Query 001632
Match_columns 1041
No_of_seqs 714 out of 3591
Neff 11.1
Searched_HMMs 29240
Date Tue Mar 26 16:45:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001632.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_929-933//hhsearch_pdb/001632hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 313.1 42.8 202 801-1006 388-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 307.9 43.1 93 181-277 82-174 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 227.9 24.7 186 185-370 28-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 226.7 25.1 205 201-405 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 213.3 48.4 206 799-1010 182-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 208.9 42.7 151 820-974 236-386 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 194.8 42.8 199 799-1002 283-490 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 191.4 37.8 237 698-961 238-482 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 184.5 36.3 197 798-998 288-499 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 183.9 38.6 85 673-758 153-237 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=313.05 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 96899999999987899989998999999999429987999999999986999994219999999997199879999999
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (1041)
++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.+ ..+..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6999999999998729-7778999999999997577799999999999868-1343899999999998579999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9998399989998999999999207977999999999877----99988--44899999999923999999999999998
Q 001632 881 AMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ----GIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 881 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
++.+. .+.+..++..++.+|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|++.++++++
T Consensus 466 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99984-88876799999999998189999999999999853234545354999999999999980479999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8987899999999999981488589999999998316883999999999999
Q 001632 955 AGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 955 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.+ +.+..+|..++.+|...|++++|...++++.+..|.++..+..++.+|.
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 38-9973899999999998178999999999997208887489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=307.87 Aligned_cols=93 Identities=11% Similarity=-0.099 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 79999999999999419968999999999984998779899999999995299379999999999789997899999999
Q 001632 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFML 260 (1041)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 260 (1041)
++...|+.++..+.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHH
T ss_conf 89999999999998745834799999999960--899357999999999747699999999987335--45650899999
Q ss_pred HHHHHCCCHHHHHHHHH
Q ss_conf 99980288438999999
Q 001632 261 SSLHKKSYHRKVIDLWR 277 (1041)
Q Consensus 261 ~~~~~~g~~~~a~~~~~ 277 (1041)
..|.+.|++++|..+|+
T Consensus 158 ~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLG 174 (597)
T ss_dssp HHHHHTTCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99998866999999984
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=227.89 Aligned_cols=186 Identities=16% Similarity=0.172 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9999999999419968999999999984998779899999999995299---------3799999999997899978999
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGN---------HKAMLTFYSAVKERGIVPSTAV 255 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~ 255 (1041)
.++.+|+.|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .+.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999802884389999999966899978999999999998289979999999998888999787569999999996
Q 001632 256 FNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIK 335 (1041)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 335 (1041)
|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 29947899999999858999889889999999995
Q 001632 336 HGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYK 370 (1041)
Q Consensus 336 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 370 (1041)
.|+.++|.+++++|.+.+..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 89899999999999994899699999999999830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=226.71 Aligned_cols=205 Identities=17% Similarity=0.222 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HH
Q ss_conf 999999999984998779-89999999999529937999999999978999789999999999980288---------43
Q 001632 201 LAEQTFLEMLEAGCEPDE-IACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSY---------HR 270 (1041)
Q Consensus 201 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~ 270 (1041)
.++.+...+.+.+...++ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHH
T ss_conf 59999999998266689799999999999859899999999999998189987839999999998578304333212499
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999999966899978999999999998289979999999998888999787569999999996299478999999998
Q 001632 271 KVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMR 350 (1041)
Q Consensus 271 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 350 (1041)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998089998999999999998469778899999999972898861110489999998889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 5899988988999999999559988999999998868998799999999999993
Q 001632 351 SRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGK 405 (1041)
Q Consensus 351 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (1041)
+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 6299999999999999985389899999999999994899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=213.33 Aligned_cols=206 Identities=18% Similarity=0.162 Sum_probs=163.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 68968999999999878999899989999999994299879999999999869999-94219999999997199879999
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.|++++|...|+++...+ +.+...+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|+.
T Consensus 182 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 599999999999998559-886799999999999857899999999999852--96878999999999998688999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999983999899989999999992079779999999998779998844899999999923999999999999998898
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 957 (1041)
.++++.+. .+.+...+..++.++.+.|++++|...++++.+.. +.+...+..++.++...|++++|++.++++++. .
T Consensus 259 ~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~ 335 (388)
T 1w3b_A 259 TYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-F 335 (388)
T ss_dssp HHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C
T ss_conf 99999864-99988999999999998699799999999998649-444999999999999848999999999999860-9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78999999999999814885899999999983168839999999999994199
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
+.+...+..++..+.+.|++++|+..++++.+..|.+...+..++.++...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 87399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=208.86 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99989999999994299879999999999869999942199999999971998799999999998399989998999999
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
+..++..+...|.+.|++++|...|+++.+... .+...+..++.++.+.|++++|+..++++.+. .+.+..++..++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 789999999999986889999999999986499-98899999999999869979999999999864-9444999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999207977999999999877999884489999999992399999999999999889878999999999999814
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH 974 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 974 (1041)
.+...|++++|...++++.+.. +.+...+..++.+|...|++++|+..++++++. .+.+...+..+...+...
