Query 001635
Match_columns 1040
No_of_seqs 633 out of 5807
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 15:52:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001635.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_934-937//hhsearch_pdb/001635hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 410.0 25.0 249 764-1017 27-281 (311)
2 3v5w_A G-protein coupled recep 1.0 1 1 403.4 25.8 247 765-1011 185-437 (689)
3 4b9d_A Serine/threonine-protei 1.0 1 1 395.2 23.9 254 767-1026 22-282 (350)
4 4fie_A Serine/threonine-protei 1.0 1 1 393.9 26.1 256 769-1032 151-412 (423)
5 4fih_A Serine/threonine-protei 1.0 1 1 393.8 24.6 255 769-1031 74-334 (346)
6 3ubd_A Ribosomal protein S6 ki 1.0 1 1 390.1 24.6 256 765-1024 20-285 (304)
7 3hyh_A Carbon catabolite-derep 1.0 1 1 387.6 23.8 254 767-1026 11-268 (275)
8 2j4o_A Mitogen-activated prote 1.0 1 1 383.8 21.1 262 95-389 27-368 (401)
9 1a6q_A Phosphatase 2C; catalyt 1.0 1 1 382.0 23.5 270 75-391 2-296 (382)
10 2p8e_A PPM1B beta isoform vari 1.0 1 1 381.0 23.8 270 75-391 4-302 (307)
No 1
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=410.02 Aligned_cols=249 Identities=28% Similarity=0.396 Sum_probs=228.9
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEECCC
Q ss_conf 34464671899887235965999999957996899999404321341158999998600011688650020015640588
Q 001635 764 AKVSLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSM 843 (1040)
Q Consensus 764 ~~~~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~~~ 843 (1040)
.....+||++++.||+|+||.||+|+++.+++.||+|++.+...........+.+|+.+|++++|+++| +++++|++++
T Consensus 27 ~~~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv-~l~~~~~~~~ 105 (311)
T 4aw0_A 27 RKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFV-KLYFTFQDDE 105 (311)
T ss_dssp CCCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBC-CEEEEEECSS
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEECC
T ss_conf 888852368988983164849999999999989999998888877978999999999999867998989-1999997389
Q ss_pred EEEEEEEECCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCC-
Q ss_conf 1999995047999678841--8999999999999999999999875935147888908984799499992254323599-
Q 001635 844 HAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG- 920 (1040)
Q Consensus 844 ~~~lv~e~~~g~~L~~~l~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~- 920 (1040)
++|+||||+.||+|.+++. +.+++..++.|+.|++.||+|||++||+||||||+|||++.++.+||+|||+|+.+..
T Consensus 106 ~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 106 KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp EEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 89999964899899999987499999999999999999999999887826878789969858988899876875025778
Q ss_pred ---CCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf ---97311247665028501348989825669999999999970999999999999999999991899999999988999
Q 001635 921 ---NRTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVD 997 (1040)
Q Consensus 921 ---~~~~~~~gt~~y~aPE~i~~~~~~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ 997 (1040)
....++|||+.|||||++.+..|+.++|||||||++|+|++|+.||.+ .+..+++.+|....+.+|..+++++++
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~d 263 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA--GNEGLIFAKIIKLEYDFPEKFFPKARD 263 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 776543675568030799897689999689899899999999749899899--799999999971999999656999999
Q ss_pred HHHHHHCCCCCCCCCCHHHH
Q ss_conf 99980001827468863332
Q 001635 998 LLTKLMKIQDLVAKVPLLSK 1017 (1040)
Q Consensus 998 lI~~lL~~dP~~R~~p~~~~ 1017 (1040)
||++||..||.+| +.+++
T Consensus 264 li~~lL~~dp~~R--~t~~e 281 (311)
T 4aw0_A 264 LVEKLLVLDATKR--LGCEE 281 (311)
T ss_dssp HHHHHSCSSGGGS--TTSGG
T ss_pred HHHHHCCCCHHHC--CCHHH
T ss_conf 9999762897578--09679
No 2
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=403.36 Aligned_cols=247 Identities=23% Similarity=0.406 Sum_probs=221.3
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCC--CCCEECCEEEEEECC
Q ss_conf 446467189988723596599999995799689999940432134115899999860001168--865002001564058
Q 001635 765 KVSLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVS--PSACVPQILCTCADS 842 (1040)
Q Consensus 765 ~~~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~--~~~~i~~l~~~~~~~ 842 (1040)
.++++||++++.||+|+||.||+|+++.+++.||+|++.|..+........+..|..++..+. +||+|++++++|++.
