Query 001632
Match_columns 1041
No_of_seqs 705 out of 3591
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-82 2.4E-87 772.7 77.0 686 180-1038 48-737 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.8E-78 8.3E-83 733.0 74.6 748 148-1036 52-820 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.4E-65 1.6E-69 599.0 68.9 537 217-891 369-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.3E-64 5E-69 594.8 69.4 422 150-575 373-797 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.8E-58 8.3E-63 544.2 53.0 484 392-1038 86-574 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.1E-57 1.5E-61 533.4 56.8 397 149-557 89-487 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-45 7.4E-50 460.1 105.5 819 153-1023 62-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-44 5.6E-49 452.2 104.1 823 153-1027 28-869 (899)
9 PRK11447 cellulose synthase su 100.0 4.8E-26 1E-30 283.7 81.4 667 153-953 34-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-26 2.2E-31 289.7 74.1 654 221-1023 31-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.2E-24 4.8E-29 254.5 74.4 224 798-1029 521-745 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3.9E-24 8.5E-29 252.4 72.2 628 335-1025 56-707 (987)
13 KOG2002 TPR-containing nuclear 100.0 1E-21 2.3E-26 214.4 64.5 688 182-1027 40-801 (1018)
14 KOG2002 TPR-containing nuclear 99.9 3.3E-19 7.1E-24 195.2 61.4 568 339-1024 146-745 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.2E-21 4.9E-26 200.3 38.1 308 675-1013 196-508 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 9.7E-21 2.1E-25 195.6 33.6 331 665-1025 152-486 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-17 3.1E-22 195.1 51.0 257 710-994 307-575 (615)
18 KOG2076 RNA polymerase III tra 99.8 3.2E-14 6.9E-19 155.8 62.9 545 157-762 149-735 (895)
19 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 188.6 35.0 297 707-1030 45-353 (389)
20 PRK15174 Vi polysaccharide exp 99.8 7.3E-17 1.6E-21 187.8 41.8 335 633-995 43-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 4.4E-16 9.6E-21 185.6 49.4 334 669-1024 89-456 (765)
22 PRK10049 pgaA outer membrane p 99.8 5.6E-16 1.2E-20 184.7 50.2 305 669-998 122-464 (765)
23 KOG4318 Bicoid mRNA stability 99.8 8.1E-15 1.8E-19 158.9 53.3 763 177-1016 19-864 (1088)
24 KOG0495 HAT repeat protein [RN 99.8 2.8E-13 6.1E-18 142.2 62.1 613 302-1026 265-882 (913)
25 PRK15174 Vi polysaccharide exp 99.8 3.1E-16 6.7E-21 182.6 45.1 265 664-955 111-381 (656)
26 PRK11788 tetratricopeptide rep 99.8 4.4E-17 9.5E-22 181.7 36.4 66 501-568 286-354 (389)
27 TIGR00990 3a0801s09 mitochondr 99.8 3.3E-15 7.1E-20 175.2 53.1 435 186-726 130-571 (615)
28 KOG2076 RNA polymerase III tra 99.8 2.1E-13 4.5E-18 149.5 61.1 660 261-1026 147-851 (895)
29 PRK14574 hmsH outer membrane p 99.8 4.3E-15 9.3E-20 172.6 51.3 194 827-1021 298-510 (822)
30 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.8E-19 166.7 53.5 205 791-998 297-521 (822)
31 KOG0495 HAT repeat protein [RN 99.8 4E-12 8.6E-17 133.7 63.9 621 232-1003 265-893 (913)
32 KOG4318 Bicoid mRNA stability 99.8 9.3E-14 2E-18 150.9 53.0 733 204-1009 11-828 (1088)
33 KOG4422 Uncharacterized conser 99.8 4.1E-14 8.8E-19 140.9 43.3 333 230-582 127-483 (625)
34 KOG2003 TPR repeat-containing 99.8 4.1E-15 8.9E-20 148.5 34.8 491 430-1010 203-709 (840)
35 KOG4422 Uncharacterized conser 99.8 9.5E-14 2.1E-18 138.3 42.0 346 215-564 204-593 (625)
36 KOG2003 TPR repeat-containing 99.7 4.3E-14 9.3E-19 141.4 34.9 137 217-355 200-341 (840)
37 KOG3616 Selective LIM binding 99.7 3.1E-11 6.8E-16 128.1 55.4 98 929-1029 1295-1396(1636)
38 KOG0985 Vesicle coat protein c 99.6 1.2E-09 2.6E-14 120.5 58.5 228 176-418 506-749 (1666)
39 KOG0547 Translocase of outer m 99.6 1.5E-11 3.3E-16 125.3 39.0 220 796-1022 336-564 (606)
40 PF13429 TPR_15: Tetratricopep 99.6 2.5E-15 5.4E-20 157.7 12.7 219 799-1023 57-276 (280)
41 KOG0985 Vesicle coat protein c 99.6 1.2E-08 2.6E-13 112.9 63.0 784 185-1021 362-1305(1666)
42 KOG3616 Selective LIM binding 99.6 2.4E-08 5.2E-13 106.7 61.9 527 400-1021 713-1351(1636)
43 KOG1915 Cell cycle control pro 99.6 3.4E-09 7.3E-14 107.9 51.8 163 180-349 70-233 (677)
44 KOG1915 Cell cycle control pro 99.6 5.7E-09 1.2E-13 106.3 52.9 36 691-726 316-351 (677)
45 KOG1126 DNA-binding cell divis 99.6 6.3E-13 1.4E-17 141.4 24.6 203 818-1026 418-622 (638)
46 KOG1155 Anaphase-promoting com 99.6 1.3E-10 2.7E-15 118.0 39.2 290 706-1023 236-535 (559)
47 KOG2047 mRNA splicing factor [ 99.6 7.1E-08 1.5E-12 102.3 63.7 575 254-991 103-723 (835)
48 PRK10747 putative protoheme IX 99.5 2.2E-11 4.8E-16 133.7 33.2 218 797-1022 164-388 (398)
49 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.4E-16 134.2 33.8 287 710-1023 97-398 (409)
50 KOG4162 Predicted calmodulin-b 99.5 2.8E-08 6.1E-13 108.1 54.7 310 680-1023 461-782 (799)
51 KOG2047 mRNA splicing factor [ 99.5 5.9E-08 1.3E-12 102.9 54.7 540 466-1022 105-685 (835)
52 PF13429 TPR_15: Tetratricopep 99.5 1.2E-13 2.6E-18 145.0 13.1 187 799-990 90-277 (280)
53 KOG0547 Translocase of outer m 99.5 1.3E-09 2.8E-14 111.6 40.1 56 364-421 121-177 (606)
54 KOG1155 Anaphase-promoting com 99.5 5.5E-09 1.2E-13 106.4 44.1 314 669-1026 233-555 (559)
55 KOG1173 Anaphase-promoting com 99.5 1.9E-09 4.2E-14 112.7 42.0 288 694-1006 241-534 (611)
56 TIGR00540 hemY_coli hemY prote 99.5 2.1E-10 4.5E-15 126.9 34.8 230 670-954 160-398 (409)
57 KOG1156 N-terminal acetyltrans 99.4 1.7E-07 3.7E-12 100.0 52.7 585 370-1023 19-687 (700)
58 PRK10747 putative protoheme IX 99.4 6.2E-10 1.3E-14 122.3 35.9 284 266-560 97-389 (398)
59 KOG1126 DNA-binding cell divis 99.4 3.1E-11 6.7E-16 128.7 23.2 291 677-996 333-626 (638)
60 KOG2376 Signal recognition par 99.4 4.4E-09 9.6E-14 110.5 37.4 403 603-1021 16-517 (652)
61 KOG3785 Uncharacterized conser 99.4 1.1E-08 2.4E-13 100.2 37.0 190 795-990 294-490 (557)
62 KOG1173 Anaphase-promoting com 99.4 3.7E-09 8E-14 110.6 35.4 495 461-1024 14-518 (611)
63 KOG1156 N-terminal acetyltrans 99.4 5.2E-09 1.1E-13 111.3 36.8 413 610-1031 18-475 (700)
64 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.3E-14 106.3 28.4 225 336-562 48-279 (389)
65 KOG3617 WD40 and TPR repeat-co 99.4 2.3E-07 5E-12 100.9 48.4 249 192-490 737-994 (1416)
66 TIGR02521 type_IV_pilW type IV 99.4 2.9E-10 6.2E-15 116.9 26.1 202 819-1023 29-231 (234)
67 KOG3785 Uncharacterized conser 99.4 1.4E-07 3.1E-12 92.6 42.2 166 669-894 329-497 (557)
68 COG2956 Predicted N-acetylgluc 99.3 2E-09 4.3E-14 104.5 28.5 295 710-1026 48-349 (389)
69 KOG1127 TPR repeat-containing 99.3 1.3E-06 2.9E-11 97.7 52.9 274 682-1003 952-1236(1238)
70 PRK12370 invasion protein regu 99.3 3.2E-10 7E-15 130.4 26.3 177 837-1021 320-499 (553)
71 KOG4162 Predicted calmodulin-b 99.3 3E-07 6.5E-12 100.3 46.5 358 658-1026 318-751 (799)
72 COG3071 HemY Uncharacterized e 99.3 6.4E-09 1.4E-13 104.6 31.4 285 710-1022 97-388 (400)
73 COG3071 HemY Uncharacterized e 99.3 6.3E-08 1.4E-12 97.6 38.4 287 266-561 97-390 (400)
74 KOG3617 WD40 and TPR repeat-co 99.3 1.3E-07 2.8E-12 102.8 42.6 84 463-560 912-995 (1416)
75 PRK12370 invasion protein regu 99.3 7.3E-10 1.6E-14 127.5 27.0 226 799-1035 317-546 (553)
76 KOG1174 Anaphase-promoting com 99.3 7.9E-08 1.7E-12 96.5 36.4 280 690-999 225-509 (564)
77 KOG1127 TPR repeat-containing 99.3 1.1E-05 2.3E-10 90.7 55.6 658 304-1003 474-1188(1238)
78 KOG1840 Kinesin light chain [C 99.3 2.7E-09 5.9E-14 115.9 27.2 202 824-1025 244-480 (508)
79 TIGR02521 type_IV_pilW type IV 99.2 4.4E-09 9.5E-14 108.1 26.4 192 795-990 40-232 (234)
80 KOG2376 Signal recognition par 99.2 2.5E-07 5.5E-12 97.7 38.4 147 836-986 356-516 (652)
81 KOG1129 TPR repeat-containing 99.2 1.2E-09 2.7E-14 105.6 19.0 218 801-1024 238-458 (478)
82 KOG1840 Kinesin light chain [C 99.2 9.2E-09 2E-13 111.8 25.4 254 694-988 196-477 (508)
83 KOG0548 Molecular co-chaperone 99.2 3.1E-07 6.7E-12 96.3 35.2 104 366-473 10-114 (539)
84 COG3063 PilF Tfp pilus assembl 99.2 2.6E-09 5.6E-14 99.1 17.8 195 823-1021 37-233 (250)
85 KOG1129 TPR repeat-containing 99.2 5.7E-09 1.2E-13 101.1 20.9 240 388-726 218-458 (478)
86 PRK11189 lipoprotein NlpI; Pro 99.1 2.2E-08 4.7E-13 105.2 25.4 200 785-994 63-269 (296)
87 KOG1174 Anaphase-promoting com 99.1 2.3E-06 4.9E-11 86.4 36.5 224 796-1026 276-502 (564)
88 PF12569 NARP1: NMDA receptor- 99.1 2.2E-07 4.7E-12 102.8 32.9 291 670-989 11-333 (517)
89 PF13041 PPR_2: PPR repeat fam 99.1 3.1E-10 6.6E-15 82.0 6.7 47 217-263 2-48 (50)
90 KOG0624 dsRNA-activated protei 99.1 7.9E-07 1.7E-11 87.3 31.1 319 667-1000 42-380 (504)
91 PF13041 PPR_2: PPR repeat fam 99.1 3.9E-10 8.4E-15 81.4 6.5 49 251-299 1-49 (50)
92 COG3063 PilF Tfp pilus assembl 99.0 9.4E-08 2E-12 89.0 22.8 204 787-995 36-241 (250)
93 KOG0548 Molecular co-chaperone 99.0 3.9E-07 8.5E-12 95.5 29.2 363 640-1008 10-473 (539)
94 cd05804 StaR_like StaR_like; a 99.0 1.1E-06 2.3E-11 96.7 34.4 312 695-1025 4-337 (355)
95 PF12569 NARP1: NMDA receptor- 99.0 6.9E-07 1.5E-11 98.9 31.9 290 263-561 14-334 (517)
96 PRK11189 lipoprotein NlpI; Pro 99.0 2.1E-07 4.5E-12 97.8 25.8 216 801-1026 41-267 (296)
97 KOG4340 Uncharacterized conser 98.9 2E-06 4.4E-11 82.7 27.9 94 466-561 13-107 (459)
98 KOG0624 dsRNA-activated protei 98.9 3.4E-05 7.4E-10 76.1 35.9 212 665-921 157-371 (504)
99 PLN02789 farnesyltranstransfer 98.9 6.3E-07 1.4E-11 93.6 26.0 235 781-1022 34-300 (320)
100 PF04733 Coatomer_E: Coatomer 98.9 2.1E-08 4.5E-13 103.2 14.7 151 864-1024 110-265 (290)
101 KOG4340 Uncharacterized conser 98.9 5.4E-06 1.2E-10 79.9 29.0 195 256-460 13-210 (459)
102 COG5010 TadD Flp pilus assembl 98.8 6.8E-07 1.5E-11 85.5 19.7 159 860-1021 70-228 (257)
103 KOG1914 mRNA cleavage and poly 98.8 0.00042 9.2E-09 73.2 43.7 210 802-1014 309-529 (656)
104 KOG2053 Mitochondrial inherita 98.7 0.0011 2.3E-08 74.8 49.1 165 770-953 439-606 (932)
105 cd05804 StaR_like StaR_like; a 98.7 5.1E-05 1.1E-09 83.4 35.1 269 184-456 7-292 (355)
106 KOG1125 TPR repeat-containing 98.7 4.5E-07 9.7E-12 96.0 17.4 219 795-1023 294-526 (579)
107 PRK04841 transcriptional regul 98.7 5.6E-05 1.2E-09 94.7 38.3 340 671-1025 382-761 (903)
108 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.5E-11 89.6 19.1 184 818-1024 30-232 (235)
109 PRK10370 formate-dependent nit 98.7 1.3E-06 2.8E-11 84.9 17.4 124 869-995 52-178 (198)
110 PF04733 Coatomer_E: Coatomer 98.7 1.7E-06 3.8E-11 89.1 19.2 246 675-954 13-264 (290)
111 PRK15359 type III secretion sy 98.6 1.2E-06 2.6E-11 80.4 15.9 125 877-1007 14-138 (144)
112 PRK04841 transcriptional regul 98.6 9.8E-05 2.1E-09 92.5 38.3 335 227-561 383-760 (903)
113 KOG1125 TPR repeat-containing 98.6 4.2E-06 9.1E-11 88.8 20.6 246 742-1016 295-563 (579)
114 KOG2053 Mitochondrial inherita 98.6 0.0026 5.6E-08 71.9 52.3 519 439-1022 20-606 (932)
115 TIGR03302 OM_YfiO outer membra 98.6 4.7E-06 1E-10 85.1 20.2 187 784-992 31-234 (235)
116 KOG1128 Uncharacterized conser 98.6 2E-06 4.2E-11 93.6 17.4 206 771-988 402-614 (777)
117 KOG1070 rRNA processing protei 98.6 2.5E-05 5.3E-10 91.1 26.9 181 801-987 1512-1697(1710)
118 KOG1070 rRNA processing protei 98.6 8.8E-06 1.9E-10 94.6 23.2 214 808-1027 1446-1666(1710)
119 PRK15179 Vi polysaccharide bio 98.6 9.3E-06 2E-10 93.8 23.6 133 887-1023 82-216 (694)
120 KOG1914 mRNA cleavage and poly 98.5 0.0008 1.7E-08 71.2 33.0 156 872-1029 309-469 (656)
121 PRK15359 type III secretion sy 98.5 2.1E-06 4.6E-11 78.8 13.1 111 911-1026 13-123 (144)
122 PRK10370 formate-dependent nit 98.5 1.9E-05 4.2E-10 76.7 20.4 120 904-1025 52-174 (198)
123 KOG3060 Uncharacterized conser 98.5 0.00011 2.3E-09 70.0 23.8 197 799-1000 25-230 (289)
124 PRK14720 transcript cleavage f 98.5 5.2E-05 1.1E-09 88.2 26.5 240 693-1006 27-268 (906)
125 PLN02789 farnesyltranstransfer 98.5 3.1E-05 6.7E-10 81.0 22.4 190 831-1025 47-251 (320)
126 KOG3081 Vesicle coat complex C 98.5 5.7E-05 1.2E-09 72.4 21.3 107 901-1011 147-257 (299)
127 COG4783 Putative Zn-dependent 98.4 8.5E-05 1.8E-09 77.9 23.6 142 830-994 315-458 (484)
128 KOG3060 Uncharacterized conser 98.4 6.9E-05 1.5E-09 71.2 20.6 188 834-1024 25-220 (289)
129 PF12854 PPR_1: PPR repeat 98.4 3.6E-07 7.9E-12 58.7 4.0 32 283-314 2-33 (34)
130 COG5010 TadD Flp pilus assembl 98.4 4.7E-05 1E-09 73.2 19.5 165 820-989 66-230 (257)
131 PF12854 PPR_1: PPR repeat 98.4 5.4E-07 1.2E-11 57.9 4.0 32 816-847 2-33 (34)
132 KOG1128 Uncharacterized conser 98.4 3.7E-05 8E-10 84.0 20.1 213 658-919 393-615 (777)
133 COG4783 Putative Zn-dependent 98.4 8E-05 1.7E-09 78.1 21.6 143 862-1025 312-455 (484)
134 PRK14720 transcript cleavage f 98.3 3.4E-05 7.4E-10 89.7 20.8 186 819-1026 29-254 (906)
135 TIGR02552 LcrH_SycD type III s 98.3 8.5E-06 1.8E-10 74.7 12.9 115 878-996 5-120 (135)
136 PRK15179 Vi polysaccharide bio 98.3 7.9E-05 1.7E-09 86.2 22.6 131 856-990 86-217 (694)
137 TIGR02552 LcrH_SycD type III s 98.2 3.4E-05 7.5E-10 70.7 15.0 93 860-954 21-113 (135)
138 KOG3081 Vesicle coat complex C 98.2 0.00079 1.7E-08 64.8 22.2 137 366-512 116-256 (299)
139 PF09976 TPR_21: Tetratricopep 98.2 9.9E-05 2.1E-09 68.2 16.4 125 894-1021 15-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.4E-05 1.4E-09 80.1 16.6 122 896-1022 174-295 (395)
141 KOG0553 TPR repeat-containing 98.1 5.6E-05 1.2E-09 74.2 13.8 108 899-1009 89-197 (304)
142 PRK15363 pathogenicity island 98.1 5.2E-05 1.1E-09 67.9 12.1 95 927-1023 36-131 (157)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00017 3.7E-09 66.6 14.9 114 834-951 24-143 (145)
144 PF12895 Apc3: Anaphase-promot 98.0 2.3E-05 5E-10 64.3 7.3 81 939-1020 2-83 (84)
145 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00028 6.1E-09 62.9 13.7 104 893-998 4-113 (119)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00037 8.1E-09 74.4 16.4 124 823-953 171-295 (395)
147 KOG0550 Molecular chaperone (D 97.9 0.0015 3.4E-08 66.8 19.5 163 819-990 166-350 (486)
148 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.2E-09 61.6 11.2 93 929-1022 3-95 (100)
149 PF14938 SNAP: Soluble NSF att 97.8 0.0016 3.4E-08 68.1 19.7 121 900-1021 123-263 (282)
150 PLN03088 SGT1, suppressor of 97.8 0.00039 8.3E-09 75.0 15.5 108 898-1007 9-116 (356)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00039 8.5E-09 61.9 12.2 98 927-1026 3-107 (119)
152 cd00189 TPR Tetratricopeptide 97.7 0.00044 9.5E-09 58.6 11.6 92 896-989 5-96 (100)
153 PF12688 TPR_5: Tetratrico pep 97.7 0.00071 1.5E-08 58.7 12.3 88 898-987 8-101 (120)
154 TIGR00756 PPR pentatricopeptid 97.7 6.2E-05 1.3E-09 49.4 4.6 33 823-855 2-34 (35)
155 TIGR00756 PPR pentatricopeptid 97.7 7.5E-05 1.6E-09 49.0 4.7 33 858-890 2-34 (35)
156 PRK02603 photosystem I assembl 97.6 0.0016 3.6E-08 62.2 14.9 128 858-1010 37-166 (172)
157 KOG2041 WD40 repeat protein [G 97.6 0.05 1.1E-06 59.7 26.4 118 390-521 689-820 (1189)
158 PF08579 RPM2: Mitochondrial r 97.6 0.00077 1.7E-08 55.7 10.0 78 222-299 29-115 (120)
159 PRK02603 photosystem I assembl 97.6 0.0012 2.5E-08 63.2 13.3 91 893-984 37-129 (172)
160 PF13812 PPR_3: Pentatricopept 97.6 9.6E-05 2.1E-09 48.1 4.0 32 185-216 3-34 (34)
161 PLN03088 SGT1, suppressor of 97.6 0.00067 1.5E-08 73.1 12.9 94 931-1025 7-100 (356)
162 PF14938 SNAP: Soluble NSF att 97.6 0.023 5E-07 59.3 23.9 95 703-813 41-142 (282)
163 COG4235 Cytochrome c biogenesi 97.6 0.0019 4.2E-08 64.2 14.7 106 887-995 152-261 (287)
164 CHL00033 ycf3 photosystem I as 97.6 0.0014 3E-08 62.5 13.2 95 891-986 35-138 (168)
165 PF13414 TPR_11: TPR repeat; P 97.5 0.00037 8.1E-09 54.6 7.6 64 960-1023 2-66 (69)
166 PF13432 TPR_16: Tetratricopep 97.5 0.00035 7.6E-09 53.9 7.2 55 968-1022 4-58 (65)
167 PF13812 PPR_3: Pentatricopept 97.5 0.00016 3.6E-09 46.9 4.5 31 823-853 3-33 (34)
168 PRK15363 pathogenicity island 97.5 0.0034 7.4E-08 56.5 13.7 95 894-990 38-132 (157)
169 PF10037 MRP-S27: Mitochondria 97.5 0.0012 2.6E-08 70.8 12.9 121 250-370 63-185 (429)
170 PF13432 TPR_16: Tetratricopep 97.5 0.00044 9.5E-09 53.3 7.2 62 932-994 3-64 (65)
171 COG4700 Uncharacterized protei 97.5 0.018 4E-07 52.3 17.8 138 853-994 86-226 (251)
172 KOG0553 TPR repeat-containing 97.5 0.00088 1.9E-08 66.1 10.3 92 934-1026 89-180 (304)
173 KOG0550 Molecular chaperone (D 97.5 0.0047 1E-07 63.4 15.6 278 702-1025 54-351 (486)
174 PF12895 Apc3: Anaphase-promot 97.4 0.00025 5.4E-09 58.1 5.6 80 904-986 2-83 (84)
175 PRK10866 outer membrane biogen 97.4 0.045 9.8E-07 55.3 22.7 57 967-1023 181-240 (243)
176 PF14559 TPR_19: Tetratricopep 97.4 0.00056 1.2E-08 53.4 7.2 59 938-997 3-61 (68)
177 PF05843 Suf: Suppressor of fo 97.4 0.0034 7.3E-08 65.2 14.7 136 857-995 2-141 (280)
178 COG4700 Uncharacterized protei 97.4 0.029 6.3E-07 51.0 18.1 133 818-954 86-221 (251)
179 CHL00033 ycf3 photosystem I as 97.4 0.0021 4.6E-08 61.2 12.2 115 907-1021 15-139 (168)
180 PF14559 TPR_19: Tetratricopep 97.4 0.00038 8.2E-09 54.4 5.7 56 971-1026 1-56 (68)
181 PRK10866 outer membrane biogen 97.4 0.032 7E-07 56.3 20.9 182 786-988 32-239 (243)
182 PF10037 MRP-S27: Mitochondria 97.4 0.002 4.3E-08 69.2 12.7 119 217-335 65-185 (429)
183 KOG1130 Predicted G-alpha GTPa 97.4 0.0071 1.5E-07 61.8 15.5 155 857-1011 196-371 (639)
184 KOG1538 Uncharacterized conser 97.4 0.026 5.7E-07 61.2 20.3 55 891-954 747-801 (1081)
185 PF08579 RPM2: Mitochondrial r 97.3 0.0024 5.3E-08 52.9 9.9 76 258-333 30-114 (120)
186 PF05843 Suf: Suppressor of fo 97.3 0.0035 7.6E-08 65.1 13.9 131 822-955 2-136 (280)
187 PRK10153 DNA-binding transcrip 97.3 0.0081 1.7E-07 67.7 17.5 136 815-954 331-481 (517)
188 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.4E-08 51.9 7.2 64 927-991 4-68 (69)
189 PF01535 PPR: PPR repeat; Int 97.3 0.00037 8E-09 44.1 3.6 26 859-884 3-28 (31)
190 COG4235 Cytochrome c biogenesi 97.3 0.01 2.2E-07 59.3 15.2 99 855-955 155-256 (287)
191 KOG2796 Uncharacterized conser 97.3 0.028 6E-07 54.2 17.2 152 803-964 166-322 (366)
192 PRK10153 DNA-binding transcrip 97.3 0.013 2.8E-07 66.1 18.1 140 852-995 333-487 (517)
193 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.37 8E-06 50.6 39.8 234 621-884 290-530 (660)
194 PF01535 PPR: PPR repeat; Int 97.2 0.00036 7.9E-09 44.1 3.2 25 186-210 3-27 (31)
195 PRK15331 chaperone protein Sic 97.2 0.0067 1.5E-07 54.9 12.0 92 931-1023 42-133 (165)
196 KOG1130 Predicted G-alpha GTPa 97.2 0.0057 1.2E-07 62.5 12.5 291 704-1024 24-344 (639)
197 COG0457 NrfG FOG: TPR repeat [ 97.1 0.25 5.3E-06 50.5 26.0 199 821-1023 59-264 (291)
198 COG3898 Uncharacterized membra 97.1 0.44 9.5E-06 49.2 30.9 226 798-1034 166-403 (531)
199 PF12688 TPR_5: Tetratrico pep 97.1 0.019 4.1E-07 50.0 13.5 90 862-953 7-102 (120)
200 PRK10803 tol-pal system protei 97.1 0.0058 1.2E-07 62.1 11.9 104 891-997 143-253 (263)
201 PF13525 YfiO: Outer membrane 97.1 0.11 2.5E-06 51.0 20.6 50 967-1016 147-199 (203)
202 PRK10803 tol-pal system protei 97.0 0.015 3.3E-07 59.1 14.3 97 858-955 145-246 (263)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.58 1.3E-05 49.2 38.5 131 821-954 397-530 (660)
204 KOG2796 Uncharacterized conser 97.0 0.096 2.1E-06 50.7 18.3 135 860-995 181-320 (366)
205 KOG1258 mRNA processing protei 97.0 0.79 1.7E-05 50.6 34.8 327 675-1009 126-489 (577)
206 PF07079 DUF1347: Protein of u 97.0 0.62 1.3E-05 49.2 47.7 43 397-439 132-178 (549)
207 PF06239 ECSIT: Evolutionarily 97.0 0.015 3.2E-07 55.1 12.3 116 166-303 33-153 (228)
208 PF13525 YfiO: Outer membrane 96.9 0.11 2.3E-06 51.2 19.1 174 786-981 5-198 (203)
209 KOG1941 Acetylcholine receptor 96.9 0.071 1.5E-06 54.0 17.1 166 823-988 85-273 (518)
210 PF06239 ECSIT: Evolutionarily 96.9 0.019 4.1E-07 54.3 12.4 85 322-406 46-151 (228)
211 PF13371 TPR_9: Tetratricopept 96.9 0.0058 1.2E-07 48.4 8.1 59 935-994 4-62 (73)
212 KOG0543 FKBP-type peptidyl-pro 96.9 0.021 4.5E-07 59.3 13.5 97 927-1024 258-355 (397)
213 COG3898 Uncharacterized membra 96.8 0.76 1.6E-05 47.5 30.0 82 676-758 133-214 (531)
214 COG4105 ComL DNA uptake lipopr 96.8 0.35 7.5E-06 47.6 20.5 81 787-867 35-117 (254)
215 PF13371 TPR_9: Tetratricopept 96.8 0.0034 7.3E-08 49.8 6.0 59 968-1026 2-60 (73)
216 PF04840 Vps16_C: Vps16, C-ter 96.8 0.91 2E-05 47.8 28.3 110 325-454 179-288 (319)
217 KOG2280 Vacuolar assembly/sort 96.7 1.5 3.2E-05 49.6 35.3 112 893-1022 686-797 (829)
218 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0092 2E-07 63.4 10.2 63 890-954 74-140 (453)
219 KOG1538 Uncharacterized conser 96.6 0.41 8.8E-06 52.5 21.0 58 660-725 744-801 (1081)
220 PF07079 DUF1347: Protein of u 96.6 1.3 2.9E-05 46.9 46.9 347 155-526 14-409 (549)
221 KOG1920 IkappaB kinase complex 96.5 2.9 6.3E-05 50.1 28.7 32 693-725 787-820 (1265)
222 COG1729 Uncharacterized protei 96.5 0.034 7.4E-07 54.9 11.5 103 893-998 144-252 (262)
223 KOG2610 Uncharacterized conser 96.4 0.075 1.6E-06 53.2 13.4 189 832-1024 114-315 (491)
224 PF13424 TPR_12: Tetratricopep 96.4 0.0095 2.1E-07 47.9 6.4 61 928-988 7-73 (78)
225 COG4105 ComL DNA uptake lipopr 96.4 0.48 1E-05 46.6 18.7 57 967-1023 173-232 (254)
226 PF08631 SPO22: Meiosis protei 96.4 1.5 3.3E-05 45.6 24.9 102 822-926 85-192 (278)
227 PF13281 DUF4071: Domain of un 96.4 0.65 1.4E-05 49.2 20.9 169 826-996 146-340 (374)
228 PF13281 DUF4071: Domain of un 96.4 0.42 9.2E-06 50.6 19.4 190 839-1030 121-340 (374)
229 PF13424 TPR_12: Tetratricopep 96.3 0.0082 1.8E-07 48.3 5.2 61 893-953 7-73 (78)
230 KOG4555 TPR repeat-containing 96.3 0.055 1.2E-06 46.0 9.9 102 899-1003 51-155 (175)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.017 3.6E-07 61.6 8.6 107 923-1034 72-184 (453)
232 KOG1585 Protein required for f 96.2 0.33 7.2E-06 46.7 15.6 56 894-950 193-251 (308)
233 PF03704 BTAD: Bacterial trans 96.2 0.35 7.5E-06 44.7 16.3 69 894-963 65-138 (146)
234 KOG4234 TPR repeat-containing 96.1 0.14 3.1E-06 47.3 12.5 126 899-1029 103-238 (271)
235 PF03704 BTAD: Bacterial trans 96.1 0.19 4.2E-06 46.4 14.1 61 928-989 64-124 (146)
236 KOG2610 Uncharacterized conser 96.1 0.22 4.7E-06 50.1 14.5 152 798-952 115-273 (491)
237 KOG2041 WD40 repeat protein [G 96.0 3.4 7.4E-05 46.2 30.7 55 694-757 849-903 (1189)
238 KOG1585 Protein required for f 96.0 0.81 1.8E-05 44.1 17.4 144 826-986 96-252 (308)
239 COG3118 Thioredoxin domain-con 96.0 0.24 5.3E-06 49.4 14.6 148 863-1013 141-290 (304)
240 PF13428 TPR_14: Tetratricopep 96.0 0.015 3.3E-07 40.2 4.7 41 963-1003 3-43 (44)
241 PF13431 TPR_17: Tetratricopep 96.0 0.0074 1.6E-07 38.7 2.7 33 984-1016 2-34 (34)
242 KOG4555 TPR repeat-containing 95.9 0.23 5E-06 42.4 11.9 92 865-957 52-146 (175)
243 PRK11906 transcriptional regul 95.8 0.21 4.5E-06 53.7 14.0 161 857-1021 252-433 (458)
244 PF04840 Vps16_C: Vps16, C-ter 95.7 3.4 7.3E-05 43.6 32.1 111 857-987 178-288 (319)
245 KOG1586 Protein required for f 95.6 1.8 4E-05 41.6 17.7 58 936-993 164-227 (288)
246 PF13512 TPR_18: Tetratricopep 95.6 0.31 6.6E-06 43.4 12.1 52 902-954 21-75 (142)
247 KOG0543 FKBP-type peptidyl-pro 95.5 0.24 5.2E-06 51.8 13.1 97 892-991 258-356 (397)
248 KOG1920 IkappaB kinase complex 95.5 2.5 5.4E-05 50.6 22.1 89 776-881 961-1051(1265)
249 PF10300 DUF3808: Protein of u 95.5 0.75 1.6E-05 51.7 18.0 25 825-849 192-216 (468)
250 PRK15331 chaperone protein Sic 95.4 0.71 1.5E-05 42.2 14.1 87 796-884 47-133 (165)
251 PF02259 FAT: FAT domain; Int 95.4 5.2 0.00011 43.6 25.5 64 974-1037 271-341 (352)
252 PF09205 DUF1955: Domain of un 95.4 1.6 3.5E-05 37.7 15.1 137 867-1027 13-152 (161)
253 PRK11906 transcriptional regul 95.3 1.2 2.6E-05 48.0 17.6 148 836-989 273-435 (458)
254 KOG2114 Vacuolar assembly/sort 95.3 7.7 0.00017 44.9 26.7 175 187-384 338-516 (933)
255 COG1729 Uncharacterized protei 95.2 0.29 6.3E-06 48.6 12.0 95 859-955 145-244 (262)
256 KOG1258 mRNA processing protei 95.2 6.5 0.00014 43.8 36.5 99 463-561 297-395 (577)
257 KOG1941 Acetylcholine receptor 94.8 2 4.4E-05 44.0 16.6 225 797-1021 17-272 (518)
258 COG4785 NlpI Lipoprotein NlpI, 94.7 4 8.6E-05 38.8 17.5 197 782-990 61-266 (297)
259 PF10300 DUF3808: Protein of u 94.7 1.2 2.7E-05 50.0 17.0 115 870-987 247-373 (468)
260 PF13512 TPR_18: Tetratricopep 94.7 0.9 1.9E-05 40.5 12.4 114 863-997 17-135 (142)
261 COG0457 NrfG FOG: TPR repeat [ 94.6 5.7 0.00012 40.0 31.7 193 797-993 70-268 (291)
262 KOG1464 COP9 signalosome, subu 94.5 5.3 0.00011 39.3 23.8 312 694-1030 23-371 (440)
263 PF04053 Coatomer_WDAD: Coatom 94.5 1 2.2E-05 49.9 15.3 133 821-986 295-427 (443)
264 KOG4234 TPR repeat-containing 94.5 0.39 8.5E-06 44.6 9.8 93 933-1026 102-199 (271)
265 COG3118 Thioredoxin domain-con 94.5 4.6 0.0001 40.8 17.9 143 829-975 142-286 (304)
266 PF12921 ATP13: Mitochondrial 94.4 0.53 1.1E-05 41.6 10.4 97 183-299 2-99 (126)
267 PF08631 SPO22: Meiosis protei 94.4 7.5 0.00016 40.5 25.9 53 158-210 4-63 (278)
268 smart00299 CLH Clathrin heavy 94.4 3.1 6.7E-05 37.9 16.2 124 860-1005 11-135 (140)
269 COG4649 Uncharacterized protei 94.2 4.4 9.6E-05 37.1 15.6 54 936-989 142-195 (221)
270 KOG3941 Intermediate in Toll s 94.2 0.37 8E-06 47.3 9.5 32 272-303 142-173 (406)
271 PF04184 ST7: ST7 protein; In 94.0 11 0.00024 41.1 21.2 55 897-952 265-321 (539)
272 PF12921 ATP13: Mitochondrial 93.9 0.53 1.2E-05 41.5 9.4 47 389-435 48-95 (126)
273 PF04184 ST7: ST7 protein; In 93.9 4.1 8.9E-05 44.2 17.3 65 821-885 259-324 (539)
274 smart00299 CLH Clathrin heavy 93.7 2.6 5.5E-05 38.5 14.3 48 147-196 7-54 (140)
275 COG2909 MalT ATP-dependent tra 93.6 19 0.00041 42.4 25.9 196 828-1023 422-646 (894)
276 PF13428 TPR_14: Tetratricopep 93.5 0.26 5.7E-06 34.0 5.6 39 928-967 3-41 (44)
277 KOG2114 Vacuolar assembly/sort 93.4 19 0.00042 41.8 25.9 85 469-557 403-488 (933)
278 PF09205 DUF1955: Domain of un 93.4 4.9 0.00011 34.9 14.8 134 406-563 15-151 (161)
279 KOG3941 Intermediate in Toll s 93.4 0.58 1.3E-05 46.0 9.3 32 342-373 142-173 (406)
280 PF04053 Coatomer_WDAD: Coatom 93.3 1.6 3.5E-05 48.3 14.2 153 299-487 272-426 (443)
281 COG4649 Uncharacterized protei 93.3 6.2 0.00013 36.2 14.7 125 831-955 68-196 (221)
282 COG2976 Uncharacterized protei 93.1 6.9 0.00015 36.9 15.2 88 863-955 96-188 (207)
283 PF13170 DUF4003: Protein of u 93.0 9 0.00019 40.0 18.2 148 837-986 78-242 (297)
284 PF13176 TPR_7: Tetratricopept 92.7 0.24 5.3E-06 32.3 4.2 25 929-953 2-26 (36)
285 PF13170 DUF4003: Protein of u 92.7 14 0.00031 38.5 20.3 129 304-434 78-223 (297)
286 KOG4648 Uncharacterized conser 92.4 0.63 1.4E-05 47.0 8.4 93 899-994 105-198 (536)
287 KOG1550 Extracellular protein 92.2 6.8 0.00015 45.4 17.8 179 801-989 227-425 (552)
288 KOG2280 Vacuolar assembly/sort 92.1 27 0.00058 40.2 37.3 86 434-521 443-531 (829)
289 COG2976 Uncharacterized protei 92.0 7.9 0.00017 36.5 14.3 54 970-1024 135-188 (207)
290 PF07035 Mic1: Colon cancer-as 91.7 9.3 0.0002 35.5 14.6 101 309-419 15-115 (167)
291 PF13431 TPR_17: Tetratricopep 91.4 0.27 5.9E-06 31.5 3.2 32 914-946 2-33 (34)
292 PF10602 RPN7: 26S proteasome 91.4 4.2 9.1E-05 38.7 12.5 95 928-1022 38-140 (177)
293 PF04097 Nic96: Nup93/Nic96; 91.3 25 0.00054 41.3 21.3 18 1005-1022 515-532 (613)
294 KOG2062 26S proteasome regulat 91.3 32 0.0007 39.5 39.2 119 830-954 510-634 (929)
295 COG4785 NlpI Lipoprotein NlpI, 91.2 14 0.00031 35.3 17.1 182 833-1026 77-268 (297)
296 PF09613 HrpB1_HrpK: Bacterial 90.7 13 0.00029 34.1 14.8 50 868-919 22-72 (160)
297 COG3947 Response regulator con 90.7 13 0.00028 37.4 15.0 60 929-989 282-341 (361)
298 PF07719 TPR_2: Tetratricopept 90.4 0.69 1.5E-05 29.5 4.5 24 967-990 7-30 (34)
299 KOG1586 Protein required for f 90.0 20 0.00043 34.9 17.5 128 869-1026 86-226 (288)
300 KOG1550 Extracellular protein 89.7 30 0.00064 40.2 20.0 220 796-1025 259-505 (552)
301 PF00515 TPR_1: Tetratricopept 89.6 0.8 1.7E-05 29.2 4.3 27 928-954 3-29 (34)
302 PF00515 TPR_1: Tetratricopept 89.5 0.97 2.1E-05 28.8 4.6 31 963-993 3-33 (34)
303 PF13176 TPR_7: Tetratricopept 89.5 0.73 1.6E-05 30.0 4.0 25 964-988 2-26 (36)
304 COG2909 MalT ATP-dependent tra 89.4 53 0.0011 38.9 26.6 51 834-884 471-525 (894)
305 PF09613 HrpB1_HrpK: Bacterial 89.4 5.2 0.00011 36.6 10.5 111 890-1007 6-122 (160)
306 COG3629 DnrI DNA-binding trans 88.8 4.2 9.2E-05 41.3 10.7 73 894-967 156-233 (280)
307 PF10602 RPN7: 26S proteasome 88.4 5.5 0.00012 37.9 10.8 97 893-989 38-141 (177)
308 PF07035 Mic1: Colon cancer-as 88.3 22 0.00047 33.2 15.2 133 239-385 15-147 (167)
309 COG3629 DnrI DNA-binding trans 87.9 4.9 0.00011 40.9 10.4 78 664-741 154-236 (280)
310 PF07719 TPR_2: Tetratricopept 87.6 1.3 2.8E-05 28.2 4.3 27 928-954 3-29 (34)
311 COG1747 Uncharacterized N-term 87.3 50 0.0011 36.2 24.5 182 818-1006 63-250 (711)
312 COG0790 FOG: TPR repeat, SEL1 87.3 42 0.0009 35.3 22.3 78 944-1027 173-269 (292)
313 PF06552 TOM20_plant: Plant sp 86.6 11 0.00025 35.1 11.0 12 928-939 71-82 (186)
314 PF13929 mRNA_stabil: mRNA sta 86.3 41 0.0009 34.3 16.3 135 409-543 144-289 (292)
315 KOG0890 Protein kinase of the 85.8 1.4E+02 0.0031 39.9 27.8 86 670-756 1456-1542(2382)
316 TIGR02561 HrpB1_HrpK type III 84.8 4.5 9.8E-05 36.2 7.3 82 928-1011 9-94 (153)
317 KOG4570 Uncharacterized conser 84.5 7.1 0.00015 39.5 9.2 103 213-317 59-164 (418)
318 PF07721 TPR_4: Tetratricopept 83.9 1.4 3.1E-05 26.1 2.8 23 997-1019 3-25 (26)
319 KOG4648 Uncharacterized conser 83.9 3 6.6E-05 42.4 6.6 90 932-1022 103-192 (536)
320 KOG2066 Vacuolar assembly/sort 83.8 95 0.0021 36.3 31.4 102 605-709 362-467 (846)
321 COG0790 FOG: TPR repeat, SEL1 83.7 61 0.0013 34.0 22.7 182 798-992 53-268 (292)
322 PF13374 TPR_10: Tetratricopep 83.7 2 4.3E-05 28.9 3.9 28 996-1023 3-30 (42)
323 TIGR02561 HrpB1_HrpK type III 83.6 12 0.00026 33.7 9.3 64 890-955 6-73 (153)
324 PRK15180 Vi polysaccharide bio 83.0 10 0.00022 40.6 10.2 129 863-994 296-424 (831)
325 PF11207 DUF2989: Protein of u 82.9 14 0.00031 35.3 10.2 78 866-945 117-197 (203)
326 PF13181 TPR_8: Tetratricopept 82.8 2.3 4.9E-05 27.0 3.7 27 928-954 3-29 (34)
327 PF13374 TPR_10: Tetratricopep 82.5 2.7 5.8E-05 28.3 4.2 28 927-954 3-30 (42)
328 KOG0276 Vesicle coat complex C 82.3 11 0.00023 41.9 10.3 151 798-988 598-748 (794)
329 KOG2063 Vacuolar assembly/sort 81.7 1.3E+02 0.0029 36.4 23.0 28 699-726 506-533 (877)
330 PF09986 DUF2225: Uncharacteri 81.3 13 0.00029 36.5 10.0 31 995-1025 165-195 (214)
331 PF13929 mRNA_stabil: mRNA sta 81.3 46 0.001 33.9 13.6 118 196-313 141-263 (292)
332 PF02284 COX5A: Cytochrome c o 80.9 18 0.0004 30.0 8.7 55 944-998 28-82 (108)
333 PF13174 TPR_6: Tetratricopept 80.6 2.2 4.8E-05 26.8 3.0 27 997-1023 2-28 (33)
334 KOG4642 Chaperone-dependent E3 80.6 26 0.00055 34.3 11.0 85 901-989 20-106 (284)
335 KOG2471 TPR repeat-containing 80.4 42 0.00092 36.5 13.5 118 890-1008 238-382 (696)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 80.2 11 0.00024 30.8 7.2 52 942-993 23-74 (103)
337 PF04097 Nic96: Nup93/Nic96; 80.1 1.3E+02 0.0029 35.5 25.8 37 704-742 265-301 (613)
338 PF13181 TPR_8: Tetratricopept 80.1 3.7 8E-05 26.0 4.0 30 963-992 3-32 (34)
339 KOG0276 Vesicle coat complex C 79.7 37 0.0008 38.0 13.2 26 254-279 667-692 (794)
340 PF13174 TPR_6: Tetratricopept 79.7 3 6.4E-05 26.2 3.4 23 932-954 6-28 (33)
341 KOG4570 Uncharacterized conser 79.7 32 0.00069 35.1 11.7 102 851-954 59-163 (418)
342 COG1747 Uncharacterized N-term 79.5 1.1E+02 0.0023 33.9 25.4 95 427-525 65-159 (711)
343 COG3947 Response regulator con 79.4 76 0.0017 32.3 16.7 60 465-524 281-340 (361)
344 KOG0403 Neoplastic transformat 79.2 99 0.0021 33.4 25.2 75 666-744 512-586 (645)
345 PF11207 DUF2989: Protein of u 79.0 20 0.00044 34.3 9.8 75 938-1014 119-197 (203)
346 PF07575 Nucleopor_Nup85: Nup8 78.9 67 0.0014 37.6 16.5 33 544-576 507-539 (566)
347 PF00637 Clathrin: Region in C 78.6 0.32 6.9E-06 44.7 -2.1 52 670-721 14-66 (143)
348 COG5159 RPN6 26S proteasome re 77.7 83 0.0018 31.7 21.0 137 539-725 10-153 (421)
349 COG5159 RPN6 26S proteasome re 77.3 85 0.0018 31.7 21.6 178 825-1005 129-326 (421)
350 COG5187 RPN7 26S proteasome re 77.0 87 0.0019 31.7 13.7 120 821-940 115-241 (412)
351 PF06552 TOM20_plant: Plant sp 77.0 26 0.00056 32.8 9.6 108 837-955 7-136 (186)
352 COG4455 ImpE Protein of avirul 77.0 18 0.00038 34.8 8.6 77 466-542 4-82 (273)
353 KOG4507 Uncharacterized conser 76.9 13 0.00028 41.1 8.8 87 867-954 618-704 (886)
354 PF04910 Tcf25: Transcriptiona 76.3 1.1E+02 0.0023 33.3 15.9 98 857-954 41-167 (360)
355 KOG4507 Uncharacterized conser 75.4 9.7 0.00021 42.0 7.5 130 875-1006 592-721 (886)
356 PF10345 Cohesin_load: Cohesin 75.2 1.8E+02 0.004 34.4 45.4 190 832-1022 372-604 (608)
357 PF04910 Tcf25: Transcriptiona 74.5 1.3E+02 0.0029 32.5 19.1 137 887-1023 36-221 (360)
358 PF10579 Rapsyn_N: Rapsyn N-te 73.8 20 0.00044 28.1 6.8 46 798-843 18-65 (80)
359 cd00923 Cyt_c_Oxidase_Va Cytoc 73.5 21 0.00046 29.3 7.1 60 838-898 24-83 (103)
360 TIGR03504 FimV_Cterm FimV C-te 73.1 5.7 0.00012 27.2 3.4 26 1000-1025 4-29 (44)
361 PF08424 NRDE-2: NRDE-2, neces 73.0 1.4E+02 0.0029 32.0 16.4 78 874-953 49-129 (321)
362 PF02259 FAT: FAT domain; Int 72.5 1.5E+02 0.0032 32.1 26.7 63 324-386 147-212 (352)
363 PF04190 DUF410: Protein of un 72.4 1.2E+02 0.0026 31.1 17.1 82 924-1024 88-170 (260)
364 PF07721 TPR_4: Tetratricopept 72.2 6 0.00013 23.4 3.0 19 931-949 6-24 (26)
365 COG4455 ImpE Protein of avirul 71.7 58 0.0013 31.5 10.6 61 858-919 3-63 (273)
366 KOG2063 Vacuolar assembly/sort 71.1 2.5E+02 0.0054 34.2 25.5 41 436-476 599-639 (877)
367 PRK09687 putative lyase; Provi 70.7 1.4E+02 0.003 31.1 25.8 59 924-989 204-262 (280)
368 KOG1924 RhoA GTPase effector D 70.4 1.1E+02 0.0023 35.7 14.0 61 248-308 796-858 (1102)
369 KOG3364 Membrane protein invol 70.0 43 0.00094 29.6 8.6 73 923-996 29-106 (149)
370 KOG3364 Membrane protein invol 70.0 57 0.0012 28.9 9.3 71 888-961 29-104 (149)
371 PF10579 Rapsyn_N: Rapsyn N-te 69.5 14 0.0003 29.0 5.1 18 973-990 18-35 (80)
372 PF14561 TPR_20: Tetratricopep 69.4 16 0.00034 30.1 5.9 64 958-1021 19-85 (90)
373 PF07163 Pex26: Pex26 protein; 69.1 1.4E+02 0.003 30.4 13.0 53 294-346 124-181 (309)
374 PF02284 COX5A: Cytochrome c o 67.8 72 0.0016 26.7 9.7 47 446-492 28-74 (108)
375 TIGR03504 FimV_Cterm FimV C-te 66.8 14 0.00031 25.3 4.3 23 932-954 5-27 (44)
376 PF08424 NRDE-2: NRDE-2, neces 66.4 1.9E+02 0.004 30.9 18.4 99 692-792 14-127 (321)
377 PF00637 Clathrin: Region in C 66.3 2 4.3E-05 39.4 0.1 83 897-986 13-95 (143)
378 PF04190 DUF410: Protein of un 65.8 1.7E+02 0.0036 30.1 19.5 122 815-955 43-170 (260)
379 PF00244 14-3-3: 14-3-3 protei 65.4 1.2E+02 0.0026 30.6 12.4 58 827-884 7-65 (236)
380 KOG4814 Uncharacterized conser 65.4 42 0.00091 37.9 9.6 85 902-989 365-456 (872)
381 PF10345 Cohesin_load: Cohesin 65.0 2.9E+02 0.0064 32.7 49.2 196 181-386 28-253 (608)
382 PRK10941 hypothetical protein; 64.8 42 0.0009 34.4 9.1 64 930-995 185-249 (269)
383 KOG0687 26S proteasome regulat 64.5 1.8E+02 0.004 30.2 15.2 98 822-919 105-209 (393)
384 PRK09687 putative lyase; Provi 64.4 1.8E+02 0.004 30.2 28.4 137 819-971 140-277 (280)
385 smart00028 TPR Tetratricopepti 62.4 12 0.00026 22.5 3.3 25 929-953 4-28 (34)
386 KOG0530 Protein farnesyltransf 61.9 1.8E+02 0.0039 29.3 13.8 92 907-1000 94-186 (318)
387 PF07163 Pex26: Pex26 protein; 61.0 85 0.0018 31.8 9.9 92 220-311 85-181 (309)
388 TIGR02508 type_III_yscG type I 61.0 97 0.0021 25.8 8.6 56 292-353 43-98 (115)
389 KOG2005 26S proteasome regulat 60.6 3.2E+02 0.0069 31.6 28.3 157 872-1030 485-657 (878)
390 PF09670 Cas_Cas02710: CRISPR- 60.5 1.1E+02 0.0024 33.4 12.1 57 863-920 138-198 (379)
391 PF11838 ERAP1_C: ERAP1-like C 60.5 2.4E+02 0.0051 30.1 20.8 145 872-1021 146-305 (324)
392 KOG1308 Hsp70-interacting prot 60.0 12 0.00027 38.6 4.2 117 868-989 126-243 (377)
393 PF14689 SPOB_a: Sensor_kinase 59.6 23 0.0005 26.6 4.7 45 943-989 7-51 (62)
394 KOG2471 TPR repeat-containing 59.2 2.8E+02 0.0062 30.6 19.0 60 963-1022 621-682 (696)
395 smart00028 TPR Tetratricopepti 59.1 18 0.00039 21.6 3.8 25 965-989 5-29 (34)
396 PRK11619 lytic murein transgly 58.6 3.8E+02 0.0082 31.9 39.9 252 611-893 253-513 (644)
397 KOG1308 Hsp70-interacting prot 57.9 9.9 0.00022 39.2 3.2 87 901-990 124-211 (377)
398 PF14853 Fis1_TPR_C: Fis1 C-te 57.2 53 0.0012 23.7 5.9 22 933-954 8-29 (53)
399 PF09986 DUF2225: Uncharacteri 56.7 1.8E+02 0.004 28.7 11.8 25 931-955 170-194 (214)
400 COG5187 RPN7 26S proteasome re 56.4 2.3E+02 0.0051 28.8 15.1 99 856-954 115-220 (412)
401 PF13762 MNE1: Mitochondrial s 56.2 1.6E+02 0.0034 26.8 11.7 23 257-279 43-65 (145)
402 KOG4279 Serine/threonine prote 55.6 3.4E+02 0.0075 31.7 14.5 142 833-1001 255-406 (1226)
403 PF00244 14-3-3: 14-3-3 protei 55.2 1.3E+02 0.0028 30.3 10.7 55 795-849 10-65 (236)
404 KOG0551 Hsp90 co-chaperone CNS 54.1 97 0.0021 32.2 9.3 119 869-989 55-181 (390)
405 PF11817 Foie-gras_1: Foie gra 53.3 66 0.0014 32.7 8.4 59 965-1023 182-246 (247)
406 KOG0376 Serine-threonine phosp 53.2 29 0.00063 37.8 5.9 100 864-969 12-113 (476)
407 KOG2297 Predicted translation 52.7 2.8E+02 0.0061 28.6 21.0 19 429-447 322-340 (412)
408 PRK10941 hypothetical protein; 52.5 98 0.0021 31.8 9.4 59 896-955 186-244 (269)
409 PF12862 Apc5: Anaphase-promot 52.3 59 0.0013 27.0 6.6 57 937-993 9-73 (94)
410 PF14853 Fis1_TPR_C: Fis1 C-te 52.3 71 0.0015 23.1 5.9 33 966-998 6-38 (53)
411 PF09477 Type_III_YscG: Bacter 52.3 1.4E+02 0.0031 25.3 8.2 79 268-353 21-99 (116)
412 PRK11619 lytic murein transgly 51.9 4.8E+02 0.01 31.1 39.2 118 441-560 254-374 (644)
413 PF14689 SPOB_a: Sensor_kinase 51.6 39 0.00084 25.4 4.8 47 976-1023 5-51 (62)
414 KOG4077 Cytochrome c oxidase, 51.4 1E+02 0.0022 26.9 7.5 53 944-996 67-119 (149)
415 KOG2659 LisH motif-containing 51.3 74 0.0016 31.2 7.7 117 887-1005 22-148 (228)
416 COG4941 Predicted RNA polymera 51.2 3.2E+02 0.0068 28.7 13.4 21 970-990 374-394 (415)
417 KOG4642 Chaperone-dependent E3 51.2 67 0.0015 31.6 7.3 86 935-1022 19-105 (284)
418 KOG2396 HAT (Half-A-TPR) repea 49.8 4.1E+02 0.009 29.7 39.4 98 889-989 457-558 (568)
419 PF13762 MNE1: Mitochondrial s 48.8 2.1E+02 0.0046 26.0 11.1 81 185-265 41-127 (145)
420 KOG0991 Replication factor C, 48.6 2.8E+02 0.0061 27.4 11.4 130 828-967 137-279 (333)
421 smart00101 14_3_3 14-3-3 homol 48.5 3E+02 0.0066 27.8 16.5 58 827-884 7-67 (244)
422 PRK09857 putative transposase; 48.1 89 0.0019 32.7 8.5 65 966-1030 211-275 (292)
423 KOG2168 Cullins [Cell cycle co 47.4 5.8E+02 0.013 30.7 19.8 43 668-710 330-372 (835)
424 KOG3807 Predicted membrane pro 47.3 3.5E+02 0.0076 28.1 17.0 58 825-884 279-339 (556)
425 TIGR02508 type_III_yscG type I 46.3 1.8E+02 0.0038 24.4 8.2 57 436-498 47-103 (115)
426 KOG2297 Predicted translation 46.3 3.5E+02 0.0077 27.9 20.9 17 465-481 323-339 (412)
427 COG4259 Uncharacterized protei 45.4 1.3E+02 0.0027 25.0 6.8 26 970-995 81-106 (121)
428 PHA02875 ankyrin repeat protei 45.1 3.8E+02 0.0083 29.8 13.9 16 330-345 139-154 (413)
429 PF11846 DUF3366: Domain of un 45.1 72 0.0016 30.9 7.0 35 958-992 141-175 (193)
430 PF11846 DUF3366: Domain of un 45.1 86 0.0019 30.4 7.6 53 160-212 121-173 (193)
431 smart00386 HAT HAT (Half-A-TPR 44.8 51 0.0011 20.1 4.1 14 941-954 2-15 (33)
432 PRK13342 recombination factor 44.1 4.9E+02 0.011 29.0 18.4 36 835-870 244-279 (413)
433 KOG2300 Uncharacterized conser 43.3 5.1E+02 0.011 28.9 41.7 180 831-1010 333-540 (629)
434 PRK12798 chemotaxis protein; R 43.2 4.8E+02 0.01 28.6 19.6 187 834-1026 125-326 (421)
435 PF12862 Apc5: Anaphase-promot 43.0 1.2E+02 0.0026 25.1 7.1 53 902-954 9-69 (94)
436 cd02679 MIT_spastin MIT: domai 42.9 16 0.00035 28.9 1.6 49 973-1024 20-68 (79)
437 cd08819 CARD_MDA5_2 Caspase ac 42.0 1.9E+02 0.0041 23.5 7.3 13 337-349 50-62 (88)
438 cd02679 MIT_spastin MIT: domai 41.9 46 0.001 26.4 4.0 61 782-849 4-67 (79)
439 KOG2062 26S proteasome regulat 41.3 6.7E+02 0.014 29.7 40.2 93 667-760 541-634 (929)
440 KOG0376 Serine-threonine phosp 40.9 49 0.0011 36.2 5.3 105 828-938 11-117 (476)
441 PF09670 Cas_Cas02710: CRISPR- 40.7 2.7E+02 0.0058 30.6 11.1 57 828-885 138-198 (379)
442 KOG2581 26S proteasome regulat 39.4 3.9E+02 0.0085 28.9 11.1 130 821-954 124-275 (493)
443 KOG2066 Vacuolar assembly/sort 39.0 7.4E+02 0.016 29.5 32.0 25 326-350 395-419 (846)
444 KOG0545 Aryl-hydrocarbon recep 38.9 4.1E+02 0.0089 26.6 11.6 55 864-919 238-292 (329)
445 KOG2422 Uncharacterized conser 38.8 6.5E+02 0.014 28.8 17.8 90 864-953 350-446 (665)
446 PF12968 DUF3856: Domain of Un 38.2 2.7E+02 0.0059 24.2 10.7 20 1002-1021 107-126 (144)
447 KOG0292 Vesicle coat complex C 37.8 1.8E+02 0.0039 34.6 9.2 161 825-1026 624-784 (1202)
448 COG4941 Predicted RNA polymera 37.7 3.7E+02 0.0081 28.2 10.4 115 905-1023 270-393 (415)
449 PF14561 TPR_20: Tetratricopep 37.6 2.3E+02 0.005 23.3 8.9 63 486-548 11-74 (90)
450 KOG2422 Uncharacterized conser 37.5 6.8E+02 0.015 28.6 16.1 159 832-991 249-449 (665)
451 KOG1497 COP9 signalosome, subu 37.3 5E+02 0.011 27.1 13.9 165 861-1026 28-215 (399)
452 KOG0686 COP9 signalosome, subu 37.0 5.8E+02 0.013 27.7 13.9 63 822-884 151-215 (466)
453 KOG0687 26S proteasome regulat 36.8 5.2E+02 0.011 27.1 16.3 63 860-922 108-175 (393)
454 PF04762 IKI3: IKI3 family; I 36.7 8.4E+02 0.018 30.7 15.6 14 1007-1020 913-926 (928)
455 KOG2582 COP9 signalosome, subu 36.6 5.6E+02 0.012 27.4 17.8 56 403-458 287-346 (422)
456 cd08819 CARD_MDA5_2 Caspase ac 36.6 2.2E+02 0.0047 23.2 6.9 63 343-411 22-84 (88)
457 PRK13342 recombination factor 36.4 6.4E+02 0.014 28.1 18.8 20 941-960 245-264 (413)
458 KOG2034 Vacuolar sorting prote 36.3 8.6E+02 0.019 29.5 26.6 34 803-836 610-643 (911)
459 PF11663 Toxin_YhaV: Toxin wit 36.3 31 0.00067 30.4 2.4 28 302-331 109-136 (140)
460 PHA02875 ankyrin repeat protei 36.0 5.8E+02 0.013 28.3 13.6 11 521-531 219-229 (413)
461 KOG2396 HAT (Half-A-TPR) repea 35.2 6.9E+02 0.015 28.1 41.1 100 853-955 456-559 (568)
462 KOG1114 Tripeptidyl peptidase 34.8 9.3E+02 0.02 29.5 14.2 69 838-906 1213-1282(1304)
463 COG4976 Predicted methyltransf 34.6 77 0.0017 31.0 4.9 54 901-955 5-58 (287)
464 PF03745 DUF309: Domain of unk 34.4 1.6E+02 0.0035 22.1 5.7 48 333-380 9-61 (62)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 34.3 2.6E+02 0.0056 24.8 8.1 76 769-846 48-124 (126)
466 COG4976 Predicted methyltransf 33.9 67 0.0014 31.4 4.4 62 935-997 4-65 (287)
467 PF10255 Paf67: RNA polymerase 33.6 3E+02 0.0065 30.2 9.8 133 890-1022 38-191 (404)
468 PF11848 DUF3368: Domain of un 33.0 1.6E+02 0.0034 20.7 5.2 31 509-539 14-44 (48)
469 PF14669 Asp_Glu_race_2: Putat 32.9 4.5E+02 0.0097 25.2 13.9 55 363-417 137-205 (233)
470 PRK10564 maltose regulon perip 32.9 80 0.0017 32.5 5.1 38 859-896 260-297 (303)
471 TIGR02498 type_III_ssaH type I 32.8 2.1E+02 0.0046 22.6 6.0 59 972-1030 17-75 (79)
472 PRK13800 putative oxidoreducta 32.2 1.1E+03 0.024 29.6 26.7 168 819-1005 726-894 (897)
473 PF10366 Vps39_1: Vacuolar sor 32.0 2.2E+02 0.0047 24.5 6.9 27 255-281 41-67 (108)
474 PF11848 DUF3368: Domain of un 32.0 1.7E+02 0.0036 20.6 5.2 31 195-225 14-44 (48)
475 PHA02707 hypothetical protein; 31.5 17 0.00037 22.1 0.2 10 3-12 7-16 (37)
476 PF15297 CKAP2_C: Cytoskeleton 31.2 2.1E+02 0.0046 30.2 7.8 62 908-971 120-185 (353)
477 PF11663 Toxin_YhaV: Toxin wit 30.9 58 0.0013 28.8 3.2 28 267-296 109-136 (140)
478 PRK14136 recX recombination re 30.3 6.5E+02 0.014 26.3 15.5 84 818-924 159-242 (309)
479 COG5108 RPO41 Mitochondrial DN 30.2 3.8E+02 0.0082 30.9 9.9 46 826-871 33-80 (1117)
480 KOG4279 Serine/threonine prote 29.8 2.5E+02 0.0055 32.7 8.6 184 841-1029 183-400 (1226)
481 PF04762 IKI3: IKI3 family; I 29.1 1.3E+03 0.027 29.2 17.8 25 327-351 816-842 (928)
482 KOG1524 WD40 repeat-containing 28.9 1.8E+02 0.004 32.2 7.1 25 927-951 603-627 (737)
483 KOG1839 Uncharacterized protei 28.7 5.6E+02 0.012 32.5 11.9 143 808-950 960-1123(1236)
484 smart00638 LPD_N Lipoprotein N 28.7 1E+03 0.022 28.0 28.1 57 360-421 312-368 (574)
485 KOG0686 COP9 signalosome, subu 28.7 8E+02 0.017 26.8 15.5 92 665-758 152-255 (466)
486 KOG4521 Nuclear pore complex, 28.7 1.3E+03 0.028 29.2 16.3 136 700-845 986-1126(1480)
487 PF13934 ELYS: Nuclear pore co 28.1 4E+02 0.0087 26.6 9.2 97 137-240 98-198 (226)
488 KOG2034 Vacuolar sorting prote 27.8 1.2E+03 0.026 28.5 27.8 44 331-383 512-555 (911)
489 cd00280 TRFH Telomeric Repeat 27.3 5.6E+02 0.012 24.5 9.1 21 670-690 118-138 (200)
490 COG2178 Predicted RNA-binding 27.1 5.7E+02 0.012 24.6 10.2 108 270-386 20-149 (204)
491 PRK10564 maltose regulon perip 27.1 1.1E+02 0.0025 31.5 5.1 41 321-361 254-295 (303)
492 PRK09857 putative transposase; 25.9 4E+02 0.0087 27.9 9.1 58 902-960 217-274 (292)
493 PF10366 Vps39_1: Vacuolar sor 25.8 3.1E+02 0.0068 23.5 6.8 27 928-954 41-67 (108)
494 smart00777 Mad3_BUB1_I Mad3/BU 25.7 4.7E+02 0.01 23.2 9.4 43 908-950 80-123 (125)
495 cd00280 TRFH Telomeric Repeat 25.5 6E+02 0.013 24.3 9.1 61 907-970 85-152 (200)
496 KOG1464 COP9 signalosome, subu 25.5 7.2E+02 0.016 25.2 28.4 138 318-455 21-172 (440)
497 PRK13184 pknD serine/threonine 25.4 1.4E+03 0.031 28.6 27.0 397 471-1020 483-896 (932)
498 KOG1498 26S proteasome regulat 25.3 9E+02 0.019 26.2 14.5 97 930-1026 135-243 (439)
499 PF07720 TPR_3: Tetratricopept 25.3 2E+02 0.0044 18.7 4.5 13 971-983 11-23 (36)
500 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 3.9E+02 0.0084 24.4 7.8 63 239-302 7-69 (145)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-82 Score=772.69 Aligned_cols=686 Identities=19% Similarity=0.215 Sum_probs=612.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFM 259 (1041)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 259 (1041)
.++..+++.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.+|.+.+.++.+..++..+.+.+..++...+|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45667788899999999999999999999998888889889999999988888899999999988888888888888999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 001632 260 LSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKS 339 (1041)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 339 (1041)
+.+|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 9999999999999999988853 678889999999999999999999999998888889999999999998888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 340 DEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 340 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
+.+.+++..|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88999999888888888988999999999999999999999988864 57888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhH
Q 001632 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGS 499 (1041)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 499 (1041)
.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ++..+
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s 356 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVS 356 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeee
Confidence 988899999999999999999999999999999998889999999999999999999999999999988753 78889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 001632 500 CNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHG 579 (1041)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 579 (1041)
|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g----------------- 419 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG----------------- 419 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999887774
Q ss_pred cCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCC
Q 001632 580 GCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGY 659 (1041)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 659 (1041)
+
T Consensus 420 -------------------------------------------------------------------------------~ 420 (857)
T PLN03077 420 -------------------------------------------------------------------------------L 420 (857)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 660 ILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILV 739 (1041)
Q Consensus 660 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 739 (1041)
.++..++++++++|+++|++++|.++|+.+. .+|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||+.++
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 5556677788888888888888888888876 46778888888888888888888888888875 4788888888888
Q ss_pred HHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 001632 740 NTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSL 819 (1041)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 819 (1041)
.+|++.|. ++.+.+++..+.+.|+.+
T Consensus 497 ~a~~~~g~------------------------------------------------------l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 497 SACARIGA------------------------------------------------------LMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHhhhch------------------------------------------------------HHHhHHHHHHHHHhCCCc
Confidence 88777664 444555555666777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
|..++|+|+++|+++|++++|.++|+++ .||.++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 8999999999999999999999999988 47999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001632 900 AYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIE 978 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 978 (1041)
+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| .+.||..+|++|+.+|..+|+.+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999 6899999999999999999999999999999998 37899999999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc---cchhcccccccC
Q 001632 979 EGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI---PFMKNLEVGSKI 1038 (1041)
Q Consensus 979 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~---~~~~~~~~~~~~ 1038 (1041)
.|....+++.+..|.++..|..++++|...|+|++|.++++.|++.|+ |.+.+++++.++
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 999999999999999999999999999999999999999999999998 578888888765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-78 Score=733.04 Aligned_cols=748 Identities=18% Similarity=0.214 Sum_probs=669.6
Q ss_pred CCHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 148 LSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCT 227 (1041)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 227 (1041)
.++..++..+.+.|++++|..+|+.|.. .+..|+..+|..++.+|.+.+.++.|.+++..+.+.+..++...+|++|.+
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 4456778899999999999999999975 478899999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 001632 228 YARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEA 307 (1041)
Q Consensus 228 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 307 (1041)
|++.|+.+.|+.+|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999999999999997 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001632 308 LKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF 387 (1041)
Q Consensus 308 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 387 (1041)
.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999996 468889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYI 467 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 467 (1041)
|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .||..+|+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 46789999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.++.+|++.|++++|.++|++|.+.+. ||..+|+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.|+.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
++++|.++|++|.+.
