHHHhhhcCCcEEEecccc
Confidence 2 1122334467898 8988888888889999998765
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.31 E-value=2.1e-09 Score=119.86 Aligned_cols=195 Identities=13% Similarity=0.180 Sum_probs=122.7
Q ss_pred CCEEEEEE-cCCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEE
Q 001628 50 QKILAAAT-KDGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSF 127 (1042)
Q Consensus 50 ~~~LA~gs-~dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v 127 (1042)
+.++++.. .+|.|.+.|... ++...+.... .+-..+.|+||++++.+++.||.|.++|+.++++...........++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 34555555 469999999872 4555555443 22334789999999999999999999999999955444555667899
Q ss_pred EEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE-ECCCeEEE
Q 001628 128 TIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII-FRDGLISL 205 (1042)
Q Consensus 128 ~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~-~~dg~I~v 205 (1042)
+++++|++++++. ..+.+.++|..+.+. . ..+|...... ......+.++..+| ....++.. -+.+.|.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v---~~I~~~~~~~--~~~~~Rv~aIv~s~--~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEP--V---KTIPTGGMPV--DGPESRVAAIVASP--GRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--E--E---EEEE--EE-T--TTS---EEEEEE-S--SSSEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccc--e---eecccccccc--cccCCCceeEEecC--CCCEEEEEEccCCeEEE
Confidence 9999999999886 589999999988662 2 1222111100 01345788888888 55544444 45588877
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE-ecCCeEEEEeCCCc
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG-YSNGEILIWGVPSI 262 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg-~~dG~I~iWd~~~~ 262 (1042)
-|....+.+... ............|. |++++++++ ..+..|.++|..++
T Consensus 155 Vdy~d~~~~~~~-------~i~~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 155 VDYSDPKNLKVT-------TIKVGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EETTTSSCEEEE-------EEE--TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEecccccccee-------eecccccccccccC-cccceeeecccccceeEEEeeccc
Confidence 787765432210 12223455567887 999987665 56778999998874
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.1e-10 Score=124.03 Aligned_cols=218 Identities=15% Similarity=0.205 Sum_probs=154.6
Q ss_pred eeeeecccCceEEEEEcCCCCE-EEEEEcCCeEEEEecCCCeEEEEecCCCcce--------------------------
Q 001628 31 LVFHYGFPSGCNKFAYDPLQKI-LAAATKDGRIKLYGRHNNTQALLESSEAVST-------------------------- 83 (1042)
Q Consensus 31 ~~~~~G~~~~v~~la~sp~~~~-LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v-------------------------- 83 (1042)
.+..+++|..-+.+..+|||++ ||+|+.-..|++||.. ++...|..|..+.+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 4566899999999999999985 7889999999999987 44444433322211
Q ss_pred --------------EEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001628 84 --------------KFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVL 148 (1042)
Q Consensus 84 --------------~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vw 148 (1042)
..|+++.-.--|.+++....|+=.|++.|+ +..+....+.++++.+++...+|++|+.+|.|-.|
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 112222222236677777889999999998 55555556899999999999999999999999999
Q ss_pred EccCCcc-ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccc
Q 001628 149 KLDQESS-QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYH 227 (1042)
Q Consensus 149 d~~~~~~-~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~ 227 (1042)
|...... ........++.... ......|+++.|+- +|-.+++|+.+|.+.|||+++.+++... ..+
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg----~~~~~svTal~F~d--~gL~~aVGts~G~v~iyDLRa~~pl~~k-------dh~ 269 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPG----GDAAPSVTALKFRD--DGLHVAVGTSTGSVLIYDLRASKPLLVK-------DHG 269 (703)
T ss_pred cchhhhhheeeecccccCCCcc----ccccCcceEEEecC--CceeEEeeccCCcEEEEEcccCCceeec-------ccC
Confidence 9887652 11111111111111 11235699999996 7999999999999999999998877653 244
Q ss_pred cCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 228 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 228 ~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
..-+|..+.|...++.--+.......++|||-.++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccC
Confidence 56789999998333333333444568899998876
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.6e-10 Score=133.49 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=135.6
Q ss_pred cccCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEe-CCCCEEE--EEc
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVT-STNLIEV--WDI 109 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s-~dg~I~v--Wd~ 109 (1042)
++...+...+|+|+++.||.++.+ ..|++|+..+.....+.... .....++|+||++.|+.++ .+|.+.| ||+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 445678999999999999998754 46999998743222222111 2233589999999888765 5776555 577
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
.++....+..+...+++..|+|++++|+..+ .+|...+|+++........ + .+.. .+..|+|
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l----------~~~~--~~~~~Sp- 342 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----V----------GGRG--YSAQISA- 342 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----e----------cCCC--CCccCCC-
Confidence 7777777777788889999999999776554 6788889887653311111 1 0111 3467999
Q ss_pred CCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 189 AESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
++.+|+.++.++.+ +||+.+++...... . ....+..|+ |+|..|+.++.+|.+.+|.+.
T Consensus 343 -DG~~ia~~~~~~i~-~~Dl~~g~~~~lt~--------~--~~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 343 -DGKTLVMINGDNVV-KQDLTSGSTEVLSS--------T--FLDESPSIS-PNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CCCEEEEEcCCCEE-EEECCCCCeEEecC--------C--CCCCCceEC-CCCCEEEEEEcCCCceEEEEE
Confidence 89999888876655 69998876433211 1 122456797 999999999999998888764
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=2.8e-08 Score=110.94 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=93.3
Q ss_pred EEEEeCCCCEEEEEcCCCceeeeeecCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 95 LLNVTSTNLIEVWDIDKKRLSHVHVCKEEI-TSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 95 Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~I-t~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
+++-..+|.|.|.|..+.++.......+.+ ..+.|+||++++++.+.||.|.++|+.+.+. .....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~------------ 75 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIK------------ 75 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEe------------
Confidence 456667899999999998854444333344 4477999999999999999999999999872 11111
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec-C
Q 001628 174 VSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS-N 251 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~-d 251 (1042)
......+++++| ||.+++++. ..+.+.++|..+.+.+..+....... ......+.++..+ +....++..-. .
T Consensus 76 --~G~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-~~~~~Rv~aIv~s-~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 76 --VGGNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-DGPESRVAAIVAS-PGRPEFVVNLKDT 149 (369)
T ss_dssp ---SSEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-TTS---EEEEEE--SSSSEEEEEETTT
T ss_pred --cCCCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccc-cccCCCceeEEec-CCCCEEEEEEccC
Confidence 123567899999 999988775 78999999999988777642111000 1144567777666 66665555444 4
Q ss_pred CeEEEEeCCC
Q 001628 252 GEILIWGVPS 261 (1042)
Q Consensus 252 G~I~iWd~~~ 261 (1042)
+.|.+-|...
T Consensus 150 ~~I~vVdy~d 159 (369)
T PF02239_consen 150 GEIWVVDYSD 159 (369)
T ss_dssp TEEEEEETTT
T ss_pred CeEEEEEecc
Confidence 7776666654
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=3.1e-10 Score=114.61 Aligned_cols=249 Identities=16% Similarity=0.198 Sum_probs=173.9
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEE
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILI 256 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~i 256 (1042)
..+|+|.+|++ |...++++.++..|.||.......-. ..+++..|...|+.++|+ |..+.|++++.|..-++
T Consensus 10 ~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~-----~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 10 LEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWE-----PAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYV 81 (361)
T ss_pred cCceeeeeecC--CCceEEeccCCceEEEEEecCCCCce-----eceehhhhCcceeEEeec-CCCCceeEccCCCCccc
Confidence 36999999999 99999999999999999988755211 245668899999999998 99999999999999999
Q ss_pred EeCCCccccccccCCccccccccccCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCCccEEEEeecccccceeEEE
Q 001628 257 WGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKL 336 (1042)
Q Consensus 257 Wd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~ 336 (1042)
|...++. .|..
T Consensus 82 w~~~~~~-------------------------------~Wkp-------------------------------------- 92 (361)
T KOG1523|consen 82 WTQPSGG-------------------------------TWKP-------------------------------------- 92 (361)
T ss_pred cccCCCC-------------------------------eecc--------------------------------------
Confidence 9885421 1211
Q ss_pred eeCCCCCeeeEEEccCCCCCCCCCccEEEEEecCCceEEeecccceeeeccCCCCCCCCCCccceeccCCCCcceeEEEE
Q 001628 337 ALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKL 416 (1042)
Q Consensus 337 ~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~l~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~~~h~~~vt~~~~ 416 (1042)
.+ ++--++...+|+.
T Consensus 93 -----------------------------------tl-----------------------------vLlRiNrAAt~V~- 107 (361)
T KOG1523|consen 93 -----------------------------------TL-----------------------------VLLRINRAATCVK- 107 (361)
T ss_pred -----------------------------------ce-----------------------------eEEEeccceeeEe-
Confidence 00 0012344566666
Q ss_pred eecCccccccchhHHHhhhhcCCCCCCCCcCCCCCCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccC-
Q 001628 417 ITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDF- 495 (1042)
Q Consensus 417 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~- 495 (1042)
++|.++.+++|+.-..|.+|-++.. ++|
T Consensus 108 --------------------------------------WsP~enkFAVgSgar~isVcy~E~E-------------NdWW 136 (361)
T KOG1523|consen 108 --------------------------------------WSPKENKFAVGSGARLISVCYYEQE-------------NDWW 136 (361)
T ss_pred --------------------------------------ecCcCceEEeccCccEEEEEEEecc-------------ccee
Confidence 4455668999999999999987754 222
Q ss_pred ------CCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceee-eEEEeecCCCeEEE
Q 001628 496 ------SLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIH-SVKVMKINGSIISL 568 (1042)
Q Consensus 496 ------~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~V~~l 568 (1042)
..+...|++++|+|++-+||+|+.|+.+|||..--......... ..|....++=+ ...+....+.|..+
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap----~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP----TPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCC----CCCccCCcHHHHHHhhccCCCceeee
Confidence 45668899999999999999999999999998643222110000 00000000000 01222345889999
Q ss_pred EEecCCcEEEEEecCCcEEEEeccCCe--EE-EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCC
Q 001628 569 NMNRNSQHLAVGSDQGYVYLLDTEGPT--VL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD 634 (1042)
Q Consensus 569 ~~spdg~~La~gs~dg~V~vwD~~~~~--~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~D 634 (1042)
.|+|+|..||=.+.|.+|.+-|..++. +. .... .-+..++.|.. ...++.++.|
T Consensus 213 ~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~-----~lP~ls~~~is-------e~~vv~ag~~ 269 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA-----QLPLLSVSWIS-------ENSVVAAGYD 269 (361)
T ss_pred EeCCCCCEeeEecCCCceEEeecCCCchhccchhhc-----cCCceeeEeec-------CCceeecCCC
Confidence 999999999999999999999998875 32 1111 13788888883 4455555555
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.27 E-value=3.3e-11 Score=135.09 Aligned_cols=118 Identities=11% Similarity=0.273 Sum_probs=99.8
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
+..+.+|...|.|+.|...+.++++|+.|..|+||..++..+ +.. ..+|.+.++.++.+. +..+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-lAs-------------~rGhs~ditdlavs~--~n~~ 246 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-LAS-------------CRGHSGDITDLAVSS--NNTM 246 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-hcc-------------CCCCccccchhccch--hhhh
Confidence 446667889999999999999999999999999999877652 111 245688999999997 7888
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
+++++.|..|++|-+..+.+ +..+.+|.+.|++++|+ |-. +.+.||++++||.+
T Consensus 247 iaaaS~D~vIrvWrl~~~~p--------vsvLrghtgavtaiafs-P~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAP--------VSVLRGHTGAVTAIAFS-PRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hhhcccCceEEEEecCCCch--------HHHHhccccceeeeccC-ccc----cCCCCCceEecccc
Confidence 99999999999999999654 44468999999999998 654 66899999999987
No 223
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.1e-08 Score=114.46 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=113.2
Q ss_pred eEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCC------------CEEEEEeCCCcEEEEE
Q 001628 83 TKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHS------------NYMLLGDTAGKISVLK 149 (1042)
Q Consensus 83 v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~------------~~l~sg~~dG~I~vwd 149 (1042)
-.++.|+|.| |++.+..+.|.|-|..+-+ +..+..|+..|+.+.|.|.. -.|++++-.|.|.+||
T Consensus 18 ~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4558899999 7777777889999988877 77888899999999998632 3678899999999999
Q ss_pred ccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC-CC-CeEEEEECCCeEEEEeccCCeeEEEeCCcccccccc
Q 001628 150 LDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA-ES-KRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYH 227 (1042)
Q Consensus 150 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~-d~-~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~ 227 (1042)
+....... . ...+..++..++|-|.. +. ..|+......++.+|+..+|+....+ ..
T Consensus 96 ~~~~s~~~-----~---------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~y 153 (1062)
T KOG1912|consen 96 FVLASVIN-----W---------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DY 153 (1062)
T ss_pred ehhhhhhh-----h---------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------cc
Confidence 88764200 0 11234577888887632 33 56788888999999999998866543 22
Q ss_pred cCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 228 ETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 228 ~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
......|+.+.+-|...|..-+..|.+.+.+...
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 2345555777644677788888888888877643
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1e-10 Score=124.10 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=126.5
Q ss_pred EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--eeeeeecCCCeEEEEEeCCC--CEEEEEeCCCcEEEEE
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LSHVHVCKEEITSFTIMQHS--NYMLLGDTAGKISVLK 149 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~~~~~h~~~It~v~~sp~~--~~l~sg~~dG~I~vwd 149 (1042)
.+..|. .-|..|.|...|..|+++++|..|.+||+..+. +....+|...|..-.|.|.. .-+++.+.||.|++=.
T Consensus 137 kL~~H~-GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHK-GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCC-CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344444 667789999999999999999999999999887 44556798888888888865 6789999999999887
Q ss_pred ccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccC
Q 001628 150 LDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHET 229 (1042)
Q Consensus 150 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~ 229 (1042)
+..... ..-+. ....|.++|.-++.-|. ....+++++.|+.+.-.|++++.+...+. ....+.
T Consensus 216 i~~t~~--~e~t~---------rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----cr~~~~ 278 (559)
T KOG1334|consen 216 ILETGY--VENTK---------RLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----CREADE 278 (559)
T ss_pred eccccc--eecce---------ecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceee-----eeccCC
Confidence 665431 11010 13457889999999995 67889999999999999999876443321 112233
Q ss_pred C---ceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 230 K---QVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 230 ~---~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
. ...+++..+.+-..+++|+.|--+++||.+.
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence 3 5666777633445889999998888888775
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=2.2e-10 Score=122.96 Aligned_cols=167 Identities=14% Similarity=0.253 Sum_probs=122.2
Q ss_pred CCCCEEEEEEcCCeEEEEecCC-CeEEEEe---cCCCcceEEEEEecCCC-EEEEEeCCCCEEEEEcCCC----------
Q 001628 48 PLQKILAAATKDGRIKLYGRHN-NTQALLE---SSEAVSTKFLQFLENQG-ILLNVTSTNLIEVWDIDKK---------- 112 (1042)
Q Consensus 48 p~~~~LA~gs~dg~I~iw~~~g-~~~~~~~---~~~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~~~---------- 112 (1042)
|.+--|.+|-..|.|.+.+..- .+..++. .-.+..|+++.|.|.+. .++.+-.+|.++++|..--
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4556688888889999887651 1111111 22347899999999654 4555667899999975310
Q ss_pred ----c---------------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 113 ----R---------------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 113 ----~---------------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
. +......++.|..++|+||+++||+.++||.++|+|+++..+ .... ..
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL--lg~m------kS---- 330 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL--LGVM------KS---- 330 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH--HHHH------Hh----
Confidence 0 111112346789999999999999999999999999999763 1110 01
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA 238 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~ 238 (1042)
--+...|++|+| ||.+|++|++|-.|.||.+..++++.+- .+|...|..++|.
T Consensus 331 --YFGGLLCvcWSP--DGKyIvtGGEDDLVtVwSf~erRVVARG--------qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 331 --YFGGLLCVCWSP--DGKYIVTGGEDDLVTVWSFEERRVVARG--------QGHKSWVSVVAFD 383 (636)
T ss_pred --hccceEEEEEcC--CccEEEecCCcceEEEEEeccceEEEec--------cccccceeeEeec
Confidence 126899999999 9999999999999999999999988763 6778888888775
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.3e-09 Score=122.12 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=117.1
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC---CCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS---TNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~---dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
.|.+||.+|.....+... ...+...+|+|||+.|+..+. +..|.+||+.+++...+...++.+...+|+|++++|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 699999886443334333 357888999999999987653 3579999999988666655666677889999999887
Q ss_pred EE-eCCC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC-Ce--EEEEeccCC
Q 001628 138 LG-DTAG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD-GL--ISLWDIRES 211 (1042)
Q Consensus 138 sg-~~dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d-g~--I~vWd~~~~ 211 (1042)
.. +.+| .|++||++++.. ..+. .+...+....|+| |+..|+..+.+ +. |.++|+.++
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~--~~lt-------------~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI--RQVT-------------DGRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE--EEcc-------------CCCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCCC
Confidence 65 4455 588899887652 2111 1123567789999 89988777754 44 444566665
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC---CeEEEEeCCC
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN---GEILIWGVPS 261 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d---G~I~iWd~~~ 261 (1042)
..... ..........+|+ |||..|+..+.+ ..|.+||+.+
T Consensus 322 ~~~~l---------t~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 322 APQRI---------TWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CeEEe---------ecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCC
Confidence 43221 2223345567897 999998887654 2466677654
No 227
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=9.2e-07 Score=109.53 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=134.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEE----ecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCC---
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLY----GRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDK--- 111 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw----~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~--- 111 (1042)
..|.++.|-++..-|.++..+|.|.++ +.+ ....-..+.-...|.+++|+||+..|+.+..+++|.+-+-+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 679999999999999999999999999 555 333333444457899999999999999999999887764210
Q ss_pred ----------Cc--e---------eeeee------------------------cCCCeEEEEEeCCCCEEEEEeC---C-
Q 001628 112 ----------KR--L---------SHVHV------------------------CKEEITSFTIMQHSNYMLLGDT---A- 142 (1042)
Q Consensus 112 ----------~~--~---------~~~~~------------------------h~~~It~v~~sp~~~~l~sg~~---d- 142 (1042)
+. . ..+++ +...-..++|-.||.|+|+.+- .
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 00 0 00000 2234567889999999998774 3
Q ss_pred --CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC---CCeEEEEeccCCe-eEEE
Q 001628 143 --GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR---DGLISLWDIRESK-SIFS 216 (1042)
Q Consensus 143 --G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~---dg~I~vWd~~~~~-~~~~ 216 (1042)
..++||+-+.. +....-. ..+--.+++|.| .|+.|++... .-.|.+|.-+.-+ ..+.
T Consensus 235 ~~R~iRVy~ReG~---L~stSE~------------v~gLe~~l~WrP--sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~ 297 (928)
T PF04762_consen 235 SRRVIRVYSREGE---LQSTSEP------------VDGLEGALSWRP--SGNLIASSQRLPDRHDVVFFERNGLRHGEFT 297 (928)
T ss_pred ceeEEEEECCCce---EEecccc------------CCCccCCccCCC--CCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence 47888886632 2111101 122334589999 8998888874 3456667655422 0111
Q ss_pred eCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 217 MGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 217 ~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
-.+......|..+.|+ +|+..|+....|. |.+|...+
T Consensus 298 ------l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 298 ------LRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ------cCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeC
Confidence 0112456789999998 8999999988765 99998876
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.7e-09 Score=116.29 Aligned_cols=184 Identities=16% Similarity=0.120 Sum_probs=130.9
Q ss_pred eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCcee--eeeecCCCeEEEEEeCCC--CEEEEEeCCCcEE
Q 001628 71 TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLS--HVHVCKEEITSFTIMQHS--NYMLLGDTAGKIS 146 (1042)
Q Consensus 71 ~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~--~~~~h~~~It~v~~sp~~--~~l~sg~~dG~I~ 146 (1042)
.+..+.+|. .-|.+|.|+.+|.+|++|++|-.+.|||.-..++. -..+|...|.|+.|-|.. ..+++|..|..|+
T Consensus 42 lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHT-GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhcccc-ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 455677777 66889999999999999999999999999877633 336799999999999865 7889999999999
Q ss_pred EEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeC--Cccccc
Q 001628 147 VLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMG--GNVLQS 224 (1042)
Q Consensus 147 vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~--g~~~~~ 224 (1042)
++|++.....-..-....+. .. -..|...|-.++..|. .++.+.++++||+++-+|+++...-..-+ +..+..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~-~~---~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETT-RC---WSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred EEecccccccccccCccchh-hh---hhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 99998633100000000000 00 1234568888999994 45899999999999999999743211110 011112
Q ss_pred ccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 225 VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 225 ~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
....--...|+..++.+..+|++|+.|--.++||.+
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 222334567788885567789999999999999954
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.6e-09 Score=112.59 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=120.7
Q ss_pred cEEEEEeCC--CcEEEEeCCCCceeeeeeccccccccCCCCC--CCeEEEEEeCC--CCEEEEEeccceEEEEEeccCCc
Q 001628 460 NLFITGHSD--GAINFWDVSCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGT--SRVLVSGDQSGMVRIFKLKYEPH 533 (1042)
Q Consensus 460 ~~l~tg~~D--g~IriWd~~~~~~~~l~~l~~~~~~~~~~~~--~~V~~l~fsp~--~~~Lasg~~dG~V~vw~~~~~~~ 533 (1042)
.++++|+.. ..+++||+... .++++-+.- .+++-+-. ..++++.|-+. ...||+++.-+.||+||......
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~--~qiw~aKNv-pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQS--KQIWSAKNV-PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred ceEecCchhcccceeeeecccc--eeeeeccCC-CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 477788888 78999999875 455533211 11111112 45678889888 89999999999999999864322
Q ss_pred ccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEE
Q 001628 534 AIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSL 613 (1042)
Q Consensus 534 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 613 (1042)
|...+.....+|+++...|+++++.+|..-|.+..||++++.++ ++...+..+.|.+|
T Consensus 239 --------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 239 --------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSI 296 (412)
T ss_pred --------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceE
Confidence 11444445688999999999999999999999999999999887 22222345699999
Q ss_pred EEEeeecCCCCceEEEEEeCCceEEEEECCCCcee
Q 001628 614 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 648 (1042)
Q Consensus 614 ~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i 648 (1042)
...| ...+|++++-|..|+|+|+.|-+++
T Consensus 297 h~hp------~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 297 HCHP------THPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EEcC------CCceEEeeccceeEEEeecccchhh
Confidence 9998 8899999999999999999986655
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.21 E-value=4.2e-11 Score=126.21 Aligned_cols=194 Identities=14% Similarity=0.214 Sum_probs=162.2
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeee
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHV 119 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~ 119 (1042)
....+.|+.+|+.|+.|++-|.|-.+|.. .....++..-...|..+.|..+.++++++ ..+.++|||-..-++.++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~-t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWV-TKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecc-cceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhh
Confidence 36789999999999999999999999988 55555665555678889999998666654 66899999988877888877
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC
Q 001628 120 CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 120 h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~ 199 (1042)
|. .|..+.|.|..-+|++++..|.++.-|+.++++ +.. .....+.+..+.-+| -...+-+|..
T Consensus 209 ~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~------------~~t~~G~~~vm~qNP--~NaVih~Ghs 271 (545)
T KOG1272|consen 209 HI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL--VAS------------IRTGAGRTDVMKQNP--YNAVIHLGHS 271 (545)
T ss_pred cC-chhhhcccchhheeeecccCCceEEEeechhhh--hHH------------HHccCCccchhhcCC--ccceEEEcCC
Confidence 65 589999999999999999999999999999873 111 112346788889999 6778999999
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+|+|.+|......++. ....|.++|.++++. ++|.+++|.+.|..++|||++.
T Consensus 272 nGtVSlWSP~skePLv--------KiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CceEEecCCCCcchHH--------HHHhcCCCcceEEEC-CCCcEEeecccccceeEeeecc
Confidence 9999999998866433 236789999999998 9999999999999999999986
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=1.3e-10 Score=122.53 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=124.1
Q ss_pred cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccc
Q 001628 77 SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQ 156 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~ 156 (1042)
.+.-.|.. +.|+.+|++|+.++..|.|--+|..++.+..-......|..+.|....+++|++- ...++|||-..-++
T Consensus 127 l~eFGPY~-~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl- 203 (545)
T KOG1272|consen 127 LPEFGPYH-LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL- 203 (545)
T ss_pred ccccCCee-eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE-
Confidence 33435555 9999999999999999999999999999776666777899999999888888775 45789998776552
Q ss_pred eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEE
Q 001628 157 IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSAC 236 (1042)
Q Consensus 157 ~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~ 236 (1042)
..+. ....|..+.|-| ..-.|++++..|.+..-|+.+|+.+.. +....+.+..++
T Consensus 204 -HClk--------------~~~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--------~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 204 -HCLK--------------RHIRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--------IRTGAGRTDVMK 258 (545)
T ss_pred -eehh--------------hcCchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--------HHccCCccchhh
Confidence 1111 135788899999 667778888999999999999765443 345567777888
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCC
Q 001628 237 WACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
-+ |-...+-+|...|+|.+|....
T Consensus 259 qN-P~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 259 QN-PYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred cC-CccceEEEcCCCceEEecCCCC
Confidence 77 8889999999999999998775
No 232
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=2.7e-08 Score=106.81 Aligned_cols=185 Identities=12% Similarity=0.185 Sum_probs=121.0
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCC--------------
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTN-------------- 102 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg-------------- 102 (1042)
..-++....|||.|.+|++.+..| |.+|+.. ..-.+....+ ..|..+.|+|++++|++-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~-~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGP-SKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEcccc-chhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 445688899999999999999877 9999987 3223333333 4588899999999999876543
Q ss_pred -CEEEEEcCCCce-eeeeecCCC--eE-EEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCC
Q 001628 103 -LIEVWDIDKKRL-SHVHVCKEE--IT-SFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGD 177 (1042)
Q Consensus 103 -~I~vWd~~~~~~-~~~~~h~~~--It-~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~ 177 (1042)
.+.|||+.++.+ ..+.....+ .+ -+.|+-+..|++=- -...++|+++ +.. +...+.. ....
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n--~~~~p~~----------~lr~ 173 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN--IEEHPFK----------NLRP 173 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc--cccCchh----------hccc
Confidence 499999999984 444444444 55 67788888876633 2346899997 433 2222211 0113
Q ss_pred CCEEEEEEccCCCCCeEEEE-----ECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEE
Q 001628 178 PAVINILPQPTAESKRILII-----FRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAV 247 (1042)
Q Consensus 178 ~~V~~v~~~p~~d~~~lls~-----~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~s 247 (1042)
..|...+|+|..++..|+.- ...+.+++|.+..++.+... ..-...=..+-|. +.|.++++
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk--------~lfk~~~~qLkW~-~~g~~ll~ 239 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK--------NLFKVSGVQLKWQ-VLGKYLLV 239 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee--------eeEeecccEEEEe-cCCceEEE
Confidence 57788889994334433332 35778899998876654431 2223334467787 77777654
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.17 E-value=3.4e-09 Score=107.20 Aligned_cols=153 Identities=10% Similarity=0.234 Sum_probs=111.0
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEec--CCCeEEEEecCCCcceEEEEEecCCCEEEEEe--CCCCEEEE
Q 001628 42 NKFAYDPLQKILAAATK----------DGRIKLYGR--HNNTQALLESSEAVSTKFLQFLENQGILLNVT--STNLIEVW 107 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~----------dg~I~iw~~--~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s--~dg~I~vW 107 (1042)
..+.|+|.|..|++-.. -|...||-. .+.....+......+|.+++|+|++..++++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988777654 144555544 33444555555556799999999999876553 56789999
Q ss_pred EcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT---AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~---dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
|++...+..+. ...+..+.|+|+|++|++|+. .|.|.+||+...+. ... .....++.+.
T Consensus 89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~--------------~~~~~~t~~~ 150 (194)
T PF08662_consen 89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--IST--------------FEHSDATDVE 150 (194)
T ss_pred cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eec--------------cccCcEEEEE
Confidence 99855455543 467789999999999999874 47799999996541 111 0124578999
Q ss_pred EccCCCCCeEEEEEC------CCeEEEEeccCCeeEE
Q 001628 185 PQPTAESKRILIIFR------DGLISLWDIRESKSIF 215 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~------dg~I~vWd~~~~~~~~ 215 (1042)
|+| +|.+++++.. |+.++||+.. |+.+.
T Consensus 151 WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 151 WSP--DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EcC--CCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 999 9999999874 7888999986 44443
No 234
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=4.5e-09 Score=108.50 Aligned_cols=192 Identities=10% Similarity=0.181 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCEEEEEEcC--CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeee
Q 001628 41 CNKFAYDPLQKILAAATKD--GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHV 117 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~d--g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~ 117 (1042)
|.-+-|+. .+||+.+.+ ..+++++.. +...+....-..+|.++.+..+. |+++-.+ .|+|+|+.+.+ +.++
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~K-k~~~ICe~~fpt~IL~VrmNr~R--LvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFK-KKTTICEIFFPTSILAVRMNRKR--LVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcc-cCceEEEEecCCceEEEEEccce--EEEEEcc-cEEEEecccceeehhh
Confidence 44445554 467776665 347777766 33333333334567777777664 6665554 49999999988 3444
Q ss_pred ee---cCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 118 HV---CKEEITSFTIMQHSNYMLLG--DTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 118 ~~---h~~~It~v~~sp~~~~l~sg--~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
.. ++..+.++.++..+.||+.= ...|.|.+||+.+-+ .. .. ...|++++.+++|+| +|.
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--~v---~~---------I~aH~~~lAalafs~--~G~ 186 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--PV---NT---------INAHKGPLAALAFSP--DGT 186 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce--ee---eE---------EEecCCceeEEEECC--CCC
Confidence 33 44567777777777898853 357999999998754 11 11 134789999999999 999
Q ss_pred eEEEEECCCeE-EEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 193 RILIIFRDGLI-SLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 193 ~lls~~~dg~I-~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.|+++++.|+| ||+.+.+|+.++.|... .....|.+++|+ +++.+|++.+..++|.++.+..
T Consensus 187 llATASeKGTVIRVf~v~~G~kl~eFRRG------~~~~~IySL~Fs-~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQKLYEFRRG------TYPVSIYSLSFS-PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEeccCceEEEEEEcCCccEeeeeeCC------ceeeEEEEEEEC-CCCCeEEEecCCCeEEEEEecc
Confidence 99999999975 89999999988776311 114678999998 9999999999999999999986
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=6.3e-08 Score=107.26 Aligned_cols=209 Identities=18% Similarity=0.223 Sum_probs=150.0
Q ss_pred eeecccCc--eEEEEEcCCCCEEEEEEcCCeEEEEecC---------C-------CeEEEEecCCCcceEEEEEecCCCE
Q 001628 33 FHYGFPSG--CNKFAYDPLQKILAAATKDGRIKLYGRH---------N-------NTQALLESSEAVSTKFLQFLENQGI 94 (1042)
Q Consensus 33 ~~~G~~~~--v~~la~sp~~~~LA~gs~dg~I~iw~~~---------g-------~~~~~~~~~~~~~v~~l~fs~~~~~ 94 (1042)
...|+|.. ..|++|...+.+||+|+.||.++|...+ | ..-.++.+|. ..|.-+.|..+.+.
T Consensus 7 kki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 7 KKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-ASVMVVTWNENNQK 85 (1189)
T ss_pred cccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-ceEEEEEecccccc
Confidence 34567754 5899999999999999999999998654 1 0123455665 67888999999999
Q ss_pred EEEEeCCCCEEEEEcCCCc-eee--eeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 95 LLNVTSTNLIEVWDIDKKR-LSH--VHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 95 Lvs~s~dg~I~vWd~~~~~-~~~--~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
|-+...+|.|.||-+-.+. ... -....+.|.+++|..+|..+...-+||.|.|=.++.... - |
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI--w------------g 151 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI--W------------G 151 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee--c------------c
Confidence 9999999999999988876 222 223446789999999999999999999999988887652 0 0
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee-----EEEeCCcccccccccCCceeEEEEE-------c
Q 001628 172 NEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS-----IFSMGGNVLQSVYHETKQVTSACWA-------C 239 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~-----~~~~~g~~~~~~~~~~~~I~~l~~~-------~ 239 (1042)
.+. ...-..++.|+| |...++.+-.+|.+.++|...+-. .+.. +....+......|..++|. .
T Consensus 152 KeL-kg~~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~V--n~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 152 KEL-KGQLLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEV--NGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred hhc-chheccceeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEE--eeeeeecCCCccccceeeccCccccCC
Confidence 000 012345789999 888888899999999999865310 0000 0011122233446677775 3
Q ss_pred cCCCEEEEEecCCeEEEEeCCC
Q 001628 240 PIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 240 ~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
|+...|++++.+|.+.+-.-..
T Consensus 227 pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcC
Confidence 6888999999999988865443
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=5.4e-09 Score=120.38 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=132.5
Q ss_pred ccCceEEEEEcCCCCEEEEEEc---CCeEEEEecCCC-eEEEEecCCCcceEEEEEecCCCEEEEE-eCCC--CEEEEEc
Q 001628 37 FPSGCNKFAYDPLQKILAAATK---DGRIKLYGRHNN-TQALLESSEAVSTKFLQFLENQGILLNV-TSTN--LIEVWDI 109 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~---dg~I~iw~~~g~-~~~~~~~~~~~~v~~l~fs~~~~~Lvs~-s~dg--~I~vWd~ 109 (1042)
.+..+...+|+|+|+.||..+. +..|++|+..++ ...+...+ ..+..+.|+|||+.|+.. +.++ .|++||+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 3557889999999999998653 357899998743 33332222 223458999999988865 3444 4999999
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeC-CCcEEEE--EccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AGKISVL--KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG~I~vw--d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
.++.+..+..+...+....|+|++++|+..+. +|...+| ++.++. ...+. . .........|+
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt----~---------~~~~~~~~~~S 339 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRIT----W---------EGSQNQDADVS 339 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEee----c---------CCCCccCEEEC
Confidence 99887777666677889999999998876665 4554555 555543 21111 0 11234568899
Q ss_pred cCCCCCeEEEEECC---CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCe---EEEEeCC
Q 001628 187 PTAESKRILIIFRD---GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGE---ILIWGVP 260 (1042)
Q Consensus 187 p~~d~~~lls~~~d---g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~---I~iWd~~ 260 (1042)
| |+.+|+....+ ..|.+||+.++...... . ........|+ |||..|+.++.++. +.+|++.
T Consensus 340 p--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---------~-~~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 340 S--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT---------D-TFLDETPSIA-PNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred C--CCCEEEEEEccCCCceEEEEECCCCCeEEeC---------C-CCCCCCceEC-CCCCEEEEEEcCCCceEEEEEECC
Confidence 9 89988876643 35888999887633221 1 1122356798 99999999998865 6677775
Q ss_pred C
Q 001628 261 S 261 (1042)
Q Consensus 261 ~ 261 (1042)
.
T Consensus 407 G 407 (429)
T PRK03629 407 G 407 (429)
T ss_pred C
Confidence 4
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=7.3e-09 Score=120.09 Aligned_cols=198 Identities=12% Similarity=0.077 Sum_probs=136.6
Q ss_pred cccCceEEEEEcCCCCEEEEEEc---CCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEE-EEeCCCC--EEEEEc
Q 001628 36 GFPSGCNKFAYDPLQKILAAATK---DGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILL-NVTSTNL--IEVWDI 109 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~---dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lv-s~s~dg~--I~vWd~ 109 (1042)
.+...+.+.+|+|+++.||..+. +..|++|+..++....+... ...+....|+|||+.|+ +.+.++. |.+||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 44567899999999999999874 36899999874333333322 23556789999998775 4555554 888899
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
.++....+..+.+..+...|+|++++|+..+. +| .|++||++++. ...+. ...+.+....|+
T Consensus 278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt-------------~~~~~~~~~~~S 342 (435)
T PRK05137 278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRIS-------------FGGGRYSTPVWS 342 (435)
T ss_pred CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEee-------------cCCCcccCeEEC
Confidence 99887777777777888999999998887664 44 67788877654 22221 012345567899
Q ss_pred cCCCCCeEEEEECC---CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC------CeEEEE
Q 001628 187 PTAESKRILIIFRD---GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN------GEILIW 257 (1042)
Q Consensus 187 p~~d~~~lls~~~d---g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d------G~I~iW 257 (1042)
| ++.+|+....+ ..|.+||+.++..... . ....+....|+ |||+.|+..+.+ ..|.++
T Consensus 343 p--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~l---------t-~~~~~~~p~~s-pDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 343 P--RGDLIAFTKQGGGQFSIGVMKPDGSGERIL---------T-SGFLVEGPTWA-PNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred C--CCCEEEEEEcCCCceEEEEEECCCCceEec---------c-CCCCCCCCeEC-CCCCEEEEEEccCCCCCcceEEEE
Confidence 9 89988877643 3678888865432111 1 12245678898 999998876653 257777
Q ss_pred eCCCc
Q 001628 258 GVPSI 262 (1042)
Q Consensus 258 d~~~~ 262 (1042)
++..+
T Consensus 410 dl~g~ 414 (435)
T PRK05137 410 DLTGR 414 (435)
T ss_pred ECCCC
Confidence 77653
No 238
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=122.38 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCEEEEEEcC----CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce-
Q 001628 40 GCNKFAYDPLQKILAAATKD----GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL- 114 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~d----g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~- 114 (1042)
..+-..|+|...++|+++-. |.|.||--.|.++.-...| ..+++|+|+|..-.|+.+..-|.+.||+..+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P--~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYP--VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccc--eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 34567899999999999644 9999997776654433332 3355699999998899999999999999998884
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQE 153 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~ 153 (1042)
.....|+.+|+.+.||++|..|++++.=|.|.+|.++..
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 445679999999999999999999999999999998843
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=4e-09 Score=106.69 Aligned_cols=146 Identities=18% Similarity=0.368 Sum_probs=105.0
Q ss_pred EEEecCCCEEEEEeC----------CCCEEEEEcCC--Cceeeeee-cCCCeEEEEEeCCCCEEEE--EeCCCcEEEEEc
Q 001628 86 LQFLENQGILLNVTS----------TNLIEVWDIDK--KRLSHVHV-CKEEITSFTIMQHSNYMLL--GDTAGKISVLKL 150 (1042)
Q Consensus 86 l~fs~~~~~Lvs~s~----------dg~I~vWd~~~--~~~~~~~~-h~~~It~v~~sp~~~~l~s--g~~dG~I~vwd~ 150 (1042)
|.|+++|.+|+.-.. -+...+|-++. .....+.- ..++|.+++|+|+++.+++ |..++.|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 788888877765444 12345555533 33444432 3457999999999988654 446789999999
Q ss_pred cCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC---CCeEEEEeccCCeeEEEeCCcccccccc
Q 001628 151 DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR---DGLISLWDIRESKSIFSMGGNVLQSVYH 227 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~---dg~I~vWd~~~~~~~~~~~g~~~~~~~~ 227 (1042)
.... + ..+ +...+..+.|+| +|++|++++. .|.|.+||.++.+.+...
T Consensus 91 ~~~~--i----~~~-----------~~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~---------- 141 (194)
T PF08662_consen 91 KGKK--I----FSF-----------GTQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF---------- 141 (194)
T ss_pred cccE--e----Eee-----------cCCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecc----------
Confidence 7433 1 111 234778899999 8999999874 467999999987766542
Q ss_pred cCCceeEEEEEccCCCEEEEEec------CCeEEEEeCCC
Q 001628 228 ETKQVTSACWACPIGSKVAVGYS------NGEILIWGVPS 261 (1042)
Q Consensus 228 ~~~~I~~l~~~~~~g~~l~sg~~------dG~I~iWd~~~ 261 (1042)
+...++.++|+ |+|++|+++.. |+.++||+...
T Consensus 142 ~~~~~t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 142 EHSDATDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccCcEEEEEEc-CCCCEEEEEEeccceeccccEEEEEecC
Confidence 23457899998 99999999875 78899999875
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6.4e-08 Score=105.45 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=88.6
Q ss_pred CCCeEEEEEeCCCCEEEE--EeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcE
Q 001628 499 GIPLTALYYDGTSRVLVS--GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQH 576 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Las--g~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~ 576 (1042)
.++|.++.|+|+++.+++ |-.-..|.||+++..... ....++=.++-|+|.|++
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~------------------------df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF------------------------DFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE------------------------eCCCCCccceEECCCCCE
Confidence 479999999999988775 455678888888764432 122377889999999998
Q ss_pred EEEEec---CCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeC------CceEEEEECCCCce
Q 001628 577 LAVGSD---QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATK------DSSVLVLDSDNGNM 647 (1042)
Q Consensus 577 La~gs~---dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~------Dg~V~vwd~~tg~~ 647 (1042)
|+.++- -|.|-|||+.+.+.+-+.... .-+-..|+| ||.+++|++. |..++||+.. |+.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-----~tt~~eW~P------dGe~flTATTaPRlrvdNg~Kiwhyt-G~~ 393 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-----NTTVFEWSP------DGEYFLTATTAPRLRVDNGIKIWHYT-GSL 393 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccC-----CceEEEEcC------CCcEEEEEeccccEEecCCeEEEEec-Cce
Confidence 776543 489999999986665333322 667889999 9999999985 5678999976 777
Q ss_pred eeee
Q 001628 648 LSTN 651 (1042)
Q Consensus 648 i~~~ 651 (1042)
+...
T Consensus 394 l~~~ 397 (566)
T KOG2315|consen 394 LHEK 397 (566)
T ss_pred eehh
Confidence 6443
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=7.9e-09 Score=119.64 Aligned_cols=196 Identities=16% Similarity=0.126 Sum_probs=133.1
Q ss_pred ccCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEE-EEeCCC--CEEEEEcC
Q 001628 37 FPSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILL-NVTSTN--LIEVWDID 110 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lv-s~s~dg--~I~vWd~~ 110 (1042)
+...+...+|+|+++.||..+.+ ..|++|+..++....+.... .......|+|+++.|+ +.+.++ .|++||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 34568899999999999998744 46999998743333333222 3344689999998775 445555 59999999
Q ss_pred CCceeeeeecCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEcc
Q 001628 111 KKRLSHVHVCKEEITSFTIMQHSNYMLLGD-TAGK--ISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 111 ~~~~~~~~~h~~~It~v~~sp~~~~l~sg~-~dG~--I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p 187 (1042)
++....+..+....+..+|+|++++|+..+ .+|. |+++++.++. ...+. . .........|+|
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt--~-----------~g~~~~~~~~Sp 345 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLT--F-----------QGNYNARASVSP 345 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEee--c-----------CCCCccCEEECC
Confidence 998777777766677899999999888765 4555 6666666554 21111 0 012334589999
Q ss_pred CCCCCeEEEEECCC---eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC---CeEEEEeCCC
Q 001628 188 TAESKRILIIFRDG---LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN---GEILIWGVPS 261 (1042)
Q Consensus 188 ~~d~~~lls~~~dg---~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d---G~I~iWd~~~ 261 (1042)
++++|+....++ .|.+||+.+++.... . +........|+ |||..++..+.+ +.|.++++..
T Consensus 346 --DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L---------t-~~~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 346 --DGKKIAMVHGSGGQYRIAVMDLSTGSVRTL---------T-PGSLDESPSFA-PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred --CCCEEEEEECCCCceeEEEEECCCCCeEEC---------C-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEEECCC
Confidence 899888776443 689999988764321 1 11123456897 999988877663 4577777754
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=4.2e-08 Score=113.79 Aligned_cols=173 Identities=11% Similarity=0.135 Sum_probs=121.2
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC---CCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS---TNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~---dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
.|.+||.+|.....+..+. ..+....|+||++.|+.++. +..|.+||+.++....+..+++.+.+.+|+|+++.|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 7888998865544454443 57888999999999988764 4679999999998777777888888999999998775
Q ss_pred -EEeCCCc--EEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CC--eEEEEeccCC
Q 001628 138 -LGDTAGK--ISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DG--LISLWDIRES 211 (1042)
Q Consensus 138 -sg~~dG~--I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg--~I~vWd~~~~ 211 (1042)
+.+.+|. |++||+.++.. ..+. .+........|+| |+.+|+..+. +| .|.+||+.++
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~--~~Lt-------------~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT--TRLT-------------DSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEecCCCceEEEEECCCCce--EEcc-------------CCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCC
Confidence 5555654 77778877652 1111 1223456689999 8998887764 33 6788888765
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC---eEEEEeCCC
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPS 261 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG---~I~iWd~~~ 261 (1042)
..... ..+...+....|+ |+|+.|+....++ .|.+|++.+
T Consensus 325 ~~~~l---------t~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 325 NPRRI---------SFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred CeEEe---------ecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCC
Confidence 53322 2223455667898 9999988776432 466666543
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=4.2e-09 Score=107.50 Aligned_cols=205 Identities=15% Similarity=0.215 Sum_probs=150.6
Q ss_pred eeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCC-----eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 32 VFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNN-----TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~-----~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
-.++-.|..+++++|.+.-+.|.+|-.+|++.-+..... ..... ..+...+..+-|+....++++.+.|..+.-
T Consensus 62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~~ 140 (404)
T KOG1409|consen 62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFAW 140 (404)
T ss_pred hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEeccccceEE
Confidence 345567999999999999999999999999998876511 11222 334578888999988888999988877653
Q ss_pred EEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 107 WDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 107 Wd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
--.+.+....-+.....-+++.+.-. +.++|...|.|....+....+.+.. + ..+|.+.++++.|.
T Consensus 141 hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~---~---------~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 141 HCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLIT---T---------FNGHTGEVTCLKWD 206 (404)
T ss_pred EeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEE---E---------EcCcccceEEEEEc
Confidence 33444442222222223333333332 7889999999988888776532221 1 34567899999999
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
| ...+|++++.|..+.+||+..++.+. ....+|...|..+++. +--..+.+++.||.|.+|+.+.
T Consensus 207 ~--~~~~LfSg~~d~~vi~wdigg~~g~~-------~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 207 P--GQRLLFSGASDHSVIMWDIGGRKGTA-------YELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred C--CCcEEEeccccCceEEEeccCCccee-------eeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccc
Confidence 9 78889999999999999998755322 2347788899999887 7788999999999999999986
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.6e-08 Score=115.31 Aligned_cols=174 Identities=14% Similarity=0.066 Sum_probs=119.1
Q ss_pred CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEE
Q 001628 60 GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYM 136 (1042)
Q Consensus 60 g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l 136 (1042)
.+|.+||.+|.....+..+ ...+....|+||++.|+.++.+ ..|++||+.++....+..+++...+.+|+|+++.|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 4688999886444444433 3567789999999999988743 46999999988876666666667789999999877
Q ss_pred E-EEeCCC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CCe--EEEEeccC
Q 001628 137 L-LGDTAG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DGL--ISLWDIRE 210 (1042)
Q Consensus 137 ~-sg~~dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg~--I~vWd~~~ 210 (1042)
+ +.+.+| .|++||+.++.. ..+. .+........|+| |+.+|+..+. +|. |.++|+.+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~--~~lt-------------~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL--TRLT-------------NHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe--EECc-------------cCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 6 445555 599999987652 1111 1122345689999 8998887764 444 66667766
Q ss_pred CeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC---eEEEEeCCC
Q 001628 211 SKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPS 261 (1042)
Q Consensus 211 ~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG---~I~iWd~~~ 261 (1042)
++.... ..+.......+|+ |+|+.|+..+.++ .|.+||+.+
T Consensus 326 g~~~~l---------t~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 326 GSAERL---------TFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCeEEe---------ecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCC
Confidence 553222 1122234467898 9999998876443 588888765
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=6.1e-06 Score=88.07 Aligned_cols=151 Identities=11% Similarity=0.124 Sum_probs=115.3
Q ss_pred CCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccc-eEEEEEeccCCccc
Q 001628 457 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG-MVRIFKLKYEPHAI 535 (1042)
Q Consensus 457 ~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG-~V~vw~~~~~~~~~ 535 (1042)
.+|++++..+. |..-+.+...+...+ -++...|.-..+..++.-++.|..|| .+-||+..+.....
T Consensus 330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iq------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr 396 (668)
T COG4946 330 VNGDYIALVSR-GKAFIMRPWDGYSIQ------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR 396 (668)
T ss_pred CCCcEEEEEec-CcEEEECCCCCeeEE------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE
Confidence 35667776654 555665555442211 35566788888888888999999999 89999998776533
Q ss_pred ccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEE
Q 001628 536 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQF 615 (1042)
Q Consensus 536 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~f 615 (1042)
. .... +.|.++..++||++++++.....+.++|+.++.+..-.... .+-|+.+.|
T Consensus 397 ----~--------e~~l----------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~---~~lItdf~~ 451 (668)
T COG4946 397 ----I--------EKDL----------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE---YGLITDFDW 451 (668)
T ss_pred ----e--------eCCc----------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc---cceeEEEEE
Confidence 1 3445 89999999999999999999999999999998875333322 347999999
Q ss_pred EeeecCCCCceEEEEEeCCc----eEEEEECCCCceeeee
Q 001628 616 ETCSLQGFEKNFLVIATKDS----SVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 616 s~~~~~~~~~~~L~s~s~Dg----~V~vwd~~tg~~i~~~ 651 (1042)
+| ++++++-+--+| .|+++|..+|+.....
T Consensus 452 ~~------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 452 HP------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cC------CceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99 999999887765 6999999988877554
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=5.1e-06 Score=93.05 Aligned_cols=200 Identities=12% Similarity=0.185 Sum_probs=123.2
Q ss_pred EEEEEcC----CeEEEEecC---CCeEEEEecCCCcceEEEEEecCCCEEEEEeC----CCCEEEEEcCCC--ceeee--
Q 001628 53 LAAATKD----GRIKLYGRH---NNTQALLESSEAVSTKFLQFLENQGILLNVTS----TNLIEVWDIDKK--RLSHV-- 117 (1042)
Q Consensus 53 LA~gs~d----g~I~iw~~~---g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~----dg~I~vWd~~~~--~~~~~-- 117 (1042)
+.+|+.. +.|.+|..+ |.+...-..........|+++|++++|.++.. ++.|..|.+... .+..+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566666 689988773 33333322222334455899999999999987 468999988764 43332
Q ss_pred -eecCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeeeecccc-cccCccccCCCCEEEEEEccCCCCCeE
Q 001628 118 -HVCKEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKYIIPLS-ASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 118 -~~h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~~ip~~-~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
......-..++++|++++|+++. .+|.|.+++++.... +......+... ..............++.++| +++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v 158 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFV 158 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE-EEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc-cceeeeecccCCCCCcccccccccceeEEECC--CCCEE
Confidence 22345667899999999999987 489999999987421 22221111000 00000111235678899999 89988
Q ss_pred EEEE-CCCeEEEEeccCCee-EEEeCCcccccccccCCceeEEEEEccCCCEEEEEe-cCCeEEEEeCC
Q 001628 195 LIIF-RDGLISLWDIRESKS-IFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGY-SNGEILIWGVP 260 (1042)
Q Consensus 195 ls~~-~dg~I~vWd~~~~~~-~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~-~dG~I~iWd~~ 260 (1042)
++.. ....|.+|+++.... +... ..........-..++|+ |++.++.+.. .++.|.++++.
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~----~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPV----DSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEE----EEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEe----eccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeec
Confidence 8876 455888999987551 1110 00012334566788898 8998776554 56788888877
No 247
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=7.1e-08 Score=111.32 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=115.4
Q ss_pred CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEE
Q 001628 60 GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYM 136 (1042)
Q Consensus 60 g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l 136 (1042)
..|.++|.+|.....+..+ ...+...+|+||++.|+.++.+ ..|.+||+.+++...+...++.+.+.+|+|+++.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 3677888876443333333 3567789999999999887743 35999999999876666666778899999999888
Q ss_pred E-EEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CCeEEEEec--cCCe
Q 001628 137 L-LGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DGLISLWDI--RESK 212 (1042)
Q Consensus 137 ~-sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg~I~vWd~--~~~~ 212 (1042)
+ +.+.+|...+|.++........ + ..+.+.+....|+| |+.+|+..+. +|...||.+ .++.
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~----l---------t~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRR----L---------TQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEE----C---------CCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCc
Confidence 6 5677887777765432110111 1 01123445678999 8998876654 456666655 4433
Q ss_pred eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC---eEEEEeCCC
Q 001628 213 SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPS 261 (1042)
Q Consensus 213 ~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG---~I~iWd~~~ 261 (1042)
.... ...........|+ |+|+.|+..+.++ .|.+||+.+
T Consensus 320 ~~~l---------t~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 320 AQRV---------TFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred eEEE---------ecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCC
Confidence 2221 1112233456897 9999998877654 588888875
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.04 E-value=6.3e-06 Score=92.30 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=93.7
Q ss_pred CCEEEEEc--CCCceeeee--ecCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 102 NLIEVWDI--DKKRLSHVH--VCKEEITSFTIMQHSNYMLLGDT----AGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 102 g~I~vWd~--~~~~~~~~~--~h~~~It~v~~sp~~~~l~sg~~----dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
+.|.+|++ .++.+..+. .-....+.++++|++++|++..+ +|.|..|++......+.... .++.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~-~~~~------- 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN-SVPS------- 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE-EEEE-------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee-eecc-------
Confidence 67999988 445443332 34456778999999999999987 57999999887521122221 1100
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCC-eeEEEe-----CCcccccccccCCceeEEEEEccCCCEEE
Q 001628 174 VSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRES-KSIFSM-----GGNVLQSVYHETKQVTSACWACPIGSKVA 246 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~-~~~~~~-----~g~~~~~~~~~~~~I~~l~~~~~~g~~l~ 246 (1042)
.......++++| ++.+|+++. .+|.|.++++... ...... .|..............++.|+ |+|++++
T Consensus 85 --~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~ 159 (345)
T PF10282_consen 85 --GGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVY 159 (345)
T ss_dssp --SSSCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEE
T ss_pred --CCCCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEE
Confidence 123556799999 888888876 6999999999873 322211 011111112345667788998 9999877
Q ss_pred EEec-CCeEEEEeCCC
Q 001628 247 VGYS-NGEILIWGVPS 261 (1042)
Q Consensus 247 sg~~-dG~I~iWd~~~ 261 (1042)
+... ...|.+|++..
T Consensus 160 v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEETTTTEEEEEEE-T
T ss_pred EEecCCCEEEEEEEeC
Confidence 7642 34788888765
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.8e-07 Score=98.15 Aligned_cols=151 Identities=12% Similarity=0.121 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEE-----eCCC-----CEEEEEc
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNV-----TSTN-----LIEVWDI 109 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~-----s~dg-----~I~vWd~ 109 (1042)
.+...++++.|+++|.++. ..|+|++.. .....+..... .+.+|.|+|-+.+|.+- ..++ .+.+|++
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~-~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIA-TLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEEEEEcc-CCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 3677899999999999875 669999887 33233333333 67789999999888652 2232 3779999
Q ss_pred CCCceeeeeecC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 110 DKKRLSHVHVCK-EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 110 ~~~~~~~~~~h~-~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
.++......... ..-++..|+.|..+.+ =--.+.+++|++..... . ...+ +...|+.+.++|.
