Query 001633
Match_columns 1041
No_of_seqs 146 out of 314
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:12:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001633.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_929-933//hhsearch_pdb/001633hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhp_A Poly(A) polymerase; tem 1.0 1 1 213.0 29.6 339 33-438 45-401 (530)
2 1q79_A Poly(A) polymerase alph 1.0 1 1 199.8 22.5 336 81-468 95-444 (514)
3 3nyb_A Poly(A) RNA polymerase 1.0 1 1 107.4 22.6 273 7-369 15-299 (323)
4 4e8f_A Poly(A) RNA polymerase 1.0 1 1 99.4 24.2 286 13-388 44-383 (405)
5 4fh3_A Poly(A) RNA polymerase 1.0 1 1 93.7 23.9 275 18-379 21-347 (349)
6 2ikf_A RNA uridylyl transferas 1.0 1 1 87.1 21.6 235 79-366 65-348 (353)
7 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 81.0 25.1 278 10-369 131-438 (464)
8 1px5_A 2'-5'-oligoadenylate sy 1.0 1 1 76.8 20.4 302 15-367 9-331 (349)
9 3hj4_A Minor editosome-associa 1.0 1 1 73.3 20.6 189 9-281 3-197 (384)
10 1r89_A TRNA nucleotidyltransfe 1.0 1 1 69.3 22.5 347 17-498 7-364 (437)
No 1
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=213.03 Aligned_cols=339 Identities=15% Similarity=0.186 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 16899999999998703999888894437741112499403789718840267300302333479963359996275546
Q 001633 33 TKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVDLFVGLPKECF 112 (1041)
Q Consensus 33 ~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k~~~~VDlaV~mP~~~f 112 (1041)
...=++++.+|+.++.+-+.. +. ..+++.... .. ..-..|.++|||++|+. .|+..||+++.+|+.+.
T Consensus 45 ~~~R~~vl~~L~~lv~~w~~~--v~--~~~~~~~~~-~~------~~~~~V~~FGSy~lG~~-~p~SDID~~v~~p~~~~ 112 (530)
T 2hhp_A 45 TANRVQVLKILQELAQRFVYE--VS--KKKNMSDGM-AR------DAGGKIFTYGSYRLGVH-GPGSDIDTLVVVPKHVT 112 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HH--HHTTCCHHH-HH------HTBCEEEEEHHHHHTCC-CTTCCEEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HH--HHCCCCHHH-CC------CCCCEEEEECCCCCCCC-CCCCCEEEEEECCCCCC
T ss_conf 999999999999999999998--87--750787222-03------56835999431035888-99986458994377688
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 74344665124667759999998531599986178711689966015999969888899970999961489767643346
Q 001633 113 HEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLN 192 (1041)
Q Consensus 113 q~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~ 192 (1041)
. +| |+..+++.|++.+...++.+. .+++.|||.+.+. +..|.|.++..+ ..+ .
T Consensus 113 ~-~d------------ff~~l~~~L~~~~~v~~v~~I---~~A~VPIIK~~~~-------gi~vDL~f~~~~---~~~-i 165 (530)
T 2hhp_A 113 R-ED------------FFTVFDSLLRERKELDEIAPV---PDAFVPIIKIKFS-------GISIDLICARLD---QPQ-V 165 (530)
T ss_dssp H-HH------------HHHHHHHHHHTCTTEEEEEEE---TTSSSCEEEEEET-------TEEEEEEEEECS---SSC-B
T ss_pred H-HH------------HHHHHHHHHHCCCCCCEEEEE---CCCCCCEEEEEEC-------CEEEEEEEECCC---CCC-C
T ss_conf 8-99------------999999998548777269995---5886047999989-------972689983156---556-7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCH--------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC-CCCC
Q ss_conf 6568865778899998897652133410374--------899999999821938899999999999974277767-8884
Q 001633 193 LKRNNVRAFNQDGIPRATPKYNSSILEDMFL--------EDNAEYVEKTISRWKELGEALILLKVWARQRSSIYV-HDCL 263 (1041)
Q Consensus 193 P~rnnvR~~~~~~~~~pTP~YNssil~D~~~--------~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~~~~-~ggf 263 (1041)
|...++ -|..+|.++-. ....+++.+...+.++|+++++++|.||+|||++.+ .|++
T Consensus 166 p~~l~l--------------~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~l 231 (530)
T 2hhp_A 166 PLSLTL--------------SDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFP 231 (530)
T ss_dssp CTTCCS--------------CCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSC
T ss_pred CCCCCC--------------CCHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 733478--------------853554256655532010078999999975673778999999999999758874343677
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC------CHHHHHHHHHCCCEEEECC
Q ss_conf 2699999999993103548677499999999999833888787343058999999------8467876651599887489
Q 001633 264 NGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGV------SKEEKLQYKEAFPVVICDP 337 (1041)
Q Consensus 264 ~gf~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~------~~~~~~~f~~~f~vvf~D~ 337 (1041)
||+.|+||++++|| +.+.+|++|+++.++++.+++||. +|+.++...+... +..+..+.++.++| +.+.
T Consensus 232 gg~~~~~LVa~~lQ---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~I-i~P~ 306 (530)
T 2hhp_A 232 GGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPV-ITPA 306 (530)
T ss_dssp CHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCE-ECSS
T ss_pred CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCC
T ss_conf 48999999999982---378999899999999998318999-964740367787565555765577777664358-7889
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 98425234799888999999999999964203--8786201223225665567489995138862101124678614689
Q 001633 338 SAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKYDYCVRLNLRGHTEVHALGFCLDDECWR 415 (1041)
Q Consensus 338 sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lFl~~~~~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~ 415 (1041)
.+..|++++++.++++.+++|.+.+.++|++. +.+.|..+|+ +.+|..+||+++.|..... ....+...|.
T Consensus 307 ~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~-~~~ff~~y~~~l~i~~~~~------g~~~~~~~w~ 379 (530)
T 2hhp_A 307 YPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE-KNDFFFRYKFYLEITAYTR------GSDEQHLKWS 379 (530)
T ss_dssp SSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHCSEEEEEEEEEE------SCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC-CCCHHHHCCEEEEEEEEEC------CCHHHHHHHC
T ss_conf 97775676489889999999999999999987537998799748-8886776686999999756------7878885642
Q ss_pred HHH-HHHHHHHHHHHCCCCCEEEE
Q ss_conf 999-99999999742035432899
Q 001633 416 LYE-QKVHSLLNQGLVDRAKSIRV 438 (1041)
Q Consensus 416 ~~~-~~i~~iL~~aLgdR~~~i~v 438 (1041)
.+. .++..++ ..|.. ...|..