T Consensus 439 ~~~~A~~vf~~m~~~----------------------------------------------------------------- 453 (857)
T PLN03077 439 CIDKALEVFHNIPEK----------------------------------------------------------------- 453 (857)
T ss_pred CHHHHHHHHHhCCCC-----------------------------------------------------------------
Confidence 999999999988643
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDA 706 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1041)
|..++++++.+|++.|+.++|..+|++|..+..||..+|+.++.+
T Consensus 454 -----------------------------------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a 498 (857)
T PLN03077 454 -----------------------------------DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498 (857)
T ss_pred -----------------------------------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 345778888999999999999999999888889999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHH
Q 001632 707 YAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFA 786 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 786 (1041)
|++.|..+.+.+++..+.+.|+.+|..++++++..|++.|++++|..+|..+ .+|.++||++|.+|.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~------- 566 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVA------- 566 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999886 6899999999997554
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCcccHHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ-EEGIKPGLISYNIIINV 865 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~ 865 (1041)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++
T Consensus 567 ------------~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 567 ------------HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred ------------cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 55666677777777899999999999999999999999999999999999 67999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.|+...+++.+.. |.+...|..|...|+..|+|++|
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHH
Confidence 999999999999999983 78999999999999999999999999999999853 44556788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH----HHH----hcCChHHHHH----HHHHHHh-ccCChHH-HH-----HHHHHHHH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLK----GYM----DHGYIEEGIN----LFEEVRE-SSESDKF-IM-----SAAVHLYR 1006 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~----~~~----~~g~~~~A~~----~~~~~~~-~~~~~~~-~~-----~~l~~~~~ 1006 (1041)
.++.+.|.+.|+.+++.+...-+. .+. .+-+.++-.. +..++.+ +..||.. .+ ..--.++.
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~ 790 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence 999999999999987754322111 111 1112233333 3333433 2333321 11 11223566
Q ss_pred hcCChhHHHHHHHHhhccCccchhcccccc
Q 001632 1007 YAGKEHEANDILDSMNSVRIPFMKNLEVGS 1036 (1041)
Q Consensus 1007 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 1036 (1041)
|.-+..-|..++..=....|.+.|||+||.
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~ 820 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCE 820 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCc
Confidence 777788888888876666678999999986
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-65 Score=599.01 Aligned_cols=537 Identities=15% Similarity=0.221 Sum_probs=294.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGI-VPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVI 295 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 295 (1041)
+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 344444555555555555555555555555443 23444444445555555555555555544432 4455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 296 SSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYS 375 (1041)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 375 (1041)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 376 KALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQ--LGLLSDEKTYLAMAQVHLTSRNVEKALDVIEL 453 (1041)
Q Consensus 376 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 453 (1041)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555543 34444555555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001632 454 MKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533 (1041)
Q Consensus 454 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 533 (1041)
|.+.++.|+..+|+.++.+|++. |++++|.++|++|.+.|+.||..
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~----------------------------------G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQK----------------------------------GDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc----------------------------------CCHHHHHHHHHHHHHcCCCCCHH
Confidence 54444444444444444444444 44444444444444444555555
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcc
Q 001632 534 LYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDD 613 (1041)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1041)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G--------------------------------------------------- 679 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQG--------------------------------------------------- 679 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 55555555555555555555555544442
Q ss_pred cHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-cC
Q 001632 614 NFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAAT-VS 692 (1041)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~ 692 (1041)
+.|+..+|++++.+|+++|++++|.++|+.|. .+
T Consensus 680 ---------------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 680 ---------------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 22333344444444444555555555555443 34
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH
Q 001632 693 CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT 772 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 772 (1041)
..||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|..++..|.+.|+.||..+|+.
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46778888888888999999999999999998888889999999999999999999999999999988899999989988
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYG------RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSE 846 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 846 (1041)
++..|. +++++|.++.+.+..+. ..+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.
T Consensus 795 LIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 795 ITGLCL--RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred HHHHHH--HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 886543 23444444443333221 1112234555555555555555555555555544445555555555555
Q ss_pred HHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 847 MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 847 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
|...+..|+..+|+++++++.+. .++|..+|++|.+.|+.|+.
T Consensus 873 m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 873 LGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 54444444455555555544211 23455555555555555544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-64 Score=594.82 Aligned_cols=422 Identities=13% Similarity=0.226 Sum_probs=291.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 150 FREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYA 229 (1041)
Q Consensus 150 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 229 (1041)
+..++..|.+.|++++|+++|++|....-..++...++.++.+|.+.|.+++|.++|+.|.. ||..+|+.+|.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 34444555556677777777777765433455666666666777777777777776666652 66677777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 001632 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALK 309 (1041)
Q Consensus 230 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 309 (1041)
+.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766767777777777777777777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001632 310 TFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRS--RGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF 387 (1041)
Q Consensus 310 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 387 (1041)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777777667677777777777777777777777777777754 456667777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYI 467 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 467 (1041)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++.|.+.|+.|+..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 76677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.|+.+|++.|++++|.++|++|.+.+. |+..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 777777777777777777777766665 6667777777777777777777777777766667777777777777777777
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCK 575 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 575 (1041)
+++.|.++|.+|.+.|+.||..+++.++.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777766666666555555443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-58 Score=544.21 Aligned_cols=484 Identities=20% Similarity=0.277 Sum_probs=400.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG-LLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVML 470 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 470 (1041)
+..+|+.+|..|.+.|++++|.++|+.|...+ ..||..+|+.++.++.+.++.+.+..++..|.+.|+.||..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666666666666666666543 45666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 001632 471 QCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 471 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 666666666666666666643 67777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCC
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAG 630 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 630 (1041)
+.+++..+.+.
T Consensus 243 ~~~l~~~~~~~--------------------------------------------------------------------- 253 (697)
T PLN03081 243 GQQLHCCVLKT--------------------------------------------------------------------- 253 (697)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 88887776665
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 001632 631 GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710 (1041)
Q Consensus 631 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 710 (1041)
|+.+|..++++++++|+++|++++|.++|+.+. .+|+.+||+|+.+|++.
T Consensus 254 ---------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 254 ---------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH 303 (697)
T ss_pred ---------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC
Confidence 344555667777777788888888888887776 46788888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001632 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 711 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~------------------------------------------- 340 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL------------------------------------------- 340 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-------------------------------------------
Confidence 8888888888888888888888888888888777664
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 870 (1041)
+++|.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|. +||.++||+||.+|++.|
T Consensus 341 -----------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 341 -----------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHG 405 (697)
T ss_pred -----------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcC
Confidence 44455555666677788999999999999999999999999999996 479999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 871 LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK-QGIPPSCTHVNHLLSAFSKAGLMAEATRVY 949 (1041)
Q Consensus 871 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 949 (1041)
+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 689999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc---
Q 001632 950 NESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI--- 1026 (1041)
Q Consensus 950 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--- 1026 (1041)
++| ++.|+..+|++|+.+|..+|+++.|..+++++.+..|.+..+|..++++|++.|++++|.+++++|.+.|+
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 876 58899999999999999999999999999999988888889999999999999999999999999999998
Q ss_pred cchhcccccccC
Q 001632 1027 PFMKNLEVGSKI 1038 (1041)
Q Consensus 1027 ~~~~~~~~~~~~ 1038 (1041)
+.+.+++++.++
T Consensus 563 ~g~s~i~~~~~~ 574 (697)
T PLN03081 563 PACTWIEVKKQD 574 (697)
T ss_pred CCeeEEEECCeE
Confidence 566677776653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.1e-57 Score=533.41 Aligned_cols=397 Identities=17% Similarity=0.259 Sum_probs=284.0
Q ss_pred CHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 149 SFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTY 228 (1041)
Q Consensus 149 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 228 (1041)
++..++..+.+.|++++|+++|++|....++.|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566667777777777777777777655566777777777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 001632 229 ARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEAL 308 (1041)
Q Consensus 229 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (1041)
++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 777777777777777753 6777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001632 309 KTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK 388 (1041)
Q Consensus 309 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 388 (1041)
+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777777777777777777777743 466677777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIV 468 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 468 (1041)
+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|+.|.+ +|..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777776643 45566666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 001632 469 MLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRK-DQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 469 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g 546 (1041)
++.+|++.|+.++|.++|++|.+.|. ||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++..|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 66666666666666666666666555 5666666666666666666666666666643 355566666666666666666
Q ss_pred ChhhHHHHHHH
Q 001632 547 MVTDAEQFVEE 557 (1041)
Q Consensus 547 ~~~~A~~~~~~ 557 (1041)
++++|.+++++
T Consensus 477 ~~~eA~~~~~~ 487 (697)
T PLN03081 477 LLDEAYAMIRR 487 (697)
T ss_pred CHHHHHHHHHH
Confidence 66666555543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-45 Score=460.13 Aligned_cols=819 Identities=12% Similarity=0.041 Sum_probs=611.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWG 232 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 232 (1041)
+..++..+|++++|...|+.+.... +++......+.+++...|++++|...+.+........+...+..+...+...|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 4456677788888888887775432 23344455666777777888888777766543333344566677777777778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001632 233 NHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 233 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
++++|...|+++.+.. +.+...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|...|+
T Consensus 140 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 140 QLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888777654 3455667777777777888888888887776642 4456677777777777888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 313 EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAAD 392 (1041)
Q Consensus 313 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (1041)
+..+.+ +.+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++++.+.+.. +
T Consensus 218 ~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~ 294 (899)
T TIGR02917 218 KAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-Y 294 (899)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-c
Confidence 777664 335666777777777788888888888777665432 2223333344455677788888888777765422 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 393 EVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC 472 (1041)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 472 (1041)
...+..+...+...|++++|...|..+.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 372 (899)
T TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEA 372 (899)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 33444455666777888888888877776532 345566677777777888888888887776654 3455667777777
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 001632 473 YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAE 552 (1041)
Q Consensus 473 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 552 (1041)
+...|++++|.+.|+++.+..+.+...+..+..++...|++++|...++.+.+.... .......++..+.+.|++++|.
T Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHH
Confidence 778888888888888777776666777777777777888888888888777665322 2344555667777788888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcC-Cc
Q 001632 553 QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTA-GG 631 (1041)
Q Consensus 553 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 631 (1041)
.++..+.... | .+...+..++..|...|++++|.+.+++.++.. .+
T Consensus 452 ~~~~~~~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 498 (899)
T TIGR02917 452 AAAKKLEKKQ--P-------------------------------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498 (899)
T ss_pred HHHHHHHHhC--C-------------------------------CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Confidence 8877776541 1 122344455566666777888888888877653 34
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 001632 632 SSVVSQLICKFIRDGMRLTFKFLMKL---GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYA 708 (1041)
Q Consensus 632 ~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 708 (1041)
...+..++..+...|+.++|....+. ..+.+..++..+...+.+.|+.++|..+++.+....+.+...+..++..|.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 44666677777788888877773322 123456677777777888888888888888866556667777777888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 709 KCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 709 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
..|++++|..+++++.... ..+..+|..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877653 33566777778888888888888888887776553 244567777777888888888888
Q ss_pred HHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 789 IYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 789 ~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.++++. .+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++.+. .
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 887765 5677889999999999998876 567788889999999999999999999999987 4
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 933 (1041)
|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.++|+++.+.+ +++...++.++
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 56677888999999999999999999999886 56788889999999999999999999999999875 66778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..+...|+ .+|+++++++++. .+.++.++..+..++...|++++|+.+++++.+..|.++.++..++.+|.+.|++++
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 99999999 8899999999885 344677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 001632 1014 ANDILDSMNS 1023 (1041)
Q Consensus 1014 A~~~~~~~~~ 1023 (1041)
|.+++++|.+
T Consensus 890 A~~~~~~~~~ 899 (899)
T TIGR02917 890 ARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhC
Confidence 9999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-44 Score=452.20 Aligned_cols=823 Identities=14% Similarity=0.087 Sum_probs=701.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWG 232 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 232 (1041)
....+..+|+++.|...|+..... .+.+...+..+..++.+.|++++|...++.+.+.+. ++...+..+..++...|
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQK--DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHHHHHHCC
Confidence 345677899999999999988754 345667788899999999999999999999998765 34556677888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001632 233 NHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 233 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
++++|...+........+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999876544445566788888899999999999999999998764 3456788899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 313 EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAAD 392 (1041)
Q Consensus 313 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (1041)
++.+.+ +++...|..+...+...|++++|...|++..+.+. .+..++..++..+...|++++|...++.+.+.... +
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-S 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 998874 45677888889999999999999999999987643 36778888999999999999999999999886433 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 393 EVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC 472 (1041)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 472 (1041)
...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344444555667889999999999999876532 23445556777889999999999999998764 3456677888899
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 001632 473 YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAE 552 (1041)
Q Consensus 473 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 552 (1041)
+...|++++|...+..+....+.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 9999999999999999998888888999999999999999999999999998763 346777888899999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcC-Cc
Q 001632 553 QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTA-GG 631 (1041)
Q Consensus 553 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 631 (1041)
..+..+.+.+ |+. ......++..|...|++++|.++++.+.... .+
T Consensus 418 ~~~~~a~~~~--~~~-------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 464 (899)
T TIGR02917 418 ADLETAAQLD--PEL-------------------------------GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464 (899)
T ss_pred HHHHHHHhhC--Ccc-------------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 9999987763 221 1123345566778899999999999998864 45
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 001632 632 SSVVSQLICKFIRDGMRLTFKFLMKLG---YILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYA 708 (1041)
Q Consensus 632 ~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 708 (1041)
...+..+...+...|+.++|....+.. .+.+...+..++..+...|++++|.+.|+.+....+.+..++..+...+.
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 568889999999999999999854432 34456678888999999999999999999988777888999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 709 KCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 709 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
+.|+.++|...++++...+ ..+...+..+...+...|++++|..+++.+.+..+ .+...|..++..+...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 23566788889999999999999999999987654 466789999999999999999999
Q ss_pred HHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 789 IYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 789 ~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.++++. .|.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ .
T Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 999876 6778999999999999998865 5668899999999999999999999999999874 3
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 933 (1041)
.+...+..+...+...|++++|++.|+++.+. .|+..++..++.++.+.|++++|.+.++.+.+.. +.+...+..++
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45677888999999999999999999999885 4555778888999999999999999999999864 66778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..|...|++++|++.|+++++. .+.++.++..++..+...|+ .+|+.+++++.+..|.++..+..++.+|...|++++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999986 45678899999999999999 889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcc
Q 001632 1014 ANDILDSMNSVRIP 1027 (1041)
Q Consensus 1014 A~~~~~~~~~~~~~ 1027 (1041)
|.++++++.+.+..
T Consensus 856 A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 856 ALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.8e-26 Score=283.66 Aligned_cols=667 Identities=11% Similarity=0.073 Sum_probs=336.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH----------
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDE-IAC---------- 221 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~---------- 221 (1041)
-.......++.+.|.+.++.+.... +-++..+..+++.+.+.|+.++|.+.+++..+.. |+. ...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcC
Confidence 3445556777888888877665322 2345566777777788888888888888877664 322 211
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 222 ------GTMLCTYARWGNHKAMLTFYSAVKERGIVPSTA-VFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 222 ------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
..+...+.+.|++++|.+.|+.+.+.+ +++.. ............|+.++|++.++++.+.. +-+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 112223445555555555555554432 22211 11111111122355555555555555432 2233444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 001632 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPS-NYTCASLLSLYYKNEN 373 (1041)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 373 (1041)
...+...|+.++|+..|+++.... +.. ...+...+..+...+..++ ...+...+..+-....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 555555555555555555554321 100 0001111111111111111 1111111211111222
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 374 YSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIEL 453 (1041)
Q Consensus 374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 453 (1041)
...|...+..+......|+.. .......+...|++++|...|++..+... .+...+..+...|.+.|++++|+..|++
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444454443332222221 12234555667777777777777766432 2566666777777777777777777777
Q ss_pred HHhCCCCC-CHHHH------------HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 454 MKSRNMWL-SRFAY------------IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFI 520 (1041)
Q Consensus 454 ~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 520 (1041)
..+..... ....+ ......+.+.|++++|+..|+++....+.+...+..+..++...|++++|.+.|
T Consensus 329 Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66543211 11111 112334556677777777777777666656666666667777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhh
Q 001632 521 AHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLM 600 (1041)
Q Consensus 521 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1041)
+++.+.. +.+...+..+...+. .++.++|..+++.+....
T Consensus 409 ~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~-------------------------------------- 448 (1157)
T PRK11447 409 QQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ-------------------------------------- 448 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--------------------------------------
Confidence 7766542 223444444555443 345566665555432210
Q ss_pred HHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 001632 601 ALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLK 680 (1041)
Q Consensus 601 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 680 (1041)
+. .... . .. ......+..+...+...|+++
T Consensus 449 -----------------------------~~--~~~~-------------~----~~--~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 449 -----------------------------RR--SIDD-------------I----ER--SLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred -----------------------------HH--HHHH-------------H----HH--HhhhhHHHHHHHHHHHCCCHH
Confidence 00 0000 0 00 001123445667778889999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhcc
Q 001632 681 EAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQ 760 (1041)
Q Consensus 681 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 760 (1041)
+|.+.|+++....|.+..++..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|+..++.+..
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 9999999977777778888888999999999999999999998875322 334444444456677888888888877654
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 761 DNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEA 840 (1041)
Q Consensus 761 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 840 (1041)
....++......-+. . ...+.....+...|+.++|+++++. .+.+...+..+...|.+.|++++|
T Consensus 558 ~~~~~~~~~l~~~l~-------~---~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 558 AQWNSNIQELAQRLQ-------S---DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred hhcChhHHHHHHHHh-------h---hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHH
Confidence 332222111110000 0 0011111123344445555444431 123333444455555555555555
Q ss_pred HHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 841 SLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 841 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
+..|++..+. .| +...+..++..|...|++++|++.++...+. .+.+......+..++...|++++|.++++.+++
T Consensus 623 ~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 623 RAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555543 22 2334444555555555555555555544432 122233334444445555555555555555544
Q ss_pred CCC--CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 920 QGI--PP---SCTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 920 ~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
..- +| +...+..++.++...|++++|++.|++.+
T Consensus 700 ~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 700 QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 210 11 11233344445555555555555555543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-26 Score=289.69 Aligned_cols=654 Identities=12% Similarity=0.066 Sum_probs=412.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH---------
Q 001632 221 CGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTY--------- 291 (1041)
Q Consensus 221 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--------- 291 (1041)
.-..++.+...++.+.|.+.++++.... +.++..+..++..+...|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 4455777888889999999999887764 4567788888888888999999999999888754 432221
Q ss_pred --------HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 292 --------TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEV-TYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCA 362 (1041)
Q Consensus 292 --------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 362 (1041)
..+...+.+.|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|+++.+.... +...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 222335666777777777777776553 22221 1111111222347777777777777665322 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001632 363 SLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSD-EKTYLAMAQVHLTS 441 (1041)
Q Consensus 363 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (1041)
.+...+...|+.++|...++++.+.. +.. ...+...+..+...+..+. ...+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 66667777777777777777765532 110 0111111111111111111 11122222222222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 442 RNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIA 521 (1041)
Q Consensus 442 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (1041)
...+.|...+.........|... .......+...|++++|+..|++..+..+.+...+..+..++.+.|++++|...|+
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33445555555544432233322 12334556677888888888888887777777778888888888888888888888
Q ss_pred HHHHcCCCCC-HHHHHH------------HHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCccccc
Q 001632 522 HIRKDQVDFD-EELYRS------------VMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFG 588 (1041)
Q Consensus 522 ~~~~~~~~~~-~~~~~~------------ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 588 (1041)
+..+...... ...+.. ....+.+.|++++|...|+++.+.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------------------------- 380 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------------------------- 380 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------------
Confidence 7766432211 111111 122334444444454444444433
Q ss_pred chhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHH
Q 001632 589 DKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTAS 668 (1041)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 668 (1041)
.+ .+...+..
T Consensus 381 ----------------------------------------~P------------------------------~~~~a~~~ 390 (1157)
T PRK11447 381 ----------------------------------------DN------------------------------TDSYAVLG 390 (1157)
T ss_pred ----------------------------------------CC------------------------------CCHHHHHH
Confidence 11 23344555
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA--------LDAVAISILVN 740 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~l~~ 740 (1041)
+...|...|++++|++.|+++....+.+...+..+...|. .++.++|..+++.+...... .....+..+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6667777777777777777766555666666666666664 34667777776654322100 01123444556
Q ss_pred HHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC
Q 001632 741 TLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLD 820 (1041)
Q Consensus 741 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 820 (1041)
.+...|++++|+..+++.++..+. +...+..+... |.+.|++++|...|+++.+.. +.+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~-------------------~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD-------------------LRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 677778888888888887776654 23334444443 344555556666666655543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL---------ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
...+..+...+.+.++.++|...++++......++. ..+..+++.+...|+.++|+++++. .+.+.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 555555566677788888888888776432111111 1123456778899999999999872 35566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 971 (1041)
..+..+...+.+.|++++|++.|+++++.. |.+...+..++.+|...|++++|++.++.+++. .+.+...+..+..++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAW 681 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHH
Confidence 677888899999999999999999999864 556678899999999999999999999998764 223566777788889
Q ss_pred HhcCChHHHHHHHHHHHhccCCh------HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 972 MDHGYIEEGINLFEEVRESSESD------KFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
...|++++|+.+++++....+.+ +.++..++.++...|++++|++.+++...
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999988765433 34667779999999999999999998864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.2e-24 Score=254.50 Aligned_cols=224 Identities=10% Similarity=0.052 Sum_probs=167.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHHcCCHHHHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI-SYNIIINVYAAAGLYNEVE 876 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 876 (1041)
..|++++|+..|+++... +|+...+..+...+.+.|+.++|...+++..+.. |+.. .+..+...+...|++++|+
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 345555555555555443 3444455666777888888888888888888753 3332 2222233344558999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
..+++..+. .|+...+..+..++.+.|++++|+..+++.++.. |.+...++.++.++...|+.++|++.+++.++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l- 672 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG- 672 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999888874 5677778888888889999999999999988864 445567888888888899999999999988874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccch
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFM 1029 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 1029 (1041)
.+-+...+..+..++...|++++|+..++++.+..|.++.+....+++..+..+++.|.+-+++.-.....-+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 2336778888888888999999999999998888888888888888888888888888888877766555544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.9e-24 Score=252.40 Aligned_cols=628 Identities=10% Similarity=-0.004 Sum_probs=399.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001632 335 KHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414 (1041)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (1041)
..|++++|+..|++..+.... +..++..|...|...|++++|+..+++..+.. |+...|..++..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHH
Confidence 448888888888888776543 36677778888888888888888888888763 3433343333222 77888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHH
Q 001632 415 TFAETEQLGLLSDEKTYLAMAQV--------HLTSRNVEKALDVIELMKSRNMWLSRFAYIVM-LQCYVMKEDLGSAEGT 485 (1041)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~ 485 (1041)
+++++.+.... +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|...+++++|++.
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888876433 34444444443 5554 44444444 3333334445545544 7888888888888888
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 001632 486 FQTLAKTGLPDAGSCNDMLNLYIK-LDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSL 564 (1041)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 564 (1041)
+.++.+.++.+......|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|..++.++......
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 888888887777777777777777 366 777777553 23357788888888899999999999888887766433
Q ss_pred -CCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 001632 565 -KDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFI 643 (1041)
Q Consensus 565 -p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 643 (1041)
|+..++...+....... ..+-........+.-......++..+..+++++.+.++ ++..+..+....-.....
T Consensus 280 ~~~~~~~~~~l~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANP--VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEMLEERYAVSV 353 (987)
T ss_pred CCccHHHHHHHHhccCch--hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchHHHHHHhhcc
Confidence 66666665555444332 11111112222233333334456777777777766544 223333332211111112
Q ss_pred HcCCHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcC---CCCChHHHHHHHHHHHhcCChh---
Q 001632 644 RDGMRLTFKFLMK---LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVS---CKPGKLVLRSMIDAYAKCGKAE--- 714 (1041)
Q Consensus 644 ~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~--- 714 (1041)
..+...++..... ...+.+.....-+.....+.|+.++|..++...... ...+.....-++..|.+.+...
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 2233333333111 111224444444444555556666666666654321 0112233445555555555522
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH---HHHHHhccCCCC-CChhhHHHHHHHHHhcCChhHHHHHH
Q 001632 715 DVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAE---IIIHNSFQDNLD-LDTVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 715 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
++..+-..+-. ..- +.-.|+..++. ..+.......+. -+...|..+...+.
T Consensus 434 ~~~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~------------ 488 (987)
T PRK09782 434 KVAILSKPLPL-------AEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR------------ 488 (987)
T ss_pred HHHHhcccccc-------chh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH------------
Confidence 22222211111 111 11112222222 222222222111 13444555554332
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 870 (1041)
. ++.++|+..|.+..... |+......+...+...|++++|...|+++... .|+...+..+..++.+.|
T Consensus 489 -------~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 489 -------D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred -------h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 2 56666777666665543 55444444555567899999999999998664 455566777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 871 LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 871 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
+.++|.+.+++..+.+ +.+...+..+.......|++++|+..+++.++. .|+...+..++.++.+.|+.++|+..++
T Consensus 557 d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998853 333333444444555679999999999999985 4778899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 951 ESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 951 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
+.++. .+.+...+..+...+...|++++|+..++++.+..|.++.++..++.+|...|++++|+..+++..+..
T Consensus 634 ~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 634 AALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99985 233677888888899999999999999999999999999999999999999999999999999987654
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-21 Score=214.44 Aligned_cols=688 Identities=13% Similarity=0.084 Sum_probs=403.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHH-HHHHHHHHHHhcC-----------ChHHHHHHHHH
Q 001632 182 CVVAYTILLRLYGQVGKIKLAEQTFLEMLEA------GCEPDEI-ACGTMLCTYARWG-----------NHKAMLTFYSA 243 (1041)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~-~~~~li~~~~~~g-----------~~~~a~~~~~~ 243 (1041)
-..+|..+...|.+.|..++...+++.-... ++..+.. .++.+...|...+ .+..|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3456888888999999999999988876511 1111111 1222222222221 12223333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CC
Q 001632 244 VKERGIVPSTAVFNFMLSSLHKKSY--HRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKST--GF 319 (1041)
Q Consensus 244 m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~ 319 (1041)
.-......+.. +..--..|...|. .+.|.+.|....+.. +++.-.+-.-.......|++..|+.+|...+.. ..
T Consensus 120 A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 22211111110 1001111222232 466666666666542 233222222222333456777777777775543 22
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 001632 320 APEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKN---ENYSKALSLFSEMEKFKVAADEVIY 396 (1041)
Q Consensus 320 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 396 (1041)
.||... .+..++.+.|+.+.|...|.+..+.+.. ++.++..|.-.-... ..+..+.+++...-... .-|++..
T Consensus 198 ~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 198 KADVRI--GIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred CCCccc--hhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 334322 2334555677777777777777664321 233333332222222 23445555555554432 2255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001632 397 GLLIRIYGKLGLYEDAQKTFAETEQLGLL--SDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474 (1041)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 474 (1041)
+.|...|.-.|++..++.+...+...... .-...|..+.++|-..|++++|...|-+..+..-.--...+..|.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 77777777777777777777766654211 1123456677777777777777777766655432112234445666777
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 001632 475 MKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLD----LTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 475 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
+.|+++.+...|+.+.+..+.+..+...|...|...+ ..+.|..++....+.. +.|...|..+...+... +...
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 7777777777777777776666666666666666554 3344444444444331 23444444444333332 2222
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCC
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAG 630 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 630 (1041)
++.+|......
T Consensus 432 sL~~~~~A~d~--------------------------------------------------------------------- 442 (1018)
T KOG2002|consen 432 SLDAYGNALDI--------------------------------------------------------------------- 442 (1018)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 23333322211
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----CCCCh------HHH
Q 001632 631 GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVS----CKPGK------LVL 700 (1041)
Q Consensus 631 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~------~~~ 700 (1041)
+...+..+.+.+.+.+.......|.+.+|...|...... ..++. .+-
T Consensus 443 -----------------------L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 443 -----------------------LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred -----------------------HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 222333455556666666666666666666666554321 11111 112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001632 701 RSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGA 780 (1041)
Q Consensus 701 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 780 (1041)
..+...+-..++.+.|.+.|..++. ..+. .|++|.+.
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilk-----------------------------------ehp~--------YId~ylRl 536 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILK-----------------------------------EHPG--------YIDAYLRL 536 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH-----------------------------------HCch--------hHHHHHHh
Confidence 2233333344444445555554444 3321 33333333
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcccH
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLISY 859 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 859 (1041)
|. +-...++..+|...+..+...+ ..|+.++.-+.+.|.+..++..|.+-|....+. ...+|..+.
T Consensus 537 ~~------------ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 537 GC------------MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred hH------------HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 31 1122356666677777766654 466677777778888888898898877777664 223677777
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001632 860 NIIINVYAA------------AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT 927 (1041)
Q Consensus 860 ~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 927 (1041)
.+|.+.|.+ .+..++|+++|++.++. .+-|.+.-+-++-+++..|++++|..+|.++.+.. .....
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCc
Confidence 778887763 34578899999999886 56788888889999999999999999999999864 34667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGI-IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
+|-+++++|..+|++..|+++|+..++.-. ..+......|.+++++.|++.+|...+..++...|.|+.....++-+..
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 899999999999999999999999776533 3367888999999999999999999999999999999877666654433
Q ss_pred -------------------hcCChhHHHHHHHHhhccCcc
Q 001632 1007 -------------------YAGKEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 1007 -------------------~~g~~~eA~~~~~~~~~~~~~ 1027 (1041)
..+..++|.++|..|...+-.
T Consensus 762 kla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 762 KLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345677888888888776654
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-19 Score=195.20 Aligned_cols=568 Identities=15% Similarity=0.161 Sum_probs=352.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001632 339 SDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF--KVAADEVIYGLLIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 339 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (1041)
.+.|...|....+.. ++|.-.+-.-.......+++..|..+|..+... ...+|..+ .+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 467777777766543 223333333333344567777788887775442 23344322 2234556777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 001632 417 AETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPD 496 (1041)
Q Consensus 417 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 496 (1041)
.+..+.++ -++.++..|...-....+. ..+..+..++.........+
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~--------------------------------~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDS--------------------------------DSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccch--------------------------------HHHHHHHHHHHHHHhhcCCC
Confidence 77776543 1233333222222222221 12223333333333333344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 001632 497 AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVD--FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFC 574 (1041)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 574 (1041)
+.+.+.|.+.|...|+++.++.+...+...... .-...|-.+.++|...|+++.|..+|.+..+. .+|..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~------ 341 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF------ 341 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc------
Confidence 444444445555555555555555444433110 11223445555555566666665555554443 11110
Q ss_pred HHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHH
Q 001632 575 KILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFL 654 (1041)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 654 (1041)
.-+...+++.|+..|+++.+...|++++...|+
T Consensus 342 ------------------------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~----------------------- 374 (1018)
T KOG2002|consen 342 ------------------------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN----------------------- 374 (1018)
T ss_pred ------------------------cccccchhHHHHHhchHHHHHHHHHHHHHhCcc-----------------------
Confidence 122334555556666666666666666553322
Q ss_pred HHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----Hc
Q 001632 655 MKLGYILDDEVTASLIGSYGKHQ----KLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEAT----AQ 726 (1041)
Q Consensus 655 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 726 (1041)
+..+...|...|...+ ..+.|..+..+.....+.|...|..+...+....-+ .++..|..+. ..
T Consensus 375 -------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 375 -------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESK 446 (1018)
T ss_pred -------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHc
Confidence 2334444444444443 456677777776666677888888887777655443 3477776554 34
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccC---CCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh
Q 001632 727 GCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQD---NLDLDTV-AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL 802 (1041)
Q Consensus 727 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 802 (1041)
+-.+.....|.+.......|++.+|...|...... ...+|.. +.+ ...-|.........+++
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~--------------lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN--------------LTLKYNLARLLEELHDT 512 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch--------------hHHHHHHHHHHHhhhhh
Confidence 55567778888888888899999998888877655 1222221 000 00011111234556788
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 001632 803 DKALEMFNTARSLGLSLD-EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQA 881 (1041)
Q Consensus 803 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (1041)
+.|.++|..+.+.. |+ +..|--++-..-..+...+|...+.+..+. ..-++..+..+.+.|.+...+..|.+-|..
T Consensus 513 ~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 88999999988763 43 223333332222346788999999998875 234566677778888888888888887776
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001632 882 MQRD-GFSPNSFTYLSLVQAYTE------------AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 882 m~~~-g~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
..+. ...+|.++..+|++.|.+ .+..++|+++|.++++.+ |.|..+-|.++-+++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHH
Confidence 6553 233788998899887643 245688999999999874 67788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--CChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 949 YNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESS--ESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 949 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
|.+..+.. .-+..+|-.+...|...|+|..|+++|+...... ..++.++..|+.++...|++.+|.+.+......
T Consensus 669 FsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 669 FSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99998863 3356678889999999999999999999976643 456889999999999999999999988776543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-21 Score=200.28 Aligned_cols=308 Identities=17% Similarity=0.168 Sum_probs=236.8
Q ss_pred ccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 001632 675 KHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD-AVAISILVNTLTNHGKHEQAEI 753 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ 753 (1041)
..|++.+|...+.++....+--...|..|.-.+..+|+...|++.|++.++. .|+ ...|..|-..|...+.+++|+.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 4456666666666655444555566777777777777777777777777664 333 2355556666666666666666
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 754 IIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK 833 (1041)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 833 (1041)
.+.+.....+.. .+++..+.- +|...|.++-|+..|++.++.. +.-...|+.|.+++-.
T Consensus 274 ~Y~rAl~lrpn~-A~a~gNla~-------------------iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 274 CYLRALNLRPNH-AVAHGNLAC-------------------IYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHHHhcCCcc-hhhccceEE-------------------EEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHh
Confidence 666555443321 122222222 5677788888888888888764 3345789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAE 911 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 911 (1041)
.|++.+|...+.+.... .|+. .+.+.|.+.|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+
T Consensus 333 ~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred ccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHH
Confidence 99999999999999885 4543 6788999999999999999999999888 4454 556899999999999999999
Q ss_pred HHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 912 ETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
..|++.+. +.|+.. .|++++..|-..|+++.|++.|.+++. +.|. ....+.|...|-++|++.+|+.-|+++..
T Consensus 409 ~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 409 MCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999998 678865 899999999999999999999999998 5665 56788999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCChhH
Q 001632 990 SSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 990 ~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..|+.+.++-.+.+++.-..+|.+
T Consensus 485 lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 485 LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888999999888766555555
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.7e-21 Score=195.63 Aligned_cols=331 Identities=19% Similarity=0.164 Sum_probs=267.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001632 665 VTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD-AVAISILVNTLT 743 (1041)
Q Consensus 665 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 743 (1041)
.+..+..++...|+.+.|.+.|.......|...-....+...+...|+.++|..-|.+.++. .|. .+.|+.|...+.
T Consensus 152 a~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 152 AYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFN 229 (966)
T ss_pred HHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHh
Confidence 44556666667777777777777755555545555566777778899999999999998875 343 457888888899
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
..|++..|+..+++..+-.+..- -.|-.|... |...+.+++|+..|.++.... +....+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV-------------------~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNV-------------------YKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcch-HHHhhHHHH-------------------HHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 99999999999999887655321 133344443 344455566666666666543 334457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT 902 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 902 (1041)
+..|...|-.+|.++-|+..+++.++. .|+. ..|+.|.+++-..|+..+|+..|.+.+.. .+--....+.|.++|.
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYR 365 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHH
Confidence 888888899999999999999999986 6665 78999999999999999999999999885 3344567888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 001632 903 EAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 903 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 980 (1041)
+.|++++|..+|....+ +.|... .+++|+..|-.+|++++|+.-|++.+. +.|. ...|+.+...|-..|+..+|
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999999 557654 789999999999999999999999987 7887 45899999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
++.+.+++...|.-+.+.+.|+.+|...|+..+|..-.+..+...
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999888889999999999999999999999998876644
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.4e-17 Score=195.08 Aligned_cols=257 Identities=19% Similarity=0.167 Sum_probs=160.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHH
Q 001632 710 CGKAEDVYLLYKEATAQG-CAL-DAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAA 787 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 787 (1041)
.+++++|...|++..+.+ ..| ....+..+...+...|++++|+..+++.+...+. ....|..+...+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~---------- 375 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMN---------- 375 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH----------
Confidence 345666666666666543 112 2234444455555566666666666655554332 122333333332
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Q 001632 788 SIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVY 866 (1041)
Q Consensus 788 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 866 (1041)
...|++++|+..|+++.+.. +.+..+|..+...|...|++++|...|++.++. .|+ ...+..+..++
T Consensus 376 ---------~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 376 ---------LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred ---------HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 33344555555555554443 445667777888888888888888888888775 343 45566677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-h-------HHHHHHHHHHh
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC-T-------HVNHLLSAFSK 938 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~ 938 (1041)
.+.|++++|+..|++.++. .+.+...++.+..++...|++++|++.|++.++.. |+. . .++..+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH
Confidence 8888888888888887764 34456677777788888888888888888877743 221 1 11112223334
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 939 AGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
.|++++|++++++.++. .| +..++..++..+.+.|++++|+.+|+++.+..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 67888888888887764 34 44567777788888888888888888877655543
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=3.2e-14 Score=155.76 Aligned_cols=545 Identities=16% Similarity=0.085 Sum_probs=304.7
Q ss_pred HHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 157 LKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKA 236 (1041)
Q Consensus 157 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 236 (1041)
|...|+.++|.+++.++.++. +.+...|-.|..+|-..|+.+.+...+-...-.. +.|...|..+.....+.|++..
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 334566666666666665543 2344556666666666666666665554433222 2244566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHH
Q 001632 237 MLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF----TYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 237 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
|.-.|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|.. +--.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666554 3444444445555666666666666666665543211211 22233444555555566666665
Q ss_pred HHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 313 EMKSTG-FAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAA 391 (1041)
Q Consensus 313 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (1041)
.....+ -.-+...++.++..+.+...++.|......+..+...+|..-+.+- ..++. .-..++ . ...++.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-~~~~~~-~-~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-EPNALC-E-VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-cccccc-c-CCCCCCc
Confidence 555421 1223344555666666666666666666555543333332222110 00000 000000 0 0112333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLL--SDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVM 469 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 469 (1041)
+..++. +.-++......+....+.....+.... -+...|.-+..+|.+.|++..|+.++..+......-+...|-.+
T Consensus 377 ~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 444422 222333444444444455555555533 34567888999999999999999999999887666678899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHH
Q 001632 470 LQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRK--------DQVDFDEELYRSVMKI 541 (1041)
Q Consensus 470 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~ 541 (1041)
..+|...|..+.|.+.|..++...+.+..+...|...+.+.|+.++|.+.+..+.. .+..|+..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999988542 2345556666666777
Q ss_pred HHhcCChhhHHHHHHHHhhCCC-----CCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHH
Q 001632 542 YCKEGMVTDAEQFVEEMGKNGS-----LKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFS 616 (1041)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1041)
+.+.|+.++-+.....|+...+ .|+..- .......-...+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k--------------------------------~r~~~~~~~~~~~-- 581 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKK--------------------------------KRRRAIAGTTSKR-- 581 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH--------------------------------HHHHhhccccccc--
Confidence 8888888886666666655310 010000 0000000000111
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHH----------HHHcCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 001632 617 KREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKF----------LMKLGYILDDE--VTASLIGSYGKHQKLKEAQD 684 (1041)
Q Consensus 617 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~ 684 (1041)
.+....+++....+.++...... ....++..+.+ .+..++..+++.+..++|..
T Consensus 582 --------------~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 582 --------------YSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred --------------cchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11222222222222222111111 22233333332 45667778888899999988
Q ss_pred HHHHhh--cCCCCChH----HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC--C-CHHHHHHHHHHHHccCCHHHHHHH
Q 001632 685 VFKAAT--VSCKPGKL----VLRSMIDAYAKCGKAEDVYLLYKEATAQ-GCA--L-DAVAISILVNTLTNHGKHEQAEII 754 (1041)
Q Consensus 685 ~~~~~~--~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 754 (1041)
+...+. ..+..+.. .-..++.+.+..+++..|.+.++.|... +.. | -...|+...+.+.+.++-.--..+
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887744 12222222 3345666777788999999988888765 111 1 123445455555555544333444
Q ss_pred HHHhccCC
Q 001632 755 IHNSFQDN 762 (1041)
Q Consensus 755 ~~~~~~~~ 762 (1041)
+..+....
T Consensus 728 ~~~~~~~~ 735 (895)
T KOG2076|consen 728 IMRLLVKN 735 (895)
T ss_pred HHHHhccC
Confidence 44443333
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=5.9e-18 Score=188.65 Aligned_cols=297 Identities=15% Similarity=0.104 Sum_probs=198.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCh
Q 001632 707 YAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLD---TVAYNTCIKAMLGAGKL 783 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 783 (1041)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+......++ ...+..++..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~------ 117 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY------ 117 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH------
Confidence 3445555555555555555421 1233455555555555555555555555554322111 12334444433
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc----ccH
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL----ISY 859 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~ 859 (1041)
.+.|++++|..+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+
T Consensus 118 -------------~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 118 -------------LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred -------------HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 34445555555555555432 456678888888888889999999888888876433221 134
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHH
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFS 937 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 937 (1041)
..++..+.+.|++++|++.|+++.+. .+.+...+..++..|.+.|++++|.++++++.+.+ |+ ...++.++.+|.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHH
Confidence 55677778888999999999888875 23445677778888888999999999999888753 33 346778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh---cCChhHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY---AGKEHEA 1014 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA 1014 (1041)
..|++++|.+.++++.+. .|+...+..++..+.+.|++++|+.+++++.+..|.+. .+..+...+.. .|+.++|
T Consensus 261 ~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhH
Confidence 999999999999988874 56666667788888889999999999988887766655 44444444443 5588889
Q ss_pred HHHHHHhhccCccchh
Q 001632 1015 NDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 1015 ~~~~~~~~~~~~~~~~ 1030 (1041)
..++++|.+.++...+
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999988887764433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=7.3e-17 Score=187.79 Aligned_cols=335 Identities=12% Similarity=0.006 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 001632 633 SVVSQLICKFIRDGMRLTFKFLMK---LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAK 709 (1041)
Q Consensus 633 ~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 709 (1041)
.-...++....+.|+..+|..+.. ...+.+......++......|++++|...++.+....|.+...+..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345566777778888887777432 22344455666666667778888888888888776667777778888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCAL-DAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
.|++++|...++++... .| +...+..+...+...|++++|...++.+....+.+....+. +.
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~-------------- 185 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CL-------------- 185 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HH--------------
Confidence 88888888888888775 23 34566667777788888888888777776655543332221 11
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 001632 789 IYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA 868 (1041)
Q Consensus 789 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 868 (1041)
.+...|++++|...++.+.+....++...+..+...+.+.|++++|+..+++..+... .+...+..+...|..
T Consensus 186 ------~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 186 ------SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQ 258 (656)
T ss_pred ------HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 1345678888888888877664334445555566777888888888888888877532 234566677888888
Q ss_pred cCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 869 AGLYNE----VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 869 ~g~~~~----A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
.|++++ |+..|++..+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++.+|...|++++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 888775 78888888774 34456677788888888888888888888888753 3344567778888888888888
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 945 ATRVYNESLAAGIIPDL-ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
|+..++++++. .|+. ..+..+..++...|++++|+..|+++.+..|.+.
T Consensus 337 A~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 337 ASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88888888763 4443 3334455677788888888888888777666553
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=4.4e-16 Score=185.62 Aligned_cols=334 Identities=11% Similarity=0.049 Sum_probs=212.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKH 748 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 748 (1041)
++..+...|+.++|...++++....|.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 333444444455555555544433444555 555555666666666666666666554221 223333444455555555
Q ss_pred HHHHHHHHHhccCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHC-CCC
Q 001632 749 EQAEIIIHNSFQDNLDLDT------VAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL---DKALEMFNTARSL-GLS 818 (1041)
Q Consensus 749 ~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~-~~~ 818 (1041)
++|+..++.+.. . |+. ......+...... .....+.+ ++|++.++.+.+. ...
T Consensus 167 e~Al~~l~~~~~-~--p~~~~~l~~~~~~~~~r~~~~~--------------~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 167 APALGAIDDANL-T--PAEKRDLEADAAAELVRLSFMP--------------TRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHhCCC-C--HHHHHHHHHHHHHHHHHhhccc--------------ccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 556555554433 1 110 0000000000000 00111223 6677777777753 112
Q ss_pred CCHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 001632 819 LDEK-A----YMNLVSFYGKAGKTHEASLLFSEMQEEGIK-PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSP--- 889 (1041)
Q Consensus 819 ~~~~-~----~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--- 889 (1041)
|+.. . ....+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+++|+++.+.....
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 1 111133456779999999999999887432 332 12235778999999999999999987642111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP------------PSC---THVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.......|..++...|++++|.+.++.+.+.. | |+. ..+..++..+...|+.++|++.+++++.
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445666777889999999999999998752 2 221 2455677888999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 955 AGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 955 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
. .+.+...+..++..+...|++++|+..++++.+..|.+...+...+..+...|++++|+++++++.+.
T Consensus 388 ~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 388 N-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred h-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5 44467788888889999999999999999999989999999999999999999999999999988764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=5.6e-16 Score=184.71 Aligned_cols=305 Identities=12% Similarity=0.018 Sum_probs=200.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDA------VAISILVNTL 742 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~l~~~~ 742 (1041)
+...+...|+.++|...++++....|.+...+..+..++...|..++|+..++.+.. .|+. .....++...
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555554444455555555556666666666666666654443 1211 0111111111
Q ss_pred -----HccCCH---HHHHHHHHHhccCC-CCCChh-hHH-HHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 743 -----TNHGKH---EQAEIIIHNSFQDN-LDLDTV-AYN-TCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNT 811 (1041)
Q Consensus 743 -----~~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~ 811 (1041)
...+++ ++|+..++.+.+.. ..|+.. .+. ..+ +.+..+...|++++|+..|+.
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~----------------d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI----------------DRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH----------------HHHHHHHHhhhHHHHHHHHHH
Confidence 112233 66777777776541 122211 111 101 001122345678888888888
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 812 ARSLGLS-LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-----ISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 812 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
+.+.+.+ |+. ....+...|...|++++|+..|+++.+.. |.. .....+..++.+.|++++|+++++++.+.
