Query 001628
Match_columns 1042
No_of_seqs 714 out of 3781
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 17:03:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001628.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_924-928//hhsearch_pdb/001628hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 583.8 81.3 760 23-835 2-845 (902)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 427.9 66.6 566 29-813 6-576 (577)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 414.5 55.4 578 29-812 606-1244(1249)
4 1nr0_A Actin interacting prote 1.0 1 1 393.1 59.8 556 38-764 18-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 393.0 52.9 412 74-648 610-1038(1249)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 391.3 62.6 520 35-762 54-577 (577)
7 1nr0_A Actin interacting prote 1.0 1 1 390.8 60.3 537 35-715 56-610 (611)
8 1pgu_A Actin interacting prote 1.0 1 1 359.4 53.9 566 35-764 15-613 (615)
9 1pgu_A Actin interacting prote 1.0 1 1 358.3 56.5 508 34-667 59-593 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 338.6 59.5 614 78-821 15-787 (902)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=583.78 Aligned_cols=760 Identities=15% Similarity=0.165 Sum_probs=531.6
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 88886743421216457627999948998999999499199992588769999518975538999964998999994899
Q 001628 23 KSSDVDPRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTN 102 (1042)
Q Consensus 23 ~~~~~~~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg 102 (1042)
+++.|+++...++||++.|++++|+|++++||+|+.||.|++|+.. ..+......+..+|.+++|+| +++|++++.|+
T Consensus 2 ~~~~~~~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~ 79 (902)
T 2oaj_A 2 KNKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKD 79 (902)
T ss_dssp CCTTEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEECSSCCCEEEEEEET-TTEEEEEETTC
T ss_pred CHHEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECC-CCEEEEEECCC
T ss_conf 4122202120216889984899997999989999297989999689-947999868999779999908-98899998959
Q ss_pred CEEEEECCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCC-CCCCCCCCCEE
Q ss_conf 79999738996556641499748999917998999990798399998068742024422202464445-86546998779
Q 001628 103 LIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASH-GNEVSGDPAVI 181 (1042)
Q Consensus 103 ~I~vWd~~~~~~~~~~~h~~~It~i~~sp~~~~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~-~~~~~~~~~V~ 181 (1042)
+|++||+.+++......|.+.|++++|+|++++|++|+.||.|++||+..... .++.++..+.. .....|.++|.
T Consensus 80 ~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~----~~~~i~~~~~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL----SSFKLDNLQKSSFFPAARLSPIV 155 (902)
T ss_dssp EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE----EEEEECCHHHHHTCSSSCCCCCC
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCC----CCCEECCCCCCCCCCCCCCCCEE
T ss_conf 59999899996899974899879999879999899994999299999999962----65030432100025445789738
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC----------CCCCCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 99974579999599998799299996569826898277621----------01223587555899995699889999607
Q 001628 182 NILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL----------QSVYHETKQVTSACWACPIGSKVAVGYSN 251 (1042)
Q Consensus 182 ~i~~~p~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~----------~~~~~~~~~I~~i~~~~~~g~~lvsg~~d 251 (1042)
+++|+|. +...+++++.||.| +||+.+++.+..+.+... .....|...|.+++|+ |+|..|++++.|
T Consensus 156 sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~D 232 (902)
T 2oaj_A 156 SIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHED 232 (902)
T ss_dssp EEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETT
T ss_pred EEEECCC-CCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECC
T ss_conf 9997669-99989999189849-99877896579983355776777654433234567776899985-999999999899
Q ss_pred CEEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCCC-CCEEEEEECC
Q ss_conf 829999678865434--3357863453212367877777650489998807-97707999364346777-5089996045
Q 001628 252 GEILIWGVPSILNLK--TEECGTQITPICKLNLGYKLDKIPISSLKWVYAD-GKASRLYIMGASDFVSM-NLLQIVLLNE 327 (1042)
Q Consensus 252 G~I~iWd~~~~~~~~--~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~-~~~~~i~~~gg~~~~~~-~~~~v~~~~~ 327 (1042)
|.|++||+.++.... .........+......+......+|..+.|+... +.+..+++.|+.+.... ....+..+..
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 93999987899688888501234578777678888555677457999734999887899968877778885289995478
Q ss_pred ----------------CCCCEEEEEEECCCCCEEEEEECCCCCCC--CCCCCCEEEEEECCCCEEEEECCCCEEEECCCC
Q ss_conf ----------------56631488742899973459982489999--999951899982188169830421002211489
Q 001628 328 ----------------QTESRTTKLALPLSEPCIDMEIISSSSDP--NKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQ 389 (1042)
Q Consensus 328 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~ 389 (1042)
........+.+.....+.++.+.+...+. ...++..+++++.+|.|++|+. +.+
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~--------~~g 384 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY--------PSG 384 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET--------TTC
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEC--------CCC
T ss_conf 987555425565466417452278741899954799997788988677878506999917984899978--------999
Q ss_pred CCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHC---CCCCCCCCCCCCCCCC--CCCCCCCEEEE
Q ss_conf 999999983111016777863129998405852223323678764511---9998777767789976--67887619999
Q 001628 390 SRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKS---VPPLLDFETKLKDGSQ--SHSKVKNLFIT 464 (1042)
Q Consensus 390 ~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~l~t 464 (1042)
....+. ......+..|.+.|+++++.+... ..|...... ..+.+. ++...+. +++++++++++
T Consensus 385 ~~~~~~--~~~~~~l~~~~~~v~~~~~s~~~~-------~~w~~~~~~~~~~~~~l~---G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 385 IFTDKA--SLFPQNLSWLRPLATTSMAASVPN-------KLWLGALSAAQNKDYLLK---GGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp CEECCG--GGSCGGGTTBTTBEEEEEEEEEEH-------HHHHHHHHTTBCCCCSCC---CSBCCCCCCCCCSEEEEEEE
T ss_pred CCCCCC--CCCCCCCCCCCCCEEEEEEEECCH-------HHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCEEEE
T ss_conf 855655--568985223589724899997499-------999888860469997545---78577875333666758999
Q ss_pred EECCCCEEEEECCCCCEEE--EEECCC-CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCC-----
Q ss_conf 8079829999498983255--520122-33346777997858999827998999990632199999626886334-----
Q 001628 465 GHSDGAINFWDVSCPLFLL--ILSLKQ-QSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIE----- 536 (1042)
Q Consensus 465 g~~Dg~IriWd~~~~~~~~--l~~l~~-~~~~~~~~~~~~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~----- 536 (1042)
|+.|++||+||+..+.+.. .+.+.. .... .+|...|++++|+|++++||+|+.||+|+||++........
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~--~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLN--KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTT--CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred ECCCCCEEEEECCCCCCCCCCEEEEECHHHCC--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCC
T ss_conf 65898389997877645677367750154137--7888764699963899969999458579999924865557545577
Q ss_pred -----C------------CEEEECCCCCC--CCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEE
Q ss_conf -----5------------44663045557--6421224897404987589998069849999935880999953488399
Q 001628 537 -----N------------SFLSFTGSKKG--NSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL 597 (1042)
Q Consensus 537 -----~------------~~~~~~~~~~g--~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~iwD~~~~~~~ 597 (1042)
. ....++..... ...+.+...+..|.+.|++++||||| +||+|+.|++|+|||++++.++
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEE
T ss_conf 866511345513467965432242368988777601469998688867799964876-8999958976999988898399
Q ss_pred EECCCC---CCCCCCEEEEEEEEE--ECCCCCCEEEEEEECCCEEEEEEC---CCCCEEEEEECC--CCCCCCCEEEEEE
Q ss_conf 941323---335888499999950--037888518999837853999977---999645642028--8999971499993
Q 001628 598 YQKHIA---SDISSGIVSLQFETC--SLQGFEKNFLVIATKDSSVLVLDS---DNGNMLSTNLIH--PKKPSRALFMQIL 667 (1042)
Q Consensus 598 ~~~~~~---~~~~~~V~sl~fs~~--~~~~~~~~~L~sgs~Dg~V~vwd~---~tg~~i~~~~~~--~~~~~~~~~~~~~ 667 (1042)
+...+. .+|...|++++|+.+ ..+++++.+|++|+.|++|++||+ .+|+++..+.-+ .+..++++.+..+
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~ 689 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAF 689 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEE
T ss_pred EEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEE
T ss_conf 97024672646666139999999841789876338999956873999999558998689996672440788964799858
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEE--EE---
Q ss_conf 2997676686410001479998888888887099999548239992585334651357896404768135898--77---
Q 001628 668 NGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSEKAACAYSLSHAVQGVKKVLYKKKFHSSSCCWAST--FY--- 742 (1042)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~~~i~i~~~~~~~qg~~~~~~~~~~~~~~~~~~~~--~~--- 742 (1042)
+...+....++...++.++++...+ +++++|+++.+|+|++++ .|...+. +. .+|++..+ +.
T Consensus 690 ~~~~~~~~~a~~~~~~~l~~~~~~~------~~~l~~~~~~ir~~~~~~-----~k~~~k~-~~-~~~~~~~v~~~~~~~ 756 (902)
T 2oaj_A 690 SKETKSSCLATIPKMQNLSKGLCIP------GIVLITGFDDIRLITLGK-----SKSTHKG-FK-YPLAATGLSYISTVE 756 (902)
T ss_dssp ETTTCCBCBCBHHHHHGGGGTCCCC------EEEEEECSSEEEEECTTC-----CCEEEEE-CS-SCEEEEEEEEEEEEC
T ss_pred ECCCCCCCCCCHHHHHCCCCCCCCC------EEEEEEECCCEEEEECCC-----CCCEEEE-CC-CCEEEEEEEEEEECC
T ss_conf 6687973668878972557788777------399999354059996753-----3512367-25-620144777887013
Q ss_pred ----ECCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCEEEECCCCEEEEEEEECCC
Q ss_conf ----5694599999724849997278831122223354000489989766420111058769999076117999851035
Q 001628 743 ----SGSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFISALRQR 818 (1042)
Q Consensus 743 ----~~~~~~lv~~~~~g~I~i~slp~l~~i~~~~l~~~~~~~~~~~~~~~~~i~~s~~G~~~~~~~~~~~~~~s~l~~~ 818 (1042)
..+++.|++++++|.|++|++|+|+.+.+.++++ .+ +.+.....+++.+|++++..+++|+++++++.+.
