Query 001630
Match_columns 1042
No_of_seqs 155 out of 207
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 1E-121 2E-126 1062.4 31.8 870 44-1041 45-972 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 1.3E-32 2.9E-37 273.7 8.3 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.1 7E-10 1.5E-14 124.4 13.7 186 20-207 1-191 (291)
4 PF10474 DUF2451: Protein of u 97.8 1.5E-05 3.3E-10 86.3 4.2 142 880-1025 74-220 (234)
5 KOG2115 Vacuolar sorting prote 97.8 0.00033 7.2E-09 85.4 14.7 154 53-206 247-400 (951)
6 PF15469 Sec5: Exocyst complex 97.4 0.0018 3.8E-08 67.8 13.1 141 63-204 2-148 (182)
7 PF06248 Zw10: Centromere/kine 97.3 0.0025 5.5E-08 78.9 14.0 171 42-212 7-182 (593)
8 PF04124 Dor1: Dor1-like famil 97.0 0.011 2.3E-07 68.1 14.7 165 48-216 13-177 (338)
9 PF04100 Vps53_N: Vps53-like, 96.9 0.0045 9.9E-08 72.2 11.2 179 30-209 2-185 (383)
10 KOG2176 Exocyst complex, subun 95.9 0.057 1.2E-06 66.1 12.2 166 39-208 38-206 (800)
11 PF04437 RINT1_TIP1: RINT-1 / 95.8 0.011 2.4E-07 71.6 5.5 296 637-998 139-451 (494)
12 PF06148 COG2: COG (conserved 95.1 0.017 3.6E-07 57.4 3.4 126 26-151 7-132 (133)
13 KOG2069 Golgi transport comple 93.9 0.74 1.6E-05 55.0 13.4 164 45-210 34-197 (581)
14 PF10392 COG5: Golgi transport 93.6 0.15 3.2E-06 50.6 6.3 111 26-136 2-127 (132)
15 KOG2180 Late Golgi protein sor 93.6 0.5 1.1E-05 57.4 11.4 188 18-205 5-197 (793)
16 PF04091 Sec15: Exocyst comple 81.2 0.56 1.2E-05 53.4 0.6 141 881-1022 162-307 (311)
17 KOG2346 Uncharacterized conser 75.4 2.3 4.9E-05 49.9 3.1 177 29-211 30-209 (636)
18 KOG0412 Golgi transport comple 73.2 52 0.0011 40.9 13.7 161 47-207 36-203 (773)
19 PF09763 Sec3_C: Exocyst compl 72.0 46 0.00099 42.5 14.0 150 59-208 8-179 (701)
20 PF08700 Vps51: Vps51/Vps67; 69.1 6.7 0.00014 35.5 4.2 62 29-90 3-67 (87)
21 KOG2307 Low density lipoprotei 59.6 20 0.00044 43.0 6.6 115 26-141 27-149 (705)
22 PF07899 Frigida: Frigida-like 59.5 18 0.0004 40.8 6.2 81 113-199 146-226 (290)
23 KOG0994 Extracellular matrix g 55.3 87 0.0019 40.9 11.2 59 70-128 1573-1631(1758)
24 PRK11637 AmiB activator; Provi 53.2 2.1E+02 0.0046 34.1 14.2 147 47-199 45-192 (428)
25 KOG2273 Membrane coat complex 47.3 1.7E+02 0.0036 35.8 12.3 162 49-214 281-446 (503)
26 PF07553 Lipoprotein_Ltp: Host 44.3 42 0.00092 27.3 4.3 39 981-1019 6-45 (48)
27 cd07614 BAR_Endophilin_A2 The 42.8 4E+02 0.0086 29.0 12.8 73 48-120 87-161 (223)
28 PF10191 COG7: Golgi complex c 41.3 2.6E+02 0.0056 36.2 13.0 176 27-208 5-195 (766)
29 PF02601 Exonuc_VII_L: Exonucl 41.2 1E+02 0.0022 35.2 8.6 76 49-124 147-228 (319)
30 PF09325 Vps5: Vps5 C terminal 40.7 4.8E+02 0.01 27.9 13.5 45 51-96 33-77 (236)
31 cd07623 BAR_SNX1_2 The Bin/Amp 40.6 5E+02 0.011 28.0 13.6 118 50-173 20-141 (224)
32 KOG1961 Vacuolar sorting prote 38.8 6.3E+02 0.014 31.3 14.4 121 89-209 83-216 (683)
33 PF04129 Vps52: Vps52 / Sac2 f 38.7 3.2E+02 0.0069 33.5 12.8 120 90-209 23-154 (508)
34 PF12854 PPR_1: PPR repeat 37.3 34 0.00075 25.3 2.7 25 315-340 7-31 (34)
35 cd07613 BAR_Endophilin_A1 The 36.9 4.1E+02 0.0088 29.0 11.7 118 48-167 87-212 (223)
36 PF08317 Spc7: Spc7 kinetochor 36.8 4.2E+02 0.009 30.5 12.7 133 57-191 142-287 (325)
37 KOG2033 Low density lipoprotei 36.1 98 0.0021 38.4 7.4 103 63-168 38-140 (863)
38 cd07615 BAR_Endophilin_A3 The 34.7 4.6E+02 0.01 28.5 11.7 105 48-152 87-199 (223)
39 COG4477 EzrA Negative regulato 33.2 1.4E+02 0.003 36.3 7.9 150 6-171 42-206 (570)
40 TIGR03185 DNA_S_dndD DNA sulfu 32.9 1.5E+02 0.0032 37.5 9.0 32 181-212 491-522 (650)
41 cd07592 BAR_Endophilin_A The B 32.8 4.5E+02 0.0097 28.6 11.3 138 62-207 66-219 (223)
42 PF06160 EzrA: Septation ring 30.6 78 0.0017 39.3 5.8 167 6-182 39-216 (560)
43 PF05615 THOC7: Tho complex su 30.1 4E+02 0.0086 26.4 9.8 72 44-115 41-115 (139)
44 KOG2148 Exocyst protein Sec3 [ 29.8 3.6E+02 0.0078 33.6 10.6 147 59-206 196-360 (867)
45 cd07610 FCH_F-BAR The Extended 29.5 6.4E+02 0.014 25.9 12.1 35 152-186 123-157 (191)
46 cd07617 BAR_Endophilin_B2 The 26.4 6.8E+02 0.015 27.2 11.1 38 74-111 118-156 (220)
47 PRK11637 AmiB activator; Provi 25.2 1.2E+03 0.026 27.7 15.5 54 74-127 82-135 (428)
48 KOG3501 Molecular chaperone Pr 25.2 2.6E+02 0.0056 26.5 6.6 78 82-159 4-94 (114)
49 PHA02562 46 endonuclease subun 24.8 5.8E+02 0.013 31.3 12.1 22 179-200 301-322 (562)
50 PTZ00464 SNF-7-like protein; P 24.8 3.9E+02 0.0084 28.8 9.0 71 131-208 77-147 (211)
51 cd07600 BAR_Gvp36 The Bin/Amph 23.7 6.4E+02 0.014 27.8 10.6 128 59-192 77-224 (242)
52 PRK10869 recombination and rep 23.5 2.2E+02 0.0047 35.4 7.8 33 87-119 253-285 (553)
53 cd07616 BAR_Endophilin_B1 The 23.4 4.7E+02 0.01 28.6 9.4 129 59-192 68-211 (229)
54 PF09325 Vps5: Vps5 C terminal 23.3 4.6E+02 0.01 28.0 9.7 79 47-125 80-158 (236)
55 PRK04778 septation ring format 23.1 1.9E+02 0.0042 35.9 7.4 94 67-170 112-206 (569)
56 PRK14140 heat shock protein Gr 23.0 2.2E+02 0.0049 30.1 6.7 54 127-183 89-143 (191)
57 PRK04778 septation ring format 23.0 7.4E+02 0.016 30.8 12.4 107 74-183 369-475 (569)
58 TIGR02606 antidote_CC2985 puta 22.7 82 0.0018 27.6 2.9 28 148-175 14-41 (69)
59 cd00632 Prefoldin_beta Prefold 22.4 5.1E+02 0.011 24.3 8.5 81 118-199 22-103 (105)
60 PLN03094 Substrate binding sub 22.3 1.3E+02 0.0027 35.3 5.1 72 99-170 290-368 (370)
61 PF04108 APG17: Autophagy prot 22.1 7.9E+02 0.017 29.2 11.9 141 54-210 215-361 (412)
62 KOG0612 Rho-associated, coiled 22.0 9E+02 0.019 32.6 12.7 123 84-208 528-651 (1317)
63 COG5491 VPS24 Conserved protei 21.7 5.8E+02 0.013 27.4 9.4 79 74-152 24-105 (204)
64 PF09693 Phage_XkdX: Phage unc 20.6 1.2E+02 0.0026 23.6 3.0 36 982-1019 1-36 (40)
65 PF06008 Laminin_I: Laminin Do 20.5 1.2E+03 0.025 25.8 12.9 141 48-198 51-196 (264)
66 COG1463 Ttg2C ABC-type transpo 20.4 7.8E+02 0.017 28.6 11.2 69 59-127 161-229 (359)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-121 Score=1062.40 Aligned_cols=870 Identities=22% Similarity=0.300 Sum_probs=651.3
Q ss_pred cCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHH
Q 001630 44 SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (1042)
Q Consensus 44 s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~ 123 (1042)
-+.|+.++++|++.|++.+.+|+++|+.|+|+|+++|.+|++|++.|+.||++|.++|++|.+||++|+|+|++|++||.
T Consensus 45 ~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~ 124 (982)
T KOG3691|consen 45 TEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWA 124 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHH
Q 001630 124 RSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLED 203 (1042)
Q Consensus 124 ~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEE 203 (1042)
++.+|++||++|++||++++||+|||++|++|+|++|+++|.+|+.++|++ |.+|++|+|||++|+.+++.|+++|+||
T Consensus 125 ~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~-L~~VEgLs~l~~ele~~~~~L~~~L~eE 203 (982)
T KOG3691|consen 125 ENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP-LDGVEGLSDLRSELEGLLSHLEDILIEE 203 (982)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHhhcccCcch-hhhhcccccCCCCcceeeeeeeccCCcccccccccccCCccCcCccCCCCccCCCCCCCCCCCcccc
Q 001630 204 LHAHLYNRGEYS-SAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAH 282 (1042)
Q Consensus 204 Lh~hLYlKs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (1042)
||+|+|+|+..- ..+ ..+ .+ |++.+ ++ ++ .++.++.