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 8876532 322 22235778999999999999999988752 322 34556677889999999999999999874
Q ss_pred C-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 886 G-----------FSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 886 g-----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
. -.|+ ...+..+...+...|+.++|++.++++.+.. |.+...+..++.++...|++++|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 0122 1245567778899999999999999999863 56667889999999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 952 SLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 952 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
.++. .|+ ...+..++..+.+.|++++|+..++++.+..|.|+.+.
T Consensus 419 al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 419 AEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9984 564 66777777788999999999999999999999988553
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=8.1e-15 Score=158.94 Aligned_cols=763 Identities=13% Similarity=0.068 Sum_probs=410.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 001632 177 LSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVF 256 (1041)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 256 (1041)
.|..|+-++|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 378899999999999999999999988 8888887777777788888888888888777764 5778888
Q ss_pred HHHHHHHHhcCChhHHHHHHHH-Hh-------hCCCCCCHHHH--------------HHHHHHHHcCCCHHHHHHHHHHH
Q 001632 257 NFMLSSLHKKSYHRKVIDLWRQ-MM-------DKGVAPTDFTY--------------TLVISSFVKGSLLEEALKTFNEM 314 (1041)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~-m~-------~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 314 (1041)
..|..+|...|+... ++..++ |. ..|+.....-+ ..++....-.|.++.+++++..+
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888888887654 222222 21 12221111111 11222223334444444444433
Q ss_pred HHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001632 315 KSTGFA-PEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADE 393 (1041)
Q Consensus 315 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 393 (1041)
+-.... |-.+ .++-+.. ......++......-.-.|+..+|..++......|+.+.|..++.+|.+.|++.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 322100 1101 1221111 12223333333222111578888998888888899999999999999999888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHH
Q 001632 394 VIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRF----AYIVM 469 (1041)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l 469 (1041)
+-|-.|+-+ .++...++.++.-|.+.|+.|+..|+...+..+..+|.... .+.+.+.+.. .+..+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~--------~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY--------GEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh--------cccccchhhhhhHHHHHHH
Confidence 766666655 77888888888888888999998888877666666544221 1122222221 12222
Q ss_pred HHHHHhcC-----CHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHH
Q 001632 470 LQCYVMKE-----DLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD--QV-DFDEELYRSVMKI 541 (1041)
Q Consensus 470 l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~ll~~ 541 (1041)
+.+..... ........+.+..-.|.....+.-.+..-...+|.-++..++-..+..- .. .-++..|..++.-
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 22211111 1111222222222223311112222222223366666666666655321 11 1234455555555
Q ss_pred HHhcCChhhHHHHHH--HHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHH
Q 001632 542 YCKEGMVTDAEQFVE--EMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKRE 619 (1041)
Q Consensus 542 ~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 619 (1041)
|++.-+......++. +..+.. -+. .+.+....++....++..+.+..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~--l~s-----------------------------e~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLN--LNS-----------------------------EDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh--hch-----------------------------hhhHHHHHHHHHhCcchHHHHHh
Confidence 554322211111111 111110 000 00000111111111111000000
Q ss_pred HHHH----HHhhc-----CCchhHHHHHHHHHHHcCCHHHHHH---HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001632 620 KILK----LLLHT-----AGGSSVVSQLICKFIRDGMRLTFKF---LMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFK 687 (1041)
Q Consensus 620 ~~~~----~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 687 (1041)
.+.. +.... .+-....++++..+++.-+...+.. +.+...-+ ..|..+++.+....+++.|..+.+
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~ 515 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA--GLYALLIKLMDLHDKLEYALSFVD 515 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHhhhHHHHHHHHHHHhchh
Confidence 0000 00000 0112234555666666655555553 22222111 578888888888899999999888
Q ss_pred Hhh---cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhccCC
Q 001632 688 AAT---VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD--AVAISILVNTLTNHGKHEQAEIIIHNSFQDN 762 (1041)
Q Consensus 688 ~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 762 (1041)
++. .....|..-+..+.+.+.+.+...++..++.++.+.-...+ ..++-.+++.....|+.+.-.++.+-+...|
T Consensus 516 e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 516 EIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred hhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 865 34455666788888999999999999999988876422222 3345556666677787777777777666555
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHH
Q 001632 763 LDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNL---VSFYGKAGKTHE 839 (1041)
Q Consensus 763 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~ 839 (1041)
..-. ..++....+.++...|.+.++.. +.+-.-+-.+.+.+-++..++-..++.....+ +..|.+.|+..+
T Consensus 596 l~et----gPl~~vhLrkdd~s~a~ea~e~~--~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~ 669 (1088)
T KOG4318|consen 596 LSET----GPLWMVHLRKDDQSAAQEAPEPE--EQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVD 669 (1088)
T ss_pred hhhc----ccceEEEeeccchhhhhhcchHH--HHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccc
Confidence 4331 22333344556666666666653 34444445555555555543333333322221 334677777777
Q ss_pred HHHHHHHHHH---cCC---------CC---------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 840 ASLLFSEMQE---EGI---------KP---------GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 840 A~~~~~~m~~---~g~---------~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
|..+.+.--- .|- .| +......|+..|.+.|+++.|..+|.+++ +.|+..+...|.
T Consensus 670 a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LA 746 (1088)
T KOG4318|consen 670 AGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLA 746 (1088)
T ss_pred hhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHH
Confidence 7665532100 000 00 00111336778888999999999999887 677888888887
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 899 QAYTEAAK---YSEAEETINSMQKQG--IPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD 973 (1041)
Q Consensus 899 ~~~~~~g~---~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 973 (1041)
..+.+... +-++....+...+.. .+.+...|...+...++-.+.+.|.+.+++..++....+..++...++.+..
T Consensus 747 sIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~ 826 (1088)
T KOG4318|consen 747 SILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVK 826 (1088)
T ss_pred HHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHh
Confidence 77765543 334444444444421 1222223333344444445566888999998887555577788888887776
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
.. -..|....+ +.......-..++..+.+.-.+.||..
T Consensus 827 nd-~~aa~sha~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 827 ND-QLAAQSHAS----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred cC-HHHHHhccc----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 65 122221111 111122233345555566666666665
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2.8e-13 Score=142.16 Aligned_cols=613 Identities=9% Similarity=0.026 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001632 302 SLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLF 381 (1041)
Q Consensus 302 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 381 (1041)
+++..|.-++....+.+ +-+...|-+-...--..|.+..|..+...=.+. ++-+...|.-- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 56778888888888875 224456655555555677777777665543332 22234444332 3556667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 382 SEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWL 461 (1041)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 461 (1041)
...++.- +-....|- .+---..+...-.+++.+..+. ++.++..|- +-....+.+.|.-++.+..+-- +.
T Consensus 339 A~Avr~~-P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~ 408 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECC-PQ 408 (913)
T ss_pred HHHHHhC-CCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cc
Confidence 7777652 22222332 2222223344455666666654 333444443 3344556666887887776642 22
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHH
Q 001632 462 SRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHI----RKDQVDFDEELYRS 537 (1041)
Q Consensus 462 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ 537 (1041)
+.. |.-++.+...++.|..++++..+.-+.+...|.+-...--.+|+.+...+++++- ...|+..+...|..
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 333 3445667777888999999988887778888888888778888888888887764 44577778777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHH
Q 001632 538 VMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSK 617 (1041)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1041)
=...|-..|..-.+..++...+..|+.- +...+.|..-...+.+.+.++-
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEe------------------------------ed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEE------------------------------EDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhcccc------------------------------chhHhHHhhhHHHHHhcchHHH
Confidence 6666766666666555555555544321 1122233333344444444555
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCCh
Q 001632 618 REKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGK 697 (1041)
Q Consensus 618 a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 697 (1041)
|..++...+.. ++.+...+......--..|..++-..+|.++...+|...
T Consensus 535 arAVya~alqv------------------------------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae 584 (913)
T KOG0495|consen 535 ARAVYAHALQV------------------------------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE 584 (913)
T ss_pred HHHHHHHHHhh------------------------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence 55554444432 122233334444444455666666666666665556666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 698 LVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 698 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
..|-..+..+-..|+...|..++.++.+.... +...|-..+........+++|..+|.+....... ..+|.--+..
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~- 660 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANL- 660 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHH-
Confidence 66666666666666666666666666665322 4445555566666666666666666665554332 2222222221
Q ss_pred HhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-
Q 001632 778 LGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL- 856 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 856 (1041)
-.-.++.++|+++++..++. ++.-...|..+...+-+.++++.|...|..=.+. -|+.
T Consensus 661 ------------------er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~i 719 (913)
T KOG0495|consen 661 ------------------ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSI 719 (913)
T ss_pred ------------------HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCc
Confidence 11245677777777776664 2344557888888888888888888887765554 3444
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
..|..|.+.-.+.|.+-.|..+|++..-. -+.+...|...|..-.+.|+.+.|..+..+.++. ++.+-..|..-|.+.
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 55777777778888888999998888765 4667788888888888999999998888887765 466666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 937 SKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
-+.++-.+.+..+++ +..|+.....+...+....++++|...|+++....|.+..++.-+...+...|..++-.+
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 777775555554444 677888888888899999999999999999999999998999888999999999999999
Q ss_pred HHHHhhccCc
Q 001632 1017 ILDSMNSVRI 1026 (1041)
Q Consensus 1017 ~~~~~~~~~~ 1026 (1041)
++++-..+.-
T Consensus 873 v~~~c~~~EP 882 (913)
T KOG0495|consen 873 VLKKCETAEP 882 (913)
T ss_pred HHHHHhccCC
Confidence 9988766544
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=3.1e-16 Score=182.57 Aligned_cols=265 Identities=11% Similarity=0.082 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 664 EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT 743 (1041)
Q Consensus 664 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 743 (1041)
..+..+...+...|++++|...++.+....|.+...+..++.++...|++++|...++++......+ ...+.. +..+.
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~ 188 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFL 188 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHH
Confidence 3445556667777777788887777666566777788888888888888888888888776653322 222222 23467
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
..|++++|+..++.+.+..+.++...+..+...+. ..|++++|+..|+++.+.. +.+...
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~-------------------~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLC-------------------AVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 77888888888888776654444444433344333 4455556666666666554 456777
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHE----ASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
+..+...|...|++++ |...|++..+. .|+ ...+..+...+.+.|++++|+..+++..+. .+.+...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 8888888888998885 78888888875 444 456778888888999999999999988875 344455677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.+|.+.|++++|...|+.+.+.+ |+.. .+..++.++...|+.++|+..|+++++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888999999999998888753 5543 3445677888889999999999988774
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.4e-17 Score=181.66 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhCCCCCCHH
Q 001632 501 NDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCK---EGMVTDAEQFVEEMGKNGSLKDSK 568 (1041)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 568 (1041)
..++..+.+.|++++|..+++++.+. .|+...+..++..++. .|+.+++..++++|.+.++.|++.
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444432 3444455544444443 335555555555555554444443
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=3.3e-15 Score=175.24 Aligned_cols=435 Identities=11% Similarity=0.035 Sum_probs=286.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 186 YTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHK 265 (1041)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 265 (1041)
+......+.+.|++++|.+.|.+.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556677788888888888887764 5667778888888888888888888888877764 3456678888888888
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSL 345 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 345 (1041)
.|++++|+..|......+-..+......+...+. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 8888888887766654322122111111111111 12223333333321 223333333322 2222222222211
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 346 YKDMRSRGLIPS-NYTCASLLSL---YYKNENYSKALSLFSEMEKFK-VAA-DEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 346 ~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
+....+ ..++ ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221111 1111 0111111111 123467889999999888764 222 4456777788888899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhH
Q 001632 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGS 499 (1041)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 499 (1041)
.+... .....|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...|++..+..+.+...
T Consensus 358 l~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 358 IELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 87532 245677888888889999999999999887764 3456788888889999999999999999999988888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 001632 500 CNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHG 579 (1041)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 579 (1041)
+..+..++.+.|++++|...|+...+. .+.+...+..+..++...|++++|+..|+...... |+...
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~---------- 502 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKP---------- 502 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Ccccc----------
Confidence 888999999999999999999998875 34467788888899999999999999998877652 11000
Q ss_pred cCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCC
Q 001632 580 GCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGY 659 (1041)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 659 (1041)
.
T Consensus 503 -------------------------------------------------------------------------------~ 503 (615)
T TIGR00990 503 -------------------------------------------------------------------------------M 503 (615)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 660 ILDD-EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 660 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
..+. ..+...+..+...|++++|..+++++....+.+...+..+...+...|++++|+..|++..+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0000 011112222334578888888888865555666677888888888888888888888887664
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.1e-13 Score=149.50 Aligned_cols=660 Identities=13% Similarity=0.090 Sum_probs=334.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 001632 261 SSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSD 340 (1041)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 340 (1041)
+.+...|+.++|..++.+.++.. +.....|..|...|-..|+.+.+...+-.....+ +.|...|..+.......|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444577777777777776652 3455667777777777777777766655444432 335566666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHH
Q 001632 341 EALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGL----LIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 341 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 416 (1041)
.|.-.|.+..+... ++...+---+..|-+.|+...|..-|.++.....+.|...+.. .++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777666532 2344444445566667777777777777666533223322222 244455555556666666
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 001632 417 AETEQL-GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTG-- 493 (1041)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 493 (1041)
+..... +-..+...++.++..+.+...++.|......+..+...+|..-+.+= .+ + ...+......+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~-----~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-R-----REEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-c-----cccccccccCCCC
Confidence 655542 12234455666666666666777766666665553333332211100 00 0 00000000011
Q ss_pred C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHH
Q 001632 494 L-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQ--VDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFI 570 (1041)
Q Consensus 494 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 570 (1041)
. .+..++ -+.-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++++|+.+|..+......
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~------ 446 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY------ 446 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc------
Confidence 0 222231 11222223333233333333333333 3344566777777777777777777777777665110
Q ss_pred HHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHH
Q 001632 571 QTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLT 650 (1041)
Q Consensus 571 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 650 (1041)
.....|..++..|...+.+++|.+.++.++...|
T Consensus 447 --------------------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-------------------- 480 (895)
T KOG2076|consen 447 --------------------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-------------------- 480 (895)
T ss_pred --------------------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------------
Confidence 0112333333444444444444444444333211
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhc---------CCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 001632 651 FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV---------SCKPGKLVLRSMIDAYAKCGKAEDVYLLYK 721 (1041)
Q Consensus 651 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 721 (1041)
.+..+-.+|...+-+.|+.++|.+.++.+.. ..+++..+.-...+.+.+.|+.++-+.+..
T Consensus 481 ----------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 481 ----------DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred ----------CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1333444555555555566655555555321 112222333333444444455444333333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCC
Q 001632 722 EATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRK 801 (1041)
Q Consensus 722 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 801 (1041)
.|+..+.. ...+ + .+..++... .....+..........++.+..+.++......-.
T Consensus 551 ~Lv~~~~~------~~~~--f---~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l----------- 606 (895)
T KOG2076|consen 551 TLVDDFLK------KRYI--F---PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL----------- 606 (895)
T ss_pred HHHHHHHH------HHHh--c---chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc-----------
Confidence 33321100 0000 0 000000000 0000000111111111222222221111000000
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCcc----cHHHHHHHHHHcCCHHH
Q 001632 802 LDKALEMFNTARSLGLSLDE--KAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-KPGLI----SYNIIINVYAAAGLYNE 874 (1041)
Q Consensus 802 ~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~ 874 (1041)
... ..+......++..+. ..+.-++..+++.+++++|+.+...+..... .-+.. .-...+.+....+++..
T Consensus 607 -~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 607 -SDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred -cch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 000 111222223332222 2445678889999999999999998887522 11222 12345667788999999
Q ss_pred HHHHHHHHHHc-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhcCCHHHHHHH
Q 001632 875 VEKLIQAMQRD-GF--SPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC--THVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 875 A~~~~~~m~~~-g~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
|...+..|... ++ .|. ...|+...+...+.|+-.-=...+..+... +|+. ..+...++.+...+.+.-|+..
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHH
Confidence 99999999874 11 122 223454444445555433333333333332 2322 3333445666778999999998
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH----------hcCChHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhcCChhHHH
Q 001632 949 YNESLAAGIIPD-LACYRTMLKGYM----------DHGYIEEGINLFEEVRESSES--DKFIMSAAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 949 ~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~ 1015 (1041)
|-++... .|| +.+-.++.-++. ++-..-+++.++.+..+.... --.+++.++.+|...|-.--|.
T Consensus 763 y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 763 YMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8887763 555 433333333332 344577888998887765554 5689999999999999999999
Q ss_pred HHHHHhhccCc
Q 001632 1016 DILDSMNSVRI 1026 (1041)
Q Consensus 1016 ~~~~~~~~~~~ 1026 (1041)
...++.++...
T Consensus 841 ~YYekvL~~~p 851 (895)
T KOG2076|consen 841 SYYEKVLEVSP 851 (895)
T ss_pred HHHHHHhCCCc
Confidence 99999988754
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=4.3e-15 Score=172.56 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG-----FSPNSFTYLSLVQAY 901 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~l~~~~ 901 (1041)
.+-++.+.|++.+++..++.+...|.+.....-....++|...+..++|+.+|+++.... .+++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344445555555555555555554432222233445555555555555555555554321 112222234455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-----------CCCh--h-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGI-----------PPSC--T-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 967 (1041)
...+++++|..+++.+.+..- .|+. . .+..++..+...|+..+|++.+++++.. -|-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 555555555555555554200 0111 1 2223444455555555555555555543 23355555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
...+...|...+|+..++.+....|.+..+....+.++...|+|++|..+++.+
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555444
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.2e-14 Score=166.68 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=168.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHH
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-----KPGLISYNIIINV 865 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~l~~~ 865 (1041)
+++.+..+.++..++++.|+.+...+.+....+-.++.++|...++.++|..+++++..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 45556778889999999999999888776677888999999999999999999999976421 1122334678999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDG-------------FSPNSFT-YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNH 931 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g-------------~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 931 (1041)
|...+++++|..+++++.+.. ..||-.. +..++..+.-.|+..+|++.++++.... |-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 999999999999999998731 1123333 3456677889999999999999999864 667788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+++++...|...+|++.++.++. ..| +..+...++..+.+.|++.+|..+.+.+.+..|.|+.+-
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999987776 455 566777888899999999999999999999999988543
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=4e-12 Score=133.70 Aligned_cols=621 Identities=10% Similarity=0.076 Sum_probs=416.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 001632 232 GNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTF 311 (1041)
Q Consensus 232 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (1041)
++..+|..+++...+.+ +-++..|-.-.+.=-..|++..|..+...--+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 46777888888877765 334445544444444555665555544333222 22333333222 2334455566666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 312 NEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAA 391 (1041)
Q Consensus 312 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (1041)
-..... -|+.+. ..+.+.--..+...-.+++++..+. .|+.. .|-.+.....+.+.|.-++.+..+. ++.
T Consensus 339 A~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHh-ccc
Confidence 655554 343332 1222222223333444556655553 34332 2233445556677788888888775 232
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELM----KSRNMWLSRFAYI 467 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~ 467 (1041)
... |.-+|.+..-++.|.++++...+. ++.+..+|.+-...--.+|+.+....++.+- ...|+..+...|-
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 333 334566677788888888888775 5567777877777777788888888777654 4467788888887
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL---PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCK 544 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 544 (1041)
.=...|-+.|..-.+..+...+...|. ....+|..-...|.+.+.++-|+.+|....+. ++-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 777778777888778888887777776 34567777778888888888888888887765 33455666666665566
Q ss_pred cCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHH
Q 001632 545 EGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKL 624 (1041)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 624 (1041)
.|..+.-..+|++.... .|
T Consensus 563 hgt~Esl~Allqkav~~--~p----------------------------------------------------------- 581 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ--CP----------------------------------------------------------- 581 (913)
T ss_pred cCcHHHHHHHHHHHHHh--CC-----------------------------------------------------------
Confidence 66666666666666554 11
Q ss_pred HhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHH
Q 001632 625 LLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMI 704 (1041)
Q Consensus 625 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 704 (1041)
..+..+.-....+-..|+...|+.++..+-...+.+..+|-+-+
T Consensus 582 ------------------------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 582 ------------------------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ------------------------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 11122222334444567888888888887766677888999888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChh
Q 001632 705 DAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLH 784 (1041)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 784 (1041)
........++.|..+|.+.... .|+...|.--+....-.++.++|..++++.++..+..+ ..|-.+.+
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlGQ--------- 693 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLGQ--------- 693 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHhH---------
Confidence 8888999999999999888775 46777777777777778889999999988887754322 12333333
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 001632 785 FAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN 864 (1041)
Q Consensus 785 ~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 864 (1041)
++.+.++++.|.+.|..-.+. .+..+-.|-.|...=.+.|.+-.|..+|++..-++.+ +...|...|+
T Consensus 694 ----------i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 694 ----------IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred ----------HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 234455677777777666654 2445567888888888899999999999999887543 6788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
+-.+.|+.+.|..+..+.++. ++.+...|.--|....+-++-.+....+++ +.-|+.+...++..|....++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999998888775 666777787777766666664444444333 45677888888999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 945 ATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
|.+.|++.++. .| ...+|..+..-+.++|.-+.-.+++.+.....|.....+..+..
T Consensus 836 ar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 836 AREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 99999999985 44 35567677778889998888888888877666665555544443
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.79 E-value=9.3e-14 Score=150.91 Aligned_cols=733 Identities=14% Similarity=0.063 Sum_probs=405.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 001632 204 QTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG 283 (1041)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (1041)
.++..+...|+.|+-+||..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888899999999999999999999999998 9999999988889999999999999888887765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHH----CCCC-CCHhh-------------HHHHHHHHHhcCChHHH
Q 001632 284 VAPTDFTYTLVISSFVKGSLLEE---ALKTFNEMKS----TGFA-PEEVT-------------YSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 284 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~~~~-p~~~~-------------~~~li~~~~~~g~~~~A 342 (1041)
.|...||..|..+|...||+.. .++.+..+.. .|+- |.... -.+.+......|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999765 2222222111 1211 11111 11223333444555555
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 343 LSLYKDMRSRG-LIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQ 421 (1041)
Q Consensus 343 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (1041)
++++..+.... ..|... .++-+.... ...++++.......-.++..+|..+++.-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554442211 011111 233322222 22333333333221147888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh----
Q 001632 422 LGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDA---- 497 (1041)
Q Consensus 422 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 497 (1041)
.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+.--+..+..+|....+. .+.+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~t 301 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFT 301 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhh
Confidence 8888777777776655 6777777778888888888888888877666666644422211 122222
Q ss_pred -hHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHH
Q 001632 498 -GSCNDMLNLYIKLDLT-----EKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQ 571 (1041)
Q Consensus 498 -~~~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 571 (1041)
..+..+.++....... .-....+....-.|+......|...+. ....|.-++..++...|..--...+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s----- 375 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDS----- 375 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccC-----
Confidence 2233333221111111 111111111111233333333332222 2225666666666655544311111
Q ss_pred HHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCccc--HHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHH
Q 001632 572 TFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDN--FSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRL 649 (1041)
Q Consensus 572 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 649 (1041)
...+.+.......|....+ ..+-.....+.+....++.....++....+. +..
T Consensus 376 ------------------------~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkn 430 (1088)
T KOG4318|consen 376 ------------------------GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKN 430 (1088)
T ss_pred ------------------------cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccc
Confidence 1111122222222211110 1111111111111111111111111111100 000
Q ss_pred HHH---------HHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChh
Q 001632 650 TFK---------FLMKLG------YILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAE 714 (1041)
Q Consensus 650 ~a~---------~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 714 (1041)
.+. ++.+.- ..+-..+...++..+....+..+++..-++..... -...|..|++.++...+.+
T Consensus 431 s~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle 508 (1088)
T KOG4318|consen 431 SFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLE 508 (1088)
T ss_pred hHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHH
Confidence 000 111110 11112244555566666666666665555544211 1267899999999999999
Q ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCChhHHHHHH
Q 001632 715 DVYLLYKEATAQ--GCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLD--TVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 715 ~A~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
.|..+..+.... .+..|..-+..+.+.+.+.+....+..+++++...-...+ ..+.-.+..+....|+.+.-..++
T Consensus 509 ~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 509 YALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 999999988653 2445666788899999999999999999998877432222 233444555666677777777766
Q ss_pred HHHH------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH---HcCC-
Q 001632 791 ERML------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK--AGKTHEASLLFSEMQ---EEGI- 852 (1041)
Q Consensus 791 ~~~~------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~---~~g~- 852 (1041)
+-.. +..+.++...|++.++..... ..|.+.....+...+-+ ...++++..+-..+. +.|-
T Consensus 589 d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~ 667 (1088)
T KOG4318|consen 589 DILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSC 667 (1088)
T ss_pred HHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccc
Confidence 6554 334556777777777766543 24555555444444432 233444433322221 1110
Q ss_pred --------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 853 --------KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP 924 (1041)
Q Consensus 853 --------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 924 (1041)
.|...+-+.- +.|...|...-.+.+.+.+.+.| ...-|+..|.+.|+++.|..++.++. +.|
T Consensus 668 ~~a~di~etpG~r~r~~R-Dr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k 737 (1088)
T KOG4318|consen 668 VDAGDITETPGVRCRNGR-DRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSK 737 (1088)
T ss_pred cchhhccccCcccccCCC-ccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCc
Confidence 0111100000 22333333333444444444432 22227888999999999999999988 678
Q ss_pred ChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCChHHHH
Q 001632 925 SCTHVNHLLSAFSKAG---LMAEATRVYNESLAAG--IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES-SESDKFIM 998 (1041)
Q Consensus 925 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 998 (1041)
+......|+..+.+.. +.-++...-++..+.. .+.+...|.--+....+-.+.+.|.+.|++..+. .+.+...+
T Consensus 738 ~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~l 817 (1088)
T KOG4318|consen 738 SPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADEL 817 (1088)
T ss_pred chHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHH
Confidence 8888889999887765 3444444444443321 1223333333233334556677899999997664 55677888
Q ss_pred HHHHHHHHhcC
Q 001632 999 SAAVHLYRYAG 1009 (1041)
Q Consensus 999 ~~l~~~~~~~g 1009 (1041)
..+.+++....
T Consensus 818 s~f~k~L~~nd 828 (1088)
T KOG4318|consen 818 SDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHhcC
Confidence 88888887654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.1e-14 Score=140.89 Aligned_cols=333 Identities=14% Similarity=0.129 Sum_probs=209.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChh-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 001632 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHK--KSYHR-KVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEE 306 (1041)
Q Consensus 230 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (1041)
.+|.+.++.-+|+.|+..|++.+...-..|....+- ..++- .-.+.|-.|.+.|-. +..+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccHHH
Confidence 345555555666666666655555554444443332 22221 112334444443321 11222 3344433
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 307 ALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEK 386 (1041)
Q Consensus 307 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 386 (1041)
-+|+.. +.+..+|.+||.++|+-...+.|.++|++......+.+..+||.+|.+-. +....+++.+|..
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHH
Confidence 223322 23456777777777777777777777777766666667777777776543 2223667777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----HhC
Q 001632 387 FKVAADEVIYGLLIRIYGKLGLYEDA----QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEK-ALDVIELM----KSR 457 (1041)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~----~~~ 457 (1041)
..+.||..|+|.++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++ ..+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 77777777777777777777766543 4555667777777777777777777777666543 33333333 222
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 458 NMWL----SRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL-----PD---AGSCNDMLNLYIKLDLTEKAKGFIAHIRK 525 (1041)
Q Consensus 458 ~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (1041)
.++| +...+...+..|.+..|.+-|.++..-+..... ++ ...|..+....+.....+....+|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 344566667777777777777776655443211 22 23466777888888889999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 001632 526 DQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCT 582 (1041)
Q Consensus 526 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 582 (1041)
.-.-|+..+...++++..-.|.++-.-+++.++...|..-+......++..+++...
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 777788888889999888889999888899998888877777777777777766553
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=4.1e-15 Score=148.53 Aligned_cols=491 Identities=13% Similarity=0.087 Sum_probs=315.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHcCC-C----ChhHHHHH
Q 001632 430 TYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY-IVMLQCYVMKEDLGSAEGTFQTLAKTGL-P----DAGSCNDM 503 (1041)
Q Consensus 430 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~~~~~l 503 (1041)
+...|.+-|.......+|+..++-+.+...-|+.-.+ ..+...+.+..++..|++.|+..+..-+ . .+...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344556666667777888888877776666665433 2345567788888889998888877655 2 34456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCC
Q 001632 504 LNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTE 583 (1041)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 583 (1041)
...+.+.|+++.|...|+...+. .|+..+-..|+-+++.-|+-+.-.+.|.+|......||..-|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky------------- 347 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY------------- 347 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------------
Confidence 67788999999999999998875 578777666777777789999999999999887555553221
Q ss_pred cccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHH-------HHH
Q 001632 584 NAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKF-------LMK 656 (1041)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-------~~~ 656 (1041)
+...++.+....... .-+..+...-+..+. .|.. ++.
T Consensus 348 -------i~~~ddp~~~ll~ea----------------------------i~nd~lk~~ek~~ka-~aek~i~ta~kiia 391 (840)
T KOG2003|consen 348 -------IKEKDDPDDNLLNEA----------------------------IKNDHLKNMEKENKA-DAEKAIITAAKIIA 391 (840)
T ss_pred -------cCCcCCcchHHHHHH----------------------------HhhHHHHHHHHhhhh-hHHHHHHHHHHHhc
Confidence 111111111000000 000001111111110 1111 111
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001632 657 LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAIS 736 (1041)
Q Consensus 657 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 736 (1041)
.-+.|+-.. +| +-..+.+..-. ..+.-...-..-...|.++|+++.|+++++-...+.-+.....-+
T Consensus 392 pvi~~~fa~------g~------dwcle~lk~s~-~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~ 458 (840)
T KOG2003|consen 392 PVIAPDFAA------GC------DWCLESLKASQ-HAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAAN 458 (840)
T ss_pred cccccchhc------cc------HHHHHHHHHhh-hhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhh
Confidence 112221110 00 11111111100 000011111122345778889999988888777653222222222
Q ss_pred HHHHH--HHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 737 ILVNT--LTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARS 814 (1041)
Q Consensus 737 ~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 814 (1041)
.|-.. +....++..|.++....+.. --||.. ++...|+ .....|++++|.+.|++.+.
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~------dryn~~--a~~nkgn------------~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNI------DRYNAA--ALTNKGN------------IAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhcc------cccCHH--HhhcCCc------------eeeecCcHHHHHHHHHHHHc
Confidence 22111 11223455555554433221 112211 1222232 23467899999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001632 815 LGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY 894 (1041)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 894 (1041)
.+..-....||.=+ .+.+.|++++|+..|-++... +.-+......+.+.|....+...|++++-+.... ++.|....
T Consensus 519 ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 65545555565433 467789999999999888653 2235667778899999999999999999887665 77788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM-D 973 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~ 973 (1041)
..|...|-+.|+-..|.+.+=.--+. +|-+..+...|...|....-+++|+.+|++..- +.|+..-|..|+..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999887666554 577888999999999999999999999999754 7999999999998765 6
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
.|++.+|..+|..+..+.|.|...+-.|+.+....|-
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999999999999988888888776663
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=9.5e-14 Score=138.30 Aligned_cols=346 Identities=14% Similarity=0.119 Sum_probs=260.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 215 EPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 215 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
+.+..+|..||.++|+--..+.|.++|++-.+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 44678999999999999999999999999999888999999999998755332 38899999999999999999999
Q ss_pred HHHHHcCCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHh----CCCCC----CHHHH
Q 001632 295 ISSFVKGSLLEE----ALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDE-ALSLYKDMRS----RGLIP----SNYTC 361 (1041)
Q Consensus 295 i~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~p----~~~~~ 361 (1041)
+++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ |..++.++.. +..+| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 56778889999999999999999999998887644 4444444432 22333 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 362 ASLLSLYYKNENYSKALSLFSEMEKFK----VAADE---VIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAM 434 (1041)
Q Consensus 362 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 434 (1041)
..-+..|.+..|.+.|.++........ +.|+. .-|..+....|+...++.....|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788889999999999999887765421 22332 34666778888889999999999999987777888888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C--------HhH-----HHHHHHHHHHc------CC
Q 001632 435 AQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKE-D--------LGS-----AEGTFQTLAKT------GL 494 (1041)
Q Consensus 435 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~--------~~~-----a~~~~~~~~~~------~~ 494 (1041)
+++.--.+.++-.-+++..++.-|...+.....-++..+++.. . +.. |..+++..... ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999889999999999988888775555554444555555443 1 100 11111111111 11
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 001632 495 PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQV-D---FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSL 564 (1041)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 564 (1041)
......++.+-.+.+.|..++|++++..+.+.+. . |......-+++...+.+....|..+++-|...+..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3556678888888999999999999999965542 2 33333445667777888899999999988776543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4.3e-14 Score=141.37 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFN-FMLSSLHKKSYHRKVIDLWRQMMDKGVAPT----DFTY 291 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~ 291 (1041)
+-.....|.+-|..+....+|+..|+-+.+....|+..... .+.+.+.+...+.+|++.|+-.++.-...+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33445566667777788889999998888777777665443 344667788889999999987776421111 3456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 001632 292 TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLI 355 (1041)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 355 (1041)
+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|..-...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 77777788999999999999998877 688887667777777788999999999998765433
No 37
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.71 E-value=3.1e-11 Score=128.08 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHH-HH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLK-GYMDHGYIEEGINLFEEVRE-SSESDKFIMSAAVH-LY 1005 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~-~~ 1005 (1041)
....++.+..+|+|++|++...+ ++.+|-..-|-++-. .+.+.|+...|+.++++--. ..|.|..+|-.+.. .+
T Consensus 1295 viaaidl~ien~qwdk~idtak~---qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~l 1371 (1636)
T KOG3616|consen 1295 VIAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDML 1371 (1636)
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHh
Confidence 44567888999999999876543 456665555555443 45678999999999988432 35556666665543 44
Q ss_pred HhcC-ChhHHHHHHHHhhccCccch
Q 001632 1006 RYAG-KEHEANDILDSMNSVRIPFM 1029 (1041)
Q Consensus 1006 ~~~g-~~~eA~~~~~~~~~~~~~~~ 1029 (1041)
.+-| +..||-.-+..+++.-.-..
T Consensus 1372 akpgt~~~eay~e~a~lrdv~~dl~ 1396 (1636)
T KOG3616|consen 1372 AKPGTNCAEAYHEIADLRDVHFDLC 1396 (1636)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5544 67777666666655444333
No 38
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.2e-09 Score=120.47 Aligned_cols=228 Identities=12% Similarity=0.142 Sum_probs=130.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 176 QLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAV 255 (1041)
Q Consensus 176 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 255 (1041)
+.|+.|+. -.+++.+.+ -.++.+.++...|.... +...-++.+.+.+...+....+..++-...... .|+...
T Consensus 506 KvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~ 578 (1666)
T KOG0985|consen 506 KVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGH 578 (1666)
T ss_pred HcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-Chhhhh
Confidence 33677774 345565555 56778877777776532 233345666666666666666666666655443 333332
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhH----HHHH
Q 001632 256 FNF-MLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTY----SQLI 330 (1041)
Q Consensus 256 ~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li 330 (1041)
..+ ++..- .. .|-++.+..+.++. -+.+-+..+.+.|.++|-+..|++.+..+.+. .-..+.- --.+
T Consensus 579 LQTrLLE~N-L~----~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 579 LQTRLLEMN-LV----HAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL 650 (1666)
T ss_pred HHHHHHHHH-hc----cchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH
Confidence 221 11111 11 12222233333322 12223677888888899999998888776543 1111110 1123
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHH
Q 001632 331 SLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF-----------KVAADEVIYGLL 399 (1041)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 399 (1041)
-.|...-.++++.+.++.|...++.-+..+...+..-|...=-.+...++|+....- ++.-|..+.-.-
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 455566678888888888888777777666666665555544445555555554321 134455566667
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 001632 400 IRIYGKLGLYEDAQKTFAE 418 (1041)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~ 418 (1041)
|.+-|+.|++.+.+++.++
T Consensus 731 IqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHhhccHHHHHHHHhc
Confidence 8888888888887777543
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.5e-11 Score=125.25 Aligned_cols=220 Identities=16% Similarity=0.142 Sum_probs=174.3
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
+.-.|+...|.+-|+.+++....++ ..|--+...|+...+.++-.+.|++..+.+.. |+.+|..=...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3456788888888888888764333 33666777899999999999999999886432 556777777778888899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 876 EKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 876 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.=|++.+.. -+-+.+.|..+.-+..+.++++++...|++.+++ +|..+.+|+..+.++..++++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999999874 2445677888888888999999999999999987 566677999999999999999999999999887
Q ss_pred CCCCC-------HH--HHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 956 GIIPD-------LA--CYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 956 ~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.|+ .. +...++-. .=.+++..|++++.++.+..|..-.++..|+.+-..+|+.++|.++|++..
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444 11 11111111 124899999999999999999888999999999999999999999998754
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.5e-15 Score=157.71 Aligned_cols=219 Identities=18% Similarity=0.216 Sum_probs=118.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKL 878 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 878 (1041)
.++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++++..++ .++...+..++..+.+.++++++..+
T Consensus 57 ~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHH
Confidence 345555666666665544 2355567777776 6889999999999887765 35666778888899999999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 879 IQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 879 ~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
++++.... .+.+...|..+...+.+.|+.++|++.+++.++.. |.|....+.++..+...|+.+++.++++...+. .
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~ 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C
Confidence 99987642 35677788889999999999999999999999964 445778889999999999999999999998875 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+.|+..+..+..+|...|+.++|+.+++++....|.|+.++..+++++...|+.++|.++.++...
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 567778889999999999999999999999999999999999999999999999999999988643
No 41
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.2e-08 Score=112.86 Aligned_cols=784 Identities=13% Similarity=0.123 Sum_probs=410.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLH 264 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 264 (1041)
.|-.-...+...|++++|-++-..-++ |+-.+..|.+.+=..=+..|...=.+.+|..+...| +.|..----+++--.
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL 439 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVL 439 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 344445566678999999888776654 566777777777666667778777888888888888 555544444555556
Q ss_pred hcCChhHHHHHHHHHh-----hCC--CCCC-----HHHH------HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhH
Q 001632 265 KKSYHRKVIDLWRQMM-----DKG--VAPT-----DFTY------TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTY 326 (1041)
Q Consensus 265 ~~g~~~~a~~~~~~m~-----~~~--~~~~-----~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 326 (1041)
.+|+.+...+|+.+=+ +.| +.|- ..+| +.++..|+..|+++.+.-.. .+.|..|| |
T Consensus 440 ~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---y 513 (1666)
T KOG0985|consen 440 QQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYA---KKVGYTPD---Y 513 (1666)
T ss_pred hhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHH---HHcCCCcc---H
Confidence 6777777777765521 122 1121 1222 33455555556655544332 34577777 4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 001632 327 SQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIY-GLLIRIYGK 405 (1041)
Q Consensus 327 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 405 (1041)
-.+++.+.+ -..|.+.++...|.+... ...-++.+...+...+....+..++-.+.+.. .|+.... ..++..-.
T Consensus 514 mflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL- 588 (1666)
T KOG0985|consen 514 MFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL- 588 (1666)
T ss_pred HHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh-
Confidence 445666555 678888888888776432 23345666666666666677777666665543 3343322 22222211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHhHH
Q 001632 406 LGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRN--M-WLSRFAYIVMLQCYVMKEDLGSA 482 (1041)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~a 482 (1041)
.+-.+-| +.+.-.+.... .-+-.+.+.|-+.|-+..|++.+.++.+-. + ..+...- --+-.|...-..+.+
T Consensus 589 ~~aPqVA----DAILgN~mFtH-yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~p-EwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 589 VHAPQVA----DAILGNDMFTH-YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNP-EWLVNYFGSLSVEDS 662 (1666)
T ss_pred ccchHHH----HHHHhcccccc-ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCH-HHHHHHHHhcCHHHH
Confidence 1112222 22222222111 114556666777777777776666553310 0 0000000 011233344456677
Q ss_pred HHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCChhh
Q 001632 483 EGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD-----------QVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 483 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
.++++.|...+. .+..+.-.+..-|..+=..+...++|+..... ++.-|+...-..|.+.|+.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 777777777666 56665555555555544445555555544321 344566666778889999999888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccc---hhhh-hhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGD---KFVA-SNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
..++.++ .++--...+-+.+-.+-.....+...+-. +.+. ....--......+..|...-++.+.-.+.-.++
T Consensus 743 vERicre---sn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LL 819 (1666)
T KOG0985|consen 743 VERICRE---SNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALL 819 (1666)
T ss_pred HHHHHhc---cccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhh
Confidence 7776553 11111111111111110000000000000 0000 000001111222333444434444444444444
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHH-----------------HHHcCCCCCHHHHHHHHHHHhccCCHHHH-H---HH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKF-----------------LMKLGYILDDEVTASLIGSYGKHQKLKEA-Q---DV 685 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~---~~ 685 (1041)
+..-+......+|......-..++-.. .+..| ..|+.+++++.+.|...++-.+- . ..
T Consensus 820 D~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~y 898 (1666)
T KOG0985|consen 820 DVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPY 898 (1666)
T ss_pred cCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCc
Confidence 443344444444433322222222111 22333 45788999999998765542221 0 01
Q ss_pred HHH------hhcC-----------CCCC---------hHHHHHHHHHHHhcCChhHHH-----------HHHHHHHHcCC
Q 001632 686 FKA------ATVS-----------CKPG---------KLVLRSMIDAYAKCGKAEDVY-----------LLYKEATAQGC 728 (1041)
Q Consensus 686 ~~~------~~~~-----------~~~~---------~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~g~ 728 (1041)
++. ..+. ..-| -..|....+-+.+..+.+--. .+.++.++-++
T Consensus 899 YDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal 978 (1666)
T KOG0985|consen 899 YDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTAL 978 (1666)
T ss_pred chhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcC
Confidence 111 0000 0001 122333444444444433222 23333333322
Q ss_pred C--CCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCC--CChhhHHHHH---------------------------HHH
Q 001632 729 A--LDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLD--LDTVAYNTCI---------------------------KAM 777 (1041)
Q Consensus 729 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li---------------------------~~~ 777 (1041)
. .|+...+..+.++...+-+.+-+++++++.-.+.. -+...-|.+| ...
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~ia 1058 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIA 1058 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHH
Confidence 1 24555667788888888888988888887654421 1111222222 223
Q ss_pred HhcCChhHHHHHHHHHH--------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 778 LGAGKLHFAASIYERML--------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
..++-+++|..+|++.. ....-+++++|.+.-++.- .+.+|..+..+-.+.|.+.+|++-|-+.
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 33455566666665533 2223455666665554432 3567888888888888888887766443
Q ss_pred cCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH
Q 001632 850 EGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHV 929 (1041)
Q Consensus 850 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 929 (1041)
-|+..|.-.++...+.|.+++-++.+....+..-+|...+ .|+-+|++.++..+-++++. -|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence 2566788888888888888888888887777655565544 46677888888766554432 3666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------------------
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE-------------------- 989 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------- 989 (1041)
..+++-|...|.++.|.-+|... ..|.-|...+...|++..|+.-..++..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 66676666666666665555432 1233333333344444444433333211
Q ss_pred -----ccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 990 -----SSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 990 -----~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
.....+.-+..++..|...|-++|-..+++.-
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 11223445666777888888888877776653
No 42
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.60 E-value=2.4e-08 Score=106.72 Aligned_cols=527 Identities=15% Similarity=0.117 Sum_probs=287.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001632 400 IRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479 (1041)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 479 (1041)
...+...|+++.|...|-+... ....+.+.....++.+|+.+++.+.++.. ..--|..+.+.|...|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445567777777776644321 22345666778899999999998877643 334577888999999999
Q ss_pred hHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 001632 480 GSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMG 559 (1041)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 559 (1041)
+.|+++|.+ ...++.-+.+|.+.|+++.|.++-.+.. |.+.....|.+-..-+-+.|++.+|.+++-.+.
T Consensus 782 e~ae~lf~e--------~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 782 EIAEELFTE--------ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHHh--------cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 999999864 3457778899999999999988876653 344455667666677778888888887765432
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHH
Q 001632 560 KNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLI 639 (1041)
Q Consensus 560 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li 639 (1041)
.. + ..+.+|-+.|..|..+.+.++-... .-...+..+.
T Consensus 852 ~p----~-------------------------------------~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~ 889 (1636)
T KOG3616|consen 852 EP----D-------------------------------------KAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFA 889 (1636)
T ss_pred Cc----h-------------------------------------HHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHH
Confidence 21 1 1234455556666665555443211 1122455666
Q ss_pred HHHHHcCCHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhc-------------CCCCC--hHHH---
Q 001632 640 CKFIRDGMRLTFKF-LMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV-------------SCKPG--KLVL--- 700 (1041)
Q Consensus 640 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~--~~~~--- 700 (1041)
..+-..|++..|.+ .++.| -+.+-+.+|...+-+++|..+-..--. +...+ +...
T Consensus 890 ~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 67777787777776 33333 344555666666666666665433110 00000 0111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH-----
Q 001632 701 ---RSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT----- 772 (1041)
Q Consensus 701 ---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 772 (1041)
..-++.-+..+.++-|.++-+-..+.. .+.. -..+..-+...|++++|.+-+-+.++.+.- ..+|..
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaiklnty--nitwcqavpsr 1038 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTY--NITWCQAVPSR 1038 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhcccc--cchhhhcccch
Confidence 112222333344444444433333221 1111 112333456778888887777766654311 011111
Q ss_pred --------------HHHHHHhcCChhHHHHHHHHHH-------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 773 --------------CIKAMLGAGKLHFAASIYERML-------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 773 --------------li~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
.+..+.+.++|..|..+-+.-. .....|++.+|..++-+.. .|+.
T Consensus 1039 fd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i---- 1110 (1636)
T KOG3616|consen 1039 FDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI---- 1110 (1636)
T ss_pred hhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch----
Confidence 1122333344444433332210 1112233444433332222 2332
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----------------HHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 001632 826 NLVSFYGKAGKTHEASLLFSE----------------MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSP 889 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~----------------m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 889 (1041)
.++.|..++.|.+|+++.+. ..++|.+ .+..+..-..-+.+.|++.+|+..+-++.+.....
T Consensus 1111 -~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~n 1188 (1636)
T KOG3616|consen 1111 -ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDN 1188 (1636)
T ss_pred -HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCc
Confidence 45566777777777766432 1222432 45667777777888899988888776653321111
Q ss_pred C---------------------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 890 N---------------------S--FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 890 ~---------------------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
| . ......+.++...|..+.|-+++-..- .....++++|+...|.+|.
T Consensus 1189 d~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~---------~~keaida~~~~eewakak 1259 (1636)
T KOG3616|consen 1189 DALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAK 1259 (1636)
T ss_pred HHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHH
Confidence 1 1 111122222233333333333322111 1133467888888888887
Q ss_pred HHHHHH---------------HHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHH-HHHHHHh
Q 001632 947 RVYNES---------------LAAGIIPDL---ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA-AVHLYRY 1007 (1041)
Q Consensus 947 ~~~~~~---------------~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 1007 (1041)
++.+++ ++..-+.+. +-..+.+..+...|++++|+.-..+ +...|-..-|.. .+..+.+
T Consensus 1260 qvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~--qnykpil~kyva~yaa~li~ 1337 (1636)
T KOG3616|consen 1260 QVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKK--QNYKPILDKYVALYAAHLIH 1337 (1636)
T ss_pred HHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHh--cccHHHHHHHHHHHHHHHHh
Confidence 776654 221111111 1123446778899999999877654 223332223332 2445778
Q ss_pred cCChhHHHHHHHHh
Q 001632 1008 AGKEHEANDILDSM 1021 (1041)
Q Consensus 1008 ~g~~~eA~~~~~~~ 1021 (1041)
.|+..+|+.++.+-
T Consensus 1338 ~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1338 EGDLAQALALLEQH 1351 (1636)
T ss_pred cCcHHHHHHHHHHh
Confidence 99999999988764
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.4e-09 Score=107.89 Aligned_cols=163 Identities=11% Similarity=0.091 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 001632 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTA-VFNF 258 (1041)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ 258 (1041)
+.+...|-....-=..++++..|+.+|+..+..+ ..+...|..-+..=.++..+..|..+++..... .|.+. .|--
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHH
Confidence 3455556555555556677788888888887654 345566666666666667777777777665543 22221 1111
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 001632 259 MLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGK 338 (1041)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 338 (1041)
.+..=-..|++..|.++|+.-.+ ..|+...|.+.|+.=.+...++.|..++++..-. .|++.+|--....--++|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 12222223444444444444433 2344444444444444444444444444444332 3444444444444444444
Q ss_pred hHHHHHHHHHH
Q 001632 339 SDEALSLYKDM 349 (1041)
Q Consensus 339 ~~~A~~~~~~m 349 (1041)
...|..+|+..
T Consensus 223 ~~~aR~VyerA 233 (677)
T KOG1915|consen 223 VALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=5.7e-09 Score=106.27 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.8
Q ss_pred cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 691 VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 691 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
...|.|-.+|--.++.-...|+.+...++|++.+.+
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 344667777777777777778888888888887765
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=6.3e-13 Score=141.37 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=173.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS-FTYL 895 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~ 895 (1041)
+..+.+|.++.++|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+. +.|+. ..|.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHH
Confidence 567889999999999999999999999999986 55 567888888888888999999999998875 33433 3466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
-|+..|.+.++++.|+-.|+++++-+ |-+.+...+++..+.+.|+.|+|+++++++.... +-|+.+---.+..+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhc
Confidence 67888999999999999999999954 4456677888999999999999999999998752 336666666677888999
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
++++|+..++++.+..|.++.++..++.+|.+.|+.+.|+.-+.-+.+..-
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999999999999999999999999999999999988887766443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.3e-10 Score=118.02 Aligned_cols=290 Identities=12% Similarity=0.111 Sum_probs=194.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCC--CCChhhHHHHHHHHHhcCCh
Q 001632 706 AYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNL--DLDTVAYNTCIKAMLGAGKL 783 (1041)
Q Consensus 706 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 783 (1041)
++-...+.++++.-.....+.|+......-+....+.-...++|+|+.+|+++.+..+ --|.-+|..++-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv------- 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV------- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-------
Confidence 3444445555555555555555443333333333344455566666666666665543 1233344333322
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHH
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNII 862 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 862 (1041)
+..+-.-+ -+-..+.+-+ +--+.|...+.+.|+-.++.++|...|++.++. .|. ...|+.|
T Consensus 309 --------------~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLm 370 (559)
T KOG1155|consen 309 --------------KNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLM 370 (559)
T ss_pred --------------HhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHh
Confidence 11111100 0001111110 123346667788888888999999999999886 344 3667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
..-|...++...|++-++..++- .+-|-..|-.|+++|.-.+...=|+-.|++..+.. |-|...|..|+.+|.+.++.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccH
Confidence 88899999999999999998885 46678889999999999999999999999999863 55677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cCChHHHHHHHHHHHHhcCChhHHH
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES-------SESDKFIMSAAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~eA~ 1015 (1041)
++|++-|......| ..+...+..|...|-+.++.++|..+|++..+. .+....+..-|+..+.+.+++++|.
T Consensus 449 ~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 449 EEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999988764 335677888889999999999999999986652 2223445555777788888888888
Q ss_pred HHHHHhhc
Q 001632 1016 DILDSMNS 1023 (1041)
Q Consensus 1016 ~~~~~~~~ 1023 (1041)
........
T Consensus 528 ~Ya~~~~~ 535 (559)
T KOG1155|consen 528 YYATLVLK 535 (559)
T ss_pred HHHHHHhc
Confidence 76665544
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=7.1e-08 Score=102.34 Aligned_cols=575 Identities=14% Similarity=0.124 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 001632 254 AVFNFMLSSLHKKSYHRKVIDLWRQMMDK-GVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISL 332 (1041)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 332 (1041)
..|-..+..+.++|++......|+..+.. -+.-....|...+......|-.+.+.+++++.++. .| ..-..-|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 35666677777888888888888776543 23334457888888888888888999999888865 33 336667788
Q ss_pred HHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 001632 333 SIKHGKSDEALSLYKDMRSRG------LIPSNYTCASLLSLYYKNENYS---KALSLFSEMEKFKVAAD--EVIYGLLIR 401 (1041)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~ 401 (1041)
++..+++++|.+.+......+ .+-+...|..+-+...++.+.- ....++..+... -+| ...|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888899999988888875432 1223344444444444433321 123333333332 122 235666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 001632 402 IYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGS 481 (1041)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 481 (1041)
.|.+.|+++.|..+|++....-. ...-|..+.+.|....+..-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 67777777777777666554311 2223333444443322111111100 0000000000 0001111
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 482 AEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 482 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
....|+.+....+ .+++ ...-..-+-++..|..-+ -+..|+..+-...+.+....
T Consensus 322 ~~a~~e~lm~rr~-------~~lN----------------sVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~ 376 (835)
T KOG2047|consen 322 HMARFESLMNRRP-------LLLN----------------SVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT 376 (835)
T ss_pred HHHHHHHHHhccc-------hHHH----------------HHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc
Confidence 2222222222111 0000 000000112233333222 22334455555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 001632 562 GSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICK 641 (1041)
Q Consensus 562 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~ 641 (1041)
+.|..
T Consensus 377 -vdP~k-------------------------------------------------------------------------- 381 (835)
T KOG2047|consen 377 -VDPKK-------------------------------------------------------------------------- 381 (835)
T ss_pred -cCccc--------------------------------------------------------------------------
Confidence 11110
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCC----hHHHHHHHHHHHhcCChhHHH
Q 001632 642 FIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPG----KLVLRSMIDAYAKCGKAEDVY 717 (1041)
Q Consensus 642 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 717 (1041)
....-...+..+.+.|-..|+++.|+.+|++.....-+. ..+|.....+-.++.+++.|+
T Consensus 382 ----------------a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 382 ----------------AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred ----------------CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 000011234555666667777777777777744221111 245666666666677777777
Q ss_pred HHHHHHHHcCCC-----------------CCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001632 718 LLYKEATAQGCA-----------------LDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGA 780 (1041)
Q Consensus 718 ~~~~~~~~~g~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 780 (1041)
.+.++....--. .....|...++..-..|-++....+++.+++..+.......|-.+
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm------ 519 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM------ 519 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH------
Confidence 777766542100 011233333444344444455555555544443322111111110
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCc
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEK-AYMNLVSFYGKA---GKTHEASLLFSEMQEEGIKPGL 856 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~ 856 (1041)
-.....-++++.++|++-+..--.|+.. .|+..+.-+.+. -+++.|..+|++.++ |..|..
T Consensus 520 --------------fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 520 --------------FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred --------------HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 1123445667777776666554445554 788877777653 468999999999998 665544
Q ss_pred cc--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH---H
Q 001632 857 IS--YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS--FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH---V 929 (1041)
Q Consensus 857 ~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~ 929 (1041)
.- |......-.+.|....|+.++++.... +++.. ..|+..|.--...=-+.....+|++.++. -|+... .
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 22 222233334678889999999997664 44432 34666664333332334557788888874 354433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLACYRTMLKGYMDHGYIEEGINLFEEVRESS 991 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 991 (1041)
--..++=++.|.++.|..+|.-.-+- ++| +...|.+.=.--.++|+-+--.+++ +++...
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML-RikRsv 723 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML-RIKRSV 723 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHH
Confidence 33455667889999999999887664 455 5667777766667899833333333 344433
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=2.2e-11 Score=133.70 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=155.0
Q ss_pred hccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHHHHHHc
Q 001632 797 GRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI-------SYNIIINVYAAA 869 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~~~~ 869 (1041)
...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|.+++..+.+.+..++.. .|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666654 5567778888888888889999988888888875432221 222233333344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVY 949 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 949 (1041)
.+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....|+.+++++.+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 4556666666666443 4567777888888889999999999999888873 4555322 233334558889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 950 NESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 950 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++++. .+-|+..+.++.+.|.+.|++++|...|+++.+..| +...+..++.++.+.|+.++|.+++++-.
T Consensus 318 e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 318 RQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998875 444666778888889999999999999999887544 44556678999999999999988888653
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=2.5e-11 Score=134.20 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=185.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAV-AISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
.|+++.|.+.+.+..+.. |+.. .+-....+....|+++.|..++.+..+..+.+..........
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~------------- 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR------------- 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH-------------
Confidence 455555555555544432 2222 222223344455555555555555544433322212111222
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHH----HHHH
Q 001632 789 IYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYN----IIIN 864 (1041)
Q Consensus 789 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~l~~ 864 (1041)
++...|+++.|.+.++.+.+.. |.+..++..+...|.+.|++++|.+++..+.+.+.. +...+. ....
T Consensus 162 ------l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 162 ------ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEI 233 (409)
T ss_pred ------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 2334556666666666666664 556778888999999999999999999999987643 222221 1112
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH---HHHHHHHHHh
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDG---FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH---VNHLLSAFSK 938 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 938 (1041)
++...+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++..+.. |+... ..........
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcC
Confidence 2233334444445555555531 12377888889999999999999999999999863 44432 1222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH--HHhccCChHHHHHHHHHHHHhcCChhHH
Q 001632 939 AGLMAEATRVYNESLAAGIIPDL--ACYRTMLKGYMDHGYIEEGINLFEE--VRESSESDKFIMSAAVHLYRYAGKEHEA 1014 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~eA 1014 (1041)
.++.+++++.+++.++. .+-|+ ....++.+.+.+.|++++|.++|++ ..+. .|++.++.+++.++.+.|+.++|
T Consensus 312 ~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 57889999999998874 33356 6778999999999999999999995 4443 55666777999999999999999
Q ss_pred HHHHHHhhc
Q 001632 1015 NDILDSMNS 1023 (1041)
Q Consensus 1015 ~~~~~~~~~ 1023 (1041)
.+++++-..