T Consensus 380 G~veSr~r~Lv-~~Le~-~~~i~~ 401 (530)
T 2hhp_A 380 GLVESKVRLLV-MKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHH-HHHHT-STTEEE
T ss_pred CHHHHHHHHHH-HHHHC-CCCCEE
T ss_conf 32788999999-98610-567516
No 2
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=199.83 Aligned_cols=336 Identities=14% Similarity=0.141 Sum_probs=223.4
Q ss_pred CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 40267300302333479963359996275546743446651246677599999985315999861787116899660159
Q 001633 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (1041)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil 160 (1041)
..|.++|||++|+. .|+..||+++.+|..+.. +||++ .++..|++.+...++... .+++.||+
T Consensus 95 ~~v~~FGS~~lG~~-~p~SDID~~~v~p~~~~~-~dff~------------~l~~~L~~~~~v~~v~~I---~~A~VPII 157 (514)
T 1q79_A 95 GKIFTFGSYRLGVH-TKGADIDALCVAPRHVDR-SDFFT------------SFYDKLKLQEEVKDLRAV---EEAFVPVI 157 (514)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTSCH-HHHTT------------HHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred CEEEEEEEECCCCC-CCCCCEEEEEECCCCCCH-HHHHH------------HHHHHHHCCCCCCEEEEE---CCCCCCEE
T ss_conf 35998402225887-998864489944776788-99999------------999998528667469983---57860579
Q ss_pred EEEECCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCH
Q ss_conf 9996988889997099996148-976764334665688657788--9999889765213341037489999999982193
Q 001633 161 VVYPAVKSVEAPGFFVRIIPTA-ASLFNIAKLNLKRNNVRAFNQ--DGIPRATPKYNSSILEDMFLEDNAEYVEKTISRW 237 (1041)
Q Consensus 161 ~l~p~~~~~~~~~~~IRi~~~~-~~~F~~~rl~P~rnnvR~~~~--~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~ 237 (1041)
.+... +..|.|.++. +.. ..|..++++...- +-+...-+.||..... +++.+.....
T Consensus 158 K~~~~-------gi~vDL~f~~~~~~-----~~p~~l~l~~~~~L~~ld~~~~~slng~r~~--------d~I~~~vp~~ 217 (514)
T 1q79_A 158 KLCFD-------GIEIDILFARLALQ-----TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVT--------DEILHLVPNI 217 (514)
T ss_dssp EEEET-------TEEEEEEEEECSCS-----SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHH--------HHHHTSSSCH
T ss_pred EEEEC-------CEEEEEEEECCCCC-----CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH--------HHHHHHCCCC
T ss_conf 99989-------85179997037765-----6752246775365406666665430007899--------9999975674
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 8899999999999974277767-888426999999999931035486774999999999998338887873430589999
Q 001633 238 KELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQI 316 (1041)
Q Consensus 238 ~~f~dA~~LlkvWl~QRg~~~~-~ggf~gf~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~ 316 (1041)
++|+.+++++|.||+|||++.+ .||+||+.|+||++++|| +.+.++..|++..++++.+++||. +|+.++..++.
T Consensus 218 ~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Q---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~~ 293 (514)
T 1q79_A 218 DNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQ---LYPNAIASTLVHKFFLVFSKWEWP-NPVLLKQPEEC 293 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHSCCTT-SCBCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCC-CCEEECCCCCC
T ss_conf 77899999999999975887434577638999999999997---078998899999999998438999-97573146778
Q ss_pred CCCH----H--HHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 9984----6--787665159988748998425234799888999999999999964203--8786201223225665567
Q 001633 317 GVSK----E--EKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKY 388 (1041)
Q Consensus 317 ~~~~----~--~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lFl~~~~~~~~f 388 (1041)
.... + ...+-....+| +-+.....|++++++.++++.++.|.+.+.++|++. ....|+.+|. +.+|..+|
T Consensus 294 ~l~~~~w~p~~~~~dr~~~m~I-idP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~-~~~ff~~y 371 (514)
T 1q79_A 294 NLNLPVWDPRVNPSDRYHLMPI-ITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE-APNFFQKY 371 (514)
T ss_dssp SSCCCCCCTTTCGGGGGCSSCB-BCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-CCCHHHHC
T ss_conf 8777655776687676662238-688987776666579889999999999999999987528998899827-76666652
Q ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEEEEE
Q ss_conf 4899951388621011246786146899999999999974203543289970599986433578--77689974599999
Q 001633 389 DYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENG--LAVLDREPLLVGIS 466 (1041)
Q Consensus 389 D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iL~~aLgdR~~~i~v~~~~~~~~w~i~~~--~~~~~~~~i~iGl~ 466 (1041)
++++.|.+.... ..+...|..+...=-+.|...|. |...|.+.++-+ ....-.+. ..........|||.
T Consensus 372 ~~yl~v~~~a~~-------~~~~~~w~G~veSr~r~Lv~~le-~~~~i~~a~~~P-~~f~~~~~~~~~~~~~~~~~iGL~ 442 (514)
T 1q79_A 372 KHYIVLLASAPT-------EKQRLEWVGLVESKIRILVGSLE-KNEFITLAHVNP-QSFPAPKENPDKEEFRTMWVIGLV 442 (514)
T ss_dssp SEEEEEEEEESS-------HHHHHHHHHHHHTTHHHHHHHHH-TSTTEEEEEECS-CCEECCCSCTTSCCEEEEEEEEEE
T ss_pred CEEEEEEEEECC-------HHHHHHHEEHHHHHHHHHHHHHC-CCCCCEEEECCC-CCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 208999998799-------78851310204552899987750-488740530476-665774334667723589999776
Q ss_pred EC
Q ss_conf 46
Q 001633 467 VS 468 (1041)
Q Consensus 467 l~ 468 (1041)
++
T Consensus 443 ~~ 444 (514)
T 1q79_A 443 FK 444 (514)
T ss_dssp EC
T ss_pred EC
T ss_conf 55
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=107.40 Aligned_cols=273 Identities=16% Similarity=0.226 Sum_probs=183.9
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 46457401108986301356987010168999999999987039998888944377411124994037897188402673
Q 001633 7 VTLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIG 86 (1041)
Q Consensus 7 ~~~~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vv 86 (1041)
....+.+--+|.++.+.++|.... ...-+.++.++++++.++- |-..|.++
T Consensus 15 ~~~~~~L~~Ei~~f~~~i~Pt~eE--~~~R~~~~~~l~~~~~~~~---------------------------p~~~v~~f 65 (323)
T 3nyb_A 15 KEISDWLTFEIKDFVAYISPSREE--IEIRNQTISTIREAVKQLW---------------------------PDADLHVF 65 (323)
T ss_dssp SSHHHHHHHHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEE
T ss_conf 339999999999999986969999--9999999999999999988---------------------------99879995
Q ss_pred EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECC
Q ss_conf 00302333479963359996275546743446651246677599999985315999861787116899660159999698
Q 001633 87 GSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAV 166 (1041)
Q Consensus 87 GS~~l~t~~k~~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~p~~ 166 (1041)
||++.|+.. +...||+.|..|..... .| -.|..++..|++.+...++..- ..++.||+.+.-..