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~--~--~~kl-----------~~~~i~~f~lSpg 176 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKT--I--QHKL-----------SVSGITMLSLSPG 176 (566)
T ss_pred ccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccc--e--eeee-----------eccceeeEEecCC
Confidence 995533222211 1226888988875432 22345799999887541 1 1111 3457888888884
Q ss_pred CCCCeEEEE-----ECCCeEEEEecc
Q 001628 189 AESKRILII-----FRDGLISLWDIR 209 (1042)
Q Consensus 189 ~d~~~lls~-----~~dg~I~vWd~~ 209 (1042)
.....+++= +.-+.|+||...
T Consensus 177 p~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 177 PEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred CCCceEEEEccCCCCCCcEEEEeccc
Confidence 233444432 234578888776
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=3.9e-08 Score=100.58 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=88.6
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC-CccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ-ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~-~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
+..+.+|.+.|+....-|...-+++.+.|.+++||--.. ++. .| .| ....+.+++++.+++ +..
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~----wp-sI--------~~~mP~~~~~~~y~~--e~~ 81 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY----WP-SI--------YHYMPSPCSAMEYVS--ESR 81 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc----Cc-hh--------hhhCCCCceEeeeec--cce
Confidence 445677888899888889999999999999999996333 321 00 00 011256899999999 899
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeE
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEI 254 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I 254 (1042)
+|++|..+|++.-+.+...-.- ...++....|...+..+.|+ .....+++.+.|..+
T Consensus 82 ~L~vg~~ngtvtefs~sedfnk----m~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 82 RLYVGQDNGTVTEFALSEDFNK----MTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQF 138 (404)
T ss_pred EEEEEEecceEEEEEhhhhhhh----cchhhhhhhhhcceeeEEec-CCceeEEEeccccce
Confidence 9999999999988877652211 12245567889999999998 777888888887544
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.5e-08 Score=115.10 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=125.4
Q ss_pred cccCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEE-EEeCCCCEEEE--Ec
Q 001628 36 GFPSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILL-NVTSTNLIEVW--DI 109 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lv-s~s~dg~I~vW--d~ 109 (1042)
..+..+.+.+|+|+++.||..+.+ ..|++|+..++....+.... ..+....|+||++.|+ +.+.++...|| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678899999999999988754 45999998743333333222 3445689999998886 45677775555 55
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
.++....+..+.+.++...|+||+++|+..+. +|...+|.++.......... . .........|+|
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~-----------~g~~~~~~~~Sp- 337 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--F-----------TGSYNTSPRISP- 337 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--c-----------CCCCcCceEECC-
Confidence 56666666666666778899999998876554 56667776543211111111 1 011233568999
Q ss_pred CCCCeEEEEECCC---eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC
Q 001628 189 AESKRILIIFRDG---LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG 252 (1042)
Q Consensus 189 ~d~~~lls~~~dg---~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG 252 (1042)
++++|+..+.++ .|.+||+.+++.... .. ........|+ |||..|+.++.++
T Consensus 338 -DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l---------t~-~~~~~~p~~s-pdg~~l~~~~~~~ 392 (427)
T PRK02889 338 -DGKLLAYISRVGGAFKLYVQDLATGQVTAL---------TD-TTRDESPSFA-PNGRYILYATQQG 392 (427)
T ss_pred -CCCEEEEEEccCCcEEEEEEECCCCCeEEc---------cC-CCCccCceEC-CCCCEEEEEEecC
Confidence 999998777654 699999988764322 11 1223567898 9999988887654
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.4e-07 Score=100.46 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC-----------CCEEEEEc
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST-----------NLIEVWDI 109 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d-----------g~I~vWd~ 109 (1042)
-+-+.|||-|.+|++=-.-| |.+|+.. .....-+..| ..|..+.|||+.+|||+-+.. ..++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~-~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE-SFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc-cHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999998878 9999988 4433333333 347789999999999997642 46999999
Q ss_pred CCCcee-eeee--cCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 110 DKKRLS-HVHV--CKEEIT-SFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 110 ~~~~~~-~~~~--h~~~It-~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
.+|.+. .+.. .+..++ -+.||.|++|+|--..+ .|.||+.....+ +...+. .-..|....|
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l-ld~Ksl-------------ki~gIr~Fsw 354 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML-LDKKSL-------------KISGIRDFSW 354 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee-eccccc-------------CCccccCccc
Confidence 999843 3333 222333 46799999999876664 688888766431 111111 1246778899
Q ss_pred ccCCCCCeEEEEEC-----CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEE
Q 001628 186 QPTAESKRILIIFR-----DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAV 247 (1042)
Q Consensus 186 ~p~~d~~~lls~~~-----dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~s 247 (1042)
+| .++.|+-=.. -..+.+-.+.+++.++ +...+.-.=+.+-|- .+|.+|+.
T Consensus 355 sP--~~~llAYwtpe~~~~parvtL~evPs~~~iR--------t~nlfnVsDckLhWQ-k~gdyLcv 410 (698)
T KOG2314|consen 355 SP--TSNLLAYWTPETNNIPARVTLMEVPSKREIR--------TKNLFNVSDCKLHWQ-KSGDYLCV 410 (698)
T ss_pred CC--CcceEEEEcccccCCcceEEEEecCccceee--------eccceeeeccEEEec-cCCcEEEE
Confidence 99 4443332211 1133344444433333 223344444566776 77877665
No 253
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.99 E-value=1.4e-07 Score=95.86 Aligned_cols=217 Identities=12% Similarity=0.186 Sum_probs=145.8
Q ss_pred CCcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeE--EEEe-cCCCcceEEEEEecCCCEEEEEe-C
Q 001628 25 SDVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQ--ALLE-SSEAVSTKFLQFLENQGILLNVT-S 100 (1042)
Q Consensus 25 ~~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~--~~~~-~~~~~~v~~l~fs~~~~~Lvs~s-~ 100 (1042)
+|..-+.+...-+.+.|.++.++++ +|++.. .+.|+||....++. +.+. ........+++-..+..+||.-+ .
T Consensus 81 DD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred ecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 3555666777888999999999877 455555 47799998763332 2222 22233454455444555666644 4
Q ss_pred CCCEEEEEcCCCce---eeeeecCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEccCCccceeeeeeecccccccCccccC
Q 001628 101 TNLIEVWDIDKKRL---SHVHVCKEEITSFTIMQHSNYMLLGDTAG-KISVLKLDQESSQIVKMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 101 dg~I~vWd~~~~~~---~~~~~h~~~It~v~~sp~~~~l~sg~~dG-~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~ 176 (1042)
-|.|+|-|+...+. ..+..|.+.|.|++.+.+|..+|+++..| .|+|||..++.. +.... ....
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~R-----------RG~d 225 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELR-----------RGVD 225 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeee-----------cCCc
Confidence 58999999987764 88899999999999999999999999999 579999998872 11111 1223
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEE-------eC---Ccc------cccccccCCceeEEEEEcc
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFS-------MG---GNV------LQSVYHETKQVTSACWACP 240 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~-------~~---g~~------~~~~~~~~~~I~~l~~~~~ 240 (1042)
...|.+++|+| +..+|++++..|+|.|+.+........ .. .+. ...+....+...-++|- .
T Consensus 226 ~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg-~ 302 (346)
T KOG2111|consen 226 RADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFG-S 302 (346)
T ss_pred hheEEEEEeCC--CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEec-C
Confidence 57899999999 999999999999999999876432211 00 000 00112223445555664 4
Q ss_pred CCCEEEEEecCCeEEEEeC
Q 001628 241 IGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 241 ~g~~l~sg~~dG~I~iWd~ 259 (1042)
+.+.++..+.||+..-+.+
T Consensus 303 ~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 303 ETNTVIAICADGSYYKFKF 321 (346)
T ss_pred CCCeEEEEEeCCcEEEEEe
Confidence 5466666667776654443
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.95 E-value=4.1e-06 Score=91.30 Aligned_cols=124 Identities=15% Similarity=0.277 Sum_probs=84.2
Q ss_pred EEeC-CCCEEEEEeccceEEEEEeccCCcccccceeeeccc--ccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEe-
Q 001628 506 YYDG-TSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGS--KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS- 581 (1042)
Q Consensus 506 ~fsp-~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs- 581 (1042)
.|.+ +++++.+... |.|.+.++..........+..++.. +.+.. ++.+.-+++++++++|.+..
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr-----------P~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR-----------PGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC-----------CCcceeEEEcCCCCEEEEEec
Confidence 3455 7777776666 8888888755433221111111111 11111 24555599999999988853
Q ss_pred ---------cCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCce-EEEEEe-CCceEEEEECCCCceeee
Q 001628 582 ---------DQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKN-FLVIAT-KDSSVLVLDSDNGNMLST 650 (1042)
Q Consensus 582 ---------~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~-~L~s~s-~Dg~V~vwd~~tg~~i~~ 650 (1042)
..+.|.++|..+.+++....... .+..++|+| |+. +|++.. .++.|.|+|..+++.+..
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~----~~~~iavS~------Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELGH----EIDSINVSQ------DAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCCC----ceeeEEECC------CCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 22479999999999985544432 899999999 998 888777 578899999999999876
Q ss_pred e
Q 001628 651 N 651 (1042)
Q Consensus 651 ~ 651 (1042)
.
T Consensus 338 i 338 (352)
T TIGR02658 338 V 338 (352)
T ss_pred e
Confidence 5
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=1.4e-06 Score=92.80 Aligned_cols=171 Identities=13% Similarity=0.172 Sum_probs=129.8
Q ss_pred CCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCC-CEEEEEcCCCceeeeeecCCCeEEE
Q 001628 49 LQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTN-LIEVWDIDKKRLSHVHVCKEEITSF 127 (1042)
Q Consensus 49 ~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg-~I~vWd~~~~~~~~~~~h~~~It~v 127 (1042)
+|.++|..++ |...|.+..++. .++..+...|+...+.-+..-++.|..|| .+-|+|.++++...+...-+.|.++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~--~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY--SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe--eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 5778888887 778776655233 23334445688888888777899999999 7999999999998888888999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCC----eE
Q 001628 128 TIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDG----LI 203 (1042)
Q Consensus 128 ~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg----~I 203 (1042)
.++++|++++++...+.+.++|++++...+. ..+..+-|+.+.||| ++.+++-+..+| .|
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~i--------------dkS~~~lItdf~~~~--nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLI--------------DKSEYGLITDFDWHP--NSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEe--------------cccccceeEEEEEcC--CceeEEEecCcceeeeeE
Confidence 9999999999999999999999999873222 122356899999999 899999888776 68
Q ss_pred EEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE
Q 001628 204 SLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG 248 (1042)
Q Consensus 204 ~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg 248 (1042)
+++|+.+++..... .....=.+-+|. |++++|.--
T Consensus 472 klydm~~~Kiy~vT---------T~ta~DfsPaFD-~d~ryLYfL 506 (668)
T COG4946 472 KLYDMDGGKIYDVT---------TPTAYDFSPAFD-PDGRYLYFL 506 (668)
T ss_pred EEEecCCCeEEEec---------CCcccccCcccC-CCCcEEEEE
Confidence 89999987754431 111222233565 888875443
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4.2e-08 Score=102.20 Aligned_cols=186 Identities=10% Similarity=0.131 Sum_probs=141.1
Q ss_pred CEEEEEEcCCeEEEEecCC-----CeEEEEecCCCcceEEEEEecCCCEEEE-EeCC--CCEEEEEcCCCc-eeeeee--
Q 001628 51 KILAAATKDGRIKLYGRHN-----NTQALLESSEAVSTKFLQFLENQGILLN-VTST--NLIEVWDIDKKR-LSHVHV-- 119 (1042)
Q Consensus 51 ~~LA~gs~dg~I~iw~~~g-----~~~~~~~~~~~~~v~~l~fs~~~~~Lvs-~s~d--g~I~vWd~~~~~-~~~~~~-- 119 (1042)
..|.++..+|.+.+|.... .....+.. ..++..|.-++...++++ |+.. +.+.|||+++.+ +..-..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 4678889999999998761 22222222 245556777776655555 8888 889999998874 221111
Q ss_pred -------cCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCC
Q 001628 120 -------CKEEITSFTIMQH--SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAE 190 (1042)
Q Consensus 120 -------h~~~It~v~~sp~--~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d 190 (1042)
.+-+++.+.|.+. ...+++++.-+.|++||...+...+....+ ...+++++...| +
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-------------~E~~is~~~l~p--~ 258 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-------------LENPISSTGLTP--S 258 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-------------ccCcceeeeecC--C
Confidence 2346788999988 789999999999999999977632222221 145899999999 8
Q ss_pred CCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 191 SKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 191 ~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++.+++|..-|.+..+|+++++..... +.+..+.|.++..+ |.+.++++++-|..++|+|+.+
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------~kg~tGsirsih~h-p~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCG-------LKGITGSIRSIHCH-PTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CcEEEEecccchhheecccCceeeccc-------cCCccCCcceEEEc-CCCceEEeeccceeEEEeeccc
Confidence 999999999999999999998755441 35667889999887 9999999999999999999987
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=9.4e-08 Score=97.67 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCCcEEEEeCCCC-ceeeeeeccccccccCCCCCCCeEEEEEeCCC-CEEEEEeccceEEEEEeccCCccccc-ceeeec
Q 001628 467 SDGAINFWDVSCP-LFLLILSLKQQSEKDFSLSGIPLTALYYDGTS-RVLVSGDQSGMVRIFKLKYEPHAIEN-SFLSFT 543 (1042)
Q Consensus 467 ~Dg~IriWd~~~~-~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~-~~Lasg~~dG~V~vw~~~~~~~~~~~-~~~~~~ 543 (1042)
.|-.|.+|+++-. ....+..+++..-. .-..-|++-.|+|.. .+|+-.+..|+|++.|+....+.... .+. .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmE---eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf--E 257 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANME---ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF--E 257 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHH---HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh--c
Confidence 4566777876532 11222333221100 011457888899875 67778888999999999854433200 000 0
Q ss_pred ccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEecc--C-CeEEEecccccc-------cCCC---e
Q 001628 544 GSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE--G-PTVLYQKHIASD-------ISSG---I 610 (1042)
Q Consensus 544 ~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~--~-~~~~~~~~~~~~-------~~~~---V 610 (1042)
+. ........+..--..|..+.|+++|+++++-+. -+|.|||+. . +...++.|...- .... =
T Consensus 258 ep----edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 258 EP----EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred cc----cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 00 000000111122267899999999999987654 689999983 2 222255553210 1122 3
Q ss_pred EEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCcee
Q 001628 611 VSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 648 (1042)
Q Consensus 611 ~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i 648 (1042)
..++|+- ++.+++||+....+++++...|...
T Consensus 333 Fec~~sg------~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 333 FECSWSG------NDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred eEEEEcC------CcceEecccccceEEEecCCCCcce
Confidence 4567776 7889999999999999997766544
No 258
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.6e-08 Score=111.06 Aligned_cols=73 Identities=12% Similarity=0.290 Sum_probs=66.4
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcC
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~ 110 (1042)
|-.+++++|+|..-+||.|..-|.+.+|..+.+..++...++..++.-+.|+++|..|+++..-|.|.+|..+
T Consensus 59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3457789999999999999999999999988667778888888999999999999999999999999999877
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=107.08 Aligned_cols=199 Identities=14% Similarity=0.255 Sum_probs=145.1
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-ee
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LS 115 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~ 115 (1042)
|.--..++|+.-..=|.+|+....|+=++++ |+...-|.... ..+.++..++-.++|++|+.+|.|..||...+. +.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 4444567777554445555555668777776 44444444443 678889999998899999999999999999876 22
Q ss_pred ee------eecCCC-----eEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 116 HV------HVCKEE-----ITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 116 ~~------~~h~~~-----It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
.+ ..|++. ||++.|+.+|-.+++|+.+|.|.+||+...+- +.+ ..| ...-+|..+.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p------l~~---kdh----~~e~pi~~l~ 278 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP------LLV---KDH----GYELPIKKLD 278 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc------eee---ccc----CCccceeeec
Confidence 22 234444 99999999999999999999999999998762 111 111 1245899999
Q ss_pred EccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 185 PQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
|.+. +..--++......++|||-.+|+.... ......+..+|+. |++..+.++-.++.+..+=++.
T Consensus 279 ~~~~-~~q~~v~S~Dk~~~kiWd~~~Gk~~as---------iEpt~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 279 WQDT-DQQNKVVSMDKRILKIWDECTGKPMAS---------IEPTSDLNDFCFV-PGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccc-CCCceEEecchHHhhhcccccCCceee---------ccccCCcCceeee-cCCceEEEecCCCcceeEEccc
Confidence 9986 444455556677889999999885544 2334568899998 8999999999998888777765
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.90 E-value=1.3e-07 Score=109.82 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=127.2
Q ss_pred cCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEE-eCCC--CEEEEEcCC
Q 001628 38 PSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNV-TSTN--LIEVWDIDK 111 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~-s~dg--~I~vWd~~~ 111 (1042)
...+...+|+|++++||.++.+ ..|++|+..++....+.... ..+..+.|+|+++.|+.. +.++ .|++||+.+
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 3457788999999999998765 47999998743233333222 344568999999877644 4443 599999998
Q ss_pred CceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 112 KRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 112 ~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
+....+..+........|+|++++|+..+. +| .|++|++.+.. ...+. .+...+....|+|
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~-------------~~~~~~~~~~~sp- 331 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT-------------FRGGYNASPSWSP- 331 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee-------------cCCCCccCeEECC-
Confidence 887666666666667889999998876654 34 57777776654 21111 0123456788999
Q ss_pred CCCCeEEEEECCC---eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC
Q 001628 189 AESKRILIIFRDG---LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG 252 (1042)
Q Consensus 189 ~d~~~lls~~~dg---~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG 252 (1042)
++.+++.+..++ .|.+||+.++..... .. ........|+ |+|..|+..+.++
T Consensus 332 -dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l---------~~-~~~~~~p~~s-pdg~~l~~~~~~~ 386 (417)
T TIGR02800 332 -DGDLIAFVHREGGGFNIAVMDLDGGGERVL---------TD-TGLDESPSFA-PNGRMILYATTRG 386 (417)
T ss_pred -CCCEEEEEEccCCceEEEEEeCCCCCeEEc---------cC-CCCCCCceEC-CCCCEEEEEEeCC
Confidence 899998888776 788999987543221 11 1122345787 9999988887765
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.1e-07 Score=104.54 Aligned_cols=188 Identities=14% Similarity=0.220 Sum_probs=142.1
Q ss_pred cCCCCEEEEEEcCCeEEEEecC-CCeEEEEe--cCCCcceEEEEEe--------------------cCCCEEEEEeCCCC
Q 001628 47 DPLQKILAAATKDGRIKLYGRH-NNTQALLE--SSEAVSTKFLQFL--------------------ENQGILLNVTSTNL 103 (1042)
Q Consensus 47 sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~--~~~~~~v~~l~fs--------------------~~~~~Lvs~s~dg~ 103 (1042)
+|-+.++|..+.||.+++|+.. ++...-|. .+.....+++.|. .+...+|-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4667899999999999999976 23333333 2223344445552 24446788888999
Q ss_pred EEEEEcCCCceeee---eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCE
Q 001628 104 IEVWDIDKKRLSHV---HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV 180 (1042)
Q Consensus 104 I~vWd~~~~~~~~~---~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V 180 (1042)
|.++++..+++... ..|.++|.++.+..+...|++++.|+.+..|+...... ... ....+..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--~~~------------~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--IRI------------WKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--eee------------eccCCCcc
Confidence 99999999985443 46999999999999999999999999999999988752 111 11124578
Q ss_pred EEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC-----CCEEEEEe-cCCeE
Q 001628 181 INILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI-----GSKVAVGY-SNGEI 254 (1042)
Q Consensus 181 ~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~-----g~~l~sg~-~dG~I 254 (1042)
.+++++| |+..+++++ +.|++||+++++.+..| .+|.++|.++.|. .+ |.+++++. .+..+
T Consensus 148 ~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~f--------tgh~s~v~t~~f~-~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 148 SSLCISP--DGKILLTAS--RQIKVLDIETKEVVITF--------TGHGSPVRTLSFT-TLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred ceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEe--------cCCCcceEEEEEE-Eeccccccceeeeccccccce
Confidence 8899999 899888886 68999999998887775 8999999999998 55 66666543 45557
Q ss_pred EEEeCCC
Q 001628 255 LIWGVPS 261 (1042)
Q Consensus 255 ~iWd~~~ 261 (1042)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7887664
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=4.3e-07 Score=105.59 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=127.5
Q ss_pred cCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEE-EeCCC--CEEEEEcCC
Q 001628 38 PSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLN-VTSTN--LIEVWDIDK 111 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs-~s~dg--~I~vWd~~~ 111 (1042)
...+...+|+|+++.||..+.+ ..|.+|+.+++....+.... ..+....|+||++.|+. .+.++ .|++||+.+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 4567889999999999887654 46888998743222222222 23445899999998874 44444 588899999
Q ss_pred CceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 112 KRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 112 ~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
+....+..+....+...|+|+++.|+..+. +| .|+++++.++. ...+.+. ........|+|
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~-------------~~~~~~~~~Sp- 340 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--AERVTFV-------------GNYNARPRLSA- 340 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecC-------------CCCccceEECC-
Confidence 887767667767778899999988776553 44 57777776655 2222100 01223468999
Q ss_pred CCCCeEEEEECC-C--eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC---CeEEEEeCCC
Q 001628 189 AESKRILIIFRD-G--LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN---GEILIWGVPS 261 (1042)
Q Consensus 189 ~d~~~lls~~~d-g--~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d---G~I~iWd~~~ 261 (1042)
+++.|+....+ + .|.+||+.+++..... . ........|+ |+|..++..+.+ ..|.++++..
T Consensus 341 -dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt---------~-~~~~~~p~~s-pdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 341 -DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT---------D-TSLDESPSVA-PNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CCCEEEEEEccCCceEEEEEECCCCCEEEcc---------C-CCCCCCceEC-CCCCEEEEEEecCCceEEEEEECCC
Confidence 88888777643 3 5788999886533221 1 1111245787 999998877654 3466666654
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.4e-06 Score=101.41 Aligned_cols=173 Identities=9% Similarity=0.027 Sum_probs=114.2
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
+|.++|.+|.....+..+ ...+....|+||+++|+..+.+ ..|.+||+.++....+....+.+.+.+|+|++++|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 477888876433333333 3567789999999999887644 369999999988666666666677899999998887
Q ss_pred E-EeCCC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CC--eEEEEeccCC
Q 001628 138 L-GDTAG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DG--LISLWDIRES 211 (1042)
Q Consensus 138 s-g~~dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg--~I~vWd~~~~ 211 (1042)
. ...+| .|++||+.++.. ..+. .+........|+| |+..++..+. +| .|.+||+.++
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~--~~lt-------------~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQL--SRVT-------------NHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEEccCCCceEEEEECCCCCe--EEcc-------------cCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 4 44555 688888887652 1111 1122345578999 8888876664 33 5777788776
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC-C--eEEEEeCCC
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN-G--EILIWGVPS 261 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d-G--~I~iWd~~~ 261 (1042)
+..... ..........|+ |+|..++..+.+ | .|.+||+.+
T Consensus 322 ~~~~lt---------~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 322 RAERVT---------FVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CEEEee---------cCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCC
Confidence 643221 111223346787 999998877653 2 466666654
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=4.3e-07 Score=105.41 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=121.6
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
.|.++|.+|.....+..+. ..+....|+|++++|+.+..+ ..|++||+.++....+..+.+.+.+++|+|+++.|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 5788888754444444333 457778999999999887654 479999999988666666777788899999998776
Q ss_pred E-EeCCC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC-C--eEEEEeccCC
Q 001628 138 L-GDTAG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD-G--LISLWDIRES 211 (1042)
Q Consensus 138 s-g~~dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d-g--~I~vWd~~~~ 211 (1042)
. .+.+| .|++|++.++.. ..+. .+........|+| ++.+|+..+.. + .|.+||+.++
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~--~~l~-------------~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL--TRLT-------------NGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred EEECCCCCccEEEEECCCCCE--EECC-------------CCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 4 44444 588888887652 1111 0122344568999 89888776643 3 5778888776
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC---eEEEEeCCCc
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG---EILIWGVPSI 262 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG---~I~iWd~~~~ 262 (1042)
+.... ..+...+....|+ |+|..++.++.++ .|.+||+.++
T Consensus 313 ~~~~l---------~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 313 EVRRL---------TFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CEEEe---------ecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 53322 2234456678898 9999999988876 7888888763
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.7e-06 Score=100.15 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=105.4
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
.|.++|.+|.-...+... ...+....|+|||+.|+..+.+ ..|.+||+.+++...+...++.....+|+|+++.|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRS-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecC-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 677778875433333322 3567778999999998877543 258999999887655555555566889999999776
Q ss_pred E-EeCCCc--EEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CC--eEEEEeccCC
Q 001628 138 L-GDTAGK--ISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR-DG--LISLWDIRES 211 (1042)
Q Consensus 138 s-g~~dG~--I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg--~I~vWd~~~~ 211 (1042)
. .+.+|. |++||+.++. ...+. .+........|+| |+.+|+..+. ++ .|.++|+.++
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~--~~~lt-------------~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA--LTRIT-------------RHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC--eEECc-------------cCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 5 566775 7777877665 22111 1123455678999 8888876654 33 4666777776
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d 251 (1042)
+..... .........+|+ |||+.|+..+.+
T Consensus 341 ~~~~Lt---------~~g~~~~~~~~S-pDG~~l~~~~~~ 370 (448)
T PRK04792 341 KVSRLT---------FEGEQNLGGSIT-PDGRSMIMVNRT 370 (448)
T ss_pred CEEEEe---------cCCCCCcCeeEC-CCCCEEEEEEec
Confidence 543321 111223346787 999988776553
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=5.9e-07 Score=104.03 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=123.1
Q ss_pred cCceEEEEEcCCCCEEEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEE-EeCCCC--EEEEEcCC
Q 001628 38 PSGCNKFAYDPLQKILAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLN-VTSTNL--IEVWDIDK 111 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs-~s~dg~--I~vWd~~~ 111 (1042)
+..+.+.+|+|+|+.||..+.+ ..|++|+..++....+.... .......|+||++.|+. .+.++. |++||+.+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 4456789999999999987654 35888888743222222211 22345889999998865 455564 88889998
Q ss_pred CceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 112 KRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 112 ~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
+....+..+.......+|+|++++|+..+. +| .|+++|+.+++ ...+. . . ........|+|
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt--~-----~------g~~~~~~~~Sp- 359 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLT--F-----E------GEQNLGGSITP- 359 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEe--c-----C------CCCCcCeeECC-
Confidence 887777667667788999999998876554 44 46666666554 22221 0 0 11223468999
Q ss_pred CCCCeEEEEEC-CC--eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC-C--eEEEEeCCC
Q 001628 189 AESKRILIIFR-DG--LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN-G--EILIWGVPS 261 (1042)
Q Consensus 189 ~d~~~lls~~~-dg--~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d-G--~I~iWd~~~ 261 (1042)
|+.+|+.... ++ .|.++|+.++..... ... .......|+ |+|..|+..+.+ | .+.+++...
T Consensus 360 -DG~~l~~~~~~~g~~~I~~~dl~~g~~~~l---------t~~-~~d~~ps~s-pdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 360 -DGRSMIMVNRTNGKFNIARQDLETGAMQVL---------TST-RLDESPSVA-PNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCCeEEc---------cCC-CCCCCceEC-CCCCEEEEEEecCCceEEEEEECCC
Confidence 8888877654 34 455677777653221 111 111234687 999988776654 3 366667653
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=8.8e-05 Score=77.76 Aligned_cols=148 Identities=13% Similarity=0.209 Sum_probs=93.5
Q ss_pred CCCEEEEEcCCCc----eeeeeecCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 101 TNLIEVWDIDKKR----LSHVHVCKEEITSFTIMQHSNYMLLGDTA---GKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 101 dg~I~vWd~~~~~----~~~~~~h~~~It~v~~sp~~~~l~sg~~d---G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
+.-|++|++++.. ...+....+..+-++|+|+.++|+++-.+ |.|..|.++.....+..+... ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----~~---- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----TL---- 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----cc----
Confidence 4669999998543 44555677899999999999999998654 788889888642213322111 11
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccC-CeeEEEe-----CCcccccccccCCceeEEEEEccCCCEEE
Q 001628 174 VSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRE-SKSIFSM-----GGNVLQSVYHETKQVTSACWACPIGSKVA 246 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~-~~~~~~~-----~g~~~~~~~~~~~~I~~l~~~~~~g~~l~ 246 (1042)
...+-..++.++ ++.+|+++. .-|.|.++-++. |...... .+.... .......+.+..+. |++++|+
T Consensus 87 --~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ~~~h~H~a~~t-P~~~~l~ 160 (346)
T COG2706 87 --PGSPPCYVSVDE--DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH-ERQESPHVHSANFT-PDGRYLV 160 (346)
T ss_pred --CCCCCeEEEECC--CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC-ccccCCccceeeeC-CCCCEEE
Confidence 122337899999 888887775 678999998866 3321110 011011 11122336667776 8998877
Q ss_pred EEec-CCeEEEEeCCCc
Q 001628 247 VGYS-NGEILIWGVPSI 262 (1042)
Q Consensus 247 sg~~-dG~I~iWd~~~~ 262 (1042)
+..- --.|.+|++.++
T Consensus 161 v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 161 VPDLGTDRIFLYDLDDG 177 (346)
T ss_pred EeecCCceEEEEEcccC
Confidence 7642 125777777753
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.2e-07 Score=96.89 Aligned_cols=213 Identities=16% Similarity=0.232 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCC--C----eEEEEecCC-----------CcceEEEEEecCCC--EEEEEe
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHN--N----TQALLESSE-----------AVSTKFLQFLENQG--ILLNVT 99 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g--~----~~~~~~~~~-----------~~~v~~l~fs~~~~--~Lvs~s 99 (1042)
.-|+++.|+..|.+||+|..+|+|.+|..+. . ....++.|. ...|..+.|.++++ .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 4589999999999999999999999998761 1 233444333 23677889998654 456667
Q ss_pred CCCCEEEEEcCCCcee-------------------------------------eeeecCCCeEEEEEeCCCCEEEEEeCC
Q 001628 100 STNLIEVWDIDKKRLS-------------------------------------HVHVCKEEITSFTIMQHSNYMLLGDTA 142 (1042)
Q Consensus 100 ~dg~I~vWd~~~~~~~-------------------------------------~~~~h~~~It~v~~sp~~~~l~sg~~d 142 (1042)
.|.+|++|.+..+... ....|+-.|.++.++.|...+++++ |
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence 8999999987543211 1123667788999999988877664 6
Q ss_pred CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee------EEE
Q 001628 143 GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS------IFS 216 (1042)
Q Consensus 143 G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~------~~~ 216 (1042)
=.|-+|+++-...+....... |... ..-..-|++..|||. ..+.++-.+..|+|++-|++.... ++.
T Consensus 185 LRINLWnlei~d~sFnIVDIK-P~nm-----EeLteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIK-PANM-----EELTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eeeeeccccccCCceeEEEcc-ccCH-----HHHHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 689999987654322222100 0000 001236788899996 788889999999999999985321 110
Q ss_pred e--CCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 217 M--GGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 217 ~--~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
- .+....-+..--..|..+.|+ .+|+++++-.. -+|++||+.-
T Consensus 258 epedp~~rsffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccc
Confidence 0 000001112234678889998 89999887654 4899999964
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=107.96 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=120.4
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcc
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 534 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~ 534 (1042)
.+++.-++++|+--+.|.+|+.... ..+. .+.+|.+.|-++.++.+++++++.++|.++|+|.+++.+..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~d-n~p~---------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHED-NKPI---------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred ccCcEEEEEeccccccEEEEecccc-CCcc---------eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 4445558889999999999998732 2222 23799999999999999999999999999999999876553
Q ss_pred cccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE-EecccccccCCCeEEE
Q 001628 535 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL-YQKHIASDISSGIVSL 613 (1042)
Q Consensus 535 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~-~~~~~~~~~~~~V~sl 613 (1042)
.. .. ..| ++.|..++|.|+ .++++++|.+.++|+..+..+. |..|... .|..+
T Consensus 211 ~~-~~---------fgH----------saRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~----~iw~~ 264 (967)
T KOG0974|consen 211 GC-TG---------FGH----------SARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGK----GIWKI 264 (967)
T ss_pred Cc-cc---------ccc----------cceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhc----ceeEE
Confidence 31 11 244 499999999987 9999999999999988776664 6666543 89999
Q ss_pred EEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 614 QFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 614 ~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
+..+ +..+++|++.||.+++|+..
T Consensus 265 ~~~~------~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 265 AVPI------GVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEcC------CceEEEeeccCcchhhhhhh
Confidence 9998 88999999999999999965
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.5e-06 Score=95.90 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=119.3
Q ss_pred CCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEE--------------------eCCCCEEEE
Q 001628 457 KVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY--------------------DGTSRVLVS 516 (1042)
Q Consensus 457 ~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~f--------------------sp~~~~Las 516 (1042)
+...++|....||.+|+||...+.++.-+.-. ..-.+..++..| +.+..+++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-------~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-------ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc-------hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 45568999999999999999987654322110 001122222222 234567888
Q ss_pred EeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeE
Q 001628 517 GDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 596 (1042)
Q Consensus 517 g~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~ 596 (1042)
|...|.|.+|+...+......+- .. |.++|.++.++.+-..|-+++.|+.|..|+.....+
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st---------~~----------h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLST---------DK----------HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEec---------CC----------CCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 99999999999987766331111 23 449999999999999999999999999999999888
Q ss_pred E--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecCC
Q 001628 597 L--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHP 655 (1042)
Q Consensus 597 ~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~ 655 (1042)
+ ++.. ...+.+++.+| |+..|++|+ +.|.+||.++++++..++-++
T Consensus 137 ~~~~~~~-----~~~~~sl~is~------D~~~l~~as--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 137 IRIWKEQ-----KPLVSSLCISP------DGKILLTAS--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred eeeeccC-----CCccceEEEcC------CCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence 7 3333 33899999999 999999998 689999999999998885443
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.68 E-value=7.8e-08 Score=116.98 Aligned_cols=188 Identities=12% Similarity=0.246 Sum_probs=149.3
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV 117 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~ 117 (1042)
..|.++.-+|...+-.+|+.||.|++|.-. +.....+..-....|+.+.|+.+|+.+..+..||.+.+|.+..+-...-
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~ 2288 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSW 2288 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceecc
Confidence 358888899999999999999999998654 2555566644458899999999999999999999999999986667788
Q ss_pred eecCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeE
Q 001628 118 HVCKEEITSFTIMQHSNYMLLGD---TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 118 ~~h~~~It~v~~sp~~~~l~sg~---~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~l 194 (1042)
+.|....+.+.|.. ..+++++ .++.+.+||.--... ...+ ...|.+.++++++-| ....+
T Consensus 2289 qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-----~s~v--------~~~H~~gaT~l~~~P--~~qll 2351 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-----NSLV--------HTCHDGGATVLAYAP--KHQLL 2351 (2439)
T ss_pred ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-----ccee--------eeecCCCceEEEEcC--cceEE
Confidence 88999889988877 5566654 578999999543321 1112 134788999999999 89999
Q ss_pred EEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 195 ls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
++|+.+|.|++||++..+....+ +. |. ...+|++|+..|.|+||++...
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~-------------~~----~~--~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTF-------------QA----LD--TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHh-------------hh----hh--hhheeeccCcccceEEEEcccc
Confidence 99999999999999986532221 11 32 6789999999999999999875
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.68 E-value=1.7e-07 Score=98.36 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeE---EEEecCCCcceEEEEEecCCCEEEEE---eCCCCEEEEEcCCCc
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQ---ALLESSEAVSTKFLQFLENQGILLNV---TSTNLIEVWDIDKKR 113 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~---~~~~~~~~~~v~~l~fs~~~~~Lvs~---s~dg~I~vWd~~~~~ 113 (1042)
.+....++|.+++||+++.+....+++..++.. ..-...-...-+++.|..+......+ ++...+.+|+...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 355677899999999999998877777653221 11111111222335555544444443 445567778777777
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
.....+|-..++.++|+||++++++++.|+.|+|-.+...-. + .+...+|..-|..++..+ +..
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------I-----esfclGH~eFVS~isl~~---~~~ 207 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------I-----ESFCLGHKEFVSTISLTD---NYL 207 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------h-----hhhccccHhheeeeeecc---Cce
Confidence 888889999999999999999999999999999988776421 1 001345678899999986 556
Q ss_pred EEEEECCCeEEEEeccCCeeEEEe
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSM 217 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~ 217 (1042)
|++++.|++|++||+.+++.+..+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeecCCCCcEEEEecccCCccccc
Confidence 999999999999999998866443
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.67 E-value=6.5e-05 Score=82.04 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEEccCCccceeeeeeecccccccC
Q 001628 102 NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT----------AGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 102 g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~----------dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
|+|.|.|..+.++.....-...-..+ ++|+++.|+++.. +..|.+||..+.+. ...+ .+|....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i--~~p~~p~-- 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADI--ELPEGPR-- 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEE--ccCCCch--
Confidence 89999999998854433332222334 9999999998876 68999999999762 1111 1111100
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEEE-C-CCeEEEEeccCCeeEEEe
Q 001628 172 NEVSGDPAVINILPQPTAESKRILIIF-R-DGLISLWDIRESKSIFSM 217 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~~-~-dg~I~vWd~~~~~~~~~~ 217 (1042)
.........++++| |+.+|++.. . ++.|.+.|+.+++.+..+
T Consensus 101 --~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 101 --FLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred --hhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 00012334688999 999999877 4 789999999999877764
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=1.8e-07 Score=113.97 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=97.6
Q ss_pred CEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCc
Q 001628 93 GILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGN 172 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~ 172 (1042)
+.......++...-|..+...+.. ..+-..|.++.-+|...+-++|+.||.|++|....++. +...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~-k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--v~~~----------- 2246 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMI-KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--VVCF----------- 2246 (2439)
T ss_pred ccCCcccCCccccceecccceeEe-ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe--EEEe-----------
Confidence 344444455556666554443222 22336789999999999999999999999999888762 1111
Q ss_pred cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEe---
Q 001628 173 EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGY--- 249 (1042)
Q Consensus 173 ~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~--- 249 (1042)
.......|+.+.|+- .|+...++..||.+.+|.+.. ++ ...+..|......+.|. +..+++++
T Consensus 2247 rt~g~s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~p-k~--------~~s~qchnk~~~Df~Fi---~s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2247 RTAGNSRVTRSRFNH--QGNKFGIVDGDGDLSLWQASP-KP--------YTSWQCHNKALSDFRFI---GSLLATAGRSS 2312 (2439)
T ss_pred eccCcchhhhhhhcc--cCCceeeeccCCceeecccCC-cc--------eeccccCCccccceeee---ehhhhccccCC
Confidence 011236899999998 899999999999999999983 22 22346788888888887 36666654
Q ss_pred cCCeEEEEeCC
Q 001628 250 SNGEILIWGVP 260 (1042)
Q Consensus 250 ~dG~I~iWd~~ 260 (1042)
.++.+.+||..
T Consensus 2313 d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2313 DNRNVCLWDTL 2323 (2439)
T ss_pred CCCcccchhcc
Confidence 45677777754
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.64 E-value=7.2e-05 Score=85.38 Aligned_cols=146 Identities=12% Similarity=0.196 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 92 QGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 92 ~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
+..+++++.++.|..+|..++++.........+..- ...++..+++++.+|.++.+|..+++.... +.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~---~~~------- 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWR---AKL------- 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeee---ecc-------
Confidence 457888889999999999998865444444433321 123567889999999999999988763111 111
Q ss_pred ccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC
Q 001628 172 NEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 172 ~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d 251 (1042)
.+.+. -.|...++.++++..+|.|..||..+++.+..+...... ..... ..+.... +..++.+..+
T Consensus 134 -----~~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~~~-~~sp~~~---~~~v~~~~~~ 199 (377)
T TIGR03300 134 -----SSEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--LTLRG-SASPVIA---DGGVLVGFAG 199 (377)
T ss_pred -----Cceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc--eeecC-CCCCEEE---CCEEEEECCC
Confidence 11111 122113567888889999999999998877654211100 00000 0111222 3467778888
Q ss_pred CeEEEEeCCCc
Q 001628 252 GEILIWGVPSI 262 (1042)
Q Consensus 252 G~I~iWd~~~~ 262 (1042)
|.+..+|..++
T Consensus 200 g~v~ald~~tG 210 (377)
T TIGR03300 200 GKLVALDLQTG 210 (377)
T ss_pred CEEEEEEccCC
Confidence 99988888764
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.62 E-value=3.1e-05 Score=98.20 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=109.2
Q ss_pred CcCceeee-eecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecCCCeEEEEecCCC-------------cceEEEEEec
Q 001628 26 DVDPRLVF-HYGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRHNNTQALLESSEA-------------VSTKFLQFLE 90 (1042)
Q Consensus 26 ~~~~~~~~-~~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~-------------~~v~~l~fs~ 90 (1042)
+-++|.+. .+.+| .-+++++. +++.++-+.+++|++|+.+|.....+..... .....|+|.+
T Consensus 557 ~~~~~~~~s~l~~P---~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~ 633 (1057)
T PLN02919 557 DNDPRLLTSPLKFP---GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA 633 (1057)
T ss_pred cCCcccccccCCCC---ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC
Confidence 44555332 23444 45689886 5566666677999999999766544432110 1235689999
Q ss_pred CCCEEEEEeC-CCCEEEEEcCCCceeeeeec-----------------CCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcc
Q 001628 91 NQGILLNVTS-TNLIEVWDIDKKRLSHVHVC-----------------KEEITSFTIMQHSNYM-LLGDTAGKISVLKLD 151 (1042)
Q Consensus 91 ~~~~Lvs~s~-dg~I~vWd~~~~~~~~~~~h-----------------~~~It~v~~sp~~~~l-~sg~~dG~I~vwd~~ 151 (1042)
+++.|..+.. ++.|+++|+.++.+.++.+- -..-+.++|+|++..| ++...++.|++||..
T Consensus 634 ~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~ 713 (1057)
T PLN02919 634 KKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS 713 (1057)
T ss_pred CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC
Confidence 8877666554 56799999988776555321 0123679999955444 555678899999987
Q ss_pred CCccceeeee-eecccccccCccccCCCCEEEEEEccCCCCCeEEEE-ECCCeEEEEeccCCee
Q 001628 152 QESSQIVKMK-YIIPLSASHGNEVSGDPAVINILPQPTAESKRILII-FRDGLISLWDIRESKS 213 (1042)
Q Consensus 152 ~~~~~~~~~~-~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~-~~dg~I~vWd~~~~~~ 213 (1042)
++........ +........+ ....-....+|+++| ++.+|+++ +.++.|++||+.++..
T Consensus 714 ~g~v~~~~G~G~~~~~~g~~~-~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 714 DGVTRVFSGDGYERNLNGSSG-TSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CCeEEEEecCCccccCCCCcc-ccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcE
Confidence 7642110000 0000000000 000113456799999 88766555 4678999999987653
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=4.8e-06 Score=95.64 Aligned_cols=197 Identities=10% Similarity=0.079 Sum_probs=119.0
Q ss_pred ceEEEEEcCCCCEEE---EEEcC--CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC-CC----CEEEEEc
Q 001628 40 GCNKFAYDPLQKILA---AATKD--GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS-TN----LIEVWDI 109 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA---~gs~d--g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~-dg----~I~vWd~ 109 (1042)
.+..-+|+|||+.++ +...+ ..|.+.+.+|+....+.... .......|+|||+.|+..+. +| .+.+|++
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 345669999998543 34444 35777777743333333222 23344789999998887663 22 3444777
Q ss_pred CCC---ceeeeee-cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEE--ccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 110 DKK---RLSHVHV-CKEEITSFTIMQHSNYMLLGD-TAGKISVLK--LDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 110 ~~~---~~~~~~~-h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd--~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
..+ ....+.. ..+..+..+|+|||++|+..+ .+|...+|. ++...... ..+ ......+..
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~----~~l---------t~~~~~~~~ 331 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP----RLL---------TKKYRNSSC 331 (428)
T ss_pred ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce----EEe---------ccCCCCccc
Confidence 653 3333332 224456789999999877655 567555554 43211001 111 011235567
Q ss_pred EEEccCCCCCeEEEEECC---CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec---CCeEEE
Q 001628 183 ILPQPTAESKRILIIFRD---GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS---NGEILI 256 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~d---g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~---dG~I~i 256 (1042)
..|+| ||.+|+....+ ..|.+||+.+++.... ......+....|+ |||..|+.... .+.|.+
T Consensus 332 p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L---------t~~~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 332 PAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL---------TTSPENKESPSWA-IDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred eeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc---------cCCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 89999 89988876543 4689999998764332 1222345678898 99998876543 356888
Q ss_pred EeCCCc
Q 001628 257 WGVPSI 262 (1042)
Q Consensus 257 Wd~~~~ 262 (1042)
|++.++
T Consensus 400 vdl~~g 405 (428)
T PRK01029 400 ISLITK 405 (428)
T ss_pred EECCCC
Confidence 888764
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=4.4e-05 Score=87.10 Aligned_cols=191 Identities=12% Similarity=0.151 Sum_probs=112.0
Q ss_pred CCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEE
Q 001628 50 QKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFT 128 (1042)
Q Consensus 50 ~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~ 128 (1042)
+..|.+++.+|.|..+|.. |+....+...... .... ..+++.++.++.++.+..+|..++++.......+.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-~~~p--~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL-SGGV--GADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-ccce--EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 5678889999999999964 5555444433311 1111 1245578888899999999999998655444444444322
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE--EccCCCCCeEEEEECCCeEEEE
Q 001628 129 IMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL--PQPTAESKRILIIFRDGLISLW 206 (1042)
Q Consensus 129 ~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~--~~p~~d~~~lls~~~dg~I~vW 206 (1042)
.. .+..+++++.+|.|+.||..+++.... +... .+...+. -+|...+..++.+..+|.+..+
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~---~~~~------------~~~~~~~~~~sp~~~~~~v~~~~~~g~v~al 205 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWT---YSRV------------TPALTLRGSASPVIADGGVLVGFAGGKLVAL 205 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeE---EccC------------CCceeecCCCCCEEECCEEEEECCCCEEEEE
Confidence 22 346788888999999999988763111 1100 0000000 0111123467888889999999
Q ss_pred eccCCeeEEEeCCccccc-c-cccCCcee-EEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 207 DIRESKSIFSMGGNVLQS-V-YHETKQVT-SACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 207 d~~~~~~~~~~~g~~~~~-~-~~~~~~I~-~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
|..+|+.+.......... . ......+. +... .+..+.+++.+|.+..||..++
T Consensus 206 d~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCC
Confidence 999987665421000000 0 00000011 1112 3567778888999999999875
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.61 E-value=2.6e-07 Score=103.10 Aligned_cols=204 Identities=14% Similarity=0.179 Sum_probs=147.1
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC--CCeEEEEecCCCcceEEEEEecC--CCEEEEEeCCCCEEEEEcC
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH--NNTQALLESSEAVSTKFLQFLEN--QGILLNVTSTNLIEVWDID 110 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~--g~~~~~~~~~~~~~v~~l~fs~~--~~~Lvs~s~dg~I~vWd~~ 110 (1042)
.-..+.+.++..+|.|+-+|.+++-| +.+.|.+ ++.-..+.+-..-.|-.++|+|. ..+-++......-.+|++.
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 34556778899999999999999988 6666665 34445555545456777888874 2344444455566789986
Q ss_pred CCc----eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 111 KKR----LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 111 ~~~----~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
... -..+++|...|+.+.|.|.. ..+++++.|-.|..||+..... ++..-..+ ......|.|
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w--------~s~asqVkw 166 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSW--------RSAASQVKW 166 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-----ceeeeecc--------cccCceeee
Confidence 543 45668899999999999987 6788999999999999988652 22111112 235567899
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+-. ++ .+++.+....|.+||.+.|. ..+....+|...|..+.|....-..+.+.+.||+|++||...
T Consensus 167 nyk-~p-~vlasshg~~i~vwd~r~gs-------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 167 NYK-DP-NVLASSHGNDIFVWDLRKGS-------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccc-Cc-chhhhccCCceEEEeccCCC-------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 984 44 46666777889999999765 333445668888888888744567789999999999999875
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.60 E-value=2.3e-05 Score=84.97 Aligned_cols=126 Identities=15% Similarity=0.232 Sum_probs=85.5
Q ss_pred EEEEcCCCceeeeee-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEE
Q 001628 105 EVWDIDKKRLSHVHV-CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINI 183 (1042)
Q Consensus 105 ~vWd~~~~~~~~~~~-h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v 183 (1042)
.+|+..+........ -.-++..+.+||.|.+|++....| |.+|.-.... .+.++. ...|..+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~-~l~~~~---------------~~~V~~~ 77 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA-KLVRFR---------------HPDVKYL 77 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchh-heeeee---------------cCCceec
Confidence 456666655444433 445788999999999999888775 8888877654 233332 3478888
Q ss_pred EEccCCCCCeEEEEECCC---------------eEEEEeccCCeeEEEeCCcccccccccCCc--ee-EEEEEccCCCEE
Q 001628 184 LPQPTAESKRILIIFRDG---------------LISLWDIRESKSIFSMGGNVLQSVYHETKQ--VT-SACWACPIGSKV 245 (1042)
Q Consensus 184 ~~~p~~d~~~lls~~~dg---------------~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~--I~-~l~~~~~~g~~l 245 (1042)
.|+| ++++|.+=...+ .+.+||+.++..++.+.+. ..+ .+ -+.|+ -+..++
T Consensus 78 ~fSP--~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~--------~q~~~~Wp~~k~s-~~D~y~ 146 (561)
T COG5354 78 DFSP--NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI--------SQPYLGWPVLKFS-IDDKYV 146 (561)
T ss_pred ccCc--ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc--------CCcccccceeeee-ecchhh
Confidence 9999 888888865433 4899999999988876322 222 33 46677 455555
Q ss_pred EEEecCCeEEEEeC
Q 001628 246 AVGYSNGEILIWGV 259 (1042)
Q Consensus 246 ~sg~~dG~I~iWd~ 259 (1042)
+-. ....+.|+++
T Consensus 147 ARv-v~~sl~i~e~ 159 (561)
T COG5354 147 ARV-VGSSLYIHEI 159 (561)
T ss_pred hhh-ccCeEEEEec
Confidence 444 2336999997
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=7.2e-07 Score=93.83 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=110.3
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCce--eeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLF--LLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~--~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
.++.+++++.+..+....++++..... .++-. ..-...-+++.|..+.....++..-|.+.-++.-...
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~---------~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV---------SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeE---------eecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 677888999998888877777665431 11110 1112334566666666666666555555544443211
Q ss_pred cccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEE
Q 001628 533 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 612 (1042)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~s 612 (1042)
... .... .+|. .-++.++|+||++++.+++.|..|+|-.....-++ ...--+|..-|..
T Consensus 141 ~~~-~~~~--------lGhv----------Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I--esfclGH~eFVS~ 199 (390)
T KOG3914|consen 141 SGR-CEPI--------LGHV----------SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI--ESFCLGHKEFVST 199 (390)
T ss_pred ccC-cchh--------hhhh----------hhhheeeecCCCCEEEEecCCceEEEEecCcccch--hhhccccHhheee
Confidence 111 0112 4666 88999999999999999999999999888776665 1111224558999
Q ss_pred EEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeec
Q 001628 613 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 653 (1042)
Q Consensus 613 l~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~ 653 (1042)
++.. ++..|++|+.|++|++||..+|+.+.++.+
T Consensus 200 isl~-------~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 200 ISLT-------DNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeec-------cCceeeecCCCCcEEEEecccCCcccccch
Confidence 9998 477899999999999999999999977643
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=5.9e-06 Score=82.07 Aligned_cols=156 Identities=16% Similarity=0.073 Sum_probs=111.6
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC--CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccce
Q 001628 462 FITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG--IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 539 (1042)
Q Consensus 462 l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~--~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~ 539 (1042)
+..++.|.++++.+++.+..... .|. ..+.+++++++++++++.+....|..|.++......+...
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred eeeccCCcceeEEEEecCcccce------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence 45577888999999887654322 222 3378899999999999999999999999987655442211
Q ss_pred eeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEe
Q 001628 540 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFET 617 (1042)
Q Consensus 540 ~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~ 617 (1042)
. ... ...=-+..|+.....+|+++.||++.|||++..... ........|.+.|..+.|++
T Consensus 199 ~--------a~t----------~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 199 E--------APT----------SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred e--------ccc----------CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 1 011 133456788988999999999999999999865443 33333445888999999998
Q ss_pred eecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 618 CSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 618 ~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
++ .-++|+..-.=+.+.|.|+++++-....
