BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001632
         (1041 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 30.0 bits (66), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 44/104 (42%)

Query: 273 IDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISL 332
            D+++QM+   V P + T+T      V     E A     +MK+ G  P   +Y   +  
Sbjct: 90  FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149

Query: 333 SIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSK 376
             + G +D+A  +   M    ++P     A+LL +    +N  K
Sbjct: 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193


>pdb|3JYS|A Chain A, Crystal Structure Of Susd Superfamily Protein
           (Yp_001298690.1) From Bacteroides Vulgatus Atcc 8482 At
           2.00 A Resolution
          Length = 499

 Score = 30.0 bits (66), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 664 EVTASLIGSYGKHQKLKEAQDVFKAATVSC--KPGKLVLRSMIDAYAKCGKAEDVYLLYK 721
           ++T+S+ G++       E   VFK + ++   +PGK  L   +D      +  D+YL Y 
Sbjct: 332 DITSSVSGTF-----ETEGWSVFKFSNLNSNGQPGKNTL--WVDTDFPXFRLGDIYLXYA 384

Query: 722 EATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN 762
           EA A+G      +    +N L      +    I  N  ++N
Sbjct: 385 EAVARGGEGSKASAVEYINALRKRAYGDDKHNISENWLEEN 425


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 30.0 bits (66), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNES 952
            Y +L  A  E    +EAE+  N+  +   P     +N+L +   + G + EA R+Y ++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 953 LAAGIIPDLACYRTMLKGYM-DHGYIEEGINLFEEV 987
           L   + P+ A   + L   +   G ++E +  ++E 
Sbjct: 332 LE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365


>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
           Tail Indicating Conformational Plasticity
          Length = 533

 Score = 29.6 bits (65), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 750 QAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGR--KLDKALE 807
           +A I+   S QD   LD   +N  IK +  A +L   +   +  L   + +  K+D+A+E
Sbjct: 420 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 479

Query: 808 MFNTARSLGLSLDEK 822
           +F  +  L  ++DEK
Sbjct: 480 LFEDSAILARTMDEK 494


>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
           Fragment
 pdb|3FP3|A Chain A, Crystal Structure Of Tom71
 pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
           Fragment
          Length = 537

 Score = 29.6 bits (65), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 750 QAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGR--KLDKALE 807
           +A I+   S QD   LD   +N  IK +  A +L   +   +  L   + +  K+D+A+E
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483

Query: 808 MFNTARSLGLSLDEK 822
           +F  +  L  ++DEK
Sbjct: 484 LFEDSAILARTMDEK 498


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,962,892
Number of Sequences: 62578
Number of extensions: 1102404
Number of successful extensions: 2658
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2655
Number of HSP's gapped (non-prelim): 21
length of query: 1041
length of database: 14,973,337
effective HSP length: 109
effective length of query: 932
effective length of database: 8,152,335
effective search space: 7597976220
effective search space used: 7597976220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)