Query 001634
Match_columns 1041
No_of_seqs 197 out of 379
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 17:39:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001634.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_929-933//hhsearch_pdb/001634hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bg1_B Nucleoporin NUP145; NPC 1.0 1 1 642.5 26.8 317 491-864 117-442 (442)
2 3jro_A Fusion protein of prote 1.0 1 1 590.7 24.6 318 492-866 427-753 (753)
3 2q5x_A Nuclear pore complex pr 1.0 1 1 387.3 14.2 145 42-191 2-155 (155)
4 1ko6_A Nuclear pore complex pr 1.0 1 1 359.6 15.8 143 37-184 36-187 (187)
5 3kep_A Nucleoporin NUP145; nuc 1.0 1 1 348.7 14.9 142 38-185 11-167 (174)
6 3nf5_A Nucleoporin NUP116; nuc 1.0 1 1 348.6 14.8 134 43-185 10-156 (164)
7 3pbp_B Nucleoporin NUP116/NSP1 1.0 1 1 340.7 16.1 136 45-186 1-146 (148)
8 3f3f_C Nucleoporin NUP85; stru 1.0 1 1 47.5 16.6 321 491-878 175-567 (570)
9 3mzk_B Protein transport prote 1.0 1 1 40.6 7.7 105 572-676 152-267 (441)
10 2pm7_A Protein WEB1, protein t 1.0 1 1 37.6 8.6 97 571-673 144-241 (399)
No 1
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=1.00 E-value=1 Score=642.50 Aligned_cols=317 Identities=20% Similarity=0.320 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 35599999999873199647987778999714665420159998643111026899999999999942233220013567
Q 001634 491 LMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDE 570 (1041)
Q Consensus 491 ~~~e~~VW~L~saLfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~~lS~WL~~~V~~~v~~ev~~~~~ 570 (1041)
..+++.||+||+||||+.+.+.. ..+.. ++.+...+.||++||+||++.+++.+++++. .+
T Consensus 117 ~~~e~~vW~L~saLf~~~~~~~~----~~~~~-------------~~~~~~~~~Rr~~l~~WL~~~~~~~v~~~~~--~~ 177 (442)
T 3bg1_B 117 TSSDYNLWKLSSILFDPVSYPYK----TDNDQ-------------VKMALLKKERHCRLTSWIVSQIGPEIEEKIR--NS 177 (442)
T ss_dssp TSHHHHHHHHHHHHTSCCCCSSC----CSCHH-------------HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--TC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC----CCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC
T ss_conf 05786999999996699767654----45416-------------7888999999999999999998888998740--37
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 867999999991499999999999759972246776218990118999-9999999984987456708799999996077
Q 001634 571 SNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDI-AHQLDLWRVNGLDFKFIEKDRIRLYELLAGH 649 (1041)
Q Consensus 571 ~~~le~if~lLsg~~I~eAc~lAi~sgd~rLAtLLsq~gs~~~~r~~l-~~QL~~W~~~~~d~~~I~~~rlkIY~LLAG~ 649 (1041)
++++|+||.+||||+|++||++|+++||+|||+||||+||++++|++| ++||+.|+++ + ++|++.|+|||+||||+
T Consensus 178 ~~~~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~~~~r~~la~~QL~~W~~~--~-~~I~~~~~kiY~LLAG~ 254 (442)
T 3bg1_B 178 SNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTG--G-CSIDKNISKIYKLLSGS 254 (442)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSS--C-CCSCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--C-CCCCHHHHHHHHHHCCC
T ss_conf 99999999999779999999999987992799999986489349999999999999870--7-64788999999996689
Q ss_pred CCCCC----C-CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 54456----7-789989999978875269999999999999998840799999988544689989987788999888458
Q 001634 650 IHSSL----N-DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSY 724 (1041)
Q Consensus 650 ~~~~~----~-~~~LdW~ralgL~LWYg~~~~~sI~~ai~~y~~~~~~~~a~~P~P~Y~~~~~~~~~~~~~~~~~~Dl~y 724 (1041)
++... + .++|||+|+||||||||+++++||++||..|++++. +| .+|++|
T Consensus 255 ~~e~~~~~~~i~~~LdW~ralgl~LWY~~~~~~si~~av~~f~~~~~-----~P--------------------~~D~~~ 309 (442)