T Consensus 261 ~g----~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 261 YG----LLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CC----cceEEEEecCcceEEEEEcccCceeeEE
Confidence 32 1345555555688999999988765444
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=2.7e-05 Score=79.17 Aligned_cols=211 Identities=16% Similarity=0.209 Sum_probs=131.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEecC---CCeEEEEecC--CCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee
Q 001628 43 KFAYDPLQKILAAATKDGRIKLYGRH---NNTQALLESS--EAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV 117 (1042)
Q Consensus 43 ~la~sp~~~~LA~gs~dg~I~iw~~~---g~~~~~~~~~--~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~ 117 (1042)
.++.+++|++||+-. |..|.|=... +.+....+.+ ....=+.++|+||+..||.+...|+|+|+|+.+..+..+
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 467889999999866 5667665433 1233333322 223445699999999999999999999999987664433
Q ss_pred ee-------cCCCeEEEEEeCCC------CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 118 HV-------CKEEITSFTIMQHS------NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 118 ~~-------h~~~It~v~~sp~~------~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
.. ....|..+.|.+.. ..|++-.-+|.++-|-+..+...--+..+.+... ...+..|.++.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~------~~yp~Gi~~~v 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS------SHYPHGINSAV 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec------ccCCCceeEEE
Confidence 32 12456667675432 2355556677777777643211011111221111 11256899999
Q ss_pred EccCCCCCeEEEEEC----C-------CeEEEEeccCCeeEEE----eCCcc---------cc--------cccccCCce
Q 001628 185 PQPTAESKRILIIFR----D-------GLISLWDIRESKSIFS----MGGNV---------LQ--------SVYHETKQV 232 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~----d-------g~I~vWd~~~~~~~~~----~~g~~---------~~--------~~~~~~~~I 232 (1042)
++| ..+.|++|+. + .-+.-|.+-++.+-+. .+... .+ ........|
T Consensus 155 y~p--~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i 232 (282)
T PF15492_consen 155 YHP--KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI 232 (282)
T ss_pred EcC--CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCce
Confidence 999 6777777762 1 1355777665442221 10000 00 012346789
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEeCCCcc
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPSIL 263 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~ 263 (1042)
..|..+ |||..||+.+.+|.|.+|++.+-+
T Consensus 233 ~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 233 FKMSLS-PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEEEC-CCCCEEEEEEcCCeEEEEecCcch
Confidence 999998 999999999999999999999853
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=4.5e-05 Score=79.87 Aligned_cols=219 Identities=12% Similarity=0.174 Sum_probs=144.3
Q ss_pred eeeeeecccCce-EEEEEcCCCCEEEEEEcC-CeEEEEecC--CCe---EEEEecCCC-------cc-eEEEEEecCCCE
Q 001628 30 RLVFHYGFPSGC-NKFAYDPLQKILAAATKD-GRIKLYGRH--NNT---QALLESSEA-------VS-TKFLQFLENQGI 94 (1042)
Q Consensus 30 ~~~~~~G~~~~v-~~la~sp~~~~LA~gs~d-g~I~iw~~~--g~~---~~~~~~~~~-------~~-v~~l~fs~~~~~ 94 (1042)
..+.+.-.++.. +-+++|+++++|.++... |.|.++-.+ |.+ ...+.+... .+ +.+..|.|++++
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 345555555554 789999999999999876 889998764 322 222222211 22 778899999999
Q ss_pred EEEEeC-CCCEEEEEcCCCceeeee----ecCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeee--eeeccc
Q 001628 95 LLNVTS-TNLIEVWDIDKKRLSHVH----VCKEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKM--KYIIPL 166 (1042)
Q Consensus 95 Lvs~s~-dg~I~vWd~~~~~~~~~~----~h~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~--~~~ip~ 166 (1042)
|++.+- ...|.+|+++.+.+.... .-...-..|.|+|++++.++-++ +++|.+|..+.....+..+ ...+|.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 988875 346999999987743332 22355789999999999998776 8999999998843223333 234444
Q ss_pred ccccCccccCCCCEEEEEEccCCCCCeEEEEEC-CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEE
Q 001628 167 SASHGNEVSGDPAVINILPQPTAESKRILIIFR-DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 167 ~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~-dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l 245 (1042)
... .......|..+| ||.+|.++-. ...|.++.++.......+ ......+...-....++ ++|++|
T Consensus 239 dF~------g~~~~aaIhis~--dGrFLYasNRg~dsI~~f~V~~~~g~L~~----~~~~~teg~~PR~F~i~-~~g~~L 305 (346)
T COG2706 239 DFT------GTNWAAAIHISP--DGRFLYASNRGHDSIAVFSVDPDGGKLEL----VGITPTEGQFPRDFNIN-PSGRFL 305 (346)
T ss_pred ccC------CCCceeEEEECC--CCCEEEEecCCCCeEEEEEEcCCCCEEEE----EEEeccCCcCCccceeC-CCCCEE
Confidence 432 245777889999 8987777653 336777777653211111 11112233335566776 899999
Q ss_pred EEEecCC-eEEEEeCCC
Q 001628 246 AVGYSNG-EILIWGVPS 261 (1042)
Q Consensus 246 ~sg~~dG-~I~iWd~~~ 261 (1042)
+++..++ .|.++.++.
T Consensus 306 iaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 306 IAANQKSDNITVFERDK 322 (346)
T ss_pred EEEccCCCcEEEEEEcC
Confidence 9988654 578887764
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=2e-05 Score=99.81 Aligned_cols=220 Identities=11% Similarity=0.059 Sum_probs=141.1
Q ss_pred ceEEEEEcCCCCEEEEEEc-CCeEEEEecCCCeEEEEecCC----------------CcceEEEEEec-CCCEEEEEeCC
Q 001628 40 GCNKFAYDPLQKILAAATK-DGRIKLYGRHNNTQALLESSE----------------AVSTKFLQFLE-NQGILLNVTST 101 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~-dg~I~iw~~~g~~~~~~~~~~----------------~~~v~~l~fs~-~~~~Lvs~s~d 101 (1042)
.+..+++++++..|.++.. ++.|++++..++...++.+.. -..-..++|+| ++..+++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3678999999887777654 478999998645544443210 01224689999 55566777788
Q ss_pred CCEEEEEcCCCceeeeeec---------------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeee-ec
Q 001628 102 NLIEVWDIDKKRLSHVHVC---------------KEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKY-II 164 (1042)
Q Consensus 102 g~I~vWd~~~~~~~~~~~h---------------~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~-~i 164 (1042)
+.|++||..++.+..+.+. -...+.++++|++++|++++ .++.|++||+.++......... ..
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765433211 12346799999998776665 5689999999876421111000 00
Q ss_pred cc-ccccCcc-----ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccc-----ccccccCCcee
Q 001628 165 PL-SASHGNE-----VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL-----QSVYHETKQVT 233 (1042)
Q Consensus 165 p~-~~~~~~~-----~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~-----~~~~~~~~~I~ 233 (1042)
+. ....|.. ...-....++++.| +++.+++-+.++.|++||..++......+.... ......-....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00 0011100 00011345788998 888878888899999999998776544321100 01122234567
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 234 SACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 234 ~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.++++ ++|..+++-+.++.|++||+.++
T Consensus 863 GIavd-~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 863 GLALG-ENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEEe-CCCCEEEEECCCCEEEEEECCCC
Confidence 88898 89999999999999999999874
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.52 E-value=7.9e-06 Score=81.19 Aligned_cols=199 Identities=9% Similarity=-0.025 Sum_probs=134.2
Q ss_pred EEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--eee--eeecCCCeEEE
Q 001628 52 ILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LSH--VHVCKEEITSF 127 (1042)
Q Consensus 52 ~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~~--~~~h~~~It~v 127 (1042)
-|.+++.|.++++.+++++......+.....+.++.+++++++++++++.+.|..|.++... +.. ....++.=.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 35667778888888877543333333333557889999999999999999999999988754 322 33344556788
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEe
Q 001628 128 TIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWD 207 (1042)
Q Consensus 128 ~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd 207 (1042)
.|+.....+|++.+||++.|||+..... |..... .....|.+++..+.|+|..--..|+..-.-+.+.|-|
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-----pm~~~s----strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMAT-----PMAEIS----STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEeccccc-----chhhhc----ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 8999999999999999999999987541 111101 1123478999999999842234555555667889999
Q ss_pred ccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 208 IRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+++++....+-...-.........|...+|+ .++..+.+...+ .+.-|++.+
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~-~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFN-NENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cccCceeeEEecCcccccccccccccccccc-CCCcccccccch-hhheeeccc
Confidence 9997754443111111222334458888887 677766666655 466677765
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=6.7e-07 Score=96.37 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=140.8
Q ss_pred eeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC------C--CeEEEEecCCCcceEEEEEecCCCEEEEEeCC
Q 001628 30 RLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH------N--NTQALLESSEAVSTKFLQFLENQGILLNVTST 101 (1042)
Q Consensus 30 ~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~------g--~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d 101 (1042)
|...--||..+|.+++--.+.+-.++++.|.+|++|... | ..+.+++.|. .+|..+.|..+-+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-k~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-KPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc-Ccccceeeeeccceeee--cc
Confidence 344446999999888766666777899999999999875 1 2444555554 78999999999877775 48
Q ss_pred CCEEEEEcCCCceee-ee-----ecCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEccCCccceeeeeeecccccccCccc
Q 001628 102 NLIEVWDIDKKRLSH-VH-----VCKEEITSFTIMQHSNYMLLG-DTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEV 174 (1042)
Q Consensus 102 g~I~vWd~~~~~~~~-~~-----~h~~~It~v~~sp~~~~l~sg-~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~ 174 (1042)
+-|.+||.--+++.. .. +..+.|.|+.- -+...+..| +...+|+++|...... .. ..++ ....
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~--~~-E~kV------cna~ 873 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEW--TC-ELKV------CNAP 873 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeecccccc--ee-eEEe------ccCC
Confidence 899999987776332 21 12244555321 234455555 6788999999887651 11 1111 0112
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeE
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEI 254 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I 254 (1042)
.+.+-+.+++..| .|+.++.+-.+|.|.+.|.++|+++..+ ..-.-....++ .|..+.++....|.++
T Consensus 874 ~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINsw--------rpmecdllqla--apsdq~L~~saldHsl 941 (1034)
T KOG4190|consen 874 GPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSW--------RPMECDLLQLA--APSDQALAQSALDHSL 941 (1034)
T ss_pred CCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccC--------Ccccchhhhhc--CchhHHHHhhccccee
Confidence 3456788999999 8999999999999999999998766543 22222333332 2667777777778888
Q ss_pred EE-EeCCCc
Q 001628 255 LI-WGVPSI 262 (1042)
Q Consensus 255 ~i-Wd~~~~ 262 (1042)
.+ |-..++
T Consensus 942 aVnWhaldg 950 (1034)
T KOG4190|consen 942 AVNWHALDG 950 (1034)
T ss_pred EeeehhcCC
Confidence 77 766553
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.48 E-value=1.2e-05 Score=81.14 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=132.8
Q ss_pred CEEEEEEc------------CCeEEEEecCC-C--eEEEEecCCCcceEEEEEec---CCC-EEEEEeCCCCEEEEEcCC
Q 001628 51 KILAAATK------------DGRIKLYGRHN-N--TQALLESSEAVSTKFLQFLE---NQG-ILLNVTSTNLIEVWDIDK 111 (1042)
Q Consensus 51 ~~LA~gs~------------dg~I~iw~~~g-~--~~~~~~~~~~~~v~~l~fs~---~~~-~Lvs~s~dg~I~vWd~~~ 111 (1042)
.+||+|+. .|.+.+|+... + ...+++......+..|.|.- ++. .|+-+..+|.|.++..+.
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 37777763 47888998762 1 12233333345566677763 333 466777889999997665
Q ss_pred Cc-eeeeeecC---C---CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 112 KR-LSHVHVCK---E---EITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 112 ~~-~~~~~~h~---~---~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
.. ...+.+.. - ...++.|++.+.-++++..+|.+.+.+..... +.... . -..|+..+.-..
T Consensus 105 ~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq-~---------wk~He~E~Wta~ 172 (339)
T KOG0280|consen 105 DESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQ-T---------WKVHEFEAWTAK 172 (339)
T ss_pred ceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee--eeecc-c---------ccccceeeeeee
Confidence 43 22232222 1 24577899999999999999999976655543 11110 0 123566778888
Q ss_pred EccCCCCCeEEEEECCCeEEEEecc-CCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 185 PQPTAESKRILIIFRDGLISLWDIR-ESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~dg~I~vWd~~-~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
|+-. +++.+.+|+.|+.+..||++ .+..++. ....|...|.++.-++|.+.++++|+.|-.|++||.+..
T Consensus 173 f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~-------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 173 FSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWH-------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cccC-CCceEEecCCCceEEEEEecCCcceeee-------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 8876 78999999999999999999 3333332 125688899999888788999999999999999999863
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=1.5e-06 Score=85.87 Aligned_cols=210 Identities=12% Similarity=0.155 Sum_probs=126.2
Q ss_pred CcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceE-----EEEEecCCCEEEEE--
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTK-----FLQFLENQGILLNV-- 98 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~-----~l~fs~~~~~Lvs~-- 98 (1042)
..++..++.+ +...-.+-+.+-.+..+++|..||.+.+++.+ +.... .++.++. +.++...+..+.++
T Consensus 78 ~i~~~~~~a~-~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~-~~~~~---~~~i~~~~~~~as~~~~~~~~~i~s~~~ 152 (319)
T KOG4714|consen 78 GIDPFKVLAK-NSEIDPNDACTMTDNRVCIGYADGSLAVFSTD-KDLAL---MSRIPSIHSGSASRKICRHGNSILSGGC 152 (319)
T ss_pred CcCceeeeec-cCCCCCcccccccCCceEecCCCceEEEEech-HHHhh---hhhcccccccccccceeecccEEecCCc
Confidence 3555555552 22222333444556779999999999999987 42221 1111111 12222333333332
Q ss_pred ---eCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc
Q 001628 99 ---TSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 99 ---s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
-.-+..+.|+++... +.........|++++-+|.- +.+++|++||.+-+||.+... +|... .
T Consensus 153 g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~--------l 219 (319)
T KOG4714|consen 153 GNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSL--------L 219 (319)
T ss_pred ceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHH--------H
Confidence 223456777776655 22222223449999999876 567789999999999998864 22111 2
Q ss_pred ccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEe----------CCcccc-------cccccCCceeEEE
Q 001628 174 VSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSM----------GGNVLQ-------SVYHETKQVTSAC 236 (1042)
Q Consensus 174 ~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~----------~g~~~~-------~~~~~~~~I~~l~ 236 (1042)
..|+.++..+-|||. ++..|+++++||.+.-||..+.- +..- .|...+ .+......|.++.
T Consensus 220 ~ahk~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~~~-l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 220 KAHKAEIWEVHFHPK-NPEHLFTCSEDGSLWHWDASTTF-LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD 297 (319)
T ss_pred HHhhhhhhheeccCC-CchheeEecCCCcEEEEcCCCce-EEecCccccccccccCCcccceEeeeccccccceeeeeee
Confidence 346789999999997 99999999999999999988522 1110 011100 0112223344433
Q ss_pred EEccCCCEEEEEecCCeEEEEe
Q 001628 237 WACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
--|..|++|+.-+.|++.+
T Consensus 298 ---V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 ---VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---ccCceEEeccccceEEEec
Confidence 3488999999998888864
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=0.00014 Score=79.49 Aligned_cols=165 Identities=9% Similarity=0.157 Sum_probs=99.8
Q ss_pred EEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeC
Q 001628 62 IKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDT 141 (1042)
Q Consensus 62 I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~ 141 (1042)
...|+..++.-..+.....=.-+.+.|||-|.||++.-..| |.+|--.+-....-..|++ |.-+.|||..+||++=+.
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~ 269 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSP 269 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecC
Confidence 34576653222222222223445689999999999986644 7889655444444455775 888999999999998542
Q ss_pred -----------CCcEEEEEccCCccceeeeeeecccccccCccccCCCCE-EEEEEccCCCCCeEEEEECCCeEEEEecc
Q 001628 142 -----------AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV-INILPQPTAESKRILIIFRDGLISLWDIR 209 (1042)
Q Consensus 142 -----------dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V-~~v~~~p~~d~~~lls~~~dg~I~vWd~~ 209 (1042)
...++|||+.++... ..+.++.. .-.+ --+.|+- |..+++.-.. ..|.|++..
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~lk---rsF~~~~~---------~~~~WP~frWS~--DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLLK---RSFPVIKS---------PYLKWPIFRWSH--DDKYFARMTG-NSISIYETP 334 (698)
T ss_pred CccccCcccCCCceEEEEEccccchh---cceeccCC---------CccccceEEecc--CCceeEEecc-ceEEEEecC
Confidence 248999999998631 11221100 1111 1257887 8888887776 456688766
Q ss_pred CCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 210 ESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 210 ~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+-..+ .++ ...-..|....|+ |.+.. |..|...+
T Consensus 335 sf~ll---d~K-----slki~gIr~Fsws-P~~~l---------lAYwtpe~ 368 (698)
T KOG2314|consen 335 SFMLL---DKK-----SLKISGIRDFSWS-PTSNL---------LAYWTPET 368 (698)
T ss_pred ceeee---ccc-----ccCCccccCcccC-CCcce---------EEEEcccc
Confidence 52111 111 2334678888997 77554 55676554
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=4.2e-05 Score=77.72 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=114.4
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecC------CCcceEEEEEecCC------CEEEEEeCCCCEEEEEc
Q 001628 42 NKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESS------EAVSTKFLQFLENQ------GILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~------~~~~v~~l~fs~~~------~~Lvs~s~dg~I~vWd~ 109 (1042)
.-++|+||+.+||.+.+.|+|++||..|.....+... -...|..|.|.+.. ..|++...+|.++=+-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 4599999999999999999999999986555544422 23467778887643 14777778888877775
Q ss_pred CCC---cee---ee---eecCCCeEEEEEeCCCCEEEEEeC----CC-------cEEEEEccCCccceeeee--------
Q 001628 110 DKK---RLS---HV---HVCKEEITSFTIMQHSNYMLLGDT----AG-------KISVLKLDQESSQIVKMK-------- 161 (1042)
Q Consensus 110 ~~~---~~~---~~---~~h~~~It~v~~sp~~~~l~sg~~----dG-------~I~vwd~~~~~~~~~~~~-------- 161 (1042)
..+ ... .+ ..++..|+++.++|..++|++|+. ++ -+..|++-.+.-......
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITA 206 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccc
Confidence 332 211 11 125778999999999999988863 21 366777644321000000
Q ss_pred -------eecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEE
Q 001628 162 -------YIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFS 216 (1042)
Q Consensus 162 -------~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~ 216 (1042)
.+++....+.+.......|..|..+| |+..|++...+|.|.+|++-+-+....
T Consensus 207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP--dg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP--DGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred cccccceeeccceeeeeccccCCCceEEEEECC--CCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 00110000000122356899999999 999999999999999999987554433
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.38 E-value=8e-06 Score=80.90 Aligned_cols=195 Identities=17% Similarity=0.241 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecC------------C-CeEEEEe-cCCCcceEEEEEecCCCEEEEEeCCCCEEE
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRH------------N-NTQALLE-SSEAVSTKFLQFLENQGILLNVTSTNLIEV 106 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~------------g-~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~v 106 (1042)
++.+.+..+. .|+++..++.+..++.. + +....+. +....+..++..- +..++++..||.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~--~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT--DNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc--CCceEecCCCceEEE
Confidence 6666665543 46777777666655443 1 2222333 2223333333222 335999999999999
Q ss_pred EEcCCCc-e-eeee-ecCCCeEEEEEeCCCCEEEEEe-----CCCcEEEEEccCCccceeeeeeecccccccCccccCCC
Q 001628 107 WDIDKKR-L-SHVH-VCKEEITSFTIMQHSNYMLLGD-----TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDP 178 (1042)
Q Consensus 107 Wd~~~~~-~-~~~~-~h~~~It~v~~sp~~~~l~sg~-----~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 178 (1042)
.+.+.-. + .... .|.+ -.+......++++.++. .-+..+.|+++.... .+|... ...
T Consensus 116 ~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t-------~~~~~~-------~~~ 180 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT-------LIPSKK-------ALD 180 (319)
T ss_pred EechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccc-------cccccc-------ccc
Confidence 9877621 0 0000 0111 11122334445554432 123455566554331 111111 123
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEe
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd 258 (1042)
.|.+++-+|. ..+.+++|+.||.+.+||++... .....+..|+.+|+.+-|++.++..|.+++.||.+..||
T Consensus 181 ~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 181 AVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cchhhhCCcc-cccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 5999999995 66778899999999999999853 223456889999999999978899999999999999999
Q ss_pred CCC
Q 001628 259 VPS 261 (1042)
Q Consensus 259 ~~~ 261 (1042)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 885
No 293
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=2.2e-05 Score=90.24 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=100.8
Q ss_pred cCceEEEEEcCCCCEEEEEEc-CC----eEEEEecC----CCeEEEEecCCCcceEEEEEecCCCEEEEEeC-CCCEEEE
Q 001628 38 PSGCNKFAYDPLQKILAAATK-DG----RIKLYGRH----NNTQALLESSEAVSTKFLQFLENQGILLNVTS-TNLIEVW 107 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~-dg----~I~iw~~~----g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~-dg~I~vW 107 (1042)
++.....+|+|||+.||.... +| .+.+|+.. |....+..... .......|+|||+.|+..+. +|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~-~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF-GTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC-CCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 344566899999999988664 23 33446654 12333332221 23345789999998887763 5654555
Q ss_pred --EcCC--CceeeeeecCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCCccceeeeeeecccccccCccccCCCCE
Q 001628 108 --DIDK--KRLSHVHVCKEEITSFTIMQHSNYMLLGDTA---GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV 180 (1042)
Q Consensus 108 --d~~~--~~~~~~~~h~~~It~v~~sp~~~~l~sg~~d---G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V 180 (1042)
++.. +....+..+...+....|+|++++|+....+ ..|.+||+.+++. ..+. .....+
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt-------------~~~~~~ 373 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLT-------------TSPENK 373 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEcc-------------CCCCCc
Confidence 4442 3344454455677889999999988866543 3699999988762 1111 012245
Q ss_pred EEEEEccCCCCCeEEEEEC---CCeEEEEeccCCeeE
Q 001628 181 INILPQPTAESKRILIIFR---DGLISLWDIRESKSI 214 (1042)
Q Consensus 181 ~~v~~~p~~d~~~lls~~~---dg~I~vWd~~~~~~~ 214 (1042)
....|+| |+..|+.... ...|.+||+.+++..
T Consensus 374 ~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 374 ESPSWAI--DSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred cceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6689999 8888875543 356888898876643
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-05 Score=84.91 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=114.6
Q ss_pred EEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcc--cccceee
Q 001628 464 TGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA--IENSFLS 541 (1042)
Q Consensus 464 tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~--~~~~~~~ 541 (1042)
+.-.+|.|.++|-....+...+.- ..|..+|.++.+.+.+..+++....|+|.-|.....-.. .+..|.
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fk--------klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~- 187 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFK--------KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE- 187 (558)
T ss_pred ecccCCCcEEECCcCCcCccceec--------ccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc-
Confidence 345567788888766544433322 568899999999999999999999999999998741111 111121
Q ss_pred ecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--Eecccccc--------------
Q 001628 542 FTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASD-------------- 605 (1042)
Q Consensus 542 ~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~-------------- 605 (1042)
..|.--.+.+...++..+++.|+|++..+++-..|..|++++..++.++ +.......
T Consensus 188 -------~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 188 -------LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred -------ccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 1222111334455688899999999999999999999999999888765 21111110
Q ss_pred -------------cC-CCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 606 -------------IS-SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 606 -------------~~-~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
|. ..-+.+.|.. ++++|+-|+-=| |.|.++.|+.++.+.
T Consensus 261 lgRRmaverelek~~~~~~~~~~fde------s~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 261 LGRRMAVERELEKHGSTVGTNAVFDE------SGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhHHhhHhhhcCcccceeEEcC------CCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 11 1344556665 789999999776 899999999988776
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=4.1e-05 Score=88.14 Aligned_cols=196 Identities=14% Similarity=0.236 Sum_probs=130.3
Q ss_pred EEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCC-----EEEEEcCCCc----ee
Q 001628 45 AYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNL-----IEVWDIDKKR----LS 115 (1042)
Q Consensus 45 a~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~-----I~vWd~~~~~----~~ 115 (1042)
+|++.+..+|.|+.+|.|.+.+..=....-+.......|..|....+..+|++.+.|.+ |+||+++.-. +.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 46899999999999999999987622325555555445665655566679999988765 8999986531 22
Q ss_pred ee-----eec-----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 116 HV-----HVC-----KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 116 ~~-----~~h-----~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
.+ ..| +.++++++++.+-+.+|+|-.||.|..+.-+-....-.+..+ ......+|+++.+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~----------~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY----------SHRGKEPITGLAL 179 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee----------eccCCCCceeeEE
Confidence 22 222 367899999999999999999999999974432210111111 1223579999999
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.- ++.-++-+..-..|.+|.+.. +. ........+...+.|.+++ +....|++++.. -+.+|+.+.
T Consensus 180 ~~--d~~s~lFv~Tt~~V~~y~l~g-r~------p~~~~ld~~G~~lnCss~~-~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 180 RS--DGKSVLFVATTEQVMLYSLSG-RT------PSLKVLDNNGISLNCSSFS-DGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred ec--CCceeEEEEecceeEEEEecC-CC------cceeeeccCCccceeeecC-CCCccEEEecCc-eEEEEcCCC
Confidence 87 666533333445566888873 31 1123346677788888886 333335655544 589998875
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00012 Score=83.51 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=118.8
Q ss_pred ceEEEEEcCCCCE-EEEEEcC---CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEE-eCC--CCEEEEEcCCC
Q 001628 40 GCNKFAYDPLQKI-LAAATKD---GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNV-TST--NLIEVWDIDKK 112 (1042)
Q Consensus 40 ~v~~la~sp~~~~-LA~gs~d---g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~-s~d--g~I~vWd~~~~ 112 (1042)
....-+|+|+++. ++..+.+ ..|++++..++....+.. .........|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678999999984 7765444 568888887433333322 22344557899999877654 333 46888898888
Q ss_pred ceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 113 RLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 113 ~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
....+..+.+....-.|+|||+.|+..+. .| .|+++|++++.. .++.+ .+ . ....|+|
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~-------~g-------~-~~~~~SP-- 328 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVF-------HG-------K-NNSSVST-- 328 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCcc-------CC-------C-cCceECC--
Confidence 86666655554456679999987776653 33 677778877652 11110 00 1 1238999
Q ss_pred CCCeEEEEECC---------CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC---eEEEE
Q 001628 190 ESKRILIIFRD---------GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG---EILIW 257 (1042)
Q Consensus 190 d~~~lls~~~d---------g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG---~I~iW 257 (1042)
++.+|+..... ..|.+.|+.++..... ... .......|+ |||..++....++ .|.+.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L---------T~~-~~~~~p~~S-PDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL---------TAN-GVNQFPRFS-SDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC---------CCC-CCcCCeEEC-CCCCEEEEEEccCCcEEEEEE
Confidence 89988777643 3677888877653221 111 122347898 9999887766432 24455
Q ss_pred eCCC
Q 001628 258 GVPS 261 (1042)
Q Consensus 258 d~~~ 261 (1042)
++..
T Consensus 398 ~l~g 401 (419)
T PRK04043 398 RLNY 401 (419)
T ss_pred ecCC
Confidence 5543
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.30 E-value=4e-06 Score=84.69 Aligned_cols=214 Identities=18% Similarity=0.263 Sum_probs=139.1
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCC--CeE----EEEecCC-----------CcceEEEEEecCCC--EEEEEe
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHN--NTQ----ALLESSE-----------AVSTKFLQFLENQG--ILLNVT 99 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g--~~~----~~~~~~~-----------~~~v~~l~fs~~~~--~Lvs~s 99 (1042)
..|+++.|+..|.+||+|...|+|.+|.... ..+ ..|++|. ...|..+.|..+++ .++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 4689999999999999999999999998761 111 1133332 23567788877543 456667
Q ss_pred CCCCEEEEEcCCCce--------------------e------------------------eeeecCCCeEEEEEeCCCCE
Q 001628 100 STNLIEVWDIDKKRL--------------------S------------------------HVHVCKEEITSFTIMQHSNY 135 (1042)
Q Consensus 100 ~dg~I~vWd~~~~~~--------------------~------------------------~~~~h~~~It~v~~sp~~~~ 135 (1042)
.|.+|++|.+..+.+ . ....|+-.|.++.|..+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999998754310 0 01235566778888888887
Q ss_pred EEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCee--
Q 001628 136 MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKS-- 213 (1042)
Q Consensus 136 l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~-- 213 (1042)
+++++ |=.|-+|+++-...+....... |... ..-..-|++..|+|. ..+.+.-.+..|.|++-|+++...
T Consensus 187 ~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nm-----eeLteVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 187 LLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNM-----EELTEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred eeecc-ceeeeeccccccCCceEEEecc-CccH-----HHHHHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhhhcc
Confidence 77654 5679999987654322222100 0000 001236788899995 677888888999999999985321
Q ss_pred ----EEE--eCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 214 ----IFS--MGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 214 ----~~~--~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
++. ..+-...-+.+-...|..+.|+ ++|+++++-..- ++++||+...
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs-~ngryIlsRdyl-tvkiwDvnm~ 311 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFS-DNGRYILSRDYL-TVKIWDVNMA 311 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEc-CCCcEEEEeccc-eEEEEecccc
Confidence 111 0111111223345678889998 899988876554 8999999864
No 298
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.28 E-value=1.6e-05 Score=80.25 Aligned_cols=187 Identities=17% Similarity=0.147 Sum_probs=129.1
Q ss_pred EEEEEEcCCeEEEEecCCCeE-EEEecCCC--c---ceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---eeeeeecCC
Q 001628 52 ILAAATKDGRIKLYGRHNNTQ-ALLESSEA--V---STKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LSHVHVCKE 122 (1042)
Q Consensus 52 ~LA~gs~dg~I~iw~~~g~~~-~~~~~~~~--~---~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~~~~~h~~ 122 (1042)
.|+.+-..|.|.+|..++... ..+++-.. . -..++.|++.+..+++...+|.+.+-+..... ....+.|+-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 567777789999988773222 22221111 1 13457799988889999999999966655554 346778998
Q ss_pred CeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCC
Q 001628 123 EITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDG 201 (1042)
Q Consensus 123 ~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg 201 (1042)
+++-..|+... +.+++|++||.+..||+..... . ... +..-|...|.+|.-+|. .+.++++|+.|-
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~-----i~~------n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe 233 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-F-----IWH------NSKVHTSGVVSIYSSPP-KPTYIATGSYDE 233 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcc-e-----eee------cceeeecceEEEecCCC-CCceEEEecccc
Confidence 99998998655 7899999999999999983221 1 111 12335679999999985 889999999999
Q ss_pred eEEEEeccC-CeeEEEeCCcccccccccCCceeEEEEEccCCC-EEEEEecCCeEEEEeCCC
Q 001628 202 LISLWDIRE-SKSIFSMGGNVLQSVYHETKQVTSACWACPIGS-KVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 202 ~I~vWd~~~-~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~-~l~sg~~dG~I~iWd~~~ 261 (1042)
.|++||.+. +++++. ..-.+.|+.++++ |.-. .++.++.-.-.+|-+...
T Consensus 234 ~i~~~DtRnm~kPl~~---------~~v~GGVWRi~~~-p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 234 CIRVLDTRNMGKPLFK---------AKVGGGVWRIKHH-PEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ceeeeehhcccCcccc---------CccccceEEEEec-chhhhHHHHHHHhcCceEEEecc
Confidence 999999984 555553 2334889999998 5432 333333333356666654
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=6.2e-06 Score=84.80 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=124.8
Q ss_pred ecccCceEEEEEcCC--CCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 001628 35 YGFPSGCNKFAYDPL--QKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKK 112 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~--~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~ 112 (1042)
+-+|..-.| ||+-. +-..++|. +-.|-+-+..++....|. ....|-+++|...++.+..|+.+|.|.+.|++.+
T Consensus 209 lQi~~a~~C-awSlni~gyhfs~G~-sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 209 LQIPKAWSC-AWSLNIMGYHFSVGL-SQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred ecCCcchhh-hhhhccceeeecccc-cceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeec
Confidence 334444444 66532 22334444 456888888866776666 3456778999998899999999999999999876
Q ss_pred c-----eeeeeecCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 113 R-----LSHVHVCKEEITSFTIMQ-HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 113 ~-----~~~~~~h~~~It~v~~sp-~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
. ......|+..|||+..-. ++++|.+.+.+|.|.+||+.--++....+.|. ||.. ...-.-+..+
T Consensus 285 nqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-------GHvN--~~a~l~~~v~ 355 (425)
T KOG2695|consen 285 NQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-------GHVN--LSAYLPAHVK 355 (425)
T ss_pred ccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-------cccc--cccccccccc
Confidence 2 667778999999998877 88999999999999999987655422222221 1100 0011112334
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA 238 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~ 238 (1042)
| ....+++++.|...+||.++.+..+.... ......+..+.+++|.
T Consensus 356 ~--eeg~I~s~GdDcytRiWsl~~ghLl~tip----f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 356 E--EEGSIFSVGDDCYTRIWSLDSGHLLCTIP----FPYSASEVDIPSVAFD 401 (425)
T ss_pred c--ccceEEEccCeeEEEEEecccCceeeccC----CCCccccccccceehh
Confidence 4 56678889999999999999988766531 1112233455566554
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=4.4e-05 Score=87.38 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=133.7
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeee
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVH 118 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~ 118 (1042)
..++|++++ .+.+|.|+.+|.|++++.+|+. .....+... ..+|.++++++.||.|.|-.+.+.+..+..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 467888887 5799999999999999999665 332222211 567899999999999999999998877777
Q ss_pred ecCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 119 VCKEEITSFTIMQH-----SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 119 ~h~~~It~v~~sp~-----~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
....++.+++++|+ .+.+++|+..| +.++.-.-.. +..+. . .....++|.++.|. |++
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-------nk~~v-~----l~~~eG~I~~i~W~----g~l 172 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-------NKDSV-V----LSEGEGPIHSIKWR----GNL 172 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-------Cccce-e----eecCccceEEEEec----CcE
Confidence 78889999999998 47889999999 6665421111 11100 0 12346899999997 565
Q ss_pred EEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 194 ILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++=+..+| |+|||..+++.+....... .......--..++|. +...|+.|-.| +|++..+..
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~--~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQ--DEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEec--CCCeEEEecCC-eEEEEEEec
Confidence 66555555 6799999988766532111 111122334468896 67777888777 789988873
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.14 E-value=9.4e-06 Score=91.07 Aligned_cols=211 Identities=11% Similarity=0.163 Sum_probs=140.6
Q ss_pred eeeeecccCceEEEEEcCCCC-EEEEEEcCCeEEEEecCC--CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE
Q 001628 31 LVFHYGFPSGCNKFAYDPLQK-ILAAATKDGRIKLYGRHN--NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 31 ~~~~~G~~~~v~~la~sp~~~-~LA~gs~dg~I~iw~~~g--~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
....|||...|+.+-|+|..+ .||+++.|-.|..||... .....+..-+ ..-..+.|+.....+.+.+..+.|.||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcchhhhccCCceEEE
Confidence 455689999999999999764 899999999999999872 2222333333 223348888766667777888999999
Q ss_pred EcCCCc--eeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 108 DIDKKR--LSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 108 d~~~~~--~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
|+..+. +..+++|-..|..++|...- ..+.+.+.||+|+.||.+.... ...+.++ ...+|.--.
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~---e~~~~vt----------t~~piw~~r 252 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT---ESKRTVT----------TNFPIWRGR 252 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc---ccceecc----------ccCcceecc
Confidence 999887 77888898899999887654 5678899999999999887531 1112221 122333333
Q ss_pred EccCC---------CCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC---------CCEEE
Q 001628 185 PQPTA---------ESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI---------GSKVA 246 (1042)
Q Consensus 185 ~~p~~---------d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~---------g~~l~ 246 (1042)
+-|.. .++.+..--.++....|+..++. ..+..+.+|...|....|-+.. .-.|+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-------~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-------TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCC-------cceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence 44421 22222222233334455554421 2234457888888877776321 12689
Q ss_pred EEecCCeEEEEeCCCc
Q 001628 247 VGYSNGEILIWGVPSI 262 (1042)
Q Consensus 247 sg~~dG~I~iWd~~~~ 262 (1042)
|=+.|.++++|-+.+.
T Consensus 326 TWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EeecCCceEeeeccHH
Confidence 9999999999998763
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.1e-05 Score=87.23 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=113.1
Q ss_pred CCCccEEEEEeCCCcEEEEeCCCCcee---eeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCC
Q 001628 456 SKVKNLFITGHSDGAINFWDVSCPLFL---LILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEP 532 (1042)
Q Consensus 456 ~~~~~~l~tg~~Dg~IriWd~~~~~~~---~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~ 532 (1042)
-.+.+-+++++.|.+|++|.+...--. .-.+ -....|..+|.++.|-.+.++++ +.||-+.+||.-...
T Consensus 744 idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ------fTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr 815 (1034)
T KOG4190|consen 744 IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ------FTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGR 815 (1034)
T ss_pred cccccceeeccCCceEEEEEeccccCccccceee------eEhhhccCcccceeeeeccceee--eccCcceeecccccc
Confidence 346678999999999999998743100 0000 11268899999999999998887 457889999975443
Q ss_pred cccccceeeecccccCccceeeeEEEeecCCCeEEEEEec--CCcEE-EEEecCCcEEEEeccCCeEE--EecccccccC
Q 001628 533 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR--NSQHL-AVGSDQGYVYLLDTEGPTVL--YQKHIASDIS 607 (1042)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp--dg~~L-a~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~ 607 (1042)
....+.. . ..+ +.++.+.+-+ +...| |.++...+|+++|.+.+... ++..-..+..
T Consensus 816 ~Laq~~d----a----pk~-----------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 816 LLAQMED----A----PKE-----------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred hhHhhhc----C----ccc-----------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 3221111 0 111 3333333333 33444 44488999999999988776 4444344445
Q ss_pred CCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 608 SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 608 ~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
.-+.+++..+ .|++|+.+-..|+|.+.|.++|++|...
T Consensus 877 a~~R~iaVa~------~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 877 ALTRAIAVAD------KGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred hheeEEEecc------CcchhhHHhcCCcEEEEecCCCceeccC
Confidence 6789999998 9999999999999999999999998643
No 303
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.11 E-value=0.05 Score=64.74 Aligned_cols=137 Identities=10% Similarity=0.078 Sum_probs=81.2
Q ss_pred EEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee--eecCCCeEEEEEeCCC------
Q 001628 62 IKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV--HVCKEEITSFTIMQHS------ 133 (1042)
Q Consensus 62 I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~--~~h~~~It~v~~sp~~------ 133 (1042)
|++++.. .....+..+.+..+ ...+.+...++.++.++.+...++....+... ...+..|.|+.++|-+
T Consensus 472 iRl~ss~-~~~~~W~~p~~~ti--~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s 548 (1096)
T KOG1897|consen 472 IRLVSSA-GLRSEWRPPGKITI--GVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKS 548 (1096)
T ss_pred EEEEcch-hhhhcccCCCceEE--EEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcc
Confidence 6777666 33334444443333 33334444677777778887777776664333 3456889999999764
Q ss_pred CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe
Q 001628 134 NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESK 212 (1042)
Q Consensus 134 ~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~ 212 (1042)
+++++|..+..+.+.-........... .++. ..-+..|.-..+-- |.++|+++..||.+.-+.++.+.
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~~--~l~~-------~~iPRSIl~~~~e~--d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILITHE--QLSG-------EIIPRSILLTTFEG--DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceeeee--ccCC-------CccchheeeEEeec--cceEEEEEcCCceEEEEEEEccc
Confidence 389999887766655443322101100 0000 01123555566665 68999999999999766555443
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.11 E-value=0.0023 Score=73.29 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=79.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccce
Q 001628 460 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSF 539 (1042)
Q Consensus 460 ~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~ 539 (1042)
+.++.++.+|.+.-+|..++...-...+ .....+. ..+..+++++.+|.+..++..+....-....
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~------------~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREY------------GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecC------------CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 3555667789999999888753211111 1111122 2456677778888888888765433110000
Q ss_pred eeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEE-EEEEee
Q 001628 540 LSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS-LQFETC 618 (1042)
Q Consensus 540 ~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~s-l~fs~~ 618 (1042)
..+ ....+..+. +.+|.+++.||.|+++|..+++++.+..... ..+.+ ..+
T Consensus 323 ---------~~~-----------~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~---~~~~s~P~~--- 374 (394)
T PRK11138 323 ---------LLH-----------RLLTAPVLY--NGYLVVGDSEGYLHWINREDGRFVAQQKVDS---SGFLSEPVV--- 374 (394)
T ss_pred ---------cCC-----------CcccCCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---CcceeCCEE---
Confidence 000 111112222 5778889999999999999999986555421 12221 112
Q ss_pred ecCCCCceEEEEEeCCceEEEEEC
Q 001628 619 SLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 619 ~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
.+..|++++.||.|+.++.
T Consensus 375 -----~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 -----ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -----ECCEEEEEeCCceEEEEeC
Confidence 2457888999999998874
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=3.1e-05 Score=79.87 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=110.4
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeee
Q 001628 463 ITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSF 542 (1042)
Q Consensus 463 ~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~ 542 (1042)
++.+.+..|-+-|+.++... . -.....|.++.|...+.++..|..+|.|..+|+.....-
T Consensus 228 fs~G~sqqv~L~nvetg~~q-----------s-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG-------- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-----------S-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG-------- 287 (425)
T ss_pred ecccccceeEEEEeeccccc-----------c-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC--------
Confidence 44455666778888776321 1 124578999999999999999999999999999864221
Q ss_pred cccccCccceeeeEEEeecCCCeEEEEEec-CCcEEEEEecCCcEEEEeccCCe----EE-EecccccccCCCeEEEEEE
Q 001628 543 TGSKKGNSHIIHSVKVMKINGSIISLNMNR-NSQHLAVGSDQGYVYLLDTEGPT----VL-YQKHIASDISSGIVSLQFE 616 (1042)
Q Consensus 543 ~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp-dg~~La~gs~dg~V~vwD~~~~~----~~-~~~~~~~~~~~~V~sl~fs 616 (1042)
..-. +....|+..|++|..-. ++.+|.+.+.+|.|.+||.+--+ +. |.+|.. ..+..
T Consensus 288 ------~~~~---a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--------~~a~l 350 (425)
T KOG2695|consen 288 ------NGWC---AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--------LSAYL 350 (425)
T ss_pred ------CCcc---eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--------ccccc
Confidence 1111 34456779999998776 68999999999999999997432 32 666643 22222
Q ss_pred eeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecC
Q 001628 617 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 654 (1042)
Q Consensus 617 ~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~ 654 (1042)
|...++ ....+++++.|...++|.+.+|.++.+.+..
T Consensus 351 ~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccc-ccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 222221 5677888999999999999999999887644
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.08 E-value=0.0043 Score=71.14 Aligned_cols=154 Identities=13% Similarity=0.192 Sum_probs=87.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCC-CCeEEEEEeC--CCCEEEEEeccceEEEEEeccCCccccc
Q 001628 461 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDG--TSRVLVSGDQSGMVRIFKLKYEPHAIEN 537 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~-~~V~~l~fsp--~~~~Lasg~~dG~V~vw~~~~~~~~~~~ 537 (1042)
.++.+..+|.+..+|..++...-.+.+... . ..+. .....+..+| .+..+++++.+|.+..++......
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~--~--~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---- 278 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQP--T--GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---- 278 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccC--C--CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----
Confidence 455577788888888777643221111000 0 0000 0001111111 245666677888888888765433
Q ss_pred ceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEe
Q 001628 538 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 617 (1042)
Q Consensus 538 ~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~ 617 (1042)
.+ .... +....+.. ++..|.+++.+|.|..+|..+++.+++...... ....+...
T Consensus 279 ~W---------~~~~----------~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v-- 333 (394)
T PRK11138 279 VW---------KREY----------GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVL-- 333 (394)
T ss_pred EE---------eecC----------CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEE--
Confidence 11 1111 11112222 467788888999999999999988865442210 01112222
Q ss_pred eecCCCCceEEEEEeCCceEEEEECCCCceeeeeec
Q 001628 618 CSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 653 (1042)
Q Consensus 618 ~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~ 653 (1042)
.+.+|+.++.||.|.++|..+|+.+....+
T Consensus 334 ------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 334 ------YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ------ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 256788899999999999999999877654
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.07 E-value=0.0015 Score=78.58 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=127.5
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCe--EEEEecC--CCeE----EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGR--IKLYGRH--NNTQ----ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~--I~iw~~~--g~~~----~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~ 109 (1042)
++..-++.++|.....|+++..+. +..+... +.+. .....+....|.++.|..++..++.+..+|.|.+-|.
T Consensus 18 ~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~ 97 (1265)
T KOG1920|consen 18 PGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDP 97 (1265)
T ss_pred CCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcc
Confidence 334566777777777777643322 2223322 1211 1111223357888999999999999999999999999
Q ss_pred CCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeee---------eeeccccc----ccCcc---
Q 001628 110 DKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKM---------KYIIPLSA----SHGNE--- 173 (1042)
Q Consensus 110 ~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~---------~~~ip~~~----~~~~~--- 173 (1042)
++......-.....|.+++|+||.++++..+..+++.+-.-+=..+....+ ...+.|-. -+|..
T Consensus 98 et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 98 ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhh
Confidence 988877777788899999999999999999998888776531110000000 00010100 00000
Q ss_pred ---------c--c---CCCCEEEEEEccCCCCCeEEEEE----CC-CeEEEEeccCCeeEEEeCCcccccccccCCceeE
Q 001628 174 ---------V--S---GDPAVINILPQPTAESKRILIIF----RD-GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTS 234 (1042)
Q Consensus 174 ---------~--~---~~~~V~~v~~~p~~d~~~lls~~----~d-g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~ 234 (1042)
. . -...=++|.|.- ||.++++.+ .+ ..|+|||-+ |..-. +.......=.+
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns--------~se~~~~l~~~ 246 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIRVYDRE-GALNS--------TSEPVEGLQHS 246 (1265)
T ss_pred cccccccccccccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEEEeccc-chhhc--------ccCcccccccc
Confidence 0 0 111233588887 898888844 33 789999987 32111 11222334457
Q ss_pred EEEEccCCCEEEEEec---CCeEEEEeCCC
Q 001628 235 ACWACPIGSKVAVGYS---NGEILIWGVPS 261 (1042)
Q Consensus 235 l~~~~~~g~~l~sg~~---dG~I~iWd~~~ 261 (1042)
++|- |.|..+++-.. |+.|.++.-+.
T Consensus 247 LsWk-Psgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 247 LSWK-PSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred eeec-CCCCeEeeeeecCCCCcEEEEecCC
Confidence 8898 89998888653 44566665443
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.07 E-value=2.7e-05 Score=78.91 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=59.6
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecc-cccccCc------cccCCCCEEEEEEccCCCCCe
Q 001628 121 KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIP-LSASHGN------EVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 121 ~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip-~~~~~~~------~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
...|+++.|...|.||++|+..|.|.+|.-..... ..|.+- ....+.. ...-...|..+.|......++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 35799999999999999999999999997554321 112110 0011100 112234788888876446678
Q ss_pred EEEEECCCeEEEEeccCC
Q 001628 194 ILIIFRDGLISLWDIRES 211 (1042)
Q Consensus 194 lls~~~dg~I~vWd~~~~ 211 (1042)
++..+.|.+|++|.+...
T Consensus 102 FLlstNdktiKlWKiyek 119 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred EEEecCCceeeeeeeecc
Confidence 999999999999998764
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.04 E-value=0.0062 Score=64.75 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=123.7
Q ss_pred EEEEEcC-CCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEe-cCCCEEEEEeCCCCEEEEEcCCCceeeeee
Q 001628 42 NKFAYDP-LQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFL-ENQGILLNVTSTNLIEVWDIDKKRLSHVHV 119 (1042)
Q Consensus 42 ~~la~sp-~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs-~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~ 119 (1042)
-+.+|++ ++.++.+-...+.|+.|+..+.....+..+. ...+.+. +++ .|+.+.. +.+.++|+.++++..+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEee
Confidence 3678998 7777777777899999999865555555444 4457777 665 5555555 455666999987544433
Q ss_pred c------CCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 120 C------KEEITSFTIMQHSNYMLLGDTA--------GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 120 h------~~~It~v~~sp~~~~l~sg~~d--------G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
. ......++++++|++.++.... |.|..++.+ .+. ...... -.....|+|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~-------------~~~pNGi~~ 141 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADG-------------LGFPNGIAF 141 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEE-------------ESSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecC-------------cccccceEE
Confidence 2 2457789999999965554432 557777766 331 111111 135678999
Q ss_pred ccCCCCCeEEE-EECCCeEEEEeccCCee-EEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILI-IFRDGLISLWDIRESKS-IFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls-~~~dg~I~vWd~~~~~~-~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+| +++.|++ -+..+.|..+++..... +... ...............+++. .+|+..++....+.|.+++...
T Consensus 142 s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 142 SP--DGKTLYVADSFNGRIWRFDLDADGGELSNR--RVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp ET--TSSEEEEEETTTTEEEEEEEETTTCCEEEE--EEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTS
T ss_pred CC--cchheeecccccceeEEEeccccccceeee--eeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCc
Confidence 99 8887764 45778888888864321 1100 0011112222347788887 8999999988999999999873
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00012 Score=82.89 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=105.8
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcc
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 534 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~ 534 (1042)
+.....+++.|+.-|.+.+|+-..+.+..+- + .+....+..+..+++..++|.|+..|.|.++.+......
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-------~--~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-------N--EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhccc-------c--cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 5566679999999999999998887543211 2 223456777788999999999999999999998763221
Q ss_pred cccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCC-eEEEecccccccCCCeEEE
Q 001628 535 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGP-TVLYQKHIASDISSGIVSL 613 (1042)
Q Consensus 535 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~-~~~~~~~~~~~~~~~V~sl 613 (1042)
. .... .+. -..|+..||+++|++|+..|.+|...|.|....+... ..++..+..-.-.+.|..|
T Consensus 112 ~-~~~~---------t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 112 D-LDYV---------TPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL 176 (726)
T ss_pred c-ceee---------ccc-----cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence 1 1110 000 0115688999999999999999999999999887762 2222222111134578888
Q ss_pred EEEeeecCCCCceEEEEEeCCceEEEEECCCCc
Q 001628 614 QFETCSLQGFEKNFLVIATKDSSVLVLDSDNGN 646 (1042)
Q Consensus 614 ~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~ 646 (1042)
.+. ++.+|++... . -.+++.+.+.
T Consensus 177 D~~-------q~~LLVStl~-r-~~Lc~tE~et 200 (726)
T KOG3621|consen 177 DYL-------QSYLLVSTLT-R-CILCQTEAET 200 (726)
T ss_pred ecc-------cceehHhhhh-h-hheeecchhH
Confidence 877 4555554443 2 3455655444
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.97 E-value=0.012 Score=66.42 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=71.3
Q ss_pred EEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccc
Q 001628 472 NFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSH 551 (1042)
Q Consensus 472 riWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~ 551 (1042)
.+|+.....++.+.... -...+.|.+.+++|+...|+.|..||.|++||........ ...
T Consensus 239 ciYE~~r~klqrvsvts-------ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-------------~ka 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTS-------IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-------------AKA 298 (545)
T ss_pred EEEEeecCceeEEEEEE-------EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-------------eee
Confidence 45666655555443221 2455789999999999999999999999999986543211 112
Q ss_pred eeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeE
Q 001628 552 IIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV 596 (1042)
Q Consensus 552 ~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~ 596 (1042)
.-..+.++|+|+|..+++|++.|.+.+||+.-..+
T Consensus 299 ----------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 299 ----------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ----------cccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 14578899999999999999999999999965444
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.95 E-value=0.015 Score=70.36 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=134.3
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcC----CCc-
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDID----KKR- 113 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~----~~~- 113 (1042)
..|.++.|.-++.-|.+++..|.|.+-|.. .......+.-...|.+++|+||+..++.++.++++.+-+-. ..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~e-t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPE-TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccc-ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 578899999999999999999999999887 55555556666889999999999999999988887765421 000
Q ss_pred e-------------------eeeee---------------------cCCCeEEEEEeCCCCEEEEE-----eCCCcEEEE
Q 001628 114 L-------------------SHVHV---------------------CKEEITSFTIMQHSNYMLLG-----DTAGKISVL 148 (1042)
Q Consensus 114 ~-------------------~~~~~---------------------h~~~It~v~~sp~~~~l~sg-----~~dG~I~vw 148 (1042)
+ ..+.+ ..+.=+.+.|--||+|+++. .....|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 01110 01122458899999999883 233699999
Q ss_pred EccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE---CCCeEEEEeccCCeeEEEeCCcccccc
Q 001628 149 KLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF---RDGLISLWDIRESKSIFSMGGNVLQSV 225 (1042)
Q Consensus 149 d~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~---~dg~I~vWd~~~~~~~~~~~g~~~~~~ 225 (1042)
|-+ +. +.... . ...+-=.+++|-| .|..+++.. +|+.|.++.-+.-+- |...-.+
T Consensus 228 drE-g~--Lns~s--e----------~~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~h-----g~f~l~~ 285 (1265)
T KOG1920|consen 228 DRE-GA--LNSTS--E----------PVEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLRH-----GEFVLPF 285 (1265)
T ss_pred ccc-ch--hhccc--C----------cccccccceeecC--CCCeEeeeeecCCCCcEEEEecCCccc-----cccccCC
Confidence 987 33 11111 0 0122334689999 788888776 456787876654220 1111112
Q ss_pred cccCCceeEEEEEccCCCEEEE---EecCCeEEEEeCCC
Q 001628 226 YHETKQVTSACWACPIGSKVAV---GYSNGEILIWGVPS 261 (1042)
Q Consensus 226 ~~~~~~I~~l~~~~~~g~~l~s---g~~dG~I~iWd~~~ 261 (1042)
.....++..++|+ .++..|++ ......|.+|-+.+
T Consensus 286 p~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 286 PLDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccchheeeec-CCCCceeeeecccccceEEEEEecC
Confidence 3344559999999 89999888 44455599998876
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0022 Score=73.42 Aligned_cols=171 Identities=8% Similarity=0.065 Sum_probs=108.8
Q ss_pred eEEEEecCCCeEEEEecCCCcceEEEEEecCCCE-EEEEeCC---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEE
Q 001628 61 RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGI-LLNVTST---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYM 136 (1042)
Q Consensus 61 ~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~-Lvs~s~d---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l 136 (1042)
.|.+=|.+|.....+.... ....-.|+|+++. ++..+.+ ..|.++|+.+++...+...++...+..|+||++.|
T Consensus 170 ~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 5666566654344343332 5667999999985 5544433 45999999999877666677777888999999877
Q ss_pred EEE-eCC--CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC-C--eEEEEeccC
Q 001628 137 LLG-DTA--GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD-G--LISLWDIRE 210 (1042)
Q Consensus 137 ~sg-~~d--G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d-g--~I~vWd~~~ 210 (1042)
+.. +.+ ..|+++++.++. ...+. . +........|+| ||..|+-.+.. + .|.+.|+.+
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~--~~~LT----~---------~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKT--LTQIT----N---------YPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEEEccCCCcEEEEEECCCCc--EEEcc----c---------CCCccCccEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 654 333 467778877765 22211 0 111223357999 89877776643 3 677888887
Q ss_pred CeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC---------CeEEEEeCCCc
Q 001628 211 SKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN---------GEILIWGVPSI 262 (1042)
Q Consensus 211 ~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d---------G~I~iWd~~~~ 262 (1042)
++..... ..+. . ...|+ |+|..|+..... ..|.+.|+.++
T Consensus 311 g~~~rlt-------~~g~--~--~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 311 GSVEQVV-------FHGK--N--NSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCeEeCc-------cCCC--c--CceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 6643321 0111 1 23797 999998877654 26777787765
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.93 E-value=3.4e-05 Score=55.15 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred EEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 556 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 556 ~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
..+..|.++|++|+|+|++.+|++|+.|+.|+|||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45667789999999999999999999999999998
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.0011 Score=74.57 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=93.5
Q ss_pred EEEEEecCC-CEEEEE----eCCCC----EEEEEcCCCcee----eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001628 84 KFLQFLENQ-GILLNV----TSTNL----IEVWDIDKKRLS----HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKL 150 (1042)
Q Consensus 84 ~~l~fs~~~-~~Lvs~----s~dg~----I~vWd~~~~~~~----~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~ 150 (1042)
.++.|+-.. ..+.++ +.+|. -++|++...++. +...++..|+|++++|+...|+.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 348888633 344443 33454 356777666533 22357789999999999999999999999999998
Q ss_pred cCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcc--------c
Q 001628 151 DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNV--------L 222 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~--------~ 222 (1042)
..+.....+. .-..+.++||| +|..+++|+..|.+.+||+.-+..-...-... +
T Consensus 289 ~~~~t~~~ka----------------~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~L 350 (545)
T PF11768_consen 289 TRGVTLLAKA----------------EFIPTLIAWHP--DGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQL 350 (545)
T ss_pred CCCeeeeeee----------------cccceEEEEcC--CCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEee
Confidence 8764212111 23677899999 99999999999999999997654322221100 1
Q ss_pred ccccccCCceeEEEEE
Q 001628 223 QSVYHETKQVTSACWA 238 (1042)
Q Consensus 223 ~~~~~~~~~I~~l~~~ 238 (1042)
.....+...+..+.|.