T Consensus 185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~ 264 (689)
T 3v5w_A 185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP 264 (689)
T ss_dssp CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred CCCHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 99568928888983164839999999999989999997578825255689999999999999648999871799999989
Q ss_pred CEEEEEEEECCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 81999995047999678841--8999999999999999999999875935147888908984799499992254323599
Q 001635 843 MHAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG 920 (1040)
Q Consensus 843 ~~~~lv~e~~~g~~L~~~l~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~ 920 (1040)
.++|+||||+.||+|..++. +.+++..+++|+.||+.||+|||++||+||||||+|||++.+|++||+|||+|+.+..
T Consensus 265 ~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~ 344 (689)
T 3v5w_A 265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK 344 (689)
T ss_dssp SEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred CEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEEECCCCEEEECCC
T ss_conf 98899994689982999998669999999999999999999999978854168866875980899889645655666378
Q ss_pred CCCCCCCCCCCEECCEEEC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9731124766502850134-8989825669999999999970999999999-9999999999918999999999889999
Q 001635 921 NRTFTICGMADYLAPEIVQ-GKGHGLAADWWALGVLIYFMLQGEMPFGSWR-ESEIDIVAKIAKGQLSLPQNLSPEAVDL 998 (1040)
Q Consensus 921 ~~~~~~~gt~~y~aPE~i~-~~~~~~~~DiwsLGill~elltg~~Pf~~~~-~~~~~~~~~i~~~~~~~p~~~~~~~~~l 998 (1040)
....+.|||+.|||||++. +.+|+.++|||||||++|+|++|+.||.+.. .+...++..+....+.+|..+++++.+|
T Consensus 345 ~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dL 424 (689)
T 3v5w_A 345 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSL 424 (689)
T ss_dssp CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 98777657867318899847999995999999999999998687999999867799999850579888876699999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9980001827468
Q 001635 999 LTKLMKIQDLVAK 1011 (1040)
Q Consensus 999 I~~lL~~dP~~R~ 1011 (1040)
|.+||..||.+|.
T Consensus 425 I~~lL~~dP~~Rl 437 (689)
T 3v5w_A 425 LEGLLQRDVNRRL 437 (689)
T ss_dssp HHHHTCSCGGGCT
T ss_pred HHHHCCCCHHHCC
T ss_conf 9997608986879
No 3
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=395.20 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=226.5
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEECCCEEE
Q ss_conf 64671899887235965999999957996899999404321341158999998600011688650020015640588199
Q 001635 767 SLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAG 846 (1040)
Q Consensus 767 ~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~~~~~~ 846 (1040)
.+++|++++.||+|+||.||+|+++.+++.||+|++.+.... ....+.+.+|+.+|++|+|+++| ++++++.+++.+|
T Consensus 22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV-~~~~~~~~~~~~y 99 (350)
T 4b9d_A 22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIV-QYRESFEENGSLY 99 (350)
T ss_dssp CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBC-CEEEEEEETTEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC-HHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEE
T ss_conf 512558847970277939999998899989999998658789-79999999999999877998989-1999999899999
Q ss_pred EEEEECCCCCHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCCC-
Q ss_conf 9995047999678841----89999999999999999999998759351478889089847994999922543235999-
Q 001635 847 LLLNTYLACPLASILH----TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSGN- 921 (1040)
Q Consensus 847 lv~e~~~g~~L~~~l~----~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~~- 921 (1040)
+||||+.||+|.+++. ..+++..++.|+.|++.||.|||++||+||||||+|||++.+|.+||+|||+|+.+...
T Consensus 100 iVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp EEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 99948899839999997389999789999999999999999998991513597899798789998976465214406885
Q ss_pred -CCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCHHHHHHH
Q ss_conf -7311247665028501348989825669999999999970999999999999999999991899-99999998899999
Q 001635 922 -RTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQL-SLPQNLSPEAVDLL 999 (1040)
Q Consensus 922 -~~~~~~gt~~y~aPE~i~~~~~~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~~-~~p~~~~~~~~~lI 999 (1040)
...+.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+ .+..+++.+|..+.. .++..+++++.+||
T Consensus 180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~~~~~~s~~~~~li 257 (350)
T 4b9d_A 180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA--GSMKNLVLKIISGSFPPVSLHYSYDLRSLV 257 (350)
T ss_dssp HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCCCCTTSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 410145788360399998799989599999999999999978799899--699999999980899999755799999999
Q ss_pred HHHHCCCCCCCCCCHHHHCCCCCHHHC
Q ss_conf 980001827468863332013410231
Q 001635 1000 TKLMKIQDLVAKVPLLSKLTHGSEMLI 1026 (1040)
Q Consensus 1000 ~~lL~~dP~~R~~p~~~~l~~~~~~~~ 1026 (1040)
.+||..||.+| |+++++..+.|+..