T Consensus 66 GS~~~g~~~-~~SDiDl~v~~~~~~~~-----------~~-~~l~~l~~~L~~~~~~~~v~~I---~~ArVPIIk~~~~~ 129 (323)
T 3nyb_A 66 GSYSTDLYL-PGSDIDCVVTSELGGKE-----------SR-NNLYSLASHLKKKNLATEVEVV---AKARVPIIKFVEPH 129 (323)
T ss_dssp STTTTTCCC-TTSCEEEEECSSCCGGG-----------HH-HHHHHHHHHHHHTTSCSSCEEE---ESSSCEEEEEEETT
T ss_pred CCCCCCCCC-CCCCCEEEEECCCCCHH-----------HH-HHHHHHHHHHHHCCCCEEEEEE---ECCCCCEEEEEECC
T ss_conf 763559989-99981499954888716-----------78-9999999998557984279997---51578779999757
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 88899970999961489767643346656886577889999889765213341037489999999982193889999999
Q 001633 167 KSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALIL 246 (1041)
Q Consensus 167 ~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~L 246 (1041)
++..+.|-.. |. ....| ..++.......|.|+..+++
T Consensus 130 -----~gi~vDIs~~---------------~~-----------~g~~~------------t~li~~~~~~~~~~r~lv~~ 166 (323)
T 3nyb_A 130 -----SGIHIAVSFE---------------RT-----------NGIEA------------AKLIREWLDDTPGLRELVLI 166 (323)
T ss_dssp -----TTEEEEEESS---------------CS-----------STTHH------------HHHHHHHHHSCTTHHHHHHH
T ss_pred -----CCCEEEEEEC---------------CC-----------HHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf -----7806888843---------------73-----------89999------------99999997752528899999
Q ss_pred HHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCC
Q ss_conf 9999974277767-88842699999999993103------54867749999999999983-3888787343058999999
Q 001633 247 LKVWARQRSSIYV-HDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGV 318 (1041)
Q Consensus 247 lkvWl~QRg~~~~-~ggf~gf~~s~ll~~L~~~~------~l~~~~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~ 318 (1041)
+|.||+|||++.. .||+++|.|++|+++.+|.. .+.+..+.-+++..+++|.+ ..||.+.++.+...+....
T Consensus 167 iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~ 246 (323)
T 3nyb_A 167 VKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYF 246 (323)
T ss_dssp HHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEE
T ss_conf 99999974999765798477999999999997488667666786245999999999996360689971799844986044
Q ss_pred CHHHHHHH---HHCCCEEEECCCCC-EEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 84678766---51599887489984-25234799888999999999999964203
Q 001633 319 SKEEKLQY---KEAFPVVICDPSAQ-VNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (1041)
Q Consensus 319 ~~~~~~~f---~~~f~vvf~D~sg~-~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~ 369 (1041)
+...-..+ +..++..+-||... .|+... + ..+..++.|.+.+.++|.+.
T Consensus 247 ~k~~~~~~~~~~~~~~l~IeDP~~~~~nigr~-~-~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 247 PKSTWSAIQPIKNPFSLAIQDPGDESNNISRG-S-FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp EGGGCGGGCSCSCSSSCCBEETTEEEEETTTT-C-TTHHHHHHHHHHHHHHHHHH
T ss_pred EHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC-H-HHHHHHHHHHHHHHHHHHHH
T ss_conf 67760100246777537986899877645646-4-87999999999999999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=99.45 Aligned_cols=286 Identities=16% Similarity=0.183 Sum_probs=185.1
Q ss_pred CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCC
Q ss_conf 01108986301356987010168999999999987039998888944377411124994037897188402673003023
Q 001633 13 MDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSIN 92 (1041)
Q Consensus 13 f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~ 92 (1041)
+--+|.++++.++|.... ...-+.++.+|+.+|.++- |-..|.++||++.|
T Consensus 44 L~~~i~~~~~~i~Pt~eE--~~~R~~v~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~G 94 (405)
T 4e8f_A 44 FTKFCYEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESG 94 (405)
T ss_dssp HHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------TTCEEEEESHHHHT
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEECCCC
T ss_conf 999999999980979999--9999999999999999878---------------------------99779998555479
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEE-ECCCCCCC
Q ss_conf 33479963359996275546743446651246677599999985315999861787116899660159999-69888899
Q 001633 93 CVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVY-PAVKSVEA 171 (1041)
Q Consensus 93 t~~k~~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~-p~~~~~~~ 171 (1041)
+... ...||+.|..|... +.. -++..++..|++. ..++. .-..++.||+.+. -...+ ..