T Consensus 204 Lv~ily~ks~~~~l~~--~~~-~~----------------~~~s~--l~-----------~~-----------~~~~in~ 240 (982)
T KOG3691|consen 204 LVSILYLKSVAYPLVS--YCR-TN----------------PLSSR--LN-----------DF-----------LYNNINT 240 (982)
T ss_pred HHHHHHhchhhhhHHh--hhc-CC----------------chhhH--HH-----------HH-----------hhcccCc
Confidence 999999997520 000 000 01 11100 00 00 0000111
Q ss_pred cccccccccccc-----ccCC----Chh--HHHHHHhhc-CCcchHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhHHH
Q 001630 283 DETSLDGLSIGW-----LANS----TPD--EFVEAIRKS-DAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEI 350 (1042)
Q Consensus 283 d~~~~~~~~~~f-----l~~~----~~~--~~~ed~~~n-~~~~sf~yi~~lvesL~~LgkL~~Al~~i~qRl~~EL~~i 350 (1042)
+....++.+.+. ..+. +.+ ...+++.-. |++.+-.+...+++.++++.|+|.++.+|..|+.+|++.+
T Consensus 241 t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~il~k~~~~~~k~p~~~n~i~~~~~~el~ni 320 (982)
T KOG3691|consen 241 TTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRRILEKFTTVDSKSPAIVNKISERINVELVNI 320 (982)
T ss_pred cccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 100000000000 0000 000 001111111 4555666788999999999999999999999999999999
Q ss_pred HHHhHHHhHHhhhccccccccccccccccceeeccccccccCchhhhccCcccccceeeeccCcccccCcchhhHHHHHH
Q 001630 351 ITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKEL 430 (1042)
Q Consensus 351 V~~ti~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~l~el 430 (1042)
|.++...+ +.++. +.+-| . + . +....+|.+|
T Consensus 321 v~kSt~~i-------~~~g~------~~~e~---------a--t---------~----------------~tn~f~L~el 351 (982)
T KOG3691|consen 321 VSKSTYDI-------SLSGE------TDREH---------A--T---------F----------------DTNHFMLLEL 351 (982)
T ss_pred hhccchhh-------hcccc------chhhh---------h--h---------c----------------cCCHHHHHHH
Confidence 98744332 11111 11100 0 0 0 1113369999
Q ss_pred HHHHHHHHHHHhccceeehhhhhcccccccCCCCCceeeecccCCCCCcccccceeeeeeehhhHHHHHHHHHHHHhhCc
Q 001630 431 LDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATP 510 (1042)
Q Consensus 431 l~~lf~kf~~v~q~Hrvv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~y~~~~vW~~iQ~Ei~~LL~~YL~~~~ 510 (1042)
||.||.||.+++++|++++..... .+.-+| .. +....|++.++|.++|+||+.||.+||...+
T Consensus 352 l~~if~kf~a~aq~Ha~~~~~s~~----~~vv~P-----------~~--sq~d~f~~~~~W~k~qs~ielllsE~i~~nn 414 (982)
T KOG3691|consen 352 LEEIFTKFEAAAQKHASSLHKSLQ----NDVVSP-----------KV--SQKDTFDFTDFWQKAQSEIELLLSEYIDNNN 414 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----ccccCC-----------cc--cCCCcccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999773321 111111 11 1122599999999999999999999998755
Q ss_pred cccch-hhHHHH----------HHhhccCCCCcccCCCCCCeEEEEEeecceeeccCcchhhHhhccccCC-cccccccc
Q 001630 511 EAASA-DAAVQT----------ARLASKAPSKEKRDGSEDGLTFAFRFTDATISIPNQGADLIRQGWSRRG-TNVLQEGY 578 (1042)
Q Consensus 511 ~~~s~-~~~~~~----------~~~~~~~~~~~k~~~~~~~~~~~Frf~d~~~s~~~~~~~~~~~~~~~~~-~~~~~~g~ 578 (1042)
..... ..+... ..++...+.. ++ +..|.++|+..+...... ++.|.++... ....+.|.
T Consensus 415 ~~~~~~e~s~~~sp~s~~r~~~~~f~~e~~~~-----~~-s~~f~~~~~~~a~~k~~~---l~~qrs~~~~~~~el~~g~ 485 (982)
T KOG3691|consen 415 NSVKGTEMSINNSPASNERKKLFDFTNEIAVE-----PN-SNLFYHRINELANEKAPE---LILQRSNASVSTIELFSGS 485 (982)
T ss_pred CccccccccccCCCCCcchhHHHHhhccccCC-----CC-cccchhHHHHHhhhccch---hhhhhhhhhhccchhccCc
Confidence 43322 111100 0111111111 11 234444544443332111 1111111111 11122222
Q ss_pred c--ccccccCCceeeeeecccccccchHHHhhhcccccccccCcchHHHHHHhhhhcccccchhhhhhHHHHhhcCCccc
Q 001630 579 G--TAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAF 656 (1042)
Q Consensus 579 ~--~~~~l~~~sifn~~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~~daf 656 (1042)
. -...+|+||+|||++||+|++.|++.++.++|.+ ...+|.++.|||+||+++||||+...+...|+.++++.|||
T Consensus 486 s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~--p~q~c~l~~Fm~~yi~~sFl~qv~~~m~~~ie~~~k~~~a~ 563 (982)
T KOG3691|consen 486 SKEIVELICKPSVFNIKVILPPLLRFIEETESILKNP--PIQPCSLRNFMDEYIKGSFLPQVYKEMSSHIEGIMKDVDAF 563 (982)
T ss_pred chhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCC--CCCCchHHHHHHHHHHHHhHHHHHHHHHHHhHhhcccCcce
Confidence 2 2356999999999999999999999999999976 35589999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCcccchhhHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH------hh
Q 001630 657 RPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSYMEAVL------EK 730 (1042)
Q Consensus 657 ~~~~~~~~~~~~~~~~~rPI~k~t~~~~~~~~~l~~ml~t~p~Y~~~~~~li~~~L~~y~~~c~~~y~~lv~------~~ 730 (1042)
+....|... +..+-.+|++|.++.+..-+.++...+++++.|.+-|+.++|..+..|++-|.+.|++.+. .+
T Consensus 564 ~l~~s~~~i--~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~~~l~m~~~~~~~Y~~~c~~a~~g~~~~~~~~~~~ 641 (982)
T KOG3691|consen 564 RLHRSWKII--PIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSDYLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRK 641 (982)
T ss_pred eeecCHhhh--hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh
Confidence 999988652 2234567777776556556677888999999999999999999999999999999999886 35
Q ss_pred hhchhccccchhhhhccCCCCCCCCC-CCCCC--C---C--CCCCCCCcchhhhHHHhhcc-ccccccccccccCCcEEE
Q 001630 731 QSYMLIGRHDIDKLLRLEPASASLPN-GQLDS--V---S--SVNDAETPGVESELRELFLS-LRPIRQENLIHDENKLIL 801 (1042)
Q Consensus 731 ~s~~~~~~~d~~~lm~~~~~~~~l~~-~~~~~--~---~--~~~~~~l~e~E~~l~~~~~~-~~~i~~~dli~d~~~l~~ 801 (1042)
++++|+.++|++++++..|+|....- ++... . + .+.++...|.|+.++++.+. +..++..+|+.|...++.
T Consensus 642 is~aWl~Dddisr~l~klpNw~~~s~~~~~~~~r~E~e~~lq~~~r~~kE~e~li~nLgt~~q~~~s~~~il~~m~~lK~ 721 (982)
T KOG3691|consen 642 ISVAWLKDDDISRQLKKLPNWKNPSLEGQNELCREEEESFLQAGDRNIKESELLISNLGTDSQLSISVSDILNDMSDLKQ 721 (982)
T ss_pred hhHHHhccchhHHHHHhccCCcccccccccchhhhhcchHhHhhhcccchHhhhhcccchhhhcccCHHHHHHHHHHHHH
Confidence 88999999999999999999976421 22111 0 0 01111223344444443321 456899999999999999
Q ss_pred eeccchhhHHhHHHHHHHhhhhhhccccccccCC-CCCCCC------CCCCCcchhhhHHHHhHhhhhhHhhhhhhhhhh
Q 001630 802 LASLSDSLEYVADSIERLGRATLRESNLVEESRK-PHHNRS------SSAPSRDLASFADEYRKLAIDCLKVLRVEMQLE 874 (1042)
Q Consensus 802 La~L~~SL~Wla~~i~~L~~~~~~~~~~~~~~~~-~~~~r~------~~~~~~~f~~l~~~f~~La~~~Ll~LrlEvR~~ 874 (1042)
+|.+++||+||+.++....+.....+ ...+.+. +++.-+ +.-....|+.++++|++||++||+.||+|||+|
T Consensus 722 ~a~m~ES~~w~a~r~rs~~~~l~~~~-ll~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~~~fq~la~~cLLlLhlEVRv~ 800 (982)
T KOG3691|consen 722 LANMHESLEWFADRARSGFDFLPIDN-LLGNNPALMKGYLTDLIELYDDFYKSAYEELADSFQRLAFDCLLLLHLEVRVQ 800 (982)
T ss_pred HHhhhhhHHHHHHHHHhhccccchhh-hhcCCccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766555432221 0000011 111111 111234688999999999999999999999999
Q ss_pred hhhhhccccc-ccc--ccccCCCCCCceeEeecccccccccccchhhhhhhccceecchhhcccccchHHhhcccccchh
Q 001630 875 TIFHLQEMTS-RDY--LEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLF 951 (1042)
Q Consensus 875 ~iy~L~~~~~-~~y--~~~~~~~EpD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~ 951 (1042)
|||||+++.. ++| +-..+++||||.|+.||++|.++|++|+.+|+|+|++|||+|||||++.+||+++++|++||++
T Consensus 801 Cfh~l~~~s~~~n~~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~yIFeGL~hL~s~~LI~~a~~i~~ln~~ 880 (982)
T KOG3691|consen 801 CFHYLNPLSKLRNTSIVNRDVSGEPDPSVVALNKDLSTTEEKLKACLNEWKRRYIFEGLGHLVSSILISGAQYIERLNEG 880 (982)
T ss_pred HHhhcchhhccCCceeecccccCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999997543 443 3334499999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHhhCCCCCHHHHHHHhhhhHHHHHhhcCcHHHHHHHHhhcccccChHhhhhhhccccCC-CCC--
Q 001630 952 GVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG-REI-- 1028 (1042)
Q Consensus 952 Gvkkm~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~~~~-r~~-- 1028 (1042)
|||||||||+||||+|+||+++++ +||++||+||+||+++|++|++.+.+++.+||+.||++|++|.|++ .|+
T Consensus 881 ~ikkMcRNv~~lQQ~Lsnit~~re----vdld~ar~fy~ll~nt~deile~v~d~~~qfse~e~~qllrls~rS~~g~~k 956 (982)
T KOG3691|consen 881 GIKKMCRNVSALQQILSNITESRE----VDLDKARRFYELLQNTADEILEHVIDARKQFSEPELKQLLRLSYRSLKGDAK 956 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc----cccHHHHHHHHHHhcCHHHHHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999998773 3999999999999999999999999999999999999999999985 444
Q ss_pred ---CcchhhhhHhhhc
Q 001630 1029 ---PSDALDRVSEILS 1041 (1042)
Q Consensus 1029 ---~~~~~~~~~~i~~ 1041 (1042)
..++.||+++|+|
T Consensus 957 ~~~~~e~~qkl~n~i~ 972 (982)
T KOG3691|consen 957 RNGRDELLQKLSNIIG 972 (982)
T ss_pred CCchHHHHHHHHHHHh
Confidence 4788999999984
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=99.97 E-value=1.3e-32 Score=273.65 Aligned_cols=137 Identities=40% Similarity=0.604 Sum_probs=133.6
Q ss_pred hHHHHHhhhcccccc---cccCCCcceeeee--ccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHH
Q 001630 15 YLREELARIEVSWVA---PRFDSLPHVVHIL--TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (1042)
Q Consensus 15 ~~~~~l~~I~~~w~~---~~f~~~~~~l~~L--~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~ 89 (1042)
.|+++|+.|+++|++ ++|+|+.+||.+| +|+|+++++++|++.+++++++|+++|++|||+||++|++|++|++.