T Consensus 351 s~yf~~~~~L~~iqW~ 366 (545)
T PF11768_consen 351 SKYFRVSSSLVHIQWA 366 (545)
T ss_pred ehhccCcchhheeEec
Confidence 1223456677778887
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.0033 Score=65.48 Aligned_cols=213 Identities=10% Similarity=0.131 Sum_probs=117.0
Q ss_pred ecccCceEEEEEcCCCC-EEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCC-
Q 001628 35 YGFPSGCNKFAYDPLQK-ILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKK- 112 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~-~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~- 112 (1042)
-|+...++.++|+|+.+ +.|+....+.|..++.+|++...+......-.-.+++..++.++++--.++.+.+.++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 47777899999999755 6666666788988999988888877666567788999988866665545888999988432
Q ss_pred -c--eee---ee-----ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC--CccceeeeeeecccccccCccccCCCC
Q 001628 113 -R--LSH---VH-----VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ--ESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 113 -~--~~~---~~-----~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~--~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
. ... +. .+...+-.++|++.++.|+++-+..-..+|.+.. ....+. ......... .......
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~d 172 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDD----DKLFVRD 172 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-----HT--SS-
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-ecccccccc----ccceecc
Confidence 1 111 11 1234589999999999999998887777777765 111010 000000000 0111246
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCc-ccccccccCCceeEEEEEccCCCEEEEEecCCeEEE
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGN-VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILI 256 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~-~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~i 256 (1042)
+.++.++|. .++.++.......|..+| .+|+.+..+.-. ....+...-.+--.+++. ++|..+++. .-+..++
T Consensus 173 ~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 173 LSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp --EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEE-TTTEEEE
T ss_pred ccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEc-CCceEEE
Confidence 788999995 566666677788888999 556655442100 000111123456678887 788665554 4444433
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.002 Score=74.71 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=104.0
Q ss_pred CCccCCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCC-eEEEEEeCCCCEEEEEeccc-----eEE
Q 001628 451 GSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIP-LTALYYDGTSRVLVSGDQSG-----MVR 524 (1042)
Q Consensus 451 ~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~-V~~l~fsp~~~~Lasg~~dG-----~V~ 524 (1042)
.+.++++.+..++.|+.+|.|-+.+-+-... ..|..+... |+.+....+..+|++-+.|+ .|+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~-----------~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLI-----------RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceee-----------ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 3445888888999999999988887654321 122444444 55555555556777766654 589
Q ss_pred EEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe--cc---CCeEEEe
Q 001628 525 IFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD--TE---GPTVLYQ 599 (1042)
Q Consensus 525 vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD--~~---~~~~~~~ 599 (1042)
||++..........+. ..|.+-...+.....++++++.+.+-+.+|+|..||.|..+. +. +.+..+.
T Consensus 96 iw~lek~~~n~sP~c~--------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCL--------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred EecccccCCCCCccee--------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence 9999865321100111 011100011112347899999999999999999999999883 31 2222222
Q ss_pred cccccccCCCeEEEEEEeeecCCCCceE-EEEEeCCceEEEEECCCCce
Q 001628 600 KHIASDISSGIVSLQFETCSLQGFEKNF-LVIATKDSSVLVLDSDNGNM 647 (1042)
Q Consensus 600 ~~~~~~~~~~V~sl~fs~~~~~~~~~~~-L~s~s~Dg~V~vwd~~tg~~ 647 (1042)
.. ...+||.|.|.. ++.. |++++ -..|.+|.+. |+.
T Consensus 168 ~~----~~~pITgL~~~~------d~~s~lFv~T-t~~V~~y~l~-gr~ 204 (933)
T KOG2114|consen 168 HR----GKEPITGLALRS------DGKSVLFVAT-TEQVMLYSLS-GRT 204 (933)
T ss_pred cc----CCCCceeeEEec------CCceeEEEEe-cceeEEEEec-CCC
Confidence 22 345999999996 6655 55555 4578889877 554
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00096 Score=76.81 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=121.1
Q ss_pred ccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccc
Q 001628 459 KNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 538 (1042)
Q Consensus 459 ~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~ 538 (1042)
...++-|..+|.|++.+..... ... ..|... ..+|.++++|+.||.|.|..+.+........
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~~-----------~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KTN-----------FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred cceeeeccccceEEEEecCCcc-ccc-----------cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 4588999999999999988652 111 223222 6789999999999999999887655533112
Q ss_pred eeeecccccCccceeeeEEEeecCCCeEEEEEecC-----CcEEEEEecCCcEEEEecc--C--CeEEEecccccccCCC
Q 001628 539 FLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-----SQHLAVGSDQGYVYLLDTE--G--PTVLYQKHIASDISSG 609 (1042)
Q Consensus 539 ~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd-----g~~La~gs~dg~V~vwD~~--~--~~~~~~~~~~~~~~~~ 609 (1042)
| ..++.+++++|| .+.+++|+.-| +.++..+ + ..+.+. ...++
T Consensus 111 f----------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-----~~eG~ 162 (846)
T KOG2066|consen 111 F----------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-----EGEGP 162 (846)
T ss_pred c----------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-----cCccc
Confidence 2 267999999998 46789999988 7776542 1 112111 12459
Q ss_pred eEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecCCCCCCCceEEEEecCCCcCccCccccccccCCCCC
Q 001628 610 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGS 689 (1042)
Q Consensus 610 V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 689 (1042)
|.++.|. |++++=++++| |+|||..+++.+...+.....+ .+. --
T Consensus 163 I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~-----------R~e---------------~f 207 (846)
T KOG2066|consen 163 IHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV-----------RPE---------------LF 207 (846)
T ss_pred eEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCC-----------Ccc---------------cC
Confidence 9999997 88999999777 7999999888775542211000 000 01
Q ss_pred CCCCCCCCCcEEEEEecCceEEEecC
Q 001628 690 PKENAVPKQWFVLLCSEKAACAYSLS 715 (1042)
Q Consensus 690 ~v~~~~~~~~~ll~~~~~~i~i~~~~ 715 (1042)
+-...|.++..|++.-.+.|+|+++.
T Consensus 208 pphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 208 PPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCceEecCCCeEEEecCCeEEEEEEe
Confidence 11245667777888899999999987
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.84 E-value=5.3e-05 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=34.1
Q ss_pred eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLK 149 (1042)
Q Consensus 114 ~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd 149 (1042)
+..+.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567889999999999999999999999999999997
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.83 E-value=0.022 Score=60.58 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=120.2
Q ss_pred ecccCceEEEEEc-CCCCEEEEEEcCCeEEEEecC-CCeEEEEecC----CCcceEEEEEecCCCEEEEEeCC-------
Q 001628 35 YGFPSGCNKFAYD-PLQKILAAATKDGRIKLYGRH-NNTQALLESS----EAVSTKFLQFLENQGILLNVTST------- 101 (1042)
Q Consensus 35 ~G~~~~v~~la~s-p~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~----~~~~v~~l~fs~~~~~Lvs~s~d------- 101 (1042)
+..+. ...++++ ++ ..|.++...+ +.++|.. |..+.+.... .......+++.++|++.++-...
T Consensus 37 ~~~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 37 IDLPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EESSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred EecCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc
Confidence 33344 6677788 56 5556666655 5666865 3455454432 44678889999999877776544
Q ss_pred -CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEccCCccceeeeeeecccccccCccccCCCC
Q 001628 102 -NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLG-DTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 102 -g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg-~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
|.|..++.. ++.......-.....++|+|+++.|++. +..+.|..|+++.....+... ..+ ... ....+.
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~-~~~-~~~-----~~~~g~ 185 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR-RVF-IDF-----PGGPGY 185 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE-EEE-EE------SSSSCE
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeee-eeE-EEc-----CCCCcC
Confidence 457777777 5544444444567899999999988755 567789999987543211111 111 000 001134
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEE
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVG 248 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg 248 (1042)
.-.+++.. +|+..++....+.|.++|.+ |+.+..+ ......+++++|..++...|.+.
T Consensus 186 pDG~~vD~--~G~l~va~~~~~~I~~~~p~-G~~~~~i--------~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 186 PDGLAVDS--DGNLWVADWGGGRIVVFDPD-GKLLREI--------ELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEBT--TS-EEEEEETTTEEEEEETT-SCEEEEE--------E-SSSSEEEEEEESTTSSEEEEE
T ss_pred CCcceEcC--CCCEEEEEcCCCEEEEECCC-ccEEEEE--------cCCCCCEEEEEEECCCCCEEEEE
Confidence 67799998 89888888889999999988 6655543 22345889999975665655544
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0017 Score=68.87 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCcceEEEEEecCCC-EEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEccCCc
Q 001628 79 EAVSTKFLQFLENQG-ILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHS-NYMLLGDTAGKISVLKLDQES 154 (1042)
Q Consensus 79 ~~~~v~~l~fs~~~~-~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~-~~l~sg~~dG~I~vwd~~~~~ 154 (1042)
+...|+.|+|+|... .|..++.++.|.|.|+++............+++++|+-+. ++++.|..+|.|.|||+...+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 346799999999655 7889999999999999999855554444899999999776 899999999999999998765
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.002 Score=73.30 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=109.4
Q ss_pred EEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeee--ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVH--VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~--~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~ 151 (1042)
.+.+.+...|..-++...+.+|+.|+.-|.+++++-.++...... +-.+.++.+.++++..++|.|+..|.|.++-+.
T Consensus 27 ~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 27 LQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred hccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 344555567777778888999999999999999999888744333 245566677889999999999999999999987
Q ss_pred CCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCc
Q 001628 152 QESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQ 231 (1042)
Q Consensus 152 ~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~ 231 (1042)
... .....|.-|.... |+..|++++|++ ++..+++|...|.|.+-.+++. ..+. ...+........
T Consensus 107 ~~~--p~~~~~~t~~d~~------~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~-~~~~---~~~q~il~~ds~ 172 (726)
T KOG3621|consen 107 KEL--PRDLDYVTPCDKS------HKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSR-QAFL---SKSQEILSEDSE 172 (726)
T ss_pred ccC--CCcceeecccccc------CCceEEEEEecc--cccEEeecCCCceEEEEEechh-hhhc---cccceeeccCcc
Confidence 743 2223344433333 567999999999 9999999999999988888772 1111 112223344567
Q ss_pred eeEEEEE
Q 001628 232 VTSACWA 238 (1042)
Q Consensus 232 I~~l~~~ 238 (1042)
|..+.+.
T Consensus 173 IVQlD~~ 179 (726)
T KOG3621|consen 173 IVQLDYL 179 (726)
T ss_pred eEEeecc
Confidence 7777664
No 323
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=3e-05 Score=67.38 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHH
Q 001628 997 ESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIA 1035 (1042)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1042)
=+|..||||||..|.+||+.|+++|..|...|..|.++|
T Consensus 49 V~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 49 VEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999997
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.076 Score=53.52 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccC
Q 001628 92 QGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHG 171 (1042)
Q Consensus 92 ~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~ 171 (1042)
..+++.|+..+.+.--|..++.+..-.....+|.|-+.- -+++++.|+.+|.+++.++.++.... . +.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w--~-f~~------- 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW--N-FVI------- 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee--e-eee-------
Confidence 346778888888999999999877666677777776554 57889999999999999999985211 1 111
Q ss_pred ccccCCCCEE-EEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEE
Q 001628 172 NEVSGDPAVI-NILPQPTAESKRILIIFRDGLISLWDIRESKSIFS 216 (1042)
Q Consensus 172 ~~~~~~~~V~-~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~ 216 (1042)
.+.|- .....+ ++..+.+++.|+.....|..+..+++.
T Consensus 92 -----~~~vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 92 -----LETVKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred -----hhhhccceEEcC--CCceEEEecCCCcEEEecccccceEEe
Confidence 01111 123455 789999999999999999999887775
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.69 E-value=0.00083 Score=78.09 Aligned_cols=182 Identities=11% Similarity=0.134 Sum_probs=123.7
Q ss_pred CEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEE
Q 001628 51 KILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTI 129 (1042)
Q Consensus 51 ~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~ 129 (1042)
..+..|+-...+..+|..+..+.....-....|+ -.-.++++|.+|...|+|.+-|..+-+ +.++..|.+.|.. |
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--f 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT--IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--F 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceE--EEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee--e
Confidence 3455555555566666663222222222222343 234567789999999999999999988 8889999999988 5
Q ss_pred eCCCCEEEEEeC---------CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC
Q 001628 130 MQHSNYMLLGDT---------AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD 200 (1042)
Q Consensus 130 sp~~~~l~sg~~---------dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d 200 (1042)
+-.|+.|++++- |.-|+|||+..... + .|..+|. .-.-+.|+|. -..++++++..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l--~PI~~~~------------~P~flrf~Ps-l~t~~~V~S~s 287 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-L--SPIQFPY------------GPQFLRFHPS-LTTRLAVTSQS 287 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhc-c--CCccccc------------Cchhhhhccc-ccceEEEEecc
Confidence 557888888874 56789999887541 1 1211111 1134788985 67889999999
Q ss_pred CeEEEEe---ccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 201 GLISLWD---IRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 201 g~I~vWd---~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
|...+-| +.+...- ..........+.+++++ ++|+.++.|..+|.|.+|.-.
T Consensus 288 Gq~q~vd~~~lsNP~~~-------~~~v~p~~s~i~~fDiS-sn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAG-------VKMVNPNGSGISAFDIS-SNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cceeeccccccCCCccc-------eeEEccCCCcceeEEec-CCCceEEEecccCcEeeecCC
Confidence 9998888 3332100 11113345569999998 999999999999999999843
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00054 Score=73.34 Aligned_cols=217 Identities=11% Similarity=0.098 Sum_probs=143.9
Q ss_pred cccCceEEEEEcCCCCEEEEEEc-CCeEEEEecCCCeEEE--EecCCCcceEEEEEecCCC----EE-EEEeCCCCEEEE
Q 001628 36 GFPSGCNKFAYDPLQKILAAATK-DGRIKLYGRHNNTQAL--LESSEAVSTKFLQFLENQG----IL-LNVTSTNLIEVW 107 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~gs~-dg~I~iw~~~g~~~~~--~~~~~~~~v~~l~fs~~~~----~L-vs~s~dg~I~vW 107 (1042)
.|.+-+..++.+.++.+.+++.. |..+++||.. +.... +.... .-..+.|....+ .| |+.-.++.|.|+
T Consensus 51 aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~DminmiKL~~--lPg~a~wv~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 51 AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMIKLVD--LPGFAEWVTSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred HHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhccccc--CCCceEEecCCCCeeeeEEeecccCCCcEEE
Confidence 45667888999999999999877 9999999987 32211 11111 111133332222 22 233357889999
Q ss_pred EcCCCc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCc----cccCCCCE
Q 001628 108 DIDKKR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGN----EVSGDPAV 180 (1042)
Q Consensus 108 d~~~~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~----~~~~~~~V 180 (1042)
|-.... .....-|..+|.++.+.+.++.+++....|.|..|..+. . +....-.+.+...+.. ....+...
T Consensus 128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~--~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-P--FQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred CCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC-c--ccCccccccccccccchhhcccccccCc
Confidence 966543 344456889999999999999999999999999999885 1 1000011111111111 12235678
Q ss_pred EEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcc------c------------------ccc-cccCCceeEE
Q 001628 181 INILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNV------L------------------QSV-YHETKQVTSA 235 (1042)
Q Consensus 181 ~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~------~------------------~~~-~~~~~~I~~l 235 (1042)
+++.|+| ++..+.+-..|..|++++..+++.+..+.-.. . +.+ ......-+.+
T Consensus 205 ts~Efsp--~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~ 282 (558)
T KOG0882|consen 205 TSFEFSP--DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA 282 (558)
T ss_pred cceEEcc--ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence 8999999 89999999999999999999998766652110 0 000 1123344567
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 236 CWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 236 ~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+|. ..|++|+-|+-=| |++.++.+.
T Consensus 283 ~fd-es~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 283 VFD-ESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred EEc-CCCCEEEeeccee-EEEEEeecC
Confidence 786 8899999888765 888888875
No 327
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.017 Score=65.84 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=108.5
Q ss_pred EEEcCCCCEEEEEEcC----------C-eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCC
Q 001628 44 FAYDPLQKILAAATKD----------G-RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKK 112 (1042)
Q Consensus 44 la~sp~~~~LA~gs~d----------g-~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~ 112 (1042)
+|..|.|..||+...+ . .|+||+..|+....+.... ..+.++.|..+. .|++...||.++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 4556666666666444 2 5999999998888877766 678889999875 7888999999999998754
Q ss_pred c-------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE-EE
Q 001628 113 R-------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN-IL 184 (1042)
Q Consensus 113 ~-------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~-v~ 184 (1042)
. .......+..|.+..+...| +++-+.++.+.+.+--.........+ .+|.....-+ ....+.. ..
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~---~~~~~~~i~~ 185 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFH---WWPSWTVIPL 185 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccc-cCCCcccccc---cccccccceE
Confidence 4 11111112223333333344 33334555555543222211011111 2222111000 0011111 23
Q ss_pred EccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 185 PQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+.. +....+....++.+.+-+-..-.. ....+++..++.+ |+|+++|.-..+|.+.+.+.+-
T Consensus 186 l~~--~~~~~i~~~~g~~i~~i~~~~~~~------------i~~~~~i~~iavS-png~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 186 LSS--DRVVEILLANGETIYIIDENSFKQ------------IDSDGPIIKIAVS-PNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred eec--CcceEEEEecCCEEEEEEcccccc------------ccCCCCeEEEEEC-CCCCEEEEEECCCCEEEEECcc
Confidence 333 444444445555554333222110 1124689999998 9999999999999999887543
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.60 E-value=0.017 Score=60.96 Aligned_cols=188 Identities=9% Similarity=0.083 Sum_probs=107.2
Q ss_pred CCeEEEEecC-CCeEEEEecCC-CcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEE
Q 001628 59 DGRIKLYGRH-NNTQALLESSE-AVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYM 136 (1042)
Q Consensus 59 dg~I~iw~~~-g~~~~~~~~~~-~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l 136 (1042)
+|.|..||.. |+......... ..... ....++++.+++++.++.|..||..++++......++.+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6888899974 45544444321 11121 1144455578888999999999999998655444454433322 3456677
Q ss_pred EEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEE
Q 001628 137 LLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFS 216 (1042)
Q Consensus 137 ~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~ 216 (1042)
++++.++.|+.+|..++....... ..... ............ .++.++++..++.|..+|+++|+.+..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~--~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIY--LTSSP--------PAGVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEE--E-SSC--------TCSTB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccccceeeeEecccCCcceeeeec--ccccc--------ccccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 888888999999988887322100 00000 001112223333 477899999999999999999998776
Q ss_pred eCCccccccc--ccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 217 MGGNVLQSVY--HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 217 ~~g~~~~~~~--~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
.......... .....+.+-... .++ .+..+..+|.+.-+|+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTT
T ss_pred eecCCCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCC
Confidence 5221100000 001112222222 234 6777777775433388875
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0015 Score=69.16 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCCCCCCCCCcCceeeeeecccCceEEEEEcCCCC-EEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCC-CE
Q 001628 17 GSSDGLKSSDVDPRLVFHYGFPSGCNKFAYDPLQK-ILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQ-GI 94 (1042)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~G~~~~v~~la~sp~~~-~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~-~~ 94 (1042)
.....|.+.+|..-+ .-.++..-|..++|+|..+ +|..++.+..|+|.|.. .............+.+.+|.-|. .+
T Consensus 173 vGv~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy~a~~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 173 VGVQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSYIAYNQIWSCCWDLDERHV 250 (463)
T ss_pred cceEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeeheeccCCceeeeeccCCcce
Confidence 345556667777755 5556677899999999988 89999999999999998 44444333333678889998754 47
Q ss_pred EEEEeCCCCEEEEEcCCCc
Q 001628 95 LLNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 95 Lvs~s~dg~I~vWd~~~~~ 113 (1042)
+.+|...|.|.|+|++..+
T Consensus 251 IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eEEeccCceEEEEEccCCC
Confidence 7788889999999998755
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.55 E-value=0.017 Score=60.94 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCCEEEEEEcCCeEEEEec-CCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee-eecC----C
Q 001628 49 LQKILAAATKDGRIKLYGR-HNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV-HVCK----E 122 (1042)
Q Consensus 49 ~~~~LA~gs~dg~I~iw~~-~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~-~~h~----~ 122 (1042)
++..|.+++.++.|..||. .|+....+..+...... .. ..+..++.++.++.|+.+|..++++... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--ee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 5667777789999999997 56666666653322221 22 2344677777889999999999985443 2211 1
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCE-EEEEEccCCCCCeEEEEECCC
Q 001628 123 EITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV-INILPQPTAESKRILIIFRDG 201 (1042)
Q Consensus 123 ~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V-~~v~~~p~~d~~~lls~~~dg 201 (1042)
..........+..++++..+|.|..+|..+++. + -.+.+....... ....-..+ ..+.+. ++ .++++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~--w~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~-~v~~~~~~g 183 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-L--WKYPVGEPRGSS-PISSFSDINGSPVIS---DG-RVYVSSGDG 183 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEE-E--EEEESSTT-SS---EEEETTEEEEEECC---TT-EEEEECCTS
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcE-E--EEeecCCCCCCc-ceeeecccccceEEE---CC-EEEEEcCCC
Confidence 122333444488999999999999999998873 1 111111100000 00000111 222222 34 788888788
Q ss_pred e-EEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 202 L-ISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 202 ~-I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
. +.+ |+.+++.+... . ...+..+ .. .++..+++++.+|.|..||+.++
T Consensus 184 ~~~~~-d~~tg~~~w~~--------~--~~~~~~~-~~-~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSK--------P--ISGIYSL-PS-VDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp SEEEE-ETTTTEEEEEE--------C--SS-ECEC-EE-CCCTEEEEEETTTEEEEEETTTT
T ss_pred eEEEE-ECCCCCEEEEe--------c--CCCccCC-ce-eeCCEEEEEeCCCEEEEEECCCC
Confidence 5 555 99998855421 1 1223221 23 67888888889999999999986
No 331
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.54 E-value=6.3e-05 Score=65.18 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHhhc
Q 001628 991 SVAKMAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAEHD 1038 (1042)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1042)
......=+++.||+|||+.|++||++|+.+|+.|..-|++|.++|.-+
T Consensus 17 ~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 17 NIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556667789999999999999999999999999999999999998644
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=8.8e-05 Score=85.09 Aligned_cols=200 Identities=17% Similarity=0.254 Sum_probs=130.8
Q ss_pred CceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCC--CE
Q 001628 28 DPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTN--LI 104 (1042)
Q Consensus 28 ~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg--~I 104 (1042)
.+...+| .++..-+|+||+-..+.|++|+-.|.|++|+.. |..+.....|. .+|+.+.=+.+|..+++.+.-. ..
T Consensus 1092 r~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~-SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ-SAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc-cccccccccCCcceeeeeccccCchH
Confidence 3333333 346778999999999999999999999999988 44444455554 7888899888988777665443 47
Q ss_pred EEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEE
Q 001628 105 EVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINI 183 (1042)
Q Consensus 105 ~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v 183 (1042)
.+|+...-- ....+ ..-.|+.|+....+-++|+..-.+.+||+.+.......+.-.+.. .-.=.+.
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~----------~y~~n~a 1236 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS----------SYSNNLA 1236 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh----------hhhcccc
Confidence 889976521 11111 234678898888777888888899999999875211101101101 1122567
Q ss_pred EEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCcc
Q 001628 184 LPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSIL 263 (1042)
Q Consensus 184 ~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~~ 263 (1042)
.|+| +...++ +||. +||++..+.+..|. .....+ .-.|+ |+|..++.-+. |||+++-.
T Consensus 1237 ~FsP--~D~LIl---ndGv--LWDvR~~~aIh~FD--------~ft~~~-~G~FH-P~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1237 HFSP--CDTLIL---NDGV--LWDVRIPEAIHRFD--------QFTDYG-GGGFH-PSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ccCC--CcceEe---eCce--eeeeccHHHHhhhh--------hheecc-ccccc-CCCceEEeech-----hhhhHHHH
Confidence 8999 444333 5564 79999877665541 111111 22477 99999887653 79998753
Q ss_pred c
Q 001628 264 N 264 (1042)
Q Consensus 264 ~ 264 (1042)
.
T Consensus 1295 l 1295 (1516)
T KOG1832|consen 1295 L 1295 (1516)
T ss_pred H
Confidence 3
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.016 Score=64.43 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=118.2
Q ss_pred eEEEEEcCC----CCEEEEEEc----------CCeEEEEecCC------CeEEEEecCCCcceEEEEEecCCCEEEEEeC
Q 001628 41 CNKFAYDPL----QKILAAATK----------DGRIKLYGRHN------NTQALLESSEAVSTKFLQFLENQGILLNVTS 100 (1042)
Q Consensus 41 v~~la~sp~----~~~LA~gs~----------dg~I~iw~~~g------~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~ 100 (1042)
+..+.+..+ ..+||+|+. .|+|.+|+... ++..........+|.+|+-. ++ +|+++ .
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-V 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-E
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-e
Confidence 334445543 689999975 29999999873 23334445556789888876 33 44444 3
Q ss_pred CCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCC
Q 001628 101 TNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPA 179 (1042)
Q Consensus 101 dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 179 (1042)
++.|.+|++.... +.....+...+..+.....++++++|+....|.++.++.....+...... .....
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-----------~~~~~ 174 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARD-----------YQPRW 174 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-----------SS-BE
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEec-----------CCCcc
Confidence 5899999999888 66666555544444455557799999999999988776533212222111 12347
Q ss_pred EEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCc-ccc--cccccCCceeEE---EEEcc--CC------CEE
Q 001628 180 VINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGN-VLQ--SVYHETKQVTSA---CWACP--IG------SKV 245 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~-~~~--~~~~~~~~I~~l---~~~~~--~g------~~l 245 (1042)
++++.|-+ +++.++++..+|.+.++......... ..+. .+. ........|+++ +.. | .+ ..+
T Consensus 175 v~~~~~l~--d~~~~i~~D~~gnl~~l~~~~~~~~~-~~~~~~L~~~~~f~lg~~v~~~~~~~l~-~~~~~~~~~~~~~i 250 (321)
T PF03178_consen 175 VTAAEFLV--DEDTIIVGDKDGNLFVLRYNPEIPNS-RDGDPKLERISSFHLGDIVNSFRRGSLI-PRSGSSESPNRPQI 250 (321)
T ss_dssp EEEEEEE---SSSEEEEEETTSEEEEEEE-SS-SST-TTTTTBEEEEEEEE-SS-EEEEEE--SS---SSSS-TTEEEEE
T ss_pred EEEEEEec--CCcEEEEEcCCCeEEEEEECCCCccc-ccccccceeEEEEECCCccceEEEEEee-ecCCCCcccccceE
Confidence 88899987 55799999999999999886321000 0000 000 112234556666 332 3 12 248
Q ss_pred EEEecCCeEEEE
Q 001628 246 AVGYSNGEILIW 257 (1042)
Q Consensus 246 ~sg~~dG~I~iW 257 (1042)
+.++.+|.|...
T Consensus 251 ~~~T~~G~Ig~l 262 (321)
T PF03178_consen 251 LYGTVDGSIGVL 262 (321)
T ss_dssp EEEETTS-EEEE
T ss_pred EEEecCCEEEEE
Confidence 888899998844
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.48 E-value=0.038 Score=58.57 Aligned_cols=210 Identities=12% Similarity=0.153 Sum_probs=123.5
Q ss_pred ccCceEEEEEcC-CCCEEEEEEcCCeE-EEEecC-CCeEEEEecC-CCcceEEEEEecCCCEEEEEeC-----CCCEEEE
Q 001628 37 FPSGCNKFAYDP-LQKILAAATKDGRI-KLYGRH-NNTQALLESS-EAVSTKFLQFLENQGILLNVTS-----TNLIEVW 107 (1042)
Q Consensus 37 ~~~~v~~la~sp-~~~~LA~gs~dg~I-~iw~~~-g~~~~~~~~~-~~~~v~~l~fs~~~~~Lvs~s~-----dg~I~vW 107 (1042)
+|...-.++.+| ....+|.+-+-|+- .+||.. |.....+..+ ...-.=+-.|++||++|.+.-. .|.|-||
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 355666788999 66778888888764 468876 3444444422 2223334679999999998754 4679999
Q ss_pred EcCCCc--eeeeeecCCCeEEEEEeCCCCEEEEEeC-------CC-----------cEEEEEccCCccceeeeeeecccc
Q 001628 108 DIDKKR--LSHVHVCKEEITSFTIMQHSNYMLLGDT-------AG-----------KISVLKLDQESSQIVKMKYIIPLS 167 (1042)
Q Consensus 108 d~~~~~--~~~~~~h~~~It~v~~sp~~~~l~sg~~-------dG-----------~I~vwd~~~~~~~~~~~~~~ip~~ 167 (1042)
|...+- +..+..|.-.-..+.+.|+++.|+++-- .| ++.+.|..++.+ .. ...+|
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l--l~-q~~Lp-- 157 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL--LE-QVELP-- 157 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce--ee-eeecC--
Confidence 999332 5555555544556778999988887631 12 223333333321 00 01111
Q ss_pred cccCccccCCCCEEEEEEccCCCCCeEEEEECCC-------eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEcc
Q 001628 168 ASHGNEVSGDPAVINILPQPTAESKRILIIFRDG-------LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACP 240 (1042)
Q Consensus 168 ~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg-------~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~ 240 (1042)
...|..++..+++.+ ++..++..-..| .|.+++.... ...+. -....+..-...+-+++++ +
T Consensus 158 -----~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~-~p~~~~~~l~~Y~gSIa~~-~ 226 (305)
T PF07433_consen 158 -----PDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLP-APEEQWRRLNGYIGSIAAD-R 226 (305)
T ss_pred -----ccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCCc--ceecc-CChHHHHhhCCceEEEEEe-C
Confidence 122456888899987 665444443333 2333333221 11110 0011123446788999998 8
Q ss_pred CCCEEEEE-ecCCeEEEEeCCCc
Q 001628 241 IGSKVAVG-YSNGEILIWGVPSI 262 (1042)
Q Consensus 241 ~g~~l~sg-~~dG~I~iWd~~~~ 262 (1042)
+|..+++. =.-|.+.+||..++
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCC
Confidence 88877554 46778999999886
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.47 E-value=8.7e-05 Score=82.70 Aligned_cols=197 Identities=19% Similarity=0.267 Sum_probs=126.5
Q ss_pred eEEEEE--cCCCCEEEEEEcCCeEEEEecCC--CeEEEEecCCCcceEEEEEec-CCCEEEEEe----CCCCEEEEEcCC
Q 001628 41 CNKFAY--DPLQKILAAATKDGRIKLYGRHN--NTQALLESSEAVSTKFLQFLE-NQGILLNVT----STNLIEVWDIDK 111 (1042)
Q Consensus 41 v~~la~--sp~~~~LA~gs~dg~I~iw~~~g--~~~~~~~~~~~~~v~~l~fs~-~~~~Lvs~s----~dg~I~vWd~~~ 111 (1042)
+.|+++ +.++.+||+|..+|.|-+-.... .--..+..+...++++++|++ |...||+|- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 555554 45567999999999998865541 111334455567899999998 455677764 356799999988
Q ss_pred Cc--ee---eee-ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 112 KR--LS---HVH-VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 112 ~~--~~---~~~-~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
+- +. .+. +......+++|..+.+.+.+|.....+.++|+......... -....|..+..
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s---------------vnTk~vqG~tV 203 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS---------------VNTKYVQGITV 203 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh---------------hhhhhccccee
Confidence 72 11 111 23345568888888899999999999999998854311100 01235666788
Q ss_pred ccCCCCCeEEEEECCCeEEEEe-ccCCeeEEEeCCccccccccc----CCceeEEEEEccC--CCEEEEEecCCeEEEEe
Q 001628 186 QPTAESKRILIIFRDGLISLWD-IRESKSIFSMGGNVLQSVYHE----TKQVTSACWACPI--GSKVAVGYSNGEILIWG 258 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd-~~~~~~~~~~~g~~~~~~~~~----~~~I~~l~~~~~~--g~~l~sg~~dG~I~iWd 258 (1042)
.|. .++++++-+ ||.|.+|| ...-+ +.++..... ...+..++|. |. |...+..-..++|+.++
T Consensus 204 dp~-~~nY~cs~~-dg~iAiwD~~rnie-------npl~~i~~~~N~~~~~l~~~ayc-Ptrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 204 DPF-SPNYFCSNS-DGDIAIWDTYRNIE-------NPLQIILRNENKKPKQLFALAYC-PTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred cCC-CCCceeccc-cCceeeccchhhhc-------cHHHHHhhCCCCcccceeeEEec-cCCcchhhhhccCcceEEEec
Confidence 885 567666555 99999999 33322 112222222 2358999996 64 33334444568899999
Q ss_pred CCCc
Q 001628 259 VPSI 262 (1042)
Q Consensus 259 ~~~~ 262 (1042)
+..-
T Consensus 274 i~~v 277 (783)
T KOG1008|consen 274 ICVV 277 (783)
T ss_pred cccc
Confidence 8753
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.46 E-value=0.16 Score=51.29 Aligned_cols=103 Identities=8% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe
Q 001628 133 SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESK 212 (1042)
Q Consensus 133 ~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~ 212 (1042)
..+++.|+..|.+...|..++.+..... -...+.+-+.- -++.++.|+..|.+++.+.++|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i---------------lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI---------------LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh---------------hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchh
Confidence 3678888889999988888876422111 12233333333 47789999999999999999986
Q ss_pred eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 213 SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 213 ~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
....+ . -...|.+-+-..+++..+.+|+.|++....|..+.
T Consensus 85 ~~w~f--------~-~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 85 QIWNF--------V-ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred heeee--------e-ehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 44432 1 11222222222378999999999999999998863
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.46 E-value=0.034 Score=58.95 Aligned_cols=190 Identities=13% Similarity=0.173 Sum_probs=113.1
Q ss_pred EEEcCCCCEEEEEEcC-----CeEEEEecCCCeEEE--EecCCCcceEEEEEecCCCEEEEEeC-------CC-------
Q 001628 44 FAYDPLQKILAAATKD-----GRIKLYGRHNNTQAL--LESSEAVSTKFLQFLENQGILLNVTS-------TN------- 102 (1042)
Q Consensus 44 la~sp~~~~LA~gs~d-----g~I~iw~~~g~~~~~--~~~~~~~~v~~l~fs~~~~~Lvs~s~-------dg------- 102 (1042)
-+|||+|++|.+--.| |.|-|||.......+ +..+. ..-..|.+.||++.|+.+.. .|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 5699999999987655 999999998444444 33332 23344889999988877642 12
Q ss_pred ----CEEEEEcCCCceee---e--eecCCCeEEEEEeCCCCEEEEEeCCC-------cEEEEEccCCccceeeeeeeccc
Q 001628 103 ----LIEVWDIDKKRLSH---V--HVCKEEITSFTIMQHSNYMLLGDTAG-------KISVLKLDQESSQIVKMKYIIPL 166 (1042)
Q Consensus 103 ----~I~vWd~~~~~~~~---~--~~h~~~It~v~~sp~~~~l~sg~~dG-------~I~vwd~~~~~~~~~~~~~~ip~ 166 (1042)
.+..-|..++++.. + .-|.-.|..+++.+++..++..-..| .|.+++-... . .....|.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~----~~~~~p~ 209 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-L----RLLPAPE 209 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-c----eeccCCh
Confidence 24444555665332 2 22556788888888877655543322 2333333221 1 0111111
Q ss_pred ccccCccccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEE
Q 001628 167 SASHGNEVSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKV 245 (1042)
Q Consensus 167 ~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l 245 (1042)
... ..-.+.+-+|++++ ++..+++.+ ..|.+.+||..+++.+.. ..-..++.++.. +++ |
T Consensus 210 ~~~----~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d~~tg~~~~~----------~~l~D~cGva~~-~~~--f 270 (305)
T PF07433_consen 210 EQW----RRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWDAATGRLLGS----------VPLPDACGVAPT-DDG--F 270 (305)
T ss_pred HHH----HhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEECCCCCEeec----------cccCceeeeeec-CCc--e
Confidence 110 11146788999998 888776666 567889999999886653 234566667665 444 4
Q ss_pred EEEecCCeEEEEe
Q 001628 246 AVGYSNGEILIWG 258 (1042)
Q Consensus 246 ~sg~~dG~I~iWd 258 (1042)
+..+..|.+...+
T Consensus 271 ~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 271 LVSSGQGQLIRLS 283 (305)
T ss_pred EEeCCCccEEEcc
Confidence 4444455544333
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.45 E-value=0.036 Score=62.39 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=117.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecC-----C------C-------------------------------eEE-EEe
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRH-----N------N-------------------------------TQA-LLE 76 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~-----g------~-------------------------------~~~-~~~ 76 (1042)
.|+++.|.++..-||+|...|.|.||... + . ... .+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999997432 1 0 000 011
Q ss_pred cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeee---e------cCCCeEEEEEe-----CC---CCEEEEE
Q 001628 77 SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVH---V------CKEEITSFTIM-----QH---SNYMLLG 139 (1042)
Q Consensus 77 ~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~---~------h~~~It~v~~s-----p~---~~~l~sg 139 (1042)
.-...+|++++.+.-| +++.|..+|.+.|.|++...+.... . ....|+++.|. .| .-.|++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2225789999998555 9999999999999999887733221 1 22468898887 12 2689999
Q ss_pred eCCCcEEEEEccC-CccceeeeeeecccccccCccccCCCCEEEEE-Ecc------------------CCCCCeEEEEEC
Q 001628 140 DTAGKISVLKLDQ-ESSQIVKMKYIIPLSASHGNEVSGDPAVINIL-PQP------------------TAESKRILIIFR 199 (1042)
Q Consensus 140 ~~dG~I~vwd~~~-~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~-~~p------------------~~d~~~lls~~~ 199 (1042)
+..|.+.+|.+.- ............ ...+.++|..+. ++. ...-+.+++...
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~--------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGA--------TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEE--------E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeec--------cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 9999999999752 111011000000 012234555444 211 001123666677
Q ss_pred CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEE----ccCCCEEEEEecCCeEEEEeCCCc
Q 001628 200 DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWA----CPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 200 dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~----~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+..++++...+.+..... .........+++. ...+..|++-..+|.|+++.+..-
T Consensus 234 e~~irv~~~~~~k~~~K~--------~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKS--------FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred ccceEEEeCCCCccccee--------eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 888999988876644331 1111122234442 135778999999999999999974
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.42 E-value=0.16 Score=54.63 Aligned_cols=165 Identities=18% Similarity=0.130 Sum_probs=91.1
Q ss_pred EEEEEeCCCcEEEEeCC-CCceeeeeeccccccccCCCCCCC-eEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccc
Q 001628 461 LFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIP-LTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENS 538 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~-~~~~~~l~~l~~~~~~~~~~~~~~-V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~ 538 (1042)
-+.+-+.||++.-..+. .+...... . .-+.....+ +..-++...+..++--+.+|.|+--++..........
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~---t---~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKS---T---KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEE---E---EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred ceEEEecCCceEEEEECCCCCEeEee---c---cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc
Confidence 46677778887776665 23222110 0 001111122 2233556666666667889999888888765422112
Q ss_pred eeeeccc--ccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCC----------cEEEEeccCCeEEEeccccccc
Q 001628 539 FLSFTGS--KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG----------YVYLLDTEGPTVLYQKHIASDI 606 (1042)
Q Consensus 539 ~~~~~~~--~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg----------~V~vwD~~~~~~~~~~~~~~~~ 606 (1042)
+.-+++. +.+-.+ +.-.-+++++..++|.+--..| .|.++|+.+.+.+.+..+..
T Consensus 223 ~~~~t~~e~~~~WrP-----------GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-- 289 (342)
T PF06433_consen 223 WSLLTDAEKADGWRP-----------GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-- 289 (342)
T ss_dssp EESS-HHHHHTTEEE------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--
T ss_pred ccccCccccccCcCC-----------cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--
Confidence 2111211 111111 3445567776665555432222 48888999999987666543
Q ss_pred CCCeEEEEEEeeecCCCC-ceEEEEEe-CCceEEEEECCCCceeeeee
Q 001628 607 SSGIVSLQFETCSLQGFE-KNFLVIAT-KDSSVLVLDSDNGNMLSTNL 652 (1042)
Q Consensus 607 ~~~V~sl~fs~~~~~~~~-~~~L~s~s-~Dg~V~vwd~~tg~~i~~~~ 652 (1042)
++.+|+.+. + ..+|++.+ .++.+.|||..||+.+....
T Consensus 290 --~~~Si~Vsq------d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 290 --PIDSIAVSQ------DDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp --EESEEEEES------SSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred --ccceEEEcc------CCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 677999996 4 44676554 57999999999999997763
No 340
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=97.31 E-value=0.0046 Score=53.92 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred cCCCCCCCccceEEEEEEeCCCCeEEEEecccccCCC-ccEEEEeecccccceeEEEeeCCCCCeeeEEEccCCCCCC-C
Q 001628 281 NLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSM-NLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPN-K 358 (1042)
Q Consensus 281 ~~~~~~~~~pi~~l~~~~~~~~~~~l~~~gg~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 358 (1042)
++|..+ +++|.++.|.........+++.||.++.++ ...++.++... ....++++.+++||..+..+++.. .
T Consensus 7 P~Gp~p-Ck~I~Ki~w~~~~~~~~~iiFsGGmp~~~ygdr~~vTV~~g~-----~~~~ldf~s~VIDF~~i~~~~~~~e~ 80 (105)
T PF08366_consen 7 PYGPFP-CKAINKILWRTSRNGEPFIIFSGGMPRASYGDRHCVTVMQGK-----THVVLDFTSRVIDFFTICESPWPNEF 80 (105)
T ss_pred cCCCCC-CceeeEEEEEecCCCCcEEEEeCCccccccCCCceEEEEeCC-----EEEEEEcCCceEEEEEEcCCCCcccc
Confidence 344443 489999999998888889999999999876 35555554422 346789999999999999886654 3
Q ss_pred CCccEEEEEecCCceEEeec
Q 001628 359 PKQDSFLLLGKSGHFYAFDD 378 (1042)
Q Consensus 359 ~~~~~l~vl~~~G~l~~~d~ 378 (1042)
.++.+|+|+++. .|.++|+
T Consensus 81 ~~P~alvVL~e~-eLVvIDL 99 (105)
T PF08366_consen 81 QDPYALVVLLEE-ELVVIDL 99 (105)
T ss_pred CCCcEEEEEEcC-cEEEEEC
Confidence 577888888887 7888883
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.21 Score=57.05 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=28.2
Q ss_pred CCCeEEEEEeCCCCEEEEEeccceEEEEEeccC
Q 001628 499 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 531 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~ 531 (1042)
..++..|++||+++++|.-..+|.+.|...+-.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 368999999999999999999999888765443
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00096 Score=74.87 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=72.4
Q ss_pred CCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeE-EEEEecCCcEE
Q 001628 499 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSII-SLNMNRNSQHL 577 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~-~l~~spdg~~L 577 (1042)
...|.-+.|+|.-.++|+++.+|.|.+++++-.+... + .-| +.+++ +++|.|||++|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwt---i---------p~p----------~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWT---I---------PIP----------GENVTASLCWRPDGKLL 77 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEe---c---------cCC----------CCccceeeeecCCCCEE
Confidence 3577889999999999999999999999987433322 1 212 25566 99999999999
Q ss_pred EEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEe
Q 001628 578 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 617 (1042)
Q Consensus 578 a~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~ 617 (1042)
|+|..||+|++.|+.++..+...... ....|.++-|++
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~~~s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSFLFS--VETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceeccccc--cccchheeeccc
Confidence 99999999999999988876332111 233777888864
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.11 E-value=0.26 Score=53.28 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=89.2
Q ss_pred CCccEEEEEeCCCcEEEEeCC-CCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCccc
Q 001628 457 KVKNLFITGHSDGAINFWDVS-CPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAI 535 (1042)
Q Consensus 457 ~~~~~l~tg~~Dg~IriWd~~-~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~ 535 (1042)
..++.++.|.++| |.+++.. ......+. +..+|+.+...++-+.|++-+ ||.+.+|++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 3456788898888 8888883 22222222 223499999999877776554 5999999997544322
Q ss_pred ccceeeecccccCccceeeeEEEeecCCCeEEEE---EecCCcEEEEEecCCcEEEEeccCCeE----EEecccccccCC
Q 001628 536 ENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLN---MNRNSQHLAVGSDQGYVYLLDTEGPTV----LYQKHIASDISS 608 (1042)
Q Consensus 536 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~---~spdg~~La~gs~dg~V~vwD~~~~~~----~~~~~~~~~~~~ 608 (1042)
..... ... .... ..........+...+ -.....+|+++.. ..|.||....... .++.-. ...
T Consensus 71 ~~~~~--~~~---~~~~--~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~---lp~ 139 (275)
T PF00780_consen 71 TSAPL--AFP---KSRS--LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS---LPD 139 (275)
T ss_pred ccccc--ccc---cccc--ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE---cCC
Confidence 00000 000 0000 000000112233333 1122345555554 4888888866321 222211 245
Q ss_pred CeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 609 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 609 ~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
.+.+++|. ++.|+.|..++ ..+.|..++......
T Consensus 140 ~~~~i~~~--------~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 140 PPSSIAFL--------GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred CcEEEEEe--------CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 89999998 46677776554 788998887766554
No 344
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0017 Score=47.90 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=37.2
Q ss_pred ceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC
Q 001628 29 PRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN 69 (1042)
Q Consensus 29 ~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g 69 (1042)
++.+.....+..|.+++|+|...+||+|+.+|.|.+|..++
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 56677888899999999999999999999999999998874
No 345
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.14 Score=53.22 Aligned_cols=182 Identities=8% Similarity=0.095 Sum_probs=120.5
Q ss_pred CCcCceeeee--ecccCceEEEEEcCCCCEEEEEEcCCeEEEE-ecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC
Q 001628 25 SDVDPRLVFH--YGFPSGCNKFAYDPLQKILAAATKDGRIKLY-GRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST 101 (1042)
Q Consensus 25 ~~~~~~~~~~--~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw-~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d 101 (1042)
..+..+...+ .|....+++++|+|+.+.|.+-+..+.-.|| +.+|++..++....-.---.+.+..++++.++=-.+
T Consensus 70 ~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 70 LEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred CCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhc
Confidence 3566666666 7899999999999999988888877665555 566788887765443344458899998777777778
Q ss_pred CCEEEEEcCCCc-ee-------eee--ec-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeeccccccc
Q 001628 102 NLIEVWDIDKKR-LS-------HVH--VC-KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASH 170 (1042)
Q Consensus 102 g~I~vWd~~~~~-~~-------~~~--~h-~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~ 170 (1042)
+.+.+..++... .. .+. .+ ....-.++|+|....|+++-+..-+.||.+......+.......|....
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~- 228 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR- 228 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc-
Confidence 888888776553 11 111 12 3456789999999999999998888888776443111100000000000
Q ss_pred CccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCC
Q 001628 171 GNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRES 211 (1042)
Q Consensus 171 ~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~ 211 (1042)
.---..|.++.|++. .++.++-+.+++.+.-.|....
T Consensus 229 ---~~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 229 ---DLFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ---ceEeeccccceecCC-CCcEEEEecCCceEEEEecCCC
Confidence 000136778899984 5666667777888877777654
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.021 Score=50.38 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred eEEEEEcC---CC-CEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceee
Q 001628 41 CNKFAYDP---LQ-KILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSH 116 (1042)
Q Consensus 41 v~~la~sp---~~-~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~ 116 (1042)
|+++++.. +| .-|.+|+.|..|++|+.+ .+...+.-. ..|+.|.-...+ +++.+..+|+|-||+-..+. -.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~--~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~~Rl-WR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITET--DKVTSLCSLGGG-RFAYALANGTVGVYDRSQRL-WR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecc--cceEEEEEcCCC-EEEEEecCCEEEEEeCccee-ee
Confidence 56666544 32 579999999999999988 665554433 467767777774 78999999999999754333 22
Q ss_pred eeecCCCeEEEEEeC---CC-CEEEEEeCCCcEE
Q 001628 117 VHVCKEEITSFTIMQ---HS-NYMLLGDTAGKIS 146 (1042)
Q Consensus 117 ~~~h~~~It~v~~sp---~~-~~l~sg~~dG~I~ 146 (1042)
.+ -...++++++.. +| .-|++|-.+|.|-
T Consensus 77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 223466665532 23 5789999999774
No 347
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0099 Score=70.97 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=76.0
Q ss_pred CeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEE
Q 001628 501 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 580 (1042)
Q Consensus 501 ~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~g 580 (1042)
++..++-.-.+..++.|+..|.|...++..+-.. ++ . ..+. .++|++++|+.||.+++.|
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~----~~------~-ne~v---------~~~Vtsvafn~dg~~l~~G 148 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP----LH------Q-NERV---------QGPVTSVAFNQDGSLLLAG 148 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccch----hh------c-CCcc---------CCcceeeEecCCCceeccc
Confidence 3444444555678999999999999998775321 11 0 1121 3899999999999999999
Q ss_pred ecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 581 SDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 581 s~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
..+|.|.+||+..+.++ +..+.. +++++-+.-... ++..++++..-|. +|..
T Consensus 149 ~~~G~V~v~D~~~~k~l~~i~e~~a-----p~t~vi~v~~t~---~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 149 LGDGHVTVWDMHRAKILKVITEHGA-----PVTGVIFVGRTS---QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCCcEEEEEccCCcceeeeeecCC-----ccceEEEEEEeC---CCcEEEEccCCCc--eEEE
Confidence 99999999999987765 333322 444443332111 4567888887776 6763
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.97 E-value=0.027 Score=65.28 Aligned_cols=156 Identities=9% Similarity=0.050 Sum_probs=96.7
Q ss_pred EcCCCCEEEEE-EcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEe-------------------------
Q 001628 46 YDPLQKILAAA-TKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVT------------------------- 99 (1042)
Q Consensus 46 ~sp~~~~LA~g-s~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s------------------------- 99 (1042)
++|+|+.|... -..+.+.+.|.+ ..+...+..-......+.++++++++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~e-tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAE-TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECc-cceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45666655332 223666677766 433333311111223466777777766654
Q ss_pred ---------------CCCCEEEEEcCC-----CceeeeeecCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCcccee
Q 001628 100 ---------------STNLIEVWDIDK-----KRLSHVHVCKEEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIV 158 (1042)
Q Consensus 100 ---------------~dg~I~vWd~~~-----~~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~ 158 (1042)
.++.|.|.|..+ ..+.....-......++++||++++++++. +.+|.|+|+......+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 235688888887 345555566778899999999999887765 88999999987541000
Q ss_pred ---eeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccC
Q 001628 159 ---KMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRE 210 (1042)
Q Consensus 159 ---~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~ 210 (1042)
...-.+-.... -...-...+|.+ +|+...+-.-|..|..||+.+
T Consensus 359 ~~~~~~~~vvaeve------vGlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE------LGLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec------cCCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 00000000001 112345678888 788888889999999999986
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.84 E-value=1.2 Score=52.39 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=44.7
Q ss_pred cCCcEEEEeccCCeEEEecccccccC-----CCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeec
Q 001628 582 DQGYVYLLDTEGPTVLYQKHIASDIS-----SGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 653 (1042)
Q Consensus 582 ~dg~V~vwD~~~~~~~~~~~~~~~~~-----~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~ 653 (1042)
.+|.|.-+|+.+++++++........ .+...-.... .+.+|++++.||.|+.+|..||+.+....+
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~------~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT------AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe------cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 46778888888888887665431100 1111000111 568899999999999999999999987754
No 350
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.83 E-value=0.35 Score=54.35 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=61.7
Q ss_pred EeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCC-------------
Q 001628 558 VMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQG------------- 622 (1042)
Q Consensus 558 ~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~------------- 622 (1042)
+......+.+++.+|++++.|+.+.=|.|.|+|+.++.++ +++-.. -.+.|-......
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd-------Aqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD-------AQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc-------ceEEEEEeecccccccccccccCCC
Confidence 3344466899999999999999999999999999988876 433321 112222211111
Q ss_pred --CCceEEEEEeCCceEEEEECCCCceeeeeec
Q 001628 623 --FEKNFLVIATKDSSVLVLDSDNGNMLSTNLI 653 (1042)
Q Consensus 623 --~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~ 653 (1042)
+..-+++-+-.-|.|-||.+.+|.-+..+.+
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1223455667789999999999999877755
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.82 E-value=0.062 Score=47.52 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=67.6
Q ss_pred eEEEEEec---C-CCEEEEEeCCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001628 83 TKFLQFLE---N-QGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIV 158 (1042)
Q Consensus 83 v~~l~fs~---~-~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~ 158 (1042)
|++|++.. + ...|++|++|..|+||+-+ .+..-..-.+.|++++-... ..++.|.++|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl---- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL---- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----
Confidence 55666654 2 2579999999999999844 33333344567888887776 567889999999999764432
Q ss_pred eeeeecccccccCccccCCCCEEEEEEccC-CCC-CeEEEEECCCeEE
Q 001628 159 KMKYIIPLSASHGNEVSGDPAVINILPQPT-AES-KRILIIFRDGLIS 204 (1042)
Q Consensus 159 ~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~-~d~-~~lls~~~dg~I~ 204 (1042)
+++ + .+..++++.+... .+| ..|++|..+|.|-
T Consensus 75 ---WRi----K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ---WRI----K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eee----c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 111 0 1335666665531 012 3699999999874
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0063 Score=68.55 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=76.3
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceee
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSH 116 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~ 116 (1042)
.|..+.-+.|+|.-.++|+++.+|.|.+...+.....++..|.....++++|.|||+.|+.|-.||+|++-|++++....
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45678889999999999999999999998877455556655554444599999999999999999999999999988433
Q ss_pred e--eecCCCeEEEEEeC
Q 001628 117 V--HVCKEEITSFTIMQ 131 (1042)
Q Consensus 117 ~--~~h~~~It~v~~sp 131 (1042)
- ......|+++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 3 55667788888863
No 353
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.66 E-value=1.7 Score=49.17 Aligned_cols=290 Identities=12% Similarity=0.171 Sum_probs=151.4
Q ss_pred CCccEEEEEeCCCcEEEEeCCCCcee---eeeeccccccccCCCCCCCeEEEEEeC-----CCCEEEEEeccceEEEEEe
Q 001628 457 KVKNLFITGHSDGAINFWDVSCPLFL---LILSLKQQSEKDFSLSGIPLTALYYDG-----TSRVLVSGDQSGMVRIFKL 528 (1042)
Q Consensus 457 ~~~~~l~tg~~Dg~IriWd~~~~~~~---~l~~l~~~~~~~~~~~~~~V~~l~fsp-----~~~~Lasg~~dG~V~vw~~ 528 (1042)
.+.+.+++|+..|.+|||+....... .++ |. .-+.+|..|..-. +...||+ -.-..+.||.+
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lll------E~---~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v 104 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLL------ET---QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSV 104 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEE------EE---ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEE
Confidence 35578999999999999998654322 112 11 1235777776543 2345554 55667888888
Q ss_pred ccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC-----cEEEEEecCCcEEEEeccCCeEE-Eeccc
Q 001628 529 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS-----QHLAVGSDQGYVYLLDTEGPTVL-YQKHI 602 (1042)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg-----~~La~gs~dg~V~vwD~~~~~~~-~~~~~ 602 (1042)
....... ..|....+....-+..+.....+++-|-| .++++=+.||.+.+++-+..... +-...