T Consensus 95 ~~~~-~SDiDl~v~~~~~~-~~~------------~~l~~l~~~L~~~--~~~v~---~i~~ArVPIIK~~~d~~~g-~~ 154 (405)
T 4e8f_A 95 LALK-NSDMDLCVLMDSRV-QSD------------TIALQFYEELIAE--GFEGK---FLQRARIPIIKLTSDTKNG-FG 154 (405)
T ss_dssp CCBS-SCCEEEEEECCC----CT------------THHHHHHHHHHHT--TEEEE---EEEETTEEEEEEEEESSSS-CC
T ss_pred CCCC-CCCEEEEEEECCCC-CHH------------HHHHHHHHHHHHC--CCEEE---EECCCCCCEEEEEECCCCC-CC
T ss_conf 9899-99978999726899-999------------9999999999860--77448---8625778679999614777-66
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 97099996148976764334665688657788999988976521334103748999999998219388999999999999
Q 001633 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWA 251 (1041)
Q Consensus 172 ~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl 251 (1041)
.++.+.|-. ||. ...+|+ .++....+..|.|+..++++|.||
T Consensus 155 ~gi~~DIs~---------------~n~-----------~g~~~t------------~ll~~y~~~~p~~r~Lv~~lK~wa 196 (405)
T 4e8f_A 155 ASFQCDIGF---------------NNR-----------LAIHNT------------LLLSSYTKLDARLKPMVLLVKHWA 196 (405)
T ss_dssp TTCCEEEEE---------------SCH-----------HHHHHH------------HHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCEEEEEEE---------------CCC-----------CHHHHH------------HHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 864898762---------------454-----------157779------------999999861878899999999999
Q ss_pred HHCCCCCC-CCCCHHHHHHHHHHHHH-HCCC--C--------------------------------CCCCCHHHHHHHHH
Q ss_conf 74277767-88842699999999993-1035--4--------------------------------86774999999999
Q 001633 252 RQRSSIYV-HDCLNGYLISILLSYLV-SLDK--I--------------------------------NNSMKALQILRVVL 295 (1041)
Q Consensus 252 ~QRg~~~~-~ggf~gf~~s~ll~~L~-~~~~--l--------------------------------~~~~SsyQifr~~l 295 (1041)
++||++.. .||+++|.|++|+++.+ |... + ....|--+++..++
T Consensus 197 k~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF 276 (405)
T 4e8f_A 197 KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFF 276 (405)
T ss_dssp HHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 97489867579857699999999999723588757704323666665517754010104243226666356999999999
Q ss_pred HHHH-CCCCCCCCEEECCCCCCCCCHHHHHHH--------------HHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHH
Q ss_conf 9983-388878734305899999984678766--------------5159988748998-42523479988899999999
Q 001633 296 DFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY--------------KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEA 359 (1041)
Q Consensus 296 ~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~f--------------~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA 359 (1041)
+|-+ ..||.+.+|.+...+ .-++.+ ...| ...+...+-||-- ..|+...++...+..++.|-
T Consensus 277 ~yY~~~Fd~~~~vIsir~~g-~~~~K~-~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF 354 (405)
T 4e8f_A 277 RFYAYKFEPREKVVTFRRPD-GYLTKQ-EKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354 (405)
T ss_dssp HHHHHTCCTTTBEECSSSTT-CCCBHH-HHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEECCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99720268998479981688-633320-0155653344554222356776279978887565555677889999999999
Q ss_pred HHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 9999964203-8786201223225665567
Q 001633 360 ASTLQCMDKC-GDGGFEETFLTKIDFPAKY 388 (1041)
Q Consensus 360 ~~tl~~L~~~-~~d~F~~lFl~~~~~~~~f 388 (1041)
+.+..+|.+. ..+.|+.+| .+.+++.++
T Consensus 355 ~rA~~iL~~~~~~~~w~~Lf-~~~~~~~~~ 383 (405)
T 4e8f_A 355 MAASRLLNSRSYPIPYDSLF-EEAPIPPRR 383 (405)
T ss_dssp HHHHHHHTCSSSSCCGGGGG-SCCCCC---
T ss_pred HHHHHHHHHHCCCCCHHHHH-CCCCCCCCC
T ss_conf 99999985203589899982-867776212
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=93.75 Aligned_cols=275 Identities=16% Similarity=0.162 Sum_probs=163.4
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
Q ss_conf 98630135698701016899999999998703999888894437741112499403789718840267300302333479
Q 001633 18 EELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKP 97 (1041)
Q Consensus 18 dELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k~ 97 (1041)
.|+..+++|.... ...-+.++.+|+.+|.++= |-..|.+.||++.|...+
T Consensus 21 ~~l~~~~~pt~~e--~~~R~~~~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~g~~~~- 70 (349)
T 4fh3_A 21 YEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESGLALK- 70 (349)
T ss_dssp HHHHHHHBCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCEEEEESHHHHTCCBS-
T ss_pred HHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEECCCCCCCC-
T ss_conf 9999970989999--9999999999999999988---------------------------998999971144789997-
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEE
Q ss_conf 96335999627554674344665124667759999998531599986178711689966015999969888899970999
Q 001633 98 AVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVR 177 (1041)
Q Consensus 98 ~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~p~~~~~~~~~~~IR 177 (1041)
+..||+.|..|...- +..+...+...+.+.. .++..- ..++.||+...-........+..+.
T Consensus 71 ~SDiDl~v~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~i---~~ArVPiik~~~~~~~~~~~~~~~D 132 (349)
T 4fh3_A 71 NSDMDLCVLMDSRVQ-------------SDTIALQFYEELIAEG--FEGKFL---QRARIPIIKLTSDTKNGFGASFQCD 132 (349)
T ss_dssp SCCEEEEEECCTTSC-------------HHHHHHHHHHHHHHTT--EEEEEE---EETTEEEEEEEEESSSSSCTTCCEE
T ss_pred CCCEEEEEECCCCCC-------------HHHHHHHHHHHHHHHC--CCCEEE---EEEEEEEEEEEECCCCCCCCCCEEE
T ss_conf 989779996588878-------------5899999999987501--465575---5404335999841456643562454
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 96148976764334665688657788999988976521334103748999999998219388999999999999742777
Q 001633 178 IIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSSI 257 (1041)
Q Consensus 178 i~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~~ 257 (1041)
|-. || ....+ ...++.......|.|+..++++|.||++||++
T Consensus 133 is~---------------~~-----------~~g~~------------~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~ 174 (349)
T 4fh3_A 133 IGF---------------NN-----------RLAIH------------NTLLLSSYTKLDARLKPMVLLVKHWAKRKQIN 174 (349)
T ss_dssp EEE---------------SC-----------HHHHH------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCC
T ss_pred CCC---------------CC-----------CHHHH------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 676---------------76-----------26888------------99999998620877889999999999984999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCC-----------------------------------CCCCHHHHHHHHHHHHH-C
Q ss_conf 67-88842699999999993103548-----------------------------------67749999999999983-3
Q 001633 258 YV-HDCLNGYLISILLSYLVSLDKIN-----------------------------------NSMKALQILRVVLDFIA-T 300 (1041)
Q Consensus 258 ~~-~ggf~gf~~s~ll~~L~~~~~l~-----------------------------------~~~SsyQifr~~l~fLa-~ 300 (1041)
.. .||+|+|.|++|+++-+|..... ...|.-+++..++.|-+ .