T 3bg1_B 255 PFEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-----LP--------------------YDDPIG 309 (442)
T ss_dssp STTSTTCSGGGGGTSCHHHHHHHHHHTCCCSSCCHHHHHHHHHHHSC-----CC--------------------TTCHHH
T ss_pred CCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC-----CC--------------------CCCHHH
T ss_conf 54344441003568988999889965279999999999999988316-----88--------------------778899
Q ss_pred HHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 88772035887523256541126889897873023799999987078897--1256768999999995998336889886
Q 001634 725 YLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISS--NDLQILDMGLVSQLLCQGKCHWAIYVVL 802 (1041)
Q Consensus 725 ~LLkL~~~~~~~~~~L~~il~P~s~t~~plD~rLsW~l~~iL~a~g~~~~--~~~~~Lt~~fA~QLe~~Glw~wAifVll 802 (1041)
+||||||++ . .++++|+|++++++||||||+|||+++|+++|+.+. ...++||++||+|||+.|+|+|||||+|
T Consensus 310 ~LLkLya~~-~---~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~~~~~~~~~d~L~~~fA~QLe~~Glw~wAifVll 385 (442)
T 3bg1_B 310 VIFQLYAAN-E---NTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSC 385 (442)
T ss_dssp HHHHHHHSC-T---THHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHCCC-C---CHHHHHCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999997057-7---989984710268986554227899999986797646745788999999999987899478999993
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 06699996268999999999751036787147999999-929999999999998978709999
Q 001634 803 HMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELS 864 (1041)
Q Consensus 803 Hl~~~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~gd~~ 864 (1041)
||+|+. .|+.+||++|.|||+.+.. ..+.||+ +|+||++|||||||+||+|+||++
T Consensus 386 Hl~d~~----~Re~avr~lL~R~~~~~~~--~~~~fL~~~L~IP~~WI~eAkAl~a~~~gd~~ 442 (442)
T 3bg1_B 386 FLNDDK----AAEDTIKRLVMREITLLRA--STNDHILNRLKIPSQLIFNAQALKDRYEGNYL 442 (442)
T ss_dssp TCCCHH----HHHHHHHHHHHHSTGGGST--TTTSCHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHH----HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 278868----8999999999962641143--77999999709799999999999987548989
No 2
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=590.69 Aligned_cols=318 Identities=19% Similarity=0.294 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 55999999998731996479877789997146654201599986431110268999999999999422332200135678
Q 001634 492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES 571 (1041)
Q Consensus 492 ~~e~~VW~L~saLfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~~lS~WL~~~V~~~v~~ev~~~~~~ 571 (1041)
.+|+.||+||+||||+.+.+.. ..+ +.+..++....||+.|++||++.+.+.++.++.. ..
T Consensus 427 ~~e~~~w~L~~~Lf~~~~~~~~----~~~-------------~~~~~~~~~~~r~~~~~~wl~~~~~~~~~~~~~~--~~ 487 (753)
T 3jro_A 427 SSDYNLWKLSSILFDPVSYPYK----TDN-------------DQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRN--SS 487 (753)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSC----CSS-------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CS
T ss_pred CHHHHHHHHHHHHCCCCCCCCC----CCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC
T ss_conf 6487899999997699767755----565-------------3789999999999999999999988777765422--69
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6799999999149999999999975997224677621899-011899999999999849874567087999999960775
Q 001634 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGS-TVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (1041)
Q Consensus 572 ~~le~if~lLsg~~I~eAc~lAi~sgd~rLAtLLsq~gs~-~~~r~~l~~QL~~W~~~~~d~~~I~~~rlkIY~LLAG~~ 650 (1041)
+++|+||.+|++|+|++||++|+++||+|||+||+|+||+ ..+|.++++||+.|++.+ .+|++.++|||+||||++