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999997 7999999999999 67789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHH
Q 001630 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (1042)
Q Consensus 90 i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~ 151 (1042)
|++||++|..+|+.|++||..|+|++++|++||.++++|++||++|++||+|++||++||++
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.10 E-value=7e-10 Score=124.36 Aligned_cols=186 Identities=19% Similarity=0.288 Sum_probs=170.9
Q ss_pred HhhhcccccccccCCCcceeeeeccC-----CchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhh
Q 001630 20 LARIEVSWVAPRFDSLPHVVHILTSK-----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (1042)
Q Consensus 20 l~~I~~~w~~~~f~~~~~~l~~L~s~-----~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq 94 (1042)
++.|+..|-+++|||..+.+.-+... ..+...++|....+.++..|-..|.+|+.+|-+++++...+...+..+.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988877444 2245567788888999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhc
Q 001630 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (1042)
Q Consensus 95 ~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~ 174 (1042)
..++.+|+.|..++..+....=++-++..+...+.++++.|..|..+.+.-..|+.++++++|..|.+++.+...+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccchhhhHHHHHhhhhhhhHHHHHHHHHHHh
Q 001630 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1042)
Q Consensus 175 ~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~h 207 (1042)
++.++.++++|+..|+.....+-++|=.+|...
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999988888888888654
No 4
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=97.80 E-value=1.5e-05 Score=86.27 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=126.6
Q ss_pred ccccccccccccCCCCCCceeEeeccccccccccc-----chhhhhhhccceecchhhcccccchHHhhcccccchhhHH
Q 001630 880 QEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEM-----APFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQ 954 (1042)
Q Consensus 880 ~~~~~~~y~~~~~~~EpD~~I~~Ln~dL~~~de~l-----s~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvk 954 (1042)
..|....|....-..++.++|-.|.+++..+...| ...+|++-++.+++.+-+++.+.||.|...++++|..|=.
T Consensus 74 ~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRa 153 (234)
T PF10474_consen 74 NSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRA 153 (234)
T ss_pred HHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHH
Confidence 44555679877778999999999999999998888 4556888899999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHhhCCCCCHHHHHHHhhhhHHHHHhhcCcHHHHHHHHhhcccccChHhhhhhhccccCC
Q 001630 955 QICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG 1025 (1042)
Q Consensus 955 km~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~~~~ 1025 (1042)
.|....-.+|+.|..++..++- ++.+.+-.|---|+.+++++.+.++++ ..||.....+|++..+.+
T Consensus 154 lM~lD~q~~~~~le~l~~~~~~---p~~~~Ve~YIKAyYl~e~e~~~W~~~h-~eYs~~ql~~Lv~~~~~~ 220 (234)
T PF10474_consen 154 LMQLDFQQLQNKLEKLSGIRPI---PNREYVENYIKAYYLPEEELEEWIRTH-TEYSKKQLVGLVNCAAAS 220 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-cccCHHHHHHHHHHHHHh
Confidence 9999999999999999976542 267888888888889999999999998 899999999999998776
No 5
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00033 Score=85.43 Aligned_cols=154 Identities=14% Similarity=0.244 Sum_probs=142.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHH
Q 001630 53 ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHII 132 (1042)
Q Consensus 53 ~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i 132 (1042)
+|...++.+|-.|-.=|..--+.|--+|.+++.+...+-+.-+.|+.+|++|++........+....++-.+...+.++.
T Consensus 247 kLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~ 326 (951)
T KOG2115|consen 247 KLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLL 326 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444566666666667777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHH
Q 001630 133 SLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (1042)
Q Consensus 133 ~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~ 206 (1042)
+-|..|+.|.+.-..+..++++.+|..|.+++.....+|.+.+|.+|.....||.|+....+.+-.++++|--.
T Consensus 327 ~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~ 400 (951)
T KOG2115|consen 327 QKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFST 400 (951)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999754
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=97.43 E-value=0.0018 Score=67.81 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=118.4
Q ss_pred HHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhh------hhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHH
Q 001630 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (1042)
Q Consensus 63 ~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~------i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~ 136 (1042)
..|+.+|.+|+..|=++-.+-..|-..+...... +..+++.+..+......--+.+-+-..+..+++.++.+|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999988766654 8999999999999998888889999999999999999999
Q ss_pred hhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHH
Q 001630 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1042)
Q Consensus 137 ~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEEL 204 (1042)
.-+.+-.+|.+|...|..++|..|++-..++..+.+++ ...+..++.+.++.+..-..+.+.|.+.|
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~-~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY-KQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999873 23666666666666554444444333333
No 7
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.26 E-value=0.0025 Score=78.90 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=139.4
Q ss_pred eccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhh-H-HHHHHHhccchhhhH
Q 001630 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (1042)
Q Consensus 42 L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~-L-~~~k~~L~~~~~~L~ 119 (1042)
|+.++.+....++.+..+++...+...|++||.+|-..+.+=.+++.....-...|..+.+. . ......|.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 34556677788898888999999999999999999999888888877766666666433322 1 223444555566777
Q ss_pred HHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhh---cccccchhhhHHHHHhhhhhhhH
Q 001630 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (1042)
Q Consensus 120 ~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~---~~L~~i~aL~~lr~~l~~q~~~L 196 (1042)
.|-.+-..-..++++|..|.++.+.=+.++..+.+++|..|.++|.+.-..++. +...+...+..|+.++..++..|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777777888889999988888889999999999999999999999999986 35566899999999999999999
Q ss_pred HHHHHHHHHHhhcccC
Q 001630 197 FYKVLEDLHAHLYNRG 212 (1042)
Q Consensus 197 ~d~LiEELh~hLYlKs 212 (1042)
...|-++.++.+-.+.
T Consensus 167 ~~~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHHHhheeecC
Confidence 9999999998887653
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.99 E-value=0.011 Score=68.11 Aligned_cols=165 Identities=13% Similarity=0.165 Sum_probs=137.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh
Q 001630 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (1042)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (1042)
..+-+.|.+....++..+..+-..||..|-.+=.....+...+.+..+++..+...|.+-.+....-....++......+
T Consensus 13 ~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~ 92 (338)
T PF04124_consen 13 FSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKK 92 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999877666665555566666666666
Q ss_pred HHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHh
Q 001630 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1042)
Q Consensus 128 ~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~h 207 (1042)
...+++-.+++-++..+|.-++..|.+++|.+|.++.....++..+ ..+++-++.+.++.+..-..+-..||.-|+.-
T Consensus 93 ~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~--~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~ 170 (338)
T PF04124_consen 93 ASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR--FPNIPLVKSIAQEVEAALQQMLSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7777777888899999999999999999999999999987776665 45688999999999888888888888888666
Q ss_pred hcccCcchh
Q 001630 208 LYNRGEYSS 216 (1042)
Q Consensus 208 LYlKs~~~~ 216 (1042)
+|=+.|-
T Consensus 171 --l~l~~~i 177 (338)
T PF04124_consen 171 --LKLPACI 177 (338)
T ss_pred --ccHHHHH
Confidence 4444454
No 9
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.95 E-value=0.0045 Score=72.16 Aligned_cols=179 Identities=17% Similarity=0.301 Sum_probs=148.6
Q ss_pred cccCCCcceeeeeccC----CchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHH
Q 001630 30 PRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1042)
Q Consensus 30 ~~f~~~~~~l~~L~s~----~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~ 105 (1042)
|+|||+.+.=.++.++ +-..-..++++....+++.+...|.++...=+.+=.....+...|.+=-++|..+|..=+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998888887333 335566777778889999999999988744444444555666667777777888888888
Q ss_pred HHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhh-cccccchhhhH
Q 001630 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (1042)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~-~~L~~i~aL~~ 184 (1042)
.+...+..=-.++++|=..-.-....|.+|..+.-|...=++++.++..|+|.+++.+|.-...+++. ....+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999988888751 26789999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHhhc
Q 001630 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (1042)
Q Consensus 185 lr~~l~~q~~~L~d~LiEELh~hLY 209 (1042)
|...+...+..|.+.+.++.+. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999875 44
No 10
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.057 Score=66.15 Aligned_cols=166 Identities=15% Similarity=0.220 Sum_probs=130.6
Q ss_pred eeeeccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhh
Q 001630 39 VHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (1042)
Q Consensus 39 l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L 118 (1042)
-.++.....+.-+.+|+.--..-++.+..+-+.|||||=.||.--.++..-..+=+..|...-.+|+++-..|-.+.++|
T Consensus 38 Rs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~l 117 (800)
T KOG2176|consen 38 RSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDL 117 (800)
T ss_pred HHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33445555566677777766667889999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccc---hhhhHHHHHhhhhhhh
Q 001630 119 HQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV---GALQDVRSELTKLRGV 195 (1042)
Q Consensus 119 ~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i---~aL~~lr~~l~~q~~~ 195 (1042)
.+...-+....+.++.|..-=.+...-.|..++|++|+|+.|.+.+. .+++-=|..+ .=+..+-.+.-.-+..
T Consensus 118 v~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle----~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~ 193 (800)
T KOG2176|consen 118 VRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE----SLEKVYLPRVSNFRFLIVIQNRIPFIKEV 193 (800)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHHHHhcccchhhHHHhhcchHHHHH
Confidence 99999999999999999888888888899999999999999988764 3443333333 3333444444455566
Q ss_pred HHHHHHHHHHHhh
Q 001630 196 LFYKVLEDLHAHL 208 (1042)
Q Consensus 196 L~d~LiEELh~hL 208 (1042)
.-++...++|+-|
T Consensus 194 i~~~~~~~~~e~L 206 (800)
T KOG2176|consen 194 IKSKSMSDFREWL 206 (800)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666676666
No 11
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=95.77 E-value=0.011 Score=71.62 Aligned_cols=296 Identities=14% Similarity=0.146 Sum_probs=152.5
Q ss_pred cchhhhh-hHHHHhhcCCcccccccccccccccccccCcccchhhHHHHHHHHHHhhhhhhcch--hHHHHH-HHHHHHH
Q 001630 637 TMFVDYR-KGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFL 712 (1042)
Q Consensus 637 ql~~~~~-~~~~~~~~~~daf~~~~~~~~~~~~~~~~~rPI~k~t~~~~~~~~~l~~ml~t~p~--Y~~~~~-~li~~~L 712 (1042)
+++.+.. ++++.++.++|||+.+.+... ......+|= ++|..|..++..+..=...+|. |+-.|+ .+=+.+|
T Consensus 139 ~~E~~~a~~r~~~i~~s~~aw~~~~~~~~---~~~~~~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~ll 214 (494)
T PF04437_consen 139 NAEKEFALERFDEIISSPDAWQIDYDDVE---ADSDELKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLL 214 (494)
T ss_dssp HHHHHHHHHHHH---------------HT---TSSGGGG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccc---CCchhhcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence 3444443 488899999999988754321 011233444 6888888888877777777774 666777 8889999
Q ss_pred HHHHHHHHhHHHHHHHhhhhchhccccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhccccccccccc
Q 001630 713 ERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLEPASASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENL 792 (1042)
Q Consensus 713 ~~y~~~c~~~y~~lv~~~~s~~~~~~~d~~~lm~~~~~~~~l~~~~~~~~~~~~~~~l~e~E~~l~~~~~~~~~i~~~dl 792 (1042)
.+|++++...|++...... . . .. ...+-
T Consensus 215 d~~~~~L~~~~~~~~~~~s---------~------------~-~~-------------~~~~~----------------- 242 (494)
T PF04437_consen 215 DDYHDRLSQSLEAFESSTS---------T------------L-AS-------------LSGDS----------------- 242 (494)
T ss_dssp HHTHHHHHHHHHHHHHT--------------------------SC-------------EEHHH-----------------
T ss_pred HHHHHHHHHHHHHHhhccc---------c------------h-hh-------------ccCCc-----------------
Confidence 9999999999985332100 0 0 00 00011
Q ss_pred cccCCcEEEeeccchhhHHhHHHHHHHhhhhhhcc-----ccccccCCCC--CCCCCCCCCcchhhhHHHHhHhhhhhHh
Q 001630 793 IHDENKLILLASLSDSLEYVADSIERLGRATLRES-----NLVEESRKPH--HNRSSSAPSRDLASFADEYRKLAIDCLK 865 (1042)
Q Consensus 793 i~d~~~l~~La~L~~SL~Wla~~i~~L~~~~~~~~-----~~~~~~~~~~--~~r~~~~~~~~f~~l~~~f~~La~~~Ll 865 (1042)
.+.-+|.+..|..|+...+......+---. ....+ +... ..+.++.-..-|+..+..|+.|..+++-
T Consensus 243 -----~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~-~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~ 316 (494)
T PF04437_consen 243 -----GLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSN-NSLEDIANETSSEEGSIFDETISAYEKLRKRMLE 316 (494)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHCTSHHHH-------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcc-cccccccccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 011145556666666665544443210000 00000 0000 0000011224599999999999987766
Q ss_pred hhhhhhhhhhhhhhccccc-cccccccC-----CCCCCceeEeecccccccccccchhhhhhhccceecchhhcccccch
Q 001630 866 VLRVEMQLETIFHLQEMTS-RDYLEDQD-----AEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASI 939 (1042)
Q Consensus 866 ~LrlEvR~~~iy~L~~~~~-~~y~~~~~-----~~EpD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI 939 (1042)
.+-=-++-..=-.+.+.++ ..|....+ +..|.|.....-.-|...=..|..+|++....-|+..+...++..|+
T Consensus 317 ~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~ 396 (494)
T PF04437_consen 317 SIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLW 396 (494)
T ss_dssp HHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 5533322222222233333 45643222 23444444444444444445566677888888899999999999999
Q ss_pred HHhhcccccchhhHHHHhhhhHHHHHHHhhCCCCCHHHHHHHhhhhHHHHHhhcCcHHH
Q 001630 940 KALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEA 998 (1042)
Q Consensus 940 ~~~~~i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~~~~v~~~l~ra~~yyeL~~~~~~~ 998 (1042)
...-...+.|..|+.++...+-+|-..+..-. .+|+ ..|.+.+.--.|+.++.+.