T Consensus 175 ~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~ 254 (349)
T 4fh3_A 175 SPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYK 254 (349)
T ss_dssp CGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 86789877299999999999734678768066644545663135763554420333255447543899999999986420
Q ss_pred CCCCCCCEEECCCCCCCCCHH-------------HHHHHHHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888787343058999999846-------------787665159988748998-425234799888999999999999964
Q 001633 301 SKLWNRGLYFPPKGQIGVSKE-------------EKLQYKEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCM 366 (1041)
Q Consensus 301 ~d~~~~~i~~~~~~~~~~~~~-------------~~~~f~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~L 366 (1041)
.||.+.++.....+. -.+.. ........++....||-- ..|+...++..++..++.|-+.+.++|
T Consensus 255 Fd~~~~vIsi~~~~~-~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L 333 (349)
T 4fh3_A 255 FEPREKVVTFRRPDG-YLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLL 333 (349)
T ss_dssp CCTTTBCBCSSSTTC-CCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 587784698438988-6556774344444456753345778835999899989873799989899999999999999997
Q ss_pred HHCC-CCCCCCCCC
Q ss_conf 2038-786201223
Q 001633 367 DKCG-DGGFEETFL 379 (1041)
Q Consensus 367 ~~~~-~d~F~~lFl 379 (1041)
.+.. ...|+.+|-
T Consensus 334 ~~~~~~~~~~~lfe 347 (349)
T 4fh3_A 334 NSRSYPIPYDSLFE 347 (349)
T ss_dssp HCCSSSCCGGGGGS
T ss_pred HCCCCCCCHHHHHH
T ss_conf 27456988788702
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=87.09 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=154.9
Q ss_pred CCCEEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCC--CCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 884026730030-2333479963359996275546743--44665--124667759999998531599986178711689
Q 001633 79 KPKTFKIGGSYS-INCVVKPAVNVDLFVGLPKECFHEK--DYLNH--RYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQN 153 (1041)
Q Consensus 79 ~P~~v~vvGS~~-l~t~~k~~~~VDlaV~mP~~~fq~K--DylN~--RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~g 153 (1041)
+-..|.+.|||+ .|. .-++..||+.|..|...-..| |.-.. |. .+.-.|..++..|++.+...++..- .
T Consensus 65 p~~~v~~FGS~~vtGl-~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~L~~~~~~~~v~~i---~ 138 (353)
T 2ikf_A 65 PLMRLYTFGSTVVYGV-HEKGSDVDFVVLNKTDVEDGKGGDAATQVAKG--LQADILAKLARVIRQKHLSWNVEEV---R 138 (353)
T ss_dssp TTCEEEEESHHHHHSS-CCTTCCEEEEEECHHHHHSTTCCCCCSHHHHH--HHHHHHHHHHHHHHHHCTTSEEEEE---C
T ss_pred CCCEEEEECCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHCCCCCCEEEE---C
T ss_conf 9908998237641688-99876623898625555666443302445556--6999999999999836888746994---2
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 96601599996988889997099996148976764334665688657788999988976521334103748999999998
Q 001633 154 EARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKT 233 (1041)
Q Consensus 154 d~~kPil~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~ 233 (1041)
+++.||+.+... .+..+.|-. ||. ...+|+ +++...
T Consensus 139 ~ArVPIiK~~~~------~~i~~Dis~---------------~n~-----------~g~~~t------------~ll~~~ 174 (353)
T 2ikf_A 139 RTRVPVVRVKGG------GAVDFDITA---------------YRR-----------NGVRNS------------ALLRAY 174 (353)
T ss_dssp SSSSCEEEEECS------SSCEEEEEE---------------SCC-----------HHHHHH------------HHHHHH
T ss_pred CCCEEEEEEECC------CCCEEEEEE---------------CCC-----------CHHHHH------------HHHHHH
T ss_conf 466369999858------971799882---------------585-----------389999------------999999
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCC-C-CCCHHHHHHHHHHHHHHCCC----CC-----------------------CC
Q ss_conf 21938899999999999974277767-8-88426999999999931035----48-----------------------67
Q 001633 234 ISRWKELGEALILLKVWARQRSSIYV-H-DCLNGYLISILLSYLVSLDK----IN-----------------------NS 284 (1041)
Q Consensus 234 ~~~~~~f~dA~~LlkvWl~QRg~~~~-~-ggf~gf~~s~ll~~L~~~~~----l~-----------------------~~ 284 (1041)
....|.|+..++++|.|+++||++.. . ||+++|.|++|+++.||..+ +. ..
T Consensus 175 ~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (353)
T 2ikf_A 175 FEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEG 254 (353)
T ss_dssp HHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 98692299999999999998699987779983499999999999972688997681116765515777677656677784
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCCCHHHHHHHH-------------HCCCEEEECCCC-CEEECCCCCH
Q ss_conf 749999999999983-3888787343058999999846787665-------------159988748998-4252347998
Q 001633 285 MKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQYK-------------EAFPVVICDPSA-QVNLAFRMTS 349 (1041)
Q Consensus 285 ~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~f~-------------~~f~vvf~D~sg-~~Nl~~~~t~ 349 (1041)
.+--+++..++.|-+ ..||.+.++.+...+ ..+.. ...+. ..+...+.||-- ..|+...++.
T Consensus 255 ~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--~~~k~-~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~ 331 (353)
T 2ikf_A 255 LELGTQVLDFLHFFLHEFDSDKQVISLNRPG--ITTKE-ELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTP 331 (353)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTEEECSSSSS--CEEHH-HHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CEECH-HHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 5599999999999632057674289767996--02404-30445332311113577776638998999999865679898
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999964
Q 001633 350 VGFCELQDEAASTLQCM 366 (1041)
Q Consensus 350 ~s~~~L~~eA~~tl~~L 366 (1041)
..++.+|.|-+.+.+.+
T Consensus 332 ~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 332 LKRDFLRRHLEKARDTA 348 (353)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=81.00 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=157.4
Q ss_pred CCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 57401108986301356987010168999999999987039998888944377411124994037897188402673003
Q 001633 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (1041)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (1041)
...+-.||.++.+.++|.... ...=..++.++++++..+ | |-..|.+.||+
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE--~~~R~~vv~~le~ii~~~-------------f--------------P~a~V~~FGS~ 181 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEEN--TKLRYLTCSLIEDMAAAY-------------F--------------PDCIVRPFGSS 181 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHTTT-------------S--------------TTCEEEEEGGG
T ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHH-------------C--------------CCCEEEEECCC
T ss_conf 421789999999986999999--999999999999999987-------------8--------------99879996877
Q ss_pred CCCCCCCCCCCEEEEEECCCCC--------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEECCCCC
Q ss_conf 0233347996335999627554--------------674344665124667759999998531599-9861787116899
Q 001633 90 SINCVVKPAVNVDLFVGLPKEC--------------FHEKDYLNHRYHAKRCLYLCVIKKHLKSSP-SFDKVEWSAMQNE 154 (1041)
Q Consensus 90 ~l~t~~k~~~~VDlaV~mP~~~--------------fq~KDylN~RY~~KRA~YLa~iA~~L~~~~-~~~~v~~~~~~gd 154 (1041)
+.|.. -++..+||.|..|..- +|-|.--+.|+-..+ .|..|++.|++.. .+.++. .-..
