Query 001630
Match_columns 1042
No_of_seqs 150 out of 207
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 15:51:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001630.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_929-933//hhsearch_pdb/001630hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 1.0 1 1 34.7 5.6 71 136-206 13-87 (235)
2 3n1e_A Vacuolar protein sortin 1.0 1 1 34.6 0.7 120 847-973 8-129 (141)
3 2fji_1 Exocyst complex compone 1.0 1 1 29.2 3.4 329 621-1021 8-350 (399)
4 2a2f_X Exocyst complex compone 1.0 1 1 29.0 0.0 89 881-970 202-292 (325)
5 3fhn_A Protein transport prote 1.0 1 1 26.5 2.5 157 846-1016 501-671 (706)
6 3hr0_A COG4; conserved oligome 1.0 1 1 24.0 2.8 32 74-105 13-44 (263)
7 3k8p_C DSL1, KLLA0C02695P; int 1.0 1 1 15.8 2.9 11 498-508 170-180 (357)
8 2qjz_A Microtubule-associated 1.0 1 1 15.0 0.4 22 950-971 55-76 (123)
9 3ghg_A Fibrinogen alpha chain; 1.0 1 1 14.5 8.4 26 169-194 159-184 (562)
10 3oa7_A Head morphogenesis prot 1.0 1 1 13.8 12.3 141 46-212 20-162 (206)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=34.67 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=57.7
Q ss_pred HHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73101124505799874100257898997653455520000----000134677888662223678999889988
Q 001630 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (1042)
Q Consensus 136 ~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L----~~i~aL~~lr~~l~~q~~~L~d~LieELh~ 206 (1042)
+.+..+...||.++-+|+.++|-+|++++.+.-..+.+-.- .+..++..++..+..++..|.+.|++||..
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~ 87 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS 87 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 047888716298899999976999999999999998728444565536789999999999999999999999870
No 2
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=34.57 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCE
Q ss_conf 53224499986844336765542121344555201344434544677898854676211111234344321563100205
Q 001630 847 RDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYI 926 (1042)
Q Consensus 847 ~~f~~i~~~f~~La~~~Ll~LrlEiR~~~iy~L~~~~~~~y~~~~e~~EpD~~I~~Ln~eL~~~de~ls~~L~~~e~~fI 926 (1042)
..||.+.+.|++=...+.-=|--=+.-+..-++. +|-. .+..|.|+.-.|.+++..+++.++..||+...+.|
T Consensus 8 ~efDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~--k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~I 80 (141)
T 3n1e_A 8 RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEV--KAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQML 80 (141)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCC--CSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9898999999999999999999999989999998-----7255--89989989999999999999998832999999999
Q ss_pred ECCHHHCCCCCCHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHCCCC
Q ss_conf 02110001000027742036543145788--754457999998427888
Q 001630 927 FGGICGIAANASIKALADMKNINLFGVQQ--ICRNSIALEQALAAIPSI 973 (1042)
Q Consensus 927 F~GL~~li~~~lI~~~~~i~~iN~~GvkK--m~rNI~aLQQ~LknI~~~ 973 (1042)
|.-+=.-...-|-.....+..-|..|-++ |.+.+.-.+++|++|-+-
T Consensus 81 m~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~ 129 (141)
T 3n1e_A 81 FLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGL 129 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999986887877630027899999999986246899
No 3
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=29.17 Aligned_cols=329 Identities=11% Similarity=0.049 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC-CCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 15788897642045552101256678886228-75555-56543332144312576310236788877888854432000
Q 001630 621 GLLAFVENFVKDHLLPTMFVDYRKGVQQAISS-PAAFR-PRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMP 698 (1042)
Q Consensus 621 ~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~-~daf~-~~~~~~~~~~~~~~~~rPIlk~t~~~~~~~~~l~~ml~t~p 698 (1042)
.....+++|+.. +..++.+-++.++.. ...|. ....+.. -..+.....+++.+++++.+-.....++-
T Consensus 8 ~~~~L~~~Y~~~-----i~~~~~eW~~nil~~E~~~w~~r~~~P~~-----d~~g~~~t~~~~dvfqml~eql~~a~~~~ 77 (399)
T 2fji_1 8 EKETLFKDYLNL-----IVVKMTEWIGNLEKAEFDVFLERSTPPHS-----DSDGLLFLDGTKTCFQMFTQQVEVAAGTN 77 (399)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCSCCEE-----CTTSCEECHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 599999999999-----99999999999999999998846899986-----99988528864799999999999998479
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1--47779999999999989998767999998420000112101346540587877778998787778887787420315
Q 001630 699 K--FAADLVKYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLEPASASLPNGQLDSVSSVNDAETPGVESE 776 (1042)
Q Consensus 699 ~--Y~~~~~~li~~~L~~y~~~c~~~y~~lv~~~~s~~~~~~~d~~~ll~~~~~~~~l~~~~~~~~~~~~~~~l~e~E~~ 776 (1042)
. .-..+...++..|..|...|...+.+-..+-.+. + + ..++. |. .+. ++ .. ..... .|..