T Consensus 397 ~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~-~~p~---~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 397 ESILMSNKFSRAGAAQLQFDMRALFSVFSQYT-PRPE---AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp HTTTTTS-B-HHHHHHHHHHHHHHHTTS--TT-SGG----HHHHHHHHHHHHHGGGG-C
T ss_pred HHhhhcCeeChhHHHHHHHHHHHHHHHHHhhc-cCHH---HHHHHHHHHHHHcCCCCcc
Confidence 98888889999999999999977766666544 4554 3688888888888877654
No 12
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=95.14 E-value=0.017 Score=57.35 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=39.1
Q ss_pred cccccccCCCcceeeeeccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHH
Q 001630 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1042)
Q Consensus 26 ~w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~ 105 (1042)
++-.++|+|-..+...=.-...+.-...|....+.++.+|-++|+++|++|=+-=.+...+-..|..-+.-+..+++.+.
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 34458999888777732444446666677777899999999999999999999888888888889999999999999999
Q ss_pred HHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHH
Q 001630 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (1042)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~ 151 (1042)
+.+..+....+.+...-.......+....|..+-.+..+=+++|.+
T Consensus 87 ~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 87 SVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999999998888877777777777766666665555555555544
No 13
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.74 Score=54.98 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=133.1
Q ss_pred CCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHh
Q 001630 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (1042)
Q Consensus 45 ~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~ 124 (1042)
+...++...+.+....+++.+..+-..+|..|-..=..++.|...+..++.....+--.+-+=.+....-.+....+...
T Consensus 34 e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~~~~~~i~e~ 113 (581)
T KOG2069|consen 34 EELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQDFAEEISEH 113 (581)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHHHHHHHhhHh
Confidence 33456667788888999999999999999999998889999999999999888776665544444333334555566666
Q ss_pred hhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHH
Q 001630 125 SVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1042)
Q Consensus 125 s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEEL 204 (1042)
.-.-+.+++-.+++-++..+|+.++..|...+|.+|.++-.-+.++-++.+.- ++.++++.+....-..|-+.|++-|
T Consensus 114 ~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~i~~~v~~tv~~ll~qL~~~l 191 (581)
T KOG2069|consen 114 RRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQEIATEVEQTVQKLLEQLIQQL 191 (581)
T ss_pred HHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888899999999999999999999999999999999988775544 8999999999988888888888888
Q ss_pred HHhhcc
Q 001630 205 HAHLYN 210 (1042)
Q Consensus 205 h~hLYl 210 (1042)
..-+=+
T Consensus 192 ~~pl~l 197 (581)
T KOG2069|consen 192 RTPLQL 197 (581)
T ss_pred hhhhhH
Confidence 766644
No 14
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=93.63 E-value=0.15 Score=50.56 Aligned_cols=111 Identities=15% Similarity=0.269 Sum_probs=71.0
Q ss_pred cccccccCCCcceeeeec--------cCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhh
Q 001630 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (1042)
Q Consensus 26 ~w~~~~f~~~~~~l~~L~--------s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i 97 (1042)
.+..|+|||...+=.+|. ..+-...+.++....+++++.|+..|.+||..+=+....=...-..++.-+..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356799999999999986 555577788999999999999999999999998654444333333333333444
Q ss_pred hhhhhhHHHHHH-------HhccchhhhHHHHHhhhhHHHHHHHHH
Q 001630 98 KELKVDLAEAKR-------RLGTRNKQLHQLWYRSVTLRHIISLLD 136 (1042)
Q Consensus 98 ~~~k~~L~~~k~-------~L~~~~~~L~~L~~~s~~~~~~i~~L~ 136 (1042)
..+..+...-+. .+......|++||...--.+.++..|.
T Consensus 82 ~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~ 127 (132)
T PF10392_consen 82 ESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQ 127 (132)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333333 333444445555555554444444443
No 15
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=0.5 Score=57.43 Aligned_cols=188 Identities=14% Similarity=0.223 Sum_probs=136.2
Q ss_pred HHHhhhcccccccccCCCcceeeee----ccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhh
Q 001630 18 EELARIEVSWVAPRFDSLPHVVHIL----TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (1042)
Q Consensus 18 ~~l~~I~~~w~~~~f~~~~~~l~~L----~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~s 93 (1042)
+++..|....+-|+|+.+...=.++ +-.+-+.-.++++..-.++++.|+.+|..+-+.=.+.=-+-..+..+|.+=
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 4556677777778898888877776 334446667777778889999999999766544433333333333444444
Q ss_pred hhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhh
Q 001630 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (1042)
Q Consensus 94 q~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~ 173 (1042)
-.+|..+|+.-+.....+..--.++++|=-.-.....-|..|..+.-|...=+++..+++++.|-+|+..|.--+.+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 44444555555555555555556778888888888889999999999999999999999999999999999988888872
Q ss_pred -cccccchhhhHHHHHhhhhhhhHHHHHHHHHH
Q 001630 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (1042)
Q Consensus 174 -~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh 205 (1042)
..-.+|+-+..|+..+...+..|...+-+...
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~ 197 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFK 197 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25567888888888888888877777766653
No 16
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=81.24 E-value=0.56 Score=53.38 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=69.5
Q ss_pred cccccccccccCCCCCCceeEeecccccccccccchhhhhhhccceecchhhcccccchHHh--hcccccchhhHHHHhh
Q 001630 881 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKAL--ADMKNINLFGVQQICR 958 (1042)
Q Consensus 881 ~~~~~~y~~~~~~~EpD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~--~~i~~iN~~Gvkkm~r 958 (1042)
.+..-+|.+....++|+.+|.+|..-|..+=+..-..||+.-+..+.-|-..-|+..|+.-. ..+++||.+|++.+-.
T Consensus 162 ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~ 241 (311)
T PF04091_consen 162 ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDL 241 (311)
T ss_dssp TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHH
T ss_pred hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Confidence 44556799999999999999999999887776667789988777777777777777777777 8999999999999999
Q ss_pred hhHHHHHHHhhCCCCCHH--HHHHHhhhhHHHHHhhcC-cHHHHHHHHhhcccccChHhhhhhhccc
Q 001630 959 NSIALEQALAAIPSIDSE--AVRRRLDRVRTYYELLNM-PFEALLAFVTEHENLFTTTEYASLLKVN 1022 (1042)
Q Consensus 959 NI~~LQQ~L~nI~~~~~~--~v~~~l~ra~~yyeL~~~-~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~ 1022 (1042)
+|-.|.+-.+++...... ....-|...||.=.|+.. ++++..+.-.. ..+|..-.+..+..|+
T Consensus 242 Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r-~~kY~~v~p~~~~~lL 307 (311)
T PF04091_consen 242 DVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIR-ERKYSRVKPEKAIKLL 307 (311)
T ss_dssp HHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCcccc-ccccCCCCHHHHHHHH
Confidence 999999999998322110 112357778888887754 55665443222 3456666666555443
No 17
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.43 E-value=2.3 Score=49.88 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=117.3
Q ss_pred ccccCCCcceeeeeccCCchhhhh---hhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHH
Q 001630 29 APRFDSLPHVVHILTSKDREGEVQ---ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1042)
Q Consensus 29 ~~~f~~~~~~l~~L~s~~~~~~~~---~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~ 105 (1042)
.+.|||=-++..++.....+.-.. +.-.+-..+|.-++-+|.|||+-|-++-.+-.+|.+.+..--.....+-+...
T Consensus 30 gahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms 109 (636)
T KOG2346|consen 30 GAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMS 109 (636)
T ss_pred CCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHH
Confidence 468888777666653333221111 11223368899999999999999999988888888777766666665555555
Q ss_pred HHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHH
Q 001630 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV 185 (1042)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~l 185 (1042)
...+....-.+.|.+=...-.+....-.+|.++..+-..|.++...+....|=+|+.--..|-..+..|+ +.+..++
T Consensus 110 ~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~--~~psfq~- 186 (636)
T KOG2346|consen 110 SIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD--GRPSFQE- 186 (636)
T ss_pred HHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC--CCCcHHH-
Confidence 4444433333333333333333333445677888899999999999999999999988877777776543 2333333
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhccc
Q 001630 186 RSELTKLRGVLFYKVLEDLHAHLYNR 211 (1042)
Q Consensus 186 r~~l~~q~~~L~d~LiEELh~hLYlK 211 (1042)
-....+.++++++..|...+..-
T Consensus 187 ---~~~~seei~~rl~~qL~~rlr~~ 209 (636)
T KOG2346|consen 187 ---DDVPSEEIRLRLVAQLGTKLRSD 209 (636)
T ss_pred ---hccchHHHHHHHHHHHHHHhccC
Confidence 33456678899999998888753
No 18
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=52 Score=40.89 Aligned_cols=161 Identities=8% Similarity=0.069 Sum_probs=106.1
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhh
Q 001630 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (1042)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (1042)
-...++++....+.+++.|+.++.+-.+-=+.++..-+.....+.---....+++..+.....+-..-.+..+.|=...-
T Consensus 36 i~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lDla~~ 115 (773)
T KOG0412|consen 36 IDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAETVSGKVRALDLAQN 115 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777889999999999884443323322222223333333344445555555544444555788889999999
Q ss_pred hHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhh----hhhcccccchhhhHHHHHh---hhhhhhHHHH
Q 001630 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSEL---TKLRGVLFYK 199 (1042)
Q Consensus 127 ~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~----l~~~~L~~i~aL~~lr~~l---~~q~~~L~d~ 199 (1042)
...+.++..++|-.++.+-+-+..-|..+.|..|...+.+.+.+ ++...-..+++.+.++..+ .+-++.|.-+
T Consensus 116 Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l 195 (773)
T KOG0412|consen 116 RVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKERLSKL 195 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776 2222223344445554433 3334445555
Q ss_pred HHHHHHHh
Q 001630 200 VLEDLHAH 207 (1042)
Q Consensus 200 LiEELh~h 207 (1042)
+-+++|.-
T Consensus 196 ~~~~f~eA 203 (773)
T KOG0412|consen 196 FKERFTEA 203 (773)
T ss_pred HHHHHHHH
Confidence 55555443
No 19
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=72.02 E-value=46 Score=42.46 Aligned_cols=150 Identities=12% Similarity=0.163 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhh-------HHHHHhhhhHHHH
Q 001630 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHI 131 (1042)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L-------~~L~~~s~~~~~~ 131 (1042)
+.+.+.|..+=.++-+.+=.+=..-..+...|.++...+.+|-..|......|..-++++ +.|-..+.-++..