T Consensus 182 ~tGL~-lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~--iL~~la~~L~~~~~~~~~v~---~I~~ 255 (464)
T 3pq1_A 182 VNTFG-KLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQK--ILSVLGECLDHFGPGCVGVQ---KILN 255 (464)
T ss_dssp TSSCC-BTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHH--HHHHHHHHHHHSSTTEEEEE---EECS
T ss_pred CCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCEEE---EECC
T ss_conf 24888-999995799964775555432356631345541244356778999--99999999984389973268---8537
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66015999969888899970999961489767643346656886577889999889765213341037489999999982
Q 001633 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (1041)
Q Consensus 155 ~~kPil~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (1041)
++.||+...-.. ++..+.|-. || ....+|+ +++....
T Consensus 256 ARVPIIKf~~~~-----tgi~~DIS~---------------nn-----------~~gi~ns------------~ll~~y~ 292 (464)
T 3pq1_A 256 ARCPLVRFSHQA-----SGFQCALTT---------------NN-----------RIALTSS------------ELLYIYG 292 (464)
T ss_dssp SSSCEEEEEETT-----TCCEEEEEC---------------SC-----------TTHHHHH------------HHHHHHH
T ss_pred CCCCEEEEEECC-----CCEEEEEEC---------------CC-----------CCHHHHH------------HHHHHHH
T ss_conf 898779999857-----883899846---------------88-----------7289999------------9999998
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCC-CCC-CHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHH--HHHHHCCC--CCCC
Q ss_conf 1938899999999999974277767-888-426999999999931035--48677499999999--99983388--8787
Q 001633 235 SRWKELGEALILLKVWARQRSSIYV-HDC-LNGYLISILLSYLVSLDK--INNSMKALQILRVV--LDFIATSK--LWNR 306 (1041)
Q Consensus 235 ~~~~~f~dA~~LlkvWl~QRg~~~~-~gg-f~gf~~s~ll~~L~~~~~--l~~~~SsyQifr~~--l~fLa~~d--~~~~ 306 (1041)
+..|.++.-++++|.|+++||++.. .|| +++|.|.+|+.+-+|... +-+.....+-+... -..+..+| +...
T Consensus 293 ~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~d 372 (464)
T 3pq1_A 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRD 372 (464)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCC
T ss_conf 74821889999999999980998656699767399999999999715998489767823213755441224645664341
Q ss_pred --CEEECCCCCCCCCHHHHHHHHHCCCEEEECCC-----CCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --34305899999984678766515998874899-----8425234799888999999999999964203
Q 001633 307 --GLYFPPKGQIGVSKEEKLQYKEAFPVVICDPS-----AQVNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (1041)
Q Consensus 307 --~i~~~~~~~~~~~~~~~~~f~~~f~vvf~D~s-----g~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~ 369 (1041)
.+....+ ...+ .+-+..|-+.|.. +|-. -.+|+..+++....+.++.+++.|.-+|...
T Consensus 373 l~~l~~~~N-~~sl-geLL~gFF~yYa~--FDf~~~vIsI~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~ 438 (464)
T 3pq1_A 373 LSRIKPSQN-TETL-ELLLKEFFEYFGN--FAXXXXXXXXXXXXXXXVSQSQLQKFVDLARESAWILQQE 438 (464)
T ss_dssp ------CCC-CCCH-HHHHHHHHHHGGG--CCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCC-CCCH-HHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 766378888-5779-9999999999984--8874333211211124448999999999999999997401
No 8
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=1.00 E-value=1 Score=76.77 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=176.3
Q ss_pred CCHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCC
Q ss_conf 1089863-013569870101689999999999870399988889443774111249940378971884026730030233
Q 001633 15 YKVEELL-KEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINC 93 (1041)
Q Consensus 15 LQidELL-~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t 93 (1041)
=|+++.+ ..++|+... ...+......+.+.|.+.--... . . ... -.++-.+|||+-+|
T Consensus 9 ~~l~~fi~~~l~p~~~~--~~~i~~~~~~I~~~L~~~~~~~~----~---~-------~~~-----v~~v~~~GSyargT 67 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXF--RTQVKEAIDIVXRFLKERCFQGT----A---D-------PVR-----VSKVVKGGSSGKGT 67 (349)
T ss_dssp GGHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHHHTTCC-----------------CCE-----EEEEEEEEEC----
T ss_pred HHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCC----C---C-------CCC-----EEEEEEECCCCCCC
T ss_conf 99999999546998788--99999999999999976302455----6---7-------752-----47899716737884
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEECCCCCCCEE-EEEEEECCCCCC
Q ss_conf 34799633599962755467434466512466775999999853159--998617871168996601-599996988889
Q 001633 94 VVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS--PSFDKVEWSAMQNEARKP-VLVVYPAVKSVE 170 (1041)
Q Consensus 94 ~~k~~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~--~~~~~v~~~~~~gd~~kP-il~l~p~~~~~~ 170 (1041)
++++...|||+|.+|.. -...|.+ ..+.-++..|-+.|.+. ....++.++........| .+.+.-.... .
T Consensus 68 ~lrg~sDiDlvV~l~~~-~~~~~~~-----~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~-~ 140 (349)
T 1px5_A 68 TLRGRSDADLVVFLTKL-TSFEDQL-----RRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQ-L 140 (349)
T ss_dssp ----CEEEEEEEEEESC-SCTTHHH-----HTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETT-T
T ss_pred CCCCCCCEEEEEEECCC-CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCC-C
T ss_conf 36898744599997898-7666677-----569999999999999864310226641572034567854899997367-6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-----------CCCHHHHHHHHHHHHHCHHH
Q ss_conf 9970999961489767643346656886577889999889765213341-----------03748999999998219388
Q 001633 171 APGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILE-----------DMFLEDNAEYVEKTISRWKE 239 (1041)
Q Consensus 171 ~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~-----------D~~~~~~l~~l~~~~~~~~~ 239 (1041)
..++.|.|.||....- .+.+ +..+....|...|.. .+....|.+++.+ ....