T Consensus 390 ~~~~~~~l~ 398 (409)
T TIGR00540 390 AAMRQDSLG 398 (409)
T ss_pred HHHHHHHHH
Confidence 999998544
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=2.8e-08 Score=108.10 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=183.7
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhc
Q 001632 680 KEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSF 759 (1041)
Q Consensus 680 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 759 (1041)
.++.+.+++.....+.|......+.--|+..++.+.|.+..++...-+..-+...|..+.-.+...+++.+|+.+++...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45566666655444555555555566677788888888888888887666677788888778888888888888887766
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 760 QDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHE 839 (1041)
Q Consensus 760 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 839 (1041)
..-...-.... .-+.--...++.+.|......++ .+|+.... ....++-..
T Consensus 541 ~E~~~N~~l~~-~~~~i~~~~~~~e~~l~t~~~~L------------~~we~~~~----------------~q~~~~~g~ 591 (799)
T KOG4162|consen 541 EEFGDNHVLMD-GKIHIELTFNDREEALDTCIHKL------------ALWEAEYG----------------VQQTLDEGK 591 (799)
T ss_pred HHhhhhhhhch-hhhhhhhhcccHHHHHHHHHHHH------------HHHHhhhh----------------Hhhhhhhhh
Confidence 54322110000 00111112344444444444433 11110000 000011111
Q ss_pred HHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHhcCCHHHH
Q 001632 840 ASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGF--SPN------SFTYLSLVQAYTEAAKYSEA 910 (1041)
Q Consensus 840 A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~------~~~~~~l~~~~~~~g~~~~A 910 (1041)
.++....+.-. +-.-+.+.-..-+..... -+...+.--.. +..... .|+ ...|......+.+.+..++|
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 12222211110 000011111111111111 00000000000 111111 112 23344556677888888999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHH
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGIN--LFEEV 987 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~ 987 (1041)
..-+.+..... +-....|...+..+...|++++|.+.|...+. +.|+ +.+..++...+.+.|+-.-|.. ++..+
T Consensus 670 ~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 670 RSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred HHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 88888877742 45556788888899999999999999999887 5664 6688889999999998877777 99999
Q ss_pred HhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 988 RESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 988 ~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+..|.++.+++.++.++.+.|+.++|.+.++...+
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=5.9e-08 Score=102.93 Aligned_cols=540 Identities=13% Similarity=0.111 Sum_probs=298.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGL--PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYC 543 (1041)
Q Consensus 466 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 543 (1041)
+..-++....++++..-...|+..+..-+ .....|...+......+-.+.+..+|++..+. ++..-+-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 44444455555566666666655554443 34455555555555666666666666665543 3334555556666
Q ss_pred hcCChhhHHHHHHHHhhCC------CCCCHHHHHHHHHHHhccCCCcc--cccchhhh----hhhhhhhHHHHhhhhccC
Q 001632 544 KEGMVTDAEQFVEEMGKNG------SLKDSKFIQTFCKILHGGCTENA--EFGDKFVA----SNQLDLMALGLMLSLYLT 611 (1041)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 611 (1041)
+.+++++|.+.+...+... .+.+...+..+...+.+..+... +++..+.. ..+.--..|+.++..|..
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 6666666666666555432 12222333333333332221110 11222222 223334678889999999
Q ss_pred cccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001632 612 DDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLM----KLGYILDDEVTASLIGSYGKHQKLKEAQDVFK 687 (1041)
Q Consensus 612 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 687 (1041)
.|.+++|..+++..+..-.+..-+.++.+.|.+-.....+..|. +.+-..+...+..-+..+...- +.--.+.+
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm--~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM--NRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH--hccchHHH
Confidence 99999999999999998888888888888887766555555443 1111111111111111110000 00000111
Q ss_pred H-hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHhcc
Q 001632 688 A-ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD------AVAISILVNTLTNHGKHEQAEIIIHNSFQ 760 (1041)
Q Consensus 688 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 760 (1041)
. +....+.++..|..-+..+ .|+..+-...|.+++.. +.|. ...|..+...|...|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1 2234466677776655543 56777888888888765 3332 23677788888899999999999998887
Q ss_pred CCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcC
Q 001632 761 DNLDLD---TVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTAR--SLGLSLDEKAYMNLVSFYGKAG 835 (1041)
Q Consensus 761 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g 835 (1041)
-..+-- ..+|......-.+..+++.|.++.++....-+.. . ++.|+... +..+..+..+|..+++.....|
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~--~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP--E--LEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch--h--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765433 4567777777777788888888877765111110 0 11121110 0001124556777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---cCCHHHHH
Q 001632 836 KTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSF-TYLSLVQAYTE---AAKYSEAE 911 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~---~g~~~~A~ 911 (1041)
-++....+++++++..+- .+.........+..+..++++.+.|++-+..=-.|+.+ .|++.+..+.+ ..+.+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 788888888888775442 22222223334455666777777777655531123332 35555544432 23678888
Q ss_pred HHHHHHHHCCCCCChhHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH-HhcCChHHHHHHHHH
Q 001632 912 ETINSMQKQGIPPSCTHVNHLL--SAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGY-MDHGYIEEGINLFEE 986 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~ 986 (1041)
.+|++.++ |+||...-+-.|+ ..=-+.|....|+.+|+++-.. .++. ...|+..+.-- .-.| +..-..+|++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 88888887 5666544332222 2223457778888888886542 4332 22344433211 1112 2334566777
Q ss_pred HHhccCChH--HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 987 VRESSESDK--FIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 987 ~~~~~~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.+|.+- ......+++=++.|..+.|..++.--.
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 766655543 233445566667777777777765543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.2e-13 Score=145.04 Aligned_cols=187 Identities=16% Similarity=0.155 Sum_probs=112.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEG-IKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++++|.+++....+. .++...+..++..+...++++++..++++..... ..++...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554443 2455667778888999999999999999987642 34566778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
.+++..+. .+.|......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|+.++++..+. .
T Consensus 168 ~~~~al~~-~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 168 DYRKALEL-DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 99999885 34457778889999999999999999998888753 566778889999999999999999999998874 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+.|+.....++.++...|+.++|..+..++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 447888888899999999999999999887653
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-09 Score=111.58 Aligned_cols=56 Identities=16% Similarity=0.390 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 364 LLSLYYKNENYSKALSLFSEMEKFKVAAD-EVIYGLLIRIYGKLGLYEDAQKTFAETEQ 421 (1041)
Q Consensus 364 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (1041)
..+-|.++|++++|++++.+.++. .|| .+-|.....+|...|+|+...+--.+..+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334456666677777777666664 344 55566666666666666666555554444
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.5e-09 Score=106.39 Aligned_cols=314 Identities=14% Similarity=0.094 Sum_probs=224.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc
Q 001632 669 LIGSYGKHQKLKEAQDVFKAAT-VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA--LDAVAISILVNTLTNH 745 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~ 745 (1041)
+..++-...+.+++..-.+... .+++.+..+-+....+.....++++|..+|+++.++.+- -|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667777777766644 668888877777888888899999999999999998421 1556776666443332
Q ss_pred CCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 746 GKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 746 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
.+..--....-.+ ..+.|. |...+.+ -|.-.++.++|+..|+++++.+ +....+|+
T Consensus 313 skLs~LA~~v~~i--dKyR~E--TCCiIaN-------------------YYSlr~eHEKAv~YFkRALkLN-p~~~~aWT 368 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--DKYRPE--TCCIIAN-------------------YYSLRSEHEKAVMYFKRALKLN-PKYLSAWT 368 (559)
T ss_pred HHHHHHHHHHHHh--ccCCcc--ceeeehh-------------------HHHHHHhHHHHHHHHHHHHhcC-cchhHHHH
Confidence 2221111111111 112222 1111222 2455668889999999998876 45567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA 905 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 905 (1041)
.+.+-|...++...|++-+++.++-. +-|...|-.|.++|.-.+.+.=|+-.|++..+- -+-|...|.+|++.|.+.+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999863 237789999999999999999999999999885 4568899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHhcCChHH
Q 001632 906 KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA----GIIPDLAC--YRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~~l~~~~~~~g~~~~ 979 (1041)
+.++|++-|......| ..+...+..|+.+|-+.++.++|..+|++.++. |...+... .--|..-+.+.+++++
T Consensus 447 ~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 9999999999999876 345678999999999999999999999997762 22222111 1113334456677777
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 980 GINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 980 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
|-.+....... .-..+||..++++++....
T Consensus 526 As~Ya~~~~~~-----------------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 526 ASYYATLVLKG-----------------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHhcC-----------------CchHHHHHHHHHHHHHhcC
Confidence 76665554332 2345777778777766543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-09 Score=112.66 Aligned_cols=288 Identities=13% Similarity=0.090 Sum_probs=217.1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTC 773 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 773 (1041)
..+..+...-.+-+...+++.+...+++...+.. ++....+..-|..+...|+..+-..+-.++.+..|. ..++|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 4566677777888888999999999999998873 456666777777888888887777777777776554 45566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 774 IKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 774 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.-.|.- .|+..+|++.|.+....+ +.-...|-.+.+.|+-.|..++|+..+....+. +.
T Consensus 319 g~YYl~-------------------i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~ 377 (611)
T KOG1173|consen 319 GCYYLM-------------------IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MP 377 (611)
T ss_pred HHHHHH-------------------hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-cc
Confidence 654443 455555555555554433 222347889999999999999999999888764 11
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----Chh
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ--GIPP----SCT 927 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~ 927 (1041)
-....+--+..-|.+.++.+-|.+.|.+.... .+-|...++-+.-+....+.+.+|...|+..++. .+.+ -..
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 11222333455578899999999999988875 5667888888888888899999999999888841 1111 224
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
++++|+++|.+.+.+++|+..+++.+.. .+.|..++.++.-.|...|+++.|+..|.++....|.|..+-..|..+..
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 6899999999999999999999999885 45588899999999999999999999999999888888777666665443
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=2.1e-10 Score=126.92 Aligned_cols=230 Identities=14% Similarity=0.080 Sum_probs=144.3
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCH
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILV-NTLTNHGKH 748 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~ 748 (1041)
...+...|++++|...++.+....|.+..++..+..++...|++++|.+++..+.+.++. +...+..+- .+. .+..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HHHH
Confidence 344455666666666666666555777778888888888888888888888888887543 222221111 100 0000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 001632 749 EQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLG---LSLDEKAYM 825 (1041)
Q Consensus 749 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 825 (1041)
++ +..+++.+.+..+.+.. .+.+...+.
T Consensus 237 ~~-------------------------------------------------~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 237 DE-------------------------------------------------AMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HH-------------------------------------------------HHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 00 00111112222222221 124778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY---NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS--FTYLSLVQA 900 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~ 900 (1041)
.++..+...|+.++|.+++++..+. .||.... ....-.....++.+.+++.+++..+. .+.|. ....++...
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHH
Confidence 8889999999999999999999886 3454321 11122223456777788888777664 33344 556678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888433322457777777888888888888888888887643
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=1.7e-07 Score=100.05 Aligned_cols=585 Identities=14% Similarity=0.108 Sum_probs=305.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001632 370 KNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALD 449 (1041)
Q Consensus 370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 449 (1041)
..+++.....+.+.+.+. .+-...+.....-.+...|+-++|......-...++. +.+.|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 445555555555555552 2223444444444555666666766666555544332 45556666666666666777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 001632 450 VIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQ-V 528 (1041)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 528 (1041)
.+......+ +.|...+.-+.-.-.+.++++..........+..+.....|..+..++.-.|+...|..+++...+.. .
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 766665543 33445555555555566677777777777777666677777888888888888888888888776653 2
Q ss_pred CCCHHHHHHHHH------HHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHH
Q 001632 529 DFDEELYRSVMK------IYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMAL 602 (1041)
Q Consensus 529 ~~~~~~~~~ll~------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1041)
.|+...|..... ...+.|.++.|.+.+..-... ........
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------------i~Dkla~~ 222 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------------IVDKLAFE 222 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---------------------------------HHHHHHHh
Confidence 456555544332 234556666666555443222 01111222
Q ss_pred HHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHH-HHHHHcCCHHHHHH-H--HHcCCCCCHHHHHHHHHHHhccCC
Q 001632 603 GLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLI-CKFIRDGMRLTFKF-L--MKLGYILDDEVTASLIGSYGKHQK 678 (1041)
Q Consensus 603 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~-~--~~~~~~~~~~~~~~l~~~~~~~~~ 678 (1041)
...+.++.+.++.++|..++..++...|+...++... .++.+-.+..++.. + ......|.......+--.......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 3345667778899999999999998777655443333 33322222222221 1 111111111111111111111122
Q ss_pred HHHHHH-HHHH-hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC------------CCCHH--HHH
Q 001632 679 LKEAQD-VFKA-ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ------GC------------ALDAV--AIS 736 (1041)
Q Consensus 679 ~~~A~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~------------~~~~~--~~~ 736 (1041)
+.+... ++.. +..|.|+ ++..+...|-.-. ++- ++++++.. |. .|... ++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 222221 1111 2233221 2222232222111 111 22222110 00 12222 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 001632 737 ILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLG 816 (1041)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 816 (1041)
.++..+-..|+++.|+.+++..+...+..- -.|-.=.. ++.-.|+++.|..+++.+.+.+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTli-Ely~~KaR-------------------I~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLI-ELYLVKAR-------------------IFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHH-HHHHHHHH-------------------HHHhcCChHHHHHHHHHHHhcc
Confidence 334445555555555555555554432100 00000001 5566778888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc--------cHHHH--HHHHHHcCCHHHHHHHHHHHHHc-
Q 001632 817 LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI--------SYNII--INVYAAAGLYNEVEKLIQAMQRD- 885 (1041)
Q Consensus 817 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m~~~- 885 (1041)
.+|...-.--+....++.+.++|.++.......|. +.+ +|-.+ ..+|.+.|++..|++-|..+.+.
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46666655677778889999999999999988865 332 23222 45678888888888766665442
Q ss_pred -CCCCCHHHHHHH------HHHHHhcC----------C----HHHHHHHHHHHHHCC-CC-CChhHHHHHH----HHHHh
Q 001632 886 -GFSPNSFTYLSL------VQAYTEAA----------K----YSEAEETINSMQKQG-IP-PSCTHVNHLL----SAFSK 938 (1041)
Q Consensus 886 -g~~~~~~~~~~l------~~~~~~~g----------~----~~~A~~~~~~~~~~~-~~-p~~~~~~~l~----~~~~~ 938 (1041)
.+..|.+-|.+. ..+|...= . ...|+++|=.|.+.. .. +.......+. ....+
T Consensus 513 ~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k 592 (700)
T KOG1156|consen 513 KTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKK 592 (700)
T ss_pred HHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHH
Confidence 122233322221 01111110 1 134666776666531 00 1111111111 11111
Q ss_pred c-CCHHHHHHHHHHHH---------HCCCC--CCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 939 A-GLMAEATRVYNESL---------AAGII--PDLACYRTMLKGYMDH-GYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 939 ~-g~~~~A~~~~~~~~---------~~~~~--p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
+ .+-.+|.+--+.+. +.|.+ +|.. -+..-+.+. .-.++|..++..+....+.+..++.....+|
T Consensus 593 ~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely 669 (700)
T KOG1156|consen 593 QRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELY 669 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 1 11222222222221 11322 3333 234444444 4478899999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHhhc
Q 001632 1006 RYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+.|++.-|.+.+++...
T Consensus 670 ~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 670 YRKGKFLLALACLNNAEG 687 (700)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999998887654
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=6.2e-10 Score=122.35 Aligned_cols=284 Identities=12% Similarity=0.022 Sum_probs=194.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCChHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS--QLISLSIKHGKSDEAL 343 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~ 343 (1041)
.|++++|.+.+....+..-.| ...|........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666544432111 222333344446778888888888887765 44543332 2245667788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001632 344 SLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEV-------IYGLLIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 344 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~ 416 (1041)
..++++.+.... +...+..+...|.+.|+++.|.+++..+.+.+..++.. .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887766533 45667777778888888888888888887765442221 2222233333334455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 001632 417 AETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPD 496 (1041)
Q Consensus 417 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 496 (1041)
+.+.+. .+.+......+...+...|+.++|..+++...+. .++.. ..++.+.+..++.+++.+..+...+..+.|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 555432 2346777778888888888888888888888774 33442 123444455688888888888888888888
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 001632 497 AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGK 560 (1041)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 560 (1041)
...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888889999999999999999999988874 68888888899999999999999888887544
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=3.1e-11 Score=128.74 Aligned_cols=291 Identities=14% Similarity=0.031 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 001632 677 QKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGC--ALDAVAISILVNTLTNHGKHEQAEII 754 (1041)
Q Consensus 677 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 754 (1041)
-+..+|...|..+.........+...+..+|...+++++|..+|+.+..... .-+..+|.+.+-.+- +. -++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~-v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DE-VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hh-HHHHH
Confidence 3567889999886655555556777899999999999999999999987521 114456666554443 22 23333
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001632 755 IHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKA 834 (1041)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 834 (1041)
+.+-+-..-+..+.+|.++...|.- +++.+.|++.|+++...+ +....+|+.+.+-+...
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSL-------------------Qkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ 468 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSL-------------------QKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhh-------------------hhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhh
Confidence 3332222334467789999886544 456666666666666543 23677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 835 GKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEET 913 (1041)
Q Consensus 835 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 913 (1041)
..+|+|+..|+..+.. .|.. -.|-.|...|.+.++++.|+-.|++..+- -+-+.+....++..+.+.|+.++|+.+
T Consensus 469 ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-NPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-CccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 9999999999998764 2322 34555678899999999999999999885 245677777888899999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 914 INSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 914 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
++++...+ +.|+..-...+..+...+++++|+..++++++. .+-+...+-.++..|.+.|+.+.|+.-|.-+.+..|+
T Consensus 546 ~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 546 YEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999865 566666677888899999999999999999984 3335677888889999999999999999999887776
Q ss_pred hHH
Q 001632 994 DKF 996 (1041)
Q Consensus 994 ~~~ 996 (1041)
-..
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 443
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.4e-09 Score=110.54 Aligned_cols=403 Identities=15% Similarity=0.133 Sum_probs=251.7
Q ss_pred HHhhhhccCcccHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCCH
Q 001632 603 GLMLSLYLTDDNFSKREKILKLLLHTA-GGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYG--KHQKL 679 (1041)
Q Consensus 603 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 679 (1041)
..-+..+...+++++|.+...+++... .+...+.+-+-++++.+++++|..+++.....+......+=.+|| +.+..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 334566778899999999999999874 456678889999999999999998665543222221111344554 78999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 001632 680 KEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCAL-DAVAISILVNTLTNHGKHEQAEIIIHNS 758 (1041)
Q Consensus 680 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 758 (1041)
++|...++.+. +.+..+...-...+.+.|++++|+++|+.+.+++..- |...-..++.+-.. ..+ . +.+.
T Consensus 96 Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-Q-LLQS 166 (652)
T ss_pred HHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-H-HHHh
Confidence 99999998444 4455567777788899999999999999998874321 11111111111110 011 0 1111
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH------------------------------HHhccCChHHHHH
Q 001632 759 FQDNLDLD-TVAYNTCIKAMLGAGKLHFAASIYERML------------------------------VYGRGRKLDKALE 807 (1041)
Q Consensus 759 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~~~~~A~~ 807 (1041)
....+..+ ...||. .-.+...|+|.+|+++++... ++...|+.++|..
T Consensus 167 v~~v~e~syel~yN~-Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNT-ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCCcchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11111111 122332 234567888989988888773 6778899999999
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHHHhc---------------CCH-HHHHHHH-----------------------
Q 001632 808 MFNTARSLGLSLDEK----AYMNLVSFYGKA---------------GKT-HEASLLF----------------------- 844 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~----~~~~l~~~~~~~---------------g~~-~~A~~~~----------------------- 844 (1041)
+|..++.... +|.. .-|.|+..-... +.+ +.+..-|
T Consensus 246 iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 246 IYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999988763 3332 222222211000 000 0000000
Q ss_pred --HHHHHc--CCCCCcccHHHHHHH-H-HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--
Q 001632 845 --SEMQEE--GIKPGLISYNIIINV-Y-AAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAEETIN-- 915 (1041)
Q Consensus 845 --~~m~~~--g~~p~~~~~~~l~~~-~-~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-- 915 (1041)
++.... +..|... +.+++.. + .+...+.+|.+++...-+. .+.. ......+++....+|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHhCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111111 2233322 2333332 2 2333578888888877664 3333 4556667778889999999999999
Q ss_pred ------HHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCChHHHHHH
Q 001632 916 ------SMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA--GIIPDLACYRTML----KGYMDHGYIEEGINL 983 (1041)
Q Consensus 916 ------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~----~~~~~~g~~~~A~~~ 983 (1041)
.+.+.+..| .+...+...+.+.++.+-|..++.+.+.. .-.+.....++++ .--.++|+-++|...
T Consensus 403 ~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 666655445 45566777888888777777777776532 0122233333333 334578999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
++++.+..|+|..++..++-+|+.. +.+.|..+=+.+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999974 557777765544
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-08 Score=100.21 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=119.3
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSF-----YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAA 868 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 868 (1041)
-|.+.+++.+|..+.+.+.. ..|-....-.++.+ ......+.-|.+.|+-.-+.+..-|. ....++...+.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 35666777777766655432 12333333333322 12223456677777766665554444 335567777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
..++++++..++.+...=...|.+.+| +.++++..|++.+|+++|-.+....++.+..-...|+++|.++|..+-|-++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 788888888888877753334444444 6788888999999999888777654444444445677888888888877666
Q ss_pred HHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhc
Q 001632 949 YNESLAAGIIPDLACYRTM-LKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 949 ~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+-++ .-+.+......+ ...|++.+++=-|-+.|+.+...
T Consensus 451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 6554 233344444333 45788888887777777766543
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.7e-09 Score=110.61 Aligned_cols=495 Identities=13% Similarity=0.069 Sum_probs=303.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 461 LSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMK 540 (1041)
Q Consensus 461 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 540 (1041)
.+..-+..+++-+.....+..|.-+-+++...+ .++...-.+..++.-.++++.|..++..-.-. ..|..+......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 345667777777777778888888888777666 55566666788888888888888777654221 236677777778
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHH
Q 001632 541 IYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREK 620 (1041)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 620 (1041)
++.+..++++|..++..-... -+... ..+....+.+..-..........-.+.+.-+|.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~---~~~f~------------yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk------ 149 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE---TNPFS------------YYEKDAANTLELNSAGEDLMINLESSICYLRGK------ 149 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh---hcchh------------hcchhhhceeccCcccccccccchhceeeeeee------
Confidence 888888899888887742100 00000 000000000000000000000000001111111
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhh--cCCCCCh
Q 001632 621 ILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKH-QKLKEAQDVFKAAT--VSCKPGK 697 (1041)
Q Consensus 621 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~--~~~~~~~ 697 (1041)
.|....++++|....+.++..|...+.++...-... --.++-.++|+.+. .....++
T Consensus 150 --------------------~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~ 209 (611)
T KOG1173|consen 150 --------------------VYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDV 209 (611)
T ss_pred --------------------hhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHH
Confidence 111222233333333333333333333222211110 01112222222211 0111122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 698 LVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 698 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
.....+.....-...-++....-.+..-.+..-+.........-+...+++.+..++...+.+..+- ....+..-|..+
T Consensus 210 e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l 288 (611)
T KOG1173|consen 210 ERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHH
Confidence 2222222211111111111111111111233446666777777788889999999999998876542 222233333333
Q ss_pred HhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-
Q 001632 778 LGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL- 856 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 856 (1041)
. +.|+..+-..+-.++.+. .|....+|-++.-.|.-.|+..+|++.|.+...- .|.-
T Consensus 289 ~-------------------el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fg 346 (611)
T KOG1173|consen 289 Y-------------------ELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFG 346 (611)
T ss_pred H-------------------HhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--Ccccc
Confidence 3 344445555555555554 3566778999999999999999999999998764 3332
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
..|..+...|+-.|..+.|+..+...-+. ++-....+..+.--|.+.++.+.|.++|.+..... |.|+...+-++-..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVA 424 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhhee
Confidence 57888999999999999999999887764 44455566667777999999999999999999853 66777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 937 SKAGLMAEATRVYNESLAA--GIIP----DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
...+.+.+|..+|+..++. ...+ =..+++.|..+|.+.+.+++|+..++++....|.|+.++..++.+|...|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 8899999999999998732 0111 234688899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcc
Q 001632 1011 EHEANDILDSMNSV 1024 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~~ 1024 (1041)
.+.|.+.+.+.+-.
T Consensus 505 ld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 505 LDKAIDHFHKALAL 518 (611)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999887653
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=5.2e-09 Score=111.26 Aligned_cols=413 Identities=17% Similarity=0.150 Sum_probs=278.1
Q ss_pred cCcccHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHH
Q 001632 610 LTDDNFSKREKILKLLLHTAG-GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDE---VTASLIGSYGKHQKLKEAQDV 685 (1041)
Q Consensus 610 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~ 685 (1041)
...+++.+-++.++.++...+ ...+.....-.+...|+.++|......|+..|.. .+..+.-.+-...++++|++.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345889999999999988533 3445555556788899999999988888776653 455666667778899999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCC-CC
Q 001632 686 FKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN-LD 764 (1041)
Q Consensus 686 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 764 (1041)
|..+....+.|..+|.-+.-.-++.++++...+......+.. ......|..+.-+..-.|+...|..+++...+.. -.
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999887778999999999988999999999999988888752 1244567777778888899999999999887765 24
Q ss_pred CChhhHHHHH------HHHHhcCChhHHHHHHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 765 LDTVAYNTCI------KAMLGAGKLHFAASIYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 765 ~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
|+...|.... ..+..+|.++.|.+.....- .+.+.+++++|..+|..++... +.|...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHH
Confidence 4444443322 23455677777766554322 5667778888888888877764 233334
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHEAS-LLFSEMQEEGIKPGLISYN-IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
|..+..++.+-.+.-++. .+|....+. .|-...-. .=++......-.+..-+.+..+.+.|+++--..+.+| |
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---y 330 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---Y 330 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---H
Confidence 444455554333333444 555555443 11111111 1111111112233334555666666765543333333 3
Q ss_pred HhcCCHHHHHHHHHHHHH----CC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 001632 902 TEAAKYSEAEETINSMQK----QG----------IPPSCTHV--NHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACY 964 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 964 (1041)
-.-...+-.+++...+.. .| -+|....| ..++..|-+.|+++.|+.+++.++.. -|+ ..-|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 222122211222222221 10 14555544 46677888999999999999999874 454 4467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchhc
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKN 1031 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 1031 (1041)
..-.+.+...|++++|..+++++++...+|..+....+....++.+.++|.++....-..|.....+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 7777889999999999999999999999999999999999999999999999999998888644333
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.1e-09 Score=106.26 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=146.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 001632 336 HGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK-VAAD--EVIYGLLIRIYGKLGLYEDA 412 (1041)
Q Consensus 336 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A 412 (1041)
+.+.++|.++|-+|.+.+.. +..+--+|-+.|-+.|..+.|+++.+.+.++. ..-+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34555555555555543211 23334445555555566666666665555431 1101 11223345556666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001632 413 QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSR----FAYIVMLQCYVMKEDLGSAEGTFQT 488 (1041)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 488 (1041)
+.+|..+.+.+.. -......|+..|-...++++|++.-+++.+.+-.+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7777766654321 2345556677777777777777777776665443332 2556666666677788888888888
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 001632 489 LAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562 (1041)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 562 (1041)
..+.++..+.+--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88877777777777788888888888888888888887666667778888888888898888888888887763
No 65
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.3e-07 Score=100.91 Aligned_cols=249 Identities=14% Similarity=0.144 Sum_probs=146.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHH
Q 001632 192 LYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKER-G--------IVPSTAVFNFMLSS 262 (1041)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~~~~~~~~~li~~ 262 (1041)
.|...|+.+.|.+-.+-+. +...|..|.+.|.+..+.+-|.-.+-.|... | -.++ .+-.-+...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3445566666655554443 2355666666666666666555555444321 1 0111 111112222
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 342 (1041)
....|..++|+.+|++-++ |..|=..|-..|.+++|.++-+.=-... =..||..-..-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 3356777778887777655 3445555666788888877664422211 124566666666667778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001632 343 LSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL 422 (1041)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (1041)
++.|++-.. |-...+. ++ ..++...+++.+.+. |...|......+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~----hafev~r-mL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 878 LEYYEKAGV----HAFEVFR-ML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHhcCC----hHHHHHH-HH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 887776421 1111111 11 122333333333332 456677777777788889988888876554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001632 423 GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLA 490 (1041)
Q Consensus 423 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 490 (1041)
|-.+++..|-+|+.++|-++-++-. |....-.|.+.|-..|++.+|...|.+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667777888888888888877632 44566678888888888888888887554
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.9e-10 Score=116.95 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
.....+..+...|...|++++|...+++..+.. ..+...+..+...|...|++++|++.+++..+. .+.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Confidence 335677788899999999999999999998763 123567788889999999999999999999886 345667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGI-PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
..+...|++++|.+.++++.+... +.....+..++.++...|++++|.+.+++.++. .+.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCH
Confidence 899999999999999999987432 233456778899999999999999999999875 333567788888999999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++|...++++.+..+.++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998887777888888899999999999999999888754
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=1.4e-07 Score=92.61 Aligned_cols=166 Identities=16% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcC-C-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVS-C-KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHG 746 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 746 (1041)
+..-.+....+.-|.+.|..+-.+ . ...+.--.++...+.-..++++.+..++.+..--..-|...+ .+..+.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 333344444566777877775421 1 223334556777777777888888777777665333333333 3445555556
Q ss_pred CHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 001632 747 KHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMN 826 (1041)
Q Consensus 747 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 826 (1041)
++.+|+++|-.+.. ..+..+..-...
T Consensus 408 ny~eaEelf~~is~------------------------------------------------------~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 408 NYVEAEELFIRISG------------------------------------------------------PEIKNKILYKSM 433 (557)
T ss_pred ChHHHHHHHhhhcC------------------------------------------------------hhhhhhHHHHHH
Confidence 55555555544332 222222222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY 894 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 894 (1041)
|..+|..+++.+-|..++-++-. .-+..+. ..+.+.|.+.+.+--|.+.|+.+.. ..|+...|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 56667777777776555544422 1122222 2334556666666666666665554 34555444
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2e-09 Score=104.46 Aligned_cols=295 Identities=13% Similarity=0.102 Sum_probs=200.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASI 789 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 789 (1041)
++++++|.++|-+|.+... -...+--+|-+.|.+.|..|.|+.+.+.+.+..-- |+..-. ..+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~------------lAl 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRL------------LAL 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC----chHHHH------------HHH
Confidence 5788899999999988521 12234456677788889999999998887765311 111111 111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHH
Q 001632 790 YERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI----SYNIIINV 865 (1041)
Q Consensus 790 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~ 865 (1041)
++-..-|-..|-+++|.++|..+.+.+ .--....-.|+..|-+..+|++|+..-+++.+.|-.+..+ -|.-|...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 111114666777888888888887754 3345567778999999999999999999998875443322 23344555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
+....+.+.|..++++..+.+ +.....-..+...+...|++..|.+.++.+.+.+..--..+...|..+|...|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 556788999999999988862 3334445567788999999999999999999976222335778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh---cCChhHHHHHHHHhh
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY---AGKEHEANDILDSMN 1022 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA~~~~~~~~ 1022 (1041)
+..+.++.+. .+....-..+...-....-.+.|..++.+-.. ..|+...+..++..... .|++.+.+.+++.|.
T Consensus 269 ~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 9999999874 34444444444433333334555555544333 25666677777776543 566788888888886
Q ss_pred ccCc
Q 001632 1023 SVRI 1026 (1041)
Q Consensus 1023 ~~~~ 1026 (1041)
...+
T Consensus 346 ge~l 349 (389)
T COG2956 346 GEQL 349 (389)
T ss_pred HHHH
Confidence 5433
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.33 E-value=1.3e-06 Score=97.66 Aligned_cols=274 Identities=12% Similarity=0.035 Sum_probs=140.1
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHccCCHHHHHHHHH
Q 001632 682 AQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ-GCALDAVAISI----LVNTLTNHGKHEQAEIIIH 756 (1041)
Q Consensus 682 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~ 756 (1041)
|.-..+..-.+.|.+...|.......-+.+.+.+|.++..+.+.- ..+.|..+|+. +...++..|.++.|...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 333344444566778888888888888888888888877775421 01223444442 2334555566665533322
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc
Q 001632 757 NSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL-GLSLD-EKAYMNLVSFYGKA 834 (1041)
Q Consensus 757 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 834 (1041)
..-. .++...+. .+- ...-.++++++.+.|++++.. .-..+ +.....++-+...+
T Consensus 1032 ~~~~-------evdEdi~g-------t~l---------~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1032 KEWM-------EVDEDIRG-------TDL---------TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred ccch-------hHHHHHhh-------hhH---------HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 1110 00000000 000 011135677777777777653 11223 23455566666778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 835 GKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD----GFSPNSFTYLSLVQAYTEAAKYSEA 910 (1041)
Q Consensus 835 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~g~~~~A 910 (1041)
+.-+.|...+-+.... -+|+..+.-.+...+.-..+-.....+++++.+. -+.-+..-... ..|.+.|+-.-.
T Consensus 1089 ~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e--~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKE--LIYALQGRSVAV 1165 (1238)
T ss_pred ccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHH--HHHHHhhhhHHH
Confidence 8888888887777664 2455555555555554444433333344443331 01111111222 236788888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
.+.+++.+-.. |.|+..|..|-.-|.. +-.+ +.++-+-+-.+|+-. ..++-.+++.-.
T Consensus 1166 k~~~qr~~h~~-P~~~~~WslL~vrya~------------~n~~-----n~v~a~~~~k~y~~t----~~l~~iQ~a~~L 1223 (1238)
T KOG1127|consen 1166 KKQIQRAVHSN-PGDPALWSLLSVRYAQ------------RNAK-----NGVVANHGKKAYLYT----AVLKTIQKAALL 1223 (1238)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHHH------------Hhcc-----CCeehhHHHHHHHHH----HHHHHHHHHHhc
Confidence 88888888753 4555566554422221 1111 111113344444322 235555565566
Q ss_pred cCChHHHHHHHHH
Q 001632 991 SESDKFIMSAAVH 1003 (1041)
Q Consensus 991 ~~~~~~~~~~l~~ 1003 (1041)
.|-|+.++-.|..
T Consensus 1224 ~Pwd~a~wkaL~~ 1236 (1238)
T KOG1127|consen 1224 SPWDPAIWKALMA 1236 (1238)
T ss_pred CCCCHHHHHHHhh
Confidence 7888877766643
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=3.2e-10 Score=130.40 Aligned_cols=177 Identities=12% Similarity=-0.041 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 837 THEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETIN 915 (1041)
Q Consensus 837 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 915 (1041)
+++|...+++..+. .| +...+..+..++...|++++|+..|++..+. .+.+...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555443 22 2233444444445555555555555555443 12233344444455555555555555555
Q ss_pred HHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 916 SMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 916 ~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
++.+.+ |+.. .+..++..+...|++++|+..++++++. .+| ++..+..+...|...|++++|...++++....|.
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 555532 3221 2222333344445555555555554432 122 2333344444444555555555555554444344
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 994 DKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 994 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
+......++..|...| ++|...++++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 4444444444444444 2444444443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=3e-07 Score=100.33 Aligned_cols=358 Identities=14% Similarity=0.071 Sum_probs=227.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 658 GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI 737 (1041)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 737 (1041)
.+..|..++..+.-++..+|+++.+.+.|++.....-.....|..+...|..+|.-..|..+++........|+..+...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45578889999999999999999999999997766666778899999999999999999999998876644465555555
Q ss_pred HHHHHH--ccCCHHHHHHHHHHhccC--C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 738 LVNTLT--NHGKHEQAEIIIHNSFQD--N--LDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNT 811 (1041)
Q Consensus 738 l~~~~~--~~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~ 811 (1041)
++...| +.+..++++.+..+++.. + -......|-.+.-+|...- .+|..-. .+.....++++.+++
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--~~a~~~s------eR~~~h~kslqale~ 469 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--RQANLKS------ERDALHKKSLQALEE 469 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--hcCCChH------HHHHHHHHHHHHHHH
Confidence 554433 557888888888887762 2 1223333444333332110 0000000 011123455666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 812 ARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 812 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
..+.+. .|..+.--+.--|+..++++.|+...++..+-+-.-+...|..++-++...+++.+|+.+.+...+. +..|.
T Consensus 470 av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 655442 2222222233346666777777777777777644556677777777777777777777776665542 11111
Q ss_pred --------------------HHHHHHHHHHH-----------------------hcCCHHHHHHHHHHHHH--------C
Q 001632 892 --------------------FTYLSLVQAYT-----------------------EAAKYSEAEETINSMQK--------Q 920 (1041)
Q Consensus 892 --------------------~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~~~~--------~ 920 (1041)
.|...++..+. ..++..+|.+....+.. .
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 11111111111 00111122222211110 0
Q ss_pred C----CC-------CCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001632 921 G----IP-------PSC------THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 921 ~----~~-------p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
| ++ |+. ..|....+.+.+.+..++|.--+.++.+. .+-....|......+...|++++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 1 11 111 13445667788888889998888887763 333566777777788899999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHH--HHHHhhccCc
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEAND--ILDSMNSVRI 1026 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~ 1026 (1041)
|..+....|.+..+...++.++...|+..-|.. ++..+.+.+-
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 999999999999999999999999998888887 8888877664
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=6.4e-09 Score=104.58 Aligned_cols=285 Identities=11% Similarity=0.072 Sum_probs=170.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASI 789 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 789 (1041)
.|++.+|..+..+-.+.+-. ....|..-..+-...|+.+.+-.++.++.+....+...++-+........|+
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 45555555555554443311 1122223333444555555555555555554444444444444443333333
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-------ccHHHH
Q 001632 790 YERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-------ISYNII 862 (1041)
Q Consensus 790 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l 862 (1041)
+..|..-..++.+.+ +.+..+......+|.+.|++.....++.++.+.|.--|. .+|+.+
T Consensus 169 ------------~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 169 ------------YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred ------------chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 333333333344444 455667777777788888888888888887777654332 234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
++-....+..+.-...|+....+ ..-+...-.+++.-+.+.|+.++|.++.++..+++-.|+ ...+ -...+-|+.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCc
Confidence 44444444444444555555443 444556666677777788888888888888877654444 1111 223355677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.-++..++.++. .+-++..+.+|...|.+++.|.+|..+|+.+.. ..++...+.-+++++.+.|+.++|.++.++..
T Consensus 311 ~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 311 EPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777777777664 444567777888888888888888888887665 56667778888888888888888888777655
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=6.3e-08 Score=97.59 Aligned_cols=287 Identities=15% Similarity=0.050 Sum_probs=213.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSL 345 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 345 (1041)
.|+|.+|+++...-.+.+-.| ...|..-+.+.-..|+.+.+-+++.+..+..-.++...+-+....+...|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655433 3456666677777888888888888888763355666677777788888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 346 YKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEV-------IYGLLIRIYGKLGLYEDAQKTFAE 418 (1041)
Q Consensus 346 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 418 (1041)
++++.+.+.. +........++|.+.|++.....++..+.+.|.-.|.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888776544 45677778888888888888888888888887655543 445555544444555554455555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh
Q 001632 419 TEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAG 498 (1041)
Q Consensus 419 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 498 (1041)
.... .+.+...-.+++.-+.+.|+.++|.+++++..+++..++. ...-.+.+-++...-++..++-.+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5433 3446667777888888889999999998888887766652 1222455667777777777777777777778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 499 SCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
.+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+...|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 889999999999999999999997766 4788999999999999999999999888876543
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.3e-07 Score=102.77 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 463 RFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542 (1041)
Q Consensus 463 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 542 (1041)
...|.-..+..-..|+.+.|+.+|....+ |.++++..|-+|+.++|-.+-++- -|....-.|.+.|
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY 977 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh
Confidence 34455555556667888888888876543 677788888889999988776553 3566677788999
Q ss_pred HhcCChhhHHHHHHHHhh
Q 001632 543 CKEGMVTDAEQFVEEMGK 560 (1041)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~ 560 (1041)
-..|++.+|..+|.+.+.
T Consensus 978 En~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=7.3e-10 Score=127.46 Aligned_cols=226 Identities=14% Similarity=0.005 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+.
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788888898888876 567788889999999999999999999999987 455 4567888999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 878 LIQAMQRDGFSPNS-FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.+++..+. .|+. ..+..++.++...|++++|+..++++.+.. +| +...+..++.+|...|++++|...++++...
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999885 3443 333445556777899999999999998764 34 4456788999999999999999999997663
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchhcccc
Q 001632 956 GIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEV 1034 (1041)
Q Consensus 956 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 1034 (1041)
.|+ ....+.+...|...| ++|...++++.+.....+........+|.-.|+.+.|.-. +++.+.+--+.+.+++
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 545 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKRWKQ 545 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhhhhhhc
Confidence 444 445556666777777 4888888887664433333333366777778887777555 9998887766666654
Q ss_pred c
Q 001632 1035 G 1035 (1041)
Q Consensus 1035 ~ 1035 (1041)
-
T Consensus 546 d 546 (553)
T PRK12370 546 D 546 (553)
T ss_pred C
Confidence 3
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.9e-08 Score=96.52 Aligned_cols=280 Identities=13% Similarity=0.131 Sum_probs=164.5
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhccCCCCCChh
Q 001632 690 TVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVA-ISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTV 768 (1041)
Q Consensus 690 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 768 (1041)
...++.|+.....+.+.+...|+.++|...|++.... .|+..+ +....-.+...|+.++-.++...+....-. ...
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~ 301 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TAS 301 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chh
Confidence 3445566666666666666666666666666665543 232221 111122234455555555555554432200 000
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 769 AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ 848 (1041)
Q Consensus 769 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 848 (1041)
.|-.-... ....+++..|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+..+
T Consensus 302 ~wfV~~~~-------------------l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 302 HWFVHAQL-------------------LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhh-------------------hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 11111111 112234555555555555543 2344445445566667777888877777776
Q ss_pred HcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 001632 849 EEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV-QAYTE-AAKYSEAEETINSMQKQGIPPS 925 (1041)
Q Consensus 849 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 925 (1041)
.. .| +..+|..|+..|...|.+.+|.-+-.+..+. ++.+..+...+. .++.. -.--++|.++++..+. +.|+
T Consensus 362 ~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~ 436 (564)
T KOG1174|consen 362 ML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI 436 (564)
T ss_pred hc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence 64 32 4567777888888888888877777666554 444555555442 33322 2223777777777776 3466
Q ss_pred hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHH
Q 001632 926 CT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMS 999 (1041)
Q Consensus 926 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 999 (1041)
.. ..+.+...+...|..++++.++++.+. ..||....+.|...+...+.+.+|...|..+....|.|-.+..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 44 566777777778888888888888776 5677777777777777777888888888887777777665543
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=1.1e-05 Score=90.74 Aligned_cols=658 Identities=10% Similarity=-0.023 Sum_probs=343.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 304 LEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSE 383 (1041)
Q Consensus 304 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 383 (1041)
...|...|-+..+.+ ..=...|..|...|+...+...|.+.|+...+-+.. |......+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 556666665555542 112345777777777766777777777777655432 556667777778888888887777433
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 384 MEKFKV-AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLS 462 (1041)
Q Consensus 384 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 462 (1041)
..+... ..-..-|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.+.|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 322110 001112222444556677777777777777665432 6777778888888888888888888776553 232
Q ss_pred HH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcC
Q 001632 463 RF-AYIVMLQCYVMKEDLGSAEGTFQTLAKTGLP-------DAGSCNDMLNLYIKLDLTEKAKGFIAH-------IRKDQ 527 (1041)
Q Consensus 463 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~~ 527 (1041)
.. .--...-..+..|.+.++.+.+..+...... -..++-.+...+...|-..+|.++++. .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 21 1112223345667777777777766543221 122222222222223333333333333 22222
Q ss_pred CCCCHHHHHHHHHHH---HhcCChhhHH----HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhh
Q 001632 528 VDFDEELYRSVMKIY---CKEGMVTDAE----QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLM 600 (1041)
Q Consensus 528 ~~~~~~~~~~ll~~~---~~~g~~~~A~----~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1041)
...+...|..+-.+| +....---+. -++.++...+..|+......-...+. .+...-..+.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~------------~hlsl~~~~~ 776 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI------------AHLSLAIHMY 776 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh------------HHHHHhhccc
Confidence 122222232222221 1111000000 11112222233333331110000000 0111122244
Q ss_pred HHHHhhhhccC--------cccHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHcCCHHHHHH-HHH--cCCCCCHHHHHH
Q 001632 601 ALGLMLSLYLT--------DDNFSKREKILKLLLHT-AGGSSVVSQLICKFIRDGMRLTFKF-LMK--LGYILDDEVTAS 668 (1041)
Q Consensus 601 ~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~-~~~--~~~~~~~~~~~~ 668 (1041)
.|.-++..|.. ..+-..|+..+++.+.- ..+...|+.+... ...|.+.-+.. .++ .-.+....++..
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec
Confidence 55555544443 23345777777777764 4555667776555 55577777766 222 223345567778
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH--HH--cCCCCCHHHHHHHHHHHHc
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEA--TA--QGCALDAVAISILVNTLTN 744 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~~~~~~~~~l~~~~~~ 744 (1041)
+...+.+..+++.|...|.++....|.+...|-.........|+.-++..+|..- .. .|--++..-|.........
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 8888889999999999999999888999999988888888889888888888762 22 2333343333333333445
Q ss_pred cCCHHHHHHHHHHhcc---------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 001632 745 HGKHEQAEIIIHNSFQ---------DNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL 815 (1041)
Q Consensus 745 ~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 815 (1041)
+|++++-+...+.+-. .+.+.+...|........+.+.++.|.+...+.+ .+++.-
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli------------glLe~k--- 1000 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI------------GLLELK--- 1000 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHH---
Confidence 5655554444333222 1233355666666666666666777666666543 222221
Q ss_pred CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC
Q 001632 816 GLSLDEKAYM----NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD-GFSPN 890 (1041)
Q Consensus 816 ~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~ 890 (1041)
-+...|| .+...++..|.++.|...+...... .+.....+-+.. .-.|+++++++.|++...- .-.-|
T Consensus 1001 ---~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1001 ---LDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred ---HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccc
Confidence 1222233 2334455556666555444322111 011111111111 3357788888888887652 11223
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHH
Q 001632 891 S-FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACY--RTM 967 (1041)
Q Consensus 891 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l 967 (1041)
. +....+.......+.-+.|...+-+..... +++..+.-.|.-.+.-..+-....-+.+++.+. ......+| ..+
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLL 1151 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHH
Confidence 2 223334444456667777777777766642 455555555544444333333333333333321 11111111 011
Q ss_pred H-HHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 968 L-KGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 968 ~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
+ ..|.+.|+-....+.+++.....|.|+..+..|..
T Consensus 1152 ~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1152 KELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 2 23456777778888888888888888888777764
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2.7e-09 Score=115.85 Aligned_cols=202 Identities=20% Similarity=0.245 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC
Q 001632 824 YMNLVSFYGKAGKTHEASLLFSEMQEE-----GI-KPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRD-----G-FSPN 890 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~ 890 (1041)
.+.+...|...+++++|..+|+++... |- .|.+ .+++.|...|.+.|++++|..++++..+- | ..|+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 445778888899999999999888763 32 1222 45667777899999998888877776541 2 2333
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-
Q 001632 891 SFT-YLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSC----THVNHLLSAFSKAGLMAEATRVYNESLAAG----I- 957 (1041)
Q Consensus 891 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~- 957 (1041)
..+ ++.++..+...+++++|..+++...+. -..++. .+++.|+..|.+.|++++|+++++++++.- -
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 333 556677788999999999999887752 112222 478999999999999999999999987531 1
Q ss_pred -CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------ccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 958 -IP-DLACYRTMLKGYMDHGYIEEGINLFEEVRE-------SSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 958 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
.+ ....++.|...|.+.+++++|..+|.+... ..|....+|..|+.+|...|++++|.++.+.+....
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 12 234677888899999999999998888544 123345789999999999999999999999887543
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=4.4e-09 Score=108.08 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=155.7
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE 874 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 874 (1041)
.|...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHH
Confidence 3555666777777777766654 45577888899999999999999999999988632 244667788899999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 875 VEKLIQAMQRDGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 875 A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
|++.+++..+... ......+..+..++...|++++|...+++..+.. +.+...+..++..+...|++++|.+.+++.+
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999987422 2344567778888999999999999999999864 4456688899999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 954 AAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 954 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 197 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 197 QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 86 3456777777888888999999999998887654
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.5e-07 Score=97.68 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001632 836 KTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ--------AMQRDGFSPNSFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l~~~~~~~g~~ 907 (1041)
.+.+|.+++...-+....-..+..-.++......|+++.|++++. .+.+.+..|.. ..++...|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCC
Confidence 467777777777665221123444556667778888888888888 55554444544 34455567777777
Q ss_pred HHHHHHHHHHHH--CCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001632 908 SEAEETINSMQK--QGIPPSCT----HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 908 ~~A~~~~~~~~~--~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 981 (1041)
+-|..++.+.++ ....+... .+.-++.+-.+.|+-++|..+++++++. .++|..+...++.+|.+. |.++|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 777777777764 11122222 3344445556678889999999998875 466788888888888766 467777
Q ss_pred HHHHH
Q 001632 982 NLFEE 986 (1041)
Q Consensus 982 ~~~~~ 986 (1041)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 66554
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=105.60 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=175.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHH
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLI 879 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 879 (1041)
-+.+|.+.|+..+.. .|-+.||-.|...|.+-.+...|+.++.+-.+. .|..+|| ..+.+.+...++.++|+++|
T Consensus 238 m~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred ChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 333444444444443 356677777888899999999999999988876 4555554 56788889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 880 QAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 880 ~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
+...+. .+.+.....++...|.-.++++-|+.+|+++++.| -.++..|++++-+|.-.+++|-++.-|++.+..--.|
T Consensus 314 k~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 314 KLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred HHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 998885 45566667777778888999999999999999988 4677889999999999999999999999988754445
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 960 D--LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 960 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
+ ..+|-.+.......||+.-|..-|.-+....+.+...++.|+.+-.+.|+.++|..++....+.
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4 4567777777888999999999999988889999999999999999999999999999876553
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=9.2e-09 Score=111.81 Aligned_cols=254 Identities=24% Similarity=0.244 Sum_probs=172.1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChh-hHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTV-AYNT 772 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 772 (1041)
|.-..+...+...|...|++++|..+++..++. .+-..|. ..+... ..+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~--------------l~k~~G~---------------~hl~va~~l~~ 246 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI--------------LEKTSGL---------------KHLVVASMLNI 246 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------HHHccCc---------------cCHHHHHHHHH
Confidence 333445555777777788888887777776653 0000010 001111 1123
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-- 850 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 850 (1041)
+...|...+++++|..+|++ |+.+++...-...+--..+++.|..+|.+.|++++|...+++..+-
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~------------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEE------------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HHHHHHHhccHHHHHHHHHH------------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 44555666666666666654 3344544443333333457888999999999999998888876542
Q ss_pred ---CCC-CCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 851 ---GIK-PGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRD---GFSPN----SFTYLSLVQAYTEAAKYSEAEETINSMQ 918 (1041)
Q Consensus 851 ---g~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 918 (1041)
|.. |.+ ..++.++..|...+.+++|..+++...+. -+.++ ..+++.|...|.+.|++++|++++++++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 222 222 23566778889999999999999987652 12233 3578899999999999999999999998
Q ss_pred HC----CC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 001632 919 KQ----GI--PP-SCTHVNHLLSAFSKAGLMAEATRVYNESLA----AGII-PD-LACYRTMLKGYMDHGYIEEGINLFE 985 (1041)
Q Consensus 919 ~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 985 (1041)
.. +- .+ .-..++.|+..|.+.+.+.+|.++|.+... .|.. |+ ..+|..|...|...|++|+|+++.+
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 53 11 12 234788999999999999999999998643 2222 23 4689999999999999999999999
Q ss_pred HHH
Q 001632 986 EVR 988 (1041)
Q Consensus 986 ~~~ 988 (1041)
.+.
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 965
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.1e-07 Score=96.29 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001632 366 SLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSD-EKTYLAMAQVHLTSRNV 444 (1041)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 444 (1041)
++.+..|+++.|...|.+.+.... +|.+.|+.-..+|.+.|++++|.+=-.+-.+. .|+ ...|+....++...|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456677888888888888777653 37777888888888888888776655554443 333 45677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001632 445 EKALDVIELMKSRNMWLSRFAYIVMLQCY 473 (1041)
Q Consensus 445 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 473 (1041)
++|+.-|.+-.+.. +.|...++.+.+++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 88887777766553 33455566666655
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=2.6e-09 Score=99.10 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
+...|.-.|...|+...|..-+++.++. .|+. .+|..+...|-+.|..+.|.+.|++..+. -+.+-...|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHH
Confidence 4555666777777777777777777776 3433 56667777777777777777777777764 233445566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPS-CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 980 (1041)
|..|++++|.+.|++..+.-.-+. ..+|.+++.+..++|+.+.|.+++++.++. .+..+.....+...+++.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777776311122 246777777777777777777777777764 222455666777777777777777
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
..+++......+.+...+-..+.+=...|+-+.|-+.=..+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777766777777777777777777766665544443
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=5.7e-09 Score=101.11 Aligned_cols=240 Identities=15% Similarity=0.046 Sum_probs=195.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY- 466 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 466 (1041)
+...|..+-+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||..|-.+|.+..+++.|+.++.+-.+. .|-.+||
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l 293 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL 293 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence 34446667788899999999999999999987765 456778888999999999999999999988775 3444444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 467 IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.-..+.+-..++.++|.++|+...+..+.+++...++...|.-.++.+-|+..|+++.+.|+. +...|..+.-+|.-.+
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 456678888899999999999999999899999999999999999999999999999999875 8899999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
+++.++.-|.+....--.|+
T Consensus 373 Q~D~~L~sf~RAlstat~~~------------------------------------------------------------ 392 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPG------------------------------------------------------------ 392 (478)
T ss_pred chhhhHHHHHHHHhhccCcc------------------------------------------------------------
Confidence 99999988887665411111
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDA 706 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1041)
.-..++..+.......|++..|.+.|.-.....+.+...+|.|.-.
T Consensus 393 ----------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 393 ----------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred ----------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 0112344455555667888888888888776777788888888888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 001632 707 YAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~ 726 (1041)
-.+.|+.++|..+++.....
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88899999999998887764
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.2e-08 Score=105.16 Aligned_cols=200 Identities=19% Similarity=0.115 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHH
Q 001632 785 FAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIII 863 (1041)
Q Consensus 785 ~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 863 (1041)
.+...+.....|...|++++|+..|+++.+.. +.+...|+.+...|...|++++|...|++..+. .|+ ...|..+.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg 139 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRG 139 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34445555555555666666666666655543 334555555666666666666666666665553 333 23445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMA 943 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 943 (1041)
.++...|++++|++.|++..+. .|+..........+...++.++|...+++..... +|+...+ . ......|++.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCC
Confidence 5555556666666666555553 2222111111112233455566666654444321 2221111 1 1222233332
Q ss_pred HHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 944 EATRVYNESLAA---G--IIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 944 ~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++ +.++.+.+. . +.| ....|..+...+.+.|++++|+..|+++.+..|+|
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 22 223332211 0 001 12345555555556666666666666655555433
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.3e-06 Score=86.38 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=166.5
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
.+..|++++...+-..+.... .-....|-.-...+...++++.|..+-++.++... -+...|..-.+.+...|++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHH
Confidence 345677777766666665532 12222333333444567789999999999887622 1345555556788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH-HHHHhcC-CHHHHHHHHHHHH
Q 001632 876 EKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL-SAFSKAG-LMAEATRVYNESL 953 (1041)
Q Consensus 876 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~ 953 (1041)
.-.|...+.. -+.+...|.-|+..|...|++.||..+-+...+. ++.+..+...++ ..+..-- --++|.+++++.+
T Consensus 354 ~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9999998874 3467889999999999999999999988887764 455666666664 4443332 3489999999988
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 954 AAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 954 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
. +.|+ ......+...|...|.++.++.++++..... +|-.....|++++...+.+++|++.+...+...-
T Consensus 432 ~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 432 K--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred c--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 7 5675 4566777888999999999999999988754 4556778899999999999999999988876554
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=2.2e-07 Score=102.76 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=190.2
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT------ 743 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~------ 743 (1041)
...+...|++++|.+.++...................+.+.|+.++|..+|..++..+ |+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778999999999988666656666777888889999999999999999999874 66666655554443
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCCCHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL-DKALEMFNTARSLGLSLDEK 822 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 822 (1041)
.....+....+++++....+..+.+-.-.|.. .....+ ..+..+.......|+|+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~---------------------~~g~~F~~~~~~yl~~~l~KgvPs--- 144 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDF---------------------LEGDEFKERLDEYLRPQLRKGVPS--- 144 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhccc---------------------CCHHHHHHHHHHHHHHHHhcCCch---
Confidence 11245666777777766654433322221111 111111 13344555566777643
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----------CCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEE----GI----------KPGLI--SYNIIINVYAAAGLYNEVEKLIQAMQRDG 886 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~----------~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 886 (1041)
+++.|-..|....+.+-..+++...... |. .|... ++.-+...|-..|++++|++++++.++.
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 5666666677666666666666665433 11 12222 3345567777888888888888888875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHH-
Q 001632 887 FSPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLA- 962 (1041)
Q Consensus 887 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~- 962 (1041)
.|+ ...|..-...|-+.|++.+|.+.++...+.+ .-|...-+-.+..+.++|++++|++++......+..| |..
T Consensus 224 -tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 -TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 344 5567777788888888888888888888865 3444555556677788888888888888876554333 211
Q ss_pred ---HH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 963 ---CY--RTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 963 ---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
.| .--+.+|.+.|++..|+..|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2234577888888888888887665
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=3.1e-10 Score=81.98 Aligned_cols=47 Identities=26% Similarity=0.623 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSL 263 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 263 (1041)
|..+||++|++|++.|++++|+++|++|.+.|+.||..||+.||++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=7.9e-07 Score=87.25 Aligned_cols=319 Identities=16% Similarity=0.139 Sum_probs=235.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcc
Q 001632 667 ASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI-LVNTLTNH 745 (1041)
Q Consensus 667 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~ 745 (1041)
..+...+...|++..|..-|..+..+.|.+-.++..-...|...|+...|+.-+.+.++. +||-..-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 456677778899999999999988777777777777788899999999999999998885 566543221 23457899
Q ss_pred CCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 746 GKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 746 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
|.+++|..-|..+++..+..... ..+..+.-..++-..+...+..+...|+...|+++...+++-. +=|...|.