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHC
T ss_conf 9998489999999999998609-873999977999999868889999999999861-999789998599999874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=194.78 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 68968999999999878999899989999999994299879999999999869999942199999999971998799999
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKL 878 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 878 (1041)
.|++++|...++.+.... +.+...+..+...|...|++++|...+++..+... .+...+..++..+...|++++|+..
T Consensus 283 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp SSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 888999999999986138-67789999999999980779999999999987385-0289999999999986899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHH---CCCHHHHHHHH
Q ss_conf 99999839998999899999999920797799999999987799988------4489999999992---39999999999
Q 001632 879 IQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS------CTHVNHLLSAFSK---AGLMAEATRVY 949 (1041)
Q Consensus 879 ~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~---~g~~~~A~~~~ 949 (1041)
++++.+. .+.+...+..++..+...|++++|...++.+.+.. +.+ ...+..++.++.. .|++++|++.+
T Consensus 361 ~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999987-54677899999999987889999999999999761-233217899999999999986633258889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99998898789999999999998148858999999999831688399999999
Q 001632 950 NESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAV 1002 (1041)
Q Consensus 950 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 1002 (1041)
+++++. .+.+...+..++..+...|++++|...++++.+..|.+...+..+.
T Consensus 439 ~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999875-8555899999999999825799999999999876614688999999
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=191.36 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999249915899999999983999888889999999981599888999999850089887756499999999
Q 001632 698 LVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 698 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
..+..++..+...|++++|...++++...... ...+..+...+...|++++|...+..+....+. +...+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~- 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM- 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHH-
T ss_conf 99999999999878999999999999863864--899999999999888899999999998613867-78999999999-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 91398658999999999883268968999999999878999899989999999994299879999999999869999942
Q 001632 778 LGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI 857 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 857 (1041)
|...|++++|...|+.+.... +.+...+..+...|...|++++|...++++.+.. ..+..
T Consensus 314 ------------------~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 314 ------------------NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp ------------------HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred ------------------HHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
T ss_conf ------------------998077999999999998738-5028999999999998689999999999999875-46778
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 199999999971998799999999998399-989----9989999999992---07977999999999877999884489
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGF-SPN----SFTYLSLVQAYTE---AAKYSEAEETINSMQKQGIPPSCTHV 929 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~ 929 (1041)
.+..+...+...|++++|+..++++.+... .++ ...+..++.++.. .|++++|...++.+.+.. +.+...+
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
T ss_conf 999999999878899999999999997612332178999999999999866332588899999999998758-5558999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999239999999999999988987899
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDL 961 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 961 (1041)
..++.+|...|++++|.+.++++++. .|+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 99999999825799999999999876--6146
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=184.48 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 26896899999999987899989998999999999429987999999999986999994219999999997199879999
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
..|++++|.+.|..+.... +.+..++..+...|...|++++|...+++..+... .+...+..+..++...|++++|+.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8037999999999975459-99879999999999866899999999999998599-977999999999998477999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHC----------CCH
Q ss_conf 999999839998999899999999920797799999999987799-----98844899999999923----------999
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGI-----PPSCTHVNHLLSAFSKA----------GLM 942 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~ 942 (1041)
.++++.+. .+.+...+..++..+...|++++|...++.+.+... ......+..++.++... |++
T Consensus 366 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 366 FFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999873-99985999999999988378899999999998709762446888999998899999976401002247579
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999889878999999999999814885899999999983168839999
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 943 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
++|+..++++++. .+.+...+..++..+...|++++|+..++++.+..|.+....
T Consensus 445 ~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 445 NAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999974-999789999999999985149999999999998689938888
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=183.91 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=33.6
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 82339978999999993217999869999999999924991589999999998399988888999999998159988899
Q 001632 673 YGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAE 752 (1041)
Q Consensus 673 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 752 (1041)
+...|++++|...|+.+....+.+...+..++.+|...|++++|...|.++.... +.+..++..+...+...|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9986899999999999998688976999999999987799999999999999868-898799999999999759999999
Q ss_pred HHHHHH
Q ss_conf 999985
Q 001632 753 IIIHNS 758 (1041)
Q Consensus 753 ~~~~~~ 758 (1041)
..+..+
T Consensus 232 ~~~~~~ 237 (450)
T 2y4t_A 232 SEVREC 237 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
Done!