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L 87 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLL 87 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHH
Confidence 445555555545555555555566677888888888888888888888888888888888 4566666777777
Q ss_pred HHHHHhhhcccccchHHHHHhhcchh---------HHHHHHHhhhhhhh------hhcccccchhhhHHHHHhhhhhhhH
Q 001630 132 ISLLDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALML------EREGLQTVGALQDVRSELTKLRGVL 196 (1042)
Q Consensus 132 i~~L~~ie~l~~vP~~ie~~i~~k~y---------~~A~~ll~~~~~~l------~~~~L~~i~aL~~lr~~l~~q~~~L 196 (1042)
++-|+.|=.-..+|+.-...+.+..+ ..|...|..|+..+ ..+++..+.|+++=|+.++.....+
T Consensus 88 ~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F 167 (701)
T PF09763_consen 88 LNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKF 167 (701)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666788887777776655 45777788888883 3458999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 001630 197 FYKVLEDLHAHL 208 (1042)
Q Consensus 197 ~d~LiEELh~hL 208 (1042)
...+++.|.+..
T Consensus 168 ~~r~~~~l~~~F 179 (701)
T PF09763_consen 168 CKRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHHH
Confidence 999999987765
No 20
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=69.11 E-value=6.7 Score=35.54 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=42.1
Q ss_pred ccccCCCcceeeeeccCCc---hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHh
Q 001630 29 APRFDSLPHVVHILTSKDR---EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLF 90 (1042)
Q Consensus 29 ~~~f~~~~~~l~~L~s~~~---~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i 90 (1042)
.++|||-.++=.+|....- ..-..++.......+..|+.+|..||..|=.+-..=..+-..+
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~ 67 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDL 67 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678887777777744442 3444566677789999999999999999865544433333333
No 21
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=20 Score=42.98 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=68.3
Q ss_pred cccccccCCCcceeeee-ccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHH-------hhhhhhhh
Q 001630 26 SWVAPRFDSLPHVVHIL-TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL-------FSESAESI 97 (1042)
Q Consensus 26 ~w~~~~f~~~~~~l~~L-~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~-------i~~sq~~i 97 (1042)
++-.++||.=.. +... ..++.+.-+..|+-.++-++.++-+++++-|-+|=+-=.+--.+-.. +.+-++.|
T Consensus 27 eFmkedFdve~f-~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei 105 (705)
T KOG2307|consen 27 EFMKEDFDVERF-MSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEI 105 (705)
T ss_pred hhccccCCHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHH
Confidence 444566663222 2222 44555666667777789999999999999999997644444444444 44445555
Q ss_pred hhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcc
Q 001630 98 KELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGI 141 (1042)
Q Consensus 98 ~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l 141 (1042)
..+|+++.++-..+..+.+++..+...-+.....+..+..||+|
T Consensus 106 ~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL 149 (705)
T KOG2307|consen 106 KSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKL 149 (705)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555444
No 22
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=59.49 E-value=18 Score=40.75 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred cchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhh
Q 001630 113 TRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (1042)
Q Consensus 113 ~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q 192 (1042)
...++|.+|......++++-++...+-=...+|+-|+.+|.+++|..|+..+- ++.+.++. +-+.=|+.||+.-
T Consensus 146 Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~-~f~L~dkf-----pPv~lLk~yl~~~ 219 (290)
T PF07899_consen 146 FDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY-AFGLVDKF-----PPVPLLKSYLEDS 219 (290)
T ss_pred cCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHH-HHcCCCCC-----CCHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999954 78888774 4555688898887
Q ss_pred hhhHHHH
Q 001630 193 RGVLFYK 199 (1042)
Q Consensus 193 ~~~L~d~ 199 (1042)
+.+-..+
T Consensus 220 k~~~~~~ 226 (290)
T PF07899_consen 220 KKAAKRI 226 (290)
T ss_pred HHHHHHH
Confidence 6665443
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.25 E-value=87 Score=40.94 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=46.5
Q ss_pred HhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhH
Q 001630 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (1042)
Q Consensus 70 ~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~ 128 (1042)
.+-.++.+.+=..-..+...|..+|+.+.++.+....+...+......|.+||..-.+.
T Consensus 1573 ~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1573 EEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666777788888899999999999999999999999999998765544
No 24
>PRK11637 AmiB activator; Provisional
Probab=53.17 E-value=2.1e+02 Score=34.14 Aligned_cols=147 Identities=13% Similarity=0.173 Sum_probs=66.1
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhh
Q 001630 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (1042)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (1042)
.+.++.++++..+.+++.++.+=.+ .+........+...|...+.++..+...+...+..|.....++.++-.+-.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~----~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQ----RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555555422111 112222233333334444444444444444444444444444443333322
Q ss_pred hHH-HHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHH
Q 001630 127 TLR-HIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYK 199 (1042)
Q Consensus 127 ~~~-~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~ 199 (1042)
+.+ .+=+.+..+-.--..+ -++-+++.+.+-.+.+++. -+..+...+-.-|..+.+.+.+|..++..|-+.
T Consensus 121 ~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~~-~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~ 192 (428)
T PRK11637 121 AQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERILA-YFGYLNQARQETIAELKQTREELAAQKAELEEK 192 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1222233333333322 4566666665544333221 222244446666777888888887777666433
No 25
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.27 E-value=1.7e+02 Score=35.77 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=85.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhh---hhhhhhHHHHHHHhccchhhhHHHHHhh
Q 001630 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI---KELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (1042)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i---~~~k~~L~~~k~~L~~~~~~L~~L~~~s 125 (1042)
....+++.....+.+.+.. +-.++..++.+++.|+.+...++...... ...=..+..+-+.+.+-.+++. .-..+
T Consensus 281 ~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~-~~~~~ 358 (503)
T KOG2273|consen 281 EKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT-AEKDS 358 (503)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhH
Confidence 4455566666667777777 77788999999999999999999888854 3333344444444444333221 12222
Q ss_pred hhHHHHHHHH-HhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHH
Q 001630 126 VTLRHIISLL-DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (1042)
Q Consensus 126 ~~~~~~i~~L-~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEEL 204 (1042)
..+.+.++.+ .-++.++.+.+.-.. ....+..|...+...-..+++...+...--...+..+...+-.....-+.++
T Consensus 359 ~~~~~~l~~~i~~~~~~k~~~~~r~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~ 436 (503)
T KOG2273|consen 359 KKLAEQLREYIRYLESVKSLFEQRSK--ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNEL 436 (503)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 2222222211 113333333333333 3344455555555544444442222111003333444455555555777888
Q ss_pred HHhhcccCcc
Q 001630 205 HAHLYNRGEY 214 (1042)
Q Consensus 205 h~hLYlKs~~ 214 (1042)
++.++.+...
T Consensus 437 ~~~~~~~~~~ 446 (503)
T KOG2273|consen 437 EELLALKELE 446 (503)
T ss_pred HHHHHhhhHH
Confidence 8888877644
No 26
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=44.30 E-value=42 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.9
Q ss_pred HhhhhHHHHHhhcCcHHHHHHHHhhc-ccccChHhhhhhh
Q 001630 981 RLDRVRTYYELLNMPFEALLAFVTEH-ENLFTTTEYASLL 1019 (1042)
Q Consensus 981 ~l~ra~~yyeL~~~~~~~ll~~i~e~-~~~Fs~~Ey~~ll 1019 (1042)
.+.+|+.|-+...++.++|.+.+... |..||.+|-...+
T Consensus 6 Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 6 ALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 68999999999999999999999774 7889999876554
No 27
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=42.76 E-value=4e+02 Score=29.01 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHH-HHHHHhhhhhhhhhhhhhhHHHHHHHhccch-hhhHH
Q 001630 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQ 120 (1042)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~-~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~-~~L~~ 120 (1042)
+.-+.++-+..+++-.+-...+..=.+.|+..+.++- .-+..|+..+.++..-|=.+-.||+.++.+. ++|+.
T Consensus 87 G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~ 161 (223)
T cd07614 87 GDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQ 161 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 3334444445556666666666666778888888885 6677788888888888888888888776532 34443
No 28
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=41.29 E-value=2.6e+02 Score=36.17 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=97.8
Q ss_pred ccccccCCCcceeeeeccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHh--------hHHHHHHHhhhhhhhhh
Q 001630 27 WVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQ--------NYSQILRLFSESAESIK 98 (1042)
Q Consensus 27 w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~--------sy~~i~~~i~~sq~~i~ 98 (1042)
+.+++||+..-+=..+.+.+.+....+++.....+...|+- +-|+-|.+|. +-=.+...+..-+..+.
T Consensus 5 f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql----~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~ 80 (766)
T PF10191_consen 5 FSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQL----YSQEVNASLEETSQQALQRVPRVLREVDRLRQEAA 80 (766)
T ss_pred hCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567777766666665544443333332222233333332 2233333332 22234444444455555
Q ss_pred hhhhhHHHHHHHhccch-------hhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhh
Q 001630 99 ELKVDLAEAKRRLGTRN-------KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (1042)
Q Consensus 99 ~~k~~L~~~k~~L~~~~-------~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l 171 (1042)
.+|+.+...++.+..-. ..|.+|-.-..+-...-+.|.+=++.-..-..|+.++..+.|..+.+-|.+.-+-+
T Consensus 81 ~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL 160 (766)
T PF10191_consen 81 SLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSL 160 (766)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 55555555554442211 11222222222333333444455666677788999999999999988887666666
Q ss_pred hhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHhh
Q 001630 172 EREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (1042)
Q Consensus 172 ~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~hL 208 (1042)
.- |.+++.-.+=|..|+..++.|..++--.|-.-+
T Consensus 161 ~~--l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al 195 (766)
T PF10191_consen 161 AV--LQDVPDYEERRQQLEALKNRLEALVSPQLVQAL 195 (766)
T ss_pred HH--HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 43 667887888888898888888887776665554
No 29
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=41.22 E-value=1e+02 Score=35.22 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHH-----HHhhhhhhhhhhhhhhHHH-HHHHhccchhhhHHHH
Q 001630 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQLW 122 (1042)
Q Consensus 49 ~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~-----~~i~~sq~~i~~~k~~L~~-~k~~L~~~~~~L~~L~ 122 (1042)
.-..++++..+.+...++..+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|...+..|..+.