T Consensus 258 ~~~L~~dP~~R--~s~~e~l~hp~~~~ 282 (350)
T 4b9d_A 258 SQLFKRNPRDR--PSVNSILEKGFIAK 282 (350)
T ss_dssp HHHTCSSGGGS--CCHHHHHTSHHHHT
T ss_pred HHHCCCCHHHC--CCHHHHHCCHHHHC
T ss_conf 99855896679--08999963997616
No 4
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=393.94 Aligned_cols=256 Identities=19% Similarity=0.307 Sum_probs=226.6
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEECCCEEEEE
Q ss_conf 67189988723596599999995799689999940432134115899999860001168865002001564058819999
Q 001635 769 TDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAGLL 848 (1040)
Q Consensus 769 ~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~~~~~~lv 848 (1040)
+.|++++.||+|+||.||+|+++.+++.||+|++.+... ...+.+.+|+.+|+.++|+++| +++++|.+.+.+|+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV-~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVV-EMYNSYLVGDELWVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC---SSGGGHHHHHHHHHHCCCTTBC-CEEEEEEETTEEEEE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEEEE
T ss_conf 843861696248184899999999998999999862554---6899999999999857998987-168999989999999
Q ss_pred EEECCCCCHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCC--CCCCC
Q ss_conf 95047999678841-8999999999999999999999875935147888908984799499992254323599--97311
Q 001635 849 LNTYLACPLASILH-TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG--NRTFT 925 (1040)
Q Consensus 849 ~e~~~g~~L~~~l~-~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~--~~~~~ 925 (1040)
|||+.||+|.+++. ..+++..++.|+.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+.+.. ....+
T Consensus 227 mEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 306 (423)
T 4fie_A 227 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS 306 (423)
T ss_dssp EECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCC
T ss_pred EECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCC
T ss_conf 96989982898876169899999999999999999999889044657877789858999898037265477788764346
Q ss_pred CCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 24766502850134898982566999999999997099999999999999999999189---999999998899999980
Q 001635 926 ICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQ---LSLPQNLSPEAVDLLTKL 1002 (1040)
Q Consensus 926 ~~gt~~y~aPE~i~~~~~~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~lI~~l 1002 (1040)
.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+ .+..+.+..|.... +..+..+++++.+||.+|
T Consensus 307 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~ 384 (423)
T 4fie_A 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRL 384 (423)
T ss_dssp CEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 6647472799997799999689999999999999978799898--69999999997279988765012999999999998
Q ss_pred HCCCCCCCCCCHHHHCCCCCHHHCCCCHHH
Q ss_conf 001827468863332013410231453357
Q 001635 1003 MKIQDLVAKVPLLSKLTHGSEMLIGKGLLN 1032 (1040)
Q Consensus 1003 L~~dP~~R~~p~~~~l~~~~~~~~~~~~~~ 1032 (1040)
|..||.+| |.++++..+.|+.......+
T Consensus 385 L~~dP~~R--~ta~ell~Hp~~~~~~~p~~ 412 (423)
T 4fie_A 385 LVRDPAQR--ATAAELLKHPFLAKAGPPAS 412 (423)
T ss_dssp SCSSTTTS--CCHHHHTTCGGGGGCCCGGG
T ss_pred CCCCHHHC--CCHHHHHCCHHHCCCCCCCC
T ss_conf 67895689--09999960987568999755
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=393.75 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=225.7
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEECCCEEEEE
Q ss_conf 67189988723596599999995799689999940432134115899999860001168865002001564058819999
Q 001635 769 TDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAGLL 848 (1040)
Q Consensus 769 ~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~~~~~~lv 848 (1040)
+.|++++.||+|+||.||+|+++.+++.||+|++.+.... ..+.+.+|+.+|+.++|+++| +++++|.+++.+|+|
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIV-~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ---RRELLFNEVVIMRDYQHENVV-EMYNSYLVGDELWVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS---SGGGGHHHHHHHHHCCCTTBC-CEEEEEEETTEEEEE