T Consensus 78 ~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~---~-~---~~~~~-~~--~~~-~~----~~-~~~~~--~e~l 139 (399)
T 2fji_1 78 QAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINY---N-H---KYDID-PE--SIT-PE----DE-CPGGL--VEYL 139 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-H---TTTTG-GG--SCC-TT----TC-CCSCH--HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C-C---CCCCC-CC--CCC-CC----CC-CCCCH--HHHH
T ss_conf 7300999999999999999999999999999987520---1-0---00124-22--247-65----45-65418--7865
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88753015444333443358717874212201578698999974332201200114678877788899975322449998
Q 001630 777 LRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEY 856 (1042)
Q Consensus 777 l~~~~~~~~~i~~~dli~d~~~l~~La~L~~SL~Wl~~~i~~L~~~~~~~~~~~~~~~~~~~~r~~~~~~~~f~~i~~~f 856 (1042)
....|.|. =+...+..|.+......... .. ......|+.+...|
T Consensus 140 --iA~~Nn~~------------------------~~~e~~~~l~~~~~~~~~~~-------~~---~~~~~~l~~~~~~f 183 (399)
T 2fji_1 140 --IAVSNDQM------------------------KAADYAVAISSKYGKLVSKV-------YE---KQITNHLEGTLDGF 183 (399)
T ss_dssp --HHHHHHHH------------------------HHHHHHHHHHHHHHTTSCHH-------HH---HHHHHHHHTTHHHH
T ss_pred --HHHHCCHH------------------------HHHHHHHHHHHHHHHHCCHH-------HH---HHHHHHHHHHHHHH
T ss_conf --66554488------------------------89999999999999862677-------88---88899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCEECCHHHCCCC
Q ss_conf 68443367655421213445552013444345446778988546762111112343443215631002050211000100
Q 001630 857 RKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAAN 936 (1042)
Q Consensus 857 ~~La~~~Ll~LrlEiR~~~iy~L~~~~~~~y~~~~e~~EpD~~I~~Ln~eL~~~de~ls~~L~~~e~~fIF~GL~~li~~ 936 (1042)
.+++..|+..|-=.+=..+=-++..++...|..+. .+-.+...+..+=.-+..+|.+.-+..+..-+-..+-.
T Consensus 184 ~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~ 256 (399)
T 2fji_1 184 AEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETII 256 (399)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999889999985770300876-------79999999999999999980869999999999999999
Q ss_pred CCHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHCCCH-HHHHHHHHH---C
Q ss_conf 0027742036543---145788754457999998427888889---99987555677999615829-999989851---1
Q 001630 937 ASIKALADMKNIN---LFGVQQICRNSIALEQALAAIPSIDSE---AVRRRLDRVRTYYELLNMPF-EALLAFVTE---H 1006 (1042)
Q Consensus 937 ~lI~~~~~i~~iN---~~GvkKm~rNI~aLQQ~LknI~~~~~~---~v~~~l~rar~yyeL~~~~~-~~ll~~i~e---~ 1006 (1042)
-.+.....=.+++ ..|..||.+++-+|.+-+..+...... -+...+.+....=+ +..++ +.+...+.. .