T Consensus 105 ~~~~g~~----------~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 105 SLVDGTV----------EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred EecCCCc----------ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 4332211 00011111112222223444555555432 57999999999999998875543 11111
Q ss_pred ccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC---C-c--eeeeeec----CCCCC---------CCceE
Q 001628 603 ASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN---G-N--MLSTNLI----HPKKP---------SRALF 663 (1042)
Q Consensus 603 ~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t---g-~--~i~~~~~----~~~~~---------~~~~~ 663 (1042)
. -...+.|.+ ..+.+++++.+..+.-|.-.. . . ....... ..+.. -.++.
T Consensus 175 l-----lPgPl~Y~~------~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~ 243 (418)
T PF14727_consen 175 L-----LPGPLCYCP------RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALD 243 (418)
T ss_pred C-----CCcCeEEee------cCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEE
Confidence 1 344567777 778888888888888887210 0 0 0000000 00000 01111
Q ss_pred EEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEecCceEEEecCccccccceeEEEeeecCcCeeeEE-EEE
Q 001628 664 MQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWAS-TFY 742 (1042)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~~~~i~i~~~~~~~qg~~k~~~~~~~~~~~~~~~~-~~~ 742 (1042)
|...+ .......+++.++..+.+++.. | ...+.++++-.+.|... ...
T Consensus 244 i~v~~-------------------------~~~~~~~IvvLger~Lf~l~~~----G--~l~~~krLd~~p~~~~~Y~~~ 292 (418)
T PF14727_consen 244 IQVVR-------------------------FSSSESDIVVLGERSLFCLKDN----G--SLRFQKRLDYNPSCFCPYRVP 292 (418)
T ss_pred EEEEE-------------------------cCCCCceEEEEecceEEEEcCC----C--eEEEEEecCCceeeEEEEEee
Confidence 11111 1113466899999999998874 2 33455555544433322 221
Q ss_pred e-cC---ceEEEEEEecCeEEEEcCCCccccccccccceeccCCCCCCccccceee-ccCCcEEEEcCcceEEEEEeecc
Q 001628 743 S-GS---DVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCS-SWDGELIMVNGNQEAFFISALRQ 817 (1042)
Q Consensus 743 ~-~~---~~~lv~~~~~g~I~i~slp~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~~G~~~~~~~~~~~~~~s~l~~ 817 (1042)
. .. ...+++++.++.+.||.=- +++...+++. .| .....-.+ .-+|-++..+. ++...++.|.+
T Consensus 293 ~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~---~P-----Val~v~~~~~~~G~IV~Ls~-~G~L~v~YLGT 361 (418)
T PF14727_consen 293 WYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPH---VP-----VALSVANFNGLKGLIVSLSD-EGQLSVSYLGT 361 (418)
T ss_pred cccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCC---CC-----EEEEecccCCCCceEEEEcC-CCcEEEEEeCC
Confidence 1 11 2248889999999998543 4444444431 11 11111111 22554444444 55555677776
Q ss_pred cc
Q 001628 818 RD 819 (1042)
Q Consensus 818 ~~ 819 (1042)
+-
T Consensus 362 dP 363 (418)
T PF14727_consen 362 DP 363 (418)
T ss_pred CC
Confidence 64
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.65 E-value=1.7 Score=48.95 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=89.8
Q ss_pred cCCCCEEEEEEc---------CCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee
Q 001628 47 DPLQKILAAATK---------DGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV 117 (1042)
Q Consensus 47 sp~~~~LA~gs~---------dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~ 117 (1042)
|||+++++..+. .+.+.|||...+....+... ...+....|+|+++.++-+. ++.|.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 688888888543 27788899883222222222 45677799999999888875 58899999877763322
Q ss_pred --ee-------cC---------CCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCCccceeeeeeecccccccCccccCCC
Q 001628 118 --HV-------CK---------EEITSFTIMQHSNYMLLGDT-AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDP 178 (1042)
Q Consensus 118 --~~-------h~---------~~It~v~~sp~~~~l~sg~~-dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 178 (1042)
.+ .+ +.-.++.||||+++|+.... +..|..+.+..-. +... .-.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~----------~~~~-------~yp 141 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS----------PPDS-------QYP 141 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES----------SSTE-------SS-
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC----------Cccc-------cCC
Confidence 22 11 22357889999998876543 3344444332211 0000 001
Q ss_pred CEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEE
Q 001628 179 AVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAV 247 (1042)
Q Consensus 179 ~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~s 247 (1042)
.+..+.+ |. -|... ..-.+.|+|+.+++.... ............+..+.|. +++..|+.
T Consensus 142 ~~~~~~Y-Pk-~G~~n----p~v~l~v~~~~~~~~~~~---~~~~~~~~~~~yl~~v~W~-~d~~~l~~ 200 (353)
T PF00930_consen 142 EVESIRY-PK-AGDPN----PRVSLFVVDLASGKTTEL---DPPNSLNPQDYYLTRVGWS-PDGKRLWV 200 (353)
T ss_dssp EEEEEE---B-TTS-------EEEEEEEESSSTCCCEE------HHHHTSSEEEEEEEEE-ETTEEEEE
T ss_pred ccccccc-CC-CCCcC----CceEEEEEECCCCcEEEe---eeccccCCCccCcccceec-CCCcEEEE
Confidence 3333443 22 12211 112355788887664321 0111123346778899998 77764433
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.52 E-value=3 Score=50.42 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=69.5
Q ss_pred CeEEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCC------
Q 001628 501 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNS------ 574 (1042)
Q Consensus 501 ~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg------ 574 (1042)
.++....+.+...+++++.++.+............ . ..+ .....|.|+.++|-|
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e---~---------~~~--------~~e~evaCLDisp~~d~~~~s 548 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLRE---V---------SHK--------EFEYEVACLDISPLGDAPNKS 548 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceee---e---------eeh--------eecceeEEEecccCCCCCCcc
Confidence 34444444455566667777666666665443211 0 111 113779999999742
Q ss_pred cEEEEEecCCcEEEEec-cCCeEEEecccc-cccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE--CCCCce
Q 001628 575 QHLAVGSDQGYVYLLDT-EGPTVLYQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD--SDNGNM 647 (1042)
Q Consensus 575 ~~La~gs~dg~V~vwD~-~~~~~~~~~~~~-~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd--~~tg~~ 647 (1042)
+++|+|.++..+.+.-. .....+....+. ....-.|.-.+|-. |..+|.++..||.+.-+. ..||.+
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~------d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG------DIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec------cceEEEEEcCCceEEEEEEEcccceE
Confidence 37999999888776644 233333222211 00122455555554 689999999999987765 444443
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.49 E-value=0.16 Score=58.04 Aligned_cols=183 Identities=11% Similarity=0.146 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEE-EcCCCceeee
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW-DIDKKRLSHV 117 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW-d~~~~~~~~~ 117 (1042)
..+..+.++|.++.+++ ..||.-.||...+-.. ...+. -....|++++ .+|+....++|.|+ +........+
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~G~----g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAFGS----GLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEEEE-----SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-cccCc----eeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence 34789999999999999 5578888888652222 22222 2337899955 67777778899996 4433332222
Q ss_pred eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEE
Q 001628 118 HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILII 197 (1042)
Q Consensus 118 ~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~ 197 (1042)
. .+..+..+-. |..|...+.+ .|.+||+.++.. .. .+ .-.+|..+.|++ ++.+++..
T Consensus 106 ~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~--i~---~i-----------~v~~vk~V~Ws~--~g~~val~ 162 (443)
T PF04053_consen 106 K-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL--IR---RI-----------DVSAVKYVIWSD--DGELVALV 162 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E--EE---EE-----------SS-E-EEEEE-T--TSSEEEEE
T ss_pred c-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcce--ee---EE-----------ecCCCcEEEEEC--CCCEEEEE
Confidence 1 2222333322 7777776555 899999998762 21 11 012488999999 89999888
Q ss_pred ECCCeEEEEeccCCeeEEE--eCCc-ccccccccCCceeEEEEEccCCCEEEEEecCCeEEE
Q 001628 198 FRDGLISLWDIRESKSIFS--MGGN-VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILI 256 (1042)
Q Consensus 198 ~~dg~I~vWd~~~~~~~~~--~~g~-~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~i 256 (1042)
+.+. +.+++.+....... -|.. .......-...|.+.+|. .+ .|+-.+.. .|+.
T Consensus 163 t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 163 TKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED--CFIYTTSN-HLKY 219 (443)
T ss_dssp -S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT--EEEEE-TT-EEEE
T ss_pred eCCe-EEEEEecchhcccccccCchhceEEEEEecceeEEEEEE-cC--EEEEEcCC-eEEE
Confidence 8664 44665543200000 0000 011112226789999997 33 44444444 6666
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.042 Score=65.94 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCCEEEEEEcCCeEEEEecCCCeEEEEe-cCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEE
Q 001628 49 LQKILAAATKDGRIKLYGRHNNTQALLE-SSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITS 126 (1042)
Q Consensus 49 ~~~~LA~gs~dg~I~iw~~~g~~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~ 126 (1042)
...++|+|++.|.|-.+|..|+.....+ .+...+|++++|+.+|.+++.|-.+|.|.+||...+. +..+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4568999999999999999866544333 3346799999999999999999999999999999977 5555555555554
Q ss_pred EE---EeCCCCEEEEEeCCCcEEEEEc
Q 001628 127 FT---IMQHSNYMLLGDTAGKISVLKL 150 (1042)
Q Consensus 127 v~---~sp~~~~l~sg~~dG~I~vwd~ 150 (1042)
+- +..++..+++++..|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 43 3345567888888887 5554
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.43 E-value=0.22 Score=60.24 Aligned_cols=222 Identities=13% Similarity=0.236 Sum_probs=119.9
Q ss_pred CccEEEEE-eCCCcEEEEeCCCCceeeeeeccccccccCCCCC-CCeEEEEEeCC-------CCEEEEEeccceEEEEEe
Q 001628 458 VKNLFITG-HSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSG-IPLTALYYDGT-------SRVLVSGDQSGMVRIFKL 528 (1042)
Q Consensus 458 ~~~~l~tg-~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~-~~V~~l~fsp~-------~~~Lasg~~dG~V~vw~~ 528 (1042)
+.++++.- .....|.-.|+..+... .+|..+. .+|.. |.|+ ..--.+|-.+..+..||.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV----------~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDp 559 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVV----------EEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDP 559 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEE----------EEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEecc
Confidence 44444433 44567788888877654 3444444 23444 4443 223455777777888887
Q ss_pred ccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCC
Q 001628 529 KYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISS 608 (1042)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~ 608 (1042)
.-... .+. .. ..+. + ......+|++-+ ..++||+|+.+|.|++||..+.. .+.++. +...
T Consensus 560 R~~~~----k~v--~~----~~k~-----Y-~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~--AKT~lp-~lG~ 619 (794)
T PF08553_consen 560 RLSGN----KLV--DS----QSKQ-----Y-SSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKR--AKTALP-GLGD 619 (794)
T ss_pred CCCCC----cee--ec----cccc-----c-ccCCCceEEEec-CCceEEEEeCCCcEEeecccchh--hhhcCC-CCCC
Confidence 64321 110 00 0000 0 123556777755 46789999999999999964421 222222 2456
Q ss_pred CeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC--CCc----eeeeeecCC-CCCCCceEEEEecCCCcCccCccccc
Q 001628 609 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD--NGN----MLSTNLIHP-KKPSRALFMQILNGQDGLARGANLSN 681 (1042)
Q Consensus 609 ~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~--tg~----~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1042)
+|++|..+. ||+||+..+ +..+.+++.. .|+ .-....+.. ..|. +..+.+-. ..+..
T Consensus 620 pI~~iDvt~------DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~-Pr~L~L~p--------e~~~~ 683 (794)
T PF08553_consen 620 PIIGIDVTA------DGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQ-PRRLQLKP--------EHVAY 683 (794)
T ss_pred CeeEEEecC------CCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCC-CeEEecCH--------HHHHH
Confidence 999999998 999998888 6678888742 222 111111111 1111 11111110 00111
Q ss_pred cccCCCCCCCC--------CCCCCCcEEEEEecCceEEEecCccccccceeEEEee
Q 001628 682 VAGMNKGSPKE--------NAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKK 729 (1042)
Q Consensus 682 ~~~~~~g~~v~--------~~~~~~~~ll~~~~~~i~i~~~~~~~qg~~k~~~~~~ 729 (1042)
++ ..++..+. +....+..+++++..-+-+|++..+.+|. +..|..+
T Consensus 684 ~~-~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~-~~~Y~ik 737 (794)
T PF08553_consen 684 MQ-HETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGK-KDPYQIK 737 (794)
T ss_pred HH-hccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCC-CCceEEE
Confidence 10 00111121 11234788999999999999999998884 3344443
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.41 E-value=2.5 Score=49.78 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred CEEEEEeCCCCEEEEEcCCCceeeeeecCCC-------eE--EEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeee
Q 001628 93 GILLNVTSTNLIEVWDIDKKRLSHVHVCKEE-------IT--SFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYI 163 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~-------It--~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ 163 (1042)
+.+..++.++.|.-.|..++++.-....... +. .+++ .++..+++++.+|.|+.+|..+++.... +.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~---~~ 137 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWK---FG 137 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeee---ec
Confidence 3577777889999999988874432221111 11 0111 1237889999999999999998873111 11
Q ss_pred cccccccCccccCCCCEEEEEEccCCCCCeEEEEE---------CCCeEEEEeccCCeeEEEe
Q 001628 164 IPLSASHGNEVSGDPAVINILPQPTAESKRILIIF---------RDGLISLWDIRESKSIFSM 217 (1042)
Q Consensus 164 ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~---------~dg~I~vWd~~~~~~~~~~ 217 (1042)
..... ..-..+.-+|.-.+..+++++ .+|.+.-.|..+|+.+..+
T Consensus 138 ~~~~~---------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 138 NNDQV---------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCCc---------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 10000 000011112211234455554 3678889999998877664
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.31 E-value=0.5 Score=49.45 Aligned_cols=172 Identities=12% Similarity=0.214 Sum_probs=98.2
Q ss_pred ceEEEEEecCCCEEEEEeC-CCCEEEEEcCCCceeeeeec-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001628 82 STKFLQFLENQGILLNVTS-TNLIEVWDIDKKRLSHVHVC-KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVK 159 (1042)
Q Consensus 82 ~v~~l~fs~~~~~Lvs~s~-dg~I~vWd~~~~~~~~~~~h-~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~ 159 (1042)
-+..|.|.|+.+.|+++.+ .+.|...+.++..+..+.-. -+-.-.|++..++.++++--.++.+.+++++.....+..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 4888999998776766654 56676677653334443322 245788899888888777767999999998543311111
Q ss_pred e---eeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccC---CeeEEEeCCcccccccccCCcee
Q 001628 160 M---KYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRE---SKSIFSMGGNVLQSVYHETKQVT 233 (1042)
Q Consensus 160 ~---~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~---~~~~~~~~g~~~~~~~~~~~~I~ 233 (1042)
. .+.+.. ...+...+-.++|.| ..++|+++-+.....++.+.. ...+.................+.
T Consensus 103 ~~~~~~~l~~------~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 103 ADVQKISLGF------PNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp EEEEEEE---------S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred hhceEEeccc------ccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 1 111111 112345789999999 788899998888877887764 22222211111111233455688
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 234 SACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 234 ~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++++++..|.+++....+..|..+|...
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 9999966678888888888999999554
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.26 E-value=0.44 Score=51.50 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=90.9
Q ss_pred cCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceee----------
Q 001628 47 DPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSH---------- 116 (1042)
Q Consensus 47 sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~---------- 116 (1042)
...++.|++|+.+| |.+++....... .......+|..|...++-+.|++.++ +.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~-~~i~~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKP-TRILKLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccc-eeEeecceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence 45678999999999 899988311111 11112234999999998888888765 999999987654222
Q ss_pred -----eeecCCCeEEEE---EeCCCCEEEEEeCCCcEEEEEccCCccce--eeeeeecccccccCccccCCCCEEEEEEc
Q 001628 117 -----VHVCKEEITSFT---IMQHSNYMLLGDTAGKISVLKLDQESSQI--VKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 117 -----~~~h~~~It~v~---~sp~~~~l~sg~~dG~I~vwd~~~~~~~~--~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
.......+..++ -.....+|+++... .|.+|.+....... ....+. -+..+.++.|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~------------lp~~~~~i~~~ 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS------------LPDPPSSIAFL 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE------------cCCCcEEEEEe
Confidence 111223455555 12223455555544 88888887642111 111111 24678888887
Q ss_pred cCCCCCeEEEEECCCeEEEEeccCCeeEE
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIF 215 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~vWd~~~~~~~~ 215 (1042)
++.+++|..++ ..+.|+.++....
T Consensus 148 ----~~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 148 ----GNKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred ----CCEEEEEeCCc-eEEEecCCCCceE
Confidence 45678887666 5588999766443
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.24 E-value=1.7 Score=45.40 Aligned_cols=207 Identities=9% Similarity=0.040 Sum_probs=122.3
Q ss_pred CcCceeeeeecccCce--EEEEEcCCCCEEEEEEcCC--eEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeC
Q 001628 26 DVDPRLVFHYGFPSGC--NKFAYDPLQKILAAATKDG--RIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTS 100 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v--~~la~sp~~~~LA~gs~dg--~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~ 100 (1042)
.+.++.+..|.|.... -.+.|..++.++-+.+.-| .|+.++.. |++......+...-=-.+....|. ...-...
T Consensus 30 ~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-l~qLTWk 108 (264)
T PF05096_consen 30 VYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-LYQLTWK 108 (264)
T ss_dssp EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-EEEEESS
T ss_pred eeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-EEEEEec
Confidence 4577888888877554 5588877888877777666 68888887 455555555543333334455444 5555678
Q ss_pred CCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCE
Q 001628 101 TNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAV 180 (1042)
Q Consensus 101 dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V 180 (1042)
++...+||..+-+.......++.=+.++ .+++.|+..+....++.+|..+... .... .+... + .+-..+
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i--~V~~~---g---~pv~~L 177 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTI--QVTDN---G---RPVSNL 177 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEE--E-EET---T---EE---E
T ss_pred CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccce-EEEE--EEEEC---C---EECCCc
Confidence 8999999999877555555666677777 5777888888788999999877542 1111 11100 0 011345
Q ss_pred EEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccc-------cccCCceeEEEEEccCCC-EEEEE
Q 001628 181 INILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSV-------YHETKQVTSACWACPIGS-KVAVG 248 (1042)
Q Consensus 181 ~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~-------~~~~~~I~~l~~~~~~g~-~l~sg 248 (1042)
+-+.|- +|...+=......|..-|..+|+++..+.-..+... .....-...++|. |... +++||
T Consensus 178 NELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd-~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD-PETDRLFVTG 249 (264)
T ss_dssp EEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE-TTTTEEEEEE
T ss_pred EeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe-CCCCEEEEEe
Confidence 556666 677667777788888999999998776532222111 1124557889998 5555 44544
No 363
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.22 E-value=0.031 Score=65.64 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=101.1
Q ss_pred CCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEecc---------ceEEEE
Q 001628 456 SKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---------GMVRIF 526 (1042)
Q Consensus 456 ~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~d---------G~V~vw 526 (1042)
..+++++.+|+..|+|-+-|..+-... +.+..|.+.|.+ |+-.|..|++++.. .-|+||
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~i----------ht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETI----------HTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCcee----------eeeeccccceee--eeccCCeEEEeecccccccccccchhhhh
Confidence 345678999999999999999875433 333788888875 45567888888764 457888
Q ss_pred EeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecC-CcEEEEEecCCcEEEEe---ccCCeEE-Eecc
Q 001628 527 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRN-SQHLAVGSDQGYVYLLD---TEGPTVL-YQKH 601 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spd-g~~La~gs~dg~V~vwD---~~~~~~~-~~~~ 601 (1042)
|+..........+ +. ++ .-+.|.|. ...+|+.+..|.+.+.| +..+..- +..+
T Consensus 252 DLRmmral~PI~~-----------~~----------~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~ 309 (1118)
T KOG1275|consen 252 DLRMMRALSPIQF-----------PY----------GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN 309 (1118)
T ss_pred hhhhhhccCCccc-----------cc----------Cc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc
Confidence 8865443221111 11 22 44566764 46789999999999999 5544322 3333
Q ss_pred cccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE
Q 001628 602 IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 641 (1042)
Q Consensus 602 ~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd 641 (1042)
.. .+.+..+++|+ +++.|+.|..+|.|.+|.
T Consensus 310 p~---~s~i~~fDiSs------n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 310 PN---GSGISAFDISS------NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cC---CCcceeEEecC------CCceEEEecccCcEeeec
Confidence 22 34699999999 999999999999999997
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.17 E-value=0.27 Score=58.59 Aligned_cols=188 Identities=11% Similarity=0.071 Sum_probs=105.2
Q ss_pred CceEEEEEcCCCCEEEEEEc------CC--eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCC---------
Q 001628 39 SGCNKFAYDPLQKILAAATK------DG--RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTST--------- 101 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~------dg--~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d--------- 101 (1042)
..++..+++|+++.+|.... |. .|.+++..|.......+. ..+.-.|+|+++.|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~---~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH---SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC---CCCCceECCCCCceEEEecCcceEEEecc
Confidence 35788999999999888762 43 455555544443333332 25567799998877777543
Q ss_pred ---CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEE---EccCCccceeeeeeecccccccCcccc
Q 001628 102 ---NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVL---KLDQESSQIVKMKYIIPLSASHGNEVS 175 (1042)
Q Consensus 102 ---g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vw---d~~~~~~~~~~~~~~ip~~~~~~~~~~ 175 (1042)
+.+.+.+++.+.... ...+.|+.+.|||||.+++.-. +|.|++- .-..+...+ .-+..+. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l-~~~~~l~--------~~ 494 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYAL-TNPREVG--------PG 494 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceee-cccEEee--------cc
Confidence 233333444444322 3456899999999999888765 4777773 323332111 0011110 01
Q ss_pred CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccc--cCCceeEEEEEccCCCEEEEEecCCe
Q 001628 176 GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYH--ETKQVTSACWACPIGSKVAVGYSNGE 253 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~--~~~~I~~l~~~~~~g~~l~sg~~dG~ 253 (1042)
-...+.++.|.+ ++. |+++..++.-.+|.+.-. |........ ...++.+++-. + ..++....+|.
T Consensus 495 l~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v~vD-------G~~~~~~~~~n~~~~v~~vaa~-~--~~iyv~~~~g~ 561 (591)
T PRK13616 495 LGDTAVSLDWRT--GDS-LVVGRSDPEHPVWYVNLD-------GSNSDALPSRNLSAPVVAVAAS-P--STVYVTDARAV 561 (591)
T ss_pred cCCccccceEec--CCE-EEEEecCCCCceEEEecC-------CccccccCCCCccCceEEEecC-C--ceEEEEcCCce
Confidence 123467899997 555 667776665556655432 111111111 24566666554 3 34555566663
Q ss_pred E
Q 001628 254 I 254 (1042)
Q Consensus 254 I 254 (1042)
+
T Consensus 562 ~ 562 (591)
T PRK13616 562 L 562 (591)
T ss_pred E
Confidence 3
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.12 E-value=4.4 Score=48.10 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=41.4
Q ss_pred CcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeeecC
Q 001628 584 GYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH 654 (1042)
Q Consensus 584 g~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~ 654 (1042)
|.|.=||+.++++.++...... ...+. ... .+.+++.++.||.++.+|.+||+.+....+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p---~~~~~-l~t------~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFP---LWGGV-LAT------AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCC---CCCcc-eEE------CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4577788888888765543210 11111 111 4667888899999999999999999877554
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.09 E-value=0.0039 Score=70.04 Aligned_cols=212 Identities=17% Similarity=0.241 Sum_probs=123.4
Q ss_pred cccCceEEEEEcCC-CCEEEEEE----cCCeEEEEecCCC-----eEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEE
Q 001628 36 GFPSGCNKFAYDPL-QKILAAAT----KDGRIKLYGRHNN-----TQALLESSEAVSTKFLQFLENQGILLNVTSTNLIE 105 (1042)
Q Consensus 36 G~~~~v~~la~sp~-~~~LA~gs----~dg~I~iw~~~g~-----~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~ 105 (1042)
|+....+++||.+- ..+||+|- .|..+.|||.... -...|..........++|..+.+.+++|.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 45566899999884 56888883 3366899998722 11223332223444688999999999999999999
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEc-cCCccceeeeeeecccccccCccccCCCCEEEE
Q 001628 106 VWDIDKKRLSHVHVCKEEITSFTIMQ-HSNYMLLGDTAGKISVLKL-DQESSQIVKMKYIIPLSASHGNEVSGDPAVINI 183 (1042)
Q Consensus 106 vWd~~~~~~~~~~~h~~~It~v~~sp-~~~~l~sg~~dG~I~vwd~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v 183 (1042)
++|++..........+..+..+.++| ..+|+++-. ||.|.+||- ..-+ .+..+-... .......+..+
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-----npl~~i~~~----~N~~~~~l~~~ 249 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-----NPLQIILRN----ENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-----cHHHHHhhC----CCCcccceeeE
Confidence 99987554332222334566777888 668876655 999999993 2221 111100000 00112368999
Q ss_pred EEccCCCCCeEEEEE-CCCeEEEEeccCCe--------eEEEeCCccccccccc--CCceeEEEEEccC-CCEEEEEecC
Q 001628 184 LPQPTAESKRILIIF-RDGLISLWDIRESK--------SIFSMGGNVLQSVYHE--TKQVTSACWACPI-GSKVAVGYSN 251 (1042)
Q Consensus 184 ~~~p~~d~~~lls~~-~dg~I~vWd~~~~~--------~~~~~~g~~~~~~~~~--~~~I~~l~~~~~~-g~~l~sg~~d 251 (1042)
+|+|+ ....+++.. ..++|+++|+..-. .......+. ..... -..|.+..|+..+ -...+++-.+
T Consensus 250 aycPt-rtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~--~~q~~~~~s~I~~f~wH~~s~~er~il~~~n 326 (783)
T KOG1008|consen 250 AYCPT-RTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKY--PVQPNSQCSGIDFFTWHTASPTERQILGVIN 326 (783)
T ss_pred EeccC-CcchhhhhccCcceEEEecccccCCcccccccceeeecccc--cccccccccceeecCcCcCCccceeEEeecc
Confidence 99997 444555555 45789999986421 000000000 11112 2678888887333 2344444444
Q ss_pred CeEEEEeCC
Q 001628 252 GEILIWGVP 260 (1042)
Q Consensus 252 G~I~iWd~~ 260 (1042)
-.+.-+++.
T Consensus 327 l~~~Df~V~ 335 (783)
T KOG1008|consen 327 LQPKDFSVH 335 (783)
T ss_pred CChhhccch
Confidence 444444444
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.07 E-value=0.87 Score=50.46 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=83.7
Q ss_pred CcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCC-C-eEEEEecCCCcceEEEEEecCCCEEEEEeCCCC
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHN-N-TQALLESSEAVSTKFLQFLENQGILLNVTSTNL 103 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g-~-~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~ 103 (1042)
...++.+..+-+++.|++++-- +..|++|. ++.|.+|+.+. . .......+....+.++....+ +++.|+.-..
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~s 150 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKS 150 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSS
T ss_pred ceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccC
Confidence 5678888888999999999876 44466655 48899988763 3 455545555556766666644 7999998888
Q ss_pred EEEEEcCC--Cceeee--eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001628 104 IEVWDIDK--KRLSHV--HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 104 I~vWd~~~--~~~~~~--~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
|.++..+. .++..+ ...+..++++.|.++++.+++++.+|.+.++....
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88775543 333333 23456789999987778999999999999999874
No 368
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.0054 Score=71.08 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccc--eEEEEEeccCC
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG--MVRIFKLKYEP 532 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG--~V~vw~~~~~~ 532 (1042)
|+.+.+.|+.|+..|.|+++++.++... .....|+++|+.+.-+.+|.++.+.+... ...+|++...-
T Consensus 1109 fs~~~~hL~vG~~~Geik~~nv~sG~~e----------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSSGSME----------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred eecCCceEEeeeccceEEEEEccCcccc----------ccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 6677779999999999999999998653 34489999999999999997776655432 57889987521
Q ss_pred cccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEE---EecccccccCCC
Q 001628 533 HAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL---YQKHIASDISSG 609 (1042)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~---~~~~~~~~~~~~ 609 (1042)
. ..|. -..-.++.|+.....-++|..-..+.|||++++..+ +...... +-.
T Consensus 1179 ~---------------~~Hs---------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~--~y~ 1232 (1516)
T KOG1832|consen 1179 G---------------PRHS---------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS--SYS 1232 (1516)
T ss_pred C---------------cccc---------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh--hhh
Confidence 1 1221 033456788877666777777778899999998775 2222221 112
Q ss_pred eEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC
Q 001628 610 IVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 610 V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
=.+..|+| +..+++- || .+||...
T Consensus 1233 ~n~a~FsP------~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1233 NNLAHFSP------CDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred ccccccCC------CcceEee---Cc--eeeeecc
Confidence 26677888 5555543 44 4688663
No 369
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.02 E-value=0.45 Score=55.50 Aligned_cols=200 Identities=11% Similarity=0.119 Sum_probs=109.7
Q ss_pred CCCCEEEEEEc-CCeEEEEecCC-CeEEEEecCCCcceEEEEEe--cCCCEEEEEeC------------------CCCEE
Q 001628 48 PLQKILAAATK-DGRIKLYGRHN-NTQALLESSEAVSTKFLQFL--ENQGILLNVTS------------------TNLIE 105 (1042)
Q Consensus 48 p~~~~LA~gs~-dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs--~~~~~Lvs~s~------------------dg~I~ 105 (1042)
.||++|.+-.. +++|-..+.+- +...++..+....+..++|. |+..|+++++. .+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 46777777664 45555555541 12233444444444444443 34444443332 24466
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEe---CC-------------------------------------CcE
Q 001628 106 VWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGD---TA-------------------------------------GKI 145 (1042)
Q Consensus 106 vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~---~d-------------------------------------G~I 145 (1042)
+.|.++.++.....-.+.-..++++|++.++++.+ +. +.|
T Consensus 219 vID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 219 AVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 66777665433333344556778889999988875 21 123
Q ss_pred EEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCCeeEEEeC----Cc
Q 001628 146 SVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRESKSIFSMG----GN 220 (1042)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~~~~~~~~----g~ 220 (1042)
.++|..+....-....+. ..-......+.++| |+.++++++ .+++|.|.|+.+.+..+.-. ..
T Consensus 299 ~VID~~t~~~~~~~v~~y----------IPVGKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 299 PVVDGRKAANAGSALTRY----------VPVPKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEEECCccccCCcceEEE----------EECCCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 333322200000000011 11234566789999 999888777 48999999999855322100 00
Q ss_pred ccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 221 VLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 221 ~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
..........++ ..+|. ++|..+.+...|..|..||+..
T Consensus 367 vvaevevGlGPL-HTaFD-g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPELGLGPL-HTAFD-GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeeccCCCcc-eEEEC-CCCCEEEeEeecceeEEEehHH
Confidence 001111122232 34576 8899999999999999999986
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.12 Score=58.96 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCEEEEEEcC----CeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEe-CCCC--EEEEEcCCC
Q 001628 41 CNKFAYDPLQKILAAATKD----GRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVT-STNL--IEVWDIDKK 112 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~d----g~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s-~dg~--I~vWd~~~~ 112 (1042)
+..-+|+|+++.|+.-+-. ..+.+++.+. .....+.... .-..-+|+|||+.|+-.. .|+. |.+.|+.++
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC--ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 4446788999887776332 4588888772 3333333222 122267999998776654 4554 777788888
Q ss_pred ceeeeeecCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 113 RLSHVHVCKEEITSFTIMQHSNYMLLGDT-AG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 113 ~~~~~~~h~~~It~v~~sp~~~~l~sg~~-dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
....+..-.+.-+.=.|+|+|++++-.+. .| .|.+++.+... ..+..... +.-..-.|+|
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~-------------~~~~~p~~Sp-- 335 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSG-------------GGNSNPVWSP-- 335 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccC-------------CCCcCccCCC--
Confidence 75555444444445568999988876554 45 56666666655 22221111 1111567888
Q ss_pred CCCeEEEEEC-CCe--EEEEeccCCe
Q 001628 190 ESKRILIIFR-DGL--ISLWDIRESK 212 (1042)
Q Consensus 190 d~~~lls~~~-dg~--I~vWd~~~~~ 212 (1042)
||.+++..+. +|. |.+.|+.++.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCC
Confidence 8998887774 344 5566665544
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.01 E-value=2.5 Score=45.76 Aligned_cols=201 Identities=9% Similarity=0.075 Sum_probs=115.5
Q ss_pred EEEEEcCCCCEEEEEEcC--CeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcC-CCceeee
Q 001628 42 NKFAYDPLQKILAAATKD--GRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDID-KKRLSHV 117 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~d--g~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~-~~~~~~~ 117 (1042)
..++++.+++++.+..-. ..|.|.|... ++...+..+. +. +.|=...+.+.+.|.||.+.-..++ .++....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CW-LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EE-EEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EE-EEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 346888999988886443 6688888873 3333333433 22 2222122458899999999999887 4443211
Q ss_pred e---ecC--CCeE-EEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecc------cccccCccccCCCCEEEEEE
Q 001628 118 H---VCK--EEIT-SFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIP------LSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 118 ~---~h~--~~It-~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip------~~~~~~~~~~~~~~V~~v~~ 185 (1042)
. -+. .++. .=+++..+..++--+-+|.|+-.|+......... +..+. ..|+. +.-.-+++
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrP-------GG~Q~~A~ 245 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGWRP-------GGWQLIAY 245 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE--------SSS-EEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccCcCC-------cceeeeee
Confidence 1 111 2222 2234555666666788999999999887632221 22211 11221 23333677
Q ss_pred ccCCCCCeEEEEEC--------CC--eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEe-cCCeE
Q 001628 186 QPTAESKRILIIFR--------DG--LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGY-SNGEI 254 (1042)
Q Consensus 186 ~p~~d~~~lls~~~--------dg--~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~-~dG~I 254 (1042)
++ ..++|.+.-. |+ .|.++|+.+++.+.++ .-..++.++..+..+..+|++.+ .++.|
T Consensus 246 ~~--~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri---------~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l 314 (342)
T PF06433_consen 246 HA--ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI---------PLEHPIDSIAVSQDDKPLLYALSAGDGTL 314 (342)
T ss_dssp ET--TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE---------EEEEEESEEEEESSSS-EEEEEETTTTEE
T ss_pred cc--ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE---------eCCCccceEEEccCCCcEEEEEcCCCCeE
Confidence 77 5666665432 22 4777889998888774 12346778989843444665544 57999
Q ss_pred EEEeCCCcccc
Q 001628 255 LIWGVPSILNL 265 (1042)
Q Consensus 255 ~iWd~~~~~~~ 265 (1042)
.+||..++...
T Consensus 315 ~v~D~~tGk~~ 325 (342)
T PF06433_consen 315 DVYDAATGKLV 325 (342)
T ss_dssp EEEETTT--EE
T ss_pred EEEeCcCCcEE
Confidence 99999987433
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.96 E-value=0.018 Score=39.63 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.9
Q ss_pred EEeecCCCeEEEEEecCCcEEEEEecCCcEEEEe
Q 001628 557 KVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLD 590 (1042)
Q Consensus 557 ~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD 590 (1042)
.+..+...|.+++|.+++.++++|+.||.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445668999999999999999999999999996
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=0.016 Score=57.50 Aligned_cols=141 Identities=15% Similarity=0.222 Sum_probs=81.2
Q ss_pred EEEEeCCCCEEEEEcCCCce--eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCc
Q 001628 95 LLNVTSTNLIEVWDIDKKRL--SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGN 172 (1042)
Q Consensus 95 Lvs~s~dg~I~vWd~~~~~~--~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~ 172 (1042)
|..-+.|+.|.-+++...++ ..-..|... +.+..-+.-+++|+.+|.|.+|+...........
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------------ 97 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV------------ 97 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhh------------
Confidence 44456677777777655442 111122221 3333456789999999999999987432101000
Q ss_pred cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccC-CceeEEEEEccCCCEEEEE--e
Q 001628 173 EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHET-KQVTSACWACPIGSKVAVG--Y 249 (1042)
Q Consensus 173 ~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~-~~I~~l~~~~~~g~~l~sg--~ 249 (1042)
.....+|.++...-. ++.+..++..||.|+.|++.-++.+...+ +|. .++..+..+ ..+..++.+ +
T Consensus 98 -~s~~e~i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g--------~h~~~~~e~~ivv-~sd~~i~~a~~S 166 (238)
T KOG2444|consen 98 -CSGEESIDLGIPNGR-DSSLGCVGAQDGRIRACNIKPNKVLGYVG--------QHNFESGEELIVV-GSDEFLKIADTS 166 (238)
T ss_pred -hcccccceecccccc-ccceeEEeccCCceeeeccccCceeeeec--------cccCCCcceeEEe-cCCceEEeeccc
Confidence 011234444444443 67789999999999999999887666542 232 333333333 345555555 5
Q ss_pred cCCeEEEEeCCC
Q 001628 250 SNGEILIWGVPS 261 (1042)
Q Consensus 250 ~dG~I~iWd~~~ 261 (1042)
.|..++.|++..
T Consensus 167 ~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 167 HDRVLKKWNVEK 178 (238)
T ss_pred cchhhhhcchhh
Confidence 566666666653
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.76 E-value=0.027 Score=41.56 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCCeEEEEEecCCcEEEEEecCCcEEEEeccCCe
Q 001628 562 NGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPT 595 (1042)
Q Consensus 562 ~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~ 595 (1042)
...|.+++|||...+||+|+.+|.|.|+.+...+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3679999999999999999999999999995443
No 375
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.70 E-value=1.9 Score=52.62 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccC---------Ce--eEEEe-C-CcccccccccCCceeEEEEEccC--
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRE---------SK--SIFSM-G-GNVLQSVYHETKQVTSACWACPI-- 241 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~---------~~--~~~~~-~-g~~~~~~~~~~~~I~~l~~~~~~-- 241 (1042)
...|..|.++| +|.+|+..+..|.+.+.=.+. ++ ..++. . +..+ -.......|..+.|+ |.
T Consensus 84 ~f~v~~i~~n~--~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~Wh-P~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNP--TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWH-PWSE 159 (717)
T ss_pred ceeEEEEEECC--CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEc-CCCC
Confidence 35789999999 899999999988765432221 11 11111 0 0000 012446789999998 65
Q ss_pred -CCEEEEEecCCeEEEEeCCCc
Q 001628 242 -GSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 242 -g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
+.+|++-..|+.+++||+...
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCC
Confidence 689999999999999999763
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.57 E-value=0.029 Score=38.55 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=31.1
Q ss_pred eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLK 149 (1042)
Q Consensus 115 ~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd 149 (1042)
..+..|...|+++.|.+.+.++++|+.||.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556888999999999999999999999999996
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=3.1 Score=47.27 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=127.3
Q ss_pred CceEEEEEcCCCCEEEEE-EcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC---CCCEEEEEcCCCce
Q 001628 39 SGCNKFAYDPLQKILAAA-TKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS---TNLIEVWDIDKKRL 114 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~g-s~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~---dg~I~vWd~~~~~~ 114 (1042)
.....+++++.+..+.+. ..++.|.+.|.............. ....+.|.++++.+..+.. ++++.+.|..+..+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678899998854444 445889999965222222221111 3344899999987777766 67888888888874
Q ss_pred eee-eecCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCC
Q 001628 115 SHV-HVCKEEITSFTIMQHSNYMLLGD-TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESK 192 (1042)
Q Consensus 115 ~~~-~~h~~~It~v~~sp~~~~l~sg~-~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~ 192 (1042)
... ..-..+ ..++++|++..+++.. .++.|.+.|..... +.. +... . .......-..+.+.| +++
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~--v~~-~~~~-~------~~~~~~~P~~i~v~~--~g~ 219 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS--VVR-GSVG-S------LVGVGTGPAGIAVDP--DGN 219 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc--eec-cccc-c------ccccCCCCceEEECC--CCC
Confidence 433 222234 8899999999888777 68899999977654 211 1000 0 011122334588898 888
Q ss_pred eEEEEECC---CeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC-CeEEEEeCCCc
Q 001628 193 RILIIFRD---GLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN-GEILIWGVPSI 262 (1042)
Q Consensus 193 ~lls~~~d---g~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d-G~I~iWd~~~~ 262 (1042)
++.+.... +.+...|..++....... ..... ....+... |+|..+.+.... +.+.+.|....
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~------~~~~~-~~~~v~~~-p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDL------PVGSG-APRGVAVD-PAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEecc------ccccC-CCCceeEC-CCCCEEEEEecCCCeEEEEeCCCC
Confidence 77766654 588888888876544310 01111 33345565 899988888554 78888887763
No 378
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.47 E-value=6 Score=44.82 Aligned_cols=143 Identities=10% Similarity=0.152 Sum_probs=89.4
Q ss_pred CCEEEEEEcCCeEEEEecCCC----eEEEEecCCCcceEEEEEe---c-CCCEEEEEeCCCCEEEEEcCC-------Cc-
Q 001628 50 QKILAAATKDGRIKLYGRHNN----TQALLESSEAVSTKFLQFL---E-NQGILLNVTSTNLIEVWDIDK-------KR- 113 (1042)
Q Consensus 50 ~~~LA~gs~dg~I~iw~~~g~----~~~~~~~~~~~~v~~l~fs---~-~~~~Lvs~s~dg~I~vWd~~~-------~~- 113 (1042)
...|++|+.+|.++||...++ ....++..-+.||..|..- + .....+++-.-+.+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 358999999999999987621 1345666667788777743 2 233344455668888888732 11
Q ss_pred --eeeeeecC--CCeEEEEEeCC-----CCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEE
Q 001628 114 --LSHVHVCK--EEITSFTIMQH-----SNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 114 --~~~~~~h~--~~It~v~~sp~-----~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~ 184 (1042)
+.....|. .....++.-|- ..++.+=+.||.+.+|+-+... ..+.+|... .++| +.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~l-------lPgP---l~ 181 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFL-------LPGP---LC 181 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCC-------CCcC---eE
Confidence 33444454 22333333332 3788899999999999977643 122333211 1233 56
Q ss_pred EccCCCCCeEEEEECCCeEEEEecc
Q 001628 185 PQPTAESKRILIIFRDGLISLWDIR 209 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~dg~I~vWd~~ 209 (1042)
|.| ..+.+++++.+..+.-|...
T Consensus 182 Y~~--~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 182 YCP--RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred Eee--cCCEEEEecCceeEEEecHH
Confidence 777 56778888888888777654
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=0.97 Score=46.63 Aligned_cols=108 Identities=15% Similarity=0.213 Sum_probs=71.5
Q ss_pred eeeecccCceEEEEEcCCCC-EEEEEEcCCeE-EEEecCCC-eEEEEe-cCCCcceEEEEEecCCCEEEEEeCC-----C
Q 001628 32 VFHYGFPSGCNKFAYDPLQK-ILAAATKDGRI-KLYGRHNN-TQALLE-SSEAVSTKFLQFLENQGILLNVTST-----N 102 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp~~~-~LA~gs~dg~I-~iw~~~g~-~~~~~~-~~~~~~v~~l~fs~~~~~Lvs~s~d-----g 102 (1042)
+...-.|...-.++|+|..+ -+|.+-+-|+- .+||.++. ..+++. .....-.-+=.|+|||.+|...-+| |
T Consensus 61 v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rG 140 (366)
T COG3490 61 VFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRG 140 (366)
T ss_pred eeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCc
Confidence 34445566667789999764 56777777764 46887742 222222 2222233335699999888776543 6
Q ss_pred CEEEEEcCCCc--eeeeeecCCCeEEEEEeCCCCEEEEE
Q 001628 103 LIEVWDIDKKR--LSHVHVCKEEITSFTIMQHSNYMLLG 139 (1042)
Q Consensus 103 ~I~vWd~~~~~--~~~~~~h~~~It~v~~sp~~~~l~sg 139 (1042)
.|-|||.+.+- +..+..|.-.-..+.+.+||+.|+++
T Consensus 141 ViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 141 VIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred eEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 79999998653 55666666566778899999998876
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.32 E-value=4.5 Score=42.88 Aligned_cols=150 Identities=9% Similarity=-0.007 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCEEEEEE---cCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEE-cCCCc--
Q 001628 40 GCNKFAYDPLQKILAAAT---KDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWD-IDKKR-- 113 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs---~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd-~~~~~-- 113 (1042)
.+...|++++++.+|... ....++++...+.....+.. ..+..-.|.+++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999888877 33556666655444443322 3566678999986666666667777774 33333
Q ss_pred eeeeeec--CCCeEEEEEeCCCCEEEEEe---CCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 114 LSHVHVC--KEEITSFTIMQHSNYMLLGD---TAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 114 ~~~~~~h--~~~It~v~~sp~~~~l~sg~---~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
...+... .+.|+.+.+||||.+++.-. .++.|.+--+...... .+..+...... .......++.+.|.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---~~~~l~~~~~~--~~~~~~~v~~v~W~~- 175 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---VPRRLTGPRRV--APPLLSDVTDVAWSD- 175 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---CcceeccceEe--cccccCcceeeeecC-
Confidence 2222222 22899999999998887655 3578888776544321 01111000000 111235899999998
Q ss_pred CCCCeEEEEEC
Q 001628 189 AESKRILIIFR 199 (1042)
Q Consensus 189 ~d~~~lls~~~ 199 (1042)
++..++.+..
T Consensus 176 -~~~L~V~~~~ 185 (253)
T PF10647_consen 176 -DSTLVVLGRS 185 (253)
T ss_pred -CCEEEEEeCC
Confidence 6655544443
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.18 Score=60.99 Aligned_cols=184 Identities=11% Similarity=0.105 Sum_probs=114.2
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEecC--------C---C------eEEEEecCCCcceEEEEEecCCCEEEEEeCCC--
Q 001628 42 NKFAYDPLQKILAAATKDGRIKLYGRH--------N---N------TQALLESSEAVSTKFLQFLENQGILLNVTSTN-- 102 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~dg~I~iw~~~--------g---~------~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg-- 102 (1042)
..++.++...++.++...+.+.|++.. + + ....+..+...++..+...+|....++....+
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 446777777777777777777777654 0 0 11345555666777777788876666665544
Q ss_pred CEEEEEcCCCce------e------eeeecCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEccCCccceeeeeeecccccc
Q 001628 103 LIEVWDIDKKRL------S------HVHVCKEEITSFTIMQHSNY-MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSAS 169 (1042)
Q Consensus 103 ~I~vWd~~~~~~------~------~~~~h~~~It~v~~sp~~~~-l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~ 169 (1042)
.|.++|+.+-.. . .......-..|+.|.|.-.. .++...|+.|+|..+..........+
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-------- 196 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-------- 196 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC--------
Confidence 688999865321 1 11112245567888887643 45667788898887765431111111
Q ss_pred cCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEE
Q 001628 170 HGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAV 247 (1042)
Q Consensus 170 ~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~s 247 (1042)
-...+++++|+| .|..+++|..+|++.-|...-. ...++ ...-......|.+++|. ....++++
T Consensus 197 ------~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~le-ik~~i----p~Pp~~e~yrvl~v~Wl-~t~eflvv 260 (1405)
T KOG3630|consen 197 ------VTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSLE-IKSEI----PEPPVEENYRVLSVTWL-STQEFLVV 260 (1405)
T ss_pred ------cccceeeEEecc--ccceeeEecCCCeEEEeecccc-eeecc----cCCCcCCCcceeEEEEe-cceeEEEE
Confidence 134789999999 7999999999999987765432 11111 11112225789999998 44444433
No 382
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.23 E-value=0.62 Score=53.38 Aligned_cols=183 Identities=11% Similarity=0.112 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEec-CCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeee
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGR-HNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVH 118 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~-~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~ 118 (1042)
....++|.+ ....|+-..+++|.|+.- ++.....+..+. .+..|-. |..|... .++.|.+||++++++....
T Consensus 70 ~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~--~~~~If~---G~LL~~~-~~~~i~~yDw~~~~~i~~i 142 (443)
T PF04053_consen 70 SGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLPF--SVEKIFG---GNLLGVK-SSDFICFYDWETGKLIRRI 142 (443)
T ss_dssp E-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----SS---EEEEE----SSSEEEE-ETTEEEEE-TTT--EEEEE
T ss_pred ceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcCCc--ccceEEc---CcEEEEE-CCCCEEEEEhhHcceeeEE
Confidence 445677888 444677777788888632 211111222221 2332322 5445544 4458999999999855554
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcc----------ceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESS----------QIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~----------~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
.... |..+.|++++.+++..+.+ .+.+++.+.... .+. ..+. -...|.+..|.-
T Consensus 143 ~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~-~~~E------------~~~~IkSg~W~~- 206 (443)
T PF04053_consen 143 DVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE-LIHE------------ISERIKSGCWVE- 206 (443)
T ss_dssp SS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE-EEEE------------E-S--SEEEEET-
T ss_pred ecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE-EEEE------------ecceeEEEEEEc-
Confidence 4443 8999999999999999866 677777654410 000 0000 024666667763
Q ss_pred CCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 189 AESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+ .++-.+.. .+.. +-.|.. .....-..++.-+.+. +..+.+.....|+.+..+.++.
T Consensus 207 -d--~fiYtT~~-~lkY--l~~Ge~---------~~i~~ld~~~yllgy~-~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 207 -D--CFIYTTSN-HLKY--LVNGET---------GIIAHLDKPLYLLGYL-PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -T--EEEEE-TT-EEEE--EETTEE---------EEEEE-SS--EEEEEE-TTTTEEEEE-TT--EEEEE--H
T ss_pred -C--EEEEEcCC-eEEE--EEcCCc---------ceEEEcCCceEEEEEE-ccCCEEEEEECCCCEEEEEECH
Confidence 2 22222222 4433 333321 1112234566666776 6677888888888888887764
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.12 E-value=0.95 Score=54.96 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=93.9
Q ss_pred CCCEEEE-EeCCCCEEEEEcCCCce-eeeeecCCC-eEEEEEeCCC-------CEEEEEeCCCcEEEEEccCCccceeee
Q 001628 91 NQGILLN-VTSTNLIEVWDIDKKRL-SHVHVCKEE-ITSFTIMQHS-------NYMLLGDTAGKISVLKLDQESSQIVKM 160 (1042)
Q Consensus 91 ~~~~Lvs-~s~dg~I~vWd~~~~~~-~~~~~h~~~-It~v~~sp~~-------~~l~sg~~dG~I~vwd~~~~~~~~~~~ 160 (1042)
+...|+. ....+.|+-.|++.|++ .....+... |.. +.|+. .-.++|-.+..++.||.+-...++...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 4444333 23567899999999994 444444432 444 44542 456889999999999987543212211
Q ss_pred eeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEcc
Q 001628 161 KYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACP 240 (1042)
Q Consensus 161 ~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~ 240 (1042)
. .+.-.......|++-. ...+|++|+.+|.||+||--. + +.-..+.+-..+|..+..+ .
T Consensus 570 ~---------~k~Y~~~~~Fs~~aTt---~~G~iavgs~~G~IRLyd~~g-~-------~AKT~lp~lG~pI~~iDvt-~ 628 (794)
T PF08553_consen 570 Q---------SKQYSSKNNFSCFATT---EDGYIAVGSNKGDIRLYDRLG-K-------RAKTALPGLGDPIIGIDVT-A 628 (794)
T ss_pred c---------ccccccCCCceEEEec---CCceEEEEeCCCcEEeecccc-h-------hhhhcCCCCCCCeeEEEec-C
Confidence 1 0111223466777766 466799999999999999432 1 1122335667899999998 9
Q ss_pred CCCEEEEEecCCeEEEEeCC
Q 001628 241 IGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 241 ~g~~l~sg~~dG~I~iWd~~ 260 (1042)
||.++++.+.. .|.+++..
T Consensus 629 DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 629 DGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred CCcEEEEeecc-eEEEEEEe
Confidence 99998877655 67777653
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=1.9 Score=45.00 Aligned_cols=175 Identities=11% Similarity=0.131 Sum_probs=118.3
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecC--CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCK--EEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIV 158 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~--~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~ 158 (1042)
..+.+|.|+|+.+.|++..+...-.||=...|.+....... ..--.+.+..+++++++--.++.+.++.++.......
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 34889999999999999999999889877777754443322 2345677888899988888899999998887643222
Q ss_pred eeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe-eEEEeCCcccc-cccccCCceeEEE
Q 001628 159 KMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESK-SIFSMGGNVLQ-SVYHETKQVTSAC 236 (1042)
Q Consensus 159 ~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~-~~~~~~g~~~~-~~~~~~~~I~~l~ 236 (1042)
...+.+|...... ......+++|.| ...+++.+-+..-+.|+.+..+. .+......... ...-.-..|.++.
T Consensus 166 ~~~~~i~L~~~~k----~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 166 AKVQKIPLGTTNK----KNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccceEEeccccCC----CCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2223443332211 145778899999 78889999999988888777433 11110000000 0011134577788
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCC
Q 001628 237 WACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
|....+..++-+..++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 8766788888888888888888776
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.95 E-value=0.064 Score=53.42 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=69.3
Q ss_pred CCCEEEEEEcCCeEEEEecC--CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecC-CCe
Q 001628 49 LQKILAAATKDGRIKLYGRH--NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCK-EEI 124 (1042)
Q Consensus 49 ~~~~LA~gs~dg~I~iw~~~--g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~-~~I 124 (1042)
...-|++|+.+|.|.+|... |...-.+.........-+.-..++.+..+++.||.|+-|++.-.+ +.....|. ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 34678999999999998876 222222222211111112222344467788899999999998887 44555566 567
Q ss_pred EEEEEeCCCCEEEEE--eCCCcEEEEEccCC
Q 001628 125 TSFTIMQHSNYMLLG--DTAGKISVLKLDQE 153 (1042)
Q Consensus 125 t~v~~sp~~~~l~sg--~~dG~I~vwd~~~~ 153 (1042)
..+.++..+.++++. +.|..++.|++...