T Consensus 147 ~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 147 ELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777777777777777666665533 5677788888888888765 5666666677777666
Q ss_pred Hh
Q 001630 123 YR 124 (1042)
Q Consensus 123 ~~ 124 (1042)
.+
T Consensus 227 ~~ 228 (319)
T PF02601_consen 227 NR 228 (319)
T ss_pred Hh
Confidence 33
No 30
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=40.74 E-value=4.8e+02 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=32.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhh
Q 001630 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (1042)
Q Consensus 51 ~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~ 96 (1042)
...|+...+.+.+.+..+|. |.++...+++.|+.....++.+...
T Consensus 33 ~~~le~~Lk~l~~~~~~l~~-~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 33 VDKLEEQLKKLYKSLERLVK-RRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 34455555566565555554 5688999999999999999988776
No 31
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=40.57 E-value=5e+02 Score=28.04 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=73.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh--
Q 001630 50 EVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT-- 127 (1042)
Q Consensus 50 ~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~-- 127 (1042)
.+..|+...+.+-++++.+|. |+.+...+++.|+.....++.+-. ...|..+=..++..-+.+.++..+...
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~-~r~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~d 93 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVN-HRKELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADTD 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777665 558999999999999999998875 245677777777777777777776332
Q ss_pred HHHHHHHHHh-hhcccccchHHHHHhhcc-hhHHHHHHHhhhhhhhhh
Q 001630 128 LRHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLER 173 (1042)
Q Consensus 128 ~~~~i~~L~~-ie~l~~vP~~ie~~i~~k-~y~~A~~ll~~~~~~l~~ 173 (1042)
...+.+.|+. +.-+.+||+-+.....-- +|..|..-|...-..+++
T Consensus 94 ~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~K 141 (224)
T cd07623 94 FYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAK 141 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344433 444555666666654433 334444444433333333
No 32
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=38.84 E-value=6.3e+02 Score=31.30 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=72.2
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHH-------H-HhhhcccccchHHHHHh----hcch
Q 001630 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISL-------L-DQIEGIAKVPARIEKLI----AGKQ 156 (1042)
Q Consensus 89 ~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~-------L-~~ie~l~~vP~~ie~~i----~~k~ 156 (1042)
.|.++..-+.+|-..|..=...|+.-..+++.|-.+|..-.--++- | .-|+.+.--|+-|+.-+ .+..
T Consensus 83 qi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~ 162 (683)
T KOG1961|consen 83 QIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPE 162 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchH
Confidence 3344444444444444444445555455555444444433222221 1 12555555555555544 3458
Q ss_pred hHHHHHHHhhhhhhhh-hcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHhhc
Q 001630 157 YYAAVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1042)
Q Consensus 157 y~~A~~ll~~~~~~l~-~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~hLY 209 (1042)
|.+|.+.|..=++..+ ..+..+-.|++|++.-|+..+..-...+-+=|-.-||
T Consensus 163 f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~ 216 (683)
T KOG1961|consen 163 FLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIK 216 (683)
T ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 6789999999999999987666555554444444443
No 33
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=38.74 E-value=3.2e+02 Score=33.51 Aligned_cols=120 Identities=22% Similarity=0.331 Sum_probs=67.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHH-------HHHHHHHh-hhcccccchHHHHHhhcc---hh-
Q 001630 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR-------HIISLLDQ-IEGIAKVPARIEKLIAGK---QY- 157 (1042)
Q Consensus 90 i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~-------~~i~~L~~-ie~l~~vP~~ie~~i~~k---~y- 157 (1042)
|.+|.+.+..|.+.|..=+..|+.-+.+++.|-.+|.+.. .+.+.|.. |+++.--|+-|...+.+. +|
T Consensus 23 i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~e~~~ 102 (508)
T PF04129_consen 23 IQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVNEQYI 102 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCCHHHH
Confidence 3445555555555555555555555555555555554442 23333333 455554455554444321 34
Q ss_pred HHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHhhc
Q 001630 158 YAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (1042)
Q Consensus 158 ~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~hLY 209 (1042)
.++.+++.+-..........+..|.+|++..|+..+..-.+.+-+=|-..||
T Consensus 103 ~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 103 EELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred HHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777766666665678999999999999977666555444444433443
No 34
>PF12854 PPR_1: PPR repeat
Probab=37.35 E-value=34 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhh
Q 001630 315 HVKYLQTMVECLCILGKVAAAGAIIC 340 (1042)
Q Consensus 315 sf~yi~~lvesL~~LgkL~~Al~~i~ 340 (1042)
.+.| .+||.++.+-|++++|.+++.
T Consensus 7 ~~ty-~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTY-NTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 3334 789999999999999998764
No 35
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=36.88 E-value=4.1e+02 Score=28.95 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=79.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHH-HHHHHhhhhhhhhhhhhhhHHHHHHHhcc-chhhhHHHHHhh
Q 001630 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLWYRS 125 (1042)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~-~i~~~i~~sq~~i~~~k~~L~~~k~~L~~-~~~~L~~L~~~s 125 (1042)
+.-+.++=+..+++-.+-...+..=.+.|...+.+|. .-+..|+..+.++..-|=.+-.||..++. .+++|+.-..+-
T Consensus 87 G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~~kF 166 (223)
T cd07613 87 GPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKF 166 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHHHHH
Confidence 3344455555566666777777777788999999876 55567889999999999999999998875 477888775555
Q ss_pred hhHHH-----HHHHHHh-hhcccccchHHHHHhhcchhHHHHHHHhhh
Q 001630 126 VTLRH-----IISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQS 167 (1042)
Q Consensus 126 ~~~~~-----~i~~L~~-ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~ 167 (1042)
.+.++ |..+|+. +|.++++-+-|++-+. -|.+|.++|.+-
T Consensus 167 ees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~l 212 (223)
T cd07613 167 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQV 212 (223)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 55444 4447777 7777766555555442 334455554443
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.80 E-value=4.2e+02 Score=30.46 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhH-------HHHHHHhc-cchhhhHHHHHhhhhH
Q 001630 57 QNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL-------AEAKRRLG-TRNKQLHQLWYRSVTL 128 (1042)
Q Consensus 57 ~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L-------~~~k~~L~-~~~~~L~~L~~~s~~~ 128 (1042)
|+-.....|...+.+|+.+...--..-..-...+++.-.++...++.| .+....++ |.+++|..+-.+-..+
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH
Confidence 334445555555555555555544444433333333333333222222 22222222 4455555555555555
Q ss_pred HHHHH----HHHhh-hcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhh
Q 001630 129 RHIIS----LLDQI-EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTK 191 (1042)
Q Consensus 129 ~~~i~----~L~~i-e~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~ 191 (1042)
+.-|+ -|+++ +++..+-++|+.+-.+|.= ...-+.++-+..+.-.-|+..-+..|+..+..
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~--l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQE--LLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 54444 22222 2333444444444443332 22233344444444455566666666666543
No 37
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=36.10 E-value=98 Score=38.43 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhccc
Q 001630 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (1042)
Q Consensus 63 ~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~ 142 (1042)
..|+..|-+-|.+.=.+--+-..+.+.-..--++|+.++.+...-...=-.+++-+.+++-....| --+--+|..|.
T Consensus 38 EELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~---Yg~aaqVKyLv 114 (863)
T KOG2033|consen 38 EELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHL---YGTAAQVKYLV 114 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHH---HHHHHHHHHHH
Confidence 345556666665554433333333322222223333333333332222233456666666333333 33455888899
Q ss_pred ccchHHHHHhhcchhHHHHHHHhhhh
Q 001630 143 KVPARIEKLIAGKQYYAAVQLHAQSA 168 (1042)
Q Consensus 143 ~vP~~ie~~i~~k~y~~A~~ll~~~~ 168 (1042)
..|++|=..+.+.+|++|+.++..+-
T Consensus 115 ~~PE~IWg~lD~s~fl~At~ly~~~~ 140 (863)
T KOG2033|consen 115 SSPELIWGHLDSSEFLDATVLYCMVE 140 (863)
T ss_pred hCHHHhhccccccchHHHHHHHHHHH
Confidence 99999999999999999999876543
No 38
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=34.74 E-value=4.6e+02 Score=28.54 Aligned_cols=105 Identities=15% Similarity=0.253 Sum_probs=73.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhH-HHHHHHhhhhhhhhhhhhhhHHHHHHHhcc-chhhhHHHHHhh
Q 001630 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLWYRS 125 (1042)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy-~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~-~~~~L~~L~~~s 125 (1042)
+.-+.++-+..+++-.+....+..=.+.|...+.+| ..-+..|+..+.++..-|=.+-.||..++. .+++++.-..+-
T Consensus 87 G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~~kf 166 (223)
T cd07615 87 GNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAVEKF 166 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 444555566667777777777888888999999988 466778889999999999999999988876 366666655544
Q ss_pred hhH-----HHHHHHHHh-hhcccccchHHHHHh
Q 001630 126 VTL-----RHIISLLDQ-IEGIAKVPARIEKLI 152 (1042)
Q Consensus 126 ~~~-----~~~i~~L~~-ie~l~~vP~~ie~~i 152 (1042)
.+- ..|..+|+. +|.++++-.-|++-+
T Consensus 167 ees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl 199 (223)
T cd07615 167 EESKELAERSMFNFLENDVEQVSQLSVLIEAAL 199 (223)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 433 445666665 555555555544443
No 39
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.24 E-value=1.4e+02 Score=36.26 Aligned_cols=150 Identities=15% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCCCCchhhhHHH---------HHhhhcccccccccCCCcceeeee-ccCCchhhhhhhhh--hhhhHHHHHHHH---HH
Q 001630 6 GLPISPEKAYLRE---------ELARIEVSWVAPRFDSLPHVVHIL-TSKDREGEVQILKD--QNDIIEEVVDEV---VH 70 (1042)
Q Consensus 6 ~~p~~~~~~~~~~---------~l~~I~~~w~~~~f~~~~~~l~~L-~s~~~~~~~~~l~~--~~~~~~~~L~~~---V~ 70 (1042)
.+||+-..++++. ..+.-..+|.+-.-+..+-+=..| .-++..+.+..+.. .-+.++..|..+ +.
T Consensus 42 ~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~ 121 (570)
T COG4477 42 NLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFADVEEHLFEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIE 121 (570)
T ss_pred cCCchhHHHHHhcCcccCccHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHH
Confidence 4788888888854 345555666653333333333332 22222222222211 112222222222 11
Q ss_pred hhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHH
Q 001630 71 AYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEK 150 (1042)
Q Consensus 71 ~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~ 150 (1042)
.=-++.|--+.++.+=...|..+.+.-.++|..+.+=...++..-++|.+ +++.+-.--.+.+.
T Consensus 122 ~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk----------------~Le~i~~~l~qf~~ 185 (570)
T COG4477 122 QILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEK----------------KLENIEEELSQFVE 185 (570)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH----------------HHHHHHHHHHHHHH
Confidence 11234555555555555555555555555555544444444433333221 34455555567888
Q ss_pred HhhcchhHHHHHHHhhhhhhh
Q 001630 151 LIAGKQYYAAVQLHAQSALML 171 (1042)
Q Consensus 151 ~i~~k~y~~A~~ll~~~~~~l 171 (1042)
+-+++.|.+|.++|.++-..+
T Consensus 186 lt~~Gd~ieA~evl~~~ee~~ 206 (570)
T COG4477 186 LTSSGDYIEAREVLEEAEEHM 206 (570)
T ss_pred hccCCChhHHHHHHHHHHHHH
Confidence 899999999999998776544
No 40
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.93 E-value=1.5e+02 Score=37.52 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=22.3
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHHhhcccC
Q 001630 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (1042)
Q Consensus 181 aL~~lr~~l~~q~~~L~d~LiEELh~hLYlKs 212 (1042)
.|..++.++......-...-+.+.-+.|+-|.