T Consensus 141 ~~~~~vDVvPa~~~l~---~~~~-----------~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~ 203 (349)
T 1px5_A 141 QQEVEFDVLPAFDALG---QWTP-----------GYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTK 203 (349)
T ss_dssp TEEEEEEEEEEECSSC---SCCT-----------TSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHH
T ss_pred CCCEEEEEEEEHHHHC---CCCC-----------CCCCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHH---CCHH
T ss_conf 7746999997134313---0014-----------668983778988760466566761202077999999985---8498
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC
Q ss_conf 99999999999974277767888426999999999931035486774999999999998338887873430589999998
Q 001633 240 LGEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVS 319 (1041)
Q Consensus 240 f~dA~~LlkvWl~QRg~~~~~ggf~gf~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~ 319 (1041)
+++-|.|+|-|.++-+...+..++.+|.+-+|++|..+.+.-...++-+|-|+.+|++|+... .-.++....- +..
T Consensus 204 ~k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~--~~~i~w~~~y--~~~ 279 (349)
T 1px5_A 204 LKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ--KLCIFWEAYY--DFT 279 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG--GCEECCCSSC--CSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCC--CCC
T ss_conf 889999999999984330368989818999999999871798557878999999999997277--3540654344--665
Q ss_pred HHHHHHH-----HHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4678766-----5159988748998-4252347998889999999999999642
Q 001633 320 KEEKLQY-----KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCMD 367 (1041)
Q Consensus 320 ~~~~~~f-----~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~L~ 367 (1041)
.+....| ...-|++ +||.- .-|+.+. +..+++++.++|+..|...-
T Consensus 280 ~~~~~~fl~~~l~~~~p~I-~DP~dp~~NVa~~-~~~~~~~~~~~A~~~l~~~~ 331 (349)
T 1px5_A 280 NPVVGRCMLQQLKKPRPVI-LDPADPTGNVGGG-DTHSWQRLAQEARVWLGYPC 331 (349)
T ss_dssp SHHHHHHHHHHHTSSSCEE-BCTTCTTCBTTCS-CHHHHHHHHHHHHHHTTSGG
T ss_pred CHHHHHHHHHHHCCCCCEE-ECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCHH
T ss_conf 2667765355415799746-6999987762678-56529999999999995654
No 9
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=73.34 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=117.1
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 45740110898630135698701016899999999998703999888894437741112499403789718840267300
Q 001633 9 LTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGS 88 (1041)
Q Consensus 9 ~~~~f~LQidELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS 88 (1041)
.+..|--+|.++.+.++|.... ...-+.++.+++++|.++= |-..|.+.||
T Consensus 3 ~~~~lt~EI~dFy~~i~PT~eE--~~~R~~vv~~l~~ii~~~~---------------------------p~~~v~~FGS 53 (384)
T 3hj4_A 3 AKREFIRGMMAHYRASLPPPEH--SVVIHELQKRVLDIGMLAV---------------------------NKAHVELFGS 53 (384)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTH--HHHHHHHHHHHHHHHHHHS---------------------------TTCEEEEESH
T ss_pred CHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEE
T ss_conf 2667899999999973999899--9999999999999999878---------------------------9967999514
Q ss_pred ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH-HHH---HHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEE
Q ss_conf 30233347996335999627554674344665124667-759---99999853159998617871168996601599996
Q 001633 89 YSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKR-CLY---LCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYP 164 (1041)
Q Consensus 89 ~~l~t~~k~~~~VDlaV~mP~~~fq~KDylN~RY~~KR-A~Y---La~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~p 164 (1041)
++.|... |+..||+.|..|..- +++.. ..++ +.+ ++.++..+... .+..+.. -.++-||+...-
T Consensus 54 ~~tgl~l-p~SDiDlvI~~~~~~----~~~~~--~~~~~~~~~lrll~L~k~~~~~-~ie~V~i----i~ARVPIIKf~d 121 (384)
T 3hj4_A 54 HVSGFCT-PHSDADISLTYRNFS----PWLQG--MERVDEQNNKRMTRFGKEASAM-GMEDVRY----IRARIPVVQFTD 121 (384)
T ss_dssp HHHSCCC-TTCCEEEEEECTTCC----GGGTT--CHHHHHHHHHHHHHHHHHHHHH-TCEEEEE----ECSSSCEEEEEC
T ss_pred CCCCCCC-CCCCEEEEEECCCCC----CCCCC--CCHHHHHHHHHHHHHHHHCCCC-CEEEEEE----CCCCCCEEEEEE
T ss_conf 5578989-999856999637876----42232--1105678899999997304337-7058733----486457799998
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHH-HHHH
Q ss_conf 988889997099996148976764334665688657788999988976521334103748999999998219388-9999
Q 001633 165 AVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE-LGEA 243 (1041)
Q Consensus 165 ~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~-f~dA 243 (1041)
.. ++..+.|-. || ....+|+ +++....+..|. ++.-
T Consensus 122 ~~-----tgi~~DIS~---------------nn-----------~~gi~ns------------~ll~~y~~~~p~rlr~L 158 (384)
T 3hj4_A 122 GV-----TGIHCDVSI---------------GN-----------IGGVENS------------KILCAIRQVFPDFYGAY 158 (384)
T ss_dssp TT-----TCCEEEEEE---------------CC-----------HHHHHHH------------HHHHHHHHTSHHHHHHH
T ss_pred CC-----CCEEEEEEE---------------CC-----------CCHHHHH------------HHHHHHHHCCCHHHHHH
T ss_conf 68-----890798996---------------26-----------5048999------------99999874286989999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999974277767-8884269999999999310354
Q 001633 244 LILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKI 281 (1041)
Q Consensus 244 ~~LlkvWl~QRg~~~~-~ggf~gf~~s~ll~~L~~~~~l 281 (1041)
++++|.||++||++.. .||+++|.|.+|+++-+|...+
T Consensus 159 vllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~v 197 (384)
T 3hj4_A 159 IHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 197 (384)
T ss_dssp HHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999999838997668994089999999999943898
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=1.00 E-value=1 Score=69.32 Aligned_cols=347 Identities=16% Similarity=0.166 Sum_probs=198.3
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 89863013569870101689999999999870399988889443774111249940378971884026730030233347