T Consensus 488 ~~~~~i~~~L~~~~i~~A~~~a~~~~~~~la~ll~~~~~~~~~~~~~~~~Ql~~W~~~~---~~i~~~~~~iy~llag~~ 564 (753)
T 3jro_A 488 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGG---CSIDKNISKIYKLLSGSP 564 (753)
T ss_dssp CTTHHHHHHTTTTCHHHHHHHHHHTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTTT---CCCCHHHHHHHHTSSSCC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHCCCC
T ss_conf 87999999997699999999999869907999999865897789999999999999768---878988999999967996
Q ss_pred CCCCC-----CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 44567-----7899899999788752699999999999999988407999999885446899899877889998884588
Q 001634 651 HSSLN-----DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY 725 (1041)
Q Consensus 651 ~~~~~-----~~~LdW~ralgL~LWYg~~~~~sI~~ai~~y~~~~~~~~a~~P~P~Y~~~~~~~~~~~~~~~~~~Dl~y~ 725 (1041)
.+... .++|||+|+||||||||++++.+|+++|..|++++. .+..|++|+
T Consensus 565 ~~~~~~~~~~~~~l~W~~~l~~~lwy~~~~~~~~~~~~~~~~~~~~-------------------------~~~~d~~~~ 619 (753)
T 3jro_A 565 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-------------------------LPYDDPIGV 619 (753)
T ss_dssp SSSTTCCGGGGTTSCHHHHHHHHHHTSCTTTSCHHHHHHHHHTTCC-------------------------CCTTCHHHH
T ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC-------------------------CCCCCHHHH
T ss_conf 3123321012479998999999997289998989999999885358-------------------------986478899
Q ss_pred HHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 87720358875232565411268898978730237999999870788971--2567689999999959983368898860
Q 001634 726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSN--DLQILDMGLVSQLLCQGKCHWAIYVVLH 803 (1041)
Q Consensus 726 LLkL~~~~~~~~~~L~~il~P~s~t~~plD~rLsW~l~~iL~a~g~~~~~--~~~~Lt~~fA~QLe~~Glw~wAifVllH 803 (1041)
|||||+.. . .++.+|.|++++++||||||+|||+++|+++|+.+.+ ..++||++||+|||+.|+|+|||||+||
T Consensus 620 ll~l~~~~-~---~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~~~~~~~~~~~l~~~~a~qL~~~g~~~~a~fv~~h 695 (753)
T 3jro_A 620 IFQLYAAN-E---NTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 695 (753)
T ss_dssp HHHHHHCS-T---THHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHCCC-C---CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99870588-9---9788626004789877662179999999965977667125778899999999869982248888502
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 6699996268999999999751036787147999999-92999999999999897870999999
Q 001634 804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELSKA 866 (1041)
Q Consensus 804 l~~~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~gd~~~e 866 (1041)
|+|+. .|+.+||++|.|||+.+..++ ..||. +|+||++|||||||+||+|+||++.|
T Consensus 696 ~~~~~----~r~~~i~~~l~r~~~~~~~~~--~~~l~~~l~ip~~wi~~a~a~~~~~~~~~~~e 753 (753)
T 3jro_A 696 LNDDK----AAEDTIKRLVMREITLLRAST--NDHILNRLKIPSQLIFNAQALKDRYEGNYLSE 753 (753)
T ss_dssp CSCHH----HHHHHHHHHHHHSCTTSSTTT--TTTTTTTTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHH----HHHHHHHHHHHHHHHHCCCCH--HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78868----999999999985210317641--53687604989999999999998743881029
No 3
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=1.00 E-value=1 Score=387.30 Aligned_cols=145 Identities=40% Similarity=0.691 Sum_probs=132.3
Q ss_pred CCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCC
Q ss_conf 83259990451897788011348989754458918920322999945433357889655079803479994299999988
Q 001634 42 PVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEV 121 (1041)
Q Consensus 42 p~l~~~~Y~~~Ps~~~L~~~~~~~~g~l~~V~~F~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vY~~~~~kP~~ 121 (1041)