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 777777777888877 77788888887664
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=1.2 Score=49.94 Aligned_cols=201 Identities=11% Similarity=0.131 Sum_probs=118.9
Q ss_pred CceEEEEEcC-CCCEEEEEEcC------CeEEEEecCCCeEEEEe--------cCCCcceEEEEEecCCCE-EEEEeCCC
Q 001628 39 SGCNKFAYDP-LQKILAAATKD------GRIKLYGRHNNTQALLE--------SSEAVSTKFLQFLENQGI-LLNVTSTN 102 (1042)
Q Consensus 39 ~~v~~la~sp-~~~~LA~gs~d------g~I~iw~~~g~~~~~~~--------~~~~~~v~~l~fs~~~~~-Lvs~s~dg 102 (1042)
+.|..+++.. +..+|++|..+ .+|-|+....+++..+. ++.-.|-+.|-...+.+. |.++...+
T Consensus 277 ~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~~ 356 (644)
T KOG2395|consen 277 GGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQD 356 (644)
T ss_pred cccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCcC
Confidence 4455666653 44577776543 33334432212332222 111223333444444443 44555667
Q ss_pred CEEEEEcCCCceeeeeecCCCeEEEEEeCCCCE-------EEEEeCCCcEEEEEccCCccceeeeeeecccccccCcccc
Q 001628 103 LIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNY-------MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVS 175 (1042)
Q Consensus 103 ~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~-------l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~ 175 (1042)
.++=-|++.|++..-......|+-+.+.|+.+. -++|-.|..|+-||..-+.. ..+. +..++...
T Consensus 357 ~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--~kl~------~~q~kqy~ 428 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--NKLA------VVQSKQYS 428 (644)
T ss_pred cceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc--ceee------eeeccccc
Confidence 788899999996655555555888888887632 35788899999999875441 1111 11111112
Q ss_pred CCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEE
Q 001628 176 GDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEIL 255 (1042)
Q Consensus 176 ~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~ 255 (1042)
......|.+-. ...++++|+.+|.|++||- .++. .-..+.+-..+|..+..+ .+|.+|++.+.. .|.
T Consensus 429 ~k~nFsc~aTT---~sG~IvvgS~~GdIRLYdr-i~~~-------AKTAlPgLG~~I~hVdvt-adGKwil~Tc~t-yLl 495 (644)
T KOG2395|consen 429 TKNNFSCFATT---ESGYIVVGSLKGDIRLYDR-IGRR-------AKTALPGLGDAIKHVDVT-ADGKWILATCKT-YLL 495 (644)
T ss_pred cccccceeeec---CCceEEEeecCCcEEeehh-hhhh-------hhhcccccCCceeeEEee-ccCcEEEEeccc-EEE
Confidence 23344455544 5678999999999999997 3321 112346678899999888 899998776654 566
Q ss_pred EEeCC
Q 001628 256 IWGVP 260 (1042)
Q Consensus 256 iWd~~ 260 (1042)
+-++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66554
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.99 Score=55.05 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCEEEEEEcCC--eEEEEecCCCeE-------EEEe-----cCCCcceEEEEEecCCC-EEEEEeCCCC
Q 001628 39 SGCNKFAYDPLQKILAAATKDG--RIKLYGRHNNTQ-------ALLE-----SSEAVSTKFLQFLENQG-ILLNVTSTNL 103 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg--~I~iw~~~g~~~-------~~~~-----~~~~~~v~~l~fs~~~~-~Lvs~s~dg~ 103 (1042)
..+..++..+|+.+.++-.... .|..||.. ... +.|. .....-..++.|.|.-. ..+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~-~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLE-EFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehH-hhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3456677778877766654443 67778876 211 1111 11223445577887532 2455667888
Q ss_pred EEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 104 IEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 104 I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
|+|..+.... ..........++|++|+|.|+.+++|..+|++.-|...-... ..+|....+ ....|.+
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik------~~ip~Pp~~-----e~yrvl~ 248 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK------SEIPEPPVE-----ENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee------ecccCCCcC-----CCcceeE
Confidence 8887765443 222234556789999999999999999999999997665421 122211111 1368999
Q ss_pred EEEccCCCCCeEEEEECCCe
Q 001628 183 ILPQPTAESKRILIIFRDGL 202 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~ 202 (1042)
|+|-- ...+++.+..++
T Consensus 249 v~Wl~---t~eflvvy~n~t 265 (1405)
T KOG3630|consen 249 VTWLS---TQEFLVVYGNVT 265 (1405)
T ss_pred EEEec---ceeEEEEecccc
Confidence 99984 444555554443
No 388
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.64 E-value=1 Score=51.40 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=96.7
Q ss_pred EEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEe---CC-CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE
Q 001628 62 IKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVT---ST-NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML 137 (1042)
Q Consensus 62 I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s---~d-g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~ 137 (1042)
+.+=|.+|.....+.... ..+..=.|+|++..++-.. .. ..+.++++.+++...+....+.-..-+|+|||++|+
T Consensus 175 l~~~D~dg~~~~~l~~~~-~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~ 253 (425)
T COG0823 175 LALGDYDGYNQQKLTDSG-SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLA 253 (425)
T ss_pred EEEEccCCcceeEecccC-cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEE
Confidence 333344333333333333 3444467888887655442 22 459999999988544444555556677999997766
Q ss_pred E-EeCCC--cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE-CCC--eEEEEeccCC
Q 001628 138 L-GDTAG--KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF-RDG--LISLWDIRES 211 (1042)
Q Consensus 138 s-g~~dG--~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~-~dg--~I~vWd~~~~ 211 (1042)
. ...|| .|+++|+.... +.++. .. .+.-+.=.|+| ||..++-.+ ..| .|.+.|++.+
T Consensus 254 f~~~rdg~~~iy~~dl~~~~--~~~Lt----~~---------~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKN--LPRLT----NG---------FGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEECCCCCccEEEEcCCCCc--ceecc----cC---------CccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCC
Confidence 4 45566 56666776655 21111 00 11122457889 888776655 444 4555666655
Q ss_pred eeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC-Ce--EEEEeCCCc
Q 001628 212 KSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN-GE--ILIWGVPSI 262 (1042)
Q Consensus 212 ~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d-G~--I~iWd~~~~ 262 (1042)
..... ......-..-.|+ |||++++..+.. |. |.+.++.++
T Consensus 317 ~~~ri---------T~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 317 QVTRL---------TFSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ceeEe---------eccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCC
Confidence 43221 1111111155687 999998887753 44 555555543
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.59 E-value=4.1 Score=44.34 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=103.7
Q ss_pred eeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCe-EEEEe---cCCCcceEEEEEecCCCEEEEEeC-------
Q 001628 33 FHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNT-QALLE---SSEAVSTKFLQFLENQGILLNVTS------- 100 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~-~~~~~---~~~~~~v~~l~fs~~~~~Lvs~s~------- 100 (1042)
..+..|+.++++..-..+.+|++... | +.+++.+ +.. ..... .........+...|+|.+.+.--.
T Consensus 60 ~~~~~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 60 RVFPSPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS 137 (307)
T ss_pred EEEECCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence 33556666666655444444444333 3 5555543 233 22222 112234556778888866555433
Q ss_pred --CCCEEEEEcC-CCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEccCCccceeee-eeecccccccCccc
Q 001628 101 --TNLIEVWDID-KKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTA-GKISVLKLDQESSQIVKM-KYIIPLSASHGNEV 174 (1042)
Q Consensus 101 --dg~I~vWd~~-~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~d-G~I~vwd~~~~~~~~~~~-~~~ip~~~~~~~~~ 174 (1042)
...-.||-++ .+. ...+..+-..-..++||||++.|+..... +.|..|+++......... .+.. ..
T Consensus 138 ~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--------~~ 209 (307)
T COG3386 138 EERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--------FD 209 (307)
T ss_pred ccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--------cc
Confidence 0112344444 333 33333333445689999999999988774 788888887421100000 0000 00
Q ss_pred cCCCCEEEEEEccCCCCCeEEEEECCC-eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEec
Q 001628 175 SGDPAVINILPQPTAESKRILIIFRDG-LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYS 250 (1042)
Q Consensus 175 ~~~~~V~~v~~~p~~d~~~lls~~~dg-~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~ 250 (1042)
..++..-.++..- +|++-+++..+| .|.+|+.+ ++.+..+ ......++++||-.++.+.|.+.+.
T Consensus 210 ~~~G~PDG~~vDa--dG~lw~~a~~~g~~v~~~~pd-G~l~~~i--------~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 210 EEPGLPDGMAVDA--DGNLWVAAVWGGGRVVRFNPD-GKLLGEI--------KLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCCceEEeC--CCCEEEecccCCceEEEECCC-CcEEEEE--------ECCCCCCccceEeCCCcCEEEEEec
Confidence 1123333344444 666554555554 88888888 6655543 3444788889998666555544443
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.58 E-value=1.6 Score=52.17 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=97.0
Q ss_pred CCeEEEEecCCCeEEEEec-CCCcceEEEEEecCCCEEEEEe------CCCC--EEEEEcCCCceeeeeecCCCeEEEEE
Q 001628 59 DGRIKLYGRHNNTQALLES-SEAVSTKFLQFLENQGILLNVT------STNL--IEVWDIDKKRLSHVHVCKEEITSFTI 129 (1042)
Q Consensus 59 dg~I~iw~~~g~~~~~~~~-~~~~~v~~l~fs~~~~~Lvs~s------~dg~--I~vWd~~~~~~~~~~~h~~~It~v~~ 129 (1042)
+|.+.-.+.. +...+-.. .....+...+++|+++.++..- .|+. |.+++..... ..+. .....+.-.|
T Consensus 328 ~G~l~~~~~~-~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt-~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQ-GVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVL-EGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCC-CeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeee-cCCCCCCceE
Confidence 6777665544 32222110 1113567789999999887776 2444 5555543322 2222 2234788899
Q ss_pred eCCCCEEEEEeCC-CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEE---
Q 001628 130 MQHSNYMLLGDTA-GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISL--- 205 (1042)
Q Consensus 130 sp~~~~l~sg~~d-G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~v--- 205 (1042)
+|++.+|++.... ..+++.+-.... .+ +.++..... .....++.|..+.|+| ||.+++... +|.|.+
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~g-ql----~~~~vd~ge-~~~~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATG-QL----ARTPVDASA-VASRVPGPISELQLSR--DGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCc-eE----EEEeccCch-hhhccCCCcCeEEECC--CCCEEEEEE-CCEEEEEEE
Confidence 9999888777543 223333322111 01 111100000 0001245799999999 999988776 466665
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
-....|. ... +............+.++.|. .++. |+++..++.-.+|.+.
T Consensus 476 vr~~~G~--~~l-~~~~~l~~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 476 EQTEDGQ--YAL-TNPREVGPGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EeCCCCc--eee-cccEEeecccCCccccceEe-cCCE-EEEEecCCCCceEEEe
Confidence 3333332 111 11111112233346789998 6666 5566666666667654
No 391
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=5.1 Score=45.49 Aligned_cols=160 Identities=11% Similarity=0.113 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCEEEEEEc---CCeEEEEecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEe-CCCCEEEEEcCCCce
Q 001628 40 GCNKFAYDPLQKILAAATK---DGRIKLYGRHN-NTQALLESSEAVSTKFLQFLENQGILLNVT-STNLIEVWDIDKKRL 114 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~---dg~I~iw~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s-~dg~I~vWd~~~~~~ 114 (1042)
....++++|++..+.++.. +++|.+.|... .+... ......+ ..+++.|++..+.... .++.|.+.|..+..+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 6778999999988877766 68888888873 22233 2222234 6699999999666655 789999999777665
Q ss_pred ee-----eeecCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 115 SH-----VHVCKEEITSFTIMQHSNYMLLGDTA---GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 115 ~~-----~~~h~~~It~v~~sp~~~~l~sg~~d---G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
.. ...-...-..+.++|++.++++.... +.+...|...... ....+.. ... ....+..+
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--~~~~~~~----------~~~-~~~~v~~~ 261 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--TATDLPV----------GSG-APRGVAVD 261 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--EEecccc----------ccC-CCCceeEC
Confidence 53 11222344678899999988877665 5888888887652 2221111 011 34558889
Q ss_pred cCCCCCeEEEEECC-CeEEEEeccCCeeEEE
Q 001628 187 PTAESKRILIIFRD-GLISLWDIRESKSIFS 216 (1042)
Q Consensus 187 p~~d~~~lls~~~d-g~I~vWd~~~~~~~~~ 216 (1042)
| ++..+.+.... +.+.+-|..+.+....
T Consensus 262 p--~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 262 P--AGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred C--CCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 9 89888888554 8888888888665554
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.13 E-value=10 Score=41.05 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=86.6
Q ss_pred EcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCE
Q 001628 57 TKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNY 135 (1042)
Q Consensus 57 s~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~ 135 (1042)
+..|.|+.=.-.|.-=..+.......+..+..++++++++++...+...-||..... ...-..-..+|..|.|.|++..
T Consensus 121 ~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~l 200 (302)
T PF14870_consen 121 GDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNL 200 (302)
T ss_dssp ETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-E
T ss_pred cCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCE
Confidence 344544443322322222333444678888899999877777665556788865544 3333345688999999999776
Q ss_pred EEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEE
Q 001628 136 MLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIF 215 (1042)
Q Consensus 136 l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~ 215 (1042)
.+++ ..|.|+.=+.......... ..+|. ....-.+..++|.+ + +.+.+++..|.+ +...+.|+.-.
T Consensus 201 w~~~-~Gg~~~~s~~~~~~~~w~~--~~~~~-------~~~~~~~ld~a~~~--~-~~~wa~gg~G~l-~~S~DgGktW~ 266 (302)
T PF14870_consen 201 WMLA-RGGQIQFSDDPDDGETWSE--PIIPI-------KTNGYGILDLAYRP--P-NEIWAVGGSGTL-LVSTDGGKTWQ 266 (302)
T ss_dssp EEEE-TTTEEEEEE-TTEEEEE-----B-TT-------SS--S-EEEEEESS--S-S-EEEEESTT-E-EEESSTTSS-E
T ss_pred EEEe-CCcEEEEccCCCCcccccc--ccCCc-------ccCceeeEEEEecC--C-CCEEEEeCCccE-EEeCCCCccce
Confidence 5544 8888888772222100111 00111 01123588999997 4 456667777766 55666654322
Q ss_pred EeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEE
Q 001628 216 SMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIW 257 (1042)
Q Consensus 216 ~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iW 257 (1042)
.. .....-...+..+.|. .+..- .+.+.+|.|.-|
T Consensus 267 ~~-----~~~~~~~~n~~~i~f~-~~~~g-f~lG~~G~ll~~ 301 (302)
T PF14870_consen 267 KD-----RVGENVPSNLYRIVFV-NPDKG-FVLGQDGVLLRY 301 (302)
T ss_dssp E------GGGTTSSS---EEEEE-ETTEE-EEE-STTEEEEE
T ss_pred EC-----ccccCCCCceEEEEEc-CCCce-EEECCCcEEEEe
Confidence 21 0011224568889897 44444 444667887766
No 393
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.044 Score=52.56 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 001628 995 MAESKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 1036 (1042)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1042)
.-=+|+.+||||||-|=++||-|++++.+|-.-++.+.++|=
T Consensus 143 eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 143 ENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred HHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999874
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.85 E-value=18 Score=42.94 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred CEEEEEeCCCCEEEEEcCCCceeeeeecC--CCeE---EEEE-----eCCCCEEEEEeCCCcEEEEEccCCccceeeeee
Q 001628 93 GILLNVTSTNLIEVWDIDKKRLSHVHVCK--EEIT---SFTI-----MQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY 162 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~--~~It---~v~~-----sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~ 162 (1042)
+.|+.++.++.|+-.|..++++.-..... ..+. +..+ .-.+..+++++.+|.|..+|..+++.....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~--- 146 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK--- 146 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec---
Confidence 46777777888888898888754333222 1111 1101 112357888999999999999888732111
Q ss_pred ecccccccCccccCCCCEEEEEEccCCCCCeEEEEEC------CCeEEEEeccCCeeEEEe
Q 001628 163 IIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFR------DGLISLWDIRESKSIFSM 217 (1042)
Q Consensus 163 ~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~------dg~I~vWd~~~~~~~~~~ 217 (1042)
.+.. +. .-..+.-.|.-.+..++++.. +|.|.-+|..+|+.+..+
T Consensus 147 ~~~~---------~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 147 KNGD---------YK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccc---------cc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 1100 00 000111122112345666543 688999999999877765
No 395
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.42 E-value=2.7 Score=38.70 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=80.2
Q ss_pred EEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEec-----CCcEE
Q 001628 503 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNR-----NSQHL 577 (1042)
Q Consensus 503 ~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~sp-----dg~~L 577 (1042)
+.-.|......|+.++..|.|.|++........ .+.-..+.+..-+..|++|+-.+ ....|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~--------------~~~~~~i~~LNin~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRT--------------GRQDSDISFLNINQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccc--------------ccccCceeEEECCCceEEEEEEecCCCCCcCEE
Confidence 344677777889999999999999876543321 00001133333457788887655 24578
Q ss_pred EEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCce
Q 001628 578 AVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM 647 (1042)
Q Consensus 578 a~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~ 647 (1042)
++|+. ..+..||+....-+|...+.+ .|.++.+..+.. .+..++++|+ +..|.-||.+ |+.
T Consensus 68 liGt~-t~llaYDV~~N~d~Fyke~~D----Gvn~i~~g~~~~--~~~~l~ivGG-ncsi~Gfd~~-G~e 128 (136)
T PF14781_consen 68 LIGTQ-TSLLAYDVENNSDLFYKEVPD----GVNAIVIGKLGD--IPSPLVIVGG-NCSIQGFDYE-GNE 128 (136)
T ss_pred EEecc-ceEEEEEcccCchhhhhhCcc----ceeEEEEEecCC--CCCcEEEECc-eEEEEEeCCC-CcE
Confidence 88886 567999998877776555543 888888875332 2456666666 6788888877 443
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=5.5 Score=41.38 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=91.0
Q ss_pred CCCCccEEEEEeC-----CCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEE-Ee
Q 001628 455 HSKVKNLFITGHS-----DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIF-KL 528 (1042)
Q Consensus 455 ~~~~~~~l~tg~~-----Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw-~~ 528 (1042)
|++++.+|...-. -|.|-+||.... +.. ..+|..|+..-..+.+.+||+.|+++. |-|... ++
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~-fqr--------vgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdf 189 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREG-FQR--------VGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDF 189 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccc-cce--------ecccccCCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence 7888888776533 377999999854 222 245578888888999999999999764 445554 33
Q ss_pred ccCCccc---ccceeeecccccC---ccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccC-CeEEEecc
Q 001628 529 KYEPHAI---ENSFLSFTGSKKG---NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEG-PTVLYQKH 601 (1042)
Q Consensus 529 ~~~~~~~---~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~-~~~~~~~~ 601 (1042)
...++.. +.++. +-+...| .+|.+| -..+.-.|..|+..+||..++-+-.-|. ... +.++ ++
T Consensus 190 gR~~lNldsMePSlv-lld~atG~liekh~Lp---~~l~~lSiRHld~g~dgtvwfgcQy~G~-----~~d~ppLv--g~ 258 (366)
T COG3490 190 GRTELNLDSMEPSLV-LLDAATGNLIEKHTLP---ASLRQLSIRHLDIGRDGTVWFGCQYRGP-----RNDLPPLV--GH 258 (366)
T ss_pred CccccchhhcCccEE-EEeccccchhhhccCc---hhhhhcceeeeeeCCCCcEEEEEEeeCC-----CccCCcce--ee
Confidence 3222211 00110 0010000 111111 0022355677777766665544332221 000 0010 11
Q ss_pred cccc---------------cCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeeee
Q 001628 602 IASD---------------ISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNL 652 (1042)
Q Consensus 602 ~~~~---------------~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~~ 652 (1042)
...+ -...|-+++..- .++...+|+-.-.+..+||..||.++...+
T Consensus 259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~-----~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANR-----RDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred ccCCCcCcccCCCHHHHHHHHhhhhheeecc-----cCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 1100 113567777663 135555565566788999999999886553
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.99 E-value=5.3 Score=40.22 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=85.3
Q ss_pred eEEEEEecCCCEEEEEeCC---------CCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEE-EEeCCCcEEEEE--c
Q 001628 83 TKFLQFLENQGILLNVTST---------NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYML-LGDTAGKISVLK--L 150 (1042)
Q Consensus 83 v~~l~fs~~~~~Lvs~s~d---------g~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~-sg~~dG~I~vwd--~ 150 (1042)
...-..+|+|++.+-.-.| |.++.|-...+ +..+...-+--..++|+.+.+.++ +-+.+-+|.-|| .
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCC-ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 3334457888774322222 34555543322 222221122335678887776665 455677898888 5
Q ss_pred cCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 151 DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 151 ~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
.++........+.+......++ ..+++ ++... +|+..++..+.|+|...|..+|+.+..+ .....
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~-~~PDG----m~ID~--eG~L~Va~~ng~~V~~~dp~tGK~L~ei--------klPt~ 254 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFES-LEPDG----MTIDT--EGNLYVATFNGGTVQKVDPTTGKILLEI--------KLPTP 254 (310)
T ss_pred CcccccCcceeEEeccCCCcCC-CCCCc----ceEcc--CCcEEEEEecCcEEEEECCCCCcEEEEE--------EcCCC
Confidence 5554333223333322211111 11122 33344 7888888899999999999998776664 55588
Q ss_pred ceeEEEEEccCCCEEEEEe
Q 001628 231 QVTSACWACPIGSKVAVGY 249 (1042)
Q Consensus 231 ~I~~l~~~~~~g~~l~sg~ 249 (1042)
+|+|+||-.++-+.+.+..
T Consensus 255 qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ceEEEEecCCCccEEEEEe
Confidence 9999999855545544443
No 398
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.98 E-value=21 Score=41.08 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=77.0
Q ss_pred CcCceeeeeecccCceEEEEEcCCCCEEEEEEc-CC----eEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQKILAAATK-DG----RIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS 100 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~-dg----~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~ 100 (1042)
.+|+..+..-+-...+..++++|++++||.+-+ .| .|+++|...+....-.... .....+.|.+++..|+....
T Consensus 111 llD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 111 LLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEEC
T ss_pred EEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEe
Confidence 466666554332344557899999999998843 34 4999999733211111111 22233899999877766653
Q ss_pred CC-----------CEEEEEcCCCc---eeeeeecCCC--eEEEEEeCCCCEEEEEeCC----CcEEEEEccCC
Q 001628 101 TN-----------LIEVWDIDKKR---LSHVHVCKEE--ITSFTIMQHSNYMLLGDTA----GKISVLKLDQE 153 (1042)
Q Consensus 101 dg-----------~I~vWd~~~~~---~~~~~~h~~~--It~v~~sp~~~~l~sg~~d----G~I~vwd~~~~ 153 (1042)
+. .|+.|.+.+.. ...+...... ...+..++++++|++.... ..+++.++...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 33 37888888775 2333333332 5678899999998876543 34677777664
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.96 E-value=6.8 Score=41.52 Aligned_cols=154 Identities=10% Similarity=0.091 Sum_probs=90.8
Q ss_pred ceEEEEEecCCCEEEEEe---CCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-ccCCccce
Q 001628 82 STKFLQFLENQGILLNVT---STNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLK-LDQESSQI 157 (1042)
Q Consensus 82 ~v~~l~fs~~~~~Lvs~s---~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd-~~~~~~~~ 157 (1042)
.+...+.+++++.++... ....+.++.........+ ....++.-.|++++...++...+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc--
Confidence 677799999999888777 334466666544332222 223678888999987777777677777774 223221
Q ss_pred eeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE---CCCeEEEEeccCCee--EEEeCCcccccccccCCce
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF---RDGLISLWDIRESKS--IFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~---~dg~I~vWd~~~~~~--~~~~~g~~~~~~~~~~~~I 232 (1042)
. +..+..... .+.|+.+.++| ||.+++... .++.|.+=-+..+.. .... .............+
T Consensus 101 ~--~~~v~~~~~-------~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l-~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 101 E--PVEVDWPGL-------RGRITALRVSP--DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL-TGPRRVAPPLLSDV 168 (253)
T ss_pred e--eEEeccccc-------CCceEEEEECC--CCcEEEEEEecCCCCeEEEEEEEeCCCCCccee-ccceEecccccCcc
Confidence 1 111111111 12899999999 999998877 346666655432110 0000 11112222345689
Q ss_pred eEEEEEccCCCEEEEEecCC
Q 001628 233 TSACWACPIGSKVAVGYSNG 252 (1042)
Q Consensus 233 ~~l~~~~~~g~~l~sg~~dG 252 (1042)
+.+.|. +++.+++.+...+
T Consensus 169 ~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred eeeeec-CCCEEEEEeCCCC
Confidence 999998 6777666655443
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.38 E-value=5.7 Score=47.19 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 563 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 563 ~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
...+-+.-|.-++..++-+....+.|||.+++.+.|..... ....|..+.|.... +++.+++.+-...|.++--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--~~~~I~dLDWtst~----d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--EDDPIRDLDWTSTP----DGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--CCCceeeceeeecC----CCCEEEEEEcCcEEEEEEc
Confidence 44555555655555555555567999999999877777763 35699999999421 7888888888999999963
Q ss_pred CCCceeeeeecCCCCC--CCceEEEEecCCCcCccCccccccccCCCCCCC-CCCCCCCcEEEEEecCceEEEecC
Q 001628 643 DNGNMLSTNLIHPKKP--SRALFMQILNGQDGLARGANLSNVAGMNKGSPK-ENAVPKQWFVLLCSEKAACAYSLS 715 (1042)
Q Consensus 643 ~tg~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~ll~~~~~~i~i~~~~ 715 (1042)
..-... ...| .++..+.+.+- +..++ ...|..++.+++.+.+.+.||+-.
T Consensus 104 ~R~dy~------~~~p~w~~i~~i~i~~~-----------------T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYT------NKGPSWAPIRKIDISSH-----------------TPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred cchhhh------cCCcccceeEEEEeecC-----------------CCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 211111 1111 11111222110 01112 135677888999999999999754
No 401
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.15 E-value=26 Score=41.78 Aligned_cols=31 Identities=13% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 607 SSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 607 ~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
...|..+.|.+ ++..+++....|.|.+||..
T Consensus 129 ~~kvv~Ik~~~------~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSS------DGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEec------CCCEEEEEEcCCcEEEEecc
Confidence 34899999998 89999999999999999974
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.05 E-value=20 Score=39.12 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=103.9
Q ss_pred EEEcCCCC-EEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce-eeeeecC
Q 001628 44 FAYDPLQK-ILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL-SHVHVCK 121 (1042)
Q Consensus 44 la~sp~~~-~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~-~~~~~h~ 121 (1042)
-.|+++.. ++.+--..++|.-|+........+..+... .++.....++.|+++. .-+.+++.+++.. ..+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCc--ccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 34788877 555556668899998863555666666533 3344444444666553 3456677665554 3222211
Q ss_pred -----CCeEEEEEeCCCCEEEEEeC---------CCcEEEEEcc-CCccceeeeeeecccccccCccccCCCCEEEEEEc
Q 001628 122 -----EEITSFTIMQHSNYMLLGDT---------AGKISVLKLD-QESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 122 -----~~It~v~~sp~~~~l~sg~~---------dG~I~vwd~~-~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~ 186 (1042)
..-..+.+.|+|.+-+.-.. ...=.+|.++ .+. ...+. ..+-..-++|+|+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--~~~l~------------~~~~~~~NGla~S 171 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--VVRLL------------DDDLTIPNGLAFS 171 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC--EEEee------------cCcEEecCceEEC
Confidence 34456778888876554322 0011344443 222 11110 0011234569999
Q ss_pred cCCCCCeEEEEECC-CeEEEEeccC--CeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC-eEEEEeCC
Q 001628 187 PTAESKRILIIFRD-GLISLWDIRE--SKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG-EILIWGVP 260 (1042)
Q Consensus 187 p~~d~~~lls~~~d-g~I~vWd~~~--~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG-~I~iWd~~ 260 (1042)
| |+..++.+-.. +.|.-|++.. +.... .........+....-.++.. .+|.+.+++..+| .|.+|+..
T Consensus 172 p--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~---~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 172 P--DGKTLYVADTPANRIHRYDLDPATGPIGG---RRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred C--CCCEEEEEeCCCCeEEEEecCcccCccCC---cceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCC
Confidence 9 88877777654 7777777763 11000 00001112233444556665 6777776655554 88888877
No 403
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.99 E-value=15 Score=37.06 Aligned_cols=163 Identities=14% Similarity=0.254 Sum_probs=92.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEecc---c---eEEEE-EeccCC
Q 001628 460 NLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQS---G---MVRIF-KLKYEP 532 (1042)
Q Consensus 460 ~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~d---G---~V~vw-~~~~~~ 532 (1042)
+.|+.+...+.|.+|++......++.++. .-+.|..+.++..|.+|++--.+ . .+|+| +|....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 44544466677999999966666666552 12689999999999999985442 2 56775 232211
Q ss_pred cccccceeeecc-----cccC-ccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeE-------E-E
Q 001628 533 HAIENSFLSFTG-----SKKG-NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTV-------L-Y 598 (1042)
Q Consensus 533 ~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~-------~-~ 598 (1042)
......-.++.+ ...+ ....+..+.+ -.+.++.+++.+|-.+-|++|+. +.+.||.+..... + |
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEec
Confidence 110000001111 1000 1111111222 23578899999998888888886 4678887654333 2 2
Q ss_pred ecccccccCC-CeEEEEEEeeecCCCCceEEEEEeCCceEEEEEC
Q 001628 599 QKHIASDISS-GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 599 ~~~~~~~~~~-~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~ 642 (1042)
..+....|.+ .+..++|. +.|++..+ |-.++|+.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic--------~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAIC--------EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEE--------eeEEEEec-CCEEEEEEE
Confidence 2222221222 35666666 67888887 556777764
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.75 E-value=11 Score=46.05 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEE-----EecCC-----Ce--EE-E-------EecCCCcceEEEEEecC---CCEE
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKL-----YGRHN-----NT--QA-L-------LESSEAVSTKFLQFLEN---QGIL 95 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~i-----w~~~g-----~~--~~-~-------~~~~~~~~v~~l~fs~~---~~~L 95 (1042)
..|..+.++|+|++||..+..|-+.+ |+.+| .. .+ + +.......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47889999999999999998875444 54332 11 11 1 22344568999999996 5799
Q ss_pred EEEeCCCCEEEEEcCCCc
Q 001628 96 LNVTSTNLIEVWDIDKKR 113 (1042)
Q Consensus 96 vs~s~dg~I~vWd~~~~~ 113 (1042)
+.-..||++++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997644
No 405
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.44 E-value=28 Score=39.06 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCeEEEEE---------CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 190 ESKRILIIF---------RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 190 d~~~lls~~---------~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
|+.+++..+ ..+.+.+||+.+++.... ......+....|+ |+|+.++... ++.|.+++..
T Consensus 3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l---------~~~~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 3 DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL---------TPPPPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES---------S-EETTBSEEEE--SSSTEEEEEE-TTEEEEESST
T ss_pred CCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC---------cCCccccccceee-cCCCeeEEEe-cCceEEEECC
Confidence 677777653 346788999999764432 2225678889998 9999998886 4689999987
Q ss_pred Ccccc
Q 001628 261 SILNL 265 (1042)
Q Consensus 261 ~~~~~ 265 (1042)
++...
T Consensus 72 ~~~~~ 76 (353)
T PF00930_consen 72 TGQET 76 (353)
T ss_dssp TSEEE
T ss_pred CCCeE
Confidence 76433
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.40 E-value=4.5 Score=48.45 Aligned_cols=176 Identities=16% Similarity=0.120 Sum_probs=99.0
Q ss_pred ccEEEEEeCCCcEEEEeCCCCceee----eeecc--cccccc----C--CCCCCCeEEEEEeCC--CCEEEEEeccceEE
Q 001628 459 KNLFITGHSDGAINFWDVSCPLFLL----ILSLK--QQSEKD----F--SLSGIPLTALYYDGT--SRVLVSGDQSGMVR 524 (1042)
Q Consensus 459 ~~~l~tg~~Dg~IriWd~~~~~~~~----l~~l~--~~~~~~----~--~~~~~~V~~l~fsp~--~~~Lasg~~dG~V~ 524 (1042)
+++++++. .+.|.||+.......+ .+.+. ++.... + ......|+.|....- ...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55677665 6789999987543321 11111 111000 0 012234666655543 46889999999999
Q ss_pred EEEeccCCcccccceeeecccccC--ccceeeeEEEeecCCCeEEEEEe--cCCcEEEEEecCCcEEEEeccCC--eEEE
Q 001628 525 IFKLKYEPHAIENSFLSFTGSKKG--NSHIIHSVKVMKINGSIISLNMN--RNSQHLAVGSDQGYVYLLDTEGP--TVLY 598 (1042)
Q Consensus 525 vw~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~V~~l~~s--pdg~~La~gs~dg~V~vwD~~~~--~~~~ 598 (1042)
+|....-....+.. . .+...+ .....|-..+ .....+++|++. ...++||+++....|.||-.... +...
T Consensus 128 ~Yyt~~I~~~i~~~-~--~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 128 AYYTETIIEAIERF-S--EDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred EEEHHHHHHHHHhh-c--cccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 99875211100000 0 000000 0000111222 234688999998 77899999999999999855431 1111
Q ss_pred ecccccccCCCeEEEEEEeeecCCCCc-eEEEEEeCCceEEEEEC
Q 001628 599 QKHIASDISSGIVSLQFETCSLQGFEK-NFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 599 ~~~~~~~~~~~V~sl~fs~~~~~~~~~-~~L~s~s~Dg~V~vwd~ 642 (1042)
.. ...+...|-+|+|-+...++. | .+|++++-.|.+.+|+.
T Consensus 204 ~~--s~~~~hNIP~VSFl~~~~d~~-G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VP--SHQHSHNIPNVSFLDDDLDPN-GHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc--ccccccCCCeeEeecCCCCCc-cceEEEEEeccCcEEEEEE
Confidence 11 111445899999997443321 3 48888999999999886
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=90.85 E-value=11 Score=41.99 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=87.0
Q ss_pred cCceEEEEEcCCCCEEEEEEcCCeEEE-EecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce-e
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKL-YGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL-S 115 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~i-w~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~-~ 115 (1042)
.+.+.+++++|++.++++|.. |.+.. ++..|+.-..........+..+.+.++++.++. +..|.+.+=..+.+.. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 456788999999888777664 65543 333322222334455578888999999865554 5667665333444441 1
Q ss_pred eeeec----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCC
Q 001628 116 HVHVC----KEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAES 191 (1042)
Q Consensus 116 ~~~~h----~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~ 191 (1042)
..... ...++.+.+.+++..++ ++.+|.|.. ..+.+.. ....+. . ..-......+.|.. .
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t-W~~~~~----~------~~~~~~~~~~~~~~---~ 313 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT-WEKDPV----G------EEVPSNFYKIVFLD---P 313 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC-CeECCc----C------CCCCcceEEEEEeC---C
Confidence 11111 13578889998777555 445675543 3343321 111100 0 00123567777774 4
Q ss_pred CeEEEEECCCeEEEEec
Q 001628 192 KRILIIFRDGLISLWDI 208 (1042)
Q Consensus 192 ~~lls~~~dg~I~vWd~ 208 (1042)
+..++++..|.|.-|+-
T Consensus 314 ~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 314 EKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CceEEECCCceEEEecC
Confidence 56677888899877653
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=2.4 Score=47.59 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=79.5
Q ss_pred eeeecccCceEEEEEcCCCC-------EEEEEEcCCeEEEEecC--CC-eEEEEecCC---CcceEEEEEecCCCEEEEE
Q 001628 32 VFHYGFPSGCNKFAYDPLQK-------ILAAATKDGRIKLYGRH--NN-TQALLESSE---AVSTKFLQFLENQGILLNV 98 (1042)
Q Consensus 32 ~~~~G~~~~v~~la~sp~~~-------~LA~gs~dg~I~iw~~~--g~-~~~~~~~~~---~~~v~~l~fs~~~~~Lvs~ 98 (1042)
+..+.+...|+-+.+.|+.+ .=.+|-+|..|.=||.. |. .....+++. .....|.+-..+| ++|+|
T Consensus 369 VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~Ivvg 447 (644)
T KOG2395|consen 369 VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVG 447 (644)
T ss_pred eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEe
Confidence 44466666677788887653 12457778889999865 32 333333332 2344445555565 99999
Q ss_pred eCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001628 99 TSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLK 149 (1042)
Q Consensus 99 s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd 149 (1042)
+.+|.|++||--..+ ...+.+...+|+.+.++.+|+||+..+.. .+.+.+
T Consensus 448 S~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~ 498 (644)
T KOG2395|consen 448 SLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLID 498 (644)
T ss_pred ecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEE
Confidence 999999999974433 56778888999999999999998766655 444444
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.40 E-value=5.2 Score=45.92 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=84.4
Q ss_pred cceEEEEEecCCCEEEEEe--CCCCEEEEEcCCCceeeeeecCCCeEEEEEeCCC----CEEEEEeCCCcEEEEEccCCc
Q 001628 81 VSTKFLQFLENQGILLNVT--STNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHS----NYMLLGDTAGKISVLKLDQES 154 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s--~dg~I~vWd~~~~~~~~~~~h~~~It~v~~sp~~----~~l~sg~~dG~I~vwd~~~~~ 154 (1042)
.|+..++|....+.+++.- .+|.+++=| ....+.=..|..+.|.|-+ ..|+.---...|.||.+....
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 3666777776555444432 222222211 1122223458899998864 334444456689999976322
Q ss_pred ccee--eeeeecccccccCccccCCCCE--EEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCC
Q 001628 155 SQIV--KMKYIIPLSASHGNEVSGDPAV--INILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK 230 (1042)
Q Consensus 155 ~~~~--~~~~~ip~~~~~~~~~~~~~~V--~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~ 230 (1042)
.... .+..+- +....-+| .++.||| ....|++-.....=.+.++..... ..+......+
T Consensus 94 ~e~~K~l~sQtc--------Ei~e~~pvLpQGCVWHP--k~~iL~VLT~~dvSV~~sV~~d~s-------rVkaDi~~~G 156 (671)
T PF15390_consen 94 TERNKLLMSQTC--------EIREPFPVLPQGCVWHP--KKAILTVLTARDVSVLPSVHCDSS-------RVKADIKTSG 156 (671)
T ss_pred cccccceeeeee--------eccCCcccCCCcccccC--CCceEEEEecCceeEeeeeeeCCc-------eEEEeccCCc
Confidence 1000 010000 01111122 3578999 677666666555444676654321 1111234567
Q ss_pred ceeEEEEEccCCCEEEEEecC-CeEEEEeCCC
Q 001628 231 QVTSACWACPIGSKVAVGYSN-GEILIWGVPS 261 (1042)
Q Consensus 231 ~I~~l~~~~~~g~~l~sg~~d-G~I~iWd~~~ 261 (1042)
.|.|.||. +||+.|+++-.. =.-++||-..
T Consensus 157 ~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 157 LIHCACWT-KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEEEEEec-CcCCEEEEEeCCeEEEEEecCch
Confidence 89999999 899988876443 3467898654
No 410
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=47 Score=39.68 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=43.3
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccc-cccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEE
Q 001628 563 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIA-SDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLD 641 (1042)
Q Consensus 563 ~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~-~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd 641 (1042)
+.+..|-|+. ..-|.+-..||+|+||++.+..+... ... ....+.|.-..|.. +|-.+ -+.+|.+.+-+
T Consensus 84 ~~lI~mgWs~-~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~------~GVav--lt~~g~v~~i~ 153 (829)
T KOG2280|consen 84 GELIGMGWSD-DEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFH------NGVAV--LTVSGQVILIN 153 (829)
T ss_pred CCeeeecccC-CceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEec------CceEE--EecCCcEEEEc
Confidence 5788999995 45566678999999999987665421 110 11122466566553 45433 34456666665
Q ss_pred CC
Q 001628 642 SD 643 (1042)
Q Consensus 642 ~~ 643 (1042)
..
T Consensus 154 ~~ 155 (829)
T KOG2280|consen 154 GV 155 (829)
T ss_pred CC
Confidence 43
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.08 E-value=20 Score=36.27 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=84.4
Q ss_pred CEEEEEeCCCCEEEEEcCCCc--eeeeeecCCCeEEEEEeCCCCEEEEEeCCC------cEEEE-EccCC--c---ccee
Q 001628 93 GILLNVTSTNLIEVWDIDKKR--LSHVHVCKEEITSFTIMQHSNYMLLGDTAG------KISVL-KLDQE--S---SQIV 158 (1042)
Q Consensus 93 ~~Lvs~s~dg~I~vWd~~~~~--~~~~~~h~~~It~v~~sp~~~~l~sg~~dG------~I~vw-d~~~~--~---~~~~ 158 (1042)
..|..+...+.|.+|++.... +......-+.|..+.++..|+||++--++. .+|+| |++.. . .+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 456555777889999998443 444445558999999999999999864422 55665 23222 1 1000
Q ss_pred eeeeec--ccccccCc-----cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEE---EeCCccccccccc
Q 001628 159 KMKYII--PLSASHGN-----EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIF---SMGGNVLQSVYHE 228 (1042)
Q Consensus 159 ~~~~~i--p~~~~~~~-----~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~---~~~g~~~~~~~~~ 228 (1042)
...+.. +.....+. +.+-..++.+++..|. .| .|++|+. +.+.+|.+....... .+..-....+..+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~-tG-~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV-TG-NLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCC-CC-CEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 011111 00011110 2233457888999994 44 4676665 456699887644310 0000000111112
Q ss_pred -CCceeEEEEEccCCCEEEEEecCCeEEEEeC
Q 001628 229 -TKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 229 -~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~ 259 (1042)
.-....+++- +.++|..+.. .+++..+
T Consensus 186 ~~~~p~~v~ic---~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC---EGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred cCceEEEEEEE---eeEEEEecCC-EEEEEEE
Confidence 2234555553 6677766654 5555544
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.07 E-value=2.1 Score=51.13 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=81.2
Q ss_pred ccCceEEEEEcCC--CCEEEEEEcCCeEEEEecC--------C-----------CeEEEEecCCCcceEEEEEe--cCCC
Q 001628 37 FPSGCNKFAYDPL--QKILAAATKDGRIKLYGRH--------N-----------NTQALLESSEAVSTKFLQFL--ENQG 93 (1042)
Q Consensus 37 ~~~~v~~la~sp~--~~~LA~gs~dg~I~iw~~~--------g-----------~~~~~~~~~~~~~v~~l~fs--~~~~ 93 (1042)
.|+.|..+....- ...|++++.||.|.+|-.+ . .+...+...-...+..|+++ ...+
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce
Confidence 6778888877654 4689999999999999653 0 01112333345678889998 7776
Q ss_pred EEEEEeCCCCEEEEEcCC--Cc--eeeeeecCCCeEEEEEeCCC---C---EEEEEeCCCcEEEEEcc
Q 001628 94 ILLNVTSTNLIEVWDIDK--KR--LSHVHVCKEEITSFTIMQHS---N---YMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 94 ~Lvs~s~dg~I~vWd~~~--~~--~~~~~~h~~~It~v~~sp~~---~---~l~sg~~dG~I~vwd~~ 151 (1042)
++|+++....|.||-... .+ ......|...|.+|+|.++. . +|+.++-.|.+.+|++.
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 777777777788876544 22 22233477889999998765 2 78889999999999884
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.76 E-value=10 Score=42.90 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCEEEEEE-----------cCC-eEEEEec---CCCeE--EEEecCCCcceEEEEEecCCCEEEEEeCC
Q 001628 39 SGCNKFAYDPLQKILAAAT-----------KDG-RIKLYGR---HNNTQ--ALLESSEAVSTKFLQFLENQGILLNVTST 101 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs-----------~dg-~I~iw~~---~g~~~--~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d 101 (1042)
..+.+|+|+++|++.++-. ..+ +|.+++- +|... .++...- .....|+|.+++ .+| ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-EEE-eCCC
Confidence 5678999999999876643 223 7888754 23332 2332222 234668899998 444 4444
Q ss_pred CCEEEEEcCCC-----c---eee-eee----cCCCeEEEEEeCCCCEEEE
Q 001628 102 NLIEVWDIDKK-----R---LSH-VHV----CKEEITSFTIMQHSNYMLL 138 (1042)
Q Consensus 102 g~I~vWd~~~~-----~---~~~-~~~----h~~~It~v~~sp~~~~l~s 138 (1042)
...++.|.+.. + +.. +.. +......++|.|++.+.++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence 33334454321 2 111 111 1234678999999865443
No 414
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.70 E-value=9.7 Score=35.17 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecCC---------CeEEEEecCCCcceEEEEEec----CCCEEEEEeCCCCEEEE
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRHN---------NTQALLESSEAVSTKFLQFLE----NQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~g---------~~~~~~~~~~~~~v~~l~fs~----~~~~Lvs~s~dg~I~vW 107 (1042)
|+.-.|+.....||.++.-|.|.|++... .....+... ..|++|+--+ +++-++..+....|..|
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 34567899999999999999999998541 122333332 3455565332 22334444566889999
Q ss_pred EcCCCceeeeeecCCCeEEEEEeC----CCCEEEEEeCCCcEEEEEccCCc
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQ----HSNYMLLGDTAGKISVLKLDQES 154 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~v~~sp----~~~~l~sg~~dG~I~vwd~~~~~ 154 (1042)
|++...-...+..+..|.++.+-. ...++++| .+..|.-||.+..+
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 999888555556667788887742 23455555 35566667666554
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.66 E-value=1.9 Score=48.73 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=68.9
Q ss_pred EEEEecCCcEEEEEecCCcEEE---Eecc-----CC--eEEEecccccccCCCeEEEEEEeeecC-----CCCceEEEEE
Q 001628 567 SLNMNRNSQHLAVGSDQGYVYL---LDTE-----GP--TVLYQKHIASDISSGIVSLQFETCSLQ-----GFEKNFLVIA 631 (1042)
Q Consensus 567 ~l~~spdg~~La~gs~dg~V~v---wD~~-----~~--~~~~~~~~~~~~~~~V~sl~fs~~~~~-----~~~~~~L~s~ 631 (1042)
.++.+|++.+||.+..+..|.+ |+.. .+ .+.+.+.+.......|+++.+-|+... .+|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999998887776 6431 11 222555544322358999999998443 3688999999
Q ss_pred eCCceEEEEECCCCceeeeeecCCCCCCCceEEEEec
Q 001628 632 TKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILN 668 (1042)
Q Consensus 632 s~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~ 668 (1042)
..+|.|++|... |.++....++ +.+++.+..-.
T Consensus 86 ~ssG~vrfyte~-G~LL~~Q~~h---~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVLLLSQLLH---EEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEecc-chHHHHHhcC---ccceEEEEecc
Confidence 999999999974 8887655444 45566666554
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=26 Score=41.71 Aligned_cols=198 Identities=13% Similarity=0.185 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeee-
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHV- 117 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~- 117 (1042)
+.+.+++.+|....=+. +---.|+||+..|.....+...+. .+-.|.|+.+. .|++...+|+++|+++....+...
T Consensus 44 gGpIAV~r~p~~~~~~~-~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY-SARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEeccccccccc-ccceeEEEEeccccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecchhhhcccc
Confidence 34566666663221111 222459999999777666555554 45559999987 799999999999999876553331
Q ss_pred ---eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-ccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 118 ---HVCKEEITSFTIMQHSNYMLLGDTAGKISVLK-LDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 118 ---~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
......|.-+.|..+| +++-+.+|.+.+.+ +.... +..++ .+|.+.. +.....+ +.|......
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~--~~~~~-diP~~~~-------~~~~Wt~-~~~~~~~~~ 187 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPK--LRKMP-DIPYNEL-------PKSCWTV-FQPHRQSTI 187 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcch--hhhCC-CCCCccC-------CCcceeE-ecCCCccee
Confidence 1222334444444444 34444455555543 22211 11111 1111111 0111111 111001111
Q ss_pred EEEEE-CCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 194 ILIIF-RDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 194 lls~~-~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
++-.. ..+.. +....++... +..+......+..++.+ |+..+|+--..+|.|.+-+.+-
T Consensus 188 ll~v~~~v~~~-~~q~~~~~~q-------~~~~~~~~~~~~ki~VS-~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 188 LLDVDVAVGLH-ICQVEESRVQ-------LHALSWPNSSVVKISVS-PNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred EEeechhhhhc-ccceeccccc-------ccccCCCCceEEEEEEc-CCcceEEEEecCCcEEEEecch
Confidence 21111 11111 2222222100 11112223566777787 8999999999999998887764
No 417
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.54 E-value=39 Score=37.62 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=43.7
Q ss_pred EEecCCCEEEEEeC-CC--CEEEEEcCCCceeeeeecCCC-eEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee
Q 001628 87 QFLENQGILLNVTS-TN--LIEVWDIDKKRLSHVHVCKEE-ITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY 162 (1042)
Q Consensus 87 ~fs~~~~~Lvs~s~-dg--~I~vWd~~~~~~~~~~~h~~~-It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~ 162 (1042)
+|.++|+.|+-+++ || .+.+-|+.++++..+...++. .....++|+++.++-...+..|+..|+++.+ ....|
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e---~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE---ERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-----EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc---EEEEE
Confidence 46778876665554 54 477788999997777665432 3245567888887655555688889998875 33447
Q ss_pred ecccccc
Q 001628 163 IIPLSAS 169 (1042)
Q Consensus 163 ~ip~~~~ 169 (1042)
.+|..+.
T Consensus 119 ~~p~~~~ 125 (386)
T PF14583_consen 119 EVPDDWK 125 (386)
T ss_dssp E--TTEE
T ss_pred ECCcccc
Confidence 7765443
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.42 E-value=42 Score=37.82 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=79.3
Q ss_pred ecccCceEEEEEcCCCCEEEEEEcC------CeEEEEecCC-CeEEEEecCC--CcceEEEEEecCCCEEEEEeC-----
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKD------GRIKLYGRHN-NTQALLESSE--AVSTKFLQFLENQGILLNVTS----- 100 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~d------g~I~iw~~~g-~~~~~~~~~~--~~~v~~l~fs~~~~~Lvs~s~----- 100 (1042)
+..|+++.|+ |+|++++++-.| |.+.++|.++ ++........ ..--..+-|.|..+.++|..-
T Consensus 129 ~s~PHT~Hcl---p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~ 205 (461)
T PF05694_consen 129 LSRPHTVHCL---PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSM 205 (461)
T ss_dssp EEEEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHH
T ss_pred CCCCceeeec---CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhh
Confidence 3456666666 688888776433 6678888772 2333333222 122334667787777877642
Q ss_pred ---------------CCCEEEEEcCCCceeeeeecC--C-CeEEEEEe--CCCCEEEEEeC-CCcEEEEEc-cCCcccee
Q 001628 101 ---------------TNLIEVWDIDKKRLSHVHVCK--E-EITSFTIM--QHSNYMLLGDT-AGKISVLKL-DQESSQIV 158 (1042)
Q Consensus 101 ---------------dg~I~vWd~~~~~~~~~~~h~--~-~It~v~~s--p~~~~l~sg~~-dG~I~vwd~-~~~~~~~~ 158 (1042)
.+++.|||+.++++....... + -..-+.|. |+..+=++|+. .++|..|-- +.+.- -.
T Consensus 206 ~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~a 284 (461)
T PF05694_consen 206 FEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-AA 284 (461)
T ss_dssp HTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-EE
T ss_pred cccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-ee
Confidence 357999999999955444433 2 23345554 56667666654 445554443 33321 11
Q ss_pred eeeeecccccccCccc--------cCCCCEEEEEEccCCCCCeEEEEE-CCCeEEEEeccCCe
Q 001628 159 KMKYIIPLSASHGNEV--------SGDPAVINILPQPTAESKRILIIF-RDGLISLWDIRESK 212 (1042)
Q Consensus 159 ~~~~~ip~~~~~~~~~--------~~~~~V~~v~~~p~~d~~~lls~~-~dg~I~vWd~~~~~ 212 (1042)
.....+|.....+-.. .-++-|+.|..+. |..+|.+.+ -.|.|+.||+....
T Consensus 285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEE--EE--SS---GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SSTT
T ss_pred eEEEECCCcccCcccccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCC
Confidence 1112233221111100 1135688999998 777776665 79999999998743
No 419
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.32 E-value=22 Score=40.38 Aligned_cols=149 Identities=8% Similarity=0.007 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeE-EEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc----
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQ-ALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---- 113 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~-~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---- 113 (1042)
++...+...+++.++++|..-..++-|+.. ... .....+....+..+.|.+++..++++ .+|.+. |..+.++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPG-QPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCC-CcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 334556677888888887764333335443 332 33445555778889999998766554 556644 4444443
Q ss_pred --eeeeee--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCC
Q 001628 114 --LSHVHV--CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 114 --~~~~~~--h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~ 189 (1042)
...... -...++.+.|.+++..++ ++.+|.+....-.... ....+ .. ..-....+.+.|.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~G~t--W~~~~----~~------~~~~~~ly~v~f~~-- 380 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDGGKS--WKRDK----GA------DNIAANLYSVKFFD-- 380 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCCCcc--eeEcc----cc------CCCCcceeEEEEcC--
Confidence 122111 113488999987777655 4567777666433322 11110 00 00134677888875
Q ss_pred CCCeEEEEECCCeEEEE
Q 001628 190 ESKRILIIFRDGLISLW 206 (1042)
Q Consensus 190 d~~~lls~~~dg~I~vW 206 (1042)
.+...+.+.+|.|.-|
T Consensus 381 -~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 -DKKGFVLGNDGVLLRY 396 (398)
T ss_pred -CCceEEEeCCcEEEEe
Confidence 4668888889988554
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=89.16 E-value=41 Score=37.36 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=85.2
Q ss_pred CcceEEEEEecCCCEEEEEeCCCCEEE-EEcCCCceeeee-ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccce
Q 001628 80 AVSTKFLQFLENQGILLNVTSTNLIEV-WDIDKKRLSHVH-VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQI 157 (1042)
Q Consensus 80 ~~~v~~l~fs~~~~~Lvs~s~dg~I~v-Wd~~~~~~~~~~-~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~ 157 (1042)
...+..+.+.+++.++ .++..|.+.. ++-....-.... .-...++++.+.+++..+++| ..|.+++=.-+.+.. .
T Consensus 172 ~g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-W 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-W 248 (334)
T ss_pred cceEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-c
Confidence 4567889999988554 5555565543 222222222222 234678999999999877765 467664322333220 1
Q ss_pred eeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEE
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACW 237 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~ 237 (1042)
... ..|. ......+.++.+.| ++. +++++.+|.+ +...+.++.-... .....-......+.|
T Consensus 249 ~~~--~~~~-------~~~~~~l~~v~~~~--~~~-~~~~G~~G~v-~~S~d~G~tW~~~-----~~~~~~~~~~~~~~~ 310 (334)
T PRK13684 249 SKP--IIPE-------ITNGYGYLDLAYRT--PGE-IWAGGGNGTL-LVSKDGGKTWEKD-----PVGEEVPSNFYKIVF 310 (334)
T ss_pred ccc--cCCc-------cccccceeeEEEcC--CCC-EEEEcCCCeE-EEeCCCCCCCeEC-----CcCCCCCcceEEEEE
Confidence 100 0000 00123577889987 554 6667778877 3445544322110 000112246778888
Q ss_pred EccCCCEEEEEecCCeEEEEeCC
Q 001628 238 ACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 238 ~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
. .++ .....+..|.|..|+-.