T Consensus 491 ~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 491 TLKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35677777877766666666777777777664
No 41
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=32.81 E-value=4.5e+02 Score=28.61 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHH-------------HHHhccchhhhHHHHHhhhhH
Q 001630 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA-------------KRRLGTRNKQLHQLWYRSVTL 128 (1042)
Q Consensus 62 ~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~-------------k~~L~~~~~~L~~L~~~s~~~ 128 (1042)
...|..+..+|-++|...= .|+..+..+++++.+|..++..+... ...|..=...-++|-.+...|
T Consensus 66 ~~~Lg~~M~~~g~elg~~S-~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdy 144 (223)
T cd07592 66 EGLLGEVMLKYGRELGEDS-NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDY 144 (223)
T ss_pred ccHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667766663321 46666666666666666665554431 111222233444555555555
Q ss_pred HHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHH---HHHhhhhhhhHHHHHHHHHH
Q 001630 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLH 205 (1042)
Q Consensus 129 ~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~l---r~~l~~q~~~L~d~LiEELh 205 (1042)
+..-.-+. +.| +-|--.++.+|.++.+.....+.-+-..+-..|..|..+ ....-.+-..+...|..+|+
T Consensus 145 D~~k~k~~------k~~-eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 145 DYKKRKQG------KGP-DEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHhcc------cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333222 122 344445788888888888777665543233333333332 33333444555555666665
Q ss_pred Hh
Q 001630 206 AH 207 (1042)
Q Consensus 206 ~h 207 (1042)
..
T Consensus 218 ~~ 219 (223)
T cd07592 218 ER 219 (223)
T ss_pred HH
Confidence 43
No 42
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.63 E-value=78 Score=39.26 Aligned_cols=167 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCchhhhH---------HHHHhhhcccccccccCCCcceeeeeccCCchhhhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 001630 6 GLPISPEKAYL---------REELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGF 76 (1042)
Q Consensus 6 ~~p~~~~~~~~---------~~~l~~I~~~w~~~~f~~~~~~l~~L~s~~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~F 76 (1042)
..|++.+...+ .+.++....+|..-.-..++-+-..|-......+.-+|.+. +..-..+...+..--+..
T Consensus 39 ~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka-~~~i~~~~~~l~~~e~~i 117 (560)
T PF06160_consen 39 NLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKA-KQAIKEIEEQLDEIEEDI 117 (560)
T ss_pred cCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcch
Q 001630 77 NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQ 156 (1042)
Q Consensus 77 n~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~ 156 (1042)
..-......++..=.+.+..|..+|+....+|+.|..++.....-+..=-+ +++.+-.--++.+.++.++.
T Consensus 118 ~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~---------~L~~ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 118 KEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEK---------QLENIEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHH---------HHHHHHHHHHHHHHHHHCCC
Q ss_pred hHHHHHHHhhhhhhhh--hcccccchhh
Q 001630 157 YYAAVQLHAQSALMLE--REGLQTVGAL 182 (1042)
Q Consensus 157 y~~A~~ll~~~~~~l~--~~~L~~i~aL 182 (1042)
|.+|.++|...-.-+. ..-+..||.|
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l 216 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKL 216 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 43
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.14 E-value=4e+02 Score=26.43 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=50.2
Q ss_pred cCCchhhhhhhhhhhhhHHHHH---HHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccch
Q 001630 44 SKDREGEVQILKDQNDIIEEVV---DEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (1042)
Q Consensus 44 s~~~~~~~~~l~~~~~~~~~~L---~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~ 115 (1042)
.+..+..++.|...+..++-.+ +-++..+..+--+-=..+..|...|...++.|..+|..|..||.....+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667776666666444 44455544444444555677788888999999999999999998877665
No 44
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.84 E-value=3.6e+02 Score=33.60 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh-------HHHH
Q 001630 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT-------LRHI 131 (1042)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~-------~~~~ 131 (1042)
+++.+.|+.+=-++-|..-.|=..-.++++.|.++-..+..+-+.|..|...|+.-|+++...-.+... -...
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 445555555555565665566666777888888888999999999999999888888877655433321 2233
Q ss_pred HHHH-HhhhcccccchHHHHHhhcchhHHHH------HHHhhhhhhhh----hcccccchhhhHHHHHhhhhhhhHHHHH
Q 001630 132 ISLL-DQIEGIAKVPARIEKLIAGKQYYAAV------QLHAQSALMLE----REGLQTVGALQDVRSELTKLRGVLFYKV 200 (1042)
Q Consensus 132 i~~L-~~ie~l~~vP~~ie~~i~~k~y~~A~------~ll~~~~~~l~----~~~L~~i~aL~~lr~~l~~q~~~L~d~L 200 (1042)
++=| .-|+.|. ||..=-+-+.+..|..|- .-..+|+.-+- .|.+.++.|.+|=|++|+..+..+.+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3355555 888777777777775552 22333333333 3456677999999999998888777777
Q ss_pred HHHHHH
Q 001630 201 LEDLHA 206 (1042)
Q Consensus 201 iEELh~ 206 (1042)
-+=|.+
T Consensus 355 ssfLnn 360 (867)
T KOG2148|consen 355 SSFLNN 360 (867)
T ss_pred HHHHHH
Confidence 666644
No 45
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=29.54 E-value=6.4e+02 Score=25.93 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=20.4
Q ss_pred hhcchhHHHHHHHhhhhhhhhhcccccchhhhHHH
Q 001630 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186 (1042)
Q Consensus 152 i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr 186 (1042)
-+++.|..+++.+.+........-+..+.+++++.
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678888888777766555543344444444333
No 46
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=26.35 E-value=6.8e+02 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=16.7
Q ss_pred hhhHHHHhhHHH-HHHHhhhhhhhhhhhhhhHHHHHHHh
Q 001630 74 TGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRL 111 (1042)
Q Consensus 74 ~~Fn~sI~sy~~-i~~~i~~sq~~i~~~k~~L~~~k~~L 111 (1042)
+.|...+.+|-. -+..|+..+.++..-|=.+-.||..+
T Consensus 118 ~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~ 156 (220)
T cd07617 118 INFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARL 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 33344444444444444444444444
No 47
>PRK11637 AmiB activator; Provisional
Probab=25.19 E-value=1.2e+03 Score=27.70 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=36.1
Q ss_pred hhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh
Q 001630 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (1042)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (1042)
......-.....+...|...+.++..+...+...+..|...++.|+++-....+
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666777777777777777778888887777777777655444443
No 48
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=2.6e+02 Score=26.54 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=51.9
Q ss_pred hHHHHHHHhhhhhhhhhhhh---hhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHH-----H-----hhhcccccchHH
Q 001630 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-----D-----QIEGIAKVPARI 148 (1042)
Q Consensus 82 sy~~i~~~i~~sq~~i~~~k---~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L-----~-----~ie~l~~vP~~i 148 (1042)
.|++++....++|.++..+- ..+.-++.-.+-.+.++-.+-.+...|..|-+++ . .-+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 47788888888888887654 4455566666666777777777777776665543 1 124566666677
Q ss_pred HHHhhcchhHH
Q 001630 149 EKLIAGKQYYA 159 (1042)
Q Consensus 149 e~~i~~k~y~~ 159 (1042)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 77766666654
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.81 E-value=5.8e+02 Score=31.34 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=10.1
Q ss_pred chhhhHHHHHhhhhhhhHHHHH
Q 001630 179 VGALQDVRSELTKLRGVLFYKV 200 (1042)
Q Consensus 179 i~aL~~lr~~l~~q~~~L~d~L 200 (1042)
+..|.+.+.+|+.+.+.|-+.+
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444444333
No 50
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.80 E-value=3.9e+02 Score=28.83 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=48.5
Q ss_pred HHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHhh
Q 001630 131 IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (1042)
Q Consensus 131 ~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~hL 208 (1042)
+-++..+...|-++-..||..-.+.....|...=..+++.+++ .+ +|.-+.+|..++..+-. ..+|+++.|
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e-----~~~EI~e~L 147 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYE-----DTQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3344455566666667777777788888888888888888888 66 78888777777665432 235555444
No 51
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.67 E-value=6.4e+02 Score=27.81 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhhhhhhHHH----HhhHHHHHHHhhhhhhhhhhhhhhHHH---------HHHHhc----cchhhhHHH
Q 001630 59 DIIEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKELKVDLAE---------AKRRLG----TRNKQLHQL 121 (1042)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~s----I~sy~~i~~~i~~sq~~i~~~k~~L~~---------~k~~L~----~~~~~L~~L 121 (1042)
+-+..+|..+..+|-+.|..+ -..|++++..+++++++|...|..... -+..|. .-...-++|
T Consensus 77 kTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkl 156 (242)
T cd07600 77 KTLNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKV 156 (242)
T ss_pred CcHHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888885 677899999999999988886554432 222222 113444566
Q ss_pred HHhhhhHHHHHHHHHhh---hcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhh
Q 001630 122 WYRSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (1042)
Q Consensus 122 ~~~s~~~~~~i~~L~~i---e~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q 192 (1042)
-.+...|+-+-.-+... ++--...+++| -++.+|..|++.-...+.-+ +.+..-++.|+.-++.|
T Consensus 157 e~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~i----l~~~e~i~~L~~fv~AQ 224 (242)
T cd07600 157 EDKRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEV----LDNPEPLQLLKELVKAQ 224 (242)
T ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHH----HhhhHHHHHHHHHHHHH
Confidence 77777777777666554 22222334444 47888888887666655555 23344566666555554
No 52
>PRK10869 recombination and repair protein; Provisional
Probab=23.48 E-value=2.2e+02 Score=35.39 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHhccchhhhH
Q 001630 87 LRLFSESAESIKELKVDLAEAKRRLGTRNKQLH 119 (1042)
Q Consensus 87 ~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~ 119 (1042)
+..+..-...+..+.+.|.++...|..-..+|.
T Consensus 253 l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~ 285 (553)
T PRK10869 253 LSELIGMDSKLSGVLDMLEEALIQIQEASDELR 285 (553)
T ss_pred HHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455555555554444444443
No 53
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=23.37 E-value=4.7e+02 Score=28.59 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHH---------H----hccchhhhHHHHHhh
Q 001630 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKR---------R----LGTRNKQLHQLWYRS 125 (1042)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~---------~----L~~~~~~L~~L~~~s 125 (1042)
..-...|..+.-+|-.+|... ..|+..+..+++++++|..++..+...-. . |..-....++|-.+.