-+|+++||||+|||+||++|+..+ +.| +|+||||||+|||+|+|++||||+++|||+||+|++++|+||||++.|||+
T Consensus 2 i~l~~~~Y~~~PsieeL~~~~~~~-~~~-~V~~FtVgR~gyG~I~f~~pvDl~~ldLd~IV~~~~~~v~VYpd~~~KPpv 79 (155)
T 2q5x_A 2 IILTKVGYYTIPSMDDLAKITNEK-GEC-IVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPV 79 (155)
T ss_dssp CBCCSTTEEEESCHHHHHHHSCTT-SCC-EEEEEEEEETTTEEEEEEEEEECTTCBHHHHEEEETTEEEECC----CCCT
T ss_pred CEEECCCEEECCCHHHHHHHHHHC-CCC-EECCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCEEEEECCCCCCCCC
T ss_conf 278079968868999997531331-243-788889971028999967612330589620899715889995887789999
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCC----HHH-----HHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 877764579999314433337778898----289-----9999999833169989987368859999978753546899
Q 001634 122 GQGLNKAAEVTLFLQGRYLSLKLKEGD----SDD-----FVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSD 191 (1041)
Q Consensus 122 G~gLN~~A~itl~~~~~~~~~~~~~~~----~~~-----~~~~l~~~~~~~~~~f~~y~~~tg~w~F~V~HFSkYGL~D 191 (1041)
|+||||||+|||+ ++|| .++++++ +++ |+++|++.|+++||+||+|||+||+|+|+|+|||+|||+|
T Consensus 80 G~GLN~~A~ITL~-~~~P--~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d 155 (155)
T 2q5x_A 80 GEGLNRKAEVTLD-GVWP--TDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155 (155)
T ss_dssp TBTTBSCEEEEEC-SCCC--BCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred CCCCCCCEEEEEE-EEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 8776848899996-2685--68776760158003346889999999764189999978479868999927855246388
No 4
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=1.00 E-value=1 Score=359.57 Aligned_cols=143 Identities=38% Similarity=0.638 Sum_probs=129.2
Q ss_pred CCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCC
Q ss_conf 79999832599904518977880113489897544589189203229999454333578896550798034799942999
Q 001634 37 NGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDES 116 (1041)
Q Consensus 37 ~~~~~p~l~~~~Y~~~Ps~~~L~~~~~~~~g~l~~V~~F~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vY~~~~ 116 (1041)
+.+..|+|+++||||+|||++|++|+..+ | +++|+||||||+|||+|+|++||||+++|||+||+|++++|+||||+.
T Consensus 36 ~~p~g~~L~~~~Y~~~PSieeL~~~~~~~-~-l~~V~~FtVGR~gyG~I~f~~pVDL~~ldLd~IV~f~~k~v~VYpd~~ 113 (187)
T 1ko6_A 36 MHPAGIILTKVGYYTIPSMDDLAKITNEK-G-ECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDN 113 (187)
T ss_dssp CCSSCCBCCSTTEEEESCHHHHHHHSCTT-S-CCEESSEEEEETTTEEEEECSCEECTTCBHHHHEEEETTEEEESSSTT
T ss_pred CCCCCCEECCCCEEECCCHHHHHHHCCHH-H-HCEECCEEEEEEEEEEEEECCCEEECCCCCCEEEEECCCEEEEECCCC
T ss_conf 48998656689913888999998632043-4-253066699732189999677213226896107996468899948977
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC----HH-----HHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCC
Q ss_conf 99988877764579999314433337778898----28-----9999999983316998998736885999997875
Q 001634 117 SKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGD----SD-----DFVKKMKERTERQGARFVSFDPVSGEWKFLVVHF 184 (1041)
Q Consensus 117 ~kP~~G~gLN~~A~itl~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~f~~y~~~tg~w~F~V~HF 184 (1041)
.|||+|+||||||+|||+ ++|| .+|+++. ++ +|.++|++.++++||+||+|||+||+|+|+|+||
T Consensus 114 ~KPpvG~GLN~pA~ITL~-~~~P--~dk~~~~~i~d~~~~~~~~~~~~l~r~~~~~ga~FvsYd~~tG~W~F~V~HF 187 (187)
T 1ko6_A 114 QKPPVGEGLNRKAEVTLD-GVWP--TDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF 187 (187)
T ss_dssp SCCCTTSTTSSCEEEEEC-SCCC--CCTTTCSCCCCHHHHHHHTHHHHHHHHHHHTTCEEEEEEGGGTEEEEEESCC
T ss_pred CCCCCCCCCCCCEEEEEE-EEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCC
T ss_conf 899998776858899996-3585--6877774115843034778999999987537998998857985899994209
No 5
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=1.00 E-value=1 Score=348.67 Aligned_cols=142 Identities=27% Similarity=0.481 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCC--CCC-----CEEEEE-CCEE
Q ss_conf 99998325999045189778801134898975445891892032299994543335788--965-----507980-3479
Q 001634 38 GDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWL--DLD-----QIVKFG-RHEI 109 (1041)
Q Consensus 38 ~~~~p~l~~~~Y~~~Ps~~~L~~~~~~~~g~l~~V~~F~vgr~g~G~i~f~~~vdl~~~--~ld-----~iV~~~-~~~v 109 (1041)
....|+|+++||||+||+++|++|+..+ |++|+||||||+|||+|+|++||||+++ ||| +||.|+ +++|
T Consensus 11 ~~~~~kl~~~gY~~~PSleeL~~ms~~~---L~~V~nFtVGR~gyG~I~F~~pVDLs~l~~DLd~~l~g~IV~f~~~~~v 87 (174)
T 3kep_A 11 TLQHEKSSSFGYWCSPSPEQLERLSLKQ---LAAVSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTV 87 (174)
T ss_dssp ---------CCEEEESCHHHHHTSCTTG---GGSBSSCEEEETTTEEEEESSCBCCGGGTTCHHHHHBTTTEEEETTTEE
T ss_pred CEECCEECCCCEEECCCHHHHHHCCHHH---HCCCCCEEEEECEEEEEEECCCEEHHHCCCCHHHHCCCCEEEECCCCEE
T ss_conf 1205221789978868999997469988---0566885995111899996885773325010003217868998788779
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH-------HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC
Q ss_conf 9942999999888777645799993144333377788982-------899999999833169989987368859999978
Q 001634 110 VVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDS-------DDFVKKMKERTERQGARFVSFDPVSGEWKFLVV 182 (1041)
Q Consensus 110 ~vY~~~~~kP~~G~gLN~~A~itl~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~f~~y~~~tg~w~F~V~ 182 (1041)
+||||++.|||+|+||||||+|||+ ++|| .+++++++ ..+.+++++.++++||+|++|||+||+|||+|+
T Consensus 88 ~VYpd~~~KPpvG~GLNvpA~ITL~-~~~P--~dk~t~~pi~d~~~l~~~~~~i~rLk~~~g~~FisYd~~tG~W~F~V~ 164 (174)
T 3kep_A 88 EVYPDEATKPMIGHGLNVPAIITLE-NVYP--VDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVN 164 (174)
T ss_dssp EECCSTTTCCCTTSTTCSCEEEEES-SCCC--C----CCCCCCTTCHHHHHHHHHHHHHCSSSEEEEEETTTTEEEEEES
T ss_pred EEECCCCCCCCCCCCCCCCEEEEEE-EEEE--CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEE
T ss_conf 9958877899999876858899996-2583--787777502583016999999999851689989978489858999986
Q ss_pred CCC
Q ss_conf 753
Q 001634 183 HFS 185 (1041)
Q Consensus 183 HFS 185 (1041)
||-
T Consensus 165 H~~ 167 (174)
T 3kep_A 165 HFE 167 (174)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 456
No 6
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=1.00 E-value=1 Score=348.61 Aligned_cols=134 Identities=27% Similarity=0.503 Sum_probs=122.5
Q ss_pred CCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCC----EEEEECCEEEEECCCCCC
Q ss_conf 3259990451897788011348989754458918920322999945433357889655----079803479994299999
Q 001634 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSK 118 (1041)
Q Consensus 43 ~l~~~~Y~~~Ps~~~L~~~~~~~~g~l~~V~~F~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vY~~~~~k 118 (1041)
+|+++||||+||+++|++|++.+ |++|+||||||+|||+|+|++||||+++|||+ ||.|++++|+||||++.|
T Consensus 10 ~lt~~~Y~~~PSleeL~~m~~~~---l~~V~nFtVGR~gyG~I~F~~pVDL~~ldLd~i~g~iV~f~~k~v~VYpd~~~K 86 (164)
T 3nf5_A 10 EFVDENYYISPSLDTLATLSKYE---IQKVENLVVGNKQYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYNNSTNV 86 (164)
T ss_dssp CCCCCSEEEESCHHHHHHCCHHH---HTSBCSCEEEETTTEEEEESSCBCCTTCCGGGTBTTTEEEETTEEEESTTCSCC
T ss_pred EEECCCEEECCCHHHHHHCCHHH---HCCCCCEEEEECEEEEEEECCCEECCCCCHHHHCCCEEEEECCEEEEECCCCCC
T ss_conf 88069978868999997569998---273788499513189999688334155474571698799935899993886789