T Consensus 257 ~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ 335 (399)
T 2fji_1 257 KFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEV 335 (399)
T ss_dssp HHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHH
T ss_conf 999998467777840599999999999999999998556532025778779999999997-3689577799999999986
Q ss_pred CCCCCHHHHHHHHCC
Q ss_conf 346576765311123
Q 001630 1007 ENLFTTTEYASLLKV 1021 (1042)
Q Consensus 1007 ~~~Fs~~Ey~~ll~L 1021 (1042)
=+..+.+...++|.+
T Consensus 336 ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 336 YWDSRIDLLVGILKC 350 (399)
T ss_dssp CTTCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 899999999999982
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=29.05 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCC-EECCHHHCCCCCCHHHH-HCCCCCCHHHHHHHHH
Q ss_conf 134443454467789885467621111123434432156310020-50211000100002774-2036543145788754
Q 001630 881 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNY-IFGGICGIAANASIKAL-ADMKNINLFGVQQICR 958 (1042)
Q Consensus 881 ~~~~~~y~~~~e~~EpD~~I~~Ln~eL~~~de~ls~~L~~~e~~f-IF~GL~~li~~~lI~~~-~~i~~iN~~GvkKm~r 958 (1042)
.+..-+|.+....++|+.+|.+|..-|..+=.. -..||+.-+.. +|.-+.|+.+.++=--. ..+|+||.+||+.+-.
T Consensus 202 ~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~ 280 (325)
T 2a2f_X 202 ELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINL 280 (325)
T ss_dssp TTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
T ss_conf 760368878889998568999999999999999-8739999999999999999999999986486114329999998999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 457999998427
Q 001630 959 NSIALEQALAAI 970 (1042)
Q Consensus 959 NI~aLQQ~LknI 970 (1042)
+|-.|.+-.++-
T Consensus 281 Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 281 DLMQCEFFAASE 292 (325)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998727
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=26.47 Aligned_cols=157 Identities=11% Similarity=0.174 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCC--------CCCCCEEEEECCCCCCCCC
Q ss_conf 75322449998684433-6765----542121344555201344434544677--------8988546762111112343
Q 001630 846 SRDLASFADEYRKLAID-CLKV----LRVEMQLETIFHLQEMTSRDYLEDQDA--------EEPDDFIISLTSQITRRDE 912 (1042)
Q Consensus 846 ~~~f~~i~~~f~~La~~-~Ll~----LrlEiR~~~iy~L~~~~~~~y~~~~e~--------~EpD~~I~~Ln~eL~~~de 912 (1042)
..-||..+..|+.|..+ .+-. +.-|++-.+=-|.. ...|....+. .-|.+.++..-+-|...=.
T Consensus 501 gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k---~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~ 577 (706)
T 3fhn_A 501 NSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK---ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLIN 577 (706)
T ss_dssp SCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHH---CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7608999999999998889999999999999999987748---1668566787766655568898889999999999999
Q ss_pred CCCHH-HHHHHCCCEECCHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44321-56310020502110001000027742036543145788754457999998427888889999875556779996
Q 001630 913 EMAPF-IAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYEL 991 (1042)
Q Consensus 913 ~ls~~-L~~~e~~fIF~GL~~li~~~lI~~~~~i~~iN~~GvkKm~rNI~aLQQ~LknI~~~~~~~v~~~l~rar~yyeL 991 (1042)
.|... |+..-..-|+..+..-++..|..+.-.-.+.|..|+.+++..+-+|-..+. +....+ +..|.+.+..--|
T Consensus 578 ~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~~~---~~~~~~L~E~l~L 653 (706)
T 3fhn_A 578 KLDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSHAT---NYKCMSLHELVKI 653 (706)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTTCC---CHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHH
T ss_conf 999813777899999999999999999999986086488889999999999999856-888414---5677999999998
Q ss_pred HCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 1582999998985113465767653
Q 001630 992 LNMPFEALLAFVTEHENLFTTTEYA 1016 (1042)
Q Consensus 992 ~~~~~~~ll~~i~e~~~~Fs~~Ey~ 1016 (1042)
+.++. ..+...|+..+|.
T Consensus 654 L~L~~-------d~~~~~f~~~~y~ 671 (706)
T 3fhn_A 654 LKLKY-------DPNNQQFLNPEYI 671 (706)
T ss_dssp HGGGG-------CGGGTTTTSHHHH
T ss_pred CCCCC-------CCCHHHHHHHHHH
T ss_conf 17988-------7422067789887
No 6
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32579975299999973231222544661199
Q 001630 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (1042)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~sq~~i~~ik~~L~ 105 (1042)
..+...+.+|-..++.+..|.+-+..+++.+.