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHH---HHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEEEE
T ss_conf 7538707960272829999999899989999998527656---899999999999867998999-199999989999999
Q ss_pred EEECCCCCHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCC--CCCCC
Q ss_conf 95047999678841-8999999999999999999999875935147888908984799499992254323599--97311
Q 001635 849 LNTYLACPLASILH-TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG--NRTFT 925 (1040)
Q Consensus 849 ~e~~~g~~L~~~l~-~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~--~~~~~ 925 (1040)
|||+.||+|.+++. ..+++..++.|+.|++.||.|||++||+||||||+|||++.+|.+||+|||+|+.+.. ....+
T Consensus 150 mEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 229 (346)
T 4fih_A 150 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS 229 (346)
T ss_dssp ECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred EECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCC
T ss_conf 96989980899987189899999999999999999999888355627889978879998899027575366788775346
Q ss_pred CCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHH
Q ss_conf 247665028501348989825669999999999970999999999999999999991899---99999998899999980
Q 001635 926 ICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQL---SLPQNLSPEAVDLLTKL 1002 (1040)
Q Consensus 926 ~~gt~~y~aPE~i~~~~~~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~lI~~l 1002 (1040)
.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+ .+..+++..|..... ..+..+++++.+||.+|
T Consensus 230 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~ 307 (346)
T 4fih_A 230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRL 307 (346)
T ss_dssp CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5627582799997799999689999999999999978799898--59999999997179998875022999999999998
Q ss_pred HCCCCCCCCCCHHHHCCCCCHHHCCCCHH
Q ss_conf 00182746886333201341023145335
Q 001635 1003 MKIQDLVAKVPLLSKLTHGSEMLIGKGLL 1031 (1040)
Q Consensus 1003 L~~dP~~R~~p~~~~l~~~~~~~~~~~~~ 1031 (1040)
|..||.+| |.++++..+.|+.....-.
T Consensus 308 L~~dP~~R--~ta~e~l~Hp~~~~~~~p~ 334 (346)
T 4fih_A 308 LVRDPAQR--ATAAELLKHPFLAKAGPPA 334 (346)
T ss_dssp SCSSTTTS--CCHHHHTTCGGGGGCCCGG
T ss_pred CCCCHHHC--CCHHHHHCCHHHCCCCCCC
T ss_conf 67995689--0999996098656899976
No 6
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=390.05 Aligned_cols=256 Identities=29% Similarity=0.501 Sum_probs=224.4
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEC---CCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEEC
Q ss_conf 446467189988723596599999995---79968999994043213411589999986000116886500200156405
Q 001635 765 KVSLTDMEWRKCLYSTDCSEIGLVLLR---DSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCAD 841 (1040)
Q Consensus 765 ~~~~~~~~i~~~Lg~G~~g~V~~~~~~---~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~ 841 (1040)
....++|++++.||+|+||.||+|++. .+++.||+|++.+...... ....+.+|+.+|++++|+++| ++++++.+
T Consensus 20 ~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv-~l~~~~~~ 97 (304)
T 3ubd_A 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIV-KLHYAFQT 97 (304)
T ss_dssp CCCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEE-CEEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHH-HHHHHHHHHHHHHHCCCCCCC-EEEEEEEE
T ss_conf 3895565898897218883999999855887897999999815776847-899999999999877997999-09999998
Q ss_pred CCEEEEEEEECCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCC
Q ss_conf 881999995047999678841--899999999999999999999987593514788890898479949999225432359
Q 001635 842 SMHAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLS 919 (1040)
Q Consensus 842 ~~~~~lv~e~~~g~~L~~~l~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~ 919 (1040)
++.+|+||||+.||+|.+++. +.+++..++.|+.|++.||.|||++||+||||||+|||++.+|.+||+|||+|+...