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 99999999999998876643221 1111111122233333444446778899999999999999864 35677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHH----
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY----LSL---- 897 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~l---- 897 (1041)
.-..+|...|++..|+.=++...+.. .-+..++--+...+...|+.+.++....+.++ +.||.... ..|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 88999999999999988887776642 22445566677778899999999999998887 56775432 111
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 001632 898 -----VQAYTEAAKYSEAEETINSMQKQGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRT 966 (1041)
Q Consensus 898 -----~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 966 (1041)
+....+.+++.++++..+...+.+ |.. ..+..+..+|...|++.+|++.+.+.++ +.|| ..++.-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 122356678888888888888754 442 2345566778888999999999999998 5665 677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA 1000 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 1000 (1041)
=..+|.-...++.|+.-|+++.+..+.|..+..-
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 7889999999999999999999988887655443
No 91
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=3.9e-10 Score=81.45 Aligned_cols=49 Identities=22% Similarity=0.620 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 001632 251 PSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFV 299 (1041)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 299 (1041)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=9.4e-08 Score=88.97 Aligned_cols=204 Identities=15% Similarity=0.047 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINV 865 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 865 (1041)
..-+...+.|...|+...|..-++++++.+ +.+..+|..+...|.+.|..+.|.+.|++..+. .|+ -...|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 333444557888888888888888888876 455667888888888888888888888888775 343 3567777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
+|..|.+++|.+.|++....- ..--..+|..++.+..++|+.+.|...|++.++.+ +......-.+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 888888888888888877641 22234567777777778888888888888888864 3344567777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 945 ATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
|.-+++.....+. +........++.--+.||...+-.+=.++....|...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888888776543 6766666666777777887777777666766666554
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.9e-07 Score=95.51 Aligned_cols=363 Identities=14% Similarity=0.077 Sum_probs=216.2
Q ss_pred HHHHHcCCHHHHHHHHHcC--CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHH
Q 001632 640 CKFIRDGMRLTFKFLMKLG--YI-LDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDV 716 (1041)
Q Consensus 640 ~~~~~~g~~~~a~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 716 (1041)
+..+..|+++.|....... +. ++...|+.-..+|.+.|++++|.+=-.+.....|.-...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4556778888888743322 22 24556666777888888888887777776666666677888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHhccCC---CCCChhhHHHHHHHHHhc----------
Q 001632 717 YLLYKEATAQGCALDAVAISILVNTLTNHGKHEQA---EIIIHNSFQDN---LDLDTVAYNTCIKAMLGA---------- 780 (1041)
Q Consensus 717 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~---~~~~~~~~~~li~~~~~~---------- 780 (1041)
+.-|.+-++.. ..+...++.+..++.......+. -.++..+.... .......|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888877753 12445556666655211000000 00000000000 000000011111100000
Q ss_pred CChhH--------------------------------------------------HHHHHHHHHHHhccCChHHHHHHHH
Q 001632 781 GKLHF--------------------------------------------------AASIYERMLVYGRGRKLDKALEMFN 810 (1041)
Q Consensus 781 g~~~~--------------------------------------------------A~~~~~~~~~~~~~~~~~~A~~~~~ 810 (1041)
.++.. |...-+......+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00000 0000000015566778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHH-------HHHHHHHcCCHHHHHHHHHHHH
Q 001632 811 TARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNI-------IINVYAAAGLYNEVEKLIQAMQ 883 (1041)
Q Consensus 811 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------l~~~~~~~g~~~~A~~~~~~m~ 883 (1041)
..++.. -+..-++....+|...|++.++........+.|.. ...-|+. +.++|.+.++++.|+..|++..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 888765 56666777888899999988888888777776542 2222333 3445666778888888888876
Q ss_pred HcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 001632 884 RDGFSPNSFTYL-------------------------SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938 (1041)
Q Consensus 884 ~~g~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 938 (1041)
.....||..+-. .-.+.+.+.|++..|...|.++++.+ |.|...|.+...+|.+
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 543444422111 11345566777888888888877765 5556677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
.|.+..|+.=++..++. -++....|.--..++.-..++++|.+.|++.++..|.+..+...+..++...
T Consensus 405 L~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 88888777777777764 2223344544455555666777888888877777777777777777776653
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=1.1e-06 Score=96.69 Aligned_cols=312 Identities=12% Similarity=-0.032 Sum_probs=182.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH
Q 001632 695 PGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGC-ALDAVAI-SILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT 772 (1041)
Q Consensus 695 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 772 (1041)
.....|..+...+...|+.+++...+.+..+... .++.... ......+...|++++|...++++.+..+... ..+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHH
Confidence 3444555566666666666666555555544321 1122111 1122234556777777777777666544322 22221
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI 852 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 852 (1041)
...+...|. ..+....+.+.+.. .....+........+...+...|++++|...+++..+...
T Consensus 83 -~~~~~~~~~---------------~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p 145 (355)
T cd05804 83 -HLGAFGLGD---------------FSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP 145 (355)
T ss_pred -hHHHHHhcc---------------cccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 112222221 12333334444433 1112233344556677888999999999999999998632
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhH
Q 001632 853 KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGF-SPNS--FTYLSLVQAYTEAAKYSEAEETINSMQKQGI-PPSCTH 928 (1041)
Q Consensus 853 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~ 928 (1041)
.+...+..+..+|...|++++|+.++++...... .++. ..|..+...+...|++++|..+++++..... .+....
T Consensus 146 -~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 146 -DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 2345677888899999999999999999887421 2333 2455778889999999999999999875321 122211
Q ss_pred H-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC--------
Q 001632 929 V-N--HLLSAFSKAGLMAEATRV---YNESLAAGI-IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES-------- 993 (1041)
Q Consensus 929 ~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 993 (1041)
. + .++..+...|....+.+. ......... ..........+.++...|+.++|...++.+......
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 304 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA 304 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH
Confidence 1 1 334444555543333332 121111100 111222235667788899999999999997663322
Q ss_pred -hHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 994 -DKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 994 -~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
...+....+.++...|++++|.+++......+
T Consensus 305 ~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 305 RDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23445556777889999999999999986554
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=6.9e-07 Score=98.89 Aligned_cols=290 Identities=15% Similarity=0.106 Sum_probs=153.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhc-----
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS-QLISLSIKH----- 336 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~----- 336 (1041)
+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ |+...|. .+..++...
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455555555555443222 22223344455555555666666666666666553 3333332 233332111
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 337 GKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENY-SKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKT 415 (1041)
Q Consensus 337 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (1041)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+++.|-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 13444555555554432 2222222221111111122 2244444455555543 2344444444444444444444
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001632 416 FAETEQL----G----------LLSDE--KTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479 (1041)
Q Consensus 416 ~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 479 (1041)
+...... + -.|.. .++.-+.+.|-..|++++|++.++...+.. +..+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4443321 0 12232 234555666777777777777777776653 22355666677777777777
Q ss_pred hHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHhcCChhhH
Q 001632 480 GSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELY--------RSVMKIYCKEGMVTDA 551 (1041)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ll~~~~~~g~~~~A 551 (1041)
.+|.+.++........|...-+..+..+.+.|++++|.+++....+.+..|-...+ .-...+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777666666666777777777777777777777665432222111 2345678888999999
Q ss_pred HHHHHHHhhC
Q 001632 552 EQFVEEMGKN 561 (1041)
Q Consensus 552 ~~~~~~m~~~ 561 (1041)
+..|..+.++
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 8888777655
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.1e-07 Score=97.79 Aligned_cols=216 Identities=15% Similarity=0.088 Sum_probs=156.8
Q ss_pred ChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHH
Q 001632 801 KLDKALEMFNTARSLG-LSL--DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVE 876 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 876 (1041)
..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+. .| +...|+.+...|...|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555565432 122 2356888888999999999999999999986 44 4578999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
..|++..+. -+.+...+..++.++...|++++|.+.++...+.+ |+..........+...++.++|++.+++....
T Consensus 119 ~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLEL-DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999999884 23456778888999999999999999999999854 55432222223345678899999999876643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVR-------ESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
..|+...+ . ......|+..++ ..++.+. +..+..+.++..++.+|...|++++|...+++..+...
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33443222 2 233345555444 3444444 23344567899999999999999999999999988775
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2e-06 Score=82.73 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHh
Q 001632 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRS-VMKIYCK 544 (1041)
Q Consensus 466 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 544 (1041)
+.+++..+.+..++.+|++++..-.+..+.+....+.|..+|....++..|-.+|+++... -|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 4556666677777888888888777777667777788888888888888888888888764 334433332 2456677
Q ss_pred cCChhhHHHHHHHHhhC
Q 001632 545 EGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 545 ~g~~~~A~~~~~~m~~~ 561 (1041)
.+.+.+|+.+...|.+.
T Consensus 91 A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN 107 (459)
T ss_pred hcccHHHHHHHHHhcCC
Confidence 88888899888887664
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=3.4e-05 Score=76.11 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 001632 665 VTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTN 744 (1041)
Q Consensus 665 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 744 (1041)
.....+..+...|+...|+.....+....+-|...+..-..+|...|.+..|+.-++...+.. .-+..++.-+-..+..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence 445556667778999999999999888888999999999999999999999988887776542 1234455555667778
Q ss_pred cCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHH
Q 001632 745 HGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAY 824 (1041)
Q Consensus 745 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 824 (1041)
.|+...++..++++++-++.-. ..|. . |+ ++.+..+.++.|
T Consensus 236 vgd~~~sL~~iRECLKldpdHK-~Cf~-~----------------YK---------klkKv~K~les~------------ 276 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHK-LCFP-F----------------YK---------KLKKVVKSLESA------------ 276 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchh-hHHH-H----------------HH---------HHHHHHHHHHHH------------
Confidence 8999999888888887654311 1111 0 00 011111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLIS---YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
......++|.++.+-.+...+.......+. +..+..++...|++.+|++.-.+.++. .+.|..++.--..+|
T Consensus 277 ----e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 277 ----EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHH
Confidence 123345667777777777666522211222 334556667777888888888877763 233466777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 001632 902 TEAAKYSEAEETINSMQKQG 921 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~ 921 (1041)
.-...++.|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 87788888888888888754
No 99
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=6.3e-07 Score=93.56 Aligned_cols=235 Identities=10% Similarity=0.046 Sum_probs=181.0
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCcccH
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAG-KTHEASLLFSEMQEEGIKPGLISY 859 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~ 859 (1041)
+++.+|...|..+ +.+.+..++|+....+++... +-+..+|+....++.+.| ++++++..++++.+...+ +...|
T Consensus 34 ~~~~~a~~~~ra~--l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW 109 (320)
T PLN02789 34 PEFREAMDYFRAV--YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIW 109 (320)
T ss_pred HHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHh
Confidence 4556666666664 467788999999999998865 345567777777777777 589999999999987433 44567
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 001632 860 NIIINVYAAAGLY--NEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS 937 (1041)
Q Consensus 860 ~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 937 (1041)
+.-...+.+.|+. ++++.+++++.+. -+-|...|.....++.+.|+++++++.++++++.+ +.+..+|+....++.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHH
Confidence 7666666666663 6789999899875 35678889999999999999999999999999976 566678888887776
Q ss_pred hc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 938 KA---GL----MAEATRVYNESLAAGIIPDLACYRTMLKGYMDH----GYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 938 ~~---g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
+. |. .++++++..++++. .+-|...|+.+...+... ++..+|...+.++....+.++.++..|+++|+
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 65 22 35788888888874 344677888888888773 45577999999988878888999999999998
Q ss_pred hcC------------------ChhHHHHHHHHhh
Q 001632 1007 YAG------------------KEHEANDILDSMN 1022 (1041)
Q Consensus 1007 ~~g------------------~~~eA~~~~~~~~ 1022 (1041)
... ..++|.++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 732 3467888888883
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=2.1e-08 Score=103.20 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=95.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH--hcC-
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS--KAG- 940 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g- 940 (1041)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...|+.++. ..|
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4455667777777766532 345555566677777777777777777777632 33 22333333322 233
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh-hHHHHHH
Q 001632 941 -LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE-HEANDIL 1018 (1041)
Q Consensus 941 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~eA~~~~ 1018 (1041)
.+.+|..+|+++.+. ..+++.+.+.++.+++..|++++|...++++.+..|.|+.++..++.+....|+. +.+.+++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 577777777776554 5567777777777777777777777777777777777777777777777777777 5566777
Q ss_pred HHhhcc
Q 001632 1019 DSMNSV 1024 (1041)
Q Consensus 1019 ~~~~~~ 1024 (1041)
.++...
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 777654
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=5.4e-06 Score=79.90 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHH
Q 001632 256 FNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQL-ISLSI 334 (1041)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~ 334 (1041)
+.+.+..+.+..+++.|++++..-.+.. +.+....+.|...|-...++..|...++++-.. .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444445555555666666555544432 224555666666666666666666666666554 4444444332 44555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 335 KHGKSDEALSLYKDMRSRGLIPSNYTCASLLS--LYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDA 412 (1041)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (1041)
+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 666666666666666432 11111111111 1234556666666666554322 333344444444566667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001632 413 QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMW 460 (1041)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 460 (1041)
.+-|+...+-+--.....||.-+ +..+.++++.|++...++.++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 66666666543333444555333 333456666666666666666654
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=6.8e-07 Score=85.52 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..+...+...|+-+....+....... .+.|......++....+.|++.+|+..+++..... ++|...|+.++-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778877777777665443 34455566667778888888888888888888764 67778888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHH
Q 001632 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILD 1019 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 1019 (1041)
|+.++|..-|.+.++. .+.++..++.|...|.-.|+++.|..++......-+.|+.+...++-+....|++++|+.+..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888888874 333677778888888888888888888888887777788888888888888888888887765
Q ss_pred Hh
Q 001632 1020 SM 1021 (1041)
Q Consensus 1020 ~~ 1021 (1041)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 53
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.00042 Score=73.19 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 802 LDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGK---THEASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 802 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++..+++...+.-..-+..+|.++.+.--..-+ .+.....+++.... .++|+ .+|..+++.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 45667777777665434455555555443222222 56667777777664 33444 457788888888888999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 878 LIQAMQRDGFSP-NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 878 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
+|.+..+.+..+ +.+.+.+++.-|+ .++.+-|..+|+--+++ +..+..-....++.+...|+-..|..+|++.+..+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999987777 7788888888555 67889999999987775 34555566788999999999999999999999887
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCChhHH
Q 001632 957 IIPD--LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK----FIMSAAVHLYRYAGKEHEA 1014 (1041)
Q Consensus 957 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~eA 1014 (1041)
+++| ...|..++.--..-|+...++++-++.....|.+. .....+++-|.-.+.+..-
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 7776 46899999888889999999999888666565221 1233345555555544433
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.0011 Score=74.78 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 770 YNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 770 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
.+.+++.+.+.++.. .+-+|+-+++...... +.|..+--.+|..|+--|-+..|.++|..+--
T Consensus 439 v~~Lid~~rktnd~~----------------~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI 501 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLT----------------DLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI 501 (932)
T ss_pred HHHHHHHHHhcCcHH----------------HHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcch
Confidence 455666665555543 2234445555555543 45666777789999999999999999998877
Q ss_pred cCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh
Q 001632 850 EGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSC 926 (1041)
Q Consensus 850 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~ 926 (1041)
+.+.-|...|. +.+.+...|++..+...+....+- +..+..----+|..-.+.|.+.+..++..-=.+. .....+
T Consensus 502 K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~ 579 (932)
T KOG2053|consen 502 KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWAC 579 (932)
T ss_pred HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 66776766654 345556778888887777776552 1112111222233345677887776654332221 111222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
.+-+..++.++..++.++-...++.|.
T Consensus 580 ~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 580 RVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 344667778888888888888888775
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=5.1e-05 Score=83.36 Aligned_cols=269 Identities=8% Similarity=-0.017 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001632 184 VAYTILLRLYGQVGKIKLAEQTFLEMLEAGC-EPDEIA-CGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLS 261 (1041)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 261 (1041)
..|..+...+...|+.+.+.+.+....+... ..+... .......+...|++++|..++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555666666777776666666544321 223221 1222334566778888888888777653 334444442 22
Q ss_pred HHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001632 262 SLHK----KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHG 337 (1041)
Q Consensus 262 ~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 337 (1041)
.+.. .+....+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 3444444444443 111122233455566677788888888888888888774 334556777778888888
Q ss_pred ChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 001632 338 KSDEALSLYKDMRSRGL-IPSN--YTCASLLSLYYKNENYSKALSLFSEMEKFKV-AADEVIY-G--LLIRIYGKLGLYE 410 (1041)
Q Consensus 338 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 410 (1041)
++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888888765432 1222 2345677778888888888888888754322 1111111 1 2223333334322
Q ss_pred HHHHH--H-HHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 411 DAQKT--F-AETEQLGL-LSDEKTYLAMAQVHLTSRNVEKALDVIELMKS 456 (1041)
Q Consensus 411 ~A~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 456 (1041)
.+.+. . ........ ............++...|+.+.|..+++.+..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22222 1 11111100 01111112455566677777777777777654
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4.5e-07 Score=95.97 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=172.4
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYN 873 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 873 (1041)
.+.+.|++.+|.-.|+.....+ |-+...|--|....+..++-..|+..+++.++. .|+ ......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3456678888888888888876 556778999998899999999999999999986 454 466777888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCC
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQ-----------AYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~ 941 (1041)
+|++.|+..+.... . |..+.. .+..........++|-++. +.+..+|+.+...|+-.|...|+
T Consensus 371 ~Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999998876421 1 111110 1122223344555555554 44445788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001632 942 MAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDS 1020 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 1020 (1041)
+++|++-|+.++.. +| |...||-|...+....+.++|+..|.++.+.-|.-..+.+.|+-.|...|-++||.+.+-.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999984 55 6789999999999999999999999999998888888999999999999999999988876
Q ss_pred hhc
Q 001632 1021 MNS 1023 (1041)
Q Consensus 1021 ~~~ 1023 (1041)
.+.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 544
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=5.6e-05 Score=94.65 Aligned_cols=340 Identities=12% Similarity=0.022 Sum_probs=195.5
Q ss_pred HHHhccCCHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CCH--HHHHHHHHH
Q 001632 671 GSYGKHQKLKEAQDVFKAATVS-CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA------LDA--VAISILVNT 741 (1041)
Q Consensus 671 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~------~~~--~~~~~l~~~ 741 (1041)
..+...|+...+...+..+... ...+..........+...|++++|...+......--. +.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3444567777777777665311 1122223344555667788999998888877543110 111 112222334
Q ss_pred HHccCCHHHHHHHHHHhccCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC
Q 001632 742 LTNHGKHEQAEIIIHNSFQDNLDLDT----VAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGL 817 (1041)
Q Consensus 742 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 817 (1041)
+...|++++|...++.........+. ...+.+...+...|+++.|...+++.. .... ..|.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al------------~~~~---~~g~ 526 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE------------QMAR---QHDV 526 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHh---hhcc
Confidence 56788999999998887664222221 233444444455555555555554432 1111 1111
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Q 001632 818 S-LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE----GIKP---GLISYNIIINVYAAAGLYNEVEKLIQAMQRD--GF 887 (1041)
Q Consensus 818 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~ 887 (1041)
. ....++..+...+...|++++|...+++..+. |... ....+..+...+...|++++|...+.+.... ..
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 0 11234556677778889999998888776552 2111 1122344556677779999998888876552 11
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 888 SPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGI-PPSCTHV-----NHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 888 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
.+. ...+..+..++...|++++|...++.+..... ......+ ...+..+...|+.+.|.+.+..........
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 121 23344456677788999999888888765210 1111111 112244556788888888877754321111
Q ss_pred CH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-----C-ChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 960 DL---ACYRTMLKGYMDHGYIEEGINLFEEVRESS-----E-SDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 960 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
.. ..+..+..++...|++++|...++++.... + ....++..++.+|...|+.++|...+.+..+..
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 113456667788889999998888866531 1 123456677888888999999988888776643
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=1.1e-06 Score=89.64 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL----ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS-- 891 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-- 891 (1041)
+.....+..+...|.+.|++++|...|+++.+. .|+. ..+..+..+|...|++++|+..++++.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 345566777778888888888888888888775 3432 355667788888888888888888887742 2111
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001632 892 -FTYLSLVQAYTEA--------AKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL 961 (1041)
Q Consensus 892 -~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 961 (1041)
.++..+..++... |++++|.+.++.+.+.. |+.. .+..+..... .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~-------~~------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR-------LA------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH-------HH-------
Confidence 2455555566554 67788888888888743 4432 2222211110 0000 00
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCC---hHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 962 ACYRTMLKGYMDHGYIEEGINLFEEVRESSES---DKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 962 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
.....+...|.+.|++++|+..++++.+..|. .+..+..++.+|.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01124566788999999999999998887554 3578889999999999999999998887654
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1.3e-06 Score=84.93 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH-HhcCC--HHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF-SKAGL--MAEA 945 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 945 (1041)
.++.++++..++...+. -+.|...|..|...|...|++++|...|++..+.+ +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555543 34455556666666666666666666666666543 33444555555543 44454 3566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
.+++++.++. .+.+...+..+...+.+.|++++|+..++++.+..|++.
T Consensus 130 ~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 6666666553 122445555555556666666666666666655555543
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=1.7e-06 Score=89.11 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred ccCCHHHHHHHHHHhhc-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001632 675 KHQKLKEAQDVFKAATV-SCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEI 753 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 753 (1041)
-.|.+..+..-.+ +.. ....+......+.+++...|+++.++ .++... ..|....+..+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666664444 221 11122334445666777777765433 333322 24555555444443333334444444
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 754 IIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK 833 (1041)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 833 (1041)
-+.+...........++.. +.+. ++...|++++|++++... .+.......+..|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~-~~A~-----------------i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQL-LAAT-----------------ILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHCCCTS---CHHHHHH-HHHH-----------------HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHH-HHHH-----------------HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 4444433332211111111 1111 233334444444433221 233344444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA----AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSE 909 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 909 (1041)
.++++.|.+.++.|.+. ..| .+...++.++.. .+.+.+|.-+|+++.+. +.++..+.+.+..++...|++++
T Consensus 144 ~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp TT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHH
Confidence 55555555555555543 112 222223332221 12355555555554433 34444555555555555555555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 001632 910 AEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM-AEATRVYNESLA 954 (1041)
Q Consensus 910 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 954 (1041)
|++++++..+.+ +.+..+..+++-+....|+. +.+.+++.++..
T Consensus 220 Ae~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 220 AEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555554432 23333444444444444544 444444444443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.2e-06 Score=80.36 Aligned_cols=125 Identities=12% Similarity=-0.011 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
.+|++.++ ..|+. +..+..++...|++++|...|+.++..+ +.+...|..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 45555555 23443 4456677788888888888888888754 456667788888888888888888888888874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
.+.+...+..+..++...|++++|+..|+++.+..|.++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 334677777788888888888888888888888888887777666665543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=9.8e-05 Score=92.49 Aligned_cols=335 Identities=12% Similarity=0.066 Sum_probs=184.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHH
Q 001632 227 TYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG--V----APT--DFTYTLVISSF 298 (1041)
Q Consensus 227 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~~~--~~~~~~li~~~ 298 (1041)
.+...|++..+..+++.+.......+..........+...|+++++..++.+....- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344566666666666554211111122222334444556677777777776654320 0 111 11222333445
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 001632 299 VKGSLLEEALKTFNEMKSTGFAPEE----VTYSQLISLSIKHGKSDEALSLYKDMRSR----GL-IPSNYTCASLLSLYY 369 (1041)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~ 369 (1041)
...|++++|...+++..+.-...+. ..++.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5677888888777776653111111 23445555666778888887777776432 11 111234455566677
Q ss_pred hcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 001632 370 KNENYSKALSLFSEMEK----FKVA--A-DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG--LLS--DEKTYLAMAQVH 438 (1041)
Q Consensus 370 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 438 (1041)
..|+++.|...+.+... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 77888887777766543 2211 1 22334455556666788888877777654421 111 123344455667
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCCHH--H-H-HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh----hHHHHHHHHHH
Q 001632 439 LTSRNVEKALDVIELMKSR--NMWLSRF--A-Y-IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDA----GSCNDMLNLYI 508 (1041)
Q Consensus 439 ~~~~~~~~A~~~~~~~~~~--~~~~~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~ 508 (1041)
...|+++.|.+.++..... ....... . . ...+..+...|+.+.|...+........... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7778888887777766432 1111110 1 1 1122344456777777777666543222111 11345666777
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 509 KLDLTEKAKGFIAHIRKD----QVDFD-EELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
..|+.++|...++..... |...+ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888776543 22222 235566667788888888888888888776
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=4.2e-06 Score=88.81 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=174.2
Q ss_pred HHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 001632 742 LTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE 821 (1041)
Q Consensus 742 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 821 (1041)
+.+.|.+.+|.-.|+..+++.+. +.-.|..|... ....++-..|+..+.++.+.+ +.|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~-------------------qaENE~E~~ai~AL~rcl~Ld-P~Nl 353 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGIT-------------------QAENENEQNAISALRRCLELD-PTNL 353 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhH-------------------hhhccchHHHHHHHHHHHhcC-CccH
Confidence 34555666666666666655543 34445555543 344556667777777777776 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-----------HHHHHcCCHHHHHHHHHHHH-HcCCCC
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII-----------NVYAAAGLYNEVEKLIQAMQ-RDGFSP 889 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~m~-~~g~~~ 889 (1041)
.+..+|.-.|...|.-.+|...|+..+...+ . |..+. ........+....++|-++. ..+..+
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999999999876521 1 11010 11122223444555555554 445457
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL-ACYRTML 968 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 968 (1041)
|......|.-.|.-.|++++|...|+.++..+ |.|...||-|+..++-..+.++|+..|+++++ +.|.- ..+-.|.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlg 505 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLG 505 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhh
Confidence 88888888888999999999999999999854 45566899999999999999999999999998 67863 3556677
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHhcCChhHHHH
Q 001632 969 KGYMDHGYIEEGINLFEEVRESSES----------DKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 969 ~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
-.|+..|.|++|..+|-.++...+. +-.++..|=.++...++.|-+.+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 8899999999999999887663322 12567777777777777664433
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0026 Score=71.85 Aligned_cols=519 Identities=14% Similarity=0.114 Sum_probs=273.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 439 LTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC--YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKA 516 (1041)
Q Consensus 439 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 516 (1041)
...+++.+|+.....+.++. |+. .|..++.+ ..+.|..++|..+++.....+..|..+...+..+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34566667776666666552 332 23333333 34667777777777766665556777777777778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhh
Q 001632 517 KGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQ 596 (1041)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 596 (1041)
..+|++..+. .|+......+..+|.+.+++..-.+.--+|-+ +++-....+-.+++........+.+....
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~------ 167 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP------ 167 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc------
Confidence 8888877654 45677777777777777766543333333322 23444555566666555444432222110
Q ss_pred hhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 001632 597 LDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKH 676 (1041)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 676 (1041)
.- ..-|...++++++. .|.-.+..-..-....+...
T Consensus 168 i~----------------l~LA~~m~~~~l~~----------------------------~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 168 IL----------------LALAEKMVQKLLEK----------------------------KGKIESEAEIILYLLILELQ 203 (932)
T ss_pred hh----------------HHHHHHHHHHHhcc----------------------------CCccchHHHHHHHHHHHHhc
Confidence 00 01122222222221 11111111122223445567
Q ss_pred CCHHHHHHHHHH--hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------
Q 001632 677 QKLKEAQDVFKA--ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT----------- 743 (1041)
Q Consensus 677 ~~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~----------- 743 (1041)
|+.++|.+++.. .....+.+...-+.-++.+...+++.+..++-.++...| +|. |...+...+
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a 279 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPA 279 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccc
Confidence 788888888844 333334555666777888888999999999988888876 332 222222111
Q ss_pred -----ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----------HHhccCChHHHHH
Q 001632 744 -----NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERML-----------VYGRGRKLDKALE 807 (1041)
Q Consensus 744 -----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~A~~ 807 (1041)
..+..+...+..++.+.....-.-..+--+..-+-.-|+.+++...|-+-. .|.-.=+.+.-..
T Consensus 280 ~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~ 359 (932)
T KOG2053|consen 280 EAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKS 359 (932)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHH
Confidence 111222222222222222111111111112222224466666555443311 3333334444444
Q ss_pred HHHHHHHCCCCCCHH----H---HHHHHHHHHhcCC-----HHHHHHHHHHHH---HcC------CCCCcc---------
Q 001632 808 MFNTARSLGLSLDEK----A---YMNLVSFYGKAGK-----THEASLLFSEMQ---EEG------IKPGLI--------- 857 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~----~---~~~l~~~~~~~g~-----~~~A~~~~~~m~---~~g------~~p~~~--------- 857 (1041)
++....... ++.. . +...+....-.|. -+.-..++++.. ++| .-|...
T Consensus 360 l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llL 437 (932)
T KOG2053|consen 360 LMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLL 437 (932)
T ss_pred HHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHH
Confidence 544443321 1111 0 1111111111221 122222232222 122 223322
Q ss_pred cHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001632 858 SYNIIINVYAAAGLYN---EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 934 (1041)
+.+.|++.|.+.++.. +|+-+++..... -+-|..+-..||..|+-.|-+..|.++|+.+.-+.+..|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 2367788888888754 566666665553 23455556678889999999999999999988776766655442 334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhccCCh-HHHHHHHHHHHHhcCC
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE---VRESSESD-KFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~g~ 1010 (1041)
.+...|++..+...+...+.- +..+..----++..-++.|.|.+-.++..- +....... ..+-....+.++..++
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 556678888888888877652 111111111123333477777766665432 22222111 2344556778888999
Q ss_pred hhHHHHHHHHhh
Q 001632 1011 EHEANDILDSMN 1022 (1041)
Q Consensus 1011 ~~eA~~~~~~~~ 1022 (1041)
.++-...+..|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 999999988887
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=4.7e-06 Score=85.14 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc---
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE---KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI--- 857 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 857 (1041)
..+...+.....+...|++++|...|+++.... +.+. ..+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 455667777778899999999999999998864 2222 46778899999999999999999999986 34332
Q ss_pred -cHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 001632 858 -SYNIIINVYAAA--------GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH 928 (1041)
Q Consensus 858 -~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 928 (1041)
.+..+..++... |+.++|++.|+++.+. .+.+......+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 355566666654 7899999999999885 2333333332221111 000 000 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGI-IP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
...++..|.+.|++++|+..++++++... .| ....+..++.++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23577788999999999999999987521 12 346788889999999999999999988776543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2e-06 Score=93.61 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 771 NTCIKAMLGAGKLHFAASIYERML-------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLL 843 (1041)
Q Consensus 771 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 843 (1041)
..+...+.+.|-...|..++++.- -|...|+..+|.++..+..+. +|+...|..+.+......-+++|.++
T Consensus 402 ~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 344555556666666666666532 233444444444444444442 35555555555554444445555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001632 844 FSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP 923 (1041)
Q Consensus 844 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 923 (1041)
++..-.+ .-..+.......++++++.+.|+.-.+. .+.-..+|-.+..+..+.+++..|.+.|...+... |
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P 550 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P 550 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence 5443221 0000111112245555555555554443 22334445555555555555555555555555532 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 924 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
.+...||++..+|.+.|+-.+|...+++.++.. .-+...|-..+-...+.|.+++|+..++++.
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 223355555555555555555555555555543 2233334344444445555555555555544
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=2.5e-05 Score=91.06 Aligned_cols=181 Identities=10% Similarity=0.083 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (1041)
.-+...++|+++.+. .....+|..|...|.+.+++++|.++|+.|.++ +.-....|..++..+.+.++-+.|..+++
T Consensus 1512 ~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred cHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 344455566666653 233567889999999999999999999999987 44456789999999999999999999999
Q ss_pred HHHHcCCCCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 881 AMQRDGFSPN--SF-TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 881 ~m~~~g~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
+.++. -|. .. .....++.-.+.|+.+.+..+|+..+... |.....|+.+++.=.++|+.+.+..+|++.+..++
T Consensus 1589 rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1589 RALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 98884 344 22 23344555678999999999999999752 55567899999999999999999999999999888
Q ss_pred CCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 958 IPDL--ACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 958 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.|-. ..|.-.+..--.+|+-+.+..+=.++
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 7743 34444444444556644444433333
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=8.8e-06 Score=94.60 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=170.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHH
Q 001632 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-----LISYNIIINVYAAAGLYNEVEKLIQAM 882 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 882 (1041)
-|+++.... |.+...|-.+|....+.++.++|++++++.+.. +.+. .-.|.++++.....|.-+...++|++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444432 344567889999999999999999999999875 3221 235777788777888888889999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 001632 883 QRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DL 961 (1041)
Q Consensus 883 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 961 (1041)
.+. ......|..|...|.+.+++++|.++|+.|.++ +......|..+++.+.++.+-++|.++++++++. .+- ..
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEH 1599 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhh
Confidence 875 223345888999999999999999999999986 3567789999999999999999999999999885 332 12
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCcc
Q 001632 962 -ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 962 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 1027 (1041)
....-.+..-+++|+-+.+..+|+-.....|.-...|+..++.=.+.|..+.++.+|+++.+.+++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 233444556678999999999999988889988899999999999999999999999999988875
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=9.3e-06 Score=93.77 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACY 964 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 964 (1041)
.+.+...+..|..+..+.|++++|+..++.+.+. .|+. .....++.++.+.+++++|...+++.+.. .| +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 3444555555555555666666666666666653 2433 24445555566666666666666665552 33 33344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
..+..++.+.|++++|+.+|+++....|.++.++..+++++...|+.++|...+++..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555566666666666665555555555666666666666666666666655543
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0008 Score=71.21 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 001632 872 YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA---AKYSEAEETINSMQKQ-GIPPSCTHVNHLLSAFSKAGLMAEATR 947 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 947 (1041)
.+++..+++..++.-..-+..+|..+..--... ...+..-.++++++.. ...|+ .+|..++..-.+..=++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 345555565555432222334444433211111 1355666777777753 23343 456777777777777889999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 948 VYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 948 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
+|.++.+.+..+ +..++.+++.-|+ .+|.+-|..+|+--....++++......++.+.+.|+-..|..+|+++...++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999998876665 5666777766554 56789999999998888899998888889999999999999999999998877
Q ss_pred cch
Q 001632 1027 PFM 1029 (1041)
Q Consensus 1027 ~~~ 1029 (1041)
+..
T Consensus 467 ~~~ 469 (656)
T KOG1914|consen 467 SAD 469 (656)
T ss_pred Chh
Confidence 633
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=2.1e-06 Score=78.77 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=96.7
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+.++++.++. .|+. +..++..+...|++++|...|+.++.. -+.+...|..+..++...|++++|+..|+++.+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567777763 4653 567889999999999999999999985 3447888999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 991 SESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 991 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
.|.++..+..++.++...|++++|.+.+++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999877544
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.9e-05 Score=76.75 Aligned_cols=120 Identities=7% Similarity=0.028 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 001632 904 AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY-MDHGY--IEEG 980 (1041)
Q Consensus 904 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 980 (1041)
.++.+++...++..++.+ +.+...|..|+..|...|++++|+..|+++++. .+.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555555443 344445555555555555555555555555552 122344444444432 34444 3555
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
..+++++.+..|.++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555555555555555555555555555555555555554443
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00011 Score=69.97 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=151.2
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHH-HHHHHHcCCH
Q 001632 799 GRKLDKALEMFNTARS---LG-LSLDEK-AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNII-INVYAAAGLY 872 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~ 872 (1041)
..+.++..+++..+.. .| ..++.- +|..++-+....|+.+.|...++++.++ + |...-...| ..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3455666666666543 23 445554 4666677777889999999999999887 3 555333333 3345678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 873 NEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNES 952 (1041)
Q Consensus 873 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 952 (1041)
++|+++|+.+++.. +.|.+++.--+.+.-..|+.-+|++.+..-.+. +..|...|..|.+.|...|++++|.--++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999874 677888887777778889989999999998887 6789999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCChHHHHHH
Q 001632 953 LAAGIIPDLACYRTMLKGYMDHG---YIEEGINLFEEVRESSESDKFIMSA 1000 (1041)
Q Consensus 953 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 1000 (1041)
+-. -|.++..+..+...++-.| +++-|.++|+++.+..+.+...+.-
T Consensus 181 ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 873 3447778888888766544 6888999999999988866655443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=5.2e-05 Score=88.22 Aligned_cols=240 Identities=9% Similarity=0.100 Sum_probs=147.1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHH
Q 001632 693 CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVA-ISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYN 771 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 771 (1041)
.+.+...+..|+..|...+++++|.++.+...+. .|+... |..+...+...++.+++..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------------ 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI------------ 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh------------
Confidence 4566778888888888889999999988877765 455443 33333345555555544333 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001632 772 TCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEG 851 (1041)
Q Consensus 772 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 851 (1041)
+ .+....++.-...++..+... .-+...+..|..+|-+.|+.++|..+++++++..
T Consensus 91 ---~-------------------~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 91 ---D-------------------SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred ---h-------------------hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 1 122233443333344444443 3455577778888888888888888888888864
Q ss_pred CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHH
Q 001632 852 IKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HVN 930 (1041)
Q Consensus 852 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 930 (1041)
. -|....|.++-.|+.. +.++|++++.+.... |...+++.++.++++++.+.. |+.. .+.
T Consensus 147 ~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~ 207 (906)
T PRK14720 147 R-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFL 207 (906)
T ss_pred c-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHH
Confidence 2 2556777788888877 888888888777653 566667888888888888753 3322 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.+.......-...++ ..++-.+..-|...+++++++.+++.+.+..+.|..+...++.+|.
T Consensus 208 ~i~~ki~~~~~~~~~---------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 RIERKVLGHREFTRL---------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhccchh---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222221111011111 1222223344455667778888888877777777777777777776
No 125
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=3.1e-05 Score=81.03 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-
Q 001632 831 YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAG-LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKY- 907 (1041)
Q Consensus 831 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~- 907 (1041)
+...++.++|+.+..++++. .|+. ..|+.-..++...| ++++++..++++.+. .+.+..+|+....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCchh
Confidence 44567889999999999986 4554 45666666677777 689999999999886 355666788777777777763
Q ss_pred -HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHH
Q 001632 908 -SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH---GY----IEE 979 (1041)
Q Consensus 908 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~ 979 (1041)
++++.+++.+++.+ +.+..+|+....++...|++++|++.++++++.+ +.+..+|+.....+.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 77899999999865 5677899999999999999999999999999864 33666777666655544 22 357
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHh----cCChhHHHHHHHHhhccC
Q 001632 980 GINLFEEVRESSESDKFIMSAAVHLYRY----AGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 980 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 1025 (1041)
++.+..+++...|.|..++..+..+|.. .++..+|.++..+..+.+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 8888889999999999999999999988 355677888888876644
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.7e-05 Score=72.37 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=48.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA----GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 976 (1041)
+.+..+++-|.+.++.|.+- .+..+.+.|+.+|.+. +.+.+|.-+|++|-++ .+|++.+.+.++..++..|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 34444444444444444441 2223344444433321 2344444455554432 44444444444444444455
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh
Q 001632 977 IEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 977 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 1011 (1041)
+++|..+++.+..+.+.++.++..++.+-.+.|+-
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 55555555554444444444444444444444443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=8.5e-05 Score=77.85 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=84.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001632 830 FYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 830 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~ 907 (1041)
.+...|++++|+..++.++.. .|+...| ......+.+.|+.++|.+.++++... .|+ ......+.++|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 344556666666666666654 3444333 34455666666666666666666663 343 44455566666666666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.+|+.+++...... +.|+..|..|..+|...|+..+|..-+.+.. .-.|++++|+..+..+
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHHHH
Confidence 66666666666543 5555666666666666666666666655542 2456666666666666
Q ss_pred HhccCCh
Q 001632 988 RESSESD 994 (1041)
Q Consensus 988 ~~~~~~~ 994 (1041)
.+....+
T Consensus 452 ~~~~~~~ 458 (484)
T COG4783 452 SQQVKLG 458 (484)
T ss_pred HHhccCC
Confidence 6554443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.9e-05 Score=71.21 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 834 AGKTHEASLLFSEMQEE---G-IKPGLI-SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 908 (1041)
..+.++..+++.++... | ..++.. .|-.++-+....|..+.|...++++... ++-+...-..-.--+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34677888888877653 4 455543 3445566677889999999999999886 5333333222233356789999
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
+|+++|+.+++.+ |.|.+++.--+-+.-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.--++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999976 666677777777777889888999999999986 77899999999999999999999999999998
Q ss_pred hccCChHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcc
Q 001632 989 ESSESDKFIMSAAVHLYRYAG---KEHEANDILDSMNSV 1024 (1041)
Q Consensus 989 ~~~~~~~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~ 1024 (1041)
-..|-++..+..++++++-.| +.+-|.+.+.+..+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888999999999999977666 556677777666553
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.6e-07 Score=58.73 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001632 283 GVAPTDFTYTLVISSFVKGSLLEEALKTFNEM 314 (1041)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 314 (1041)
|+.||..||+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=4.7e-05 Score=73.25 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
|..+ ..+-..+.-.|+-+.+..+..+.... ..-|....+.++....+.|++.+|+..|.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 4444 66777888889988888888876543 1224445566889999999999999999999885 6889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 979 (1041)
+|.+.|++++|..-|.+..+.. +-++..+++|+..|.-.|+.+.|..++...... ..-|..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999963 456678999999999999999999999998875 23378888888888899999999
Q ss_pred HHHHHHHHHh
Q 001632 980 GINLFEEVRE 989 (1041)
Q Consensus 980 A~~~~~~~~~ 989 (1041)
|..+..+-+.
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998877443
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=5.4e-07 Score=57.94 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 816 GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEM 847 (1041)
Q Consensus 816 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 847 (1041)
|+.||..+||.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=3.7e-05 Score=84.04 Aligned_cols=213 Identities=10% Similarity=0.055 Sum_probs=142.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 658 GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI 737 (1041)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 737 (1041)
+++|--..-..+.+.+...|-..+|..+|+++. .|...+.+|+..|+..+|..+..+-.++ +||+..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 333333444444555555555555555555432 3444555555555555555555554442 344444444
Q ss_pred HHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH---------HHhccCChHHHHHH
Q 001632 738 LVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERML---------VYGRGRKLDKALEM 808 (1041)
Q Consensus 738 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~A~~~ 808 (1041)
+.+... ...-+++|.++++... ...+.++++++.+.
T Consensus 463 LGDv~~-----------------------------------d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 463 LGDVLH-----------------------------------DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKH 507 (777)
T ss_pred hhhhcc-----------------------------------ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHH
Confidence 444443 3334444444443322 12346788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 001632 809 FNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGF 887 (1041)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 887 (1041)
|+.-.+.. +....+|-.+..+..+.++++.|.+.|.....- .||. ..||.+..+|.+.|+-.+|...+++..+.+
T Consensus 508 le~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn- 583 (777)
T KOG1128|consen 508 LERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN- 583 (777)
T ss_pred HHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 88887765 566778888888888999999999999988875 5655 789999999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 888 SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 888 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
..+...|...+......|.+++|.+.+.++.+
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34444566666667889999999999999886
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=8e-05 Score=78.05 Aligned_cols=143 Identities=23% Similarity=0.164 Sum_probs=118.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcC
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS-CTHVNHLLSAFSKAG 940 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 940 (1041)
..-.+...|.+++|++.++.+... .+.|..-.....+.+.+.++..+|.+.++.++.. .|+ ....-+++.+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 344456789999999999999886 5667777778888999999999999999999996 365 567788999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001632 941 LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDS 1020 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 1020 (1041)
+..+|+.+++..... .+-|+..|..|..+|...|+..+|.... +..|...|++++|...+.+
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 999999999998875 5668999999999999999988776654 4455667888888888777
Q ss_pred hhccC
Q 001632 1021 MNSVR 1025 (1041)
Q Consensus 1021 ~~~~~ 1025 (1041)
.++..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76643
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=3.4e-05 Score=89.72 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLIS-YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN------- 890 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------- 890 (1041)
.+...+..|+..|...+++++|.++.+...+. .|+... |-.+...+.+.+++.++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 45567888888888889999999998877765 455533 33444466677776666555 33332 2222
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001632 891 ------------SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGII 958 (1041)
Q Consensus 891 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 958 (1041)
...+..|..+|.+.|+.++|..+|+++++.+ +.|..+.|.++..|... +.++|++++.++++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3677778889999999999999999999987 67788999999999999 999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH--------------------HHHHHHHHHHhcCChhHHHHHH
Q 001632 959 PDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF--------------------IMSAAVHLYRYAGKEHEANDIL 1018 (1041)
Q Consensus 959 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~g~~~eA~~~~ 1018 (1041)
+...+++.++..+++++.+..+.|.. .+..+...|....+|+++.+++
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44555666666666666665555432 3344446777888999999999
Q ss_pred HHhhccCc
Q 001632 1019 DSMNSVRI 1026 (1041)
Q Consensus 1019 ~~~~~~~~ 1026 (1041)
+.+++..-
T Consensus 247 K~iL~~~~ 254 (906)
T PRK14720 247 KKILEHDN 254 (906)
T ss_pred HHHHhcCC
Confidence 99987654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=8.5e-06 Score=74.75 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 878 LIQAMQRDGFSP-NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 878 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
+|++.... .| +......+...+...|++++|...++.+.+.+ +.+...+..++.+|...|++++|..++++.++.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44555542 33 33345556666677777777777777777653 445566777777777777777777777777664
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
.+.+...+..+...|...|++++|+..++++.+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 2334556666666777777777777777777776665543
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=7.9e-05 Score=86.24 Aligned_cols=131 Identities=9% Similarity=0.084 Sum_probs=70.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001632 856 LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934 (1041)
Q Consensus 856 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 934 (1041)
...+-.|.....+.|.+++|+.+++...+ +.|| ......++.++.+.+++++|+..+++..+.+ +.+......++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 44455555555556666666666665555 2333 2334455555556666666666666655543 233344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
++.+.|++++|+.+|++++.. .+-+..++..+..++...|+.++|...|+++.+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666665542 2223455555555555566666666666665543
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=3.4e-05 Score=70.67 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...++...+.+ +.+...+..++.+|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 34444555555555555555555443 23344445555555555555555555555555532 33344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 001632 940 GLMAEATRVYNESLA 954 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~ 954 (1041)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00079 Score=64.80 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 001632 366 SLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLT----S 441 (1041)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 441 (1041)
..|+..+++++|++...... +......-+..+.+..+++-|.+.++.|.+.. +..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34556666666666554411 23333333444555566666666666666532 44455555555543 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCC
Q 001632 442 RNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDL 512 (1041)
Q Consensus 442 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (1041)
+....|..+|++|.++ ..|+..+.+....++...|++++|+.+++..+.....+..+...++.+-...|.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 3455666666666554 356666666666666666666666666666666655555555555554444444
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=9.9e-05 Score=68.19 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTML 968 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 968 (1041)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.++..+...|++++|...|+..++....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 4788888888888888753 333 12344566788888999999999999887642222 23445567
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 969 KGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 969 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
..+...|++++|+..++.+. ..+..+......+++|.+.|++++|...+++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888999999999987743 34445677888899999999999999888763
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=6.4e-05 Score=80.13 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
+|+..+...++++.|+++++++.+.+ |+ ....++..+...++-.+|++++++.++. .+.|...+...+.-|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444455566666666666666643 43 2334566666666666777777776653 3335555555555666777
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.|+.+++++.+..|.+...+..|+.+|...|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777777777777777777777777776666554
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=5.6e-05 Score=74.16 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=65.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 977 (1041)
+-+.+.++|.+|+..|.++++.. |.|.+.|.....+|++.|.++.|++-++..+. +.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 33556666666666666666643 34445556666666666666666666666665 3332 44666666666666666
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRYAG 1009 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 1009 (1041)
++|++.|+++.+..|.+...-..|-.+-.+.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 66666666666666666655555544444333
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.10 E-value=5.2e-05 Score=67.90 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
.....++..+...|++++|+++|+-+.. +.| +...|..|...+-..|++++|+..|+++....|.|+..+..++.+|
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556666666777777777766655 233 4555566666666667777777777776666666677777777777
Q ss_pred HhcCChhHHHHHHHHhhc
Q 001632 1006 RYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~~~ 1023 (1041)
...|+.++|.+-|+...+
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777766665544
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00017 Score=66.62 Aligned_cols=114 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGL----ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~ 907 (1041)
.++...+...++.+.+. .|+. ...-.+...+...|++++|...|++.......++ ......|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555554 1222 1122233445555666666666666555431111 11233344555556666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
++|+..++..... ......+..++++|...|++++|...|++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665443221 12233444555566666666666665554
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=2.3e-05 Score=64.31 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHH
Q 001632 939 AGLMAEATRVYNESLAAGII-PDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDI 1017 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 1017 (1041)
.|++++|+.+++++++.... ++...+..+...|.+.|++++|+.++++ .+..+.+......++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57778888888887764221 1344555577778888888888888877 444555666666678888888888888887
Q ss_pred HHH
Q 001632 1018 LDS 1020 (1041)
Q Consensus 1018 ~~~ 1020 (1041)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.91 E-value=0.00028 Score=62.87 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS----CTHVNHLLSAFSKAGLMAEATRVYNESLAAGII--PDLACYRT 966 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 966 (1041)
++..++..+.+.|++++|.+.++.+.+.. |+ ...+..++.++.+.|++++|++.++++...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34455666667777777777777776642 22 234556677777777777777777776653111 11345556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+..++.+.|++++|+..++++.+..|.+..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 66667777777777777777777666665443
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00037 Score=74.39 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT 902 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 902 (1041)
...+|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|++++++..+. .+-|...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3445677777789999999999999987 355 4456888888899999999999999875 4556666777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 903 EAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 903 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
..++++.|+++.+++.+. .|+. .+|..|+.+|...|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999995 4554 599999999999999999999888754
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0015 Score=66.82 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=108.1
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001632 819 LDEKAYMNL-VSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINV--YAAAGLYNEVEKLIQAMQRDGFSPNSFTYL 895 (1041)
Q Consensus 819 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 895 (1041)
|....|..| ..++.-.|++++|.++--...+.. + .-.+..++++ +--.++.+.|...|++.+. ..||...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHH
Confidence 333444433 455667788888888877776641 1 1223333433 3356788889998888876 346644332
Q ss_pred HH-------------HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 896 SL-------------VQAYTEAAKYSEAEETINSMQKQG---IPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 896 ~l-------------~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
.. .+-..+.|++.+|.+.|.+.+..+ ..|+...|........+.|+.++|+.-+++.++ +
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--i-- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--I-- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--c--
Confidence 22 334567899999999999999732 334445677778888899999999999999876 2
Q ss_pred CHH-HHHHHHH--HHHhcCChHHHHHHHHHHHhc
Q 001632 960 DLA-CYRTMLK--GYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 960 ~~~-~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
|+. +.-.+.+ ++...++|++|++.++++.+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 433 2333333 455678999999999997664
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00015 Score=61.62 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
+..++..+...|++++|+..++++++. .+.+...+..+...+...|++++|+..++++....+.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344555555666666666666666553 2223344555555566666666666666666655555555666666666666
Q ss_pred CChhHHHHHHHHhh
Q 001632 1009 GKEHEANDILDSMN 1022 (1041)
Q Consensus 1009 g~~~eA~~~~~~~~ 1022 (1041)
|++++|...+++..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666554
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0016 Score=68.05 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH-HHHH
Q 001632 900 AYTEA-AKYSEAEETINSMQKQ----GIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-----LA-CYRT 966 (1041)
Q Consensus 900 ~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~-~~~~ 966 (1041)
.|... |++++|.+.|++..+. + .+. ..++..++.++.+.|++++|+++|++........+ .. .+-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666665541 1 111 12344555666666666666666666554321111 10 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHh--cCChhHHHHHHHHh
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSES-----DKFIMSAAVHLYRY--AGKEHEANDILDSM 1021 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g~~~eA~~~~~~~ 1021 (1041)
.+-.+...||...|...+++.....|. .......|+.++.. ...+.+|+.-++++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 122333456666666666665543321 12344445555543 22344444444433
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00039 Score=74.97 Aligned_cols=108 Identities=11% Similarity=-0.020 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
...+...|++++|+..|+++++.+ +.+...|..++.+|...|++++|+..++++++. .+.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCH
Confidence 445667788888888888888754 445567777788888888888888888888774 223566777777788888888
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
++|+..|+++.+..|.++.+...+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888777777766666555433
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00039 Score=61.95 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh---HHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD----LACYRTMLKGYMDHGYIEEGINLFEEVRESSESD---KFIMS 999 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 999 (1041)
.++..++..+...|++++|++.++++++. .|+ ...+..+...+.+.|++++|+..++.+....|.+ +.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 35677888899999999999999999874 232 3466678889999999999999999988866654 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 1000 AAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 1000 ~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
.++.++.+.|++++|.+.++++.+...
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999987643
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00044 Score=58.64 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
.++..+...|++++|...++.+.+.. +.+...+..++.++...|++++|++.+++..+. .+.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHH
Confidence 34444555555566665555555532 222344555555555556666666666655543 1223344555555555566
Q ss_pred ChHHHHHHHHHHHh
Q 001632 976 YIEEGINLFEEVRE 989 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~ 989 (1041)
++++|...+.++.+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666555544
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.72 E-value=0.00071 Score=58.73 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD----LACYRTMLKGY 971 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 971 (1041)
..++...|+.++|+.+|++..+.|+... ...+..+...|...|++++|+.++++.... . |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-F-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-CCccccHHHHHHHHHHH
Confidence 4455666666666666666666654433 224555666666666666666666666553 1 22 11122223345
Q ss_pred HhcCChHHHHHHHHHH
Q 001632 972 MDHGYIEEGINLFEEV 987 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~ 987 (1041)
...|+.++|+..+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5666666666666553
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.72 E-value=6.2e-05 Score=49.44 Aligned_cols=33 Identities=45% Similarity=0.651 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG 855 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 855 (1041)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.70 E-value=7.5e-05 Score=49.02 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN 890 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 890 (1041)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0016 Score=62.20 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSA 935 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 935 (1041)
.+..+...|...|++++|+..|++..+.+..+. ...+..++..|.+.|++++|...+++..+.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345555566666666666666666655321111 2345555666666666666666666666532 2234455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
|...|+...+..-++..+. .+++|++.++++....|.+ +..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666655554443333321 1567777777776666655 3334444444443
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.05 Score=59.70 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001632 390 AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-GLLS--------DEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMW 460 (1041)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 460 (1041)
.|....|..|...-...-.++.|+..|-+..+- |++. +...-.+-|.+ --|++++|.+++-++-.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 466777887777766666777777776554431 2210 00011111111 13666777777666654432
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--C---ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 461 LSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL--P---DAGSCNDMLNLYIKLDLTEKAKGFIA 521 (1041)
Q Consensus 461 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (1041)
.+..+.+.||+-.+.++++. .|. . -...|+.+...+.....+++|.+.|.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655555431 111 1 12344555555554445555544443
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00077 Score=55.73 Aligned_cols=78 Identities=21% Similarity=0.439 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHhhCCCCCCHHHHH
Q 001632 222 GTMLCTYARWGNHKAMLTFYSAVKERGI-VPSTAVFNFMLSSLHKKS--------YHRKVIDLWRQMMDKGVAPTDFTYT 292 (1041)
Q Consensus 222 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~ 292 (1041)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|++|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555555777777777777777777 677777777777666432 2334556666666666666666666
Q ss_pred HHHHHHH
Q 001632 293 LVISSFV 299 (1041)
Q Consensus 293 ~li~~~~ 299 (1041)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6666554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0012 Score=63.22 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKG 970 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 970 (1041)
.+..+...+...|++++|...+++.++.+-.+. ...+..++.++.+.|++++|+..++++++. .+.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 455555566666666666666666665321111 235566666666666666666666666653 12234445555555
Q ss_pred HHhcCChHHHHHHH
Q 001632 971 YMDHGYIEEGINLF 984 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~ 984 (1041)
+...|+...+...+
T Consensus 116 ~~~~g~~~~a~~~~ 129 (172)
T PRK02603 116 YHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHcCChHhHhhCH
Confidence 55555444444333
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.60 E-value=9.6e-05 Score=48.07 Aligned_cols=32 Identities=41% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGCEP 216 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 216 (1041)
+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00067 Score=73.11 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
..+..+...|++++|++.|+++++. .+.+...|..+..+|...|++++|+..++++.+..|.++..+..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456777899999999999999985 334678888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccC
Q 001632 1011 EHEANDILDSMNSVR 1025 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~~~ 1025 (1041)
+++|...+++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987654
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.023 Score=59.34 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 703 MIDAYAKCGKAEDVYLLYKEATAQGCALD-----AVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 703 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
....|...|++++|.+.|.+...-....+ ...|......+ +..++++|+..+.+ .+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HHHHH
Confidence 34566667777777777776643210000 01112212222 22244444444333 34455
Q ss_pred HhcCChhHHHHHHHHHH-HHhcc-CChHHHHHHHHHHH
Q 001632 778 LGAGKLHFAASIYERML-VYGRG-RKLDKALEMFNTAR 813 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~-~~~~~-~~~~~A~~~~~~~~ 813 (1041)
...|++..|...+.++. +|... |++++|++.|+++.