T Consensus 757 ~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~----~~--~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~~~~ 830 (902)
T 2oaj_A 757 KNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF----PI--AAKYITESSVLRNGDIAIRVSEFQASLFSTVKEQ 830 (902)
T ss_dssp SSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS----CC--CHHHHTTCEECTTSCEEEECSSSEEEEEEEESCC
T ss_pred CCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCC----CC--CCCCCCCEEECCCCCEEEEECHHHEEEEEEECCC
T ss_conf 55544673699999279959999785647784165886----02--4464320289689889998270264899997477
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 63224565123457761
Q 001628 819 DFFRFLDSACQVYSYDP 835 (1042)
Q Consensus 819 ~~~~~~~~~~~~~~~~~ 835 (1042)
..++-+ ...+|++.+
T Consensus 831 ~~~~~~--~~~l~~~~~ 845 (902)
T 2oaj_A 831 DTLAPV--SDTLYINGI 845 (902)
T ss_dssp CCCCCC--CCBCCCTTC
T ss_pred CCCCCC--CCEEECCCC
T ss_conf 777887--743427877
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=427.94 Aligned_cols=566 Identities=14% Similarity=0.165 Sum_probs=403.0
Q ss_pred CEEEE-EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 43421-21645762799994899899999949919999258876999951897553899996499899999489979999
Q 001628 29 PRLVF-HYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 29 ~~~~~-~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
.++.. ..||.+.|+|++|+|++++||+|+.|+.|+||+..++....+.+|. ..|++++|+|++++|++++.|++|+||
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~-~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS-SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 3894398789985799999899899999938998999979997899996898-998999998999999999698979999
Q ss_pred ECCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 73899655664149974899991799899999079839999806874202442220246444586546998779999745
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQP 187 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~i~~sp~~~~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~~~p 187 (1042)
|.....+..+.+|...|++++|+|++++|++++.|+.+++|+...... .. ...+...+.++.++|
T Consensus 85 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~--~~-------------~~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 85 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QT-------------LTGHSSSVWGVAFSP 149 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE--EE-------------ECCCSSCEEEEEECT
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEE--EE-------------CCCCCCCEEEEEEEC
T ss_conf 899978999978999889999989999899980798335202355200--11-------------047777435554203
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 79999599998799299996569826898277621012235875558999956998899996078299996788654343
Q 001628 188 TAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKT 267 (1042)
Q Consensus 188 ~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG~I~iWd~~~~~~~~~ 267 (1042)
++..++.+..++.+++|+........ ...+...+.++.|+ |++..+++++.||.|++|+.... ...
T Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~~w~~~~~-~~~- 215 (577)
T 2ymu_A 150 --DGQTIASASDDKTVKLWNRNGQLLQT---------LTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQ-LLQ- 215 (577)
T ss_dssp --TSSCEEEEETTSEEEEECTTSCEEEE---------EECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSC-EEE-
T ss_pred --CCCCCEECCCCCCEECCCCCEEEEEE---------CCCCCCCEEEEEEC-CCCCEEEEECCCCEEEEEECCCC-EEE-
T ss_conf --77632002555310000000000000---------26877635665416-99778999859998999949996-899-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEE
Q ss_conf 35786345321236787777765048999880797707999364346777508999604556631488742899973459
Q 001628 268 EECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDM 347 (1042)
Q Consensus 268 ~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1042)
....+ ..++..+.+.
T Consensus 216 ~~~~~---------------~~~v~~~~~s-------------------------------------------------- 230 (577)
T 2ymu_A 216 TLTGH---------------SSSVRGVAFS-------------------------------------------------- 230 (577)
T ss_dssp EEECC---------------SSCEEEEEEC--------------------------------------------------
T ss_pred EEECC---------------CCCEEEEEEC--------------------------------------------------
T ss_conf 99468---------------8988999997--------------------------------------------------
Q ss_pred EECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 98248999999995189998218816983042100221148999999998311101677786312999840585222332
Q 001628 348 EIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSA 427 (1042)
Q Consensus 348 ~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~~ 427 (1042)
.+...++....+|.+++|+.... .......|...|+++.|.+++..+++++
T Consensus 231 -----------~dg~~l~~~~~d~~i~~w~~~~~------------------~~~~~~~~~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 231 -----------PDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp -----------TTSSCEEEEETTSCEEEECTTSC------------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------CCCCEEEEEECCCEEEEEECCCC------------------EEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf -----------99999999918998999959997------------------9999806889879999968999999995
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 367876451199987777677899766--788761999980798299994989832555201223334677799785899
Q 001628 428 DEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTAL 505 (1042)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~Vt~i 505 (1042)
.+..+.+|+...........+...+.. +++++..+++++.||+|++||.....+. .+ ..|...|+++
T Consensus 282 ~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---~~--------~~~~~~v~~~ 350 (577)
T 2ymu_A 282 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---TL--------TGHSSSVWGV 350 (577)
T ss_dssp TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---EE--------CCCSSCEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEE---EE--------ECCCCCEEEE
T ss_conf 999799994899589997068897699999999999999969995999969997257---87--------4788977999
Q ss_pred EEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf 98279989999906321999996268863345446630455576421224897404987589998069849999935880
Q 001628 506 YYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGY 585 (1042)
Q Consensus 506 ~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~ 585 (1042)
+|+|++.+|++++.||.|++|+...... ..+..|...|++++|+|++++|++++.|+.
T Consensus 351 ~~s~~g~~l~~~~~dg~v~~~~~~~~~~----------------------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 351 AFSPDGQTIASASDDKTVKLWNRNGQLL----------------------QTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTCCEE----------------------EEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EECCCCCEEEEEECCCEEEEECCCCCEE----------------------EEECCCCCCEEEEEECCCCCEEEEEECCCE
T ss_conf 9989999999996999899990899789----------------------985278897489999899999999949998
Q ss_pred EEEEECCCCEEE-EECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 999953488399-9413233358884999999500378885189998378539999779996456420288999971499
Q 001628 586 VYLLDTEGPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFM 664 (1042)
Q Consensus 586 V~iwD~~~~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~ 664 (1042)
|++||..+..+. +.. |...|++++|+| ++.+|++++.|+.|++||.. ++.+.....+ ...+.++
T Consensus 409 v~~~~~~~~~~~~~~~-----~~~~v~~~~~s~------d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~---~~~v~~~ 473 (577)
T 2ymu_A 409 VKLWNRNGQLLQTLTG-----HSSSVWGVAFSP------DDQTIASASDDKTVKLWNRN-GQLLQTLTGH---SSSVRGV 473 (577)
T ss_dssp EEEECTTCCEEEEEEC-----CSSCEEEEEECT------TSSEEEEEETTSEEEEEETT-SCEEEEEECC---SSCEEEE
T ss_pred EEEEECCCCEEEEECC-----CCCCEEEEEECC------CCCEEEEECCCCEEEEEECC-CCEEEEECCC---CCCEEEE
T ss_conf 9999699978989628-----899757999989------99999999399989999799-9889997278---9977899
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEE
Q ss_conf 993299767668641000147999888888888709999954-8239992585334651357896404768135898775
Q 001628 665 QILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYS 743 (1042)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~-~~i~i~~~~~~~qg~~~~~~~~~~~~~~~~~~~~~~~ 743 (1042)
.+.. ++.++++++. ..+++|+... +.+....-+...+. .+..+
T Consensus 474 ~~sp----------------------------d~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~--~l~~s 517 (577)
T 2ymu_A 474 AFSP----------------------------DGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVR--GVAFS 517 (577)
T ss_dssp EECT----------------------------TSCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEE--EEEEC
T ss_pred EECC----------------------------CCCEEEEEECCCEEEEECCCC------CEEEEEECCCCCEE--EEEEC
T ss_conf 9969----------------------------999999991989799993999------78999867999989--99991
Q ss_pred CCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEECCCCCEEEECCCCEEEEEE
Q ss_conf 6945999997248499972788311222233540004899897664201110587699990761179998
Q 001628 744 GSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFIS 813 (1042)
Q Consensus 744 ~~~~~lv~~~~~g~I~i~slp~l~~i~~~~l~~~~~~~~~~~~~~~~~i~~s~~G~~~~~~~~~~~~~~s 813 (1042)
+++..|+.+..||.|++|+++. +.+..+.-|. .....+.|++||++++..+.+...+++
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~----------~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS----------SSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTS-CEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCC-CEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 8999999998969999996999-7898971888----------887899996899999999089999996
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=414.45 Aligned_cols=578 Identities=11% Similarity=0.104 Sum_probs=355.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 4342121645762799994899899999949919999258-876999951897553899996499899999489979999
Q 001628 29 PRLVFHYGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVW 107 (1042)
Q Consensus 29 ~~~~~~~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vW 107 (1042)
+......||.+.|++++|+|++++||+|+.||.|++|+.. +.....+..|. ..|.+++|+|++++|++++.|+.|++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-DEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC-CCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 3227871666648999987999989999488949999989997888760677-778999992699989998189959998
Q ss_pred ECCCCC-EEEEEECCCCEEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 738996-556641499748999917--99899999079839999806874202442220246444586546998779999
Q 001628 108 DIDKKR-LSHVHVCKEEITSFTIMQ--HSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINIL 184 (1042)
Q Consensus 108 d~~~~~-~~~~~~h~~~It~i~~sp--~~~~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~ 184 (1042)
|+.++. +..+..|...|++++|+| +..++++|+.||.|++||+.++.. .. . ...|...|.++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~---~---------~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RN---T---------MFGHTNSVNHCR 750 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EE---E---------ECCCSSCEEEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH--HH---E---------ECCCCCCEEEEE
T ss_conf 779993689995899737999984089965999980897099998999634--22---0---------127779788999
Q ss_pred ECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC-----CCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 74579999599998799299996569826898277621-----0122358755589999569988999960782999967
Q 001628 185 PQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL-----QSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGV 259 (1042)
Q Consensus 185 ~~p~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~-----~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG~I~iWd~ 259 (1042)
|+| ++..+++++.||.|++||+.++.....+..... .........+.+++|+ |+|..+++++ ++.+.+|+.
T Consensus 751 ~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~-~~~v~~~d~ 826 (1249)
T 3sfz_A 751 FSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-ADGDKIIVAA-KNKVLLFDI 826 (1249)
T ss_dssp ECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC-TTSSEEEEEE-TTEEEEEET
T ss_pred EEC--CCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCEEEEEC-CCCEEEEEE
T ss_conf 925--999899997898599996888865530202321024677644565017999997-8998899975-895999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 88654343357863453212367877777650489998807977079993643467775089996045566314887428
Q 001628 260 PSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALP 339 (1042)
Q Consensus 260 ~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 339 (1042)
..+........++. .++..+.|. +.+..