T Consensus 98 ~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 98 EGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp TTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCEECC
T ss_conf 99999999757998889999755999999999999999999999997799588887899578689988762366343326
Q ss_pred C--CCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9--97311247665028501348989825669999999999970999999999999999999991899999999988999
Q 001635 920 G--NRTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVD 997 (1040)
Q Consensus 920 ~--~~~~~~~gt~~y~aPE~i~~~~~~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ 997 (1040)
. ....+.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+ .+..+++..|.+..+.+|..+|+++.+
T Consensus 178 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~~ 255 (304)
T 3ubd_A 178 DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG--KDRKETMTMILKAKLGMPQFLSPEAQS 255 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 887630454418150799996568878777636119999999859899898--499999999971899998768999999
Q ss_pred HHHHHHCCCCCCCCCC---HHHHCCCCCHH
Q ss_conf 9998000182746886---33320134102
Q 001635 998 LLTKLMKIQDLVAKVP---LLSKLTHGSEM 1024 (1040)
Q Consensus 998 lI~~lL~~dP~~R~~p---~~~~l~~~~~~ 1024 (1040)
||++||..||.+|... .++++..++|+
T Consensus 256 li~~~L~~dP~~R~ta~~~~~~eil~Hp~f 285 (304)
T 3ubd_A 256 LLRMLFKRNPANRLGAGPDGVEEIKRHSFF 285 (304)
T ss_dssp HHHHHTCSSGGGSTTCSTTTHHHHHTSGGG
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHCCCCC
T ss_conf 999986469878799986789999769040
No 7
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=387.63 Aligned_cols=254 Identities=21% Similarity=0.359 Sum_probs=229.9
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEECCEEEEEECCCEEE
Q ss_conf 64671899887235965999999957996899999404321341158999998600011688650020015640588199
Q 001635 767 SLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAG 846 (1040)
Q Consensus 767 ~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~k~~~~~~~~~~~~~~E~~il~~l~~~~~i~~l~~~~~~~~~~~ 846 (1040)
.+++|++++.||+|+||.||+|+++.+++.||+|++.+...........+.+|+.++++++|+++| ++++++.++..+|
T Consensus 11 ~ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv-~~~~~~~~~~~~~ 89 (275)
T 3hyh_A 11 HIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHII-KLYDVIKSKDEII 89 (275)
T ss_dssp ---CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBC-CEEEEEECSSEEE
T ss_pred EEECEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEECCEEE
T ss_conf 933868999982176819999999999989999998378867878999999999999877998999-2999999899899
Q ss_pred EEEEECCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCC-CCC
Q ss_conf 9995047999678841--8999999999999999999999875935147888908984799499992254323599-973
Q 001635 847 LLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG-NRT 923 (1040)
Q Consensus 847 lv~e~~~g~~L~~~l~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIlid~~g~ikL~Dfg~a~~~~~-~~~ 923 (1040)
+||||+ +|+|.+++. +++++..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+.... ...
T Consensus 90 ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~ 168 (275)
T 3hyh_A 90 MVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFL 168 (275)
T ss_dssp EEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred EEEECC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 999278-9978999987499999999999999999999999889306668758768879998999454777266788746
Q ss_pred CCCCCCCCEECCEEECCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11247665028501348989-82566999999999997099999999999999999999189999999998899999980
Q 001635 924 FTICGMADYLAPEIVQGKGH-GLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVDLLTKL 1002 (1040)
Q Consensus 924 ~~~~gt~~y~aPE~i~~~~~-~~~~DiwsLGill~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~lI~~l 1002 (1040)
.+.+||+.|+|||++.+..+ +.++||||||+++|+|++|+.||.+ .+...+++.+..+...+|..+++++.+||.+|
T Consensus 169 ~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~ 246 (275)
T 3hyh_A 169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD--ESIPVLFKNISNGVYTLPKFLSPGAAGLIKRM 246 (275)
T ss_dssp ------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7702893527745506898889836568789999999988799899--89999999997499999877999999999998
Q ss_pred HCCCCCCCCCCHHHHCCCCCHHHC
Q ss_conf 001827468863332013410231
Q 001635 1003 MKIQDLVAKVPLLSKLTHGSEMLI 1026 (1040)
Q Consensus 1003 L~~dP~~R~~p~~~~l~~~~~~~~ 1026 (1040)
|+.||.+| |+++++..+.|+..