T Consensus 13 ~~~e~~~~~Flv~LNnld~s~eyi~rL~~~l~ 44 (263)
T 3hr0_A 13 ESTDEAKMSFLVTLNNVEVCSENISTLKKTLE 44 (263)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHEECCHHHHHHHHHHHHHHHH
T ss_conf 98578885673022659999999999999998
No 7
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=1.00 E-value=1 Score=15.77 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999840
Q 001630 498 CQQLICEILRA 508 (1042)
Q Consensus 498 i~~LL~~YL~~ 508 (1042)
++-|-.+||..
T Consensus 170 l~EL~~~~le~ 180 (357)
T 3k8p_C 170 LMELNSRRLDL 180 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 8
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=1.00 E-value=1 Score=15.02 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1457887544579999984278
Q 001630 950 LFGVQQICRNSIALEQALAAIP 971 (1042)
Q Consensus 950 ~~GvkKm~rNI~aLQQ~LknI~ 971 (1042)
.++--++..|+-.||++++..-
T Consensus 55 a~~e~e~~~N~k~lq~af~k~g 76 (123)
T 2qjz_A 55 AKLEHEYIQNFKILQAGFKRMG 76 (123)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9983999999999999999829
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=1.00 E-value=1 Score=14.48 Aligned_cols=26 Identities=4% Similarity=-0.052 Sum_probs=12.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55520000000134677888662223
Q 001630 169 LMLEREGLQTVGALQDVRSELTKLRG 194 (1042)
Q Consensus 169 ~~l~~~~L~~i~aL~~lr~~l~~q~~ 194 (1042)
+.+.++.=..+.---|++.|-..|++
T Consensus 159 rsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 159 RSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp HHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred HHCCCCCCCHHEEECCHHHHHHHHHH
T ss_conf 76105211201011145778999999
No 10
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=1.00 E-value=1 Score=13.77 Aligned_cols=141 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Q ss_conf 701223352000236999999999964232579975299999973231222544661199999870311--134678888
Q 001630 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR--NKQLHQLWY 123 (1042)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~L~~~V~~h~~~Fn~sI~sy~~i~~~i~~sq~~i~~ik~~L~~~k~~L~~~--~~~L~~L~~ 123 (1042)
++|-+-.+--+..+++...+..+|.++ ++..+++.. .+....++|++|..-++....+ =+.+++..-
T Consensus 20 ~~~~~~~~~~~~~~~~~a~~~s~~s~~-~dl~~s~~~----------l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p 88 (206)
T 3oa7_A 20 DPELAQSERTEALQQLRVNYGSFVSEY-NDLTKSHNT----------LSKELDNLRSRFGNLEGNTSERITIKNILQSRP 88 (206)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHHHHHCCCCHHHCCCHHHHHHCCC
T ss_conf 876542578999999999999999888-788888999----------996799999999872498886007999950176
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65469999998873101124505799874100257898997653455520000000134677888662223678999889
Q 001630 124 RSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLED 203 (1042)
Q Consensus 124 ~s~~~~~~i~~L~~ie~l~~vP~~ie~~i~~k~y~~A~~ll~~~~~~l~~~~L~~i~aL~~lr~~l~~q~~~L~d~LieE 203 (1042)
.--+-.+--=.+|+|+.+ ...+-+.++.+-.-.++- ++..+..--++-.-.-..|..+.-..+-+
T Consensus 89 ~i~ke~Y~~L~Vd~Vd~l--------------dLVqLQNiiKniillleI-Pf~KL~kKlPLiaI~LrYEk~lL~~FaNr 153 (206)
T 3oa7_A 89 DISAEECNFLMVEQIDSA--------------NLTTLQNTVKEIVLAVGI-PYPKLRRKIPLLAIKLKYENIMLSNFAQR 153 (206)
T ss_dssp TCCHHHHHHHTGGGGGGC--------------CHHHHHHHHHHHHHHHTC-CGGGHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCC--------------CHHHHHHHHHHHHHHHCC-CHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 548999864374400221--------------299999999999986107-48897301553246899878899999999
Q ss_pred HHHHHCCCC
Q ss_conf 988520457
Q 001630 204 LHAHLYNRG 212 (1042)
Q Consensus 204 Lh~hLYlKs 212 (1042)
||.++|.+.
T Consensus 154 Lh~~~y~e~ 162 (206)
T 3oa7_A 154 LHRQVYSQE 162 (206)
T ss_dssp HHHHHC--C
T ss_pred HHHHHHCCC
T ss_conf 999995684
Done!