T Consensus 311 ~-~~~-~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 311 L-DPE-KGFVLGQRGVLLRYVGS 331 (334)
T ss_pred e-CCC-ceEEECCCceEEEecCC
Confidence 6 444 44556778899888654
No 421
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=14 Score=46.62 Aligned_cols=157 Identities=14% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEE--------EeCCCCEEEEEeccceEEEE
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY--------YDGTSRVLVSGDQSGMVRIF 526 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~--------fsp~~~~Lasg~~dG~V~vw 526 (1042)
|++-++.-+| -|..+.+|+...+...+.+ .+-...|..|. |-|.=++|.+-..--.|.|+
T Consensus 87 FpeI~RaWiT--iDn~L~lWny~~~~e~~~~----------d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 87 FPEIGRAWIT--IDNNLFLWNYESDNELAEY----------DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred chhhcceEEE--eCCeEEEEEcCCCCccccc----------cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 3333444444 5778999999875332222 23334455544 23333444444445567787
Q ss_pred EeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEec--cCCeEE-------
Q 001628 527 KLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDT--EGPTVL------- 597 (1042)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~--~~~~~~------- 597 (1042)
-+.......+.++. ..+ ..+......|+++....+|+.+.+| .||. ||.+ +...-.
T Consensus 155 gV~~~~~~~~~~~f--------~~~----~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIF--------NTS----FKISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred EEEeccccCccccc--------ccc----eeeecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhccccc
Confidence 77654443322321 222 3333445678999977666666554 5554 4443 111110
Q ss_pred --Eecc-----------cccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEEECCC
Q 001628 598 --YQKH-----------IASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 598 --~~~~-----------~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
+... ....+..+|..|.... ...+|++-+..|+|.+||+..
T Consensus 220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~------SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN------SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccCchhHHHHhhhhhhcCCCCCCCcceeeEecc------ccceeeeeccCceEEEEEccC
Confidence 0000 0012355888888886 778999999999999999764
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.01 E-value=14 Score=39.94 Aligned_cols=150 Identities=12% Similarity=0.193 Sum_probs=74.2
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCcc
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHA 534 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~ 534 (1042)
..+++.+++++..-....-||-......+.- .....+|.+|.|.|++.+.+++ ..|.|+.=+.....
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~----------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~-- 218 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN----------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG-- 218 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE--
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEc----------cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc--
Confidence 4566677777766656677887654444333 3445799999999998776644 88888777621110
Q ss_pred cccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEE
Q 001628 535 IENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQ 614 (1042)
Q Consensus 535 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~ 614 (1042)
.++ ..+. .......-.+..++|.++....|+|.. |.+. ....+++---+........+.+..+.
T Consensus 219 --~~w---------~~~~---~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 219 --ETW---------SEPI---IPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp --EEE------------B----TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEE
T ss_pred --ccc---------cccc---CCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEE
Confidence 011 1111 000001134889999998887776654 5533 34443332222222222345789999
Q ss_pred EEeeecCCCCceEEEEEeCCceEEEE
Q 001628 615 FETCSLQGFEKNFLVIATKDSSVLVL 640 (1042)
Q Consensus 615 fs~~~~~~~~~~~L~s~s~Dg~V~vw 640 (1042)
|.+ ...-++-+.+|.|.-|
T Consensus 283 f~~-------~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 283 FVN-------PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEE-------TTEEEEE-STTEEEEE
T ss_pred EcC-------CCceEEECCCcEEEEe
Confidence 986 4455555568887765
No 423
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=6.1 Score=50.34 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=30.0
Q ss_pred ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc
Q 001628 119 VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQES 154 (1042)
Q Consensus 119 ~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~ 154 (1042)
+.+.....++|+|.-..++.|+.+|.|++|....-+
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 444566788899999999999999999999876643
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.66 E-value=2.5 Score=43.61 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEec-cc---cc-------ccCCCeEEEEEEeeecCCCCceEEEEE
Q 001628 563 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK-HI---AS-------DISSGIVSLQFETCSLQGFEKNFLVIA 631 (1042)
Q Consensus 563 ~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~-~~---~~-------~~~~~V~sl~fs~~~~~~~~~~~L~s~ 631 (1042)
.++..+. .++.+|.+-+.+|.+++||+.+.+.++.. .+ .. .....|+++..+. +|.-|++-
T Consensus 13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~------~G~PiV~l 84 (219)
T PF07569_consen 13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS------NGVPIVTL 84 (219)
T ss_pred CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC------CCCEEEEE
Confidence 4555555 45889999999999999999998887554 11 11 1234688888886 77777766
Q ss_pred eCCceEEEEECC
Q 001628 632 TKDSSVLVLDSD 643 (1042)
Q Consensus 632 s~Dg~V~vwd~~ 643 (1042)
+ +|..+.|+.+
T Consensus 85 s-ng~~y~y~~~ 95 (219)
T PF07569_consen 85 S-NGDSYSYSPD 95 (219)
T ss_pred e-CCCEEEeccc
Confidence 6 6889999965
No 425
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.41 E-value=0.26 Score=58.18 Aligned_cols=117 Identities=11% Similarity=0.174 Sum_probs=74.2
Q ss_pred eeecccCceEEEEEcCC-CCEEEEEEcCCeEEEEecC---CCeE----EEEecCCCcceEEEEEec---CCCEEEEEeCC
Q 001628 33 FHYGFPSGCNKFAYDPL-QKILAAATKDGRIKLYGRH---NNTQ----ALLESSEAVSTKFLQFLE---NQGILLNVTST 101 (1042)
Q Consensus 33 ~~~G~~~~v~~la~sp~-~~~LA~gs~dg~I~iw~~~---g~~~----~~~~~~~~~~v~~l~fs~---~~~~Lvs~s~d 101 (1042)
...|+++.|-.++|-.. -..++ -.-|...||+++ |+++ .....+-..++.-+.|.| +.-++-.+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 34588999988888432 22222 223778999976 5433 333344444555556655 66566667778
Q ss_pred CCEEEEEcCCCceeeeeecCCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEEcc
Q 001628 102 NLIEVWDIDKKRLSHVHVCKEEITSFT-----------IMQHSNYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 102 g~I~vWd~~~~~~~~~~~h~~~It~v~-----------~sp~~~~l~sg~~dG~I~vwd~~ 151 (1042)
++|++.++++....-+.+|..+++.++ ++|||..++.++.||.++.|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 888888777655433444665555444 57888888888888888888754
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.03 E-value=40 Score=35.91 Aligned_cols=226 Identities=15% Similarity=0.156 Sum_probs=124.0
Q ss_pred CCCCCcCceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC-----CC---eEEEEecC----CCcceEEEEEe
Q 001628 22 LKSSDVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-----NN---TQALLESS----EAVSTKFLQFL 89 (1042)
Q Consensus 22 l~~~~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-----g~---~~~~~~~~----~~~~v~~l~fs 89 (1042)
..+.+.|+..+.-+| ++|+|.+.+-++....+...+|+.+ |. +...+..+ .....+-+.|+
T Consensus 13 ~~A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 13 HAAQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe
Confidence 346788999888887 7899999888887778999999986 32 23333321 23456677777
Q ss_pred cCCC------------EEEEEeCCCCEEEEEcCCCc------eeeee-ecCCCeE-EEEEe--CCCCEEEEEe-CCCcEE
Q 001628 90 ENQG------------ILLNVTSTNLIEVWDIDKKR------LSHVH-VCKEEIT-SFTIM--QHSNYMLLGD-TAGKIS 146 (1042)
Q Consensus 90 ~~~~------------~Lvs~s~dg~I~vWd~~~~~------~~~~~-~h~~~It-~v~~s--p~~~~l~sg~-~dG~I~ 146 (1042)
.... .++-+++||+|.-|+..-.. ...+. ...+.|. .+++- ..+.+|+.+. .+|+|.
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceE
Confidence 5433 35777899999999853322 11221 1123332 34443 4467777765 478999
Q ss_pred EEEccCCcccee--eeeeecccccccCc--cccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccc
Q 001628 147 VLKLDQESSQIV--KMKYIIPLSASHGN--EVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL 222 (1042)
Q Consensus 147 vwd~~~~~~~~~--~~~~~ip~~~~~~~--~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~ 222 (1042)
|+|-.=....+. ...-.+|.....=. .....--|+...-.+ +...=+.+-.-|.|-++|... +.++++..
T Consensus 166 VFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~--~~~d~v~G~G~G~VdvFd~~G-~l~~r~as--- 239 (336)
T TIGR03118 166 VFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA--DRNDEVAGAGLGYVNVFTLNG-QLLRRVAS--- 239 (336)
T ss_pred EecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC--cccccccCCCcceEEEEcCCC-cEEEEecc---
Confidence 997443321000 00001121111000 000111222222333 333344455567888888874 33333210
Q ss_pred ccccccCCceeEEEEE-----ccCCCEEEEEecCCeEEEEeCCCcc
Q 001628 223 QSVYHETKQVTSACWA-----CPIGSKVAVGYSNGEILIWGVPSIL 263 (1042)
Q Consensus 223 ~~~~~~~~~I~~l~~~-----~~~g~~l~sg~~dG~I~iWd~~~~~ 263 (1042)
.+.-..-+.++.. ...|.+|+--..||+|..+|..++.
T Consensus 240 ---~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 240 ---SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ---CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 1112223333332 2357888888889999999998764
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.92 E-value=1.4 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=27.1
Q ss_pred CCeEEEEEecCC---cEEEEEecCCcEEEEeccC
Q 001628 563 GSIISLNMNRNS---QHLAVGSDQGYVYLLDTEG 593 (1042)
Q Consensus 563 ~~V~~l~~spdg---~~La~gs~dg~V~vwD~~~ 593 (1042)
|+|.++.|||.. .+||..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 5999999999999999985
No 428
>PHA02713 hypothetical protein; Provisional
Probab=87.86 E-value=7.2 Score=46.76 Aligned_cols=67 Identities=6% Similarity=-0.009 Sum_probs=40.9
Q ss_pred CCcEEEEEecCC------cEEEEeccC-CeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCc--eEEEEECC
Q 001628 573 NSQHLAVGSDQG------YVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS--SVLVLDSD 643 (1042)
Q Consensus 573 dg~~La~gs~dg------~V~vwD~~~-~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg--~V~vwd~~ 643 (1042)
+++..++|+.++ .|..||..+ .+......+.. .. .-.+++.. ++.+.++|+.|| ++-.||..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r-~~~~~~~~-------~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RL-SALHTILH-------DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-cc-ccceeEEE-------CCEEEEEeeecceeehhhcCcc
Confidence 577777777542 467888887 55543233221 11 12222222 688888999888 78888877
Q ss_pred CCcee
Q 001628 644 NGNML 648 (1042)
Q Consensus 644 tg~~i 648 (1042)
+++--
T Consensus 534 ~~~W~ 538 (557)
T PHA02713 534 TYEWN 538 (557)
T ss_pred ccccc
Confidence 66544
No 429
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=87.86 E-value=0.28 Score=35.36 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhhHHHHHHHHHHHHh
Q 001628 998 SKLHENSKKLQGINLKTTEMQDTARSFSSMAKEVLRIAE 1036 (1042)
Q Consensus 998 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1042)
+|+.+|.+||=.+-+.+.-=.+.|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999988877766667789999999999999873
No 430
>PHA02713 hypothetical protein; Provisional
Probab=87.11 E-value=16 Score=43.77 Aligned_cols=146 Identities=5% Similarity=-0.009 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCC-----CEEEEEcCCCceeeeeecCCCeEEE-EEeCCCCEEEEEeCCC---------------------
Q 001628 91 NQGILLNVTSTN-----LIEVWDIDKKRLSHVHVCKEEITSF-TIMQHSNYMLLGDTAG--------------------- 143 (1042)
Q Consensus 91 ~~~~Lvs~s~dg-----~I~vWd~~~~~~~~~~~h~~~It~v-~~sp~~~~l~sg~~dG--------------------- 143 (1042)
++...+.|+.++ ++..||..+..-..+...+.+.... +..-++...++|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 555667777653 4888998887633332222211111 1123566666776543
Q ss_pred --cEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECC------CeEEEEeccC-CeeE
Q 001628 144 --KISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRD------GLISLWDIRE-SKSI 214 (1042)
Q Consensus 144 --~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~d------g~I~vWd~~~-~~~~ 214 (1042)
.|..||..+.+ ....+ .++.. ... .+++.. ++...++|+.+ ..+..||..+ ++-.
T Consensus 431 ~~~ve~YDP~td~--W~~v~-~m~~~---------r~~-~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 431 SNKVIRYDTVNNI--WETLP-NFWTG---------TIR-PGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred cceEEEECCCCCe--EeecC-CCCcc---------ccc-CcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 36667766654 22111 00000 001 112222 45555556543 2456788887 5533
Q ss_pred EEeCCcccccccccCCceeEEEEEccCCCEEEEEecCC--eEEEEeCCC
Q 001628 215 FSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG--EILIWGVPS 261 (1042)
Q Consensus 215 ~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG--~I~iWd~~~ 261 (1042)
.. .. ....... ..++. -+|...++|+.|| ++-.+|..+
T Consensus 495 ~~--~~----m~~~r~~-~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 495 LI--TT----TESRLSA-LHTIL--HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred Ec--cc----cCccccc-ceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence 22 11 1111112 22223 3789999999888 566666665
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.66 E-value=3.6 Score=42.43 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred EecCCCEEEEEeCCCCEEEEEcCCCcee--e------ee-------ecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001628 88 FLENQGILLNVTSTNLIEVWDIDKKRLS--H------VH-------VCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 88 fs~~~~~Lvs~s~dg~I~vWd~~~~~~~--~------~~-------~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
+..++.+|++...+|.+++||+.+++.. . +. .....|+.+.++.+|.-+++ ..+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 5567789999999999999999987621 1 11 24467899999888866554 4578899998776
Q ss_pred Cc
Q 001628 153 ES 154 (1042)
Q Consensus 153 ~~ 154 (1042)
..
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 54
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.23 E-value=14 Score=44.08 Aligned_cols=117 Identities=10% Similarity=0.129 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCe
Q 001628 123 EITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGL 202 (1042)
Q Consensus 123 ~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~ 202 (1042)
..+-+.-+.-++..++-.....+.|||...... .|.. .....+.|.++.|...++++.+++.+-.+.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l-----E~~~--------~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL-----EYEE--------SFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEE-----EEee--------eecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 444455555445545544455899999988752 2221 123357899999988779999999999998
Q ss_pred EEEEeccC-----Ce----eEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 203 ISLWDIRE-----SK----SIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 203 I~vWd~~~-----~~----~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
|.++.-.. .. .+.. +........+|...+|. ++|..++..+. .+.|++-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~-----i~i~~~T~h~Igds~Wl-~~G~LvV~sGN--qlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRK-----IDISSHTPHPIGDSIWL-KDGTLVVGSGN--QLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEE-----EEeecCCCCCccceeEe-cCCeEEEEeCC--EEEEECCC
Confidence 88885421 11 1111 11111223678999998 78877665543 58888754
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=10 Score=41.95 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=83.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEecCC---CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc--ee-
Q 001628 42 NKFAYDPLQKILAAATKDGRIKLYGRHN---NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--LS- 115 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~dg~I~iw~~~g---~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--~~- 115 (1042)
+.+=||...++|.. .+.|.+.=|-..| .+...+.....++|.++.|++|.+.|+.--.+++|.+.+....+ +.
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34556655555444 4445566665542 34445555566799999999999999999999999999984433 21
Q ss_pred --eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCe
Q 001628 116 --HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKR 193 (1042)
Q Consensus 116 --~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ 193 (1042)
..+.-...|..+.|+.... +|.-...| +-+|.+......+.. -..+...|.-..|.| +.+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrslRl-------------Vks~~~nvnWy~yc~--et~v 167 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSLRL-------------VKSHNLNVNWYMYCP--ETAV 167 (657)
T ss_pred HHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhhhh-------------hhhcccCccEEEEcc--ccce
Confidence 2222335689999987744 44444444 555555443211111 112345677777887 5554
Q ss_pred EEEE
Q 001628 194 ILII 197 (1042)
Q Consensus 194 lls~ 197 (1042)
++.+
T Consensus 168 ~LL~ 171 (657)
T KOG2377|consen 168 ILLS 171 (657)
T ss_pred Eeee
Confidence 4433
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.38 E-value=1.1e+02 Score=38.36 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=94.8
Q ss_pred cccCC-CCCCCeEEEEEe---C----CCCEEEEEeccceEEEEEeccCCcc---c-c-cceeeecccccCccceeeeEEE
Q 001628 492 EKDFS-LSGIPLTALYYD---G----TSRVLVSGDQSGMVRIFKLKYEPHA---I-E-NSFLSFTGSKKGNSHIIHSVKV 558 (1042)
Q Consensus 492 ~~~~~-~~~~~V~~l~fs---p----~~~~Lasg~~dG~V~vw~~~~~~~~---~-~-~~~~~~~~~~~g~~~~~~~~~~ 558 (1042)
+..|. ..+.+|..|.|+ . ..++|++=... .+.|+...-.... . . ..+. .....+...-
T Consensus 71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~-st~I~~p~~~~~~~~~~~~~s~i~--------~~~l~~i~~~ 141 (765)
T PF10214_consen 71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTET-STTILRPEYHRVISSIRSRPSRID--------PNPLLTISSS 141 (765)
T ss_pred cceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCC-EEEEEEcccccccccccCCccccc--------cceeEEechh
Confidence 34455 567899999998 2 23577765554 4566663222110 0 0 0000 0000000000
Q ss_pred eecCCCeEEEEEecC-CcEEEEEecCCcEEEEeccC------CeEEEe----ccc-cc-ccCCCeEEEEEEeeecCCCCc
Q 001628 559 MKINGSIISLNMNRN-SQHLAVGSDQGYVYLLDTEG------PTVLYQ----KHI-AS-DISSGIVSLQFETCSLQGFEK 625 (1042)
Q Consensus 559 ~~~~~~V~~l~~spd-g~~La~gs~dg~V~vwD~~~------~~~~~~----~~~-~~-~~~~~V~sl~fs~~~~~~~~~ 625 (1042)
.....+...++|+|. .+.||+-+..|...|||+.. ..+... +++ .+ ...+.-..+.|.+ +-
T Consensus 142 ~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~------~~ 215 (765)
T PF10214_consen 142 DTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS------DS 215 (765)
T ss_pred hcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC------CC
Confidence 112357789999994 56899999999999999921 111111 111 00 0112344677765 55
Q ss_pred eEEEEEeCCceEEEEECCCCceeeeeecCCCCCCCceEEEEecCCCcCccCccccccccCCCCCCCCCCCCCCcEEEEEe
Q 001628 626 NFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS 705 (1042)
Q Consensus 626 ~~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ll~~~ 705 (1042)
..|++.+ ...+.++|..++..... -+.......++-+...+. ...++++.+
T Consensus 216 ~~lLv~~-r~~l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~---------------------------~~~~~FiLT 266 (765)
T PF10214_consen 216 NRLLVCN-RSKLMLIDFESNWQTEY-LVTAKTWSWILDVKRSPD---------------------------NPSHVFILT 266 (765)
T ss_pred CEEEEEc-CCceEEEECCCCCccch-hccCCChhheeeEEecCC---------------------------ccceEEEEe
Confidence 6666655 45678888776554332 122333333444433321 124566667
Q ss_pred cCceEEEecCc
Q 001628 706 EKAACAYSLSH 716 (1042)
Q Consensus 706 ~~~i~i~~~~~ 716 (1042)
...|-.+++..
T Consensus 267 s~eiiw~~~~~ 277 (765)
T PF10214_consen 267 SKEIIWLDVKS 277 (765)
T ss_pred cCeEEEEEccC
Confidence 77887777765
No 435
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.36 E-value=91 Score=38.94 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCeEEEEEeC-----C--CCEEEEEec----cceEEEEEeccCCcccccceeeecccccCcc-ceeeeEEE-----eecC
Q 001628 500 IPLTALYYDG-----T--SRVLVSGDQ----SGMVRIFKLKYEPHAIENSFLSFTGSKKGNS-HIIHSVKV-----MKIN 562 (1042)
Q Consensus 500 ~~V~~l~fsp-----~--~~~Lasg~~----dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~-----~~~~ 562 (1042)
..++.+.|-+ + ...|++.+. ...|.-|.+..........|.++. .+++.. ...+...+ ...+
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~-s~~~~~~~~~~~~~l~~~~~i~~~ 259 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLG-SKKNSSSEPPPTYRLRRLDDITLN 259 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcC-CCCcCCCCCCCceeEEEecccccC
Confidence 4677777765 1 134444432 346888998765432211222111 111111 00011111 1344
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEec----cccc---------c---cCCCeEEEEEEeeecCCCCce
Q 001628 563 GSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQK----HIAS---------D---ISSGIVSLQFETCSLQGFEKN 626 (1042)
Q Consensus 563 ~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~----~~~~---------~---~~~~V~sl~fs~~~~~~~~~~ 626 (1042)
..|.+++....+.+++....||+|.++|..+-+.+... .... . .-.++..++||| .+.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP------t~c 333 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP------TMC 333 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc------ccc
Confidence 78999998888899999999999999999876655222 1100 0 011345677888 777
Q ss_pred EEEEEeCCceEE
Q 001628 627 FLVIATKDSSVL 638 (1042)
Q Consensus 627 ~L~s~s~Dg~V~ 638 (1042)
.++.-..||.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 777777777755
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.87 E-value=85 Score=36.59 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=71.6
Q ss_pred CCeEEEEEeCC----C-CEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCC--eEEEEEec
Q 001628 500 IPLTALYYDGT----S-RVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGS--IISLNMNR 572 (1042)
Q Consensus 500 ~~V~~l~fsp~----~-~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--V~~l~~sp 572 (1042)
..|..++|.|- . .+||+ -....|.||.+....... .++. +.+..-...+-+ -..+.|+|
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~-~K~l------------~sQtcEi~e~~pvLpQGCVWHP 122 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTER-NKLL------------MSQTCEIREPFPVLPQGCVWHP 122 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCcccc-ccce------------eeeeeeccCCcccCCCcccccC
Confidence 46888999885 3 45554 456789999997544433 1111 001111111111 23567999
Q ss_pred CCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCCCceEEEEEeCC-ceEEEEEC
Q 001628 573 NSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKD-SSVLVLDS 642 (1042)
Q Consensus 573 dg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~D-g~V~vwd~ 642 (1042)
....|++=.....-.+++++...-..+..+. ..+.|.|.+|.. ||+.|+++-.. =+-++||-
T Consensus 123 k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~------DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 123 KKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK------DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecC------cCCEEEEEeCCeEEEEEecC
Confidence 9888888766555455666432222222222 355899999998 88877766543 46789983
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.22 E-value=5 Score=39.71 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=31.7
Q ss_pred CeEEEEEEeeecCCCCceEEEEEeCCceEEEEECC
Q 001628 609 GIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSD 643 (1042)
Q Consensus 609 ~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~ 643 (1042)
.|.+++|||.+...+.+.+|++.+.+|.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999988777788999999999999999865
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.81 E-value=72 Score=34.13 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=95.3
Q ss_pred EEEEEeCCCcEEEEeCCCCce---eeeeeccccccccCCCCCCCeEEEEEeCC--CCEEE-EEeccceEEEEEeccCCcc
Q 001628 461 LFITGHSDGAINFWDVSCPLF---LLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLV-SGDQSGMVRIFKLKYEPHA 534 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~~~~~---~~l~~l~~~~~~~~~~~~~~V~~l~fsp~--~~~La-sg~~dG~V~vw~~~~~~~~ 534 (1042)
.++.+++||+|.=|.-.-... .....+. + ......-.-+++... +.+|. +--..|+|.|||-.-.+..
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d----~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVD----A--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEc----c--CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 578899999999999643322 1111111 1 111222344555543 34444 4446789999976544332
Q ss_pred cccceeeeccc--ccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEE
Q 001628 535 IENSFLSFTGS--KKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVS 612 (1042)
Q Consensus 535 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~s 612 (1042)
....| +|. -.+..++ -+......--|+-..-.++.+.=+.|-.-|.|-++|..+.-+..-.+ .+.-...+.
T Consensus 176 ~~g~F---~DP~iPagyAPF--nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as--~g~LNaPWG 248 (336)
T TIGR03118 176 LPGSF---IDPALPAGYAPF--NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS--SGRLNAPWG 248 (336)
T ss_pred CCCCc---cCCCCCCCCCCc--ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc--CCcccCCce
Confidence 21122 110 0111111 01111111112222223334444455666899999998876641111 112235677
Q ss_pred EEEEeeecCCCCceEEEEEeCCceEEEEECCCCceeeee
Q 001628 613 LQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 613 l~fs~~~~~~~~~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
|+..|..--.+.+.+|+---.||+|.+||..+|+.+...
T Consensus 249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 777664333457888888888999999999999988655
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.74 E-value=30 Score=40.66 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc---ee
Q 001628 39 SGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR---LS 115 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~---~~ 115 (1042)
..++++.-+|-++-++.|..||.|++|+.-.+.+..+ .....|-..+.|...| |+++..|..+.-|.-+.-. .-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski-~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI-CEEAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh-hhhcCCccceeeeccc--eEEEeccchhheeeccCcchhhcc
Confidence 4578888899999999999999999998652222111 1112334447788888 8888899999889755422 11
Q ss_pred eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001628 116 HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLK 149 (1042)
Q Consensus 116 ~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd 149 (1042)
.-...+....++...|..+- ++|+--|-|.-+|
T Consensus 92 yndqsekefss~~cdptaqn-vvgtlcggv~q~d 124 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQN-VVGTLCGGVEQFD 124 (1636)
T ss_pred ccchhhhhccceecCchhhh-hhhhhccceeeeh
Confidence 22223345556666666544 4566666666665
No 440
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.65 E-value=97 Score=35.56 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=38.8
Q ss_pred EEEEEEccCCCCCeEEEEE-CCC----eEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecC
Q 001628 180 VINILPQPTAESKRILIIF-RDG----LISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 180 V~~v~~~p~~d~~~lls~~-~dg----~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~d 251 (1042)
+....++| ++++++.+- ..| .++++|+.+++.+... ........++|. +++..|+....+
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------i~~~~~~~~~W~-~d~~~~~y~~~~ 190 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------IENPKFSSVSWS-DDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------EEEEESEEEEEC-TTSSEEEEEECS
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------ccccccceEEEe-CCCCEEEEEEeC
Confidence 34678899 899888764 334 5999999998755421 111222348897 787776655433
No 441
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.59 E-value=84 Score=34.76 Aligned_cols=113 Identities=9% Similarity=0.183 Sum_probs=67.5
Q ss_pred cceEEEEEecCCCEEEEEeCCCC------EEEEEcCCC-----cee-----eeeecCC--------CeEEEEEeCCCCEE
Q 001628 81 VSTKFLQFLENQGILLNVTSTNL------IEVWDIDKK-----RLS-----HVHVCKE--------EITSFTIMQHSNYM 136 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~------I~vWd~~~~-----~~~-----~~~~h~~--------~It~v~~sp~~~~l 136 (1042)
..+..|.+.+++..+++.++++. +...++... .+. .+..-.+ -.-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888877778888888888 666665541 111 1111112 23478887777776
Q ss_pred EEEeCC------CcEEEEEccCCccceeeeeeecccccccC----ccccCCCCEEEEEEccCCCCCeEEEEEC
Q 001628 137 LLGDTA------GKISVLKLDQESSQIVKMKYIIPLSASHG----NEVSGDPAVINILPQPTAESKRILIIFR 199 (1042)
Q Consensus 137 ~sg~~d------G~I~vwd~~~~~~~~~~~~~~ip~~~~~~----~~~~~~~~V~~v~~~p~~d~~~lls~~~ 199 (1042)
++.-.+ ..|+.++.+... ...+.+|...... ..........+++++| ++..|+++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~----~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRV----IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcc----cceEccccccccccCccccccCCCCeEEEEECC--CCCEEEEEEC
Confidence 666556 678777766322 1122334332111 1233457899999999 8987877764
No 442
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.93 E-value=52 Score=39.55 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred CCccEEEEEeCC-C-----cEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccce-----EEE
Q 001628 457 KVKNLFITGHSD-G-----AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGM-----VRI 525 (1042)
Q Consensus 457 ~~~~~l~tg~~D-g-----~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~-----V~v 525 (1042)
-++.++++|+.| | ++..||........+..+.. ..+...+. .-++.+.|+|+.||. |..
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~------~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT------KRSDFGVA----VLDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC------ccccceeE----EECCEEEEEeccccccccccEEE
Confidence 345689999999 3 46778877776655443311 11112222 226778889999875 445
Q ss_pred EEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCC------cEEEEeccCCeEEEe
Q 001628 526 FKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQG------YVYLLDTEGPTVLYQ 599 (1042)
Q Consensus 526 w~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg------~V~vwD~~~~~~~~~ 599 (1042)
||...+........ .... ...... .-+|.+.++|+.++ +|..||..+......
T Consensus 401 YDp~~~~W~~va~m---------~~~r----------~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPM---------LTRR----------SGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred ecCCCCcccccCCC---------Ccce----------eeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 55544433220000 0000 111111 22588889988665 467788877776533
Q ss_pred cccccccCCCeEEEEEEeeecCCCCceEEEEEeCCc-----eEEEEECCCCceeee
Q 001628 600 KHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-----SVLVLDSDNGNMLST 650 (1042)
Q Consensus 600 ~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg-----~V~vwd~~tg~~i~~ 650 (1042)
..+... . .-..++.- ++.+.+.|+.|+ +|..+|..+.+....
T Consensus 460 ~~M~~~-R-~~~g~a~~-------~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 460 APMNTR-R-SGFGVAVL-------NGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CCcccc-c-ccceEEEE-------CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 333210 1 11123333 678888888776 367777776554433
No 443
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.98 E-value=37 Score=40.78 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCccEEEEEeCCCc-----EEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEE-eCCCCEEEEEeccce------E
Q 001628 456 SKVKNLFITGHSDGA-----INFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYY-DGTSRVLVSGDQSGM------V 523 (1042)
Q Consensus 456 ~~~~~~l~tg~~Dg~-----IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~f-sp~~~~Lasg~~dG~------V 523 (1042)
.-++.+++.|+.||. |-.||..+.....+..+ ..+....+. .-++.+.++|+.+|. |
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m-----------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM-----------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCCC-----------CcceeeeEEEEECCEEEEEcCcCCCccccceE
Confidence 346678999999975 66777776655433322 112222222 235677788886654 5
Q ss_pred EEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCc-----EEEEeccCCeEEE
Q 001628 524 RIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY-----VYLLDTEGPTVLY 598 (1042)
Q Consensus 524 ~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~-----V~vwD~~~~~~~~ 598 (1042)
..||..++.......+ .... .... ++ .-++.+.++|+.||. |..+|..+.+...
T Consensus 447 e~YDP~t~~W~~~~~M---------~~~R----------~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPM---------NTRR----------SGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEcCCCCceeecCCc---------cccc----------ccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 5666555443221111 1110 1111 22 225888999998873 7778888877763
Q ss_pred ecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCc-----eEEEEECCCCcee
Q 001628 599 QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDS-----SVLVLDSDNGNML 648 (1042)
Q Consensus 599 ~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg-----~V~vwd~~tg~~i 648 (1042)
...+.. +...+.... .++.+.++|+.|| +|..||..+++-.
T Consensus 506 v~~m~~----~rs~~g~~~-----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 506 VAPMTS----PRSAVGVVV-----LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccCcc----ccccccEEE-----ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 332221 222222221 1567777777775 5777777665443
No 444
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.93 E-value=1.7e+02 Score=36.64 Aligned_cols=118 Identities=13% Similarity=0.213 Sum_probs=78.7
Q ss_pred eecccCceEEEEEcCCCCEEEEEEcCCeEEEEecC--CCeEEEE-ecCCCcceEEEEEecCC------CEEEEEeCCCCE
Q 001628 34 HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH--NNTQALL-ESSEAVSTKFLQFLENQ------GILLNVTSTNLI 104 (1042)
Q Consensus 34 ~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~--g~~~~~~-~~~~~~~v~~l~fs~~~------~~Lvs~s~dg~I 104 (1042)
.+-.|..++.+.---.++.++++.++|.+.-+..+ |+..... +..-...|.++++.++. ++++.++.|+++
T Consensus 533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 55567777666666667788899998988777654 3322222 23334567778888764 579999999999
Q ss_pred EEEEcCCCc---eeeeeecCCCeEEEEEeC---CC------CEEEEEeCCCcEEEEEcc
Q 001628 105 EVWDIDKKR---LSHVHVCKEEITSFTIMQ---HS------NYMLLGDTAGKISVLKLD 151 (1042)
Q Consensus 105 ~vWd~~~~~---~~~~~~h~~~It~v~~sp---~~------~~l~sg~~dG~I~vwd~~ 151 (1042)
++..+.... .....+.+.++.++.+-+ .+ -+|.+|-.+|.+.-.-++
T Consensus 613 riisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id 671 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVID 671 (1205)
T ss_pred eEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEec
Confidence 999988554 334455556666655532 22 367789999987766443
No 445
>PHA03098 kelch-like protein; Provisional
Probab=79.72 E-value=65 Score=38.57 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=34.3
Q ss_pred CCCEEEEEeCC-----CCEEEEEcCCCceeeeeecCCCe--EEEEEeCCCCEEEEEeCC------CcEEEEEccCCc
Q 001628 91 NQGILLNVTST-----NLIEVWDIDKKRLSHVHVCKEEI--TSFTIMQHSNYMLLGDTA------GKISVLKLDQES 154 (1042)
Q Consensus 91 ~~~~Lvs~s~d-----g~I~vWd~~~~~~~~~~~h~~~I--t~v~~sp~~~~l~sg~~d------G~I~vwd~~~~~ 154 (1042)
++...+.|+.+ +.+..||..+++-......+.+- .++ ..-++...+.|+.+ ..+..||..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 55566777654 35788888877633322211111 122 22345555666632 357888887765
No 446
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.68 E-value=40 Score=37.99 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCC--CCEEEEE-eccceEEEEEe-ccCCcccccceeeec
Q 001628 468 DGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGT--SRVLVSG-DQSGMVRIFKL-KYEPHAIENSFLSFT 543 (1042)
Q Consensus 468 Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~--~~~Lasg-~~dG~V~vw~~-~~~~~~~~~~~~~~~ 543 (1042)
-.++.+||+....+.....|. ..+.....|.|..+ ..+=.+| .-.+.|..|-- .......+ ....+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg--------~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~-kVi~ip 291 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLG--------EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE-KVIDIP 291 (461)
T ss_dssp --EEEEEETTTTEEEEEEES---------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE-EEEEE-
T ss_pred cCeEEEEECCCCcEeeEEecC--------CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee-EEEECC
Confidence 457999999998777666552 22234556666544 4333333 23444433333 33222210 111000
Q ss_pred ccccCccceeeeE--EEeecCCCeEEEEEecCCcEEEEE-ecCCcEEEEeccC
Q 001628 544 GSKKGNSHIIHSV--KVMKINGSIISLNMNRNSQHLAVG-SDQGYVYLLDTEG 593 (1042)
Q Consensus 544 ~~~~g~~~~~~~~--~~~~~~~~V~~l~~spdg~~La~g-s~dg~V~vwD~~~ 593 (1042)
.-+. ..-.+|.. -+...+.-|+.+..|.|.++|.+. -.+|.|+.||+..
T Consensus 292 ~~~v-~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 292 AKKV-EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EE---SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred Cccc-CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0000 00000000 001113668999999999987665 4689999999965
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.96 E-value=80 Score=35.63 Aligned_cols=107 Identities=6% Similarity=-0.063 Sum_probs=53.4
Q ss_pred eEEEEEecCCCEEEEEe-----------CCC-CEEEEEcCC--Cc---eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcE
Q 001628 83 TKFLQFLENQGILLNVT-----------STN-LIEVWDIDK--KR---LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKI 145 (1042)
Q Consensus 83 v~~l~fs~~~~~Lvs~s-----------~dg-~I~vWd~~~--~~---~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I 145 (1042)
...|+|.++|+.+|+-. ..+ .|.+++-.. ++ ...+..--...+.+++.+++ |++++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 34589999987666642 123 677776433 22 12222223456889998988 5565555433
Q ss_pred EEEEccCCcc---ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEE
Q 001628 146 SVLKLDQESS---QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIF 198 (1042)
Q Consensus 146 ~vwd~~~~~~---~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~ 198 (1042)
++.+.+.... ....+...++... ..+......+.|.| |+...++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~~~~~~~~l~~gp--DG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQI-----NNHHHSLNSLAWGP--DGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCC-----CcccccccCceECC--CCCEEEecc
Confidence 3334433210 0111111111110 01134567789999 776555444
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=78.72 E-value=49 Score=38.91 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=72.6
Q ss_pred CCccEEEEEeCCC--cEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccc---eEEEEEeccC
Q 001628 457 KVKNLFITGHSDG--AINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSG---MVRIFKLKYE 531 (1042)
Q Consensus 457 ~~~~~l~tg~~Dg--~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG---~V~vw~~~~~ 531 (1042)
-++.+++.|+.++ ++..||........+..+ ....... ....-++++.++|+.++ .+..|+...+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l--------~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL--------LKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCC--------CCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 3556788887643 577888766555433322 1111111 12233677778887654 3556665543
Q ss_pred CcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeE
Q 001628 532 PHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIV 611 (1042)
Q Consensus 532 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~ 611 (1042)
.......+ ..+. ... +++ .-+++..++| |.+.+||.++.+......+.. .....
T Consensus 387 ~W~~~~~m---------~~~r----------~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~-~r~~~- 440 (480)
T PHA02790 387 QWQFGPST---------YYPH----------YKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIY-PRDNP- 440 (480)
T ss_pred EEEeCCCC---------CCcc----------ccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCC-Ccccc-
Confidence 32110000 0010 111 122 3357777777 457889988777653333221 11112
Q ss_pred EEEEEeeecCCCCceEEEEEeCC-----ceEEEEECCCC
Q 001628 612 SLQFETCSLQGFEKNFLVIATKD-----SSVLVLDSDNG 645 (1042)
Q Consensus 612 sl~fs~~~~~~~~~~~L~s~s~D-----g~V~vwd~~tg 645 (1042)
+++.- ++.+.++|+.+ .+|.+||..++
T Consensus 441 ~~~v~-------~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 441 ELIIV-------DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEEE-------CCEEEEECCcCCCcccceEEEEECCCC
Confidence 22222 57777777754 35667776644
No 449
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=78.64 E-value=49 Score=41.66 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=88.3
Q ss_pred CEEEEEEcC---------CeEEEEecC------C------CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEc
Q 001628 51 KILAAATKD---------GRIKLYGRH------N------NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDI 109 (1042)
Q Consensus 51 ~~LA~gs~d---------g~I~iw~~~------g------~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~ 109 (1042)
.+||+|+.- |+++||+.- | ++..++..+.+.+|..++=. +| +|+++ ..-.|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEc-cCcEEEEEEe
Confidence 589999743 999999853 2 23445556667788755533 34 56665 3467999999
Q ss_pred CC-CceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 110 DK-KRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 110 ~~-~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
+. ..+.-..-..-++.-....--.++|+.|+--..|.+..++.....+..... ....-.|.++.|.-.
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr-----------d~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR-----------DFEPLNVYSTEFLVD 1192 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec-----------CCchhhceeeeeEEc
Confidence 44 333322222333333334445688888888888888877765422222211 112346777777762
Q ss_pred CCCCeEEEEECCCeEEEEeccC
Q 001628 189 AESKRILIIFRDGLISLWDIRE 210 (1042)
Q Consensus 189 ~d~~~lls~~~dg~I~vWd~~~ 210 (1042)
...-.++++..++.|.++-...
T Consensus 1193 g~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred CCeeEEEEEcCCCcEEEEEeCC
Confidence 1234578888999998886654
No 450
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=78.17 E-value=1.5e+02 Score=35.06 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEecCCC-------eEEEEec--CCCcceEEEEEec-----CCCEEEEEe--CCCC-
Q 001628 41 CNKFAYDPLQKILAAATKDGRIKLYGRHNN-------TQALLES--SEAVSTKFLQFLE-----NQGILLNVT--STNL- 103 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~dg~I~iw~~~g~-------~~~~~~~--~~~~~v~~l~fs~-----~~~~Lvs~s--~dg~- 103 (1042)
-.-++.||.+|.+|++..+|.+.||-.+ . ....+.. .....|.+++|.. +...++..- ..+.
T Consensus 46 G~~l~vDP~~R~i~v~a~e~~~~v~~l~-~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~ 124 (504)
T PF10433_consen 46 GQYLAVDPSGRCIAVSAYEGNFLVYPLN-RSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRT 124 (504)
T ss_dssp --EEEE-TTSSEEEEEEBTTEEEEEE-S-S----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EE
T ss_pred CcEEEECCcCCEEEEEecCCeEEEEEec-ccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccc
Confidence 4569999999999999999999998776 3 1111111 2256778899986 233444432 2222
Q ss_pred -EEE--EEcCCCcee-------e--e-eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-cCC--ccceeeeeeecccc
Q 001628 104 -IEV--WDIDKKRLS-------H--V-HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKL-DQE--SSQIVKMKYIIPLS 167 (1042)
Q Consensus 104 -I~v--Wd~~~~~~~-------~--~-~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~-~~~--~~~~~~~~~~ip~~ 167 (1042)
+.. |+...+... . + ..++.+..-+.+......+++++.+ +.+|.- ... ....... ..|..
T Consensus 125 ~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~--~i~y~~~~~~~~~~~~~~~--~~~~~ 200 (504)
T PF10433_consen 125 HLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGEN--IIIYKNHLIGSGDYSFLSI--PSPPS 200 (504)
T ss_dssp EEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESS--EEEEEE------TTEEEEE----H-H
T ss_pred eeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCE--EEEEecccccccccccccc--cCCcc
Confidence 333 444433211 1 1 1122232223332223444444433 333332 111 1101111 11100
Q ss_pred cccCccccCCCCEEEEE-------EccCCCCCeEEEEECCCeEEEEeccCCee-EEEeCCccccccccc-CCceeEEEEE
Q 001628 168 ASHGNEVSGDPAVINIL-------PQPTAESKRILIIFRDGLISLWDIRESKS-IFSMGGNVLQSVYHE-TKQVTSACWA 238 (1042)
Q Consensus 168 ~~~~~~~~~~~~V~~v~-------~~p~~d~~~lls~~~dg~I~vWd~~~~~~-~~~~~g~~~~~~~~~-~~~I~~l~~~ 238 (1042)
. ...-+++.. ... ++.+++.+.++|.+....+..... +.. ...+. .....++++.
T Consensus 201 ~-------~~~~~~~~~~p~~~~~~~~--~~~~~lL~~e~G~l~~l~l~~~~~~i~i-------~~~g~~~~~~s~l~~l 264 (504)
T PF10433_consen 201 S-------SSSLWTSWARPERNISYDK--DGDRILLQDEDGDLYLLTLDNDGGSISI-------TYLGTLCSIASSLTYL 264 (504)
T ss_dssp H-------HTS-EEEEEE------SST--TSSEEEEEETTSEEEEEEEEEEEEEEEE-------EEEEE--S-ESEEEEE
T ss_pred C-------CCceEEEEEeccccceecC--CCCEEEEEeCCCeEEEEEEEECCCeEEE-------EEcCCcCChhheEEEE
Confidence 0 011223332 223 788999999999998877765331 110 01122 4556677776
Q ss_pred ccCC-CEEEEEecCCeEEEEeCC
Q 001628 239 CPIG-SKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 239 ~~~g-~~l~sg~~dG~I~iWd~~ 260 (1042)
.+| .+|+.|+.-|.=.++.+.
T Consensus 265 -~~g~d~lf~gs~~gds~l~~~~ 286 (504)
T PF10433_consen 265 -KNGGDYLFVGSEFGDSQLLQIS 286 (504)
T ss_dssp -STT--EEEEEESSS-EEEEEEE
T ss_pred -cCCCEEEEEEEecCCcEEEEEe
Confidence 333 477788776655554443
No 451
>PRK10115 protease 2; Provisional
Probab=77.58 E-value=1.9e+02 Score=35.79 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=71.7
Q ss_pred CcCceeeeeecccCceEEEEEcCCCCEEEEEEcC-----CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeC
Q 001628 26 DVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKD-----GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTS 100 (1042)
Q Consensus 26 ~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~d-----g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~ 100 (1042)
.||+.....-+-.-.+..+.++|++++||.+... .+|++.+..++. .+...-.... ..++|.+|++.|+-...
T Consensus 114 llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~~i~~~~-~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 114 LLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-WYPELLDNVE-PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-CCCccccCcc-eEEEEeeCCCEEEEEEe
Confidence 4666655332223567788999999999998554 457777775221 1111111112 34899998876655543
Q ss_pred C------CCEEEEEcCCCc---eeeeeecCCCeE-EEEEeCCCCEEEEEeC---CCcEEEEEcc
Q 001628 101 T------NLIEVWDIDKKR---LSHVHVCKEEIT-SFTIMQHSNYMLLGDT---AGKISVLKLD 151 (1042)
Q Consensus 101 d------g~I~vWd~~~~~---~~~~~~h~~~It-~v~~sp~~~~l~sg~~---dG~I~vwd~~ 151 (1042)
+ ..|+.|++.++. ...+........ .+..+.+++++++.+. ++.+.+|+.+
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 2 358888888873 222222233333 3334448888776554 4578888854
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=77.55 E-value=6.7 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=26.0
Q ss_pred CceEEEEEcCCC---CEEEEEEcCCeEEEEecC
Q 001628 39 SGCNKFAYDPLQ---KILAAATKDGRIKLYGRH 68 (1042)
Q Consensus 39 ~~v~~la~sp~~---~~LA~gs~dg~I~iw~~~ 68 (1042)
+.+.++.|+|.. .+||.+...|.|.|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 468899999855 499999999999999987
No 453
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.01 E-value=82 Score=33.81 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=60.6
Q ss_pred cceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEe------cCCcEEEEeccC
Q 001628 520 SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGS------DQGYVYLLDTEG 593 (1042)
Q Consensus 520 dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs------~dg~V~vwD~~~ 593 (1042)
+..|++|+....+... + ... ..+.|++|.|..+.++++.|. ....+..||..+
T Consensus 15 C~~lC~yd~~~~qW~~---~---------g~~---------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSS---P---------GNG---------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCEEEEEECCCCEeec---C---------CCC---------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 5568899987655422 1 111 148899999997777777775 466789999998
Q ss_pred CeEE-EecccccccCCCeEEEEEEeeecCCCCc-eEEEEEe-C--CceEEEEECC
Q 001628 594 PTVL-YQKHIASDISSGIVSLQFETCSLQGFEK-NFLVIAT-K--DSSVLVLDSD 643 (1042)
Q Consensus 594 ~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~-~~L~s~s-~--Dg~V~vwd~~ 643 (1042)
.... +.........++|+.+.+... |. ++.+.|. . +..|..||..
T Consensus 74 ~~w~~~~~~~s~~ipgpv~a~~~~~~-----d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 74 QTWSSLGGGSSNSIPGPVTALTFISN-----DGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred CeeeecCCcccccCCCcEEEEEeecc-----CCceEEEeceecCCCceEEEEcCC
Confidence 8774 333111123468988888631 33 3343333 2 3457777744
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.79 E-value=45 Score=37.97 Aligned_cols=94 Identities=12% Similarity=0.187 Sum_probs=56.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEc---------cCCccceeeeeeecccccccCccccCCCCEEEEEEccCC-CCC
Q 001628 123 EITSFTIMQHSNYMLLGDTAGKISVLKL---------DQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA-ESK 192 (1042)
Q Consensus 123 ~It~v~~sp~~~~l~sg~~dG~I~vwd~---------~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~-d~~ 192 (1042)
.|.-+..++.|..++..+.+|.+..+=. +.++-.... .+++.....- .....-.+..++|||.. -..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~C--Rt~~i~~~~f-tss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNC--RTTPVAERFF-TSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEE--Eeecccceee-ccCCceeeeeccccCCccCCc
Confidence 4566778899999999999997665531 111100000 1111100000 11223467789999942 036
Q ss_pred eEEEEECCCeEEEEeccCCeeEEEeCC
Q 001628 193 RILIIFRDGLISLWDIRESKSIFSMGG 219 (1042)
Q Consensus 193 ~lls~~~dg~I~vWd~~~~~~~~~~~g 219 (1042)
+|++-.+|++|++||+...+-++.-+|
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCC
Confidence 799999999999999998776654433
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.56 E-value=1.6e+02 Score=36.90 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=44.8
Q ss_pred CCCCccEEEEEeCCCcEEEEeCCCCceeeeeec--c-ccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccC
Q 001628 455 HSKVKNLFITGHSDGAINFWDVSCPLFLLILSL--K-QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYE 531 (1042)
Q Consensus 455 ~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l--~-~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~ 531 (1042)
+...++.+..|+.||.+.+|.+.......-... . ...+. ..+..+|+.|..++.-..+.+ ..|+.+.++++...
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~--~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEK--EFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhh--hhccchhHHHhhcchhcchhe-ecCCcceeeecCcc
Confidence 445567889999999999999875422111000 0 00011 123577888888776655553 44566777777654
Q ss_pred Cc
Q 001628 532 PH 533 (1042)
Q Consensus 532 ~~ 533 (1042)
..
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 33
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=24 Score=39.32 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=66.5
Q ss_pred EEEEEeCCCCEEEEEeccceEEEEEeccCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEec
Q 001628 503 TALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSD 582 (1042)
Q Consensus 503 ~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~ 582 (1042)
+.+-|+..++.|+ +...|.+.=|-..+... .+|...-....|+|.++.||+|.+.||+--.
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpnd------------------DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~ 86 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPND------------------DVPISFDMDDKGEIKSIKFSLDNKILAVQRT 86 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCC------------------CCCceeeecCCCceeEEEeccCcceEEEEec
Confidence 4444554444444 44555566666654322 1222223334589999999999999999999
Q ss_pred CCcEEEEeccCCeEE--EecccccccCCCeEEEEEEeeecCCCCceEEEEEeCCceEEEE
Q 001628 583 QGYVYLLDTEGPTVL--YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVL 640 (1042)
Q Consensus 583 dg~V~vwD~~~~~~~--~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~s~s~Dg~V~vw 640 (1042)
+.+|.+++..+.... +...+. .....|....|+ +..-++.-++.| +-+|
T Consensus 87 ~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~-------~s~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 87 SKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWT-------SSTEIAFITDQG-IEFY 137 (657)
T ss_pred CceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEe-------cCeeEEEEecCC-eEEE
Confidence 999999998543322 211111 123368999999 456666665444 3444
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.28 E-value=88 Score=33.58 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCeEE-EEecCCCcceEEEEEecCCCEEEEEe------CCCCEEEEEcCCCceeeeee-----cCCCeEE
Q 001628 59 DGRIKLYGRHNNTQA-LLESSEAVSTKFLQFLENQGILLNVT------STNLIEVWDIDKKRLSHVHV-----CKEEITS 126 (1042)
Q Consensus 59 dg~I~iw~~~g~~~~-~~~~~~~~~v~~l~fs~~~~~Lvs~s------~dg~I~vWd~~~~~~~~~~~-----h~~~It~ 126 (1042)
...|++||.. ..+. .+...-...|+.|.|..+.+.+|.|. ....+-.||+.+.....+.. .+++|+.
T Consensus 15 C~~lC~yd~~-~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTD-NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECC-CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 3569999987 3333 22233456899999997776666664 34568899999888555544 4588999
Q ss_pred EEEeCCC--CEEEEEe-CCCcEEEEEccCCc
Q 001628 127 FTIMQHS--NYMLLGD-TAGKISVLKLDQES 154 (1042)
Q Consensus 127 v~~sp~~--~~l~sg~-~dG~I~vwd~~~~~ 154 (1042)
+.+.... ++.+.|. .+|...+..++..+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 8875433 4444444 56665665555544
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.19 E-value=11 Score=37.17 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEEccC
Q 001628 122 EEITSFTIMQHS------NYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 122 ~~It~v~~sp~~------~~l~sg~~dG~I~vwd~~~ 152 (1042)
..|..++|||.| .+|++-+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999965 5789999999999998764
No 459
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.74 E-value=1.7e+02 Score=32.88 Aligned_cols=200 Identities=13% Similarity=0.166 Sum_probs=108.1
Q ss_pred EEEEc---CCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEE--EecCCCE--EEEEeC-C---CCEEEEEcCC
Q 001628 43 KFAYD---PLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQ--FLENQGI--LLNVTS-T---NLIEVWDIDK 111 (1042)
Q Consensus 43 ~la~s---p~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~--fs~~~~~--Lvs~s~-d---g~I~vWd~~~ 111 (1042)
++-.+ |...+|+....++-+.+||.+|+....+...+-.-| .+. |.-+++. |+.++. + ++|++|.++.
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCCCccee-eeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 44445 566777777788889999999877666643221112 122 2223432 444443 2 5799998763
Q ss_pred --CceeeeeecC-------CCeEEEEE--eCC-C-CEEEEEeCCCcEEEEEccCCc-ccee-eeeeecccccccCccccC
Q 001628 112 --KRLSHVHVCK-------EEITSFTI--MQH-S-NYMLLGDTAGKISVLKLDQES-SQIV-KMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 112 --~~~~~~~~h~-------~~It~v~~--sp~-~-~~l~sg~~dG~I~vwd~~~~~-~~~~-~~~~~ip~~~~~~~~~~~ 176 (1042)
+.+..+.... ..+..+|+ ++. + -|+++...+|.+..|.+.... ..+. .....+ .-
T Consensus 137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f----------~~ 206 (381)
T PF02333_consen 137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF----------KV 206 (381)
T ss_dssp TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE----------E-
T ss_pred CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe----------cC
Confidence 4444433211 34566665 343 3 477888899999999886322 1111 111111 11
Q ss_pred CCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCe-----eEEEeCCcccccccccCCceeEEEEE-ccCCC--EEEEE
Q 001628 177 DPAVINILPQPTAESKRILIIFRDGLISLWDIRESK-----SIFSMGGNVLQSVYHETKQVTSACWA-CPIGS--KVAVG 248 (1042)
Q Consensus 177 ~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~-----~~~~~~g~~~~~~~~~~~~I~~l~~~-~~~g~--~l~sg 248 (1042)
...+..|.... ...+|.++-++--|.-|+.+... .+....+ .+....|-.++.- ..++. +|++.
T Consensus 207 ~sQ~EGCVVDD--e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g------~~l~aDvEGlaly~~~~g~gYLivSs 278 (381)
T PF02333_consen 207 GSQPEGCVVDD--ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG------DGLVADVEGLALYYGSDGKGYLIVSS 278 (381)
T ss_dssp SS-EEEEEEET--TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS------SSB-S-EEEEEEEE-CCC-EEEEEEE
T ss_pred CCcceEEEEec--ccCCEEEecCccEEEEEecCCCCCCcceeeecccc------cccccCccceEEEecCCCCeEEEEEc
Confidence 34678888887 78899999999888777776322 2211111 1234556666553 23443 44555
Q ss_pred ecCCeEEEEeCCC
Q 001628 249 YSNGEILIWGVPS 261 (1042)
Q Consensus 249 ~~dG~I~iWd~~~ 261 (1042)
-.+++..+|+...