T Consensus 827 ~~~~~~~~~~~~~~---------------~~v~~~~~s---p~~~~---------------------------------- 854 (1249)
T 3sfz_A 827 HTSGLLAEIHTGHH---------------STIQYCDFS---PYDHL---------------------------------- 854 (1249)
T ss_dssp TTCCEEEEEECSSS---------------SCCCEEEEC---SSTTE----------------------------------
T ss_pred CCCCCEEEECCCCC---------------CCEEEEEEC---CCCCE----------------------------------
T ss_conf 68972357747877---------------760799982---78888----------------------------------
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEEC
Q ss_conf 99973459982489999999951899982188169830421002211489999999983111016777863129998405
Q 001628 340 LSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITG 419 (1042)
Q Consensus 340 ~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~ 419 (1042)
+++.+.+|.+.+|+..... .......|...|+++.|+++
T Consensus 855 ------------------------l~~~~~dg~v~vwd~~~~~-----------------~~~~~~~h~~~v~~v~~spd 893 (1249)
T 3sfz_A 855 ------------------------AVIALSQYCVELWNIDSRL-----------------KVADCRGHLSWVHGVMFSPD 893 (1249)
T ss_dssp ------------------------EEEECSSSCEEEEETTTTE-----------------EEEEECCCSSCEEEEEECTT
T ss_pred ------------------------EEEEECCCEEEEEECCCCC-----------------EEEECCCCCCCEEEEEECCC
T ss_conf ------------------------9999479869999867895-----------------65322787665689999899
Q ss_pred CCCCCCCCHHHHHHHHHCC----------------------------------------CCCCCCCCCCCCCCC--CCCC
Q ss_conf 8522233236787645119----------------------------------------998777767789976--6788
Q 001628 420 NSFILSSADEDYSLLAKSV----------------------------------------PPLLDFETKLKDGSQ--SHSK 457 (1042)
Q Consensus 420 ~~~i~s~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~--~~~~ 457 (1042)
+..+++++.+..+.+|+.. ..... ......+. ++++
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID--YLPEAQVSCCCLSP 971 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE--EECCSCEEEEEECT
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEE--ECCCCCEEEEEECC
T ss_conf 9989999589728988746652010211331036897599868998137762489844765089--72567278999958
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf 76199998079829999498983255520122333467779978589998279989999906321999996268863345
Q 001628 458 VKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN 537 (1042)
Q Consensus 458 ~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~ 537 (1042)
+++++++|+.||.|++|+...+.....+ .+|...|++++|+|++.+|++++.||.|++|++.......
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~----------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-- 1039 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSG----------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-- 1039 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEEC----------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC--
T ss_pred CCCEEEEECCCCCEEEEECCCCCEEEEC----------CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE--
T ss_conf 9977999869998899975787234430----------3677716899998999989998699879999879996689--
Q ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 44663045557642122489740498758999806984999993588099995348839994132333588849999995
Q 001628 538 SFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFET 617 (1042)
Q Consensus 538 ~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~iwD~~~~~~~~~~~~~~~~~~~V~sl~fs~ 617 (1042)
. ..| ...|.++.|+|++ .+++++.||.|++||+.++..+.. ...|...|++++|+|
T Consensus 1040 --~--------~~~----------~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~---~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1040 --L--------QAH----------QETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERD---FTCHQGTVLSCAISS 1095 (1249)
T ss_dssp --C--------BCC----------SSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEE---EECCSSCCCCEEECS
T ss_pred --E--------ECC----------CCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEE---ECCCCCCEEEEEECC
T ss_conf --8--------527----------8738999990899-589997889689988898865588---746688489999989
Q ss_pred EECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00378885189998378539999779996456420288999971499993299767668641000147999888888888
Q 001628 618 CSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPK 697 (1042)
Q Consensus 618 ~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 697 (1042)
++.+|++++.|++|++||..+++.+..... ....+.++.+. ++
T Consensus 1096 ------d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~---h~~~v~~~~~s----------------------------~d 1138 (1249)
T 3sfz_A 1096 ------DATKFSSTSADKTAKIWSFDLLSPLHELKG---HNGCVRCSAFS----------------------------LD 1138 (1249)
T ss_dssp ------SSSSCEEECCSSCCCEECSSSSSCSBCCCC---CSSCEEEEEEC----------------------------SS
T ss_pred ------CCCEEEEECCCCCEEEEECCCCCEEEEECC---CCCCEEEEEEC----------------------------CC
T ss_conf ------999899984999489987898500125506---87767999997----------------------------99
Q ss_pred CCEEEEEEC-CCEEEEECCCCCCCCCEEEEEE---------EECCCCEEEEEEEEECCCEEEEEEEECCEEEEECCCCCC
Q ss_conf 709999954-8239992585334651357896---------404768135898775694599999724849997278831
Q 001628 698 QWFVLLCSE-KAACAYSLSHAVQGVKKVLYKK---------KFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLPELS 767 (1042)
Q Consensus 698 ~~~ll~~~~-~~i~i~~~~~~~qg~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp~l~ 767 (1042)
+.++++++. ..+++|++.+. +..... ........ .+..++++..|+.. +|.|++|++...+
T Consensus 1139 g~~lat~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~--~l~fs~dg~~l~s~--~g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1139 GILLATGDDNGEIRIWNVSDG-----QLLHSCAPISVEEGTATHGGWVT--DVCFSPDSKTLVSA--GGYLKWWNVATGD 1209 (1249)
T ss_dssp SSEEEEEETTSCCCEEESSSS-----CCCCCCCCCC-------CCSCCC--EEEECTTSSCEEEE--SSSEEEBCSSSCB
T ss_pred CCEEEEEECCCEEEEEECCCC-----CEEEEECCCCCCCCCCCCCCEEE--EEEECCCCCEEEEC--CCEEEEEECCCCC
T ss_conf 998999828997999988999-----45788514444421025674289--99997899989977--9859998988895
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCEEECCCCCEEEECCCCEEEEE
Q ss_conf 122223354000489989766420111058769999076117999
Q 001628 768 LLKETSIRGFVYLTPKPNSLSNTLMCSSWDGELIMVNGNQEAFFI 812 (1042)
Q Consensus 768 ~i~~~~l~~~~~~~~~~~~~~~~~i~~s~~G~~~~~~~~~~~~~~ 812 (1042)
.+..+..+. .....+.|+++|..+++.+.+....+
T Consensus 1210 ~~~~~~~~~----------~~i~~~~~s~dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1210 SSQTFYTNG----------TNLKKIHVSPDFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp CCCCCCCSS----------CCCCCCEECSSSCCEEEECTTCCEEE
T ss_pred EEEEEECCC----------CCCCEEEECCCCCEEEEECCCCEEEE
T ss_conf 004640047----------75327999789877999668817999
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=393.13 Aligned_cols=556 Identities=13% Similarity=0.127 Sum_probs=305.0
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC---
Q ss_conf 5762799994899899999949919999258-876999951897553899996499899999489979999738996---
Q 001628 38 PSGCNKFAYDPLQKILAAATKDGRIKLYGRH-NNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR--- 113 (1042)
Q Consensus 38 ~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~--- 113 (1042)
.+.+.+++|+|++++||++. ++.|++|+.. +.....+.+|. ..|++++|+|++++|++++.|++|+|||+.++.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE
T ss_conf 68236976679999799679-9979994578724273765899-865999999999689999489978994898984156
Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 55664149974899991799899999079----83999980687420244222024644458654699877999974579
Q 001628 114 LSHVHVCKEEITSFTIMQHSNYMLLGDTA----GKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTA 189 (1042)
Q Consensus 114 ~~~~~~h~~~It~i~~sp~~~~L~sg~~d----G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~~~p~~ 189 (1042)
...+..|.+.|.+++|+|++++|++++.+ +.|++|+..... .. ...|...|.++.|+|
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~-------~~---------l~gh~~~v~~v~f~p-- 157 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-------GN---------LTGQARAMNSVDFKP-- 157 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-------BC---------CCCCSSCEEEEEECS--
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCC-------CE---------ECCCCCCCEEEEECC--
T ss_conf 676225578448999899999799998997736699996389976-------32---------547889836999889--
Q ss_pred CCC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 999-5999987992999965698268982776210122358755589999569988999960782999967886543433
Q 001628 190 ESK-RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTE 268 (1042)
Q Consensus 190 d~~-~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG~I~iWd~~~~~~~~~~ 268 (1042)
++. ++++++.|+.|++||..+.+.... +.+|...|.+++|+ |++..|++++.||.|++|+..++......
T Consensus 158 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 158 SRPFRIISGSDDNTVAIFEGPPFKFKST--------FGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp SSSCEEEEEETTSCEEEEETTTBEEEEE--------ECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred CCCEEEEEEECCCEEEEEECCCCEEEEE--------ECCCCCCEEEEEEC-CCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 9982999992898099997999757665--------20025716999997-99998999989991999889998286651
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECC--CCCEEE
Q ss_conf 578634532123678777776504899988079770799936434677750899960455663148874289--997345
Q 001628 269 ECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPL--SEPCID 346 (1042)
Q Consensus 269 ~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~ 346 (1042)
.... +.......++..+.|. +.+..+ +.++.+. ++.+.+.........+.... ......
T Consensus 229 ~~~~---------~~~~~h~~~V~~v~~s---pdg~~l-~s~s~D~------~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 229 EDDS---------LKNVAHSGSVFGLTWS---PDGTKI-ASASADK------TIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp BCTT---------SSSCSSSSCEEEEEEC---TTSSEE-EEEETTS------EEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCCC---------CCCCCCCCCEEEEEEC---CCCCEE-EEEECCC------EEEEEECCCCCEEEEECCCCCCCCEEEE
T ss_conf 3664---------3235667878999997---999999-9990898------0999968887013440478876640689
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 99824899999999518999821881698304210022114899999999831110167778631299984058522233
Q 001628 347 MEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS 426 (1042)
Q Consensus 347 ~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~ 426 (1042)
+.. ....++....+|.+++|+..... .......|...|++++|++++.