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCC---------HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 988877764579999314433337778898---------2899999999833169989987368859999978753
Q 001634 119 PEVGQGLNKAAEVTLFLQGRYLSLKLKEGD---------SDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFS 185 (1041)
Q Consensus 119 P~~G~gLN~~A~itl~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~f~~y~~~tg~w~F~V~HFS 185 (1041)
||+|+||||||+|||+ ++|| .+++++. +.+|++||++ ++||+|++|||+||+|||+|+||-
T Consensus 87 PpvG~GLNvpA~ITL~-~~~P--~dk~t~~pi~d~~~~~~~~~i~rLk~---~~g~~FvsYd~~tG~W~F~V~H~~ 156 (164)
T 3nf5_A 87 PEKGKGLNVRARISCY-NCYP--LDKSTRKPIKDPNHRIMERYSEKLKK---IPHTHFESYDPASGTYCFTVDHAL 156 (164)
T ss_dssp CCTTSTTCSCEEEEEC-SCCC--BCTTTCCBCCCTTSTHHHHHHHHHHH---CTTCEEEEEETTTTEEEEEESSTT
T ss_pred CCCCCCCCCCEEEEEE-EEEC--CCCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEEEECCCCEEEEEECCCC
T ss_conf 9999876858899996-4382--89887752158650899999999851---589989878189968999973412
No 7
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=1.00 E-value=1 Score=340.68 Aligned_cols=136 Identities=24% Similarity=0.501 Sum_probs=121.0
Q ss_pred CCCCEEECCCHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCC----EEEEECCEEEEECCCCCCCC
Q ss_conf 59990451897788011348989754458918920322999945433357889655----07980347999429999998
Q 001634 45 CSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSKPE 120 (1041)
Q Consensus 45 ~~~~Y~~~Ps~~~L~~~~~~~~g~l~~V~~F~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vY~~~~~kP~ 120 (1041)
.++||||+|||++|++|+..+ |++|+||||||+|||+|+|++||||+++|||+ ||+|++++|+||||++.|||
T Consensus 1 ~~~~Y~~~PsleeL~~m~~~~---l~~V~~F~VGR~gyG~I~f~~pVDL~~l~Ld~i~g~iV~f~~~~v~VYpd~~~KPp 77 (148)
T 3pbp_B 1 MNENYYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPK 77 (148)
T ss_dssp CCTTEEEESCHHHHHHSCSST---TSSBCSCEEEETTTEEEEESSCBCCTTSCTTHHHHTSEEEETTEEEESCSSCCCCC
T ss_pred CCCCEEECCCHHHHHHCCHHH---HCCCCCEEEEECCEEEEEECCCEECCCCCHHHHCCCEEEEECCEEEEECCCCCCCC
T ss_conf 999818868999997569998---26578839973328999968824504557146169789994589999588668999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCC------HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 8877764579999314433337778898------28999999998331699899873688599999787535
Q 001634 121 VGQGLNKAAEVTLFLQGRYLSLKLKEGD------SDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSR 186 (1041)
Q Consensus 121 ~G~gLN~~A~itl~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~f~~y~~~tg~w~F~V~HFSk 186 (1041)
+|+||||||+|||+ ++|| .+++++. -..+.+++++.++++||+|++|||+||+|+|+|+||.-
T Consensus 78 ~G~GLN~pA~ITL~-~~~P--~dk~t~~~i~d~~~~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~~ 146 (148)
T 3pbp_B 78 RGEGINVRARITCF-NCYP--VDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAAE 146 (148)
T ss_dssp TTSTTCSCEEEEES-CCCC--BCTTTCCBCCCTTSHHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSCC
T ss_pred CCCCCCCCEEEEEE-EEEC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEE
T ss_conf 99876858899996-3482--898776521586358899999998515899899795798689999625620
No 8
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=1.00 E-value=1 Score=47.51 Aligned_cols=321 Identities=12% Similarity=0.103 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HCC
Q ss_conf 35599999999873-19964798777899971466542015999864311102689999999999994223322---001
Q 001634 491 LMHQVMVWELIKVL-FSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQE---DVS 566 (1041)
Q Consensus 491 ~~~e~~VW~L~saL-fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~~lS~WL~~~V~~~v~~---ev~ 566 (1041)
..+...+|..+.|+ |..... ..++. .-..-+.|-+|+......-..+ +|.