T Consensus 279 QG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 279 QGDNSFAVYDREG 291 (381)
T ss_dssp GGGTEEEEEESST
T ss_pred CCCCeEEEEecCC
Confidence 5677899999875
No 460
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.53 E-value=8.7 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.1
Q ss_pred EEEEEeCCceEEEEECCCCceeeeeecCC
Q 001628 627 FLVIATKDSSVLVLDSDNGNMLSTNLIHP 655 (1042)
Q Consensus 627 ~L~s~s~Dg~V~vwd~~tg~~i~~~~~~~ 655 (1042)
.++.++.||.|...|..||+.+..+...+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 46677999999999999999998875443
No 461
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.88 E-value=0.84 Score=50.63 Aligned_cols=145 Identities=15% Similarity=0.219 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEE-EEeCCCCEEEEEcCCCceeee-
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILL-NVTSTNLIEVWDIDKKRLSHV- 117 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lv-s~s~dg~I~vWd~~~~~~~~~- 117 (1042)
.+....|-|.+.-||+|+-+..|..||..|+.. +..........|+|..++..++ .+-..+.+.+||+.+..-..+
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~--le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI--LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhccee--cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 445677888888899999999999999884443 3333334444588888766554 455678899999987652222
Q ss_pred --eecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEE
Q 001628 118 --HVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRIL 195 (1042)
Q Consensus 118 --~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~ll 195 (1042)
..|.... +.|++....++.|.-.|.+.+++-..... ++ ..| .|..+++++++.+ .++++
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~--------ii---v~G---kh~RRgtq~av~l---Ed~vi 174 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR--------II---VMG---KHQRRGTQIAVTL---EDYVI 174 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhh--------hh---hhc---ccccceeEEEecc---cceee
Confidence 2233322 67999999999999999999999776542 10 111 1456899999998 34566
Q ss_pred EEECCCeEEE
Q 001628 196 IIFRDGLISL 205 (1042)
Q Consensus 196 s~~~dg~I~v 205 (1042)
.++.|..+.+
T Consensus 175 l~dcd~~L~v 184 (615)
T KOG2247|consen 175 LCDCDNTLSV 184 (615)
T ss_pred ecCcHHHHHH
Confidence 6666665533
No 462
>PHA03098 kelch-like protein; Provisional
Probab=71.84 E-value=1.2e+02 Score=36.16 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=17.5
Q ss_pred CCcEEEEEecC------CcEEEEeccCCeEE
Q 001628 573 NSQHLAVGSDQ------GYVYLLDTEGPTVL 597 (1042)
Q Consensus 573 dg~~La~gs~d------g~V~vwD~~~~~~~ 597 (1042)
++++.+.|+.+ ..+..||..+.+..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 57777777732 45888998877664
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.40 E-value=2.8e+02 Score=34.88 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=94.9
Q ss_pred EecCCCcceEEEEEe---c---CCCEEEEEeCCCCEEEEEcCCCc----------------eeeeeec---CCCeEEEEE
Q 001628 75 LESSEAVSTKFLQFL---E---NQGILLNVTSTNLIEVWDIDKKR----------------LSHVHVC---KEEITSFTI 129 (1042)
Q Consensus 75 ~~~~~~~~v~~l~fs---~---~~~~Lvs~s~dg~I~vWd~~~~~----------------~~~~~~h---~~~It~v~~ 129 (1042)
+......||..|+|. . ....++.+=....+.|....-.+ +..+..+ ..+...|+|
T Consensus 74 w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 74 WSIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred eEcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 333566899999999 3 22235555566777777722111 2222211 146778999
Q ss_pred eCCC-CEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCcc---ccCCCCEEEEEEccCCCCCeEEEEECCCeEEE
Q 001628 130 MQHS-NYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNE---VSGDPAVINILPQPTAESKRILIIFRDGLISL 205 (1042)
Q Consensus 130 sp~~-~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~---~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~v 205 (1042)
+|.. ..+|+-+..|...||++..... ........ .....|.. ......-..+.|.+ +.+.|++..... +.+
T Consensus 154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~-~~~~~~~~-~~~~~gsi~~d~~e~s~w~rI~W~~--~~~~lLv~~r~~-l~~ 228 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWSVWDIKGRPK-RKSSNLRL-SRNISGSIIFDPEELSNWKRILWVS--DSNRLLVCNRSK-LML 228 (765)
T ss_pred ccCccceEEEEeccCcEEEEEeccccc-cCCcceee-ccCCCccccCCCcccCcceeeEecC--CCCEEEEEcCCc-eEE
Confidence 9865 7899999999999999932210 00000111 00111211 11123345788887 677777766554 558
Q ss_pred EeccCCeeEEEeCCcccccccccCCceeEEEEEccC-CCEEEEEecCCeEEEEeCCC
Q 001628 206 WDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI-GSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 206 Wd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~-g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+|++++...... ........|..+.-+ ++ ..++..-. ...|...++..
T Consensus 229 ~d~~~~~~~~~l------~~~~~~~~IlDv~~~-~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 229 IDFESNWQTEYL------VTAKTWSWILDVKRS-PDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred EECCCCCccchh------ccCCChhheeeEEec-CCccceEEEEe-cCeEEEEEccC
Confidence 899886532210 012244567777766 44 22322222 24577777765
No 464
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.91 E-value=80 Score=32.24 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=60.5
Q ss_pred EEEEEeCCCCEEE-EEeccceEEEEEec--cCCcccccceeeecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEE
Q 001628 503 TALYYDGTSRVLV-SGDQSGMVRIFKLK--YEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAV 579 (1042)
Q Consensus 503 ~~l~fsp~~~~La-sg~~dG~V~vw~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~ 579 (1042)
..++|+.+.+.+. +-+.+-+|.-|+.+ +........+..+..+.. ..+ -.--.+++.-+|.+.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~-~e~-----------~~PDGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP-FES-----------LEPDGMTIDTEGNLYVA 228 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC-cCC-----------CCCCcceEccCCcEEEE
Confidence 5678888776554 45667788888854 333222112222221100 011 11123444557888888
Q ss_pred EecCCcEEEEeccCCeEEEecccccccCCCeEEEEEE
Q 001628 580 GSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 616 (1042)
Q Consensus 580 gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs 616 (1042)
....|+|..+|..+++++....+. ...|+|++|-
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eiklP---t~qitsccFg 262 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKLP---TPQITSCCFG 262 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEcC---CCceEEEEec
Confidence 899999999999999988444432 3489999998
No 465
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.88 E-value=1.5e+02 Score=31.41 Aligned_cols=167 Identities=11% Similarity=0.063 Sum_probs=99.0
Q ss_pred eEEEEecCCCcceEEEEEecCCCEEEEEeCCC--CEEEEEcCCCceeeeeecCCCeE--EEEEeCCCCEEEEEeCCCcEE
Q 001628 71 TQALLESSEAVSTKFLQFLENQGILLNVTSTN--LIEVWDIDKKRLSHVHVCKEEIT--SFTIMQHSNYMLLGDTAGKIS 146 (1042)
Q Consensus 71 ~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg--~I~vWd~~~~~~~~~~~h~~~It--~v~~sp~~~~l~sg~~dG~I~ 146 (1042)
+...+.+....-...|.|..++.++-+.+.-| .|+.+|+.++++......+.... .++... ++....-=.+|...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 55667777777788899988887778887766 59999999999665555554332 233332 23333445688999
Q ss_pred EEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccccc
Q 001628 147 VLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVY 226 (1042)
Q Consensus 147 vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~ 226 (1042)
+||..+.+. +... ..+ +.=..++ . ++..|+.......+.++|..+-+........ ...
T Consensus 114 ~yd~~tl~~-~~~~--~y~------------~EGWGLt--~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~---~~g 171 (264)
T PF05096_consen 114 VYDPNTLKK-IGTF--PYP------------GEGWGLT--S--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT---DNG 171 (264)
T ss_dssp EEETTTTEE-EEEE--E-S------------SS--EEE--E--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E---ETT
T ss_pred EEccccceE-EEEE--ecC------------CcceEEE--c--CCCEEEEECCccceEEECCcccceEEEEEEE---ECC
Confidence 999987652 2122 221 1223344 2 7888999988999999999886655443111 001
Q ss_pred ccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCCc
Q 001628 227 HETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSI 262 (1042)
Q Consensus 227 ~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~~ 262 (1042)
..-..+.-+.|. +|...|=.-....|...|..+|
T Consensus 172 ~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 172 RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-
T ss_pred EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCC
Confidence 123345567775 6777776767777888888776
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.62 E-value=20 Score=43.05 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=42.5
Q ss_pred CCCCEEEEEEcCCeEEEEecC-----CC-eEEEEecCC--------------------CcceEEEEEec----CCCEEEE
Q 001628 48 PLQKILAAATKDGRIKLYGRH-----NN-TQALLESSE--------------------AVSTKFLQFLE----NQGILLN 97 (1042)
Q Consensus 48 p~~~~LA~gs~dg~I~iw~~~-----g~-~~~~~~~~~--------------------~~~v~~l~fs~----~~~~Lvs 97 (1042)
++...++++..||.+...... |. .......+. ...+..+.++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467789999999998887654 11 111111111 12344455655 6779999
Q ss_pred EeCCCCEEEEEcCCCcee
Q 001628 98 VTSTNLIEVWDIDKKRLS 115 (1042)
Q Consensus 98 ~s~dg~I~vWd~~~~~~~ 115 (1042)
.+.|+++++||+.++++.
T Consensus 236 l~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EETTSEEEEEETTTTCEE
T ss_pred EeCCCeEEEEECCCCeEE
Confidence 999999999999999853
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.31 E-value=65 Score=35.74 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecCCCe-EEEEe-----cCCCcceEEEEEecC----CCEEEEEeCC--------
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRHNNT-QALLE-----SSEAVSTKFLQFLEN----QGILLNVTST-------- 101 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~-~~~~~-----~~~~~~v~~l~fs~~----~~~Lvs~s~d-------- 101 (1042)
.+++|+|.|++++++ +.+.|+|++++.+|.. ..+.. .........++|+|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999988765 5779999999966444 22212 223456788999994 4333444322
Q ss_pred CCEEEEEcCCC--c------ee-eeee---cCCCeEEEEEeCCCCEEEEEeCCCc
Q 001628 102 NLIEVWDIDKK--R------LS-HVHV---CKEEITSFTIMQHSNYMLLGDTAGK 144 (1042)
Q Consensus 102 g~I~vWd~~~~--~------~~-~~~~---h~~~It~v~~sp~~~~l~sg~~dG~ 144 (1042)
..|.-|..... . +. .... ....-..|+|.|++.+.++.+..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 34555555444 1 11 1111 1234567999999954444444433
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.89 E-value=49 Score=39.09 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCc
Q 001628 499 GIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPH 533 (1042)
Q Consensus 499 ~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~ 533 (1042)
..-++++.-+|.+.-++.+..||.+++|++.....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 35678899999999999999999999999976443
No 469
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.67 E-value=3.1e+02 Score=34.28 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=46.2
Q ss_pred CcEEEEeccCCeEEEecccccccCC---------------CeEEEEEEeeecCCCCceEEEE-EeCCceEEEEECCCCce
Q 001628 584 GYVYLLDTEGPTVLYQKHIASDISS---------------GIVSLQFETCSLQGFEKNFLVI-ATKDSSVLVLDSDNGNM 647 (1042)
Q Consensus 584 g~V~vwD~~~~~~~~~~~~~~~~~~---------------~V~sl~fs~~~~~~~~~~~L~s-~s~Dg~V~vwd~~tg~~ 647 (1042)
|.|.-||+.+++++++......... +...=.... .+.+++. |+.|+.++.+|.+||+.
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~T------agglvF~~gt~d~~l~A~D~~tGk~ 714 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLAT------AGGLVFIGATQDNYLRAYDLSTGKE 714 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEE------cCCEEEEEeCCCCEEEEEECCCCce
Confidence 7788899999998876665321111 010000111 5677776 78999999999999999
Q ss_pred eeeeecCCCCCC
Q 001628 648 LSTNLIHPKKPS 659 (1042)
Q Consensus 648 i~~~~~~~~~~~ 659 (1042)
+....+.....+
T Consensus 715 lW~~~l~~~~~a 726 (764)
T TIGR03074 715 LWKARLPAGGQA 726 (764)
T ss_pred eeEeeCCCCccc
Confidence 988765544433
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.37 E-value=76 Score=36.22 Aligned_cols=94 Identities=10% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCeEEEEEeCCCCEEEEEeccceEEEEEe---ccCCcccccceeeecccccCccc-eee---eEEEeecCCCeEEEEEec
Q 001628 500 IPLTALYYDGTSRVLVSGDQSGMVRIFKL---KYEPHAIENSFLSFTGSKKGNSH-IIH---SVKVMKINGSIISLNMNR 572 (1042)
Q Consensus 500 ~~V~~l~fsp~~~~Lasg~~dG~V~vw~~---~~~~~~~~~~~~~~~~~~~g~~~-~~~---~~~~~~~~~~V~~l~~sp 572 (1042)
-.|..+..++.|..++-.+.+|.+.++-. ............ ..+ .++ ........-.+...+|+|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~--------v~CRt~~i~~~~ftss~~ltl~Qa~WHP 175 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKST--------VNCRTTPVAERFFTSSTSLTLKQAAWHP 175 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCce--------EEEEeecccceeeccCCceeeeeccccC
Confidence 45778888999999999999998888762 222111100000 000 000 011111223466788999
Q ss_pred CC---cEEEEEecCCcEEEEeccCCeEEEecc
Q 001628 573 NS---QHLAVGSDQGYVYLLDTEGPTVLYQKH 601 (1042)
Q Consensus 573 dg---~~La~gs~dg~V~vwD~~~~~~~~~~~ 601 (1042)
+. .+|.+=+.|..|+|||....+-+|...
T Consensus 176 ~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 176 SSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred CccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 76 678888999999999998877665433
No 471
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=67.68 E-value=3.3e+02 Score=34.29 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=107.6
Q ss_pred EcCCCCEEEEEEcCCeEEEEecC----------CCeE-EEEec-CCCcceEEEEEe--cCCCEEEEEeCCCCEEEEEcCC
Q 001628 46 YDPLQKILAAATKDGRIKLYGRH----------NNTQ-ALLES-SEAVSTKFLQFL--ENQGILLNVTSTNLIEVWDIDK 111 (1042)
Q Consensus 46 ~sp~~~~LA~gs~dg~I~iw~~~----------g~~~-~~~~~-~~~~~v~~l~fs--~~~~~Lvs~s~dg~I~vWd~~~ 111 (1042)
.......|+..|+.|++...... |... ..+.. +....+..+... .+..+++.++.+|.++-.++..
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 34455667777888887766432 1111 01222 222334444432 2445899999999999887643
Q ss_pred Cc------e--eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcc-ceeeeeeecccccccCccccCCCCEEE
Q 001628 112 KR------L--SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESS-QIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 112 ~~------~--~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~-~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
-. . ..+.. .+.+..+........++..+..|.+..+.+..-.. ......... ........|.+
T Consensus 622 ~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~-------i~L~~~E~Vv~ 693 (800)
T TIGR01063 622 FSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRG-------IKLKNEDFVVS 693 (800)
T ss_pred hhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeec-------ccCCCCCEEEE
Confidence 21 1 11122 34455554555557788888889888777654210 000000000 01122345666
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCccccc--ccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCC
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQS--VYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVP 260 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~--~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~ 260 (1042)
+..-. +...++..+..|.++...+..-....+ +++.... +......+..+... .+...++..+.+|.+..+...
T Consensus 694 ~~~v~--~~~~ll~vT~~G~~Kr~~l~e~~~~~R-~~kGv~~ikl~~~~d~lv~~~~v-~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 694 LLVVS--EESYLLIVTENGYGKRTSIEEYRETSR-GGKGVKSIKITDRNGQVVGAIAV-DDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred EEEec--cccEEEEEecCCcEEEEEHHHccccCC-CCcceEEEEccCCCCeEEEEEEe-cCCCeEEEEecCCeEEEeeHh
Confidence 65544 455789999999988887654222111 1111111 12222445454443 445567777888888777765
Q ss_pred C
Q 001628 261 S 261 (1042)
Q Consensus 261 ~ 261 (1042)
+
T Consensus 770 e 770 (800)
T TIGR01063 770 D 770 (800)
T ss_pred h
Confidence 4
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.50 E-value=43 Score=42.64 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=92.3
Q ss_pred EEEecC-CCEEEEEeCCCCEEEEEcCCC-ceeeeeecCCCeEEEEEe--------CCCCEEEEEeCCCcEEEEEccCCcc
Q 001628 86 LQFLEN-QGILLNVTSTNLIEVWDIDKK-RLSHVHVCKEEITSFTIM--------QHSNYMLLGDTAGKISVLKLDQESS 155 (1042)
Q Consensus 86 l~fs~~-~~~Lvs~s~dg~I~vWd~~~~-~~~~~~~h~~~It~v~~s--------p~~~~l~sg~~dG~I~vwd~~~~~~ 155 (1042)
+.+-|. ++.-++ .|+.+.+|+.+++ ....+.+....|..+..- |.-+++++-..--.|.++-+.-...
T Consensus 84 mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 84 MGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF 161 (1311)
T ss_pred eccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc
Confidence 444443 333343 5899999999984 477777777767666542 3445555444444566665543321
Q ss_pred ceeee----eeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEec----cCCe------eEEEeCC--
Q 001628 156 QIVKM----KYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDI----RESK------SIFSMGG-- 219 (1042)
Q Consensus 156 ~~~~~----~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~----~~~~------~~~~~~g-- 219 (1042)
..... .+.++ .....|.++... +..+++.++.||. +|.+ ..+- .+....+
T Consensus 162 ~~~~~~f~~~~~i~---------~dg~~V~~I~~t---~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 162 TGELSIFNTSFKIS---------VDGVSVNCITYT---ENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred cCcccccccceeee---------cCCceEEEEEec---cCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHH
Confidence 11111 12221 124578888854 4556777777774 4443 2211 1111100
Q ss_pred -----cccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 220 -----NVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 220 -----~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
..++....+..+|..++.. .....+.+-+..|+|.+|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEccC
Confidence 1112223567799999886 6778889999999999999987
No 473
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.14 E-value=2.6e+02 Score=32.84 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=87.9
Q ss_pred cCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeecCCCe----EEEEEeCCC
Q 001628 58 KDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEI----TSFTIMQHS 133 (1042)
Q Consensus 58 ~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~I----t~v~~sp~~ 133 (1042)
..+.+.++|.+|.+...+......... +.+.++|.+++... +.+...|+..+.+.. ...+..- ..+...|+|
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~-~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~-~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNS-FKQLPNGNLLIGSG--NRLYEIDLLGKVIWE-YDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SS-EEE-TTS-EEEEEB--TEEEEE-TT--EEEE-EE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCCccEEEEEccCccccce-eeEcCCCCEEEecC--CceEEEcCCCCEEEe-eecCCcccccccccEECCCC
Confidence 457788899998777666644322221 66788996665544 788888887654322 2222211 346677888
Q ss_pred CEEEEEe--------------CCCcEEEEEccCCccceeee--------eeec----cc--ccccCc-cccCCCCEEEEE
Q 001628 134 NYMLLGD--------------TAGKISVLKLDQESSQIVKM--------KYII----PL--SASHGN-EVSGDPAVINIL 184 (1042)
Q Consensus 134 ~~l~sg~--------------~dG~I~vwd~~~~~~~~~~~--------~~~i----p~--~~~~~~-~~~~~~~V~~v~ 184 (1042)
++|+.+. .|. |..+| .+++. ... ++.. +. ....+. ....-.-+.++.
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~v--v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEV--VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-E--EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCE--EEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 8888777 222 33334 33321 100 1111 00 000000 011113688999
Q ss_pred EccCCCCCeEEEEEC-CCeEEEEeccCCeeEEEeCCccccccc----------ccCCce----eEEEEEccCCCEEEEEe
Q 001628 185 PQPTAESKRILIIFR-DGLISLWDIRESKSIFSMGGNVLQSVY----------HETKQV----TSACWACPIGSKVAVGY 249 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~-dg~I~vWd~~~~~~~~~~~g~~~~~~~----------~~~~~I----~~l~~~~~~g~~l~sg~ 249 (1042)
+.| ..+.|++.+. -..|...|..+++....+|...--... ....++ ....| .-|++-+.--
T Consensus 278 yd~--~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~--~~gQH~~~~~ 353 (477)
T PF05935_consen 278 YDP--SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW--FWGQHTAHLI 353 (477)
T ss_dssp EET--TTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS------SS-EEEEE-
T ss_pred EeC--CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc--cccccceEEc
Confidence 998 4555555555 448888998899988887644211000 001111 11223 2466777777
Q ss_pred cCC---eEEEEeCCCc
Q 001628 250 SNG---EILIWGVPSI 262 (1042)
Q Consensus 250 ~dG---~I~iWd~~~~ 262 (1042)
.+| .|.++|-...
T Consensus 354 ~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 354 PDGPQGNLLVFDNGNG 369 (477)
T ss_dssp TTS---SEEEEE--TT
T ss_pred CCCCeEEEEEEECCCC
Confidence 777 8999987653
No 474
>PHA02790 Kelch-like protein; Provisional
Probab=66.71 E-value=2.6e+02 Score=32.80 Aligned_cols=144 Identities=6% Similarity=-0.052 Sum_probs=69.2
Q ss_pred cCCCEEEEEeCC--CCEEEEEcCCCceeeeeecCCCeEE-EEEeCCCCEEEEEeCCC---cEEEEEccCCccceeeeeee
Q 001628 90 ENQGILLNVTST--NLIEVWDIDKKRLSHVHVCKEEITS-FTIMQHSNYMLLGDTAG---KISVLKLDQESSQIVKMKYI 163 (1042)
Q Consensus 90 ~~~~~Lvs~s~d--g~I~vWd~~~~~~~~~~~h~~~It~-v~~sp~~~~l~sg~~dG---~I~vwd~~~~~~~~~~~~~~ 163 (1042)
-++...+.|+.+ ..+..||..+.+-......+.+... ....-+++.-++|+.++ .+..||..+.. ....+.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~- 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPS- 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCC-
Confidence 355556666653 4588898877653333332222221 22233566666776554 46678877655 222110
Q ss_pred cccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCC
Q 001628 164 IPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGS 243 (1042)
Q Consensus 164 ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~ 243 (1042)
.+. . .... +++.. ++...++| |.+.+||..+++-.... . ........ +++. -+|.
T Consensus 394 m~~-~--------r~~~-~~~~~---~~~IYv~G---G~~e~ydp~~~~W~~~~--~----m~~~r~~~-~~~v--~~~~ 448 (480)
T PHA02790 394 TYY-P--------HYKS-CALVF---GRRLFLVG---RNAEFYCESSNTWTLID--D----PIYPRDNP-ELII--VDNK 448 (480)
T ss_pred CCC-c--------cccc-eEEEE---CCEEEEEC---CceEEecCCCCcEeEcC--C----CCCCcccc-EEEE--ECCE
Confidence 000 0 0011 12211 34444444 45678888876643321 1 11111111 2233 3678
Q ss_pred EEEEEecC-----CeEEEEeCCC
Q 001628 244 KVAVGYSN-----GEILIWGVPS 261 (1042)
Q Consensus 244 ~l~sg~~d-----G~I~iWd~~~ 261 (1042)
.+++|+.+ .++..||..+
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEECCcCCCcccceEEEEECCC
Confidence 88888764 3466666665
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.25 E-value=0.98 Score=50.13 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=79.9
Q ss_pred cccCceEEEEEcCCCCEEEE-EEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCce
Q 001628 36 GFPSGCNKFAYDPLQKILAA-ATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL 114 (1042)
Q Consensus 36 G~~~~v~~la~sp~~~~LA~-gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~ 114 (1042)
-.|+....++||-++..+|+ +-..+.+.+|+...+.-..+.......-.-+.|++....++.+-..+.+.|++-.+.+.
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhh
Confidence 45677788999998876655 45568999999873222222222212222278999999999998999999999988775
Q ss_pred eeeee-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001628 115 SHVHV-CKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 115 ~~~~~-h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~ 152 (1042)
....+ |..+++++++.+.+.. +.++.|..+.+-...+
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTTQEG 189 (615)
T ss_pred hhhhcccccceeEEEeccccee-eecCcHHHHHHhhhcc
Confidence 55555 9999999999887654 5555555554444333
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=65.73 E-value=2.2e+02 Score=31.47 Aligned_cols=152 Identities=11% Similarity=0.260 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCe------EEEEecCC------CeEE----EEecCCCc-------ceEEEEEecCCCEE
Q 001628 39 SGCNKFAYDPLQKILAAATKDGR------IKLYGRHN------NTQA----LLESSEAV-------STKFLQFLENQGIL 95 (1042)
Q Consensus 39 ~~v~~la~sp~~~~LA~gs~dg~------I~iw~~~g------~~~~----~~~~~~~~-------~v~~l~fs~~~~~L 95 (1042)
+..+.++|+|....+++-+.+|. +..+.... .+.. .+..+... -.-.|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56899999965555555566676 55544331 1111 11122212 23367787888777
Q ss_pred EEEeCC------CCEEEEEcCCCceeee---------------eecCCCeEEEEEeCCCCEEEEEeCCC-------c---
Q 001628 96 LNVTST------NLIEVWDIDKKRLSHV---------------HVCKEEITSFTIMQHSNYMLLGDTAG-------K--- 144 (1042)
Q Consensus 96 vs~s~d------g~I~vWd~~~~~~~~~---------------~~h~~~It~v~~sp~~~~l~sg~~dG-------~--- 144 (1042)
++--.+ ..|.-++.+......+ .......-+++++|+++.|+++.+.. .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 776666 7788888763222222 11235688999999999887765432 1
Q ss_pred ----EEEEEccCCcc--ceeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEE
Q 001628 145 ----ISVLKLDQESS--QIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILI 196 (1042)
Q Consensus 145 ----I~vwd~~~~~~--~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls 196 (1042)
++++.++.... ......|.+...... .....|..+.+-| ++..++.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~----~~~~~isd~~al~--d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA----PGDNGISDIAALP--DGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccc----cCCCCceeEEEEC--CCcEEEE
Confidence 56666554321 122223333211000 0245788888888 6664443
No 477
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=65.32 E-value=2.1e+02 Score=31.18 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCC-EEEEEcCCCc-------
Q 001628 42 NKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNL-IEVWDIDKKR------- 113 (1042)
Q Consensus 42 ~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~-I~vWd~~~~~------- 113 (1042)
....+..++++|+.|+.+| +.+.+..+............+|+++...+..+.|++.+.... ++++++..-.
T Consensus 5 ~~~~~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~ 83 (302)
T smart00036 5 WNHPITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALG 83 (302)
T ss_pred EccccccCCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccC
Q ss_pred ----------eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeee--ecccccccCccccCCCCEE
Q 001628 114 ----------LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKY--IIPLSASHGNEVSGDPAVI 181 (1042)
Q Consensus 114 ----------~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~--~ip~~~~~~~~~~~~~~V~ 181 (1042)
...+....+...+-........++++....+|.++.+.....+.....- .. ....+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~--------~~~~~~~~~ 155 (302)
T smart00036 84 SARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLF--------PLISPVPVF 155 (302)
T ss_pred CccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccc--------cCCCCccce
Q ss_pred EEEEccCCCCCeEEEEECCCeEEEEeccC
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRE 210 (1042)
Q Consensus 182 ~v~~~p~~d~~~lls~~~dg~I~vWd~~~ 210 (1042)
.+..++......+.+|+..+-..++++..
T Consensus 156 ~~~~~~~~~~~~lcvG~~~~~~~~~~~~~ 184 (302)
T smart00036 156 VELVSSSFERPGICIGSDKGGGDVVQFHE 184 (302)
T ss_pred EeeecccccceEEEEEEcCCCCeEEEEee
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=65.30 E-value=21 Score=42.95 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred cCCcEEEEEecCCcEEEEeccC----CeEE----Eeccc-----ccc----------cCCCeEEEEEEeeecCCCCceEE
Q 001628 572 RNSQHLAVGSDQGYVYLLDTEG----PTVL----YQKHI-----ASD----------ISSGIVSLQFETCSLQGFEKNFL 628 (1042)
Q Consensus 572 pdg~~La~gs~dg~V~vwD~~~----~~~~----~~~~~-----~~~----------~~~~V~sl~fs~~~~~~~~~~~L 628 (1042)
++...++++..||.+...+... +... +..+. ... ..+.+.++++++... .+..+|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI--NDDTFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee--CCCCEE
Confidence 4678899999999988887753 1111 11110 000 012344444442111 157899
Q ss_pred EEEeCCceEEEEECCCCceeeeeecC
Q 001628 629 VIATKDSSVLVLDSDNGNMLSTNLIH 654 (1042)
Q Consensus 629 ~s~s~Dg~V~vwd~~tg~~i~~~~~~ 654 (1042)
++.+.|+++++||+.++.++.+..+.
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEEeCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999999998777554
No 479
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=64.98 E-value=4e+02 Score=34.24 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=36.0
Q ss_pred ceeeeeecccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCeEEEEecC-CCcceEEEEEecC
Q 001628 29 PRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESS-EAVSTKFLQFLEN 91 (1042)
Q Consensus 29 ~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~-~~~~v~~l~fs~~ 91 (1042)
+|.+....+.....-+..+-...++++-...|.|.+|+.+.+-.++..+. ....+.++...++
T Consensus 615 ~r~lq~i~fd~~~~vv~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~d 678 (1366)
T KOG1896|consen 615 LRMLQRIPFDSGAIVVQTSVADPYVAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPAD 678 (1366)
T ss_pred chheeEeccccCCcEEEEeccCceEEEEEcCCceEEEEeccccchhhccCcccceeEEEechhh
Confidence 34444444444334445556678899999999999999883333333322 2344444555444
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=64.26 E-value=2e+02 Score=30.59 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=87.4
Q ss_pred cceEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-e--eeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccce
Q 001628 81 VSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-L--SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQI 157 (1042)
Q Consensus 81 ~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~--~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~ 157 (1042)
..+..+.|+.+ +...+..+.-++|.|+.+.. + .......+--.+ +.-.|+|.+++..+.-..++|+.+.+...
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 45556667665 46667778889999998876 2 222222344445 44578999999977678889988765211
Q ss_pred eeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEE
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACW 237 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~ 237 (1042)
..-.+.. ....-..++.+ |++-..++.|+-+.+-|+.....-... ....-...+.++..
T Consensus 163 lagrya~-----------~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp~sPvli------~~~n~g~g~~sv~v 221 (370)
T COG5276 163 LAGRYAL-----------PGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNPHSPVLI------GSYNTGPGTYSVSV 221 (370)
T ss_pred eeeeecc-----------CCCCceeEEEe----cCeEEEEEeCCCeEEEEccCCCCCeEE------EEEecCCceEEEEe
Confidence 1111111 12223445554 778888889998999999874311110 00111235666655
Q ss_pred EccCCCEEEEEecCCeEEEEeCCC
Q 001628 238 ACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 238 ~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+ ++-.+++.. ..| +.+-|..+
T Consensus 222 s-dnr~y~vvy-~eg-vlivd~s~ 242 (370)
T COG5276 222 S-DNRAYLVVY-DEG-VLIVDVSG 242 (370)
T ss_pred c-CCeeEEEEc-ccc-eEEEecCC
Confidence 4 343333333 332 55666654
No 481
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.53 E-value=1.5e+02 Score=34.26 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 229 TKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 229 ~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
...|.+++.. +..+.+++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d-~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVD-PSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEE-TTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEec-CCcCEEEEEeCCCcEEEEEEeC
Confidence 3459999997 7789999999999999999975
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=63.04 E-value=26 Score=38.87 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=94.6
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecCCCe---EEEEec-CC--CcceE-EEEEecCCCEEEEEeCCCCEEEE-E
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNT---QALLES-SE--AVSTK-FLQFLENQGILLNVTSTNLIEVW-D 108 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~---~~~~~~-~~--~~~v~-~l~fs~~~~~Lvs~s~dg~I~vW-d 108 (1042)
.+.++..+-..|++++|.+-+. .++.+++.+.+. ...... +. ...|+ .+.....+.-|..++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4578899999999999988776 778888876211 111111 11 12222 22234456678889999999888 4
Q ss_pred cCCC-c--ee---eeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 109 IDKK-R--LS---HVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 109 ~~~~-~--~~---~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
.... . +. .+.-.+.+|..+.-....+-+++-+.+|++.++.-..... .... .. -.....
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~------~~-------~~~~~~ 362 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFE------RA-------YQAPQL 362 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehh------hh-------hcCcce
Confidence 3322 2 11 1122235566655445556777888899888887555431 1110 00 124455
Q ss_pred EEEccCCCCCeEEEEECCCeEEEEeccCCe
Q 001628 183 ILPQPTAESKRILIIFRDGLISLWDIRESK 212 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~dg~I~vWd~~~~~ 212 (1042)
+.++| +++++++ ...|.++++.+++..
T Consensus 363 ~~~Sp--~~~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 363 VAMSP--NQAYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred eeeCc--ccchhee-ecCCceEEEEecCCC
Confidence 88999 6776665 456788888888743
No 483
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.99 E-value=15 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.5
Q ss_pred ceEEEEEeCCceEEEEECCCCceeeee
Q 001628 625 KNFLVIATKDSSVLVLDSDNGNMLSTN 651 (1042)
Q Consensus 625 ~~~L~s~s~Dg~V~vwd~~tg~~i~~~ 651 (1042)
+..+++++.+|.+..+|..+|+.+...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446888899999999999999987653
No 484
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=60.72 E-value=50 Score=34.57 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=47.6
Q ss_pred CCeEEEEEecC-------CcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeecCCC--CceEEEEEeC
Q 001628 563 GSIISLNMNRN-------SQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGF--EKNFLVIATK 633 (1042)
Q Consensus 563 ~~V~~l~~spd-------g~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~--~~~~L~s~s~ 633 (1042)
..||||+--.. -..|++|.++|.|+|.|-++-.++.+..+.+ -++ .+.-+- .| -+-.|++++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps---vPv-~i~~~G----~~devdyRI~Va~R 248 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS---VPV-FISVSG----QYDEVDYRIVVACR 248 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC---Cce-EEEEEe----eeeccceEEEEEeC
Confidence 56777764321 2479999999999999999998886666542 133 222220 01 2457888999
Q ss_pred CceEEEEE
Q 001628 634 DSSVLVLD 641 (1042)
Q Consensus 634 Dg~V~vwd 641 (1042)
||.|++..
T Consensus 249 dg~iy~ir 256 (257)
T PF14779_consen 249 DGKIYTIR 256 (257)
T ss_pred CCEEEEEe
Confidence 99998753
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.53 E-value=2.3e+02 Score=29.93 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEecC-CCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeee
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVH 118 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~ 118 (1042)
....++-+|||..-.++.-.|.|--.|-. |+++ +........-..+..-||+..-++=+.. -|.-.|-++..+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 34566777777766666655555555544 3333 3333333444456777888666653332 4444555555544332
Q ss_pred ----ecCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEE
Q 001628 119 ----VCKEEITSFTIMQHSNYMLLGDT---------AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILP 185 (1042)
Q Consensus 119 ----~h~~~It~v~~sp~~~~l~sg~~---------dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~ 185 (1042)
.-........|++.|++-++|.. .+.|++|+...+ ..-..|+.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------------~gpyGi~a 196 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------------GGPYGICA 196 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------------CCCcceEE
Confidence 22356778889999998888863 234444444322 24456788
Q ss_pred ccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 001628 186 QPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 186 ~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
.| +|..-++...++.|...|..++.....- .-......... .|+++-|..-++-...|.+..+|...
T Consensus 197 tp--dGsvwyaslagnaiaridp~~~~aev~p------~P~~~~~gsRr-iwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 197 TP--DGSVWYASLAGNAIARIDPFAGHAEVVP------QPNALKAGSRR-IWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CC--CCcEEEEeccccceEEcccccCCcceec------CCCcccccccc-cccCccCcEEEeccCCceeeEeCccc
Confidence 88 8888888888888877777665322210 00110111112 25556777777767777777777654
No 486
>PRK13613 lipoprotein LpqB; Provisional
Probab=58.94 E-value=4e+02 Score=32.23 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCEEEEEEcCCe-EEEEecCC--C----eEEEEecCCCcceEEEEEecCCCEEEEEeC--CC--CEEEEE
Q 001628 40 GCNKFAYDPLQKILAAATKDGR-IKLYGRHN--N----TQALLESSEAVSTKFLQFLENQGILLNVTS--TN--LIEVWD 108 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~-I~iw~~~g--~----~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~--dg--~I~vWd 108 (1042)
.+.+.|.++++..+|.-..++. +++....+ . ....+... ..+.-.|.+++ .+=++.. ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~---~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADG---RLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccC---cccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 6788999999999988877663 44433321 2 11223322 23444566666 4444422 12 255554
Q ss_pred cCCCceeee--eecCC-CeEEEEEeCCCCEEEEEeC---CCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEE
Q 001628 109 IDKKRLSHV--HVCKE-EITSFTIMQHSNYMLLGDT---AGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVIN 182 (1042)
Q Consensus 109 ~~~~~~~~~--~~h~~-~It~v~~sp~~~~l~sg~~---dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~ 182 (1042)
- ++....+ ....+ .|+.+.+|+||-+++.-.. .+.|+|=-+.........+.... ... ..-..+.+
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~--~l~-----~~l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFR--SLA-----PELEDVTD 511 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccE--Eec-----cCCCccce
Confidence 3 3342222 22334 7999999999977765443 35676666554321111111100 001 11235899
Q ss_pred EEEccCCCCCeEEEEEC-CCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccCCC-EEEEEecCCeEE
Q 001628 183 ILPQPTAESKRILIIFR-DGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGS-KVAVGYSNGEIL 255 (1042)
Q Consensus 183 v~~~p~~d~~~lls~~~-dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~g~-~l~sg~~dG~I~ 255 (1042)
+.|.. +...++.+.. ++...+|-+.-+- ..........-..+..++-. .+.. .++.+..++.|.
T Consensus 512 ~~W~~--~~sL~Vlg~~~~~~~~v~~v~vdG------~~~~~~~~~~v~~~~~ia~~-~~~~~~~v~~~~~~~v~ 577 (599)
T PRK13613 512 MSWAG--DSQLVVLGREEGGVQQARYVQVDG------STPPASAPAAVTGVESITAS-EDERLPLVAGTSEDGIV 577 (599)
T ss_pred eEEcC--CCEEEEEeccCCCCcceEEEecCC------cCcccccccCCCCeeEEEec-CCCCceEEEEecCCCeE
Confidence 99997 5555444543 3244455443211 01010111233455555554 3444 455535666553
No 487
>PLN02193 nitrile-specifier protein
Probab=57.59 E-value=3.4e+02 Score=31.81 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=18.4
Q ss_pred CCcEEEEEecC----CcEEEEeccCCeEE
Q 001628 573 NSQHLAVGSDQ----GYVYLLDTEGPTVL 597 (1042)
Q Consensus 573 dg~~La~gs~d----g~V~vwD~~~~~~~ 597 (1042)
+++.+++|+.+ ..|.+||+.+.+..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 56777777755 45889999887764
No 488
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=57.35 E-value=1e+02 Score=37.43 Aligned_cols=150 Identities=11% Similarity=0.136 Sum_probs=84.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccccccccCCCCCCCeEEEEEeCCCCEEEEEeccceEEEEEeccCCccccccee
Q 001628 461 LFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFL 540 (1042)
Q Consensus 461 ~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~~~~ 540 (1042)
.+..|.++|.|-++.-..+...... ..........+.++.+++. -+..|.-||++-.|--.....
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~------~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gS------- 613 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVT------SEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGS------- 613 (925)
T ss_pred cccccCccceeEEeeccCCccccee------ccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCC-------
Confidence 4667888999998876622211111 0111222356666666553 344566777776664332211
Q ss_pred eecccccCccceeeeEEEeecCCCeEEEEEecCCcEEEEEecCCcEEEEeccCCeEEEecccccccCCCeEEEEEEeeec
Q 001628 541 SFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSL 620 (1042)
Q Consensus 541 ~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~ 620 (1042)
|++. |...+.....+|.+++|..| ...|+.+|.|.|+...+.....+-.....|...|+++.+..
T Consensus 614 -----wd~e----p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~--- 678 (925)
T KOG3522|consen 614 -----WDGE----PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD--- 678 (925)
T ss_pred -----CCCC----CccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC---
Confidence 1111 11233334488999998754 55678899999999876554422222223566899999995
Q ss_pred CCCCceEEEEEeCCceEEEEECCC
Q 001628 621 QGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 621 ~~~~~~~L~s~s~Dg~V~vwd~~t 644 (1042)
.+-+++.++.| .++.++.+|
T Consensus 679 ---~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 679 ---NGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred ---CceEEEEcCCC-EEEEecccc
Confidence 55566655544 445556553
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.31 E-value=33 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=21.5
Q ss_pred cCCcEEEEEe-cCCcEEEEeccCCeEEEecc
Q 001628 572 RNSQHLAVGS-DQGYVYLLDTEGPTVLYQKH 601 (1042)
Q Consensus 572 pdg~~La~gs-~dg~V~vwD~~~~~~~~~~~ 601 (1042)
|++++|.++. .+++|.++|..+..++....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666554 58899999998887764333
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=56.79 E-value=4.3e+02 Score=31.99 Aligned_cols=215 Identities=15% Similarity=0.201 Sum_probs=104.3
Q ss_pred ceeeeeecccCc--eEEEEEcCC---CCEEEEEEcCCe-EE--EEecC----------CCeEEEEecCCCcceEEEEEec
Q 001628 29 PRLVFHYGFPSG--CNKFAYDPL---QKILAAATKDGR-IK--LYGRH----------NNTQALLESSEAVSTKFLQFLE 90 (1042)
Q Consensus 29 ~~~~~~~G~~~~--v~~la~sp~---~~~LA~gs~dg~-I~--iw~~~----------g~~~~~~~~~~~~~v~~l~fs~ 90 (1042)
|+.+..|.+|.+ |.|+..-.. .++-++|-.++. -+ +.... +.....+...-...|..+.|.+
T Consensus 60 PKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~ 139 (670)
T PF10395_consen 60 PKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSS 139 (670)
T ss_pred cceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEec
Confidence 556777777753 566655322 346666645533 22 22221 1111222323346777899999
Q ss_pred CCCEEEEEeCCCCEEEEEcCCCceee---ee-ecC------CCeEEEEEeCCCCEEEEEeC-CC---cEEEEEccCCccc
Q 001628 91 NQGILLNVTSTNLIEVWDIDKKRLSH---VH-VCK------EEITSFTIMQHSNYMLLGDT-AG---KISVLKLDQESSQ 156 (1042)
Q Consensus 91 ~~~~Lvs~s~dg~I~vWd~~~~~~~~---~~-~h~------~~It~v~~sp~~~~l~sg~~-dG---~I~vwd~~~~~~~ 156 (1042)
++..+++...+|.|.+||.....+.. +. .+. .-|..........++++-+. ++ ..+++.+......
T Consensus 140 ~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~ 219 (670)
T PF10395_consen 140 DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSS 219 (670)
T ss_pred CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcc
Confidence 99999999999999999993332111 11 111 22222222223355555544 32 4556666111110
Q ss_pred eeeeeeecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEE
Q 001628 157 IVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSAC 236 (1042)
Q Consensus 157 ~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~ 236 (1042)
...+...+ .+........|.-. +|. |. ...++.|.+|++..-+....+.-. .........+.++.
T Consensus 220 ~~El~s~~----------~e~~~~~~s~f~Y~-~G~-LY-~l~~~~i~~ysip~f~~~~tI~l~--~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 220 IFELSSTI----------LENFGLEDSKFCYQ-FGK-LY-QLSKKTISSYSIPNFQIQKTISLP--SIIDKESDDLVSLK 284 (670)
T ss_pred eEEeehhe----------eccCCcccceEEEe-CCE-EE-EEeCCEEEEEEcCCceEEEEEEec--hhhccccccceEee
Confidence 11110000 00111222223221 333 22 227778888988776655443111 01111113444443
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCC
Q 001628 237 WACPIGSKVAVGYSNGEILIWGVPS 261 (1042)
Q Consensus 237 ~~~~~g~~l~sg~~dG~I~iWd~~~ 261 (1042)
+|..++++.+. ++.|.+.|+.-
T Consensus 285 --~~s~nRvLLs~-~nkIyLld~~~ 306 (670)
T PF10395_consen 285 --PPSPNRVLLSV-NNKIYLLDLKF 306 (670)
T ss_pred --cCCCCeEEEEc-CCEEEEEeehh
Confidence 35666655544 45799999875
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=55.79 E-value=5.1e+02 Score=32.49 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCCCEEEEEeccceEEEEEeccCCccccc----cee-eeccc-ccCccceeeeEEEeecCCCeEEEEEecC
Q 001628 500 IPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN----SFL-SFTGS-KKGNSHIIHSVKVMKINGSIISLNMNRN 573 (1042)
Q Consensus 500 ~~V~~l~fsp~~~~Lasg~~dG~V~vw~~~~~~~~~~~----~~~-~~~~~-~~g~~~~~~~~~~~~~~~~V~~l~~spd 573 (1042)
..|.+++....+..++.+-.||+|.+++-.+.+...+. ... .++.. ..| ..+... .++..++|||+
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~G-------f~fp~~-~~~~~vafSPt 331 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAG-------FHFPCI-QPPLHVAFSPT 331 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccc-------cccccC-CCCceEEECcc
Confidence 57888888888889999999999999998765443321 000 00000 000 111111 26677999999
Q ss_pred CcEEEEEecCCcEE
Q 001628 574 SQHLAVGSDQGYVY 587 (1042)
Q Consensus 574 g~~La~gs~dg~V~ 587 (1042)
+.-++.-..+|.+.
T Consensus 332 ~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 332 MCSLVQIDEDGKTK 345 (753)
T ss_pred cceEEEEecCCCce
Confidence 99999989888855
No 492
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=54.68 E-value=3.5e+02 Score=30.34 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=42.8
Q ss_pred EEcCCCCEEEEEE-cCCeEEEE--ecCC-CeEEEEecCCCcceEEEEEecCCCEEEEEeCCCCEEEEEcCCCceeeeeec
Q 001628 45 AYDPLQKILAAAT-KDGRIKLY--GRHN-NTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVC 120 (1042)
Q Consensus 45 a~sp~~~~LA~gs-~dg~I~iw--~~~g-~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h 120 (1042)
+|.++|+.|+.++ .||.=.+| |+.. .+.++-.++..... ....+|+.+.++-......|+--|+++++...+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 4678886665554 46655555 5553 34444444332222 255678888887777777888899999886555554
Q ss_pred C-CCeEEEEEe
Q 001628 121 K-EEITSFTIM 130 (1042)
Q Consensus 121 ~-~~It~v~~s 130 (1042)
+ ..+-...|.
T Consensus 121 p~~~~g~gt~v 131 (386)
T PF14583_consen 121 PDDWKGYGTWV 131 (386)
T ss_dssp -TTEEEEEEEE
T ss_pred Cccccccccee
Confidence 4 333334443
No 493
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=53.14 E-value=1.4e+02 Score=34.08 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCceeeee-ecccCceEEEEEcCCCC-------EEEEEEcCCeEEEEecC--CCeEEEEe---cCCCcc
Q 001628 16 GGSSDGLKSSDVDPRLVFH-YGFPSGCNKFAYDPLQK-------ILAAATKDGRIKLYGRH--NNTQALLE---SSEAVS 82 (1042)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~-~G~~~~v~~la~sp~~~-------~LA~gs~dg~I~iw~~~--g~~~~~~~---~~~~~~ 82 (1042)
++.+.+|-..++..-++.. +.....+ .+.|.|+-+ .-.+|-++..|.-.|.. |+.....+ -.....
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~ 564 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK 564 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccc
Q ss_pred eEEEEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 001628 83 TKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISV 147 (1042)
Q Consensus 83 v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~v 147 (1042)
..+..-..+| +++.++..|.|++||--... ...+.+....|..+.++.+|++++..|.+-.+.+
T Consensus 565 Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 565 FSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT 629 (776)
T ss_pred ccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=51.97 E-value=2.6e+02 Score=33.94 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.0
Q ss_pred ccCceEEEEEcCCCCEEEEEEcCCeEEEEecC
Q 001628 37 FPSGCNKFAYDPLQKILAAATKDGRIKLYGRH 68 (1042)
Q Consensus 37 ~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~ 68 (1042)
+...|.+.+||.|.+.+++.+.+..|.+++..
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence 44568888999999988888888888887653
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.62 E-value=4.1e+02 Score=30.23 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=75.6
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEcCCCc-eeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcc---ceeeee
Q 001628 86 LQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESS---QIVKMK 161 (1042)
Q Consensus 86 l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~---~~~~~~ 161 (1042)
+..++++.+++.+...+.++-||-.... ..........++++.+.+++..++++ ..|.+..=+-..... .+...+
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceeecc
Confidence 3455666555544433333334432221 11222234578999999998887666 556654432222110 011110
Q ss_pred eecccccccCccccCCCCEEEEEEccCCCCCeEEEEECCCeEEEEeccCCeeEEEeCCcccccccccCCceeEEEEEccC
Q 001628 162 YIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPI 241 (1042)
Q Consensus 162 ~~ip~~~~~~~~~~~~~~V~~v~~~p~~d~~~lls~~~dg~I~vWd~~~~~~~~~~~g~~~~~~~~~~~~I~~l~~~~~~ 241 (1042)
. ......++++.|.+ ++. +++++.+|.+... .+.++.-... .....-...+..+.|. ++
T Consensus 323 ----~-------~~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s-~D~G~tW~~~-----~~~~~~~~~ly~v~f~-~~ 381 (398)
T PLN00033 323 ----I-------KSRGFGILDVGYRS--KKE-AWAAGGSGILLRS-TDGGKSWKRD-----KGADNIAANLYSVKFF-DD 381 (398)
T ss_pred ----c-------CCCCcceEEEEEcC--CCc-EEEEECCCcEEEe-CCCCcceeEc-----cccCCCCcceeEEEEc-CC
Confidence 0 00123588899886 444 7777788887554 3443321110 0001224567788886 44
Q ss_pred CCEEEEEecCCeEEEE
Q 001628 242 GSKVAVGYSNGEILIW 257 (1042)
Q Consensus 242 g~~l~sg~~dG~I~iW 257 (1042)
+. ....+.+|.|.-|
T Consensus 382 ~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 382 KK-GFVLGNDGVLLRY 396 (398)
T ss_pred Cc-eEEEeCCcEEEEe
Confidence 44 4555677887665
No 496
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.49 E-value=8 Score=46.43 Aligned_cols=109 Identities=8% Similarity=0.051 Sum_probs=61.4
Q ss_pred EcCCCCEEEEEEcCCeEEEEecCCCeEEEEecCCCcceEEEE-----------EecCCCEEEEEeCCCCEEEEEcC-CCc
Q 001628 46 YDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQ-----------FLENQGILLNVTSTNLIEVWDID-KKR 113 (1042)
Q Consensus 46 ~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~-----------fs~~~~~Lvs~s~dg~I~vWd~~-~~~ 113 (1042)
|-+..-++.++-.+|.|++...+.....++.+|. ..+..++ .+|||..++.++.||.++.|-+. +++
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs-~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHS-QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcC-CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 3345567888888899988665511223344433 2222233 58899999999999999988753 121
Q ss_pred -----eeeeeecC-CCeEEEEEeCCC---------CEEEEEe-CCCcEEEEEccCCcc
Q 001628 114 -----LSHVHVCK-EEITSFTIMQHS---------NYMLLGD-TAGKISVLKLDQESS 155 (1042)
Q Consensus 114 -----~~~~~~h~-~~It~v~~sp~~---------~~l~sg~-~dG~I~vwd~~~~~~ 155 (1042)
+.....|. .+-.|.-+.... .++++++ .+..+++|.-...+|
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 22223344 222332233221 2334443 456788898766654
No 497
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.03 E-value=35 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 001628 40 GCNKFAYDPLQKILAAATKDGRIKLYG 66 (1042)
Q Consensus 40 ~v~~la~sp~~~~LA~gs~dg~I~iw~ 66 (1042)
.|.++|..+ +++|++++.+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 467777764 5999999999999984
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=50.28 E-value=3.8e+02 Score=29.40 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=18.4
Q ss_pred ecCCcEEEEEecCC----cEEEEeccCCeEE
Q 001628 571 NRNSQHLAVGSDQG----YVYLLDTEGPTVL 597 (1042)
Q Consensus 571 spdg~~La~gs~dg----~V~vwD~~~~~~~ 597 (1042)
..++++.+.|+.++ .+.+||..+.+..
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34577888887664 3567888876654
No 499
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=49.31 E-value=67 Score=22.46 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=18.4
Q ss_pred cCCCEEEEEe-CCCCEEEEEcCCCcee
Q 001628 90 ENQGILLNVT-STNLIEVWDIDKKRLS 115 (1042)
Q Consensus 90 ~~~~~Lvs~s-~dg~I~vWd~~~~~~~ 115 (1042)
|++++|.++. .+++|.++|..++...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 4566665554 5788999999887743
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=48.93 E-value=48 Score=39.60 Aligned_cols=141 Identities=8% Similarity=0.067 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCEEEEEEcC----CeEEEEecCCCeEEEEecCCCcceEEEEEecCCCEEEEEeCCCC-----EEEEEcCC
Q 001628 41 CNKFAYDPLQKILAAATKD----GRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNL-----IEVWDIDK 111 (1042)
Q Consensus 41 v~~la~sp~~~~LA~gs~d----g~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~-----I~vWd~~~ 111 (1042)
-.-+.|-.|-.+.+++... ..+++|...|.+.. ...|....-..|.|-|+|..+++...||. |+++.-.+
T Consensus 204 k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds-~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 204 KKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDS-ASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred ceEEEEccCcceeeecchhcccccceeeecccccccc-ccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC
Confidence 3456777777788887665 44778887743322 22222233344889999999999886653 55554332
Q ss_pred ---CceeeeeecCCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCccceeeeeeecccccccCccccCCCCEEEEEEccC
Q 001628 112 ---KRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPT 188 (1042)
Q Consensus 112 ---~~~~~~~~h~~~It~v~~sp~~~~l~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~v~~~p~ 188 (1042)
|....-.+....++.++|+-....++++.. ..|.+|-..+-.. ....... -..+.-+.|+|.
T Consensus 283 LrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~~~lwttkNyhW-YLK~e~~-------------ip~~s~vkwhpe 347 (1243)
T COG5290 283 LRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NLLKLWTTKNYHW-YLKVERQ-------------IPGISYVKWHPE 347 (1243)
T ss_pred cccCCccccCCchhhhhhhhhhHHHHHHHHhhc-ceEEEEEccceEE-EEEEeec-------------CCCcceeeeccc
Confidence 223222334455667777666665555543 4688887655331 0011111 135666899995
Q ss_pred CCCCeEEEEE
Q 001628 189 AESKRILIIF 198 (1042)
Q Consensus 189 ~d~~~lls~~ 198 (1042)
..+.++...
T Consensus 348 -~~nTl~f~d 356 (1243)
T COG5290 348 -EKNTLLFRD 356 (1243)
T ss_pred -cCcEEEEec
Confidence 444444433
Done!