T Consensus 290 ~~~----------~~~~l~s~s~d~~i~~~~~~~~~-----------------~~~~~~gh~~~v~~l~~spdg~----- 337 (611)
T 1nr0_A 290 IIW----------TKQALVSISANGFINFVNPELGS-----------------IDQVRYGHNKAITALSSSADGK----- 337 (611)
T ss_dssp EEE----------CSSCEEEEETTCCEEEEETTTTE-----------------EEEEECCCSSCEEEEEECTTSS-----
T ss_pred EEE----------CCCEEEEEECCCCEEEEECCCCC-----------------CCEEECCCCCCEEEEEEECCCC-----
T ss_conf 997----------38879999589968999688997-----------------4469837888889999918999-----
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 23678764511999877776778997667887619999807982999949898325552012233346777997858999
Q 001628 427 ADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALY 506 (1042)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~Vt~i~ 506 (1042)
++++++.|++|++||+..+.....+ . ..|...|.+++
T Consensus 338 ----------------------------------~l~s~s~D~~v~~Wd~~~~~~~~~~-------~--~~h~~~v~~~~ 374 (611)
T 1nr0_A 338 ----------------------------------TLFSADAEGHINSWDISTGISNRVF-------P--DVHATMITGIK 374 (611)
T ss_dssp ----------------------------------EEEEEETTSCEEEEETTTCCEEECS-------S--CSCSSCEEEEE
T ss_pred ----------------------------------EEEEEECCCCEEEEECCCCCEEEEC-------C--CCCCCEEEEEE
T ss_conf ----------------------------------8999958984999978879256321-------6--67765078999
Q ss_pred EECCCCEEEEEECCCEEEEEEECCCCCCCCC--------CEEEECCCCCC--------------CCCEEEEEEEEECCCC
Q ss_conf 8279989999906321999996268863345--------44663045557--------------6421224897404987
Q 001628 507 YDGTSRVLVSGDQSGMVRIFKLKYEPHAIEN--------SFLSFTGSKKG--------------NSHIIHSVKVMKINGS 564 (1042)
Q Consensus 507 fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~--------~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~ 564 (1042)
|++++ .+++++.|+.+++|+.......... ....+.-...| ..+. .....+...
T Consensus 375 ~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~---~~~~~~~~~ 450 (611)
T 1nr0_A 375 TTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYN 450 (611)
T ss_dssp ECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSC
T ss_pred ECCCC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCC---EEEEECCCC
T ss_conf 87899-69999848966895468854356521200148997079980799699999676399984894---346406889
Q ss_pred EEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 58999806984999993588099995348839994132333588849999995003788851899983785399997799
Q 001628 565 IISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDN 644 (1042)
Q Consensus 565 V~~l~~spdg~~La~gs~dg~V~iwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~~t 644 (1042)
+.+++|+||+++||+|+.|+.|++||+.+..+..... ..|...|++++|+| ++.+|++++.|++|++|+..+
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~--~~h~~~v~~v~fsp------dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSN------NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEECT------TSSEEEEEETTSCEEEEEGGG
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC--CCCCCCEEEEEECC------CCCEEEEECCCCCEEEEECCC
T ss_conf 5499992899899996899739999945992224101--57788607999989------999899994899899988577
Q ss_pred -CCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEECCCCCCCCC
Q ss_conf -96456420288999971499993299767668641000147999888888888709999954-8239992585334651
Q 001628 645 -GNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVK 722 (1042)
Q Consensus 645 -g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~-~~i~i~~~~~~~qg~~ 722 (1042)
++.+..... ......+.++.+. +++.+++.++. ..+++|++... .
T Consensus 523 ~~~~~~~~~~-~~H~~~V~~v~fs----------------------------pdg~~lasgs~D~~v~lW~~~~~----~ 569 (611)
T 1nr0_A 523 NFELAHTNSW-TFHTAKVACVSWS----------------------------PDNVRLATGSLDNSVIVWNMNKP----S 569 (611)
T ss_dssp TTEESCCCCC-CCCSSCEEEEEEC----------------------------TTSSEEEEEETTSCEEEEETTCT----T
T ss_pred CCCEEEEEEE-EECCCCEEEEEEC----------------------------CCCCEEEEEECCCCEEEEECCCC----C
T ss_conf 8722321026-4046642589989----------------------------98997999979972999978875----5
Q ss_pred EEEEEEE-EC-CCCEEEEEEEEECCCEEEEEEEECCEEEEECCC
Q ss_conf 3578964-04-768135898775694599999724849997278
Q 001628 723 KVLYKKK-FH-SSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 764 (1042)
Q Consensus 723 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp 764 (1042)
+...... -+ .... ..+..++++. |+....||.|++|++|
T Consensus 570 ~~~~~~~~~h~~~~v--~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIKGAHAMSSV--NSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEETTSSTTSCE--EEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCHHHCCCCCCCE--EEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 563264446765671--1899858997-9995288778998444
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=393.01 Aligned_cols=412 Identities=11% Similarity=0.147 Sum_probs=242.6
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC-EEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 9951897553899996499899999489979999738996-556641499748999917998999990798399998068
Q 001628 74 LLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKR-LSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQ 152 (1042)
Q Consensus 74 ~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~-~~~~~~h~~~It~i~~sp~~~~L~sg~~dG~I~vwd~~~ 152 (1042)
.+..| ...|.+++|+|++++|++++.|++|++||+.++. +..+.+|.+.|++++|+|++++|++|+.||.|++||+.+
T Consensus 610 ~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 610 VVRPH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEECC-CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 87166-66489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 74202442220246444586546998779999745799995999987992999965698268982776210122358755
Q 001628 153 ESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQV 232 (1042)
Q Consensus 153 ~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~~~p~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I 232 (1042)
+.. ... ...|...|.++.|+|..+...+++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 689 ~~~--~~~------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~h~~~v 746 (1249)
T 3sfz_A 689 GKL--VHT------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM--------FGHTNSV 746 (1249)
T ss_dssp CCE--EEE------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE--------CCCSSCE
T ss_pred CCE--EEE------------ECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEE--------CCCCCCE
T ss_conf 936--899------------958997379999840899659999808970999989996342201--------2777978
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCC
Q ss_conf 58999956998899996078299996788654343357863453212367877777650489998807977079993643
Q 001628 233 TSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGAS 312 (1042)
Q Consensus 233 ~~i~~~~~~g~~lvsg~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~ 312 (1042)
.+++|+ |++..+++++.||.|++|++..+................. ........+..+.
T Consensus 747 ~~~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~----------------- 805 (1249)
T 3sfz_A 747 NHCRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED---PPEDVEVIVKCCS----------------- 805 (1249)
T ss_dssp EEEEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----------CCCCCBCCCC-----------------
T ss_pred EEEEEE-CCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCC---CCCCCCCEEEEEE-----------------
T ss_conf 899992-5999899997898599996888865530202321024677---6445650179999-----------------
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCC
Q ss_conf 46777508999604556631488742899973459982489999999951899982188169830421002211489999
Q 001628 313 DFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRS 392 (1042)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~ 392 (1042)
+..+... ++...++.+.+|+.......
T Consensus 806 --------------------------------------------~s~dg~~-l~~~~~~~v~~~d~~~~~~~-------- 832 (1249)
T 3sfz_A 806 --------------------------------------------WSADGDK-IIVAAKNKVLLFDIHTSGLL-------- 832 (1249)
T ss_dssp --------------------------------------------BCTTSSE-EEEEETTEEEEEETTTCCEE--------
T ss_pred --------------------------------------------ECCCCCE-EEEECCCCEEEEEECCCCCE--------
T ss_conf --------------------------------------------9789988-99975895999995689723--------
Q ss_pred CCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 99998311101677786312999840585222332367876451199987777677899766788761999980798299
Q 001628 393 PPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAIN 472 (1042)
Q Consensus 393 ~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~Ir 472 (1042)
......|...++++.|++++. ++++++.||.|+
T Consensus 833 --------~~~~~~~~~~v~~~~~sp~~~---------------------------------------~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 833 --------AEIHTGHHSTIQYCDFSPYDH---------------------------------------LAVIALSQYCVE 865 (1249)
T ss_dssp --------EEEECSSSSCCCEEEECSSTT---------------------------------------EEEEECSSSCEE
T ss_pred --------EEECCCCCCCEEEEEECCCCC---------------------------------------EEEEEECCCEEE
T ss_conf --------577478777607999827888---------------------------------------899994798699
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEE-----EC----
Q ss_conf 994989832555201223334677799785899982799899999063219999962688633454466-----30----
Q 001628 473 FWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLS-----FT---- 543 (1042)
Q Consensus 473 iWd~~~~~~~~l~~l~~~~~~~~~~~~~~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~~~~~-----~~---- 543 (1042)
+||...+.....+ .+|...|++++|+|++..|++++.||.|++|++............. +.
T Consensus 866 vwd~~~~~~~~~~----------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1249)
T 3sfz_A 866 LWNIDSRLKVADC----------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET 935 (1249)
T ss_dssp EEETTTTEEEEEE----------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred EEECCCCCEEEEC----------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 9986789565322----------787665689999899998999958972898874665201021133103689759986
Q ss_pred -----CCCCCCC--CEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEE
Q ss_conf -----4555764--212248974049875899980698499999358809999534883999413233358884999999
Q 001628 544 -----GSKKGNS--HIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFE 616 (1042)
Q Consensus 544 -----~~~~g~~--~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~iwD~~~~~~~~~~~~~~~~~~~V~sl~fs 616 (1042)
+...+.. ..............+++++|+|++.++++|+.+|.|++||+.+...... ...|...|++++|+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~---~~~h~~~v~~l~~s 1012 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS---GVGHKKAVRHIQFT 1012 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE---CCCCSSCCCCEEEC
T ss_pred EEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEE---CCCCCCCEEEEEEC
T ss_conf 899813776248984476508972567278999958997799986999889997578723443---03677716899998
Q ss_pred EEECCCCCCEEEEEEECCCEEEEEECCCCCEE
Q ss_conf 50037888518999837853999977999645
Q 001628 617 TCSLQGFEKNFLVIATKDSSVLVLDSDNGNML 648 (1042)
Q Consensus 617 ~~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~i 648 (1042)
| ++.+|++++.||.|++||..+++.+
T Consensus 1013 ~------dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1013 A------DGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp S------SSSCEEEECSSSBEEEEETTTTEEE
T ss_pred C------CCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 9------9998999869987999987999668
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=391.31 Aligned_cols=520 Identities=14% Similarity=0.204 Sum_probs=334.6
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 16457627999948998999999499199992588769999518975538999964998999994899799997389965
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRHNNTQALLESSEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRL 114 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~g~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~ 114 (1042)
.||.+.|++++|+|++++||+++.|+.|++|+..++....+..+. .+|.+++|+|++++|++++.|+.+++|+......