T Consensus 68 ~~~~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rR 146 (229)
T cd07616 68 MNNPELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKR 146 (229)
T ss_pred CChHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888753 45788888888888888888877666511 1 222234566777777
Q ss_pred hhHHHHHHHHHh--hhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhh
Q 001630 126 VTLRHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (1042)
Q Consensus 126 ~~~~~~i~~L~~--ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q 192 (1042)
..|+..-.-+.. -++-+.+| .-|-..++-+|.++.+.-.....-+..- ++.-+..|+.-++.|
T Consensus 147 LdyD~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~~---~~e~~~~L~~lv~AQ 211 (229)
T cd07616 147 LDLDAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISST---HAHHLRCLNDFVEAQ 211 (229)
T ss_pred HHHHHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---ChHHHHHHHHHHHHH
Confidence 777777766653 33333333 2333447778888888877755544321 334455555545444
No 54
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.33 E-value=4.6e+02 Score=28.04 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=63.1
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhh
Q 001630 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (1042)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s 125 (1042)
...-+..|-+..+.+...+..........|...+.-|...+.++.+.=.+=..+-..+..+...|..++..+.+|-..+
T Consensus 80 l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 80 LSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455566666667777888888888888899999999999998888877777777888888888888888888877663
No 55
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.06 E-value=1.9e+02 Score=35.90 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHH-hhhcccccc
Q 001630 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVP 145 (1042)
Q Consensus 67 ~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~-~ie~l~~vP 145 (1042)
..++.--+...........++..=.+.+..|..+|..-...|+.|..++..+. ..+..|+ +++.+-.--
T Consensus 112 ~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G----------~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 112 SLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFG----------PALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----------chHHHHHHHHHHHHHHH
Confidence 33333344444444445555555556666666666666666666555554433 3333332 245555556
Q ss_pred hHHHHHhhcchhHHHHHHHhhhhhh
Q 001630 146 ARIEKLIAGKQYYAAVQLHAQSALM 170 (1042)
Q Consensus 146 ~~ie~~i~~k~y~~A~~ll~~~~~~ 170 (1042)
++.+.+..++.|.+|.+.|.+.-.-
T Consensus 182 ~~f~~l~~~Gd~~~A~e~l~~l~~~ 206 (569)
T PRK04778 182 SQFVELTESGDYVEAREILDQLEEE 206 (569)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7899999999999999988754433
No 56
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.03 E-value=2.2e+02 Score=30.13 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhh-hhhhcccccchhhh
Q 001630 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL-MLEREGLQTVGALQ 183 (1042)
Q Consensus 127 ~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~-~l~~~~L~~i~aL~ 183 (1042)
-.+.+|.++|.++...+....-+. .+.|...++++.+.+. .+.++++..|+++.
T Consensus 89 ~~~~LLpvlDnLerAl~~~~~~~~---~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~G 143 (191)
T PRK14140 89 LASDLLPALDNFERALQIEADDEQ---TKSLLKGVEMVHRQLLEALKKEGVEVIEAVG 143 (191)
T ss_pred HHHHHHHHHHHHHHHHhccCccch---HHHHHHHHHHHHHHHHHHHHHCCCEeeCCCC
Confidence 346777777777765544222111 1445555555444433 44555555555443
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.03 E-value=7.4e+02 Score=30.84 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=67.9
Q ss_pred hhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhh
Q 001630 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (1042)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~ 153 (1042)
+.++.....|+.+...+.+..+++..++..-.+-+..|..-+.+-.+.-..-.+++..+.-+...=+-..+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 45666666688888888888888888888877777777776666666666666666666555544344445554444443
Q ss_pred cchhHHHHHHHhhhhhhhhhcccccchhhh
Q 001630 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (1042)
Q Consensus 154 ~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~ 183 (1042)
.|-.+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 334555555555556655 555666655
No 58
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=22.74 E-value=82 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.1
Q ss_pred HHHHhhcchhHHHHHHHhhhhhhhhhcc
Q 001630 148 IEKLIAGKQYYAAVQLHAQSALMLEREG 175 (1042)
Q Consensus 148 ie~~i~~k~y~~A~~ll~~~~~~l~~~~ 175 (1042)
|++.++.++|-.|.+++..+++++...+
T Consensus 14 i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 14 IRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566678999999999999999998755
No 59
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.44 E-value=5.1e+02 Score=24.34 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=64.1
Q ss_pred hHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccc-hhhhHHHHHhhhhhhhH
Q 001630 118 LHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV-GALQDVRSELTKLRGVL 196 (1042)
Q Consensus 118 L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i-~aL~~lr~~l~~q~~~L 196 (1042)
+..|-....+++.+++-|..++.=..|+-.|-...-......|...|.+-...++. .+..+ ..+.++..++...+..|
T Consensus 22 ~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~-~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 22 RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIEL-RIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777777777778888888888888889999999998888888 77777 67888888888888777
Q ss_pred HHH
Q 001630 197 FYK 199 (1042)
Q Consensus 197 ~d~ 199 (1042)
.++
T Consensus 101 ~~~ 103 (105)
T cd00632 101 QQA 103 (105)
T ss_pred HHH
Confidence 665
No 60
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=22.30 E-value=1.3e+02 Score=35.34 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHHhccchhhhHHHHHhh------hhHHHHHHHHH-hhhcccccchHHHHHhhcchhHHHHHHHhhhhhh
Q 001630 99 ELKVDLAEAKRRLGTRNKQLHQLWYRS------VTLRHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (1042)
Q Consensus 99 ~~k~~L~~~k~~L~~~~~~L~~L~~~s------~~~~~~i~~L~-~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~ 170 (1042)
.+=++|+..-..|..+.++|+++...- ...+..+..+. .++.+.++=..|+.++.+..+..+.+-|++++..
T Consensus 290 ~lL~Nle~lt~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls~ 368 (370)
T PLN03094 290 GLLKEVEKLTRVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGDEATRRNLKQLIQSLSR 368 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 444555555555555566666652211 22222222222 3456667788999999999999999999888764
No 61
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=22.13 E-value=7.9e+02 Score=29.25 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=77.3
Q ss_pred hhhhhhhHHHHHHHH----H--HhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh
Q 001630 54 LKDQNDIIEEVVDEV----V--HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (1042)
Q Consensus 54 l~~~~~~~~~~L~~~----V--~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (1042)
|-..|+.|..+++.. . .++..-|.--..-=..+=.-+.+-++++..|......+++.|....+.+..++.....
T Consensus 215 Lt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~ 294 (412)
T PF04108_consen 215 LTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSE 294 (412)
T ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666522 1 2222223222223333334466677777777777777777777777777666554332
Q ss_pred HHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHh
Q 001630 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (1042)
Q Consensus 128 ~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~h 207 (1042)
+++.|+.+.+ ++- .|..+..-+.+-+.....+-...+..+.+|+........ -|+.|+-|++.-
T Consensus 295 ---~~~~l~~~~~------~l~------~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~-aY~~LL~Ev~RR 358 (412)
T PF04108_consen 295 ---ALEELRKFGE------RLP------SYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLS-AYDSLLLEVERR 358 (412)
T ss_pred ---HHHHHHHHHH------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 2222222222 222 233344444444443333455567777888877777765 677788888877
Q ss_pred hcc
Q 001630 208 LYN 210 (1042)
Q Consensus 208 LYl 210 (1042)
=+.
T Consensus 359 r~~ 361 (412)
T PF04108_consen 359 RAV 361 (412)
T ss_pred HHH
Confidence 654
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.98 E-value=9e+02 Score=32.63 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhHHHHHHHHHhhhcccccchHHHHHhhcchhH-HHHH
Q 001630 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYY-AAVQ 162 (1042)
Q Consensus 84 ~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~-~A~~ 162 (1042)
.+....+..+-+++..++..|.++...+....++.++|..-+..|..+|+.+.. +.+.+-++++.+...|.-+ ....
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~~d~l~~le~~k~~ls~~~~ 605 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDLEDKLSLLEESKSKLSKENK 605 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 555667778888899999999999999999999999999999999998887766 6777777777776654332 2222
Q ss_pred HHhhhhhhhhhcccccchhhhHHHHHhhhhhhhHHHHHHHHHHHhh
Q 001630 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (1042)
Q Consensus 163 ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LiEELh~hL 208 (1042)
.+........+..-...+...+++..+...+..+-..-.+++.-..
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 2222222222223333345555565555555555444444443333
No 63
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=21.66 E-value=5.8e+02 Score=27.36 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=59.6
Q ss_pred hhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhhH---HHHHHHHHhhhcccccchHHHH
Q 001630 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL---RHIISLLDQIEGIAKVPARIEK 150 (1042)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~~---~~~i~~L~~ie~l~~vP~~ie~ 150 (1042)
+-+++-++-+-.....+.+.--++...+..|..++..|+..+..+.+--..+..+ ..+-....+++.|+.+|+.+++
T Consensus 24 ~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et 103 (204)
T COG5491 24 QVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFET 103 (204)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667676666666666999999999999999999877776555444444 4455667789999999999988
Q ss_pred Hh
Q 001630 151 LI 152 (1042)
Q Consensus 151 ~i 152 (1042)
..
T Consensus 104 ~~ 105 (204)
T COG5491 104 QF 105 (204)
T ss_pred HH
Confidence 66
No 64
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=20.55 E-value=1.2e+02 Score=23.65 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.7
Q ss_pred hhhhHHHHHhhcCcHHHHHHHHhhcccccChHhhhhhh
Q 001630 982 LDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 1019 (1042)
Q Consensus 982 l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 1019 (1042)
|+..+.||++=..+++++-..+.-+ ..|.+||+.+.
T Consensus 1 f~~iK~~Y~~g~~t~~~v~~~V~~g--~IT~eey~eIT 36 (40)
T PF09693_consen 1 FEDIKRYYDWGLYTKEDVKNFVEAG--WITKEEYKEIT 36 (40)
T ss_pred ChHHHHHHHcCCCCHHHHHHHhhcC--eECHHHHHHhh
Confidence 4678999999888999988887774 68999998764
No 65
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.51 E-value=1.2e+03 Score=25.80 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=76.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHh----ccchhhhHHHHH
Q 001630 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL----GTRNKQLHQLWY 123 (1042)
Q Consensus 48 ~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L----~~~~~~L~~L~~ 123 (1042)
+.+...|....+.+......+...--+--+.+-.++.......+..+.-...|++-+..+...= ....++|.+.
T Consensus 51 e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~-- 128 (264)
T PF06008_consen 51 EKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA-- 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH--
Confidence 3445555555555555555555444444455555555444443333333333333333332211 1223333332
Q ss_pred hhhhHHHHHHHHHhhhcccccchHHHHHhhcchhHHHHHHHhhhhhhhhhcccccchhh-hHHHHHhhhhhhhHHH
Q 001630 124 RSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGAL-QDVRSELTKLRGVLFY 198 (1042)
Q Consensus 124 ~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL-~~lr~~l~~q~~~L~d 198 (1042)
.+++-.+|..|..-. =.-..-.++....+|..||.+.-..+.+ .-..-.+| ..++..|......|-|
T Consensus 129 ----l~ea~~mL~emr~r~---f~~~~~~Ae~El~~A~~LL~~v~~~~~~-~~~~~~~l~~~i~~~L~~~~~kL~D 196 (264)
T PF06008_consen 129 ----LAEAQRMLEEMRKRD---FTPQRQNAEDELKEAEDLLSRVQKWFQK-PQQENESLAEAIRDDLNDYNAKLQD 196 (264)
T ss_pred ----HHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554443 2223456778889999999988888877 44455555 7788888887777765
No 66
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.40 E-value=7.8e+02 Score=28.64 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHhccchhhhHHHHHhhhh
Q 001630 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (1042)
Q Consensus 59 ~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~~k~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (1042)
+.+-..+...+..+...||..|.+-.++...+++-.+.|..+=.++...-..+..+.+++.++-.....
T Consensus 161 ~~~l~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~ 229 (359)
T COG1463 161 NAILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLAT 229 (359)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555666677888999999999999999999999998888888888888888888887776655433
Done!