T Consensus 247 L~~dP~~R--~s~~eil~hpw~k~ 268 (275)
T 3hyh_A 247 LIVNPLNR--ISIHEIMQDDWFKV 268 (275)
T ss_dssp SCSSGGGS--CCHHHHHHCHHHHT
T ss_pred CCCCHHHC--CCHHHHHCCCCCCC
T ss_conf 65896689--19999971920065
No 8
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=1.00 E-value=1 Score=383.77 Aligned_cols=262 Identities=24% Similarity=0.356 Sum_probs=217.4
Q ss_pred EEEEEEECCCCCCCCCCC---CCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC----CCCHH
Q ss_conf 999997225358999988---76541887458789898479999528992039999999999999998227----85045
Q 001635 95 LRYSFLSQRGYYPDALDK---ANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNN----KFHED 167 (1040)
Q Consensus 95 ~~~~~~s~~G~~~~~~r~---~neD~~~~~~~~~~~~~~~~f~V~DGhG~~G~~aa~~~~~~l~~~l~~~~----~~~~~ 167 (1040)
+.++.++++|||+.+.++ .|||++++... ..+..||||||||| |+.+|+||+++++..|.+.. ....+
T Consensus 27 ~~~G~~~~~G~r~~g~~~~r~~nED~~~~~~~---~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~~~~~~~~~~ 101 (401)
T 2j4o_A 27 SGVGSASNRSYSADGKGTESHPPEDSWLKFRS---ENNCFLYGVFNGYD--GNRVTNFVAQRLSAELLLGQLNAEHAEAD 101 (401)
T ss_dssp EEEEEECCEEECSSSSCEECCCCCEEEEEEEE---TTTEEEEEEEEEES--SSHHHHHHHHHHHHTTSSSSCCTTSCHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEEECC---CCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 75457843532545666677888865799608---99849999974999--77999999999999999856410344164
Q ss_pred HHHHHHHHHHHHHHHHHHCC-------------------------------------CCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 99999999985318776301-------------------------------------68889862199999969979999
Q 001635 168 AVDACHSSYLTTNSQLHADV-------------------------------------LDDSMSGTTAVTVLVRGRTIYVA 210 (1040)
Q Consensus 168 ~~~~l~~a~~~~~~~~~~~~-------------------------------------~~~~~~GtTa~~~~i~~~~l~va 210 (1040)
+.++|..+|..+|..+.+.. .....+||||++++|.++++|||
T Consensus 102 ~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~va 181 (401)
T 2j4o_A 102 VRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVA 181 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 99999999999999999988898753200012355554221011111002222201346678865779999989988999
Q ss_pred ECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82567289996419827988099888999953899999809951112323466688855688888899999943334888
Q 001635 211 NSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGM 290 (1040)
Q Consensus 211 nvGDSRa~l~~~~~~~~~~~~lt~dH~~~~~~E~~ri~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1040)
||||||||+++.+.+++.+.+||.||+|.++.|++||..+||.+.... ..++
T Consensus 182 nvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~----------------------------~~r~ 233 (401)
T 2j4o_A 182 NVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIK----------------------------QVGI 233 (401)
T ss_dssp EESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHHHHTTTCCHHHHH----------------------------HHCC
T ss_pred ECCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEECC----------------------------CCCC
T ss_conf 726846999981799866887999999998789999997099755334----------------------------7501
Q ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCEEE-EEECCCCCEEEEECCCCCCCC--------CHHHHHHHH
Q ss_conf 57643333468554542-------------49252152699-991899988999827521124--------857899997
Q 001635 291 YPGTAFTRSIGDSIAET-------------IGVVANPEIVV-WELTNDHPFFVLASDGVFEFL--------SSQAVVDMV 348 (1040)
Q Consensus 291 ~~gl~~tRalGD~~~k~-------------~~v~~~P~v~~-~~l~~~d~flilaSDGl~d~l--------~~~ei~~~v 348 (1040)
.++|++||||||..+|. .+++++|||.. +.+.++|+|||||||||||++ +++|+++++
T Consensus 234 ~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v 313 (401)
T 2j4o_A 234 ICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMI 313 (401)
T ss_dssp BTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 48734651108886624654332334567897654665877488479996999975414334013245788999999999
Q ss_pred HC----CCCHHHHHHHHHHHHHHHHHH--HCCC--------CCCEEEEEEEECCC
Q ss_conf 50----599689999999999999983--0899--------99948999990686
Q 001635 349 AK----YKDPRDACAAIVAESYRLWLQ--YETR--------TDDITVIVVHINGL 389 (1040)
Q Consensus 349 ~~----~~~~~~~a~~lv~~a~~~~~~--~~~~--------~DniT~ivv~~~~~ 389 (1040)
.. ..+++.+|+.|++.|+..|.. .+|+ .||||||||+|...