T Consensus 54 ~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~ 132 (577)
T 2ymu_A 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 132 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCEEEEECCCCCEEECCCCCCEE
T ss_conf 689899899999899999999969897999989997899997899-9889999989999899980798335202355200
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
Q ss_conf 56641499748999917998999990798399998068742024422202464445865469987799997457999959
Q 001628 115 SHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRI 194 (1042)
Q Consensus 115 ~~~~~h~~~It~i~~sp~~~~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~~~p~~d~~~l 194 (1042)
.....+...|.++.++|+...++.+..++.+++|+...... .. ...+...|.++.++| ++.++
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~~v~~~~~~~--~~~~l 195 (577)
T 2ymu_A 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QT-------------LTGHSSSVWGVAFSP--DGQTI 195 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE--EE-------------EECCSSCEEEEEECT--TSSCE
T ss_pred EECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEE--EE-------------CCCCCCCEEEEEECC--CCCEE
T ss_conf 11047777435554203776320025553100000000000--00-------------268776356654169--97789
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99987992999965698268982776210122358755589999569988999960782999967886543433578634
Q 001628 195 LIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLKTEECGTQI 274 (1042)
Q Consensus 195 ls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG~I~iWd~~~~~~~~~~~~~~~~ 274 (1042)
++++.|+.|++||... +. ......|...|.+++|+ |++..+++++.||.|++|+.... ......++
T Consensus 196 ~~~~~d~~v~~w~~~~-~~--------~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~i~~w~~~~~--~~~~~~~~-- 261 (577)
T 2ymu_A 196 ASASDDKTVKLWNRNG-QL--------LQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQ--LLQTLTGH-- 261 (577)
T ss_dssp EEEETTSEEEEECTTS-CE--------EEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSC--EEEEECCC--
T ss_pred EEECCCCEEEEEECCC-CE--------EEEEECCCCCEEEEEEC-CCCCEEEEEECCCEEEEEECCCC--EEEEEECC--
T ss_conf 9985999899994999-68--------99994688988999997-99999999918998999959997--99998068--
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 53212367877777650489998807977079993643467775089996045566314887428999734599824899
Q 001628 275 TPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSS 354 (1042)
Q Consensus 275 ~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (1042)
..++..+.+.
T Consensus 262 -------------~~~v~~v~~~--------------------------------------------------------- 271 (577)
T 2ymu_A 262 -------------SSSVNGVAFR--------------------------------------------------------- 271 (577)
T ss_dssp -------------SSCEEEEEEC---------------------------------------------------------
T ss_pred -------------CCCEEEEEEC---------------------------------------------------------
T ss_conf -------------8987999996---------------------------------------------------------
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 99999951899982188169830421002211489999999983111016777863129998405852223323678764
Q 001628 355 DPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSSADEDYSLL 434 (1042)
Q Consensus 355 ~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~~~~~~~~~ 434 (1042)
.+...++..+.++.+++|+... .....+..|...|++++|++++..+++++.+..+++
T Consensus 272 ----~d~~~l~~~~~d~~i~~w~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 272 ----PDGQTIASASDDKTVKLWNRNG------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp ----TTSSEEEEEETTSCEEEEETTS------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----CCCCEEEEEECCCEEEEEECCC------------------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf ----8999999995999799994899------------------589997068897699999999999999969995999
Q ss_pred HHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 51199987777677899766--7887619999807982999949898325552012233346777997858999827998
Q 001628 435 AKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGIPLTALYYDGTSR 512 (1042)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~~Vt~i~fsp~~~ 512 (1042)
|+...........+...+.+ +++++..+++++.||.|++||.....+ ..+ ..|...|++++|+|++.
T Consensus 330 w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~---~~~--------~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QTL--------TGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE---EEE--------ECCSSCEEEEEECTTSS
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEE---EEE--------CCCCCCEEEEEECCCCC
T ss_conf 9699972578747889779999989999999996999899990899789---985--------27889748999989999
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 99999063219999962688633454466304555764212248974049875899980698499999358809999534
Q 001628 513 VLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTE 592 (1042)
Q Consensus 513 ~Lasg~~dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~iwD~~ 592 (1042)
+|++++.|+.|++|+...... ..+..|...|++++|+|++++|++++.|+.|++||..
T Consensus 399 ~l~~~~~d~~v~~~~~~~~~~----------------------~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~ 456 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRNGQLL----------------------QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456 (577)
T ss_dssp CEEEEETTSEEEEECTTCCEE----------------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCEEEEEECCCCEE----------------------EEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 999994999899996999789----------------------8962889975799998999999999399989999799
Q ss_pred CCEEE-EECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 88399-94132333588849999995003788851899983785399997799964564202889999714999932997
Q 001628 593 GPTVL-YQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIHPKKPSRALFMQILNGQD 671 (1042)
Q Consensus 593 ~~~~~-~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~i~~~~~~~~~~~~~~~~~~~~~~~ 671 (1042)
+..+. +.. |...|++++|+| ++.+|++++.|+.|++||. +|+.+..+..+ ...+.++.+..
T Consensus 457 ~~~~~~~~~-----~~~~v~~~~~sp------d~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~--- 518 (577)
T 2ymu_A 457 GQLLQTLTG-----HSSSVRGVAFSP------DGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSP--- 518 (577)
T ss_dssp SCEEEEEEC-----CSSCEEEEEECT------TSCEEEEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECT---
T ss_pred CCEEEEECC-----CCCCEEEEEECC------CCCEEEEEECCCEEEEECC-CCCEEEEEECC---CCCEEEEEECC---
T ss_conf 988999727-----899778999969------9999999919897999939-99789998679---99989999918---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCEEEE
Q ss_conf 67668641000147999888888888709999954-82399925853346513578964047681358987756945999
Q 001628 672 GLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVKKVLYKKKFHSSSCCWASTFYSGSDVGLM 750 (1042)
Q Consensus 672 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~-~~i~i~~~~~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 750 (1042)
++.+++++++ ..+++|+... +.+....-+..... .+..++++..|+
T Consensus 519 -------------------------dg~~l~s~~~dg~v~lwd~~~------~~~~~~~~h~~~v~--~~~fs~dg~~l~ 565 (577)
T 2ymu_A 519 -------------------------DGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVW--GVAFSPDGQTIA 565 (577)
T ss_dssp -------------------------TSSCEEEEETTSEEEEECTTS------CEEEEEECCSSCEE--EEEECTTSSCEE
T ss_pred -------------------------CCCEEEEEECCCEEEEEECCC------CEEEEECCCCCCEE--EEEECCCCCEEE
T ss_conf -------------------------999999998969999996999------78989718888878--999968999999
Q ss_pred EEEECCEEEEEC
Q ss_conf 997248499972
Q 001628 751 LLFTSGKFEIRS 762 (1042)
Q Consensus 751 ~~~~~g~I~i~s 762 (1042)
.+..||.|++|+
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEECCCEEEEEC
T ss_conf 990899999969
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=390.79 Aligned_cols=537 Identities=12% Similarity=0.113 Sum_probs=360.5
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C--CEEEEEECCCCCCEEEEEEECCCCEEEEEECCC----CEEEE
Q ss_conf 1645762799994899899999949919999258-8--769999518975538999964998999994899----79999
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-N--NTQALLESSEAVSTKFLQFLENQGILLNVTSTN----LIEVW 107 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g--~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~dg----~I~vW 107 (1042)
.||...|++++|+|++++||+|+.||.|+||+.. + .....+..+. .+|.+++|+|++++|++++.+. .|++|
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCC-CCEEEEEECCCCCEEEEEECCCCCEEEEEEE
T ss_conf 589986599999999968999948997899489898415667622557-8448999899999799998997736699996
Q ss_pred ECCCCCEEEEEECCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 738996556641499748999917998-9999907983999980687420244222024644458654699877999974
Q 001628 108 DIDKKRLSHVHVCKEEITSFTIMQHSN-YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSGDPAVINILPQ 186 (1042)
Q Consensus 108 d~~~~~~~~~~~h~~~It~i~~sp~~~-~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~V~~i~~~ 186 (1042)
|.. .....+.+|...|++++|+|++. .|++|+.|++|++|+...... . .. ...|...|.+++|+
T Consensus 135 d~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~---~~---------l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 135 DTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--K---ST---------FGEHTKFVHSVRYN 199 (611)
T ss_dssp TTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--E---EE---------ECCCSSCEEEEEEC
T ss_pred ECC-CCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEE--E---EE---------ECCCCCCEEEEEEC
T ss_conf 389-976325478898369998899982999992898099997999757--6---65---------20025716999997
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 57999959999879929999656982689827762101223587555899995699889999607829999678865434
Q 001628 187 PTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNGEILIWGVPSILNLK 266 (1042)
Q Consensus 187 p~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG~I~iWd~~~~~~~~ 266 (1042)
| ++.++++++.|+.|++||+.+++.+..+.... ....+|...|.+++|+ |++..|++++.|+.|++||+.++....
T Consensus 200 p--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 200 P--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp T--TSSEEEEEETTSCEEEEETTTCCEEEECBCTT-SSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred C--CCCEEEEEECCCCEEEEECCCCCEEEEECCCC-CCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 9--99989999899919998899982866513664-3235667878999997-999999999089809999688870134
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEE
Q ss_conf 33578634532123678777776504899988079770799936434677750899960455663148874289997345
Q 001628 267 TEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCID 346 (1042)
Q Consensus 267 ~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1042)
....... .......+.| ....++..+.. + .+...+.... ............+..
T Consensus 276 ~~~~~~~-------------~~~~~~~~~~-----~~~~l~s~s~d--~-----~i~~~~~~~~-~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 276 TIPVGTR-------------IEDQQLGIIW-----TKQALVSISAN--G-----FINFVNPELG-SIDQVRYGHNKAITA 329 (611)
T ss_dssp EEECCSS-------------GGGCEEEEEE-----CSSCEEEEETT--C-----CEEEEETTTT-EEEEEECCCSSCEEE
T ss_pred EECCCCC-------------CCCEEEEEEE-----CCCEEEEEECC--C-----CEEEEECCCC-CCCEEECCCCCCEEE
T ss_conf 4047887-------------6640689997-----38879999589--9-----6899968899-744698378888899
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 99824899999999518999821881698304210022114899999999831110167778631299984058522233
Q 001628 347 MEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSITAMKLITGNSFILSS 426 (1042)
Q Consensus 347 ~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt~~~~~~~~~~i~s~ 426 (1042)
+.+.| +...|+....+|.+++||....+... .....|...++++.+++++ .++++
T Consensus 330 l~~sp--------dg~~l~s~s~D~~v~~Wd~~~~~~~~----------------~~~~~h~~~v~~~~~s~~~-~l~s~ 384 (611)
T 1nr0_A 330 LSSSA--------DGKTLFSADAEGHINSWDISTGISNR----------------VFPDVHATMITGIKTTSKG-DLFTV 384 (611)
T ss_dssp EEECT--------TSSEEEEEETTSCEEEEETTTCCEEE----------------CSSCSCSSCEEEEEECTTS-CEEEE
T ss_pred EEEEC--------CCCEEEEEECCCCEEEEECCCCCEEE----------------ECCCCCCCEEEEEEECCCC-CEEEE
T ss_conf 99918--------99989999589849999788792563----------------2166776507899987899-69999
Q ss_pred CHHHHHHHHHCCCCCCCCCC----CCCCC--CCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 23678764511999877776----77899--7667887619999807982999949898325552012233346777997
Q 001628 427 ADEDYSLLAKSVPPLLDFET----KLKDG--SQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSEKDFSLSGI 500 (1042)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~~~~~~~~~ 500 (1042)
+.+..+++|........... ..... ..++++++..++++ .++.+++|+.. .+ ..+ .+..