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666666555555544 44444 55555555555544
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0019 Score=64.23 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-CHH
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG---LMAEATRVYNESLAAGIIP-DLA 962 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 962 (1041)
.+-|...|..|..+|...|+++.|...|....+.. +++...+..++.++.... +..++.+++++++.. .| |..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 35566666666666666666666666666666642 344555556665554432 346666666666653 33 444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
....|...+...|++.+|...++.+.+..|+|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 445555566666666666666666666666553
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0014 Score=62.47 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP--SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTML 968 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 968 (1041)
...+..++..+...|++++|+..+++.+.....+ ...++..++.+|...|++++|+..+++.++. .+.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHH
Confidence 3445566666777788888888888777642111 1236777778888888888888888887763 222344555555
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 001632 969 KGYM-------DHGYIEEGINLFEE 986 (1041)
Q Consensus 969 ~~~~-------~~g~~~~A~~~~~~ 986 (1041)
..+. ..|++++|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66776655444444
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00037 Score=54.58 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-ChhHHHHHHHHhhc
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG-KEHEANDILDSMNS 1023 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~ 1023 (1041)
++.+|..+...+...|++++|+..|+++.+..|.++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777777777777777777777 57777777766543
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00035 Score=53.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
...+.+.|++++|+..|+++.+..|.++.++..++.++...|++++|...++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555543
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.53 E-value=0.00016 Score=46.94 Aligned_cols=31 Identities=42% Similarity=0.648 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0034 Score=56.51 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD 973 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 973 (1041)
.-.+...+...|++++|.++|+.+...+ +-+...|..|+-++-..|++++|+..|..+.... +.|+..+-.+...+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344445566777777777777776643 3334456667777777777777777777766642 2355566666666677
Q ss_pred cCChHHHHHHHHHHHhc
Q 001632 974 HGYIEEGINLFEEVRES 990 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~ 990 (1041)
.|+.+.|..-|+.+...
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777765553
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0012 Score=70.84 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 001632 250 VPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDK--GVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS 327 (1041)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 327 (1041)
+.+......+++.+....+++.+..++-..... ....-..|..++++.|.+.|..+.+..++..=...|+.||.+++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555555555555556666655555443 111222344566666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001632 328 QLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYK 370 (1041)
Q Consensus 328 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 370 (1041)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544444555554544444
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.00044 Score=53.35 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++..+...|++++|++.|+++++.. +-+...+..+..++...|++++|+.+|+++.+..|.|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3445555556666666666655531 2234455555555555566666666666555555544
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.018 Score=52.27 Aligned_cols=138 Identities=16% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHH
Q 001632 853 KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHV 929 (1041)
Q Consensus 853 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 929 (1041)
-|.+.....|.+++...|++.+|..+|++...--+..|......+.++....+++..|...++.+-+.+ |+ +...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 566666667888888899999999999888775566788888888888888889999999998888843 32 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
-.+.+.|...|...+|+.-|+..+. +.|++.........+.+.|+..+|..-+..+.+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 5567888888888889888888887 46666544445556677887777777666655543333
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.00088 Score=66.05 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
.-+.+.+++.+|+..|.++++. .+-|++.|..-..+|.+.|.++.|++-.+.++...|..+.+|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4557889999999999999985 344788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCc
Q 001632 1014 ANDILDSMNSVRI 1026 (1041)
Q Consensus 1014 A~~~~~~~~~~~~ 1026 (1041)
|.+.+++.++..-
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999999877554
No 173
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0047 Score=63.42 Aligned_cols=278 Identities=17% Similarity=0.071 Sum_probs=177.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001632 702 SMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAG 781 (1041)
Q Consensus 702 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 781 (1041)
.....+.+..++.+|+..+...++..+. +..-|.--...+...|++++|..-.+.-++....... +..+-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--------~~~r~~ 124 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--------GQLREG 124 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--------cccchh
Confidence 3567788888899999999998887432 3445555566677777777776555444332211000 000000
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCcccHH
Q 001632 782 KLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-KPGLISYN 860 (1041)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~ 860 (1041)
+ .+...++..+|.+.++ |...| ....|...++....... +|...+|-
T Consensus 125 ~------------c~~a~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~ 172 (486)
T KOG0550|consen 125 Q------------CHLALSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAK 172 (486)
T ss_pred h------------hhhhhHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHH
Confidence 0 1122223333333332 01011 12233333343333222 24445555
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------------
Q 001632 861 II-INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT------------ 927 (1041)
Q Consensus 861 ~l-~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------ 927 (1041)
.+ ..++.-.|++++|.+.--..++. -..+......-..++.-.++.+.|...|++.+..+ |+..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKL 249 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHH
Confidence 44 34567789999999888877764 23333333333445667889999999999999854 6543
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHH
Q 001632 928 -HVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-----DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAA 1001 (1041)
Q Consensus 928 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 1001 (1041)
.+..-+.-..+.|++.+|.+.|.+.+. +.| +...|........+.|+.++|+.--+.+.+..+.-...+..-
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 233445667789999999999999986 444 355666666777899999999999999988777767778888
Q ss_pred HHHHHhcCChhHHHHHHHHhhccC
Q 001632 1002 VHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 1002 ~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
+.++...++|++|++-+++..+..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999998876643
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00025 Score=58.15 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 001632 904 AAKYSEAEETINSMQKQGI-PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 904 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 981 (1041)
.|++++|+.+++++.+... .++...+..++.+|.+.|++++|++++++ .+ ..+. ..+.-.++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4667777777777776431 01334455567777777777777777766 22 2222 233334456677777777777
Q ss_pred HHHHH
Q 001632 982 NLFEE 986 (1041)
Q Consensus 982 ~~~~~ 986 (1041)
..+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.045 Score=55.25 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChH---HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDK---FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+..-|.+.|.+..|+.-++.+.+..|..+ .++..++..|.+.|..++|.+....+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45568889999999999999998777654 6677788889999999999988876643
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00056 Score=53.38 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
..|++++|++.|+++++. .+.+...+..++..|.+.|++++|..+++++....|.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 344455555555554442 12234444444445555555555555555544444444333
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0034 Score=65.20 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA-YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSA 935 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 935 (1041)
.+|..+++...+.+..+.|.++|++..+.+ ......|...... |...++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357888899999999999999999998642 2334445444444 33356777799999999986 56777888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDL---ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
+.+.|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+....+.+++.+..+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999875 44433 4888888888889999999999999988777754
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.029 Score=51.04 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG---FSPNSFTY 894 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 894 (1041)
.|++..-..|..++...|+..+|...|++...--+--|......+.++....++...|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666667888888999999999999888764334466677778888888899999999998887742 2333 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
..+...|...|++++|+..|+..... -|+...-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667788889999999999988884 57777777777888888888777776666544
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0021 Score=61.24 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 001632 907 YSEAEETINSMQK-QGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 907 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
+..+...+..+.+ .+..-....+..++..+...|++++|+..+++.+.....+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444445555532 2211223467788888999999999999999998742222 235788888999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHH-------hcCChhHHHHHHHHh
Q 001632 984 FEEVRESSESDKFIMSAAVHLYR-------YAGKEHEANDILDSM 1021 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~eA~~~~~~~ 1021 (1041)
++++....|.....+..++.+|. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999888888888888888888 888888666655543
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00038 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
+.+.|++++|+..|+++.+..|.+..+...++.+|.+.|++++|.++++++....-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999999999999999999999999876543
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.032 Score=56.28 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 001632 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAY---MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNII 862 (1041)
Q Consensus 786 A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 862 (1041)
+...|.....+.+.|++++|++.|+.+...... +.... -.++.+|-+.+++++|...+++.++....-....+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444555555566778888888888888875422 23332 35677888999999999999999886222112334444
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 863 INVYAA--AG---------------L---YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGI 922 (1041)
Q Consensus 863 ~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 922 (1041)
..+.+. .+ | ..+|++.|+++++. |-...-..+|...+..+.+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH--
Confidence 444331 11 1 23444555555543 22233344554444444331
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 923 PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP---DLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 923 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
- ...--.++..|.+.|.+..|+.-++.+++. .+- .....-.++.+|...|..++|......+.
T Consensus 174 -l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 012236678899999999999999999874 332 34456677789999999999988876653
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.38 E-value=0.002 Score=69.19 Aligned_cols=119 Identities=11% Similarity=0.148 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKER--GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.-...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444445555554444433 11122234456666666666666666666666666666666666666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001632 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIK 335 (1041)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 335 (1041)
+..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666655544454554444444433
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0071 Score=61.84 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCh
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQR----DGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK----QGIP-PSC 926 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~ 926 (1041)
..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..|.++|.-.|+++.|.+.|+.... .|-. -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3466677777778889998876655332 221 12345677788889999999999998887653 3311 122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC----hH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAA----G-IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES--SES----DK 995 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~ 995 (1041)
....+|+..|.-..++++|++++.+-+.- + ..-....+.+|..++-..|..++|+.+.+...+. ... ..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 35678888888888999999998875431 1 1123456778888888899999999888885542 111 22
Q ss_pred HHHHHHHHHHHhcCCh
Q 001632 996 FIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~ 1011 (1041)
.....+.+.-...|..
T Consensus 356 Tar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 356 TARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhhHHHHHHhCCC
Confidence 3455555555555543
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.026 Score=61.24 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
..+...+..-+-+...+..|-++|..|-+. ..++......|+|++|..+.++..+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 334444444444556666677777666542 2455666677778888777777654
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0024 Score=52.88 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHCCCCCCHhhHHH
Q 001632 258 FMLSSLHKKSYHRKVIDLWRQMMDKGV-APTDFTYTLVISSFVKGSL--------LEEALKTFNEMKSTGFAPEEVTYSQ 328 (1041)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~~ 328 (1041)
..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++... +-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555677777777777777776 6677777777666655421 2234445555555555555555555
Q ss_pred HHHHH
Q 001632 329 LISLS 333 (1041)
Q Consensus 329 li~~~ 333 (1041)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.0035 Score=65.06 Aligned_cols=131 Identities=10% Similarity=0.112 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA-AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA 900 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 900 (1041)
.+|..++...-+.+..+.|..+|.+..+.+ .-+...|...+..-.. .++.+.|.++|+...+. ++.+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478889999999999999999999998642 1233445555555334 56777799999999887 77788889999998
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSC---THVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.+.|+.+.|..+|++.+.. ++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999975 44443 48899999999999999999999999884
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.0081 Score=67.72 Aligned_cols=136 Identities=15% Similarity=0.044 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcC--------CHHHHHHHHH
Q 001632 815 LGLSLDEKAYMNLVSFYGKAG-----KTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAG--------LYNEVEKLIQ 880 (1041)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g--------~~~~A~~~~~ 880 (1041)
...+.|...|..++.+..... ..+.|..+|++.++. .|+. ..|..+..+|.... +...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344667777777777654422 266788888888875 5554 33343333332211 1122222222
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 881 AMQRD-GFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 881 ~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+.... ..+.+...|..+...+...|++++|...++++++.+ |+...|..++.++...|+.++|++.|+++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22221 122233445544444445566666666666666533 4555555666666666666666666666554
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.28 E-value=0.0011 Score=51.92 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcc
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG-YIEEGINLFEEVRESS 991 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 991 (1041)
..|..++..+...|++++|+..|++.++. .+.+...|..+..+|...| ++++|+..++++.+..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45555666666666666666666666553 1223445555555666666 4666666666655543
No 189
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.27 E-value=0.00037 Score=44.07 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 859 YNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 859 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.01 Score=59.34 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=51.8
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhHHHH
Q 001632 855 GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA---AKYSEAEETINSMQKQGIPPSCTHVNH 931 (1041)
Q Consensus 855 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ 931 (1041)
|...|-.|..+|...|+.+.|..-|.+..+. -.++...+..+..++..+ ....++..++++++..+ +.+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4455666666666666666666666555553 233344444444443322 12345555666666543 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
|...+...|++.+|...++.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666553
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.028 Score=54.21 Aligned_cols=152 Identities=8% Similarity=0.034 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 001632 803 DKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAM 882 (1041)
Q Consensus 803 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 882 (1041)
+..++.|++-. ..+-+.++.++-..|.+.-...++.+.+++..+-++.....|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44555555433 34566788888888889999999999998755556677778888888999999999999988
Q ss_pred HHcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 883 QRDGFSPNSFTYLSLV-----QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 883 ~~~g~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
.+.....|..+++.++ ..|.-++++.+|...+.++.+.+ +.++...|+-+-++.-.|+..+|++.++.+++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 7654444544444433 45667788999999999999865 556667777777777799999999999999984
Q ss_pred CCCHHHH
Q 001632 958 IPDLACY 964 (1041)
Q Consensus 958 ~p~~~~~ 964 (1041)
.|.+.+.
T Consensus 316 ~P~~~l~ 322 (366)
T KOG2796|consen 316 DPRHYLH 322 (366)
T ss_pred CCccchh
Confidence 4544433
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.013 Score=66.06 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCCCcccHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 001632 852 IKPGLISYNIIINVYAA--AG---LYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEA--------AKYSEAEETINSM 917 (1041)
Q Consensus 852 ~~p~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 917 (1041)
...|...|..++++... .+ +...|..+|++..+. .|+ ...+..+..+|... ++...+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44566788888777543 32 377899999999984 455 44455554444322 1233444444444
Q ss_pred HHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 918 QKQ-GIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 918 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
... ..+.+...|..++-.....|++++|...++++++. .|+...|..+...+...|+.++|+..++++....|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 442 12345567777877777889999999999999984 57888899999999999999999999999998887776
No 193
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.23 E-value=0.37 Score=50.58 Aligned_cols=234 Identities=14% Similarity=0.036 Sum_probs=129.3
Q ss_pred HHHHHhhc-CCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHH
Q 001632 621 ILKLLLHT-AGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLV 699 (1041)
Q Consensus 621 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 699 (1041)
++++.+.- +-...+|..--..+...++...|..-...|..-.+..-..+...|.-..+-++....|++.... ...
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~----L~r 365 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD----LKR 365 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH----HHH
Confidence 34444432 2233455555566677777777777777776666654444555555555666656656553310 000
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCC-CCCChhhHHHHHH
Q 001632 700 LRSMIDAYAK---CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN-LDLDTVAYNTCIK 775 (1041)
Q Consensus 700 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~ 775 (1041)
-.+++..-+. .|+++.--+++-+-.. .=...|...++...+..-...|..+|-++.+.+ ..+++..+++++.
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E 441 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE 441 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH
Confidence 0111111111 2223222222211111 123456666776666666778888888888777 4677777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001632 776 AMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG 855 (1041)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 855 (1041)
. ...|+...|..+|+.-...- +.+..-.+-.+..+..-++-+.|..+|+..+.+ +..+
T Consensus 442 ~--------------------~~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~ 499 (660)
T COG5107 442 Y--------------------YATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKT 499 (660)
T ss_pred H--------------------HhcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHh
Confidence 3 33455556666665554431 233333455666777777777888888755543 1112
Q ss_pred --cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 856 --LISYNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 856 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
...|..+|.--..-|+...+..+=+.|.+
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 24566666666677777777766666665
No 194
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.22 E-value=0.00036 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 186 YTILLRLYGQVGKIKLAEQTFLEML 210 (1041)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~ 210 (1041)
|+.+|++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.20 E-value=0.0067 Score=54.91 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
..+.-+...|++++|+.+|+-+.-.+ .-+...|..|...+...+++++|+..|..+....+.|+.....++.+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 44444556677777777777655431 22455556666666666777777777777666666666666667777777777
Q ss_pred hhHHHHHHHHhhc
Q 001632 1011 EHEANDILDSMNS 1023 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~ 1023 (1041)
.++|+..|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776665554
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0057 Score=62.49 Aligned_cols=291 Identities=15% Similarity=0.058 Sum_probs=163.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhcc----CCCC-CChhhHHHHH
Q 001632 704 IDAYAKCGKAEDVYLLYKEATAQGCALDAV----AISILVNTLTNHGKHEQAEIIIHNSFQ----DNLD-LDTVAYNTCI 774 (1041)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li 774 (1041)
..-+|+.|+.....++|+..++.|.. |.. +|..|-++|.-.+++.+|+++...-+. .|-+ -...+...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34588999999999999999988744 433 445555666667777777776542110 0000 0000111122
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001632 775 KAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP 854 (1041)
Q Consensus 775 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 854 (1041)
..+--.|.+++|+....+ .++-|.++=+++.+ ...+..|.+.|...|+.-.. +.-.+.|-.|
T Consensus 103 NtlKv~G~fdeA~~cc~r--------hLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~----~~pee~g~f~ 164 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFR--------HLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGL----EAPEEKGAFN 164 (639)
T ss_pred chhhhhcccchHHHHHHH--------HhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCC----CChhhccccc
Confidence 222223333444333333 23333333333332 12333455555555442110 0001112222
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-C
Q 001632 855 GLISYNIIINVYAAAGLYNEVEKLIQAMQR----DGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK----QGIP-P 924 (1041)
Q Consensus 855 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p 924 (1041)
+.++ ..++.|++.|.+=++ .|- ..--..|..|.+.|.-.|+++.|+...+.=++ .|-. .
T Consensus 165 ~ev~-----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 165 AEVT-----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2111 112334444443221 110 01123567777888888999999887765443 3322 1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------ccCC
Q 001632 925 SCTHVNHLLSAFSKAGLMAEATRVYNESL----AAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRE------SSES 993 (1041)
Q Consensus 925 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 993 (1041)
....+.+|+.++...|+++.|++.|+..+ +.|-+. .....-+|...|.-..++++|+.++.+=.. ....
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23478899999999999999999999854 333322 234455777888888889999999988221 1233
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 994 DKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 994 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
...++..|+.+|...|..++|+.+...-++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4567888999999999999999988876554
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.14 E-value=0.25 Score=50.54 Aligned_cols=199 Identities=19% Similarity=0.131 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 445555666666677777777666666542 112233445555556666666777777777666532222 112222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 001632 900 -AYTEAAKYSEAEETINSMQKQGIPP----SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMD 973 (1041)
Q Consensus 900 -~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 973 (1041)
.+...|++++|...+++.... .| ....+......+...++.++|+..+.+.... .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHH
Confidence 566777777777777776552 22 2223334444455667777777777777663 222 24556666666666
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+++++|...+..+....+.....+..+...+...|+.++|...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666655445555555555566667777766665543
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.11 E-value=0.44 Score=49.17 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=145.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCccc--HHHHHHHHH---HcCC
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLIS--YNIIINVYA---AAGL 871 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~l~~~~~---~~g~ 871 (1041)
+.|..+.|+.+-+..-..- +.-.-.+.+.+...+..|+++.|+++++.-.+. -+.++..- -..|+.+-+ -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666666655542 223446778889999999999999999877654 23455432 222332221 1234
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 872 YNEVEKLIQAMQRDGFSPNSFTYL-SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
...|...-.+..+ +.||-..-. .-..++.+.|+..++-.+++.+.+..-.|+ .+ ++..+.+.|+. ++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHH
Confidence 5566666555554 567755433 334678999999999999999999653443 32 34445566764 222222
Q ss_pred HH--HHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc-CChhHHHHHHHHhhccCc
Q 001632 951 ES--LAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA-GKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 951 ~~--~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~~~ 1026 (1041)
+. ++. ++|| .....++..+-...|++..|..-.+.+.. ..|...+|..|+++=... |+-.++...+.+-.....
T Consensus 317 Ra~~L~s-lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLES-LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHh-cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 22 222 5664 55666777888899999999998888765 455567788888887765 999999998887766443
Q ss_pred -cchhcccc
Q 001632 1027 -PFMKNLEV 1034 (1041)
Q Consensus 1027 -~~~~~~~~ 1034 (1041)
|-|-..-+
T Consensus 395 dPaW~adg~ 403 (531)
T COG3898 395 DPAWTADGV 403 (531)
T ss_pred CCcccccCc
Confidence 44544433
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.019 Score=50.01 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHH
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS----CTHVNHLLSA 935 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 935 (1041)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|+.++++..+.. |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455566666666666666666554443 2234455556666666666666666666531 22 1222233445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 001632 936 FSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~ 953 (1041)
+...|+.++|++.+-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666666665544
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.0058 Score=62.07 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD---LAC 963 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~ 963 (1041)
...|..-+..+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|+..|+.+++. .+-+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHH
Confidence 334555555456678999999999999985 3543 47778889999999999999999998874 2222 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 964 YRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 964 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
+-.++..+...|++++|...|+++.+..|.+...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 4445667778899999999999988888876643
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.11 Score=51.00 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChH---HHHHHHHHHHHhcCChhHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDK---FIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
++.-|.+.|.+..|+..++.+.+..|... ..+..++..|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45668889999999999999888887765 456677888999998885543
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.03 E-value=0.015 Score=59.08 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhHHHHH
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQG--IPPSCTHVNHL 932 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 932 (1041)
.|...+..+.+.|++++|+..|+.+++. .+-+ ...+.-++.+|...|++++|...|+.+++.- .+.....+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444445668888888888888775 2222 2355667777888888888888888888642 11123455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 001632 933 LSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 933 ~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.++...|+.++|.++|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888764
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.03 E-value=0.58 Score=49.22 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEG-IKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
..+|..+++.--+..-++.|..+|-+..+.| ..+++..+++++..++ .|+...|.++|+--... ++.+..-.+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456666666666666777777777777776 4566677777776665 56667777777665443 3333333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
-+..-++-+.|..+|+..++. +..+ ...|..+++-=..-|++..+..+=+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 456667777777777765543 2222 34666666666666777666666666655
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.096 Score=50.67 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhHHHHHHH
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ-----GIPPSCTHVNHLLS 934 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~ 934 (1041)
+.+++++.-.|.+.-.+.++.+.++..-+.+......|+..-.+.|+.+.|...++...+. ++.....+..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4566666666777777777777777655566666777777777778887777777765542 22223333344445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
.|.-++++..|...+.+.+.. -+.|+..-|.-.-.+.-.|+...|++.++.+.+..|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 555566777777777776654 223455555444444456777778888777777666543
No 205
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.02 E-value=0.79 Score=50.60 Aligned_cols=327 Identities=9% Similarity=0.028 Sum_probs=189.2
Q ss_pred ccCCHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hc---
Q 001632 675 KHQKLKEAQDVFKAATV---SCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTL----TN--- 744 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~----~~--- 744 (1041)
..|+.+..+..|+.+.. ..-.+...|...+..-..++++.....+|+++.+. |. .-++....-| ..
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCCh
Confidence 45666777777777552 22245567888888888889999999999998874 21 1222222211 11
Q ss_pred --cCCHHHHHHHHHHhccC----CCCCChhhHHHHHH-HHHhcCChhHHHHHHHHHH-----HHhccCChHHHHHHHHHH
Q 001632 745 --HGKHEQAEIIIHNSFQD----NLDLDTVAYNTCIK-AMLGAGKLHFAASIYERML-----VYGRGRKLDKALEMFNTA 812 (1041)
Q Consensus 745 --~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~A~~~~~~~ 812 (1041)
.-..+++..+-...... ......-.+...++ ....++.++.+..+..+.. +|-........+..|+..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 12233433333332211 01111122222222 1122334444444444433 455555566666666665
Q ss_pred HHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 813 RSLG-------LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 813 ~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
.+.. .+++..+|+..+..-.+.|+.+.+.-+|++..-. +.-=..-|--.++-....|+.+-|-.++....+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 5531 1245668999999999999999999999988642 0001123444444445558888888887766654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCC-CC
Q 001632 886 GFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATR---VYNESLAAGII-PD 960 (1041)
Q Consensus 886 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~-p~ 960 (1041)
-.+....+-..-....-..|+++.|..+++.+.+.- |+.. .-.--+....+.|..+.+.. ++....+ |-. +.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcc
Confidence 222222222222222446789999999999999863 5544 33344556667888888883 3333222 111 11
Q ss_pred --HHHHHHHHHH-HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 001632 961 --LACYRTMLKG-YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG 1009 (1041)
Q Consensus 961 --~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 1009 (1041)
...+--..+. +.-.++.+.|..++.++.+..|++...+..+++.....+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 1112222222 234688999999999999999999999988888876655
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.01 E-value=0.62 Score=49.23 Aligned_cols=43 Identities=5% Similarity=-0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 001632 397 GLLIRIYGKLGLYEDAQKTFAETEQLG----LLSDEKTYLAMAQVHL 439 (1041)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~ 439 (1041)
+..++.+...|++.++..+++++...= ..-+..+|+.++-.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 344555566666666666666655432 2245555555444443
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.015 Score=55.07 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001632 166 ATEFFAWMKLQLSYRPCVVAYTILLRLYGQV-----GKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTF 240 (1041)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 240 (1041)
-...|+... +-..+-.+|..+|+.+.+. |.++=....+..|.+-|+..|..+|+.||+.+=+ |.+. -..+
T Consensus 33 ~~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~ 107 (228)
T PF06239_consen 33 HEELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF 107 (228)
T ss_pred hHHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH
Confidence 355566543 2345777888888888653 6777777777888888888888888888887764 3322 1122
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 001632 241 YSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSL 303 (1041)
Q Consensus 241 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 303 (1041)
|+.+-- -.-.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 108 fQ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 221111 1123445688889999999999999999999998877665
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.94 E-value=0.11 Score=51.18 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--ccHHH
Q 001632 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGL--SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL--ISYNI 861 (1041)
Q Consensus 786 A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 861 (1041)
+..+|+....+...|++.+|++.|+.+...-. +-.....-.++.++-+.|++++|...+++.++. -|+. ..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHH
Confidence 34455555566778888888888888876521 122335556788888999999999999998876 3443 22333
Q ss_pred HHHHHHHcCC-------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 001632 862 IINVYAAAGL-------------YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH 928 (1041)
Q Consensus 862 l~~~~~~~g~-------------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 928 (1041)
.+.+.+..+. ..+|+.. +..++.-|-...-..+|...+..+.+. =...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 3333221111 1223333 333444455555556666555555431 0012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL---ACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~ 981 (1041)
--.++..|.+.|.+..|..-++.+++. .+-.. ...-.|+.+|.+.|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345688999999999999999999985 33232 34566677888888877543
No 209
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.91 E-value=0.071 Score=53.99 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC----CHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGL---ISYNIIINVYAAAGLYNEVEKLIQAMQRDG-FSP----NSFT 893 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~----~~~~ 893 (1041)
.|-.+..++.+-.++.+++.+-..-... |..|.. ....+|.+++...+.++++++.|+...+.- -.. ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555666666665555443 333321 223456777777888999999988876521 111 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQK----QGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLA----AGIIP- 959 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p- 959 (1041)
+..|...|....++++|.-+.....+ .++..=. .....+.-+|...|...+|.+.+++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888889999999999877776665 2221111 1234455677788999889888888643 34433
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
-..+...+.+.|...|+.|.|..-|+++-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23456777888999999999999998854
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.019 Score=54.33 Aligned_cols=85 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 001632 322 EEVTYSQLISLSIK-----HGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKN----------------ENYSKALSL 380 (1041)
Q Consensus 322 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~~ 380 (1041)
|..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555442 244555555555555555555555555555554321 112334555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001632 381 FSEMEKFKVAADEVIYGLLIRIYGKL 406 (1041)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (1041)
+++|...|+-||..++..|+..+++.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 55555555555555555555555443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.89 E-value=0.0058 Score=48.43 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
.|.+.+++++|+++++.+++. .+.++..+......+.+.|++++|...++++.+..|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344444444444444444442 11233344444444444444444444444444444433
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.021 Score=59.33 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.++++|+-+|.+.+++.+|++.+.+.++.+ ++|.-..--=..+|...|+++.|+..|+++.+..|.|-.+...++.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999999853 3355444445678899999999999999999999999999999998877
Q ss_pred hcCChhHH-HHHHHHhhcc
Q 001632 1007 YAGKEHEA-NDILDSMNSV 1024 (1041)
Q Consensus 1007 ~~g~~~eA-~~~~~~~~~~ 1024 (1041)
+..++++. .+++..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 76655554 6788877553
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.83 E-value=0.76 Score=47.52 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001632 676 HQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIII 755 (1041)
Q Consensus 676 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (1041)
.|+.+.|++-|+.|......-..-+..|.-.-.+.|..+.|.+.-++....-.. -...+...+...|..|+++.|++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHH
Confidence 455555555555554322222222333333334445555555555544443211 2234444555555555555555555
Q ss_pred HHh
Q 001632 756 HNS 758 (1041)
Q Consensus 756 ~~~ 758 (1041)
+.-
T Consensus 212 d~~ 214 (531)
T COG3898 212 DAQ 214 (531)
T ss_pred HHH
Confidence 443
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.80 E-value=0.35 Score=47.56 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLG--LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN 864 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 864 (1041)
..++++...-.+.|++++|...|+.+...- -+-...+.-.++.++-+.+++++|...+++....-..-...-|...+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 334444444456677777777777776542 122344555667777788888888888888777522112234555555
Q ss_pred HHH
Q 001632 865 VYA 867 (1041)
Q Consensus 865 ~~~ 867 (1041)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 554
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.0034 Score=49.79 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=54.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
...|.+.+++++|+..++++....|.++..+...+.+|...|++++|.+.+++..+.+-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999999999999999999999999999999876543
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.91 Score=47.77 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001632 325 TYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYG 404 (1041)
Q Consensus 325 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (1041)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-.++-.. .+ .+.-|...+.++.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CCCChHHHHHHHH
Confidence 44555666677777777777655542 35777777778888888888766664332 11 2355777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 405 KLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELM 454 (1041)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 454 (1041)
+.|...+|......+. +..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7788777777765521 234566777777777776665444
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=1.5 Score=49.59 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM 972 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 972 (1041)
+.+--+.-+..-|+..+|.++-.+.. -||...|..-+.++...++|++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444445667788888888776654 3788888888899999999988888776643 2444666888999
Q ss_pred hcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 973 DHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.|+.+||.+++-+... .. ..+.+|.+.|++.+|.++--+-+
T Consensus 756 ~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred hcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHHHHhc
Confidence 99999999998877533 22 46788888899988887755433
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.0092 Score=63.44 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT----HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+...++.+..+|.+.|++++|+..|++.++. .|+.. .|.+++.+|...|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555552 23322 245555555555555555555555544
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.58 E-value=0.41 Score=52.52 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001632 660 ILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA 725 (1041)
Q Consensus 660 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 725 (1041)
..+..+...+...+.+...+.-|-++|.++-. ..+++......++|.+|..+-++..+
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33444555555555666666677777776541 13456666777777777777666544
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.58 E-value=1.3 Score=46.93 Aligned_cols=347 Identities=13% Similarity=0.128 Sum_probs=172.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 001632 155 VVLKEQKGWRQATEFFAWMKLQLSYRPCV----VAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCT--Y 228 (1041)
Q Consensus 155 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~ 228 (1041)
.+|.++++..+|.++|..+-+.....|.. ...+.++++|... +.+.....+.+..+. .| ...|-.+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 46889999999999999886544333332 3356677777654 466666666666554 22 2334444433 3
Q ss_pred HhcCChHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHHH
Q 001632 229 ARWGNHKAMLTFYSAVKER--GIVP------------STAVFNFMLSSLHKKSYHRKVIDLWRQMMDK----GVAPTDFT 290 (1041)
Q Consensus 229 ~~~g~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~ 290 (1041)
-+.+.+.+|.+.+....+. +..+ |...=+..+..+...|.+.++..++++|... ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4778999999988877665 3222 1122244556667788888888777777653 33366777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 291 YTLVISSFVKGSLLEEALKTFNEMKST---GFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSL 367 (1041)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 367 (1041)
|+.++-.+++ ..|-++.+. ++-|+ |.-+|-.|.+.-+ .++...-..+.|...-+..++..
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHH
Confidence 7776666643 233333222 22222 4444444433211 11111111223333333334333
Q ss_pred HHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHh
Q 001632 368 YYKN--ENYSKALSLFSEMEKFKVAADEV-IYGLLIRIYGKLGLYEDAQKTFAETEQLGLL----SDEKTYLAMAQVHLT 440 (1041)
Q Consensus 368 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~ 440 (1041)
..-. ....--.+++......-+.|+-. +...|+..+.+ +.+++..+-+.+....+. --..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 11222334444444433444422 22233333333 344444444333322111 023456667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhc----CCHhHHHHHHHHHHHcCCCChhHHHHHHHH---
Q 001632 441 SRNVEKALDVIELMKSRNMWLSRFAY-------IVMLQCYVMK----EDLGSAEGTFQTLAKTGLPDAGSCNDMLNL--- 506 (1041)
Q Consensus 441 ~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--- 506 (1041)
.++...|...+..+.-- .|+...- ..+-+..+.. -+...-..+|......+......-.-|+.+
T Consensus 311 ~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKH 388 (549)
T ss_pred HHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 77777777777666543 2222211 1122222211 122333444555444444333333333322
Q ss_pred HHhcCC-HHHHHHHHHHHHHc
Q 001632 507 YIKLDL-TEKAKGFIAHIRKD 526 (1041)
Q Consensus 507 ~~~~~~-~~~A~~~~~~~~~~ 526 (1041)
+-+.|. -++|..+++.+.+.
T Consensus 389 lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh
Confidence 334454 77788888877764
No 221
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.52 E-value=2.9 Score=50.12 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 001632 693 CKPGKLVLRSMIDAYAKCG--KAEDVYLLYKEATA 725 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 725 (1041)
..|+ ...-.++.+|.+.+ ..++|+....+...
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3444 34445677777766 56666666665554
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.034 Score=54.93 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP---DLACYRT 966 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ 966 (1041)
.|+.-+. +.+.|++.+|...|...++.. |.+ ...+..|+..+...|++++|..+|..+.+. .+- -+..+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHH
Confidence 4554443 456777888888888877753 222 235566778888888888888888877763 221 1344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
|.....+.|+.++|...|+++.+..|....+-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 55666677788888888888777777766543
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.075 Score=53.22 Aligned_cols=189 Identities=11% Similarity=0.115 Sum_probs=132.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCH
Q 001632 832 GKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY----LSLVQAYTEAAKY 907 (1041)
Q Consensus 832 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~l~~~~~~~g~~ 907 (1041)
-..|++.+|...++++.+. +..|..+++.--++|.-.|+.+.-...++++.-. ..+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578899999999999886 4457788888889999999999888888888764 34454333 3334445689999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP----DLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
++|++.-++..+.+ +.|+-....+.+.+...|+.+++.++..+-... .+- -...|-...--+.+.+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999865 567777888899999999999999998875432 221 122233333345577899999999
Q ss_pred HHH-HHh-ccCChHHHHH---HHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 984 FEE-VRE-SSESDKFIMS---AAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 984 ~~~-~~~-~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
|++ +.. ....|.+... .+--+......+.+-.++-+.+-.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~ 315 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDK 315 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcch
Confidence 998 554 4556664433 2333444555666665555555443
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0095 Score=47.90 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAA----GII-PD-LACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
+++.++.+|...|++++|++.|++.++. |.. |+ ..++..+...|...|++++|+++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666665532 100 11 2344444444555555555555555443
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.41 E-value=0.48 Score=46.63 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHH---HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKF---IMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+.+-|.+.|.+..|+.-++.+.+..+..+. .+..+..+|.+.|-.++|.+.-+-|..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445677888888888888888887666554 455556778888888888776655543
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.40 E-value=1.5 Score=45.60 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKT---HEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
.+...++.+|...+.. ++|..+++.+.+. .|+ +..+..-+..+.+.++.+++.+.+.+|... +.-....+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 3566788888877764 4577777777665 234 344445577777789999999999999886 33233444444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHCCCCCCh
Q 001632 898 VQAYT--EAAKYSEAEETINSMQKQGIPPSC 926 (1041)
Q Consensus 898 ~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 926 (1041)
+..+- .......|...+..++-..+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44331 223345666666666643344444
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.65 Score=49.25 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC-cccHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIK--PG-LISYNIIINVYAA---AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
.|+-.|-...+++...++.+.+...... ++ ...--..+-++.+ .|+.++|++++..+......++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999999875110 11 1111234555666 8999999999999666667788888888887
Q ss_pred HHH----h-----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCCC---CC
Q 001632 900 AYT----E-----AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM----AEATRVY----NESLAAGI---IP 959 (1041)
Q Consensus 900 ~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~---~p 959 (1041)
.|- . ....++|...|.+.-+. .|+...=.+++..+...|.. .+..++. ..+.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 763 2 12467788888888774 47766555666666666642 2223333 11222332 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
|-..+.+++.++.-.|++++|.+.++++....|+.-.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 4556678888888999999999999999887777643
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.35 E-value=0.42 Score=50.58 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHH
Q 001632 839 EASLLFSEMQEEGIKPGLIS---YNIIINVYAAAGLYNEVEKLIQAMQRDG---FSPNSFTYLSLVQAYTE---AAKYSE 909 (1041)
Q Consensus 839 ~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~---~g~~~~ 909 (1041)
+..+.+.+|..+=-.|+..+ ...++-.|....+++.-+++.+.+...- +.-....--.++-++-+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 33444555554411233333 3345557999999999999999998741 11122223344556667 899999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHH----hc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hH-
Q 001632 910 AEETINSMQKQGIPPSCTHVNHLLSAFS----KA-----GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY-IE- 978 (1041)
Q Consensus 910 A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~- 978 (1041)
|+.++..++...-.+++.+|..++..|- .. ...++|+..|.+.-+ +.||...--.++..+.-.|. ++
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccc
Confidence 9999999776556788888888886653 22 247899999999876 34654433333333333333 22
Q ss_pred --HHHHHH----HHH-Hh---ccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 979 --EGINLF----EEV-RE---SSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 979 --~A~~~~----~~~-~~---~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
+..++- ..+ .+ ....|.-.+.+++.+..-.|+.++|.+..++|.....|.|-
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 222222 111 11 12345666778888999999999999999999988877764
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.0082 Score=48.29 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQ--GIP---PS-CTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
+++.+..+|...|++++|+..|++.++. ... |+ ..+++.++.+|...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555431 011 11 1234455555555555555555555543
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.26 E-value=0.055 Score=46.03 Aligned_cols=102 Identities=20% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcC
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTML---KGYMDHG 975 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g 975 (1041)
-+....|+.+.|++.|.+.+.. .|.....||+...+|.-+|+.++|++-+++.++..-+.......+.+ -.|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567888888888888888875 35566788888888888888888888888887742222332222322 2355678
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
+-+.|..-|+.+.+... ++....|+.
T Consensus 130 ~dd~AR~DFe~AA~LGS--~FAr~QLV~ 155 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS--KFAREQLVE 155 (175)
T ss_pred chHHHHHhHHHHHHhCC--HHHHHHHHh
Confidence 88888888888766443 334444443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.017 Score=61.58 Aligned_cols=107 Identities=8% Similarity=0.008 Sum_probs=81.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 923 PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL----ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 923 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+.+...+++++.+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++++.+..++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f--- 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF--- 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH---
Confidence 44566899999999999999999999999998 56663 3589999999999999999999999988533222
Q ss_pred HHHHH--HHHhcCChhHHHHHHHHhhccCccchhcccc
Q 001632 999 SAAVH--LYRYAGKEHEANDILDSMNSVRIPFMKNLEV 1034 (1041)
Q Consensus 999 ~~l~~--~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 1034 (1041)
..+.. -+....+.++..++++.+..-|.++......
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~ 184 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRR 184 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhh
Confidence 11111 1333455678889999999988866544433
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.33 Score=46.69 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
|...|-+|....++..|+..++.--+. .-+.+..+...|+.+| ..||.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 445555566666777777777664431 1123344566666666 5566665555443
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.35 Score=44.67 Aligned_cols=69 Identities=29% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESL-----AAGIIPDLAC 963 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 963 (1041)
...++..+...|++++|...++.++..+ |-+...|..++.+|...|+..+|+++|+++. +.|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555666777777777777777653 4455567777777777777777777776653 2366665544
No 234
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.14 Score=47.34 Aligned_cols=126 Identities=13% Similarity=0.197 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHH
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM---LKG 970 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---~~~ 970 (1041)
+-+...|++++|..-|.++++. +++.. ..|.+.+.++.+.+.++.|++-+.+.++. .| ..-.+| ..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~p--ty~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NP--TYEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--Cc--hhHHHHHHHHHH
Confidence 4567889999999999999985 34332 35666777889999999999999999874 23 222333 346
Q ss_pred HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHH--HHHHHHhhccCccch
Q 001632 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEA--NDILDSMNSVRIPFM 1029 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA--~~~~~~~~~~~~~~~ 1029 (1041)
|.+..++++|+.-|+++.+..|........++.+=-......++ .+++.+++..|-.++
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL 238 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFIL 238 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 78889999999999999999998887777777664433333333 356667766666444
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.08 E-value=0.19 Score=46.39 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
....++..+...|++++|++.++.++.. -|-|...|..++.+|...|+..+|+..|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888874 344777888888888888888888888888654
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.22 Score=50.11 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=114.9
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH----HHHHHHHHHcCCHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY----NIIINVYAAAGLYN 873 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~g~~~ 873 (1041)
-.|++.+|...++++++. .|.|...++--=.+|.-.|+...-...++++.-. ..||...| .++.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888888889998874 4778888887788888999999999999998765 34565333 34455667899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
+|++.-++..+- .+.|...-.++..++...|+..++.++..+-... +----...|-+.+-.+...+.++.|+++|.
T Consensus 193 dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999998875 3567778888888999999999999987765431 100111235556667777899999999998
Q ss_pred HH
Q 001632 951 ES 952 (1041)
Q Consensus 951 ~~ 952 (1041)
.=
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 73
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=3.4 Score=46.18 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHN 757 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (1041)
|.+....-.|.+++...|.-++|.+.|-+... | ...+..|...+++.+|.++.++
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777777777777666544332 1 1234556666666666666544
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.81 Score=44.15 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFS--PN---SFTYLSLVQA 900 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~~---~~~~~~l~~~ 900 (1041)
--...|..+|..+.|--.+++.-+. ....++++|+++|++...-=.. -+ ...+.....+
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3344566666666655555544331 2345667777777765542000 11 2234444566
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHH
Q 001632 901 YTEAAKYSEAEETINSMQK----QGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGI--IP-DLACYRTMLKGYM 972 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~ 972 (1041)
+.+..++++|-..+.+-.. ..--++. ..|-..|-.|....|+..|++.+++--+.+- .+ |..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 7777777777655544331 1112332 3466677777788899999999988554321 12 455666777776
Q ss_pred hcCChHHHHHHHHH
Q 001632 973 DHGYIEEGINLFEE 986 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~ 986 (1041)
..||.|++..++..
T Consensus 239 d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 239 DEGDIEEIKKVLSS 252 (308)
T ss_pred ccCCHHHHHHHHcC
Confidence 77888888877765
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.24 Score=49.44 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
.......|+..+|..+|+..... .+-+......++.+|...|+++.|..++..+-...-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33455677777777777776664 23334555566677777777777777777655422112222222334455555544
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhcCChhH
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES--SESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
.+...+-.++-. -+-|...--.+...+...|+.++|...+-.+... .-.|....-.++.++...|..+.
T Consensus 220 ~~~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 444444444332 1225555555666666777777777666665443 23344566666777666664333
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.99 E-value=0.015 Score=40.22 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
++..+...|.+.|++++|+.+|+++.+..|.|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45566677777777777777777777777777776666553
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.95 E-value=0.0074 Score=38.75 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
|+++++..|.|+.++..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 677888899999999999999999999999863
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.23 Score=42.42 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCC
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 941 (1041)
+++..|+.+.|++.|.+.+.. .+-+...||.-.+++.-+|+.++|+.-+++.++..-+.. +..|...+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788888888888888775 455677788888888888888888888888887422222 2345566677888888
Q ss_pred HHHHHHHHHHHHHCCC
Q 001632 942 MAEATRVYNESLAAGI 957 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~ 957 (1041)
.+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888776653
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=95.79 E-value=0.21 Score=53.68 Aligned_cols=161 Identities=9% Similarity=0.037 Sum_probs=114.3
Q ss_pred ccH--HHHHHHHHHc-----CCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 001632 857 ISY--NIIINVYAAA-----GLYNEVEKLIQAMQRD-GFSPN-SFTYLSLVQAYTE---------AAKYSEAEETINSMQ 918 (1041)
Q Consensus 857 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~m~~~-g~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 918 (1041)
..| ..++++.... ...+.|+.+|.+.... .+.|+ ...|..+...+.. .....+|.++.+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 4555554432 2357788899998832 24554 4456555554432 234567888888888
Q ss_pred HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH--
Q 001632 919 KQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK-- 995 (1041)
Q Consensus 919 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 995 (1041)
+.+ +.|......++.++...|+.+.|...|++... +.|| ..+|-.....+.-+|+.++|.+.++++.+..|--.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 876 66777888888888999999999999999988 4665 55676677777889999999999999888766553
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 996 FIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
.+....++.|+.. ..++|.+++-+-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 5556666688874 467888777553
No 244
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.72 E-value=3.4 Score=43.62 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
.+.+.-+.-+...|+...|.++-++. -.||..-|-..+.+++..+++++-.++... ..++..|...+.++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45666677778889888888776655 237777888889999999999887766432 23457888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 937 SKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.+.|...+|..++.++ ++ ..-+..|.++|++.+|.+..-+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888872 22 34567888999999998877663
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.8 Score=41.56 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H-HHHH-hc-CChHHHHHHHHHHHhccCC
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTM---L-KGYM-DH-GYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---~-~~~~-~~-g~~~~A~~~~~~~~~~~~~ 993 (1041)
-...|++.+|+++|++.....+..+..-|..- + .+++ -+ .|.-.+...+++..+..|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 34456777777777776554344333323211 1 1122 12 4555555556665555554
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.57 E-value=0.31 Score=43.40 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+.|++++|.+.|+.+... .|.+ ....-.|+.+|.+.|++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555555555555442 1111 12333444555555555555555555444
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.24 Score=51.79 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL-ACYRTMLKG 970 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 970 (1041)
..++.|...|.+.+++.+|++..+..++.+ ++|+....--+.+|...|+++.|+..|+++++ +.|+. .+-+-++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456667777889999999999999999875 67777888889999999999999999999988 46644 444444433
Q ss_pred HHhcC-ChHHHHHHHHHHHhcc
Q 001632 971 YMDHG-YIEEGINLFEEVRESS 991 (1041)
Q Consensus 971 ~~~~g-~~~~A~~~~~~~~~~~ 991 (1041)
-.+.. ..++..++|..|....
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 33322 3344467777766543
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.48 E-value=2.5 Score=50.64 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 776 AMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA--YMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.|...|+.++|++.|+. +|+|.+|+.+..++.. ..+... -..|+.-+..++++-+|-++..+....
T Consensus 961 ~Ye~~GklekAl~a~~~------~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen 961 MYERCGKLEKALKAYKE------CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred HHHHhccHHHHHHHHHH------hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence 35556777777766554 6788888888776654 233333 256888888899998988888877653
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQA 881 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (1041)
..-.+..|++...+++|+.+...
T Consensus 1029 -----~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1029 -----PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -----HHHHHHHHhhHhHHHHHHHHHHh
Confidence 12344556666667777665443
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.45 E-value=0.75 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
..+++..+=.|+-+.+++.+.+..+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 3344555556666666666666544
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=95.44 E-value=0.71 Score=42.20 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=49.4
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
+...|++++|..+|.-+.-.+ +-|..-|..|..++-..+++++|...|......+. -|+..+--+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666665544 23444555666666666666666666665544322 2333344455666666666666
Q ss_pred HHHHHHHHH
Q 001632 876 EKLIQAMQR 884 (1041)
Q Consensus 876 ~~~~~~m~~ 884 (1041)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.40 E-value=5.2 Score=43.64 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHH------HHHHHhhccCc-cchhccccccc
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAN------DILDSMNSVRI-PFMKNLEVGSK 1037 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~------~~~~~~~~~~~-~~~~~~~~~~~ 1037 (1041)
.++.+++...|.++.+..|.....+..++..+...-..+... ....+....-+ .|++.+..|++
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 378888999999988887877777777777665532222211 12333333333 37777777765
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.38 E-value=1.6 Score=37.73 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHH
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT---HVNHLLSAFSKAGLMA 943 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~ 943 (1041)
.-.|..++..++..+..... +..-+|=+|--....-+-+-..++++.+-+ --|.. -....+.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH
Confidence 34566777777777766541 333333333222222222333344443333 12222 2334455555544332
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
...+..+..+...|+-+.-.+++..+.....+++..+..++.+|.+.|+..+|.+++.+.-+
T Consensus 87 ------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 ------------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22233445566777777777777776655677888888999999999999999999999888
Q ss_pred cCcc
Q 001632 1024 VRIP 1027 (1041)
Q Consensus 1024 ~~~~ 1027 (1041)
.|+.
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8874
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.30 E-value=1.2 Score=48.04 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001632 836 KTHEASLLFSEMQEE-GIKPGL-ISYNIIINVYAAA---------GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA 904 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~-g~~p~~-~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 904 (1041)
..+.|..+|.+.... .+.|+. ..|..+..++... .+..+|.++.++..+. -+.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhh
Confidence 467899999999833 346664 4565665555432 2356777888888776 366888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 001632 905 AKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD---LACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 905 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 980 (1041)
|+++.|...|++....+ ||. .+|...+.....+|+.++|.+.+++.++ ..|- .......+..|+.+ -.++|
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 99999999999999954 664 4788888888899999999999999877 4553 23333334456655 47888
Q ss_pred HHHHHHHHh
Q 001632 981 INLFEEVRE 989 (1041)
Q Consensus 981 ~~~~~~~~~ 989 (1041)
+.+|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 888877544
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=7.7 Score=44.86 Aligned_cols=175 Identities=16% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 187 TILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTM----LCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSS 262 (1041)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 262 (1041)
..-++.+.+...++.|..+...- + .+..+...+ .+-+.+.|++++|...|-+-...- .| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 34455555555555555543321 1 122222222 222335566666665555433210 11 223444
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 342 (1041)
|........-..+++.+.+.|.. +...-+.|+..|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-+++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44444555555556666666543 23344566666666666666555544433 2211 01122344445555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 343 LSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEM 384 (1041)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 384 (1041)
..+-..... .......++ -..+++++|.+.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444322 122233332 2345666666666554
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.29 Score=48.56 Aligned_cols=95 Identities=20% Similarity=0.318 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhHHHHHH
Q 001632 859 YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFT---YLSLVQAYTEAAKYSEAEETINSMQKQG--IPPSCTHVNHLL 933 (1041)
Q Consensus 859 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 933 (1041)
|+..+.. .+.|++.+|.+.|...++. .+-+..+ +-=|+.++...|++++|..+|..+.+.- .+.-+..+--|+
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5554444 3566677777777777764 3322222 2225667777778777777777777621 122234566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 001632 934 SAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
....+.|+.++|..+++++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777778888888777765
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.22 E-value=6.5 Score=43.77 Aligned_cols=99 Identities=10% Similarity=-0.048 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 463 RFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542 (1041)
Q Consensus 463 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 542 (1041)
..+|..-+......|+.+.+.-+|+.+.-....-...|-..+......|+.+-|..++....+..++-.+.+...-....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 34666666666666777766666666654333344455555555555566666666666555543332222222222223
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 001632 543 CKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~ 561 (1041)
-..|++..|..+++.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 3456777777777766655
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.83 E-value=2 Score=44.04 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=138.4
Q ss_pred hccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CcccHHHHHHHHHHc
Q 001632 797 GRGRKLDKALEMFNTARSLG--LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE--GIKP---GLISYNIIINVYAAA 869 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p---~~~~~~~l~~~~~~~ 869 (1041)
....+.++|+..|.+.+.+- ...-..++..+..+.+..|.++++...--.-++. .... -...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666766666665431 1112346667788888888888776542211111 0011 124556667777777
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhHHHHHHHHHHhcC
Q 001632 870 GLYNEVEKLIQAMQRD-GFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGI---PP--SCTHVNHLLSAFSKAG 940 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~-g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g 940 (1041)
-++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+.-. .| ...++..|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 7777777776655442 22221 12344577788888999999999999886321 12 1247889999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHHHHHHH-----HHHHHhcCChHHHHHHHHHHHhc--cCChH----HHHHHHHHHH
Q 001632 941 LMAEATRVYNESLAA----GIIPDLACYRTM-----LKGYMDHGYIEEGINLFEEVRES--SESDK----FIMSAAVHLY 1005 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~----~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~l~~~~ 1005 (1041)
|+++|.-+..++.+. ++..=...|+.+ .-++...|....|.+.-+++-+. ...|. ..+-.++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888876542 222212344433 33556678887888777775432 22332 3355678999
Q ss_pred HhcCChhHHHHHHHHh
Q 001632 1006 RYAGKEHEANDILDSM 1021 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~ 1021 (1041)
...|+.+.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999887776655543
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.74 E-value=4 Score=38.83 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 001632 782 KLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNI 861 (1041)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 861 (1041)
+-+.|.-.|++...|...|-+.-|+--|.+..... +.-..+||-|.-.+...|+++.|.+.|+...+....-+-...|.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 34567777777777888888888888888877754 33456888888888999999999999999988632212222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH-HHHHHhc
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHL-LSAFSKA 939 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~ 939 (1041)
-|+.| -.|+++-|.+-+.+.-+.. -.|=...|..++ ...-++.+|..-+.+=-+ ..|..-|... +..| .
T Consensus 140 gi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y--L 210 (297)
T COG4785 140 GIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY--L 210 (297)
T ss_pred ceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH--H
Confidence 22222 3688888877666654431 222233333332 234566677655543332 2333444322 2233 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 940 GLMAEATRVYNESLAAGIIPD-------LACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
|++. -+.+++++.+ +-..+ ..||--+..-+...|+.++|..+|+-+...
T Consensus 211 gkiS-~e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 211 GKIS-EETLMERLKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhcc-HHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2221 1222333322 22212 234555666777889999999999887653
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.71 E-value=1.2 Score=50.04 Aligned_cols=115 Identities=19% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC--CC-CChhHHHHHHHHHHhcCCHHHH
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLS-LVQAYTEAAKYSEAEETINSMQKQG--IP-PSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
.+.+.|.++++.+.+. -|+...|.. -...+...|++++|++.|+...+.. .+ -....+.-++..+...++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455555555555553 233333322 2233445555555555555444210 00 1112344455555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKG-YMDHGYI-------EEGINLFEEV 987 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~ 987 (1041)
.+.+..+.+. -......|.-+..+ +...|+. ++|..++.++
T Consensus 325 ~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 6666666553 23334444444333 2344544 5555555553
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.70 E-value=0.9 Score=40.52 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=72.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC--THVNHLLSAFS 937 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 937 (1041)
.....+.|++++|++.|+.+... .+.. ...-.-|+.+|.+.|++++|...+++.++.. |+. ..|-....+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHH
Confidence 44456789999999999999876 4433 3345667889999999999999999999953 433 23444444443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
.-...+ ..++.+. +..-| .+....|..-|++++...|.+..+
T Consensus 94 ~~~~~~---~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDE---GSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhh---hHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 322222 2222222 12222 223557888888888878877654
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.60 E-value=5.7 Score=40.03 Aligned_cols=193 Identities=22% Similarity=0.211 Sum_probs=135.3
Q ss_pred hccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHHHcCCHHH
Q 001632 797 GRGRKLDKALEMFNTARSL-GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN-VYAAAGLYNE 874 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~ 874 (1041)
...+.+..+...+...... ........+..+...+...+++..+...+.........+ ......... .+...|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEE 148 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHH
Confidence 3344455555555444431 224555667777777888888999999999988753332 122333333 6889999999
Q ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 875 VEKLIQAMQRDGF--SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 875 A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
|...+++...... ......+......+...++.++|...+....+.. +. ....+..+...+...|++++|...+..
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 149 ALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999865211 1233444455555778899999999999999853 33 367788899999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 952 SLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 952 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
.... .|+ ...+..+...+...|.++++...+.+.....+.
T Consensus 228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 228 ALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9874 443 445555566666777899999999998876665
No 262
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.52 E-value=5.3 Score=39.26 Aligned_cols=312 Identities=13% Similarity=0.180 Sum_probs=172.3
Q ss_pred CCChHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhh
Q 001632 694 KPGKLVLRSMIDAY-AKCGKAEDVYLLYKEATAQGCALDAV---AISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVA 769 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 769 (1041)
.||+..-|..-..- .+...+++|+.-|.+..+-......+ .+..++....+.+++++-...+.+++.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT--------- 93 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT--------- 93 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH---------
Confidence 55665544432221 23457889999999988764333444 344556777788888777777666532
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 001632 770 YNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL-GLSLDEK----AYMNLVSFYGKAGKTHEASLLF 844 (1041)
Q Consensus 770 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 844 (1041)
.|++..-.+-.++.+...-..+ ....+.+-..+.|+.-++. .-..|.. +-..|...|...|.+.+-.+++
T Consensus 94 ---YIkSAVTrNySEKsIN~IlDyi--StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 94 ---YIKSAVTRNYSEKSINSILDYI--STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred ---HHHHHHhccccHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHH
Confidence 2333222222222221111111 1122222222333222110 0011222 2234666677777777777777
Q ss_pred HHHHHc-----CCCCC-------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH----HHHHhcCCH
Q 001632 845 SEMQEE-----GIKPG-------LISYNIIINVYAAAGLYNEVEKLIQAMQRD-GFSPNSFTYLSLV----QAYTEAAKY 907 (1041)
Q Consensus 845 ~~m~~~-----g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~----~~~~~~g~~ 907 (1041)
.++.+. |- .| ...|..-|..|...++-..-..+|++.+.- .--|-......+- ..+.+.|.+
T Consensus 169 kqLh~SCq~edGe-dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 169 KQLHQSCQTEDGE-DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEF 247 (440)
T ss_pred HHHHHHhccccCc-hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchH
Confidence 777654 21 11 234666677777777777777777776542 1234333333221 234567888
Q ss_pred HHHHHHH-HHHH---HCCCCCCh---hHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 908 SEAEETI-NSMQ---KQGIPPSC---THVNHLLSAFSKAG----LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 908 ~~A~~~~-~~~~---~~~~~p~~---~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 976 (1041)
++|-.-| +... +.| .|.. .-|-.|+.++.+.| +-.+|.- ....|.......|+.+| +.++
T Consensus 248 e~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAKP-------yKNdPEIlAMTnlv~aY-Q~Nd 318 (440)
T KOG1464|consen 248 EKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAKP-------YKNDPEILAMTNLVAAY-QNND 318 (440)
T ss_pred HHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccCC-------CCCCHHHHHHHHHHHHH-hccc
Confidence 8875443 3333 244 2332 23556667777766 2222211 11234556778888887 4567
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 977 IEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 977 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
..+-..++..-+...-.|+++..++-+++.. =+.+--+++++--...+|||+.