T Consensus 175 l~~~l~Il~cl~a~~F~~d~~--------~~~~~------------------~~~~~e~Ll~WVN~~d~eP~~E~~~eVm 228 (570)
T 3f3f_C 175 LEESLTVLNCLRTMYFILDGQ--------DVEEN------------------RSEFIESLLNWINRSDGEPDEEYIEQVF 228 (570)
T ss_dssp HHHHHHHHHHHHHHHSSSTTS--------CGGGG------------------HHHHHHHHHHHHHHHCCCSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCC--------CCCCH------------------HHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999998633077888--------76420------------------3368999999987416999889999998
Q ss_pred CC------C----CCCHHHHHHHHHHCCCHHHHHHHHHHCCC--------CCHH----HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 35------6----78679999999914999999999997599--------7224----6776218990118999999999
Q 001634 567 SL------D----ESNYLKHIFLLLTGRQLDSSVELAASRGD--------VRLA----CLLSQAGGSTVSRSDIAHQLDL 624 (1041)
Q Consensus 567 ~~------~----~~~~le~if~lLsg~~I~eAc~lAi~sgd--------~rLA----tLLsq~gs~~~~r~~l~~QL~~ 624 (1041)
.. . ...++.-+..++.-+..+.|+.+.-.++. .-+. .++..+.+-+... ..|...
T Consensus 229 ~~~~~~~~~~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~~~~~L~~~~~~~~~~i~dli~LL~~yP~~S---~~~fr~ 305 (570)
T 3f3f_C 229 SVKDSTAGKKVFETQYFWKLLNQLVLRGLLSQAIGCIERSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDS---SSTFRE 305 (570)
T ss_dssp TC----CCSSSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTTTTHHHHHSCHHHHHHHHHHHHHHTTCCSSC---HHHHHH
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCC---HHHHHH
T ss_conf 43455679998789328999999998256899999998564402202568379999999999998589876---589999
Q ss_pred HHHCC---------CCCCC---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99849---------87456---7087999999960775445677899899999788752699999999999999988407
Q 001634 625 WRVNG---------LDFKF---IEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDD 692 (1041)
Q Consensus 625 W~~~~---------~d~~~---I~~~rlkIY~LLAG~~~~~~~~~~LdW~ralgL~LWYg~~~~~sI~~ai~~y~~~~~~ 692 (1041)
|+..- ...+. +-+..--||.+|+|+....++-.. +|..+++-.+-|-.|....+. .-|+.++.+
T Consensus 306 WK~~~~e~r~~l~~~~~~i~~ei~~~Ledll~Il~Gd~~~Il~~~~-tWYEal~allLy~~Pt~k~~~---~y~q~al~~ 381 (570)
T 3f3f_C 306 WKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSR-TWYESFCGFLLYYIPSLELSA---EYLQMSLEA 381 (570)
T ss_dssp HHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCS-SHHHHHHHHHHHTCCCGGGHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCC-CHHHHHHHHEEEECCCCCCCH---HHHHHHHHH
T ss_conf 9999999999863565334367899899999998499889998716-499997673134367643369---999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999988544689989987788999888458887720358875232565411268898978730237999999870788
Q 001634 693 GKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVI 772 (1041)
Q Consensus 693 ~~a~~P~P~Y~~~~~~~~~~~~~~~~~~Dl~y~LLkL~~~~~~~~~~L~~il~P~s~t~~plD~rLsW~l~~iL~a~g~~ 772 (1041)
. +|-+ . ....-+|..++. ..-. ..|+.+ ..+|.-+.+|+.-++.+.|.+
T Consensus 382 ~---p~d~-------~--------~~~E~~~~~i~e---gni~--~VL~~l--------q~ld~~~AA~vAdLle~~GlL 430 (570)
T 3f3f_C 382 N---VVDI-------T--------NDWEQPCVDIIS---GKIH--SILPVM--------ESLDSCTAAFTAMICEAKGLI 430 (570)
T ss_dssp S---CCCT-------T--------SSSHHHHHHHHT---TCCG--GGHHHH--------HHHCHHHHHHHHHHHHHHTSS
T ss_pred C---CCCC-------C--------CHHHHHHHHHHC---CCHH--HHHHHH--------HHHHHHHHHHHHHHHHHHCCC
T ss_conf 7---9986-------6--------478999999974---5899--999999--------974388999999999875854
Q ss_pred CCC-------------------H--------HHHHHHHHHHHHHH---CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 971-------------------2--------56768999999995---99833688988606699996268999999999
Q 001634 773 SSN-------------------D--------LQILDMGLVSQLLC---QGKCHWAIYVVLHMPRCDDYPYLQATLIREIL 822 (1041)
Q Consensus 773 ~~~-------------------~--------~~~Lt~~fA~QLe~---~Glw~wAifVllHl~~~~~~~~~R~~avr~lL 822 (1041)
... + ..-+-..||.+|.. ..+|+-||=++.|-+..+. . .-..+|.++|
T Consensus 431 e~~~~~~~~~~~l~~~~~~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~-~-~gr~~IselL 508 (570)
T 3f3f_C 431 ENIFEGEKNSDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTR-S-AKKMVIAELL 508 (570)
T ss_dssp CCCCCC--------------CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCH-H-HHHHHHHHHG
T ss_pred CCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCH-H-HHHHHHHHHH
T ss_conf 3422200110000356654076650476228899999877501244677532699999962875315-6-7799999971
Q ss_pred HHHCCCCCCHHHHHH--HHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
Q ss_conf 751036787147999--999929999--99999999897870999999999998227999
Q 001634 823 FQYCESWSSEESQRK--FIEALGVPS--EWLHEAMAVYYNYYGELSKALEHFLECANWQK 878 (1041)
Q Consensus 823 ~r~~~~~~~~~~~~~--fL~~L~IP~--~WI~eAkAl~a~~~gd~~~e~~~Ll~A~~~~e 878 (1041)
-| .+.-+.++..+. +..+++.|. .=|++-.+.++-++|+...+.-++.+||.+..