T Consensus 385 s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~--~~---~~~---------~~~~ 449 (611)
T 1nr0_A 385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KL---TEV---------PISY 449 (611)
T ss_dssp ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EE---EEE---------ECSS
T ss_pred ECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEE-ECCEEEEEECC--CE---EEE---------ECCC
T ss_conf 848966895468854356521200148997079980799699999-67639998489--43---464---------0688
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEE
Q ss_conf 85899982799899999063219999962688633454466304555764212248974049875899980698499999
Q 001628 501 PLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMNRNSQHLAVG 580 (1042)
Q Consensus 501 ~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~spdg~~La~g 580 (1042)
.+.+++|+|++++||+|+.||.|++|++....... .....|...|++++|+||+++||++
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~--------------------~~~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE--------------------VKTIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE--------------------EEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEE--------------------EECCCCCCCEEEEEECCCCCEEEEE
T ss_conf 95499992899899996899739999945992224--------------------1015778860799998999989999
Q ss_pred ECCCCEEEEECCC-CEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCE-E-EEEECCCCC
Q ss_conf 3588099995348-839994132333588849999995003788851899983785399997799964-5-642028899
Q 001628 581 SDQGYVYLLDTEG-PTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNM-L-STNLIHPKK 657 (1042)
Q Consensus 581 s~dg~V~iwD~~~-~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~-i-~~~~~~~~~ 657 (1042)
+.|+.|++||+.+ ..++ .......|...|.+++|+| ++.+|++++.|++|++|+..++.. + ... ....
T Consensus 510 s~d~~v~~w~~~~~~~~~-~~~~~~~H~~~V~~v~fsp------dg~~lasgs~D~~v~lW~~~~~~~~~~~~~--~~h~ 580 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELA-HTNSWTFHTAKVACVSWSP------DNVRLATGSLDNSVIVWNMNKPSDHPIIIK--GAHA 580 (611)
T ss_dssp ETTSCEEEEEGGGTTEES-CCCCCCCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTCTTSCCEEET--TSST
T ss_pred CCCCCEEEEECCCCCCEE-EEEEEEECCCCEEEEEECC------CCCEEEEEECCCCEEEEECCCCCCCCCHHH--CCCC
T ss_conf 489989998857787223-2102640466425899899------899799997997299997887555632644--4676
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCEEEEECC
Q ss_conf 997149999329976766864100014799988888888870999995-4823999258
Q 001628 658 PSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCS-EKAACAYSLS 715 (1042)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~-~~~i~i~~~~ 715 (1042)
...+.++.+.+ ++. ++.++ +..+++|+++
T Consensus 581 ~~~v~~v~fs~----------------------------d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 581 MSSVNSVIWLN----------------------------ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEEEEE----------------------------TTE-EEEEETTSCEEEEECC
T ss_pred CCCEEEEEECC----------------------------CCE-EEEECCCCCEEEEECC
T ss_conf 56711899858----------------------------997-9995288778998444
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=359.42 Aligned_cols=566 Identities=12% Similarity=0.088 Sum_probs=374.0
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C----CEEEEEECCCCCC-EEEEEEEC--CCCEEEEEECCCCEEE
Q ss_conf 1645762799994899899999949919999258-8----7699995189755-38999964--9989999948997999
Q 001628 35 YGFPSGCNKFAYDPLQKILAAATKDGRIKLYGRH-N----NTQALLESSEAVS-TKFLQFLE--NQGILLNVTSTNLIEV 106 (1042)
Q Consensus 35 ~G~~~~v~~la~sp~~~~LA~gs~dg~I~iw~~~-g----~~~~~~~~~~~~~-v~~l~fs~--~~~~Lvs~s~dg~I~v 106 (1042)
.++.+.|++++|+|++++||+++ ++.|++|+.. + .....+..|. .. |.+++|+| ++++|++++.|+.|++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCC-CCEEEEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 77658536899889999799935-98499997778877651431880578-84499999796789988999648987999
Q ss_pred EECCCC--------C-EEEEEECCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 973899--------6-55664149974899991799899999079----8399998068742024422202464445865
Q 001628 107 WDIDKK--------R-LSHVHVCKEEITSFTIMQHSNYMLLGDTA----GKISVLKLDQESSQIVKMKYIIPLSASHGNE 173 (1042)
Q Consensus 107 Wd~~~~--------~-~~~~~~h~~~It~i~~sp~~~~L~sg~~d----G~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~ 173 (1042)
||+.++ . ...+..|...|++++|+|++++|++++.+ +.|++|+.... . .. .
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~----~---~~---------~ 156 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS----L---GE---------V 156 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE----E---EE---------C
T ss_pred EECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEECCCC----C---EE---------E
T ss_conf 768887655445542000111256637999990799989993168777557999978981----0---31---------3
Q ss_pred CCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCC---CEEEEEEECCC-CCEEEEE
Q ss_conf 4699877999974579999-59999879929999656982689827762101223587---55589999569-9889999
Q 001628 174 VSGDPAVINILPQPTAESK-RILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETK---QVTSACWACPI-GSKVAVG 248 (1042)
Q Consensus 174 ~~~~~~V~~i~~~p~~d~~-~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~---~I~~i~~~~~~-g~~lvsg 248 (1042)
..|...|.++.|+| ++. .+++++.|+.|++||+.+++.+..+ ..|.. .|.+++|+ |+ +..++++
T Consensus 157 ~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--------~~~~~~~~~v~~~~~~-~~~~~~l~~~ 225 (615)
T 1pgu_A 157 SGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASD--------RTHHKQGSFVRDVEFS-PDSGEFVITV 225 (615)
T ss_dssp CSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEE--------CSSSCTTCCEEEEEEC-STTCCEEEEE
T ss_pred ECCCCCEEEEEECC--CCCCEEEEEECCCCEEEEECCCCCEEEEE--------CCCCCCCCEEEEEEEC-CCCCCEEEEE
T ss_conf 06774388999887--89968999957995999969996101320--------2567777428999978-9778889998
Q ss_pred ECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf 60782999967886543433578634532123678777776504899988079770799936434677750899960455
Q 001628 249 YSNGEILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQ 328 (1042)
Q Consensus 249 ~~dG~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~ 328 (1042)
+.||.|++|++.++......... ......++..+.|. ++..++.++.+. .+.+++..
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~-----~~~~l~~~~~d~------~i~~wd~~ 282 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDD------------QEPVQGGIFALSWL-----DSQKFATVGADA------TIRVWDVT 282 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBT------------TBCCCSCEEEEEES-----SSSEEEEEETTS------EEEEEETT
T ss_pred ECCCEEEEEECCCCCEEEEECCC------------CCCCCCCEEEEEEC-----CCCEEEEECCCC------CEEEEECC
T ss_conf 68980899989999785895254------------44567755899981-----899799984899------48999788
Q ss_pred CCCEEEEEEECC---CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCC
Q ss_conf 663148874289---99734599824899999999518999821881698304210022114899999999831110167
Q 001628 329 TESRTTKLALPL---SEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMP 405 (1042)
Q Consensus 329 ~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p 405 (1042)
..........+. ...+..+... ....+++.+.+|.+++||....+ ....+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~g~i~~~d~~~~~-----------------~~~~~~ 336 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT---------GNGRIISLSLDGTLNFYELGHDE-----------------VLKTIS 336 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE---------ETTEEEEEETTSCEEEEETTEEE-----------------EEEEEC
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEC---------CCCEEEEEECCCCEEEEECCCCC-----------------EEEEEE
T ss_conf 8927878847877545714699918---------99769999789978999888992-----------------889994
Q ss_pred CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 7786312999840585222332367876451199987777677899766--78876199998079829999498983255
Q 001628 406 FLDSSITAMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQS--HSKVKNLFITGHSDGAINFWDVSCPLFLL 483 (1042)
Q Consensus 406 ~h~~~vt~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~tg~~Dg~IriWd~~~~~~~~ 483 (1042)
.|...|+++.| ++ +++++.+..+.+|+.. .+. ..+...+.+ + +++..+++++.|+.|++|++.....
T Consensus 337 ~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~--~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-- 405 (615)
T 1pgu_A 337 GHNKGITALTV-NP---LISGSYDGRIMEWSSS--SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF-- 405 (615)
T ss_dssp CCSSCEEEEET-TT---TEEEETTSCEEETTTT--EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC--
T ss_pred CCCCCEEEEEE-CC---CEEECCCCEEEEEECH--HHC--CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCC--
T ss_conf 77787899995-67---4898799959998752--415--755685179997-8986799995899799988666763--
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCC
Q ss_conf 52012233346777997858999827998999990632199999626886334544663045557642122489740498
Q 001628 484 ILSLKQQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKING 563 (1042)
Q Consensus 484 l~~l~~~~~~~~~~~~~~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 563 (1042)
...+.+++|+|++.+++++ .++.+.+|+........ ...+..
T Consensus 406 ---------------~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~~~~ 447 (615)
T 1pgu_A 406 ---------------GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIK----------------------SVRLNS 447 (615)
T ss_dssp ---------------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEE----------------------EEECSS
T ss_pred ---------------CCCCEEEEECCCCCEEEEE-CCCCEEEEECCCCCEEE----------------------ECCCCC
T ss_conf ---------------6784699982898789996-79826999446786655----------------------515678
Q ss_pred CEEEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEEC
Q ss_conf 7589998069849999935-880999953488399941323335888499999950037888518999837853999977
Q 001628 564 SIISLNMNRNSQHLAVGSD-QGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDS 642 (1042)
Q Consensus 564 ~V~~l~~spdg~~La~gs~-dg~V~iwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~ 642 (1042)
.+++++|+ +.+|++++. ||.|++||+.+..... .....|...|++++|+| ++.+|++++.||.|++||.
T Consensus 448 ~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~------~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 448 PGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP------SETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp CEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT------TSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCC--CCCCCCCCCEEEEEECC------CCCEEEECCCCCEEEEEEC
T ss_conf 72077883--88899965689869999888854353--33677657507999989------9998998179985998657
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEECCCCCCCC
Q ss_conf 9996456420288999971499993299767668641000147999888888888709999954-823999258533465
Q 001628 643 DNGNMLSTNLIHPKKPSRALFMQILNGQDGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGV 721 (1042)
Q Consensus 643 ~tg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~-~~i~i~~~~~~~qg~ 721 (1042)
.+++.+..... .....+.++.+....... .+...++.++++++. ..+++|++...