T Consensus 319 I~eFE~Il~~~~~~IM~DpFIReh~EdLl~n-iRTQVLlkLIkPYt~i~Ipfis 371 (440)
T KOG1464|consen 319 IIEFERILKSNRSNIMDDPFIREHIEDLLRN-IRTQVLLKLIKPYTNIGIPFIS 371 (440)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHH-HHHHHHHHHhccccccCchhhH
Confidence 7777777777777778889998888777654 4566667777777788998764
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.52 E-value=1 Score=49.86 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA 900 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 900 (1041)
..-.+.++..+.+.|..+.|+++.+.-..+ .....+.|+++.|.++.++ .++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 445777888888888888887776554332 3344677888888776553 3466788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 980 (1041)
...+|+++-|++.|++..+ +..|.-.|.-.|+.+.-.++.+...+.|- ++....++.-.|++++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 8888888888888877554 45677777788887777777776665532 23334444455666666
Q ss_pred HHHHHH
Q 001632 981 INLFEE 986 (1041)
Q Consensus 981 ~~~~~~ 986 (1041)
++++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.47 E-value=0.39 Score=44.59 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 933 LSAFSKAGLMAEATRVYNESLAAGIIPDL-----ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 933 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
+.-+.+.|++++|..-|..+++. +++.+ ..|..-..++++.+.++.|+.-..++++..|...-++..-+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 34567899999999999999986 55543 3455556678899999999999999999999888888888999999
Q ss_pred cCChhHHHHHHHHhhccCc
Q 001632 1008 AGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 1008 ~g~~~eA~~~~~~~~~~~~ 1026 (1041)
..++++|++=++++.+..-
T Consensus 181 ~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhHHHHHHHHHHHHHhCc
Confidence 9999999999999887543
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=4.6 Score=40.75 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=87.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 829 SFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 829 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 908 (1041)
......|++.+|..+|....+...+ +......|+.+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456678888888888887775222 334556677888888888888888887654322222222233345555555555
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA--GIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 975 (1041)
+...+-+.+-. -+.|...-..+...|...|+.++|.+.+-.++.+ |.. |...-..++..+.--|
T Consensus 221 ~~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555444 2335666677888888888888888877777654 222 3444555555554444
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.39 E-value=0.53 Score=41.56 Aligned_cols=97 Identities=6% Similarity=0.037 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 183 VVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSS 262 (1041)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 262 (1041)
..++..+|.++++.|+.+....+++..-.- ..+... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 456777888888888888888877665422 111000 0000 00111234555555555555
Q ss_pred HHhcCChhHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMD-KGVAPTDFTYTLVISSFV 299 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~ 299 (1041)
|+.+|++..|+++.+...+ .+++.+..+|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5555555555555555432 344444555555554443
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.39 E-value=7.5 Score=40.47 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=32.5
Q ss_pred HhhcCHHHHHHHHHHHHhhC-CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 158 KEQKGWRQATEFFAWMKLQL-SYRPCV------VAYTILLRLYGQVGKIKLAEQTFLEML 210 (1041)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (1041)
.++|+.+.|..++..+.... ...|+. ..|+.....+.+..+++.|..++++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45788888888888776543 223332 235555555544447777777776644
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.37 E-value=3.1 Score=37.94 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..++..+.+.+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......+..+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555555556666666555543 244445555555555442 2233333331 12223334455555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH-GYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
|.++++..++.++-. +...+..+... ++++.|++++.+ ..++..+..++..+
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 666666666655411 11122222333 566666666654 22444555554443
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=4.4 Score=37.07 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+...|-+++...-.+.+-..+.+-.......|.-+-.+.|++.+|..+|+++.+
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344455555444444443222222222333333344455555555555555443
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.37 Score=47.32 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 001632 272 VIDLWRQMMDKGVAPTDFTYTLVISSFVKGSL 303 (1041)
Q Consensus 272 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 303 (1041)
+++++++|...|+.||..+-..|++++.+.|.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 45566666666666666666666666655544
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.04 E-value=11 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 897 LVQAYTEAAKYSEAEETINSMQKQGIPP--SCTHVNHLLSAFSKAGLMAEATRVYNES 952 (1041)
Q Consensus 897 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 952 (1041)
|.....+.|+.+||.+.+++|.+.. +. .......|+.+|...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344445555566665555555421 11 1123445555555555555555555554
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.89 E-value=0.53 Score=41.53 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-GLLSDEKTYLAMA 435 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li 435 (1041)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444555555555555555555554444332 3333344444433
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.88 E-value=4.1 Score=44.22 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
..+-..|..+.-+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 4444557777778899999999999987652111 2234557888888899999998888887543
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.73 E-value=2.6 Score=38.50 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 001632 147 KLSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQV 196 (1041)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 196 (1041)
......++..+...+.+.....+++++.... ..+....+.++..|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 3445556666655556666666666655432 23444555666666554
No 275
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.63 E-value=19 Score=42.39 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=111.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 001632 828 VSFYGKAGKTHEASLLFSEMQEEGIKPGLI-------SYNIIIN-VYAAAGLYNEVEKLIQAMQRD----GFSPNSFTYL 895 (1041)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~ 895 (1041)
+.......++++|..++.+....=..|+.. .++.+-. +....|++++|+++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 444556788999999988876641122221 3443322 234578889999988887764 1234455667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH---HHH--HHHHHhcCCH--HHHHHHHHHHHHC--CCCCC----HH
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHV---NHL--LSAFSKAGLM--AEATRVYNESLAA--GIIPD----LA 962 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~g~~--~~A~~~~~~~~~~--~~~p~----~~ 962 (1041)
.+..+..-.|++++|..+.....+..-.-+...+ ..+ ...+..+|+. .+.+..+....+. +-.|- ..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 7778888899999999988877763222233332 222 3456677843 3333333333221 01111 23
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHhccCC--hH-HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 963 CYRTMLKGYMDH-GYIEEGINLFEEVRESSES--DK-FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 963 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++..+.+++.+. +.-.+|..-++-.....+. ++ ..+..|+.++...|+.++|...++++..
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555665552 2222333333322222222 22 3334678888999999999999888765
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.54 E-value=0.26 Score=33.97 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 967 (1041)
.+..++..|...|++++|+++|+++++. .+-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHh
Confidence 4556667777777777777777777664 22244444443
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=19 Score=41.84 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC
Q 001632 469 MLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQV-DFDEELYRSVMKIYCKEGM 547 (1041)
Q Consensus 469 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 547 (1041)
++.-|.....+.+...+++.+.+.|..+...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 34444455555555566666666666666666666677777666666665555443 111 112 2334455555555
Q ss_pred hhhHHHHHHH
Q 001632 548 VTDAEQFVEE 557 (1041)
Q Consensus 548 ~~~A~~~~~~ 557 (1041)
.++|..+-..
T Consensus 479 l~~a~~LA~k 488 (933)
T KOG2114|consen 479 LDEAELLATK 488 (933)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 278
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.38 E-value=4.9 Score=34.93 Aligned_cols=134 Identities=13% Similarity=0.226 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHH
Q 001632 406 LGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRF---AYIVMLQCYVMKEDLGSA 482 (1041)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a 482 (1041)
.|.+++..++..+.... .+..-+|.+|--....-+-+-..+.++.+.+- .|.. -.-.++.+|...+.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc----
Confidence 45566666666655543 24444555554444444444444444443221 1111 12234444444432
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 001632 483 EGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562 (1041)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 562 (1041)
+......-++....+|+-+.-.+++..+.+ +-.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 222233345556667777777777776654 235677777777777777777777777777777766
Q ss_pred C
Q 001632 563 S 563 (1041)
Q Consensus 563 ~ 563 (1041)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.38 E-value=0.58 Score=45.98 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001632 342 ALSLYKDMRSRGLIPSNYTCASLLSLYYKNEN 373 (1041)
Q Consensus 342 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 373 (1041)
++.++++|...|+.||..+-..|++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 45555555555555555555555555555443
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.35 E-value=1.6 Score=48.29 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=83.8
Q ss_pred HcCCCHHHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 299 VKGSLLEEALKTFN--EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSK 376 (1041)
Q Consensus 299 ~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 376 (1041)
.-.|+++++.++.. ++.. . -| ..-.+.++..+-+.|..+.|+++...-. .-.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N-IP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34567777655554 1121 1 11 3446677777777777777777644321 22344556777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 377 ALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKS 456 (1041)
Q Consensus 377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 456 (1041)
|.++.++. .+...|..|.+...++|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77654332 2566777777777777777777777766543 45566666777777777777666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 001632 457 RNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQ 487 (1041)
Q Consensus 457 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 487 (1041)
+|- ++....++.-.|+.++..+++.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 652 3444445555566666555544
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=6.2 Score=36.18 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCC
Q 001632 831 YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSF-TYLSL--VQAYTEAAK 906 (1041)
Q Consensus 831 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l--~~~~~~~g~ 906 (1041)
+++.++.++|..-|..+.+.|..-=+ .....+.....+.|+...|+..|.++-...-.|-.. -.--| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35566677777777777666443111 111122334556677777777777766543333332 11112 223456677
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 907 YSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 907 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+++...-.+-+...+.+-....-..|+-+-.+.|++.+|...|+.+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777766666655442333334456666667777777777777776553
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.06 E-value=6.9 Score=36.88 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYL-----SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS 937 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 937 (1041)
...+...|++++|+..++..... |....+. .|.......|.+++|+.+++...+.+. .......-+++|.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34556667777777777666542 1112222 233455666777777777766655331 1222344556677
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 001632 938 KAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~ 955 (1041)
..|+-++|..-|++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 777777777777776664
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.99 E-value=9 Score=39.95 Aligned_cols=148 Identities=14% Similarity=0.228 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC-
Q 001632 837 THEASLLFSEMQEEGIKPGLISYNIIINVYAA--AG----LYNEVEKLIQAMQRDGF---SPNSFTYLSLVQAYTEAAK- 906 (1041)
Q Consensus 837 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~- 906 (1041)
+++.+.+++.|.+.|++-+..+|-+..-.... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999998777766553333322 22 35678899999998632 3555666665433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 907 ---YSEAEETINSMQKQGIPPSCT--HVNHLLSAFSKAGL--MAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 907 ---~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 979 (1041)
.+.++.+|+.+.+.|+..+.. ...+++........ ..++.++++.+.+.|++.....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 366788899999888776544 22333322222222 45889999999999998877777665443333333324
Q ss_pred HHHHHHH
Q 001632 980 GINLFEE 986 (1041)
Q Consensus 980 A~~~~~~ 986 (1041)
...-+..
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4444333
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.73 E-value=0.24 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
|..|+.+|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666644
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.72 E-value=14 Score=38.47 Aligned_cols=129 Identities=15% Similarity=0.283 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCH
Q 001632 304 LEEALKTFNEMKSTGFAPEEVTYSQLISLSIK--HG----KSDEALSLYKDMRSRGL---IPSNYTCASLLSLYYKNENY 374 (1041)
Q Consensus 304 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~ 374 (1041)
+++...+++.|.+.|+.-+..+|-+-...+.. .. ....|..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666777777776666555443222221 12 24457777777776542 3344555555443 33332
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 375 ----SKALSLFSEMEKFKVAADEV--IYGLLIRIYGKLGL--YEDAQKTFAETEQLGLLSDEKTYLAM 434 (1041)
Q Consensus 375 ----~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l 434 (1041)
+.++.+++.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44566666666655543322 22222222111111 33566666666666666555555443
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.45 E-value=0.63 Score=47.01 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
+-|.++|++++|+..|...... .| +.+.+.+.+.+|.+.+.+..|+.-++.++..+ ..-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4466666777776666666653 34 66666666666666666666666666655421 11112233333333345666
Q ss_pred HHHHHHHHHHHhccCCh
Q 001632 978 EEGINLFEEVRESSESD 994 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~ 994 (1041)
++|.+-++.+.+..|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 66666666666655554
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.18 E-value=6.8 Score=45.42 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH--HHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCCcccHHHHHHHHHHcC
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMN--LVSF-YGKAGKTHEASLLFSEMQE-------EGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g 870 (1041)
....|.+.++...+.|. ........ +..+ +....+.+.|...|+.+.+ +| .......+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 35677788887777652 11112222 2222 3355677888888877766 44 3334556666666543
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH----hcC
Q 001632 871 -----LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTE-AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS----KAG 940 (1041)
Q Consensus 871 -----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 940 (1041)
+.+.|+.++...-+.| .|+...+...+.-... ..++..|.+.|....+.|..+ .+..+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCC
Confidence 4566777777666654 2333333222211111 134567777777777766322 2222222221 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 941 LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+.+.|..++++..+.| .|........+..+.. +.+..+...+..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 6677777777776665 2222222222223333 555555555555444
No 288
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=27 Score=40.22 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--hHHHH-HHHHHHHcCCCChhHHHHHHHHHHhc
Q 001632 434 MAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL--GSAEG-TFQTLAKTGLPDAGSCNDMLNLYIKL 510 (1041)
Q Consensus 434 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (1041)
+|+-+...+.+..|+++...+...-..- ...|....+.+.+..+. +++.+ +-+++... .....+|..+..-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 3455555666666666666554332111 34455555555544321 11111 11221111 23444555666656666
Q ss_pred CCHHHHHHHHH
Q 001632 511 DLTEKAKGFIA 521 (1041)
Q Consensus 511 ~~~~~A~~~~~ 521 (1041)
|+++-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 66666666554
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=7.9 Score=36.49 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=22.9
Q ss_pred HHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 970 GYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 970 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
.....|++++|+..++...+. .-.+.....-++++...|+.++|..-+.+..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 344445555555544443221 011122333344555555555555554444443
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.73 E-value=9.3 Score=35.52 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001632 309 KTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK 388 (1041)
Q Consensus 309 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 388 (1041)
+.+..+.+.++.|+...|..++..+.+.|++... ..+...++-+|.......+-.+. +....+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444445556666666666666666666654433 33333444455444443332221 1222233333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
=...+..+++.+...|++-+|.+.....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555566666666666665443
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.42 E-value=0.27 Score=31.50 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 914 INSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 914 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
|++.++.+ |.+...|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444433 444556666777776677666664
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.35 E-value=4.2 Score=38.69 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--CChHHHHHH--H
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGYMDHGYIEEGINLFEEVRESS--ESDKFIMSA--A 1001 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--l 1001 (1041)
.+..+++.|++.|+.++|.+.|.++.+....+. ...+-.+++.....|++..+...+.++.... ..|....+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666677777777777777777665433332 2244555666666667777666666655422 222222221 1
Q ss_pred --HHHHHhcCChhHHHHHHHHhh
Q 001632 1002 --VHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 1002 --~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+-.+...|++.+|.++|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 222344677777777665543
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.29 E-value=25 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHhcCChhHHHHHHHHhh
Q 001632 1005 YRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 1005 ~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.|+|++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 668999999999998875
No 294
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=32 Score=39.46 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcc-cH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 830 FYGKAGKTHEASLLFSEMQEEGIKPGLI-SY---NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA 905 (1041)
Q Consensus 830 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 905 (1041)
++.--|+-++|..+.++|... + |+. -| -++..+|+-.|+.....+++.-.... ...|..-+....-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d--k-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD--K-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC--C-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 344567778999999999864 2 332 22 24566788888876666666654543 4556665666666677778
Q ss_pred CHHHHHHHHHHHHHCCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 906 KYSEAEETINSMQKQGIPPSCTH--VNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+++....+.+-+.+. ..|-... --.|+-+|+-.|+ .+|+.+++-|..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 888888888888774 3454432 2334444444454 689999999875
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.25 E-value=14 Score=35.32 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001632 833 KAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAE 911 (1041)
Q Consensus 833 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 911 (1041)
..|-+.-|.-=|.+... +.|+. ..||-+.--+...|+++.|.+.|+...+.. +....+...-.-++.-.|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhH
Confidence 34445555555555554 35664 567878777889999999999999998852 222333333344456689999998
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHh
Q 001632 912 ETINSMQKQGIPPSCTHVNHLLSAFSK-AGLMAEATRVYNESLAAGIIPDLACYRTMLKG-YMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 989 (1041)
+-+...-+.+ +.|+ |..|---+.. .-+..+|..-+.+--+ ..|...|...+-. |...=..+. +++++.+
T Consensus 154 ~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a 224 (297)
T COG4785 154 DDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLKA 224 (297)
T ss_pred HHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHHh
Confidence 8887777654 3333 2333222222 3367777765554322 2344445444333 322222222 3333333
Q ss_pred ccCCh-------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 990 SSESD-------KFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 990 ~~~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
....+ ..+|.-++..|...|+.++|..+++-.....+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 32222 36778889999999999999999987655443
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.74 E-value=13 Score=34.06 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=22.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 001632 868 AAGLYNEVEKLIQAMQRDGFSPNSFTYLS-LVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 868 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
+.++.+++..++..+.- +.|....... -...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555443 2333222221 12224455555555555555444
No 297
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.69 E-value=13 Score=37.37 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
++.....|..+|.+.+|.++.++.++. .+.+...+..++..|...||--.|...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556677777777777777777664 334666777777777777776666666666544
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.38 E-value=0.69 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+...+...|++++|+..++++.+.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=20 Score=34.91 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCHHHHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA-GLMAEATR 947 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~ 947 (1041)
.++..+|+..++.. |..|...|++..|-....++- ..|-.. .++++|+.
T Consensus 86 k~~~~eAv~cL~~a---------------ieIyt~~Grf~~aAk~~~~ia---------------EiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKA---------------IEIYTDMGRFTMAAKHHIEIA---------------EIYESDLQDFEKAIA 135 (288)
T ss_pred ccChHHHHHHHHHH---------------HHHHHhhhHHHHHHhhhhhHH---------------HHHhhhHHHHHHHHH
Confidence 33666666655544 334666777666555444433 333322 46667777
Q ss_pred HHHHHHHC--CCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHhc-cCChHHHHH------HHHHHHHhcCChhHHH
Q 001632 948 VYNESLAA--GIIPDLACYRTMLK---GYMDHGYIEEGINLFEEVRES-SESDKFIMS------AAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 948 ~~~~~~~~--~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~------~l~~~~~~~g~~~eA~ 1015 (1041)
.|+..-+- |-..+...-.+++. .-...+++.+|+.+|+++... ...+..-|. ..+-++.-.++.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 77665442 22223333333332 234678999999999996653 333322222 2222222235555555
Q ss_pred HHHHHhhccCc
Q 001632 1016 DILDSMNSVRI 1026 (1041)
Q Consensus 1016 ~~~~~~~~~~~ 1026 (1041)
.-+++-.+..-
T Consensus 216 ~ALeky~~~dP 226 (288)
T KOG1586|consen 216 RALEKYQELDP 226 (288)
T ss_pred HHHHHHHhcCC
Confidence 55555554443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.72 E-value=30 Score=40.25 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=135.3
Q ss_pred HhccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 001632 796 YGRGRKLDKALEMFNTARS-------LGLSLDEKAYMNLVSFYGKAG-----KTHEASLLFSEMQEEGIKPGLISYNIII 863 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 863 (1041)
++...+++.|+..|+.+.+ ++ +....+.+..+|.+.. +.+.|..++.+..+.|. |+... .+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~--~lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQY--LLG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHH--HHH
Confidence 6678899999999999987 55 3335667777777743 56779999999988764 33322 233
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 001632 864 NVYAAA---GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY--TEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938 (1041)
Q Consensus 864 ~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 938 (1041)
..|... .+...|.++|...-+.|.. +..-+..+.... .-..+.+.|...+++..++| .|....-...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 333322 4678999999999888732 222222222111 13347899999999999987 4432323333444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH---Hhc-CChHHHHHHHHH-HHhccCChHHHHHHHHHHHHhc---C
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTML-KGY---MDH-GYIEEGINLFEE-VRESSESDKFIMSAAVHLYRYA---G 1009 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~~-g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---g 1009 (1041)
++++.+.-.+..+.+.|.+ ...+-..++ ... ... +-.+.-...+.. .+.....++.....++++|... +
T Consensus 411 -~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred -ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCC
Confidence 8888888888887776554 222222221 111 111 112333333333 4456777888888899988764 2
Q ss_pred -ChhHHHHHHHHhhccC
Q 001632 1010 -KEHEANDILDSMNSVR 1025 (1041)
Q Consensus 1010 -~~~eA~~~~~~~~~~~ 1025 (1041)
+.+.|...+.+..+.+
T Consensus 489 ~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG 505 (552)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 4667776666655544
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.58 E-value=0.8 Score=29.24 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.|..++.+|...|++++|++.|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.48 E-value=0.97 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
+|..+...|...|++++|+..|+++.+..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566677777777777777777777766554
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.48 E-value=0.73 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 964 YRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 964 ~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
|..|...|.+.|++++|+.+|+++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777733
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.36 E-value=53 Score=38.93 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHc----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 834 AGKTHEASLLFSEMQEE----GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
.|++++|+.+.+...+. -..+..+.+..+..+..-.|++++|..+.++..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45556666555555443 1122233344444555555666666555554443
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.35 E-value=5.2 Score=36.59 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 890 NSFTYLSLVQAY---TEAAKYSEAEETINSMQKQGIPPSCTHV-NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR 965 (1041)
Q Consensus 890 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 965 (1041)
+..+.+.|+... .+.++.++++.++..+.- +.|..... ..-+..+...|+|.+|+++++++.+. .|....-.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~k 81 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAK 81 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHH
Confidence 444555665544 577899999999999998 45765543 34567788899999999999998764 34444445
Q ss_pred HHHHHHHh-cCChHHHHHHH-HHHHhccCChHHHHHHHHHHHHh
Q 001632 966 TMLKGYMD-HGYIEEGINLF-EEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 966 ~l~~~~~~-~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
.|+..|.. .|| ..+..+ +++.+. .+|+.+...+-.++..
T Consensus 82 ALlA~CL~~~~D--~~Wr~~A~evle~-~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 82 ALLALCLYALGD--PSWRRYADEVLES-GADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHcCC--hHHHHHHHHHHhc-CCChHHHHHHHHHHHh
Confidence 55554443 343 333333 335443 3455555444444443
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.84 E-value=4.2 Score=41.33 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA-----AGIIPDLACYRTM 967 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 967 (1041)
+..++..+...|+++.+.+.++++.+.. +-+...|..++.+|...|+...|+..|+++.+ .|+.|.+.+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3445555666666666666666666653 44555666666666666666666666666543 3555555444433
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.44 E-value=5.5 Score=37.91 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT--HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR---TM 967 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 967 (1041)
.+..++.-|.+.|+.++|.+.|.++.+....+... .+-.++......|++..+...+.++...--..+..... ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35556666777777777777777776654333322 45566666677777777777766654321111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHHHHh
Q 001632 968 LK--GYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 968 ~~--~~~~~g~~~~A~~~~~~~~~ 989 (1041)
.. .+...++|.+|-+.|-.+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23356788888877766443
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.33 E-value=22 Score=33.17 Aligned_cols=133 Identities=13% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 001632 239 TFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTG 318 (1041)
Q Consensus 239 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 318 (1041)
++.+.+.+.+++++...+..++..+.+.|++.. +.+++..++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 344444555566666666666666666665433 2334444555554444433333322 222233333333321
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 319 FAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEME 385 (1041)
Q Consensus 319 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 385 (1041)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0012444555566666666666665553221 11122334555555555544444444443
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.88 E-value=4.9 Score=40.89 Aligned_cols=78 Identities=8% Similarity=0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 001632 664 EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA-----QGCALDAVAISIL 738 (1041)
Q Consensus 664 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~l 738 (1041)
.++..++..+..+|+.+.+...++.+....|-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 36677888999999999999999998888899999999999999999999999999998865 4778877776665
Q ss_pred HHH
Q 001632 739 VNT 741 (1041)
Q Consensus 739 ~~~ 741 (1041)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.56 E-value=1.3 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+..++..|...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777665
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.33 E-value=50 Score=36.24 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
+.|....-+++..++...++.-.+.+..+|...| -+...|..++.+|... ..+.-..+|+++.+.. -.|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHH
Confidence 3555666677777777777777778888887764 3566777777887777 3466677777777752 2344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPP--S---CTHVNHLLSAFSKAGLMAEATRVYNESLA-AGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 971 (1041)
+.-|. .++.+++..+|..+...-++. + ...|.-|...- -.+.+.-..+..+..+ .|...-.+.+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 377777777777777542221 1 11333333211 2355555555555543 23232344444455556
Q ss_pred HhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 972 MDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
....++.+|++++.-+.+....|.-+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 66778888888888777777777666666655443
No 312
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.31 E-value=42 Score=35.29 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC----------
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMD----HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG---------- 1009 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 1009 (1041)
.|...|.++-..+ +......+...|.. ..++++|..+|+++.+... ......+. ++...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 5666666655543 22222233333321 2256666666666555333 33444444 333333
Q ss_pred -----ChhHHHHHHHHhhccCcc
Q 001632 1010 -----KEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 1010 -----~~~eA~~~~~~~~~~~~~ 1027 (1041)
+...|...+......+.+
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCCh
Confidence 556666666666555553
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.57 E-value=11 Score=35.05 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q 001632 928 HVNHLLSAFSKA 939 (1041)
Q Consensus 928 ~~~~l~~~~~~~ 939 (1041)
++.+++.+|...
T Consensus 71 Alw~lGnA~ts~ 82 (186)
T PF06552_consen 71 ALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.33 E-value=41 Score=34.28 Aligned_cols=135 Identities=15% Similarity=0.232 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001632 409 YEDAQKTFAETEQ-LGLLSDEKTYLAMAQVHLT-SR-NVEKALDVIELMKSR-NMWLSRFAYIVMLQCYVMKEDLGSAEG 484 (1041)
Q Consensus 409 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 484 (1041)
+.+|.++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++....+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555542111 1233456666666666555 22 233334444444432 457788888899999999999999999
Q ss_pred HHHHHHHc-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 001632 485 TFQTLAKT-GL-PDAGSCNDMLNLYIKLDLTEKAKGFIAH-----IRKDQVDFDEELYRSVMKIYC 543 (1041)
Q Consensus 485 ~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~ll~~~~ 543 (1041)
++...... ++ .|...|..+++.....|+..-...++++ +.+.++..+..+-.++-..|.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99988776 44 6899999999999999998877777665 234466666666665554443
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.82 E-value=1.4e+02 Score=39.94 Aligned_cols=86 Identities=6% Similarity=-0.045 Sum_probs=53.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCH
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI-LVNTLTNHGKH 748 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~ 748 (1041)
+......|+++.|...|+.+....++....++.++......|.++..+...+....+ ..+....++. -+.+-++.+++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 334456688888888888877666666777777666666677777766655555443 1222223322 24445777777
Q ss_pred HHHHHHHH
Q 001632 749 EQAEIIIH 756 (1041)
Q Consensus 749 ~~A~~~~~ 756 (1041)
+.....+.
T Consensus 1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred hhhhhhhh
Confidence 77666644
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.80 E-value=4.5 Score=36.25 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 928 HVNHLLSAF---SKAGLMAEATRVYNESLAAGIIPDLACYR-TMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 928 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
..+.|++.. ...++.+++..++..|.- +.|+..-.. .-++.++..|++.+|+.+|..+.+..+..+..-..++.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 445555433 347888999998888875 567544332 23456788899999999999988776666777777777
Q ss_pred HHHhcCCh
Q 001632 1004 LYRYAGKE 1011 (1041)
Q Consensus 1004 ~~~~~g~~ 1011 (1041)
++...|+-
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 77777764
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=7.1 Score=39.51 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 001632 213 GCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKER---GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF 289 (1041)
Q Consensus 213 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 289 (1041)
|...+..+...++..-....+.+.+...+-+++.. ...++... ...++.+. .-+.++++.++..-++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33334444444454444455566666665555432 11222111 12222222 234557777777778888888888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 001632 290 TYTLVISSFVKGSLLEEALKTFNEMKST 317 (1041)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (1041)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.89 E-value=1.4 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 001632 997 IMSAAVHLYRYAGKEHEANDILD 1019 (1041)
Q Consensus 997 ~~~~l~~~~~~~g~~~eA~~~~~ 1019 (1041)
....++.++...|+.++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777765
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.87 E-value=3 Score=42.38 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 1011 (1041)
-+.-|.++|.+++|+.-|.+.+.. .+.+++++..-..+|.+...|..|..-...+......-.-+|+.-+.+-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 356789999999999999998874 3338888888888999998888888777776665444444555555555566666
Q ss_pred hHHHHHHHHhh
Q 001632 1012 HEANDILDSMN 1022 (1041)
Q Consensus 1012 ~eA~~~~~~~~ 1022 (1041)
.||.+=.+..+
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 66665554443
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.76 E-value=95 Score=36.25 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=60.1
Q ss_pred hhhhccCcccHHHHHHHHHHHhhcCC---chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 001632 605 MLSLYLTDDNFSKREKILKLLLHTAG---GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKE 681 (1041)
Q Consensus 605 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 681 (1041)
-+.+.++.+.+++|+.+.+......+ -...+...|..+...|+.++|-...-.-...+..-+.--+..+...++...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 35677888999999999998887766 456778888888888988888653322222233333333333333333221
Q ss_pred HHHHHHHhhcCCC-CChHHHHHHHHHHHh
Q 001632 682 AQDVFKAATVSCK-PGKLVLRSMIDAYAK 709 (1041)
Q Consensus 682 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 709 (1041)
++.-+..+.+ .+...|..++..+..
T Consensus 442 ---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 ---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 2222222222 345567776666665
No 321
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.72 E-value=61 Score=34.02 Aligned_cols=182 Identities=16% Similarity=0.105 Sum_probs=113.8
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH----c
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK----AGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA----A 869 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~ 869 (1041)
..+++..+.+.+......+. ......+...|.. ..+..+|...|+.+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 45667777777777766432 2333334444443 4467889999998777654 2233445666654 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA-------KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK---- 938 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 938 (1041)
.|..+|.++|.+..+.|..+...+...+...|..-+ +...|...|.++-+.+ +......|+..|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 488999999999999876554333444555454331 2347899999988876 44555666666643
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhccC
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG---------------YIEEGINLFEEVRESSE 992 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 992 (1041)
..+.++|...|++.-+.|. ......+. .+...| +...|..++........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 3388999999999998765 22222233 445554 66666666666555433
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.67 E-value=2 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 996 FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+++.++.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.56 E-value=12 Score=33.70 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 890 NSFTYLSLVQAY---TEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 890 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+....+.|+... ...++.++++.+++.|.- +.|+.. .-..-+..+...|+|++|+++++++.+.
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444555555543 468999999999999998 456654 3334567788899999999999999874
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.99 E-value=10 Score=40.62 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
|.--...|++-.|-+-+...... .+.+..........+.+.|+++.+.+.+...... +.....+...+++-....|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++|....+.|+...++ ++.........-...|-++++.-.++++....|+.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.87 E-value=14 Score=35.29 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
+.+.|+ ++|.+.|-++...+.-.+......|..- ....+.+++..++-..++. +-.+|+..+.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 4555555555555444444444444433 3344556666666665542 1134455556666666666655
Q ss_pred HHH
Q 001632 943 AEA 945 (1041)
Q Consensus 943 ~~A 945 (1041)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 554
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.85 E-value=2.3 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555544
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.45 E-value=2.7 Score=28.26 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+++.|+..|...|++++|+.++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777777777777777777777654
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.29 E-value=11 Score=41.94 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=99.8
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
..|+++.|.+++..+. ....+.+++.+.++|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 3455555554332221 335566777788888888776543 22211 1223357888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
+..+. .+..-|..|..+....|++..|.+.+....+ |..|+.++...|+-+.-..+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 77654 3567788999999999999999888887665 34677777788887766666666666543
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
. | ...-+|...|+++++++++....
T Consensus 724 ~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 724 N-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred c-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 2 2 23345667899999998887753
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.70 E-value=1.3e+02 Score=36.42 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 699 VLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 699 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
-|..|+..|...|..++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778889999999999999999998874
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.29 E-value=13 Score=36.52 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 995 KFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 995 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
..+++.++.+..+.|+.++|.+.+.++...+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3556667777777777777777777766543
No 331
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.25 E-value=46 Score=33.95 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=67.1
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cCC-hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhH
Q 001632 196 VGKIKLAEQTFLEMLE-AGCEPDEIACGTMLCTYAR-WGN-HKAMLTFYSAVK-ERGIVPSTAVFNFMLSSLHKKSYHRK 271 (1041)
Q Consensus 196 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (1041)
+..+-+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+. +.+-.++..+.-.++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3344566666653211 2234455555555555544 221 222222222222 23456667777777777777777777
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 001632 272 VIDLWRQMMDK-GVAPTDFTYTLVISSFVKGSLLEEALKTFNE 313 (1041)
Q Consensus 272 a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (1041)
..++++.-... +...|...|..+|......|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77777766554 4455667777777777777777666665543
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.86 E-value=18 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+..+-+..+....+-|++.+..+.+++|.+.+|+.-|+.+++.+..+..+...+|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y 82 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIY 82 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHH
Confidence 5556666666666778888888888888888888888888888777655443343
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.59 E-value=2.2 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 997 IMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 997 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++..++.+|...|++++|.+.++++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888888888888888888764
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.58 E-value=26 Score=34.34 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR-TMLKGYMDHGYIE 978 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~ 978 (1041)
|....+++.|...|.+.+. +.|+. .-|..-+.++.+..+++.+.+-..+.++ +.|+.+--. .+.........+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3444556666666666665 34555 3455666777777777777777777766 455544322 2333455666677
Q ss_pred HHHHHHHHHHh
Q 001632 979 EGINLFEEVRE 989 (1041)
Q Consensus 979 ~A~~~~~~~~~ 989 (1041)
+|+..++++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777777644
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.36 E-value=42 Score=36.51 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=79.1
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH---CCC--CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 001632 890 NSFTYLSL-VQAYTEAAKYSEAEETINSMQK---QGI--PP---SCTHVNHLLSAFSKAGLMAEATRVYNESLA------ 954 (1041)
Q Consensus 890 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~---~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 954 (1041)
|...+..| .+.+.-.|++.+|.+++...-- .|. .| ++..||+|+-...+.|.+.-+..+|.+++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 44443333 3446678899999888765442 221 12 334567887777777877777777777663
Q ss_pred -CCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 955 -AGIIPDL-----------ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 955 -~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
.|++|.. .+|++ .-.|...|+.-.|.+-|.+.......+|..|..|+.++...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3555432 22332 33566889999999999999888899999999999988753
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.18 E-value=11 Score=30.77 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 942 MAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
.=++.+-++.+...++-|++.+..+.+++|.+.+|+.-|+.+++.+..+...
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~ 74 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA 74 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 3355555566655566677777777777777777777777777766655443
No 337
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.12 E-value=1.3e+02 Score=35.46 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=21.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 704 IDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTL 742 (1041)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 742 (1041)
..++.-+|+++.|++.+-+ ..+...|.+.+.+.+.-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~ 301 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY 301 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence 3445668999999988877 222234566655555443
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.09 E-value=3.7 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
+|..+...|...|++++|+..|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666777788888888888888776555
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.74 E-value=37 Score=38.02 Aligned_cols=26 Identities=0% Similarity=-0.115 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 001632 254 AVFNFMLSSLHKKSYHRKVIDLWRQM 279 (1041)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m 279 (1041)
.-|..|..+..+.+++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555555555555555444443
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.70 E-value=3 Score=26.16 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 001632 932 LLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.69 E-value=32 Score=35.11 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001632 851 GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG---FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT 927 (1041)
Q Consensus 851 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 927 (1041)
|......+...++..-.....+++++.++-++...- ..++.. -.+.+..+. .=+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444445555556655555666777777766665431 111111 111222222 235567777777666777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+++.+++.+.+.+++.+|..+...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777777666654
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.54 E-value=1.1e+02 Score=33.95 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHH
Q 001632 427 DEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNL 506 (1041)
Q Consensus 427 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 506 (1041)
|.....+++..+..+....-+..+..+|..-| -+...|-.++++|... .-+.-..+|+++.+....|...-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44445556666666666666666666665543 2445566666666665 34555566666665555555544455544
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001632 507 YIKLDLTEKAKGFIAHIRK 525 (1041)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~ 525 (1041)
|-+ ++.+.+..+|..+..
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 444 555555555555443
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.40 E-value=76 Score=32.25 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 465 AYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIR 524 (1041)
Q Consensus 465 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 524 (1041)
+++.+...|...|.+.+|.++.+......+-+...+..|+..+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445556677777777777777777777776677777777777777777666666666553
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=79.16 E-value=99 Score=33.41 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 001632 666 TASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTN 744 (1041)
Q Consensus 666 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 744 (1041)
+..|+.-|.-.|++.+|..+...+.-.+-....++.+++.+.-+.|+-...+++++..-..| ..|.+.+-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 45677888889999999999888775555677888889988888888877788887777654 3455555555544
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.02 E-value=20 Score=34.28 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----CChHHHHHHHHHHHHhcCChhH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESS----ESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
+.|+ ++|.+.|-.+...+.--++... ..+..|+..-|.++++.++-++.+.. ..|+.++..|+.+|.+.|++++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 5667777776655433333333 33344445666777777777766643 3457777888888888888777
Q ss_pred H
Q 001632 1014 A 1014 (1041)
Q Consensus 1014 A 1014 (1041)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 6
No 346
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.93 E-value=67 Score=37.60 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred hcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001632 544 KEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKI 576 (1041)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 576 (1041)
+.|++.+|.+.+-.+...++.|...-...+...
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 458888888888888888888876665555543
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.59 E-value=0.32 Score=44.73 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHHhccCCHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 001632 670 IGSYGKHQKLKEAQDVFKAAT-VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYK 721 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 721 (1041)
+..+.+.+.......+++.+. .+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444444433 2223334444555555555544444444443
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.74 E-value=83 Score=31.75 Aligned_cols=137 Identities=14% Similarity=0.099 Sum_probs=71.3
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHH
Q 001632 539 MKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKR 618 (1041)
Q Consensus 539 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 618 (1041)
.+-..+.+++++|+..+.++...|+..|..+.+ ........+..+|...|++...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-------------------------EqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-------------------------EQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-------------------------HHHHHHHHHHHHHHhcCCcchH
Confidence 344566778888888888888888877766632 2223444455666666666655
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhhcCCCC--
Q 001632 619 EKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKH-QKLKEAQDVFKAATVSCKP-- 695 (1041)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-- 695 (1041)
.+.+.+.-+. |.+...+....+..++++.+... ..++.-..+.+....--..
T Consensus 65 ~~~i~~sre~-------------------------m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk 119 (421)
T COG5159 65 GDTITSSREA-------------------------MEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK 119 (421)
T ss_pred HHHHHhhHHH-------------------------HHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5544433220 11111222233444444444322 2233333333321100000
Q ss_pred ----ChHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001632 696 ----GKLVLRSMIDAYAKCGKAEDVYLLYKEATA 725 (1041)
Q Consensus 696 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 725 (1041)
-...-..++.++.+.|++.+|+.+.+.+..
T Consensus 120 r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 120 RKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 011224577888888888888877766543
No 349
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=85 Score=31.66 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCcccHHHH-HHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEM----QEEGIKPGLISYNII-INVYAAAGLYNEVEKLIQAMQR----DGFSPNSFTYL 895 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~ 895 (1041)
.-++..+-+.|++.+|+.+...+ .+..-+|+.++...+ -.+|-...+..++..-+..... .-++|-...-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 35788899999999998876544 334556776664433 3455555666555554444332 12455544444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHHC--CCCCChhHHHHHHHHH---HhcCCHHHHHHHHHHH--HHCCCCCCHHHHHH
Q 001632 896 SLVQAY--TEAAKYSEAEETINSMQKQ--GIPPSCTHVNHLLSAF---SKAGLMAEATRVYNES--LAAGIIPDLACYRT 966 (1041)
Q Consensus 896 ~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~~~~p~~~~~~~ 966 (1041)
-|.++- +...++.-|..+|=+..+. ....+...+..|-.++ ...+..++...++..- ++.--..+......
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 454443 4556778888887777762 2234444443333322 2344555544443321 11000012223333
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 967 MLKGYMD--HGYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 967 l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
+..++.. ..+++.|+.-|+.- ...|+.+.+++-.+|
T Consensus 289 vaea~~NRsL~df~~aL~qY~~e---l~~D~~iRsHl~~LY 326 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDE---LHQDSFIRSHLQYLY 326 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHH---hccCHHHHHHHHHHH
Confidence 3344432 24677777776663 344555555444433
No 350
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=87 Score=31.66 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-H
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQE----EGIKPGLIS-YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFT-Y 894 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~ 894 (1041)
...+..+...|++-++.+.+.+.+.+... .|.+.|+.. -..|.-.|....-.++-++..+.|.+.|...+... |
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34677789999999999998887766544 477766532 23344455555667888999999999987666543 3
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 001632 895 LSLVQA-YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG 940 (1041)
Q Consensus 895 ~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 940 (1041)
.+.-.. +....++.+|-.++......--......|...+..-.-+|
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 332222 3456788898888877775321222234544444333344
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.02 E-value=26 Score=32.81 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHHcCCHHHHH-------HHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001632 837 THEASLLFSEMQEEGIKPGLIS---YNIIINVYAAAGLYNEVE-------KLIQAMQRDGFSPN-SFTYLSLVQAYTEAA 905 (1041)
Q Consensus 837 ~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~-------~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 905 (1041)
++.|.+..+.-...+. .|... |...+.-+++.....++. .-|++.+. +.|+ ..++..+.++|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 5666666666544421 23332 333344444444434444 44444444 4555 456778888876554
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 906 K-----------YSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 906 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
. +++|...|+...+ ..|+...|+.-+... ++|=++..+..+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 3 3344444444444 246666665555444 2344555554443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.97 E-value=18 Score=34.83 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 001632 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQ--VDFDEELYRSVMKIY 542 (1041)
Q Consensus 466 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~ 542 (1041)
.+.-+..+.+.+.+.+++...+.-++..+.+......++..++-.|++++|..-++..-... ..+...+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 44455666777888888888888888888788888888888888999998887777665432 333456777777653
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.95 E-value=13 Score=41.13 Aligned_cols=87 Identities=10% Similarity=-0.002 Sum_probs=41.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
...|+...|.+.+.......-...-+....|.+...+.|...+|-.++.+.+... ...+.++..++++|....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3445555555555444332111112233344444555555555555555555432 233344455555555555555555
Q ss_pred HHHHHHHH
Q 001632 947 RVYNESLA 954 (1041)
Q Consensus 947 ~~~~~~~~ 954 (1041)
+.++++++
T Consensus 697 ~~~~~a~~ 704 (886)
T KOG4507|consen 697 EAFRQALK 704 (886)
T ss_pred HHHHHHHh
Confidence 55555554
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.29 E-value=1.1e+02 Score=33.27 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCC------------------CCCHHHHHHH---HHHHHhcCCHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQR-------DGF------------------SPNSFTYLSL---VQAYTEAAKYS 908 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~------------------~~~~~~~~~l---~~~~~~~g~~~ 908 (1041)
.++..+...+...|+.+.|.+++++.+- ..+ .-|..-|.++ +..+.+.|-+.
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~r 120 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWR 120 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHH
Confidence 4445555556666666666555555431 111 1233344433 45677888888
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFS-KAGLMAEATRVYNESLA 954 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 954 (1041)
-|.+..+-+...+..-|+......|+.|+ +.++++--+++++....
T Consensus 121 TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 121 TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 88888888888764346777777777764 56777777777777654
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.42 E-value=9.7 Score=42.00 Aligned_cols=130 Identities=11% Similarity=0.060 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 875 VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 875 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
|-.++-.|.. .+.|--.+.|.-.--....|+...|.+.+.......-....+..-.|+..+.+.|...+|-.++.+.+.
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 4444444433 244444444433222345799999999988877632122334567788888999989999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 955 AGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 955 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.. ...+.++-.+.+++.-..++++|++.|.++.++.+.++++-+.|..+-|
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 53 5567788888999999999999999999999999999988777766655
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.17 E-value=1.8e+02 Score=34.42 Aligned_cols=190 Identities=15% Similarity=0.109 Sum_probs=99.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-----cccHHHHHHH--HHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHH
Q 001632 832 GKAGKTHEASLLFSEMQEEGI-KPG-----LISYNIIINV--YAAAGLYNEVEKLIQ--------AMQRDGFSPNSFTYL 895 (1041)
Q Consensus 832 ~~~g~~~~A~~~~~~m~~~g~-~p~-----~~~~~~l~~~--~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~ 895 (1041)
.-.+++..|...++.|.+.-- .|+ ...+..++.| +-..|+.+.|+..|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999998876411 122 2233333333 335689999999998 344444455555544
Q ss_pred HH--HHHHHhcCC--HHH--HHHHHHHHHHC-CCCCC--hhHHHHH-HHHHHhc--CCHHHHHHHHHHHHHCC---CCCC
Q 001632 896 SL--VQAYTEAAK--YSE--AEETINSMQKQ-GIPPS--CTHVNHL-LSAFSKA--GLMAEATRVYNESLAAG---IIPD 960 (1041)
Q Consensus 896 ~l--~~~~~~~g~--~~~--A~~~~~~~~~~-~~~p~--~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~---~~p~ 960 (1041)
.| +..+...+. .++ ..++++.+... ...|+ ..+++.+ +.++..- -...++...+.+.++.- ....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 42 222332222 223 66666665541 11232 2233333 3333221 13346666665544321 1111
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh---H-H-----HHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 961 ---LACYRTMLKGYMDHGYIEEGINLFEEVRESSESD---K-F-----IMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 961 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~-~-----~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
..+++.|...+. .|+..+............... . . .-..+.+.|...|+.++|..+..+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 122333333444 788888777777644422221 1 1 22345566888999999999887754
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.53 E-value=1.3e+02 Score=32.55 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCC-----C-------------CChhHHHH---HHHHHHh
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK-------QGI-----P-------------PSCTHVNH---LLSAFSK 938 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-----~-------------p~~~~~~~---l~~~~~~ 938 (1041)
.+--..++..+...+.++|+.+.|.+++++++- ..+ . -|...|.+ .+..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 344566777788888999999888888877651 122 1 12233433 3567889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHhcCCh-
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGY-MDHGYIEEGINLFEEVRESSESD-----KFIMSAAVHLYRYAGKE- 1011 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~- 1011 (1041)
.|-+..|.++++-++..+..-|+.....+++-| .++++++--+.+++........+ |......+-++...++.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 999999999999999865444787777778765 47889988888888754411111 12334455555666666
Q ss_pred --------------hHHHHHHHHhhc
Q 001632 1012 --------------HEANDILDSMNS 1023 (1041)
Q Consensus 1012 --------------~eA~~~~~~~~~ 1023 (1041)
++|.+.+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHH
Confidence 778777766543
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.78 E-value=20 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=24.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDE--KAYMNLVSFYGKAGKTHEASLL 843 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 843 (1041)
...+.++|+..|..+++.-..+.. .++..|+.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554322211 2444556666666666665544
No 359
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.55 E-value=21 Score=29.29 Aligned_cols=60 Identities=7% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 838 HEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 838 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
=++.+-++.+....+-|++....+.+++|.+.+|+.-|+.+|+-.+.+ +..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 355566666666666777777777788888888888888888766643 222334454444
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.10 E-value=5.7 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 1000 AAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 1000 ~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
.++.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45666666677777776666666443
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.03 E-value=1.4e+02 Score=31.95 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHH
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA---GLMAEATRVYN 950 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~ 950 (1041)
.-+.+|++.++. .+.+......++..+.+..+.++..+-+++++... +.+...|...++..... -.+++...+|.
T Consensus 49 ~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344556665554 23344445555555666666666666666666642 33455555555544331 13445555555
Q ss_pred HHH
Q 001632 951 ESL 953 (1041)
Q Consensus 951 ~~~ 953 (1041)
+.+
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 443
No 362
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.49 E-value=1.5e+02 Score=32.12 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 324 VTYSQLISLSIKHGKSDEALSLYKDMRSRGLIP---SNYTCASLLSLYYKNENYSKALSLFSEMEK 386 (1041)
Q Consensus 324 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 386 (1041)
.+|..++..+.+.|.++.|...+..+...+... +......-+...-..|+..+|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555554422110 111222223333444555555555554444
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.43 E-value=1.2e+02 Score=31.10 Aligned_cols=82 Identities=26% Similarity=0.314 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHH-HH
Q 001632 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA-AV 1002 (1041)
Q Consensus 924 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~ 1002 (1041)
.++.....++..|.+.|++.+|+..|-.- -.++...+..++.-....|. +.+...+.. .+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHH
Confidence 35566677888889999988888766432 22333333223332223333 333222222 23
Q ss_pred HHHHhcCChhHHHHHHHHhhcc
Q 001632 1003 HLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 1003 ~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
--|...|+...|..+++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3355578888888877766654
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.17 E-value=6 Score=23.37 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 001632 931 HLLSAFSKAGLMAEATRVY 949 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~ 949 (1041)
.++..+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444444444444443
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.68 E-value=58 Score=31.51 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
|.+.-+..+.+.+.+++|++..++-.+. -+-|......|++.|+-.|++++|..-++-.-+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444556666777777777777666554 344555566666777777777777776666665
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.14 E-value=2.5e+02 Score=34.22 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=27.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001632 436 QVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMK 476 (1041)
Q Consensus 436 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 476 (1041)
-.|+.....+.+...++.+....-..+....+.++..|+..
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 34556667777778888777766566666777777766543
No 367
>PRK09687 putative lyase; Provisional
Probab=70.71 E-value=1.4e+02 Score=31.08 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 924 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
++..+-...+.++.+.|+ .+|+..+-+.++.+ + .....+.++.+.|+ .+|+..+.++.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh
Confidence 333444444445555444 34444444444321 1 11233444444444 245555554444
No 368
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.42 E-value=1.1e+02 Score=35.65 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 001632 248 GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMD--KGVAPTDFTYTLVISSFVKGSLLEEAL 308 (1041)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (1041)
+++|+..+....-.-..+...+...+++.--+-. .+-..+..+|..=|+.+|+..+...|-
T Consensus 796 niKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaD 858 (1102)
T KOG1924|consen 796 NIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSAD 858 (1102)
T ss_pred hcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccc
Confidence 4678777655554444555555555555444322 122355677888888888887766554
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.04 E-value=43 Score=29.60 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 923 PPSCTHVNHLLSAFSKAG---LMAEATRVYNESLAAGIIP--DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 923 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
.++..+--.+.+++.+.. +..+.+.++++..+. -.| +..+.--|.-++++.+++++++++.+.+.+..|+|.-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 466667777888887765 457778888888762 233 2334444566788888899998888887776665543
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.97 E-value=57 Score=28.93 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001632 888 SPNSFTYLSLVQAYTEAAK---YSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL 961 (1041)
Q Consensus 888 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 961 (1041)
.+...+--.+.+++.+..+ +.+.+.+++.+.+.. +|+ ......|.-++.+.|+++++.++++.+++ .+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 5666666677788876654 566788888888733 333 23455677788899999999999999987 45543
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.47 E-value=14 Score=29.03 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=8.3
Q ss_pred hcCChHHHHHHHHHHHhc
Q 001632 973 DHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~~~~~ 990 (1041)
...+.++|+..+.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK 35 (80)
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 344444455444444443
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.43 E-value=16 Score=30.07 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhcCChh-HHHHHHHHh
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES--DKFIMSAAVHLYRYAGKEH-EANDILDSM 1021 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~-eA~~~~~~~ 1021 (1041)
+.|....-.+...+...|++++|+..+-.+....+. +-.....|+.++...|.-+ -+.+..++|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 446667777778888888888888888887765433 3466677777777777643 455555544
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.09 E-value=1.4e+02 Score=30.41 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HhcCChHHHHHHH
Q 001632 294 VISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLS-----IKHGKSDEALSLY 346 (1041)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~ 346 (1041)
-|-.|.|.|+...+.++-...+...-.-+...|.+++..| .=.|.+++|+++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3334455555555555554444431111222344433333 2346666666555
No 374
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.84 E-value=72 Score=26.69 Aligned_cols=47 Identities=6% Similarity=-0.034 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 001632 446 KALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKT 492 (1041)
Q Consensus 446 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 492 (1041)
+..+-+..+....+.|++....+.+++|.+.+|+..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666666666666666544
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.84 E-value=14 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 001632 932 LLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44445555555555555555443
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.42 E-value=1.9e+02 Score=30.92 Aligned_cols=99 Identities=8% Similarity=-0.053 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHHhcC------------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhc
Q 001632 692 SCKPGKLVLRSMIDAYAKCG------------KAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSF 759 (1041)
Q Consensus 692 ~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 759 (1041)
..|.|+.+|-.++..--..- -.+.-+.+++++++.+. -+...+..++..+.+....++..+.++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44666777766665432221 13455677777777632 344556666777777777777777788777
Q ss_pred cCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHH
Q 001632 760 QDNLDLDTVAYNTCIKAMLG---AGKLHFAASIYER 792 (1041)
Q Consensus 760 ~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~ 792 (1041)
...+. +...|...++.... .-.++....+|.+
T Consensus 93 ~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 93 FKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 76543 55666666664433 1234444444444
No 377
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.26 E-value=2 Score=39.41 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 897 LVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 897 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 976 (1041)
++..+.+.+.......+++.+...+...+....+.++..|++.+..++.+++++..- ...+ ..++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDL-----DKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-C-----THHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCH-----HHHHHHHHhcch
Confidence 455566677777777777777765544556677777777777776666666666221 1222 234555666666
Q ss_pred hHHHHHHHHH
Q 001632 977 IEEGINLFEE 986 (1041)
Q Consensus 977 ~~~A~~~~~~ 986 (1041)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.78 E-value=1.7e+02 Score=30.10 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH---cCCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 001632 815 LGLSLDEKAYMNLVSFYGKAGKTH-EASLLFSEMQE---EGIK--PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFS 888 (1041)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~---~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 888 (1041)
.+.+.|......++..+...+.-+ +-..+.+++++ .|-. -|+.....+...|.+.|++.+|...|-.- -.
T Consensus 43 ~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~ 118 (260)
T PF04190_consen 43 SEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TD 118 (260)
T ss_dssp TT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----H
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CC
Confidence 455556555555555555443221 22223333322 2211 13445566777778888887777665321 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 889 PNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 889 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
++...+..++......|...++-- . ..-.+--|.-.|+...|...++...+.
T Consensus 119 ~~~~~~~~ll~~~~~~~~~~e~dl--------------f-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 119 PSAFAYVMLLEEWSTKGYPSEADL--------------F-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHHHTSS--HHH--------------H-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcchhH--------------H-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222223332333333322211 1 112223455667777777777666543
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.41 E-value=1.2e+02 Score=30.57 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYA-AAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 884 (1041)
++..+-++|+++++...++++.+.+...+..-.|.+..+|- ..|....+...+..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 45566677777777777777777755555555666666663 23444555555555544
No 380
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.41 E-value=42 Score=37.87 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=43.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPSCT------HVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDH 974 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 974 (1041)
.+..+|..+.+.|..-... ++.|.. ....|.-+|....+.|.|.++++++.+. .| ++.+--.+..+....
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--DRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHh
Confidence 3445566666665554442 222221 2344445555555666666666666553 22 333444444455556
Q ss_pred CChHHHHHHHHHHHh
Q 001632 975 GYIEEGINLFEEVRE 989 (1041)
Q Consensus 975 g~~~~A~~~~~~~~~ 989 (1041)
|+-++|+..+..+..
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 666666666665544
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.00 E-value=2.9e+02 Score=32.71 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC--HHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHH--
Q 001632 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLE-AGCEPD--EIACGTMLCTYA-RWGNHKAMLTFYSAVKERGIVPSTA-- 254 (1041)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~-- 254 (1041)
..+..|..||. .|.+.++.+.+ ..+.|. ..++-.+...|. ...+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 45556666664 34455555552 233332 245556666665 5568888888888664432223222
Q ss_pred ---HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHCC---CCCCH
Q 001632 255 ---VFNFMLSSLHKKSYHRKVIDLWRQMMDK----GVAPTDFTYTLV-ISSFVKGSLLEEALKTFNEMKSTG---FAPEE 323 (1041)
Q Consensus 255 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~ 323 (1041)
....++..+.+.+... |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234455555555555 88887776543 122223444444 334434478888888888776541 23444
Q ss_pred hhHHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 001632 324 VTYSQLISLSI--KHGKSDEALSLYKDMRSRG---------LIPSNYTCASLLSLYY--KNENYSKALSLFSEMEK 386 (1041)
Q Consensus 324 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 386 (1041)
..+..++.+.. +.+..+++.+.++++.... ..|...+|..+++.++ ..|+++.+.+.++++.+
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555443 4566677777777663211 1334667777776554 56777677766666543
No 382
>PRK10941 hypothetical protein; Provisional
Probab=64.77 E-value=42 Score=34.43 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
++|-.+|.+.++++.|+++.+.++. +.| |+.-++--.-.|.+.|.+..|..-++...+..|.++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3444555555566666666555555 233 344444444445555556666655555555555544
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.51 E-value=1.8e+02 Score=30.19 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEE----GIKPGLISYN-IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLS 896 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 896 (1041)
..+-.....|++-|+-+.|.+.+.+..++ |.+.|++-+. .+.-.|....-..+-++..+.+.+.|...+...-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 35566788999999999999988776554 7777775543 234445555567777788888888887776554222
Q ss_pred H-HHHH-HhcCCHHHHHHHHHHHHH
Q 001632 897 L-VQAY-TEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 897 l-~~~~-~~~g~~~~A~~~~~~~~~ 919 (1041)
. -..| ....++.+|-.+|-+.+.
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 2 2223 456789999888877664
No 384
>PRK09687 putative lyase; Provisional
Probab=64.37 E-value=1.8e+02 Score=30.16 Aligned_cols=137 Identities=10% Similarity=0.037 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG-LYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
++..+-...+.++++.++ .+|...+-.+.+. +|.......+.++.+.+ +...+...+..+.. .+|.......
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 455566666777777765 5677777777653 45445555555565543 24566666666664 3566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 971 (1041)
+.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...++++
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 778888877 45666666666532 2 234677788888884 788888888763 44666555555444
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.38 E-value=12 Score=22.53 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
+..++..+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 386
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.94 E-value=1.8e+02 Score=29.26 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001632 907 YSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMA-EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFE 985 (1041)
Q Consensus 907 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 985 (1041)
..+-++.++++.+.+ +.+...|.+.-......|+.. .=+++.+.|+.. -..+-..|..=-+.+..-++++.-+.+..