T Consensus 314 ~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G~~~~~~~~~~DNiTvivv~~~~~ 368 (401)
T 2j4o_A 314 DTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYP 368 (401)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSCSSGGGGCSEECCEEEEEEEEBCC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 9998627999999999999999850233304774335678999859999983798
No 9
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=1.00 E-value=1 Score=381.97 Aligned_cols=270 Identities=24% Similarity=0.407 Sum_probs=225.0
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6544999983157508964799999722535899998876541887458789-898479999528992039999999999
Q 001635 75 SQFLPPEGSRTVKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRK 153 (1040)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~~~~~~~~-~~~~~~f~V~DGhG~~G~~aa~~~~~~ 153 (1040)
..||+.+...+.........++|+++|++|+ |..|||++++...... ..++.+|+|||||| |+.+|++++++
T Consensus 2 g~~l~~p~~~k~~~~~~~~~l~~g~~s~~G~-----R~~nEDa~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~ 74 (382)
T 1a6q_A 2 GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGW-----RVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEH 74 (382)
T ss_dssp CCCCSSCEEEEEEEEEEETTEEEEEEEEEET-----SSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCCCEEEEECCCCCCCCCEEEEEEECCCC--CHHHHHHHHHH
T ss_conf 7566677525545668888538999944789-----8777861699547888888769999985888--68999999999
Q ss_pred HHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEE
Q ss_conf 9999982278--------504599999999985318776301---68889862199999969979999825672899964
Q 001635 154 LCENLLRNNK--------FHEDAVDACHSSYLTTNSQLHADV---LDDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAER 222 (1040)
Q Consensus 154 l~~~l~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~~---~~~~~~GtTa~~~~i~~~~l~vanvGDSRa~l~~~ 222 (1040)
+++.|..... ....+..+|..+|..+|..+.... .....+|||++++++.++++|||||||||+|++|.
T Consensus 75 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r~ 154 (382)
T 1a6q_A 75 LLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN 154 (382)
T ss_dssp HHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEC
T ss_conf 99999850665405777777899999999999999999864540357788864299999989948999847875999979
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 19827988099888999953899999809951112323466688855688888899999943334888576433334685
Q 001635 223 RGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGD 302 (1040)
Q Consensus 223 ~~~~~~~~~lt~dH~~~~~~E~~ri~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~tRalGD 302 (1040)
+ .+.+||.||+|.++.|++||..+||.+.. .+..+.|++||||||
T Consensus 155 g----~~~~LT~DHs~~~~~E~~RI~~~gg~v~~-------------------------------~Rv~g~l~ltRalGd 199 (382)
T 1a6q_A 155 R----KVHFFTQDHKPSNPLEKERIQNAGGSVMI-------------------------------QRVNGSLAVSRALGD 199 (382)
T ss_dssp T----EEEEECCCCCTTSHHHHHHHHHTTCCEET-------------------------------TEETTTBSCSBCEEC
T ss_pred C----CEEEECCCCCCCCHHHHHHHHHCCCEEEC-------------------------------CCCCCCEEEEEECCC
T ss_conf 9----15781789989998899999866967751-------------------------------331584101011376
Q ss_pred CCCCCC--------CEEECCCEEEEEEC-CCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 545424--------92521526999918-9998899982752112485789999750----5996899999999999999
Q 001635 303 SIAETI--------GVVANPEIVVWELT-NDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAESYRLW 369 (1040)
Q Consensus 303 ~~~k~~--------~v~~~P~v~~~~l~-~~d~flilaSDGl~d~l~~~ei~~~v~~----~~~~~~~a~~lv~~a~~~~ 369 (1040)
..+|.. .|+++|+|..+.+. ++|+|||||||||||+++++++++++.. ..+++.+|+.|++.|+.
T Consensus 200 ~~~K~~~~~~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~-- 277 (382)
T 1a6q_A 200 FDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLY-- 277 (382)
T ss_dssp GGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH--
T ss_pred HHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--
T ss_conf 754046667876673666436999980378983999966675678875999999999874479899999999999986--
Q ss_pred HHHCCCCCCEEEEEEEECCCCC
Q ss_conf 8308999994899999068655
Q 001635 370 LQYETRTDDITVIVVHINGLKN 391 (1040)
Q Consensus 370 ~~~~~~~DniT~ivv~~~~~~~ 391 (1040)
+|+.||||||||++.+.+.
T Consensus 278 ---~g~~DNiTvivv~~~~~~~ 296 (382)
T 1a6q_A 278 ---KGSRDNMSVILICFPNAPK 296 (382)
T ss_dssp ---TTCCSCEEEEEEECTTSCC
T ss_pred ---CCCCCCEEEEEEEECCCCC
T ss_conf ---2996887999999158888
No 10
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=1.00 E-value=1 Score=381.01 Aligned_cols=270 Identities=24% Similarity=0.411 Sum_probs=225.9
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6544999983157508964799999722535899998876541887458789-898479999528992039999999999
Q 001635 75 SQFLPPEGSRTVKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRK 153 (1040)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~~~~~~~~-~~~~~~f~V~DGhG~~G~~aa~~~~~~ 153 (1040)
..+++.+...+......+..++|+.+|++|+ |..|||++++...... ..+..+|+|||||| |+.+|+++++.