T Consensus 518 ~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~------------------~~~~~~~~~l~~~~~dg~i~iw~~~~~---- 573 (615)
T 1pgu_A 518 QSREVKTSRWA--FRTSKINAISWKPAEKGA------------------NEEEIEEDLVATGSLDTNIFIYSVKRP---- 573 (615)
T ss_dssp TTTEEEECCSC--CCSSCEEEEEECCCC------------------------CCSCCEEEEEETTSCEEEEESSCT----
T ss_pred CCCCCEEEEEC--CCCCCEEEEEECCCCCCC------------------CCCCCCCCEEEEECCCCCEEEEECCCC----
T ss_conf 77762467604--788714699976832345------------------332468888999817971999977888----
Q ss_pred CEEEEEEEECCCCEEEEEEEEECCCEEEEEEEECCEEEEECCC
Q ss_conf 1357896404768135898775694599999724849997278
Q 001628 722 KKVLYKKKFHSSSCCWASTFYSGSDVGLMLLFTSGKFEIRSLP 764 (1042)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~g~I~i~slp 764 (1042)
.+.+....-+..... .+..++++. |+....||.|++|++.
T Consensus 574 ~~~~~~~~~h~~~v~--~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 574 MKIIKALNAHKDGVN--NLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TCCEEETTSSTTCEE--EEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CEECHHHHCCCCCEE--EEEECCCCC-EEEECCCCEEEEEEEE
T ss_conf 540311335943058--999738997-2884599639999601
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=358.26 Aligned_cols=508 Identities=11% Similarity=0.086 Sum_probs=343.0
Q ss_pred EECCCCC-EEEEEECC--CCCEEEEEECCCEEEEEECC-C--------CEEEEEECCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 2164576-27999948--99899999949919999258-8--------76999951897553899996499899999489
Q 001628 34 HYGFPSG-CNKFAYDP--LQKILAAATKDGRIKLYGRH-N--------NTQALLESSEAVSTKFLQFLENQGILLNVTST 101 (1042)
Q Consensus 34 ~~G~~~~-v~~la~sp--~~~~LA~gs~dg~I~iw~~~-g--------~~~~~~~~~~~~~v~~l~fs~~~~~Lvs~s~d 101 (1042)
..||... |++++|+| ++++||+|+.||.|++|+.. + .....+..+ ..+|.++.|+|++++|++++.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECC
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCC-CCCEEEEEEECCCCEEEEECCC
T ss_conf 805788449999979678998899964898799976888765544554200011125-6637999990799989993168
Q ss_pred ----CCEEEEECCCCCEEEEEECCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf ----979999738996556641499748999917998-999990798399998068742024422202464445865469
Q 001628 102 ----NLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSN-YMLLGDTAGKISVLKLDQESSQIVKMKYIIPLSASHGNEVSG 176 (1042)
Q Consensus 102 ----g~I~vWd~~~~~~~~~~~h~~~It~i~~sp~~~-~L~sg~~dG~I~vwd~~~~~~~~~~~~~~ip~~~~~~~~~~~ 176 (1042)
+.|.+|| ....+..+..|...|++++|+|++. ++++++.||.|++|++..... . ..+ ..|
T Consensus 138 ~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~---~~~---------~~~ 202 (615)
T 1pgu_A 138 RDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--S---ASD---------RTH 202 (615)
T ss_dssp SSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--E---EEE---------CSS
T ss_pred CCCCCEEEEEE-CCCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCE--E---EEE---------CCC
T ss_conf 77755799997-89810313067743889998878996899995799599996999610--1---320---------256
Q ss_pred CC---CEEEEEECCCCC-CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 98---779999745799-99599998799299996569826898277621012235875558999956998899996078
Q 001628 177 DP---AVINILPQPTAE-SKRILIIFRDGLISLWDIRESKSIFSMGGNVLQSVYHETKQVTSACWACPIGSKVAVGYSNG 252 (1042)
Q Consensus 177 ~~---~V~~i~~~p~~d-~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~~~~~~~~~~I~~i~~~~~~g~~lvsg~~dG 252 (1042)
.. .|.++.|+| + +.++++++.||.|++||+.+++.+..+. .....|...|.+++|+ ++..+++++.||
T Consensus 203 ~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~v~~~~~~--~~~~l~~~~~d~ 274 (615)
T 1pgu_A 203 HKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIE----DDQEPVQGGIFALSWL--DSQKFATVGADA 274 (615)
T ss_dssp SCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECC----BTTBCCCSCEEEEEES--SSSEEEEEETTS
T ss_pred CCCCCEEEEEEECC--CCCCEEEEEECCCEEEEEECCCCCEEEEEC----CCCCCCCCCEEEEEEC--CCCEEEEECCCC
T ss_conf 77774289999789--778889998689808999899997858952----5444567755899981--899799984899
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 29999678865434335786345321236787777765048999880797707999364346777508999604556631
Q 001628 253 EILIWGVPSILNLKTEECGTQITPICKLNLGYKLDKIPISSLKWVYADGKASRLYIMGASDFVSMNLLQIVLLNEQTESR 332 (1042)
Q Consensus 253 ~I~iWd~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~pi~~l~~~~~~~~~~~i~~~gg~~~~~~~~~~v~~~~~~~~~~ 332 (1042)
.|++|++..+........ ........+..+.|. .+..++ .++.+. .+...+... .+
T Consensus 275 ~i~~wd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~l~-~~~~~g------~i~~~d~~~-~~ 330 (615)
T 1pgu_A 275 TIRVWDVTTSKCVQKWTL------------DKQQLGNQQVGVVAT----GNGRII-SLSLDG------TLNFYELGH-DE 330 (615)
T ss_dssp EEEEEETTTTEEEEEEEC------------CTTCGGGCEEEEEEE----ETTEEE-EEETTS------CEEEEETTE-EE
T ss_pred CEEEEECCCCCEEEEECC------------CCCCCCCCEEEEEEC----CCCEEE-EEECCC------CEEEEECCC-CC
T ss_conf 489997888927878847------------877545714699918----997699-997899------789998889-92
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 48874289997345998248999999995189998218816983042100221148999999998311101677786312
Q 001628 333 TTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQSRSPPSAPKEVMLKMPFLDSSIT 412 (1042)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~~~~~~l~~~~~~~~p~h~~~vt 412 (1042)
...........+..+.+ +. ++..+.+|.+.+|+.. .+. ..|...|+
T Consensus 331 ~~~~~~~~~~~v~~~~~-~~-----------l~~~~~dg~i~~w~~~---------------------~~~-~~~~~~v~ 376 (615)
T 1pgu_A 331 VLKTISGHNKGITALTV-NP-----------LISGSYDGRIMEWSSS---------------------SMH-QDHSNLIV 376 (615)
T ss_dssp EEEEECCCSSCEEEEET-TT-----------TEEEETTSCEEETTTT---------------------EEE-CCCCSCEE
T ss_pred EEEEEECCCCCEEEEEE-CC-----------CEEECCCCEEEEEECH---------------------HHC-CCCCCCEE
T ss_conf 88999477787899995-67-----------4898799959998752---------------------415-75568517
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC
Q ss_conf 99984058522233236787645119998777767789976678876199998079829999498983255520122333
Q 001628 413 AMKLITGNSFILSSADEDYSLLAKSVPPLLDFETKLKDGSQSHSKVKNLFITGHSDGAINFWDVSCPLFLLILSLKQQSE 492 (1042)
Q Consensus 413 ~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tg~~Dg~IriWd~~~~~~~~l~~l~~~~~ 492 (1042)
++.+ +++..+++++.+..+.+|+........ .....++++++.+++++ .++.+++|+...+.....+
T Consensus 377 ~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------- 443 (615)
T 1pgu_A 377 SLDN-SKAQEYSSISWDDTLKVNGITKHEFGS----QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV------- 443 (615)
T ss_dssp EEEC-CSTTCCEEEETTTEEEETTEEEEECSS----CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE-------
T ss_pred EEEE-CCCCEEEEEECCCCEEEEECCCCCCCC----CCEEEEECCCCCEEEEE-CCCCEEEEECCCCCEEEEC-------
T ss_conf 9997-898679999589979998866676367----84699982898789996-7982699944678665551-------
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEE
Q ss_conf 467779978589998279989999906-3219999962688633454466304555764212248974049875899980
Q 001628 493 KDFSLSGIPLTALYYDGTSRVLVSGDQ-SGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHSVKVMKINGSIISLNMN 571 (1042)
Q Consensus 493 ~~~~~~~~~Vt~i~fsp~~~~Lasg~~-dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~V~~l~~s 571 (1042)
.+...+++++|+ +.+|++++. ||.|++|++....... ..+ ..| ...|++++|+
T Consensus 444 ----~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~---------~~~----------~~~v~~~~~s 497 (615)
T 1pgu_A 444 ----RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DLK---------TPL----------RAKPSYISIS 497 (615)
T ss_dssp ----ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-ECS---------SCC----------SSCEEEEEEC
T ss_pred ----CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCC-CCC---------CCC----------CCCEEEEEEC
T ss_conf ----567872077883--88899965689869999888854353-336---------776----------5750799998
Q ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEE----CCCCCCEEEEEEECCCEEEEEECCCC-C
Q ss_conf 698499999358809999534883999413233358884999999500----37888518999837853999977999-6
Q 001628 572 RNSQHLAVGSDQGYVYLLDTEGPTVLYQKHIASDISSGIVSLQFETCS----LQGFEKNFLVIATKDSSVLVLDSDNG-N 646 (1042)
Q Consensus 572 pdg~~La~gs~dg~V~iwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~----~~~~~~~~L~sgs~Dg~V~vwd~~tg-~ 646 (1042)
|++++|++|+.||.|++||+.....+... ...|...|++++|+|.. ..+.++.+|++++.||.|++||..++ +
T Consensus 498 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 575 (615)
T 1pgu_A 498 PSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 575 (615)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred CCCCEEEECCCCCEEEEEECCCCCCEEEE--ECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCE
T ss_conf 99998998179985998657777624676--0478871469997683234533246888899981797199997788854
Q ss_pred EEEEEECCCCCCCCCEEEEEE
Q ss_conf 456420288999971499993
Q 001628 647 MLSTNLIHPKKPSRALFMQIL 667 (1042)
Q Consensus 647 ~i~~~~~~~~~~~~~~~~~~~ 667 (1042)
.+..... ....+.++.+.