T Consensus 94 L~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 444455555555542 444455555444444455554 455555555542 12233344444445555555555555555
Q ss_pred HHHhccCChHHHHHH
Q 001632 986 EVRESSESDKFIMSA 1000 (1041)
Q Consensus 986 ~~~~~~~~~~~~~~~ 1000 (1041)
++.+...-|..+++.
T Consensus 172 ~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHhhhccchhhe
Confidence 555443333334433
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.02 E-value=85 Score=31.80 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 001632 220 ACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFV 299 (1041)
Q Consensus 220 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 299 (1041)
.+..=|++++..++|.++..+.-+--+.--+.-......-|-.|.|.+....+.++-..-.+.--.-+...|..++..|.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34455899999999999988877665543334455667777788899998888888777665322223334777766665
Q ss_pred c-----CCCHHHHHHHH
Q 001632 300 K-----GSLLEEALKTF 311 (1041)
Q Consensus 300 ~-----~g~~~~A~~~~ 311 (1041)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 5 48999998887
No 388
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.99 E-value=97 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 001632 292 TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRG 353 (1041)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 353 (1041)
-+-+.++...|++++|..+.+.+. .||...|.+|.. .+.|-.+++..-+.+|...|
T Consensus 43 lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 43 LIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334455666777777777665552 567777666633 35666666666666665554
No 389
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=3.2e+02 Score=31.61 Aligned_cols=157 Identities=12% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCC---CCChhHHHHHHHHHHhcCCHHHH
Q 001632 872 YNEVEKLIQAMQR-DGFSPNSFTYLSLVQA--YTEAAKYSEAEETINSMQKQGI---PPSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 872 ~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
-++...++.-+.. ...+++...+.+|.-+ |+-.-+-+-+-.+++.+.+++- .....-|-.|+-++...|+-+.+
T Consensus 485 ~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~ 564 (878)
T KOG2005|consen 485 REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESV 564 (878)
T ss_pred hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchH
Confidence 3555545555443 3344455555554433 3334455667777777776432 22233455555555556655555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHH--HHHHHHHHhccCChHHH---HHHHHHHHHhcCCh---hHHH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLK--GYMDHGYIEEG--INLFEEVRESSESDKFI---MSAAVHLYRYAGKE---HEAN 1015 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A--~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~---~eA~ 1015 (1041)
..+.+....-+ .|=......++. +|.-.|+.-.- ...+... .....+... +..++-++...|+- +-+.
T Consensus 565 d~~~e~~~~i~-~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~c-gE~~~~~e~~~~~avLgiAliAMgeeig~eM~l 642 (878)
T KOG2005|consen 565 DAVVETIKAIE-GPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFC-GEHDADLESEQELAVLGIALIAMGEEIGSEMVL 642 (878)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHhhccccCceEEechhhhhhhc-CCCccchhhhccchhhhhhhhhhhhhhhhHHHH
Confidence 55555544421 222233344444 34455664443 2222221 112223344 66677778888875 3455
Q ss_pred HHHHHhhccCccchh
Q 001632 1016 DILDSMNSVRIPFMK 1030 (1041)
Q Consensus 1016 ~~~~~~~~~~~~~~~ 1030 (1041)
..+..|..-|-|-++
T Consensus 643 R~f~h~l~yge~~iR 657 (878)
T KOG2005|consen 643 RHFGHLLHYGEPHIR 657 (878)
T ss_pred HHHHHHHHcCCHHHH
Confidence 666666666655444
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.52 E-value=1.1e+02 Score=33.45 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSF--TYLSLVQAY--TEAAKYSEAEETINSMQKQ 920 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 920 (1041)
+......+++..|.++|..+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445788888888888888876 555554 344455555 3567788888888887764
No 391
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.51 E-value=2.4e+02 Score=30.10 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 001632 872 YNEVEKLIQAMQRDGF----SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATR 947 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 947 (1041)
.++|.+.|++....+. ..+......+.....+.|+.++-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5778888888887422 33444555555556677776655555554443 3566777888888888889888888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHH----HHhccCChHHHHHHHHHH----HHhcCChhHHHH
Q 001632 948 VYNESLAAG-IIPDLACYRTMLKGYMDHGYI--EEGINLFEE----VRESSESDKFIMSAAVHL----YRYAGKEHEAND 1016 (1041)
Q Consensus 948 ~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~----~~~~~~~~~~~~~~l~~~----~~~~g~~~eA~~ 1016 (1041)
+++..+..+ +++.. . ..++.++...+.. +.+..++.. +.+..+.+...+..++.. ++.....++..+
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 888888743 44433 2 2344444434433 777777766 444555443333444443 333445555555
Q ss_pred HHHHh
Q 001632 1017 ILDSM 1021 (1041)
Q Consensus 1017 ~~~~~ 1021 (1041)
+++.-
T Consensus 301 f~~~~ 305 (324)
T PF11838_consen 301 FFEDK 305 (324)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 55443
No 392
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.00 E-value=12 Score=38.58 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=80.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHH
Q 001632 868 AAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 868 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 946 (1041)
..|.+++|+++|...++. -++....|.--.+++.+.++...|+.-+....+ ++||.. .|..-..+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 467788888888888775 355566676777888888888888888888887 446543 5555556666688999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 947 RVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 947 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+.++...+.++.+....| +-...-..+..++-...+++.++
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 999998887665544433 32333344555555555555444
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.57 E-value=23 Score=26.61 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
++..++++.+.. .+.|-...-.++.+|...|++++|.++++.+.+
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444433 234444445555666666666666666655543
No 394
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.23 E-value=2.8e+02 Score=30.63 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccC--ChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSE--SDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
.+-.|..+|+-.|++++|...+..+....+ .++.+....+.+=...|+...|+..+++-.
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 445667788899999999999977666554 334444444555557899999999888743
No 395
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.08 E-value=18 Score=21.63 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
..+...+...|++++|+..+++..+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444555555555555555443
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.59 E-value=3.8e+02 Score=31.89 Aligned_cols=252 Identities=6% Similarity=-0.057 Sum_probs=114.9
Q ss_pred CcccHHHHHHHHHHHhhcCC-----chhHHHHHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHH
Q 001632 611 TDDNFSKREKILKLLLHTAG-----GSSVVSQLICKFIRDGMRLTFKFLMKLG--YILDDEVTASLIGSYGKHQKLKEAQ 683 (1041)
Q Consensus 611 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 683 (1041)
...+.+.|...+..+..... ....+..++......+...++....... ...+......-+......++.+.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 34556777777776543321 1112333333333332233333322221 1123334444444444666776666
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCC
Q 001632 684 DVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNL 763 (1041)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 763 (1041)
..+..+.........-.--+.+++...|+.++|...|..+... .+|..++.+- +.|..-. .....
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~-~Lg~~~~--------~~~~~ 397 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQ-RLGEEYP--------LKIDK 397 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHH-HcCCCCC--------CCCCC
Confidence 6666655333333333444566656667777777777776431 1233322211 1121100 00000
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 764 DLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLL 843 (1041)
Q Consensus 764 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 843 (1041)
.+. .. ..... ...+.++..+...|....|...+..+... .+..-...+...-.+.|..+.+...
T Consensus 398 ~~~--~~----~~~~~-------~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 398 APK--PD----SALTQ-------GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred CCc--hh----hhhcc-------ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 000 00 00000 12223333445567777777777766653 2344444555555566777766665
Q ss_pred HHHHHHcCCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001632 844 FSEMQEEGIK--PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFT 893 (1041)
Q Consensus 844 ~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 893 (1041)
.......+.. -=+..|...+..+.+.-.++.++-.---.+++++.|+..+
T Consensus 462 ~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 462 TIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 5432211000 0012355666666666666666544444456667776543
No 397
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.86 E-value=9.9 Score=39.20 Aligned_cols=87 Identities=21% Similarity=0.112 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLA-CYRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 979 (1041)
....|.+++|++.+...++.+ ++....|.....++.+.+....|++-|...++ +.||.. -|..=..+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 345788999999999999975 56666788888999999999999999999887 567643 34333344556799999
Q ss_pred HHHHHHHHHhc
Q 001632 980 GINLFEEVRES 990 (1041)
Q Consensus 980 A~~~~~~~~~~ 990 (1041)
|...+..+.+.
T Consensus 201 aa~dl~~a~kl 211 (377)
T KOG1308|consen 201 AAHDLALACKL 211 (377)
T ss_pred HHHHHHHHHhc
Confidence 99999998774
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.16 E-value=53 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 001632 933 LSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 933 ~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.-++.+.|++++|.++++.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344445555555555555444
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.65 E-value=1.8e+02 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.++.+..+.|+.++|.+.|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555556666666666665543
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=2.3e+02 Score=28.81 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HH
Q 001632 856 LISYNIIINVYAAAGLYNEVEKLIQAMQR----DGFSPNSFTYL-SLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HV 929 (1041)
Q Consensus 856 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~ 929 (1041)
...+..+..-|++.++.+.+.++..+..+ .|.+.|..... -|.-.|....-+++-++..+.|.++|..-+.. -|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 35567788899999999999988877654 37777765433 34455666777888999999999988554332 23
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001632 930 NHLLSA-FSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 930 ~~l~~~-~~~~g~~~~A~~~~~~~~~ 954 (1041)
...-.. +....++.+|-.++-+.+.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 222222 2334577888888777654
No 401
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.25 E-value=1.6e+02 Score=26.80 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 001632 257 NFMLSSLHKKSYHRKVIDLWRQM 279 (1041)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m 279 (1041)
|.++.-....+.+...+.+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 44444444444444444444444
No 402
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.56 E-value=3.4e+02 Score=31.74 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=71.5
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCCCcccHH--H-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001632 833 KAGKTHEASLLFSEMQEE--GIKPGLISYN--I-----IINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTE 903 (1041)
Q Consensus 833 ~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--~-----l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 903 (1041)
+-|+-++|+...-.+.++ .+.||..... + +...|...+..+.|.+.|++.-+ +.|...+-..+...+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 347778888887777664 3356654321 1 11223344556677788877765 56665553333333333
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001632 904 AAK-YSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGIN 982 (1041)
Q Consensus 904 ~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 982 (1041)
.|. ++.-+++ ..-| ..|...+.+.|..++-.++++-. + .+.+-.-.+++.+|++
T Consensus 333 aG~~Fens~El----q~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGEHFENSLEL----QQIG--------MKLNSLLGRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhhhccchHHH----HHHH--------HHHHHHhhccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHH
Confidence 332 2222222 1111 11233445666665555544432 1 2233334566777777
Q ss_pred HHHHHHhccCChHHHHHHH
Q 001632 983 LFEEVRESSESDKFIMSAA 1001 (1041)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~l 1001 (1041)
..+.+.+..||.-..-+.+
T Consensus 388 Aae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHHHhccCCceehHHHHH
Confidence 7777777666654433333
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.16 E-value=1.3e+02 Score=30.30 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK-AGKTHEASLLFSEMQE 849 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 849 (1041)
.+.+.+.+++..+.++++...+...+..=.|.|..+|-. -|....+.+++..+.+
T Consensus 10 laeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 10 LAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 556777888888888888777666666666666666643 2444455555555444
No 404
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.14 E-value=97 Score=32.22 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=78.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--hhHHHHHHHHHHhcCC
Q 001632 869 AGLYNEVEKLIQAMQRD--GFSPNS--FTYLSLVQAYTEAAKYSEAEETINSMQKQGI-PPS--CTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~--g~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~ 941 (1041)
.|+...-..-++.|+-. .-.|+. .+|.-=++-|.+..++..|...|.+-++... .|| .+.|++...+-...|+
T Consensus 55 ~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N 134 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN 134 (390)
T ss_pred CCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH
Confidence 34444444444554432 124443 3455667778888999999999988886432 243 3568888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 942 MAEATRVYNESLAAGIIPDL-ACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+..|+.=+...++ +.|+. .+|--=..++.....+.+|.++.+...+
T Consensus 135 yRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 135 YRSALNDCSAALK--LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHh--cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999988887 45643 2332223456677788888888888644
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.28 E-value=66 Score=32.74 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccC------ChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSE------SDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
..|..-|++.|++++|+.+|+.+..... ....++..+..++.+.|+.++.+.+.=+|..
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3456677788888888888888754322 2345666777888888888888877766643
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.25 E-value=29 Score=37.81 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCC
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLS-LVQAYTEAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGL 941 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 941 (1041)
+-....++++.|+.++.+.++ ..|+...|-. -..++.+.+++..|+.=+..+++.. |+. ..|.--+.++...+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 344455666666666666666 3454444332 2355666666666666666666643 332 233334444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001632 942 MAEATRVYNESLAAGIIPDLACYRTMLK 969 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 969 (1041)
+.+|...|+.... +.|+.....-++.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 6666666666554 4454444433333
No 407
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.69 E-value=2.8e+02 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 001632 429 KTYLAMAQVHLTSRNVEKA 447 (1041)
Q Consensus 429 ~~~~~li~~~~~~~~~~~A 447 (1041)
.+|..|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3456666666666665543
No 408
>PRK10941 hypothetical protein; Provisional
Probab=52.48 E-value=98 Score=31.81 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.|-.+|.+.++++.|+...+.++..+ |.++.-+.-.+..|.+.|.+..|..=++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45567889999999999999999864 455566778888899999999999999988764
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.34 E-value=59 Score=26.97 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 937 SKAGLMAEATRVYNESLAA----GIIPD----LACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
.+.|++.+|.+.+.+..+. +.... ....-.+...+...|++++|+..++++......
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3567777776666555432 11110 112222334455667777777777766654433
No 410
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.31 E-value=71 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 966 TMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 966 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
.+.-++.+.|++++|..+.+.+.+..|.|.-+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678899999999999999999888876443
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.30 E-value=1.4e+02 Score=25.29 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 001632 268 YHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYK 347 (1041)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 347 (1041)
..++|..+.+-+...+. -...+--+-+..+...|++++|. ..- .....||...|.+|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 34555555555544432 22223334445556666666661 111 112255666665553 245666666666666
Q ss_pred HHHhCC
Q 001632 348 DMRSRG 353 (1041)
Q Consensus 348 ~m~~~~ 353 (1041)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 655443
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=51.93 E-value=4.8e+02 Score=31.06 Aligned_cols=118 Identities=7% Similarity=0.021 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 441 SRNVEKALDVIELMKSRN-MWLSR--FAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAK 517 (1041)
Q Consensus 441 ~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 517 (1041)
..+.+.|..++..+.... ..+.. .+...+.......+...++...+....... .+......-+....+.++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHH
Confidence 445577777777664432 22111 123333333333322445555555433221 24444455555556788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 001632 518 GFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGK 560 (1041)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 560 (1041)
..+..|..... -...-.-=+.+++...|+.++|...|..+..
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887754322 1222333355666667888888888888643
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.62 E-value=39 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+++..++++.++. ...|......++..|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~-~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRA-QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555555555543 455666677788999999999999999998754
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.35 E-value=1e+02 Score=26.94 Aligned_cols=53 Identities=11% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
|..+-+..+...++-|++..-..-+++|.+.+|+.-|+.+|+.+..+.++.-.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 44455555566667777777777778888888888888888877766555433
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.30 E-value=74 Score=31.20 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP---SCTHV--NHLLSAFSKAGLMAEATRVYNESLAAGIIPDL 961 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 961 (1041)
+.++..-++.|+--|.-...+.+|-+.|..-. |+.| |...+ ..-|......|++++|++....+--.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 56666677777766665555555555554433 3433 23333 34456677888888888888875322122232
Q ss_pred HHHHHH----HHHHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHH
Q 001632 962 ACYRTM----LKGYMDHGYIEEGINLFEEVRE-SSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 962 ~~~~~l----~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~ 1005 (1041)
..+--| +--+.+.|..++|+++++.=.. ..+.++..+..+=.++
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 111111 2234577888888888877333 3344444555544443
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.20 E-value=3.2e+02 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 001632 970 GYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 970 ~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
.+.+.|+.++|...|+++...
T Consensus 374 lL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 374 LLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHhCChHHHHHHHHHHHHh
Confidence 344555555555555555443
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=67 Score=31.64 Aligned_cols=86 Identities=10% Similarity=-0.037 Sum_probs=69.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDL-ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
-|....+++.|+.-|-+.+. +.|.. ..|..=+-.+.+..+++.+.+--.++.+..|+..-..+.++..+.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34456678899998888887 56765 4555555567788999999999999999888888888889999999999999
Q ss_pred HHHHHHHhh
Q 001632 1014 ANDILDSMN 1022 (1041)
Q Consensus 1014 A~~~~~~~~ 1022 (1041)
|...+.+..
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 999999873
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.75 E-value=4.1e+02 Score=29.67 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 001632 889 PNSFTYL-SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF---SKAGLMAEATRVYNESLAAGIIPDLACY 964 (1041)
Q Consensus 889 ~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 964 (1041)
|+..|+. .++.-+.+.|-+.+|...+..+.... +|+...|..++..= ..+| +.-+.++|+.|+.. +-.|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHH
Confidence 4444432 33444445555555555555555532 34444444444321 1222 44555555555432 22344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
...+.--...|..+-+-.++.++..
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 4444333345555555555555443
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.79 E-value=2.1e+02 Score=26.03 Aligned_cols=81 Identities=7% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHH
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGC-----EPDEIACGTMLCTYARWGN-HKAMLTFYSAVKERGIVPSTAVFNF 258 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ 258 (1041)
..+.++.-+.-.+++.....+++.+..... ..+...|+.++.+..+..- ---+..+|..|++.+..++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666666677766666666532110 1223345555555544443 3334455555555555555555555
Q ss_pred HHHHHHh
Q 001632 259 MLSSLHK 265 (1041)
Q Consensus 259 li~~~~~ 265 (1041)
++.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 5555443
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.61 E-value=2.8e+02 Score=27.42 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001632 828 VSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 907 (1041)
+..|.+.-++.-|....+++.+ +.--...+--|.+..+-+--.++++-....++.-+..-..+++ +...|+.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Q ss_pred HHHHHHHHHHHHC-------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 908 SEAEETINSMQKQ-------------GIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 908 ~~A~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 967 (1041)
..|+..++.-... + .|.+.....++..+ ..+++++|.+++.++.+.|+.|....-+..
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d-~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCD-EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccC-CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 421
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=48.48 E-value=3e+02 Score=27.77 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEE-G-IKPGLISYNIIINVYAA-AGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 884 (1041)
++....++++++++.....++.+. + ...+..-.|.|--+|-. .|....+...+..+.+
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ 67 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 67 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHH
Confidence 445566778888888888887764 3 35566666666666643 4666777777776544
No 422
>PRK09857 putative transposase; Provisional
Probab=48.07 E-value=89 Score=32.66 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 966 TMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 966 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
.++.-....++.++-..+++.+.+..+.......+++.-+...|..+++.++..+|...|++.-.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 44443345666666666666665555555556667777777788778888889999888887443
No 423
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.37 E-value=5.8e+02 Score=30.71 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=24.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 001632 668 SLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710 (1041)
Q Consensus 668 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 710 (1041)
.++..+.++|+++.|.++.++....++.-...+.....++.+.
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~ 372 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKN 372 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcC
Confidence 4556667888888888888776533222222222235555554
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.28 E-value=3.5e+02 Score=28.11 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY---NIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
..|.-+--+.|+..+|.+.|+.+.+. .|=...+ ..|+.++....-+.+...++-+..+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555555778888888888887664 2311112 2355666555555555555544433
No 425
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.35 E-value=1.8e+02 Score=24.40 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh
Q 001632 436 QVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAG 498 (1041)
Q Consensus 436 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 498 (1041)
..+.+.|+++.|..+.+.+ ..||...+.+|... +.|-...+..-+..+..+|.|...
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg~p~lq 103 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASGDPRLQ 103 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCCCHHHH
Confidence 3455566666666555443 35555555554433 334444444444444444444333
No 426
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.26 E-value=3.5e+02 Score=27.89 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHhH
Q 001632 465 AYIVMLQCYVMKEDLGS 481 (1041)
Q Consensus 465 ~~~~ll~~~~~~~~~~~ 481 (1041)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 56677777777776553
No 427
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.35 E-value=1.3e+02 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=12.2
Q ss_pred HHHhcCChHHHHHHHHHHHhccCChH
Q 001632 970 GYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 970 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
.|.+.|+-+.|.+-|+.-....|.+.
T Consensus 81 Lys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCccch
Confidence 34444555555555544444444443
No 428
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.11 E-value=3.8e+02 Score=29.78 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.4
Q ss_pred HHHHHhcCChHHHHHH
Q 001632 330 ISLSIKHGKSDEALSL 345 (1041)
Q Consensus 330 i~~~~~~g~~~~A~~~ 345 (1041)
+...+..|+.+-+..+
T Consensus 139 Lh~A~~~~~~~~v~~L 154 (413)
T PHA02875 139 LHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3344455665443333
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.08 E-value=72 Score=30.94 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
.|++..|..++.++...|+.++|....+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555666666555555555555
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.08 E-value=86 Score=30.39 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=33.9
Q ss_pred hcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001632 160 QKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEA 212 (1041)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 212 (1041)
..+.+......+|+.+-....|+...|..++.++...|+.++|.++..++...
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555544456677777777777777777777777777776653
No 431
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.75 E-value=51 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 001632 941 LMAEATRVYNESLA 954 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~ 954 (1041)
+.+.|..+|++++.
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 44455555555544
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.14 E-value=4.9e+02 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC
Q 001632 835 GKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 835 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 870 (1041)
++.+.|...+..|.+.|..|..+.-..++.++...|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 556666666666666665555444444444444443
No 433
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.34 E-value=5.1e+02 Score=28.85 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=100.1
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCC--ccc-----HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHH
Q 001632 831 YGKAGKTHEASLLFSEMQEE-GIKPG--LIS-----YNIIINV-YAAAGLYNEVEKLIQAMQRDGFSPNSFTY--LSLVQ 899 (1041)
Q Consensus 831 ~~~~g~~~~A~~~~~~m~~~-g~~p~--~~~-----~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~l~~ 899 (1041)
-.-.|+..+|++-+..|.+- .-.|. ... ...++.. +...+.++.|...|....+.--.-|...+ ..+..
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 34578999999999888774 11233 211 1223333 34568899999998887764333343333 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHH-HHH
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPS-CT-----HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL----ACYR-TML 968 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~-~l~ 968 (1041)
.|.+.|+.+.-.++++.+--.+-.+. .. .+...+-...+.|++.||.....+-++-...-|. .++- .|.
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 68888877666655555432210111 11 1122223345789999999999998763211121 1222 222
Q ss_pred HHHHhcCChHHHHHHHHHHHh---ccCChHH---HHHHHHHHHHhcCC
Q 001632 969 KGYMDHGYIEEGINLFEEVRE---SSESDKF---IMSAAVHLYRYAGK 1010 (1041)
Q Consensus 969 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~ 1010 (1041)
......|+..++.++..-... +.|+-++ ....+-++|...|+
T Consensus 493 ~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 345567888888877665332 3444332 23344566777776
No 434
>PRK12798 chemotaxis protein; Reviewed
Probab=43.24 E-value=4.8e+02 Score=28.56 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGLISYNIIINVYA-AAGLYNEVEKLIQAMQRDGFSPNS----FTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g~~~ 908 (1041)
.|+..+|.+.|..+.-....+....|..|+.+-. ...+..+|+++|++..-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888999998888866655566666777776643 456788999999887542 2332 22333344457788888
Q ss_pred HHHHHHHHHHHCCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 001632 909 EAEETINSMQKQGIPPSCTH---VNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
++..+-..-... +.-++.. +..+...+.+.++-..- +-+..++.. ++|+ ...|..+.+.-.-.|+.+-|...
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 877665554442 2233322 22333344444422222 224444443 4554 45777777777888999999888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh-----cCChhHHHHHHHHhhccCc
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRY-----AGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~eA~~~~~~~~~~~~ 1026 (1041)
-+++......+ ..-...+.+|.. ..+.++|.+.+..|.....
T Consensus 280 s~~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 280 SERALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 88877654322 222223333332 4567777777777655444
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.96 E-value=1.2e+02 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 902 TEAAKYSEAEETINSMQK----QGIPPS----CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~----~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+.|++.+|.+.+....+ .+.... ....-.++......|++++|++.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677666555555443 211110 12233455666777888888888888764
No 436
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.86 E-value=16 Score=28.94 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=25.3
Q ss_pred hcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 973 DHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
..|+.++|+.+|++....+..-..+-.. .....-.|++|.++.++|...
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHHH
Confidence 3466777777777754421111000000 233445677788887777653
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.01 E-value=1.9e+02 Score=23.53 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=4.9
Q ss_pred CChHHHHHHHHHH
Q 001632 337 GKSDEALSLYKDM 349 (1041)
Q Consensus 337 g~~~~A~~~~~~m 349 (1041)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 438
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=41.90 E-value=46 Score=26.44 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=37.3
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 782 KLHFAASIYERMLVYGRGRKLDKALEMFNTARSL---GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
.++.|.+..++.+-+...|..++|+..|+..+.. |+..... ..+....+++|.++-++|..
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 3566666666666667777888888777776542 2221111 12344457778887777765
No 439
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.30 E-value=6.7e+02 Score=29.65 Aligned_cols=93 Identities=6% Similarity=-0.072 Sum_probs=61.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcc
Q 001632 667 ASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVN-TLTNH 745 (1041)
Q Consensus 667 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~ 745 (1041)
.++.-+|+-.|+....++++.-.......|+.-+-...-++.-+.+++....+..-+.+. ..|....-.++.- .+|..
T Consensus 541 ~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 541 YTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAG 619 (929)
T ss_pred HHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcC
Confidence 456667888888877777777756555667777777777788888888888877777665 4444443333322 23333
Q ss_pred CCHHHHHHHHHHhcc
Q 001632 746 GKHEQAEIIIHNSFQ 760 (1041)
Q Consensus 746 g~~~~A~~~~~~~~~ 760 (1041)
.-..+|..+++.|..
T Consensus 620 tG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 620 TGLKEAINLLEPLTS 634 (929)
T ss_pred CCcHHHHHHHhhhhc
Confidence 335778888887766
No 440
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.86 E-value=49 Score=36.17 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 001632 828 VSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNI-IINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAA 905 (1041)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 905 (1041)
++-+.+.++++.|..++.+.++. .||...|-. =..++.+.+++..|+.=+.+.++. .|+ ...|.--..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 45566778899999999999986 677655533 347888999999998877777774 243 233444456777788
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 001632 906 KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 938 (1041)
.+.+|...|+.... +.|+..-..-.++-+-.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 88999999988887 56877766666555433
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.69 E-value=2.7e+02 Score=30.57 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=42.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 001632 828 VSFYGKAGKTHEASLLFSEMQEEGIKPGLI--SYNIIINVYA--AAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 885 (1041)
+..+-..+++..|.++|+.+..+ +.++.. .+..+..+|. ..-++++|.+.|+.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999987 544444 3445556655 456789999999988764
No 442
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.43 E-value=3.9e+02 Score=28.90 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHH--------HHHHHcCCHHHHHHHHHHHHH-cCCCC
Q 001632 821 EKAYMNLVS--FYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII--------NVYAAAGLYNEVEKLIQAMQR-DGFSP 889 (1041)
Q Consensus 821 ~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~m~~-~g~~~ 889 (1041)
+.+|.-++- .+..++++++|.++-+.....-..-|..+++.+. .+|...|+...-...+..... +...-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 444444333 3344678888888877665431222444544322 223345665555555544433 11222
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH-------HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 890 N----SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH-------VNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 890 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
| ....|.|+..|...+.++.|..+.....- |.... ...++...+-++++..|.+.+-.++.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~----pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY----PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC----ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 2 33456666777777888888777665443 32221 12334445556777788777777665
No 443
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.05 E-value=7.4e+02 Score=29.53 Aligned_cols=25 Identities=36% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 326 YSQLISLSIKHGKSDEALSLYKDMR 350 (1041)
Q Consensus 326 ~~~li~~~~~~g~~~~A~~~~~~m~ 350 (1041)
+...|..+...|++++|..+.-.|.
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHh
Confidence 4444444455555555555544443
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=4.1e+02 Score=26.55 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
.++...|++-++++.-.+++.. .+.+...|-.-..+....-+.++|.+-|..+++
T Consensus 238 QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3344455555555555555553 334444555555555555555555555555555
No 445
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=6.5e+02 Score=28.79 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhc
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT-EAAKYSEAEETINSMQKQG---IPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~ 939 (1041)
..+.+.|-+..|.+.-+-+.+....-|......+|+.|+ ++.+|.-.+++++.....+ .-|+...-..|+..|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 334455556666655555554322224444555555543 4555555555555553311 124433333444444443
Q ss_pred CC---HHHHHHHHHHHH
Q 001632 940 GL---MAEATRVYNESL 953 (1041)
Q Consensus 940 g~---~~~A~~~~~~~~ 953 (1041)
.. ...|...+.+++
T Consensus 430 ~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQAL 446 (665)
T ss_pred CChhhHHHHHHHHHHHH
Confidence 33 334444444443
No 446
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.17 E-value=2.7e+02 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=12.3
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q 001632 1002 VHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 1002 ~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
+.++...|+.+||++.++..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566677777777776653
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.78 E-value=1.8e+02 Score=34.62 Aligned_cols=161 Identities=10% Similarity=0.104 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA 904 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 904 (1041)
-++|..+.|.|..+-|+.+.+.-..+ ...+...|+++.|++.-+++ .|..+|..|+..-..+
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 35677778888888887766543222 12246789999998876654 4778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001632 905 AKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLF 984 (1041)
Q Consensus 905 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 984 (1041)
|+..-|+..|+...+ |+-|--.|.-.|+.++-.++.+.+.. +.|.... ...+ .-.|++++=.+++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~~--~qna-lYl~dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATGQ--FQNA-LYLGDVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHHH--HHHH-HHhccHHHHHHHH
Confidence 999999999998775 34455567778998888877776643 3343221 1111 2357788877777
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 985 EEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 985 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
+..-. .| ..|. .-...|.-++|.++.++......
T Consensus 751 ~n~g~-~~---layl----ta~~~G~~~~ae~l~ee~~~~~~ 784 (1202)
T KOG0292|consen 751 ENGGQ-LP---LAYL----TAAAHGLEDQAEKLGEELEKQVP 784 (1202)
T ss_pred HhcCc-cc---HHHH----HHhhcCcHHHHHHHHHhhccccC
Confidence 66422 11 1111 12236888899999988877443
No 448
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.73 E-value=3.7e+02 Score=28.24 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 001632 905 AKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK------AGLMAEATRVYNESLAAGIIPDLA-CYRTMLKGYMDHGYI 977 (1041)
Q Consensus 905 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 977 (1041)
+-+++++.++++...++ .|.+......|.++.. .-+|..-..+|+-+.. +.|+++ +.|--+..-...| .
T Consensus 270 ~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~G-p 345 (415)
T COG4941 270 ALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREG-P 345 (415)
T ss_pred HHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhh-H
Confidence 34577777887777776 3777666655544422 2277777788887776 455543 3443333322333 5
Q ss_pred HHHHHHHHHHHhc--cCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 978 EEGINLFEEVRES--SESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 978 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+.++.+.+.+.+. ...-......-+.++.+.|+.+||..-+++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 6777777776654 222223334457889999999999999998654
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.64 E-value=2.3e+02 Score=23.28 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 001632 486 FQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDF-DEELYRSVMKIYCKEGMV 548 (1041)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~ 548 (1041)
++.....++.|......+...+...|+++.|++.+-.+.+..... +...-..|+..|.-.|.-
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 333444455566666667777777777777777776666553332 334445555555555543
No 450
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.50 E-value=6.8e+02 Score=28.64 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=82.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCc---------c---cHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCC--
Q 001632 832 GKAGKTHEASLLFSEMQEEGIKPGL---------I---SYNIIINVYAAAGLYNEVEKLIQAMQR-------DGFSPN-- 890 (1041)
Q Consensus 832 ~~~g~~~~A~~~~~~m~~~g~~p~~---------~---~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~~~-- 890 (1041)
....-+++|...|.-.+.. ..|+. . +...+...+...|+.+.|..+.++.+= ..+.|.
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3445677888888777665 23332 1 233445567777888877777666431 122222
Q ss_pred -----------HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 001632 891 -----------SFTYLSL---VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS-KAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 891 -----------~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 955 (1041)
..-|.+| +....+.|-+.-|.+..+.+...+..-|+.....+|+.|+ ++.++.=-+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1122221 2334566667777777666666543335555566666553 345555555555555321
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcc
Q 001632 956 ---GIIPDLACYRTMLKGYMDHGY---IEEGINLFEEVRESS 991 (1041)
Q Consensus 956 ---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 991 (1041)
..-|+-..-.+++.-|.+... -+.|...+.++....
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 122343333344444443332 445555555555443
No 451
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.31 E-value=5e+02 Score=27.09 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHcC-CHHHHHH-HHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH--------
Q 001632 861 IIINVYAAAG-LYNEVEK-LIQAMQRDGFSPNSFT-YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHV-------- 929 (1041)
Q Consensus 861 ~l~~~~~~~g-~~~~A~~-~~~~m~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------- 929 (1041)
.+...+-..| +.-++.+ ..+.+...+...-..- +.+++..-...-..+-..++.+..... +.|-...|
T Consensus 28 ~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~-iq~rvisfeEqv~~ir 106 (399)
T KOG1497|consen 28 LLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEK-IQPRVISFEEQVASIR 106 (399)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHh-cccccccHHHHHHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHH--HHhccCChHHHHHHH
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAG------IIPDLACYRTMLKGYMDHGYIEEGINLFEE--VRESSESDKFIMSAA 1001 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~l 1001 (1041)
-.|+..|-+.++|+.|-+++.-....+ ..--..++--+.++|.+.|+..+|..+..+ +......|.......
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~ 186 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEY 186 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHH
Q ss_pred HHHHHh----cCChhHHHHHHHHhhccCc
Q 001632 1002 VHLYRY----AGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 1002 ~~~~~~----~g~~~eA~~~~~~~~~~~~ 1026 (1041)
--+|.+ .|++-||.+-+-++....+
T Consensus 187 kvc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 187 KVCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.00 E-value=5.8e+02 Score=27.73 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEG--IKPGLISYNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
..+.-+.+-|..+|+++.|.+.+.+..+.- .+-....|..+|.+-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 357778888899999999999988865430 011122344455555667888877777776655
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.76 E-value=5.2e+02 Score=27.11 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQR----DGFSPNSFTYLSLV-QAYTEAAKYSEAEETINSMQKQGI 922 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~ 922 (1041)
.....-|++.||.+.|++.+.+..+ .|.+.|.+-+..-+ -.|....-+.+-++..+.+.+.|-
T Consensus 108 ~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3344456666666666665555433 25555554443322 223333334444444455555543
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.72 E-value=8.4e+02 Score=30.68 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=8.9
Q ss_pred hcCChhHHHHHHHH
Q 001632 1007 YAGKEHEANDILDS 1020 (1041)
Q Consensus 1007 ~~g~~~eA~~~~~~ 1020 (1041)
+.|++++|++-+.+
T Consensus 913 hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 913 HLKRYEKALRHLSA 926 (928)
T ss_pred hhCCHHHHHHHHHh
Confidence 45677777666554
No 455
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.60 E-value=5.6e+02 Score=27.38 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCC
Q 001632 403 YGKLGLYEDAQKTFAETEQLGLLSDEKTYLAM----AQVHLTSRNVEKALDVIELMKSRN 458 (1041)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~A~~~~~~~~~~~ 458 (1041)
+.+.++..-|..+...+.++.+..-..+|.+| |.-..+.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 44556666666666666666554445555544 233334566677777777776654
No 456
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.57 E-value=2.2e+02 Score=23.22 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 343 LSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYED 411 (1041)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (1041)
.++++.+.+.|+- +......+-.+--..|+.+.|.+++..+. +| ..+|...+.++...|.-+-
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 3444555555532 22222222222224455555666655555 32 2245555555555554433
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.40 E-value=6.4e+02 Score=28.06 Aligned_cols=20 Identities=25% Similarity=0.007 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 001632 941 LMAEATRVYNESLAAGIIPD 960 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~~~~p~ 960 (1041)
+.+.|+.++..|++.|..|.
T Consensus 245 d~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 245 DPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 44444444444444444433
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=8.6e+02 Score=29.50 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 803 DKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGK 836 (1041)
Q Consensus 803 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 836 (1041)
..++...+-....--..+...+|.++..|++..+
T Consensus 610 ~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 610 NQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 3444444444443335778889999988887544
No 459
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.29 E-value=31 Score=30.42 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 001632 302 SLLEEALKTFNEMKSTGFAPEEVTYSQLIS 331 (1041)
Q Consensus 302 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 331 (1041)
|.-.+|..+|..|++.|.+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 444455555555555555554 3455544
No 460
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.03 E-value=5.8e+02 Score=28.33 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.8
Q ss_pred HHHHHcCCCCC
Q 001632 521 AHIRKDQVDFD 531 (1041)
Q Consensus 521 ~~~~~~~~~~~ 531 (1041)
+.+.+.|..++
T Consensus 219 ~~Ll~~gad~n 229 (413)
T PHA02875 219 RLFIKRGADCN 229 (413)
T ss_pred HHHHHCCcCcc
Confidence 33344454444
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.19 E-value=6.9e+02 Score=28.06 Aligned_cols=100 Identities=10% Similarity=0.112 Sum_probs=67.9
Q ss_pred CCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-CCCCCChhH
Q 001632 853 KPGLISY-NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT--EAAKYSEAEETINSMQK-QGIPPSCTH 928 (1041)
Q Consensus 853 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~~ 928 (1041)
.|+..++ +.+..-+-+.|-.++|.+.+..+... .+|....|..+|+.-. .+-+...+.+.|+.+.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4566554 45666667777788888888887775 4556666766665432 12236778888888885 45 66677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
|......=...|..+-+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 777666666788888888888776653
No 462
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=9.3e+02 Score=29.48 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCC
Q 001632 838 HEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQR-DGFSPNSFTYLSLVQAYTEAAK 906 (1041)
Q Consensus 838 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~~~g~ 906 (1041)
+.-.+.|.++.+-=-.-|.-++..-..-+...|++..|++++.++.+ .|-.++...|..++..+...|-
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 33444444444421112444555555556667777777777777765 3455666666666666555554
No 463
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.63 E-value=77 Score=31.00 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
..+.|+.+.|.++|.+..+.- +.....|--+...-.+.|+.+.|.+-|++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 456788888899999888852 444567888888888899999999999998874
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.39 E-value=1.6e+02 Score=22.13 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 001632 333 SIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYY-----KNENYSKALSL 380 (1041)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~~~ 380 (1041)
+...|++=+|.++++.+-.....+....+..+|.... +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456666677777776654333334455555555432 45555555544
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.29 E-value=2.6e+02 Score=24.79 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 769 AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEK-AYMNLVSFYGKAGKTHEASLLFSE 846 (1041)
Q Consensus 769 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 846 (1041)
.....+..+....++..=...++--+.|...-+ .+.++|..|.+.|+..... .|......+.+.|++++|.++|+.
T Consensus 48 lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 48 LLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 466
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.89 E-value=67 Score=31.39 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=46.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
...+.|+.+.|.+.|.+.++. .+-....|--+...-.+.|+++.|...|++..+..|+|...
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 455678888888888888773 22246677777777778888888888888888888877543
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.57 E-value=3e+02 Score=30.21 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCC--
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQ-GIPPSCTHVNHLLSAFSKAGLMAEATRVYNE-------SLAAGIIP-- 959 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~p-- 959 (1041)
|.+.|--=.-+..+..-..+..+-.+.+.+. .---+......++..+....++.+-.+..+. .-+.|..|
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------ccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 960 ---DLACYRTMLKGYMDHGYIEEGINLFEEVRE--------SSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 960 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
.-.+.-.|++.++-.||+..|++.++.+.- -.+-...+++.++.+|.-.+|+.+|.+.|..+.
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.02 E-value=1.6e+02 Score=20.73 Aligned_cols=31 Identities=10% Similarity=0.308 Sum_probs=15.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 509 KLDLTEKAKGFIAHIRKDQVDFDEELYRSVM 539 (1041)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 539 (1041)
+.|-..++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555555554443
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.94 E-value=4.5e+02 Score=25.20 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 363 SLLSLYYKNENYSKALSLFSEMEKFKV--------------AADEVIYGLLIRIYGKLGLYEDAQKTFA 417 (1041)
Q Consensus 363 ~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (1041)
+++-.|-+..++.++..+++.|.+..+ .+--.+.|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556666677777777777765322 1222344555556666666666666655
No 470
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.90 E-value=80 Score=32.51 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 859 YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLS 896 (1041)
Q Consensus 859 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 896 (1041)
|+..|..-.+.||+++|++++++..+.|..--..+|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45566666666666666666666666665555555443
No 471
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=32.77 E-value=2.1e+02 Score=22.56 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=41.5
Q ss_pred HhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 972 MDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
..+|-.++|..++..+-...|+.......-+.+|.-.|+..+|.+.+..+.......++
T Consensus 17 vNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~~~~eA~~Lr 75 (79)
T TIGR02498 17 VNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENMDDEEAQLLR 75 (79)
T ss_pred HccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcCCcHHHHHHH
Confidence 35777888888887777766666666666677778888888888888776655444333
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.21 E-value=1.1e+03 Score=29.58 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHH
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE-VEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
+|..+-...+.++.+.+..+ .+..... .++...-...+.++...+..+. +...+..+.+ .+|...-.+.
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~----~l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE----SVAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH----HHHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 44555555555555544322 1222222 3455555566666666665432 3445555544 3566677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
+.++...|....+...+..+++ .++...-...+.++...|. +++...+..+++ .|+...-...+.++.+.+.-
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCC
Confidence 7777777776555444555553 2454555556666766665 456666666664 56677777777777765434
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
..+...+.++.+ .+|..+......++
T Consensus 869 ~~a~~~L~~al~--D~d~~Vr~~A~~aL 894 (897)
T PRK13800 869 PAARDALTTALT--DSDADVRAYARRAL 894 (897)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 567777766655 33555544444444
No 473
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.03 E-value=2.2e+02 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 001632 255 VFNFMLSSLHKKSYHRKVIDLWRQMMD 281 (1041)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (1041)
-|..|+..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366667777777777777777776655
No 474
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.00 E-value=1.7e+02 Score=20.63 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=16.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 195 QVGKIKLAEQTFLEMLEAGCEPDEIACGTML 225 (1041)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 225 (1041)
+.|-..++..++++|.+.|..-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 475
>PHA02707 hypothetical protein; Provisional
Probab=31.55 E-value=17 Score=22.06 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=6.9
Q ss_pred cccchhhhcc
Q 001632 3 SLSSTFIATT 12 (1041)
Q Consensus 3 ~~~~~~~~~~ 12 (1041)
||||.|++.-
T Consensus 7 cl~pvfil~k 16 (37)
T PHA02707 7 CLCPVFILDK 16 (37)
T ss_pred ehhhHHHHHH
Confidence 7777777653
No 476
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.22 E-value=2.1e+02 Score=30.20 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSC----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 971 (1041)
+++..+++.+++. -|+. ..|.+++.++...|.+++.+.+|++++..|..|-......++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4566666666653 3443 246677777777777777777777777777777555555555544
No 477
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.90 E-value=58 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.507 Sum_probs=15.2
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001632 267 SYHRKVIDLWRQMMDKGVAPTDFTYTLVIS 296 (1041)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 296 (1041)
|.-..|..+|+.|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 444455566666666666665 3444443
No 478
>PRK14136 recX recombination regulator RecX; Provisional
Probab=30.34 E-value=6.5e+02 Score=26.29 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
.|-...++..+..+....+-+ .++.+++.++|+.+ +....+++++.+.|+..|..--..+
T Consensus 159 ~~~~~lk~kAL~lLSrReRSe--~ELr~KL~kkG~~e------------------e~IE~VIerLke~gYLDDeRFAesy 218 (309)
T PRK14136 159 RPARSLKGRALGYLSRREYSR--AELARKLAPYADES------------------DSVEPLLDALEREGWLSDARFAESL 218 (309)
T ss_pred ccHHHHHHHHHHHhhcccccH--HHHHHHHHHcCCCH------------------HHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 355555665555555433222 24555555554432 2333455555566665555544444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPP 924 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p 924 (1041)
+... .+.+ .-..|-.++.++|+.+
T Consensus 219 Vr~R--~~kk-Gp~rIrqELrQKGId~ 242 (309)
T PRK14136 219 VHRR--ASRV-GSARIVSELKRHAVGD 242 (309)
T ss_pred HHHH--hhch-hHHHHHHHHHHcCCCH
Confidence 4332 2221 2244556666666543
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.17 E-value=3.8e+02 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHHHcCC
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEE--GIKPGLISYNIIINVYAAAGL 871 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~ 871 (1041)
+|..+|...|++..+.++++..... |-+.=...||..++-..+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 4445555555555555555555443 111112334444444445444
No 480
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.81 E-value=2.5e+02 Score=32.73 Aligned_cols=184 Identities=13% Similarity=0.172 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----H--HHHH---HhcCCH
Q 001632 841 SLLFSEMQEEGIKPGLI---SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLS-----L--VQAY---TEAAKY 907 (1041)
Q Consensus 841 ~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-----l--~~~~---~~~g~~ 907 (1041)
-..+.+|..+=-.|++. +...++-.|....+++.-+++.+.+++- ||..-+.. + .-++ -+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 34566676653345543 3445566677777888888888777652 33221111 0 0111 234677
Q ss_pred HHHHHHHHHHHHC--CCCCChhHHHHHH-------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch
Q 001632 908 SEAEETINSMQKQ--GIPPSCTHVNHLL-------SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG-YI 977 (1041)
Q Consensus 908 ~~A~~~~~~~~~~--~~~p~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~ 977 (1041)
++|+.+.-.++++ .+.||..+....| ..|...+..+.|++.|++..+ ..|....--.+.-.+...| .+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhc
Confidence 8888777777763 2446655432222 223344567888888888876 4665443222222333333 23
Q ss_pred HHHHHHHHH---HHhc--cCChH---HHHHHH---HHHHHhcCChhHHHHHHHHhhccCccch
Q 001632 978 EEGINLFEE---VRES--SESDK---FIMSAA---VHLYRYAGKEHEANDILDSMNSVRIPFM 1029 (1041)
Q Consensus 978 ~~A~~~~~~---~~~~--~~~~~---~~~~~l---~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 1029 (1041)
+.-.++-.- +-.. ..... ..|-.+ ..+-.-++++.+|.+.-+.|-+-.-|.|
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 332222211 1110 01110 111111 1222336788888888888888777755
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.13 E-value=1.3e+03 Score=29.19 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=13.3
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHh
Q 001632 327 SQLISLSIKHG--KSDEALSLYKDMRS 351 (1041)
Q Consensus 327 ~~li~~~~~~g--~~~~A~~~~~~m~~ 351 (1041)
..++.+|++.+ ++++|+.+..++.+
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 34455555555 55555555555544
No 482
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.92 E-value=1.8e+02 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
..|..++..-.+..++.-++..|..
T Consensus 603 TMWAtlAa~Av~~~~m~~~EiAYaA 627 (737)
T KOG1524|consen 603 TMWATLAAVAVRKHQMQISEIAYAA 627 (737)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHH
Confidence 3444444444444444444443333
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.74 E-value=5.6e+02 Score=32.50 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=83.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---Hc--CCCC--CcccHHHHHHHHHHcCCHHHHHHHHH
Q 001632 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ---EE--GIKP--GLISYNIIINVYAAAGLYNEVEKLIQ 880 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~--g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (1041)
++......-.+.....|..|...+-+.|+.++|+..-.+.. ++ |..+ +...|..+.-.+...++...|+..+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 55543333234556678888888889999999887754331 11 2221 22345555555556667777777777
Q ss_pred HHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC---CChhHHHHHHHHHHhcCCHHHHH
Q 001632 881 AMQRD-----G--FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQG----IP---PSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 881 ~m~~~-----g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
+.... | .+|...+++.+-..+-..++++.|.+.++.+.... .+ +....+..+.+.+...|++..|.
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 76542 1 23444455555554555678888888888877521 11 22335566666666666666555
Q ss_pred HHHH
Q 001632 947 RVYN 950 (1041)
Q Consensus 947 ~~~~ 950 (1041)
...+
T Consensus 1120 ~~ek 1123 (1236)
T KOG1839|consen 1120 EHEK 1123 (1236)
T ss_pred HHHh
Confidence 4444
No 484
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.72 E-value=1e+03 Score=27.98 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 360 TCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQ 421 (1041)
Q Consensus 360 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (1041)
.|..|++.+ +.=+.+.-.+++.++.. .. ...+..++++....|--....-+.+.+..
T Consensus 312 ~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 312 KFLRLVRLL-RTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 444444433 33344455555555433 10 34455555555555554444444433333
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.66 E-value=8e+02 Score=26.76 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChH---HHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCCCH
Q 001632 665 VTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKL---VLRSMIDAYAKCGKAEDVYLLYKEATAQ---------GCALDA 732 (1041)
Q Consensus 665 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------g~~~~~ 732 (1041)
....+.+-|..+|+++.|.+.+.++..-+..... .|-.+|..-.-.|+|........+..+. .+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4567788899999999999999997754444433 4555666666778888777777666543 122333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHh
Q 001632 733 VAISILVNTLTNHGKHEQAEIIIHNS 758 (1041)
Q Consensus 733 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 758 (1041)
..+..+...+.+ ++..|.+.+-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 344444443333 666665555443
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.65 E-value=1.3e+03 Score=29.19 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHH
Q 001632 700 LRSMIDAYAKCGKAEDVYLLYKEATAQGCALDA----VAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIK 775 (1041)
Q Consensus 700 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 775 (1041)
|-..+..+-+.+-.+.+.++-...+++ ..+|. .+++.+.+.....|.+.+|...+-..-. .+.-......++.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvi 1062 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 445566666666666666666666654 22222 2445555555566666555444322111 1111234455566
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 776 AMLGAGKLHFAASIYERMLVYGRGRKLDKALE-MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFS 845 (1041)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 845 (1041)
.++..|+++.-.++ .-.|-.++... +++...+.........|+.|-..+...+++.+|--+.-
T Consensus 1063 vLfecg~l~~L~~f-------pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1063 VLFECGELEALATF-------PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHhccchHHHhhC-------CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 66666665543331 11233344444 55555544333334456666666777888887765543
No 487
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.12 E-value=4e+02 Score=26.62 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHhhcccCCCCHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 001632 137 VRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEP 216 (1041)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 216 (1041)
+..+......+.....++.+|..+++...|+.++.++. +...+......++.+ ..+|.+.+|...-+...+ .-
T Consensus 98 ~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~ 170 (226)
T PF13934_consen 98 LELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPD---EL 170 (226)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch---hh
Q ss_pred CHHHHHHHHHHHH----hcCChHHHHHH
Q 001632 217 DEIACGTMLCTYA----RWGNHKAMLTF 240 (1041)
Q Consensus 217 ~~~~~~~li~~~~----~~g~~~~a~~~ 240 (1041)
....+..++..+. +.+..++...+
T Consensus 171 ~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 171 RRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 488
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.78 E-value=1.2e+03 Score=28.45 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=24.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 331 SLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSE 383 (1041)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 383 (1041)
..+...|+.+....+-..|. .|..++..+...+++++|.+++..
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556555555544443 255556666666666666665544
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.26 E-value=5.6e+02 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHhccCCHHHHHHHHHHhh
Q 001632 670 IGSYGKHQKLKEAQDVFKAAT 690 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~ 690 (1041)
+..|.+.|.+++|.++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 344556666666666666644
No 490
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.08 E-value=5.7e+02 Score=24.60 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHH-HHHhcC--ChHHHHH
Q 001632 270 RKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKST--GFAPEEVTYSQLIS-LSIKHG--KSDEALS 344 (1041)
Q Consensus 270 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~g--~~~~A~~ 344 (1041)
++++++-+++.. ++...-.....|++++|..-++++.+. .++.-...|..+.. +++..+ .+-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHhCCC-------CCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHh
Q 001632 345 LYKDMRSRGL-------IPSNYTCASLLSLYY----------KNENYSKALSLFSEMEK 386 (1041)
Q Consensus 345 ~~~~m~~~~~-------~p~~~~~~~li~~~~----------~~~~~~~a~~~~~~~~~ 386 (1041)
++..+..... .|...-.+.+.++-. +.|+++.|++.++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 491
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.07 E-value=1.1e+02 Score=31.46 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCHhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 001632 321 PEEVT-YSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTC 361 (1041)
Q Consensus 321 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 361 (1041)
||..+ |+.-|....+.||+++|+.++++....|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44333 456677777777777777777777776655333333
No 492
>PRK09857 putative transposase; Provisional
Probab=25.95 E-value=4e+02 Score=27.88 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD 960 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 960 (1041)
...|+.++-.++++.+.+. .++......+++.-+...|..++++++.++|+..|+..+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3456666666666666554 233334445566666666766677777777777776654
No 493
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.83 E-value=3.1e+02 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777654
No 494
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.70 E-value=4.7e+02 Score=23.16 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
++..++|..|..+|+-.... .|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33556666666666544433 45556666666677777776665
No 495
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.55 E-value=6e+02 Score=24.28 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHCCCCCChh--HH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 907 YSEAEETINSMQKQGIPPSCT--HV-----NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKG 970 (1041)
Q Consensus 907 ~~~A~~~~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 970 (1041)
.+-|+.+++.+.+.--.|... .. ...+-.|.+.|.+++|.+++++..+ .|+.......+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHH
Confidence 577888888888742222111 11 2334567888888888888888765 3444444443333
No 496
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.51 E-value=7.2e+02 Score=25.18 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=72.9
Q ss_pred CCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-
Q 001632 318 GFAPEEVTYSQLIS-LSIKHGKSDEALSLYKDMRSRGLI---PSNYTCASLLSLYYKNENYSKALSLFSEMEK---FKV- 389 (1041)
Q Consensus 318 ~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~- 389 (1041)
+-.||+..-|..-. .-.+..++++|+.-|++..+.... ..-.+...+|....+.+++++....+.++.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 33566554333211 112445788888888887654322 1234556677778888888888777777643 111
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 390 -AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-----GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMK 455 (1041)
Q Consensus 390 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 455 (1041)
.-...+.+.+++......+.+.-...|+.-.+. +-+..-.|-..|...|...+.+.+...+++++.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 123445566666555555555555555433221 111111223445555555666666666655554
No 497
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.43 E-value=1.4e+03 Score=28.60 Aligned_cols=397 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 001632 471 QCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 471 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
+++.....++.|...|+++..+-+...+.|.++.++ ...++++..+.|-+ ..+++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----------------~~~~~ 537 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRL---------GITLLEKASEQGDP----------------RDFTQ 537 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHh---------hHHHHHHHHhcCCh----------------HHHHH
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCC
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAG 630 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 630 (1041)
|+.-|+.+... ...+-.+..-+-.|...+++++-.+.+.-.+...+
T Consensus 538 ~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 538 ALSEFSYLHGG----------------------------------VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred HHHHHHHhcCC----------------------------------CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 001632 631 GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710 (1041)
Q Consensus 631 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 710 (1041)
+-.....+-+..+ -++++.+........+..-..+...=+.
T Consensus 584 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 584 QHPEISRLRDHLV---------------------------------------YRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred CCCccHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCccc
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001632 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 711 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
-...+-..+|+.+... .+|...+.-.....-.+..+.+.-+.+|
T Consensus 625 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 668 (932)
T PRK13184 625 ISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSFW----------------------------------- 668 (932)
T ss_pred ccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHHH-----------------------------------
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHH--------
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNII-------- 862 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------- 862 (1041)
.|..---.++|+.+.+ .++..+.....-..+..|.++-+.+....+.+. +.--..+-+..
T Consensus 669 --------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 736 (932)
T PRK13184 669 --------SGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEV-SDEITFTESIVEQKVEELM 736 (932)
T ss_pred --------hcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhccchHHHHhhhHHHHH
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHH
Q 001632 863 -----INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT--HVNHLLSA 935 (1041)
Q Consensus 863 -----~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~ 935 (1041)
+.+......++++.+.+.......+ ...+..++.-..-.++.+....+.+.+...-.+.... .....+.+
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (932)
T PRK13184 737 FFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQA 813 (932)
T ss_pred HHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM--DHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
|.-..++++|-+++...-.. .-.+.....-++.+|. -.++-+.|...|...+ .+-.......+..+.-.|+..+
T Consensus 814 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 889 (932)
T PRK13184 814 HLWNRDLKKAYKLLNRYPLD-LLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR---EDALFPRSLDGDIFDYLGKISD 889 (932)
T ss_pred HHHhccHHHHHHHHHhCChh-hhccccchHHHHHHHHHHhcCchhHHHHHHhhcc---ccccCcchhhccccchhccccc
Q ss_pred HHHHHHH
Q 001632 1014 ANDILDS 1020 (1041)
Q Consensus 1014 A~~~~~~ 1020 (1041)
....+++
T Consensus 890 ~~~~~~~ 896 (932)
T PRK13184 890 NLSWWEK 896 (932)
T ss_pred cccHHHH
No 498
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=9e+02 Score=26.24 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--CCCCC--CHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcc--CChH-----HH
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLA--AGIIP--DLACY-RTMLKGYMDHGYIEEGINLFEEVRESS--ESDK-----FI 997 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p--~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~-----~~ 997 (1041)
..|...+-.+|++++|..++.+..- .|.-- ..+.| ---++.|...+||-.|--+-.++..+. .+|. -.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 3566777888999888888877521 11100 01111 111466778888988888888877643 2332 34
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 998 MSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 998 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
|+.++.+..+.+.+-++.+.++.+-..|.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccc
Confidence 66777777788888888888888776654
No 499
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.26 E-value=2e+02 Score=18.74 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=4.9
Q ss_pred HHhcCChHHHHHH
Q 001632 971 YMDHGYIEEGINL 983 (1041)
Q Consensus 971 ~~~~g~~~~A~~~ 983 (1041)
+...|++++|+.+
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3334444444444
No 500
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.95 E-value=3.9e+02 Score=24.45 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCC
Q 001632 239 TFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGS 302 (1041)
Q Consensus 239 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 302 (1041)
.+.+.+++.|++++. --..++..+...++.-.|.++++++.+.+...+..|-...++.+...|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Done!