T Consensus 509 pr-~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 509 PH-YPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYEL 567 (570)
T ss_dssp GG-CCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------------
T ss_pred CC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf 54-899978999999999997799389999999999999977628899999997087120
No 9
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=40.58 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 67999999991499999999999759972246776218990118999999999-99849874567087999999960775
Q 001634 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDL-WRVNGLDFKFIEKDRIRLYELLAGHI 650 (1041)
Q Consensus 572 ~~le~if~lLsg~~I~eAc~lAi~sgd~rLAtLLsq~gs~~~~r~~l~~QL~~-W~~~~~d~~~I~~~rlkIY~LLAG~~ 650 (1041)
...++|-.+|..++.++|++.|++.+..=.|++|+..+|.+..++-+++=+.. -...+...+.+.....-||++++|+.
T Consensus 152 ~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~ 231 (441)
T 3mzk_B 152 NCQMRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNS 231 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCH
T ss_conf 89999999997699999999998588589999999733999999999999986346677664331319999999985987
Q ss_pred CCCCCCC---------C-CCHHHHHHHHHHCCCCCC
Q ss_conf 4456778---------9-989999978875269999
Q 001634 651 HSSLNDV---------T-IDWKRFLGLLMWYQLPPE 676 (1041)
Q Consensus 651 ~~~~~~~---------~-LdW~ralgL~LWYg~~~~ 676 (1041)
...+... + -+|+-.+++-|=|..+.+
T Consensus 232 ~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~ 267 (441)
T 3mzk_B 232 KMAIKSFYTNNETSQWASENWKSIVAAVLINIPENN 267 (441)
T ss_dssp HHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 999988425776552167689999999996789712
No 10
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=1.00 E-value=1 Score=37.59 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 86799999999149999999999975997224677621899011899999999999849874567087999999960775
Q 001634 571 SNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (1041)
Q Consensus 571 ~~~le~if~lLsg~~I~eAc~lAi~sgd~rLAtLLsq~gs~~~~r~~l~~QL~~W~~~~~d~~~I~~~rlkIY~LLAG~~ 650 (1041)
.+..+.|-..|..+++++|++++++.+-+-=|++|+..||.+..+.-. |-.--++.. . .++...-||.+.+|+.
T Consensus 144 ~~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~v--q~~Y~~k~~-~---~~~~~rll~~iv~~n~ 217 (399)
T 2pm7_A 144 GNIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESV--KNAYFAKYG-S---KSSLSRILYSISKREV 217 (399)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHH--HHHHHHHHT-T---SCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH--HHHHHHHCC-C---CCHHHHHHHHHHCCCH
T ss_conf 568999999998599999999999779738899999846978899999--999998624-6---7669999999981699
Q ss_pred CCCCCCCCC-CHHHHHHHHHHCCC
Q ss_conf 445677899-89999978875269
Q 001634 651 HSSLNDVTI-DWKRFLGLLMWYQL 673 (1041)
Q Consensus 651 ~~~~~~~~L-dW~ralgL~LWYg~ 673 (1041)
...+...+| +|+-+|++-+=|..
T Consensus 218 ~d~V~~~~l~~WkE~La~i~t~a~ 241 (399)
T 2pm7_A 218 DDLVENLDVSQWKFISKAIQNLYP 241 (399)
T ss_dssp HHHHHHBCGGGHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 999760775249999999996699
Done!