T Consensus 576 ~~~~~~~---h~~~v~~l~~s 593 (615)
T 1pgu_A 576 IIKALNA---HKDGVNNLLWE 593 (615)
T ss_dssp CEEETTS---STTCEEEEEEE
T ss_pred ECHHHHC---CCCCEEEEEEC
T ss_conf 0311335---94305899973
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=338.62 Aligned_cols=614 Identities=11% Similarity=0.062 Sum_probs=356.3
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCE
Q ss_conf 89755389999649989999948997999973899655664149974899991799899999079839999806874202
Q 001628 78 SEAVSTKFLQFLENQGILLNVTSTNLIEVWDIDKKRLSHVHVCKEEITSFTIMQHSNYMLLGDTAGKISVLKLDQESSQI 157 (1042)
Q Consensus 78 ~~~~~v~~l~fs~~~~~Lvs~s~dg~I~vWd~~~~~~~~~~~h~~~It~i~~sp~~~~L~sg~~dG~I~vwd~~~~~~~~ 157 (1042)
.+...|.+++|+|++.+|++++.|++|++|+..+........|...|++++|+| +++|++++.|+.|++||+.++..
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-- 91 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-- 91 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE--
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCCE--
T ss_conf 889984899997999989999297989999689947999868999779999908-98899998959599998999968--
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC---CCCCCCCCCEEE
Q ss_conf 44222024644458654699877999974579999599998799299996569826898277621---012235875558
Q 001628 158 VKMKYIIPLSASHGNEVSGDPAVINILPQPTAESKRILIIFRDGLISLWDIRESKSIFSMGGNVL---QSVYHETKQVTS 234 (1042)
Q Consensus 158 ~~~~~~ip~~~~~~~~~~~~~~V~~i~~~p~~d~~~lls~~~dg~I~iWd~~~~~~~~~~~g~~~---~~~~~~~~~I~~ 234 (1042)
.. .+ .+...|+++.|+| ++.++++++.||.|++||+.+++.......... ....+|...|.+
T Consensus 92 ~~---~~----------~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 92 LT---TV----------FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp EE---EE----------ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred EE---EE----------CCCCCEEEEEECC--CCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf 99---97----------4899879999879--999899994999299999999962650304321000254457897389
Q ss_pred EEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC--CCCCCCC-CCCCCCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 9999569-988999960782999967886543433578634--5321236-78777776504899988079770799936
Q 001628 235 ACWACPI-GSKVAVGYSNGEILIWGVPSILNLKTEECGTQI--TPICKLN-LGYKLDKIPISSLKWVYADGKASRLYIMG 310 (1042)
Q Consensus 235 i~~~~~~-g~~lvsg~~dG~I~iWd~~~~~~~~~~~~~~~~--~p~~~l~-~~~~~~~~pi~~l~~~~~~~~~~~i~~~g 310 (1042)
++|+ |+ +..+++++.||.| +||+..+....... .+.. .+..... ........++..+.|.
T Consensus 157 l~~s-p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs------------- 220 (902)
T 2oaj_A 157 IQWN-PRDIGTVLISYEYVTL-TYSLVENEIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYH------------- 220 (902)
T ss_dssp EEEE-TTEEEEEEEECSSCEE-EEETTTTEEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-------------
T ss_pred EEEC-CCCCCEEEEEECCCCE-EEECCCCCEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-------------
T ss_conf 9976-6999989999189849-99877896579983-355776777654433234567776899985-------------
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCC
Q ss_conf 43467775089996045566314887428999734599824899999999518999821881698304210022114899
Q 001628 311 ASDFVSMNLLQIVLLNEQTESRTTKLALPLSEPCIDMEIISSSSDPNKPKQDSFLLLGKSGHFYAFDDCQIERYLLQYQS 390 (1042)
Q Consensus 311 g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~vl~~~G~i~~~d~~~~e~~~~~~~~ 390 (1042)
.+...++....+|.|++||....+.+....-.
T Consensus 221 ------------------------------------------------pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 221 ------------------------------------------------PNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp ------------------------------------------------TTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred ------------------------------------------------CCCCEEEEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf ------------------------------------------------99999999989993999987899688888501
Q ss_pred --CCCCCCCCCCEECCCCCCCCEEEEEEEEC----CCC-CCCCCHHH-----HHHHHHCC--------------------
Q ss_conf --99999983111016777863129998405----852-22332367-----87645119--------------------
Q 001628 391 --RSPPSAPKEVMLKMPFLDSSITAMKLITG----NSF-ILSSADED-----YSLLAKSV-------------------- 438 (1042)
Q Consensus 391 --~~~~~l~~~~~~~~p~h~~~vt~~~~~~~----~~~-i~s~~~~~-----~~~~~~~~-------------------- 438 (1042)
....... ......-.|...|++++|++. +.. +++++.+. .+..|...
T Consensus 253 ~~~~~~~~~-~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~ 331 (902)
T 2oaj_A 253 ETEINVPQP-DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331 (902)
T ss_dssp CSCTTSCCT-TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred CCCCCCCCC-CCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC
T ss_conf 234578777-6788885556774579997349998878999688777788852899954789875554255654664174
Q ss_pred CCCCCCCCCCCCCCCC--C----------CCCCCEEEEEECCCCEEEEECCCCCEEEE-----EECC-------------
Q ss_conf 9987777677899766--7----------88761999980798299994989832555-----2012-------------
Q 001628 439 PPLLDFETKLKDGSQS--H----------SKVKNLFITGHSDGAINFWDVSCPLFLLI-----LSLK------------- 488 (1042)
Q Consensus 439 ~~~~~~~~~~~~~~~~--~----------~~~~~~l~tg~~Dg~IriWd~~~~~~~~l-----~~l~------------- 488 (1042)
.........+.+.+.. + ..+...+++++.||.|++|++..+..... ..+.
T Consensus 332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~ 411 (902)
T 2oaj_A 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS 411 (902)
T ss_dssp SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred CCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 52278741899954799997788988677878506999917984899978999855655568985223589724899997
Q ss_pred -------------CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCEEEE
Q ss_conf -------------2333467779978589998279989999906321999996268863345446630455576421224
Q 001628 489 -------------QQSEKDFSLSGIPLTALYYDGTSRVLVSGDQSGMVRIFKLKYEPHAIENSFLSFTGSKKGNSHIIHS 555 (1042)
Q Consensus 489 -------------~~~~~~~~~~~~~Vt~i~fsp~~~~Lasg~~dG~V~iw~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 555 (1042)
......+.+|...+.+++|+|++++|++|+.||+|++|++..........+. +. ...
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~-~~-----l~~---- 481 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE-VN-----LSR---- 481 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE-EE-----HHH----
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEE-EE-----CHH----
T ss_conf 49999988886046999754578577875333666758999658983899978776456773677-50-----154----
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEE--------------E-----------------------
Q ss_conf 897404987589998069849999935880999953488399--------------9-----------------------
Q 001628 556 VKVMKINGSIISLNMNRNSQHLAVGSDQGYVYLLDTEGPTVL--------------Y----------------------- 598 (1042)
Q Consensus 556 ~~~~~~~~~V~~l~~spdg~~La~gs~dg~V~iwD~~~~~~~--------------~----------------------- 598 (1042)
.....|...|++++|+||+++||+|+.||+|+|||+.+.... +
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred HCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 13778887646999638999699994585799999248655575455778665113455134679654322423689887
Q ss_pred -----ECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC--C-CCCCCCEEEEEECCC
Q ss_conf -----41323335888499999950037888518999837853999977999645642028--8-999971499993299
Q 001628 599 -----QKHIASDISSGIVSLQFETCSLQGFEKNFLVIATKDSSVLVLDSDNGNMLSTNLIH--P-KKPSRALFMQILNGQ 670 (1042)
Q Consensus 599 -----~~~~~~~~~~~V~sl~fs~~~~~~~~~~~L~sgs~Dg~V~vwd~~tg~~i~~~~~~--~-~~~~~~~~~~~~~~~ 670 (1042)
......+|...|++++|+| ++ +|++|+.|++|++||+.++.++....+. . .....+.++.+--
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSp------dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~-- 632 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSN------IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVI-- 632 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECB------TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEE--
T ss_pred CCCCCEEEEEECCCCCEEEEEECC------CC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEE--
T ss_conf 776014699986888677999648------76-899995897699998889839997024672646666139999999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEECCCCCCCCCEEEEEEEE---CCCCEEEEEEEEE---
Q ss_conf 767668641000147999888888888709999954-823999258533465135789640---4768135898775---
Q 001628 671 DGLARGANLSNVAGMNKGSPKENAVPKQWFVLLCSE-KAACAYSLSHAVQGVKKVLYKKKF---HSSSCCWASTFYS--- 743 (1042)
Q Consensus 671 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ll~~~~-~~i~i~~~~~~~qg~~~~~~~~~~---~~~~~~~~~~~~~--- 743 (1042)
.... . ..++..+++..+. ..+++|++.....|.....+.... ...+......+..
T Consensus 633 ------------~~~~-~-----Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 694 (902)
T 2oaj_A 633 ------------MEYG-D-----DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETK 694 (902)
T ss_dssp ------------EECT-T-----SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTC
T ss_pred ------------EECC-C-----CCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCC
T ss_conf ------------8417-8-----987633899995687399999955899868999667244078896479985866879
Q ss_pred ----------------CCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCE---E------ECCCC
Q ss_conf ----------------6945999997248499972788311222233540004899897664201---1------10587
Q 001628 744 ----------------GSDVGLMLLFTSGKFEIRSLPELSLLKETSIRGFVYLTPKPNSLSNTLM---C------SSWDG 798 (1042)
Q Consensus 744 ----------------~~~~~lv~~~~~g~I~i~slp~l~~i~~~~l~~~~~~~~~~~~~~~~~i---~------~s~~G 798 (1042)
....++++++.+..|++|+++..+.+....-+. ....++ . ++.+|
T Consensus 695 ~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~~~----------~~~~~v~~~~~~~~~~~~~~~ 764 (902)
T 2oaj_A 695 SSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFKYP----------LAATGLSYISTVEKNNDRKNL 764 (902)
T ss_dssp CBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECSSC----------EEEEEEEEEEEECSSSCEEEE
T ss_pred CCCCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCC----------EEEEEEEEEEECCCCCCCCCC
T ss_conf 7366887897255778877739999935405999675335123672562----------014477788701355544673
Q ss_pred CEEEECCCCEEEEEEEECCCCCC
Q ss_conf 69999076117999851035632
Q 001628 799 ELIMVNGNQEAFFISALRQRDFF 821 (1042)
Q Consensus 799 ~~~~~~~~~~~~~~s~l~~~~~~ 821 (1042)
..++....++-+++..+.+-.++
T Consensus 765 ~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 765 TVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp EEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEECCCCEEEEECCCHHHH
T ss_conf 69999927995999978564778
Done!