Q 001633 17 VEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96 (1041)
Q Consensus 17 idELL~ev~~~~~~~~~~~le~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k 96 (1041)
.+|.++.++|+... ...+......|++.|.+ . +.++-.+|||+-+|..+
T Consensus 7 ~~~~l~~i~P~~~E--~~~~~~~~~~I~~~L~~--------~---------------------~~~v~~~GS~AkgT~Lr 55 (437)
T 1r89_A 7 LEKALELVIPDEEE--VRKGREAEEELRRRLDE--------L---------------------GVEYVFVGSYARNTWLK 55 (437)
T ss_dssp HHHHHHHHSCCHHH--HHHHHHHHHHHHHHHHH--------H---------------------TCCEEEEHHHHHTCCCT
T ss_pred HHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHH--------C---------------------CCEEEEECCCCCCCCCC
T ss_conf 99999761979899--99999999999999983--------7---------------------87089813435897379
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 99633599962755467434466512466775999999853159998617871168996601599996988889997099
Q 001633 97 PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFV 176 (1041)
Q Consensus 97 ~~~~VDlaV~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPil~l~p~~~~~~~~~~~I 176 (1041)
+...|||.|-+|.+.- ++.|+. + .+..+-+.+++ ..+.|+ -.|.+.+.-. ++.+
T Consensus 56 g~sDIDIfv~f~~~~~--~e~l~~-----~--~l~~~~e~l~~----~~~~ya------~hpyV~~~f~-------g~~v 109 (437)
T 1r89_A 56 GSLEIDVFLLFPEEFS--KEELRE-----R--GLEIGKAVLDS----YEIRYA------EHPYVHGVVK-------GVEV 109 (437)
T ss_dssp TCCEEEEEEEECTTSC--HHHHHH-----H--HHHHHHHHSSS----EEEEES------SSEEEEEEET-------TEEE
T ss_pred CCCCCEEEEECCCCCC--HHHHHH-----H--HHHHHHHHHHH----HHHHCC------CCCEEEEEEC-------CEEE
T ss_conf 9987029999389988--899988-----7--89999999987----640006------8866999866-------6589
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99614897676433466568865778899998897652133410374899999999821938899999999999974277
Q 001633 177 RIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSS 256 (1041)
Q Consensus 177 Ri~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~ 256 (1041)
.|.||..-.- .+ .++ | ++ |. ...|.+++.+-..+ +++-+.|+|-|+++-|.
T Consensus 110 DVVP~y~v~~------g~--~~~----------t-----av--Dr-tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ 160 (437)
T 1r89_A 110 DVVPCYKLKE------PK--NIK----------S-----AV--DR-TPFHHKWLEGRIKG---KENEVRLLKGFLKANGI 160 (437)
T ss_dssp EEEEEECCSS------SS--CCC----------S-----HH--HH-HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCC------CC--CCC----------C-----CC--CC-CHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC
T ss_conf 9997787568------76--665----------5-----23--58-68999999860143---24587999999985796
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCEE
Q ss_conf 76---788842699999999993103548677499999999999833888787343058999999846787665159988
Q 001633 257 IY---VHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVV 333 (1041)
Q Consensus 257 ~~---~~ggf~gf~~s~ll~~L~~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~~~~~~f~~~f~vv 333 (1041)
.+ ..+||+||.+=+|+++ |.-|+.+++.+++ |. .++...... . ...| .-|++
T Consensus 161 ygse~k~~gfSsYllELLv~~-------------yG~f~~vl~~~~~--w~-~~~~Id~~~----~---~~~~--~~Plv 215 (437)
T 1r89_A 161 YGAEYKVRGFSGYLCELLIVF-------------YGSFLETVKNARR--WT-RRTVIDVAK----G---EVRK--GEEFF 215 (437)
T ss_dssp BCCSTTTCCBCHHHHHHHHHH-------------HSSHHHHHHHHTT--CC-TTEEEEGGG----T---EEEE--CSSCE
T ss_pred CCCCCCCCCCCHHHHHHHHHH-------------HCCHHHHHHHHHH--HC-CCEEEECCC----C---CCCC--CCCEE
T ss_conf 787552788988999999999-------------8677999999997--07-971895177----7---5357--89979
Q ss_pred EECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCC----CCCCEEEEEECCCCCCCCCC
Q ss_conf 748998-4252347998889999999999999642038786201---223225665----56748999513886210112
Q 001633 334 ICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEE---TFLTKIDFP----AKYDYCVRLNLRGHTEVHAL 405 (1041)
Q Consensus 334 f~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~~~d~F~~---lFl~~~~~~----~~fD~~~~i~~~~~~~~~~~ 405 (1041)
.+||.- .-|+++.++.-.+.++.++|+.-+.. ++.+-|.+ -.+.+.... .|=..++.+.....
T Consensus 216 ViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~---ps~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p------ 286 (437)
T 1r89_A 216 VVDPVDEKRNVAANLSLDNLARFVHLCREFMEA---PSLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKP------ 286 (437)
T ss_dssp EEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS---CCGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECC------
T ss_pred EECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHC---CCHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCC------
T ss_conf 879989987420007899999999999999967---62976589775666778999998747967999997899------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 46786146899999999999974203543289970599986433578776899745999994681121100234899999
Q 001633 406 GFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAEN 485 (1041)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~iL~~aLgdR~~~i~v~~~~~~~~w~i~~~~~~~~~~~i~iGl~l~~~~~a~r~vd~GP~ad~ 485 (1041)
. ..++..|-++. +..+-+.+.|..+= ..+.... . .|. +....+-+.+...+--.=.+-.||+...
T Consensus 287 ~-~~~D~l~pQl~-k~~~~i~~~L~~~g--F~v~~~~-~-~~~---------~~~~~l~~e~~~~~lp~~~~~~GPpv~~ 351 (437)
T 1r89_A 287 D-IVDDNLYPQLE-RASRKIFEFLEREN--FMPLRSA-F-KAS---------EEFCYLLFECQIKEISRVFRRMGPQFED 351 (437)
T ss_dssp S-CCHHHHHHHHH-HHHHHHHHHHHHTT--CCEEEEE-E-EEC---------SSEEEEEEEESCSCCCSEEEEEEEETTC
T ss_pred C-CCCCCCHHHHH-HHHHHHHHHHHHCC--CEEEEEC-C-CCC---------CCEEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 9-99654038999-99999999999789--8899852-4-233---------8716999997345568736754888661
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8999999842158
Q 001633 486 KEEALRFRKFWGE 498 (1041)
Q Consensus 486 ~~ea~~FR~FWG~ 498 (1041)
.+.|..|.+=+.+
T Consensus 352 ~~~~~~F~~k~~~ 364 (437)
T 1r89_A 352 ERNVKKFLSRNRA 364 (437)
T ss_dssp HHHHHHHHHSCCS
T ss_pred HHHHHHHHHHCCC
T ss_conf 5569999985477
Done!