T Consensus 4 g~~l~~p~~~~~~~~~~~~~~~~~~~s~~G~-----R~~nED~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~a~~as~~ 76 (307)
T 2p8e_A 4 GAFLDKPKTEKHNAHGAGNGLRYGLSSMQGW-----RVEMEDAHTAVVGIPHGLEDWSFFAVYDGHA--GSRVANYCSTH 76 (307)
T ss_dssp --CCSSCEEEEEEEEEEETTEEEEEEEEEET-----SSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCCCEEEEEECCCCCCCCEEEEEEECCCC--CHHHHHHHHHH
T ss_conf 3356778511213567778704999852789-----9765545789724788988769999978989--99999999999
Q ss_pred HHHHHHHCCCC-------------CHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCEEEEEEEECCEEEEEECCCCEE
Q ss_conf 99999822785-------------04599999999985318776301---688898621999999699799998256728
Q 001635 154 LCENLLRNNKF-------------HEDAVDACHSSYLTTNSQLHADV---LDDSMSGTTAVTVLVRGRTIYVANSGDSRA 217 (1040)
Q Consensus 154 l~~~l~~~~~~-------------~~~~~~~l~~a~~~~~~~~~~~~---~~~~~~GtTa~~~~i~~~~l~vanvGDSRa 217 (1040)
+.+.+.+...+ ..++..+|..+|..+|..+.+.. .....+|||++++++.++++|||||||||+
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa 156 (307)
T 2p8e_A 77 LLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRA 156 (307)
T ss_dssp HHHHHHTSTTTC-----------CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCEE
T ss_conf 99999865766404544444434679999999999999999998515412577898871899999789189997368579
Q ss_pred EEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99964198279880998889999538999998099511123234666888556888888999999433348885764333
Q 001635 218 VLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFT 297 (1040)
Q Consensus 218 ~l~~~~~~~~~~~~lt~dH~~~~~~E~~ri~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~t 297 (1040)
|++|++ .+.+||.||+|.++.|++||..+||.+.. .+..+.|++|
T Consensus 157 ~l~r~g----~~~~lT~DH~~~~~~E~~rI~~~gg~v~~-------------------------------~rv~g~l~lt 201 (307)
T 2p8e_A 157 VLYRNG----QVCFSTQDHKPCNPREKERIQNAGGSVMI-------------------------------QRVNGSLAVS 201 (307)
T ss_dssp EEEETT----EEEEECCCCCTTSHHHHHHHHHTTCCEET-------------------------------TEETTTBSCS
T ss_pred EEEECC----CCCCCCCCCCCCCHHHHHHHHHCCCEEEE-------------------------------CCCCCEEECC
T ss_conf 999899----65607888899797899999986998981-------------------------------7536757033
Q ss_pred CCCCCCCCCCC--------CEEECCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHH
Q ss_conf 34685545424--------925215269999189998899982752112485789999750----599689999999999
Q 001635 298 RSIGDSIAETI--------GVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAES 365 (1040)
Q Consensus 298 RalGD~~~k~~--------~v~~~P~v~~~~l~~~d~flilaSDGl~d~l~~~ei~~~v~~----~~~~~~~a~~lv~~a 365 (1040)
|||||..+|.. .|+++|++..+++.++|+|||||||||||+++++++++++.. ..+++.+|+.|++.|
T Consensus 202 RalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A 281 (307)
T 2p8e_A 202 RALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTC 281 (307)
T ss_dssp BCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 24458877227666777781752476999981799809999788733178879999999998743799999999999999
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 99998308999994899999068655
Q 001635 366 YRLWLQYETRTDDITVIVVHINGLKN 391 (1040)
Q Consensus 366 ~~~~~~~~~~~DniT~ivv~~~~~~~ 391 (1040)
+. +|+.||||||||++...+.
T Consensus 282 ~~-----~g~~DNiTvivv~~~~~~~ 302 (307)
T 2p8e_A 282 LH-----KGSRDNMSIVLVCFSNEGH 302 (307)
T ss_dssp HH-----TTCCSCEEEEEEEC-----
T ss_pred HH-----CCCCCCEEEEEEECCCCCC
T ss_conf 87-----6997880999998788776
Done!