BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001636
(1040 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T7A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp At Ph 5.2
pdb|3T9A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 7.0
pdb|3T9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 5.2
pdb|3T9C|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And Inositol Hexakisphosphate
(Ip6)
pdb|3T9D|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And 5- (Pp)-Ip5 (5-Ip7)
pdb|3T9E|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp, 5-(Pp)-Ip5 (5-Ip7) And Mgf3
(Transition State Mimic)
pdb|3T9F|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And 1,5- (Pp)2-Ip4 (1,5-Ip8)
pdb|4HN2|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And A Substrate Analog 5pa-Ip5
Length = 330
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/332 (55%), Positives = 242/332 (72%), Gaps = 13/332 (3%)
Query: 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICD 64
++I +G+C M KK K S PM +IL+R+ F V+ F ++VIL +P+E WP+CD
Sbjct: 6 RQIVVGICSMAKKSK------SKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCD 59
Query: 65 CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 124
CLI+F+S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++N
Sbjct: 60 CLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILN 119
Query: 125 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 184
R+ + IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+
Sbjct: 120 RDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKI 179
Query: 185 GNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 244
G+RSS + P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+
Sbjct: 180 GSRSSVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERD 238
Query: 245 PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKY 304
+GKEVRYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KY
Sbjct: 239 SEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKY 298
Query: 305 YDDAACVLRKMFLEAKAPHLSSAIPPILPWKV 336
YDD A +L + + AP +PW +
Sbjct: 299 YDDCAKILGNIVMRELAPQFH------IPWSI 324
>pdb|3T54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Atp And Cadmium
pdb|3T99|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And In The Absence Of Cadmium At Ph
7.0
Length = 334
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/332 (55%), Positives = 242/332 (72%), Gaps = 13/332 (3%)
Query: 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICD 64
++I +G+C M KK K S PM +IL+R+ F V+ F ++VIL +P+E WP+CD
Sbjct: 10 RQIVVGICSMAKKSK------SKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCD 63
Query: 65 CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 124
CLI+F+S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++N
Sbjct: 64 CLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILN 123
Query: 125 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 184
R+ + IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+
Sbjct: 124 RDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKI 183
Query: 185 GNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 244
G+RSS + P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+
Sbjct: 184 GSRSSVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERD 242
Query: 245 PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKY 304
+GKEVRYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KY
Sbjct: 243 SEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKY 302
Query: 305 YDDAACVLRKMFLEAKAPHLSSAIPPILPWKV 336
YDD A +L + + AP +PW +
Sbjct: 303 YDDCAKILGNIVMRELAPQFH------IPWSI 328
>pdb|2O3I|A Chain A, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68.
pdb|2O3I|B Chain B, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68
Length = 405
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 493 QFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSS-DEGRVQMSAAA--FAKGLL 549
QF Q G +A W S ++ G L + T LK+ + +G+V+ + A F + L
Sbjct: 199 QFGQFGG---LAXWXXSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAXLDFLRREL 255
Query: 550 DLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKM 597
D++G+L +L S + S G D + +E+ + R + ++ S +
Sbjct: 256 DIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLL 303
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 147 NRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIY 206
N W F+E P HG+ S++I P+ + + + + ++ + + V + I
Sbjct: 216 NDLWYNFIELPYHGESISMLIALPTESSTPLSAIIPHISTKTIDSWMSI-MVPKRVQVIL 274
Query: 207 EEFMPTGGTDVK 218
+F TD+K
Sbjct: 275 PKFTAVAQTDLK 286
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 103 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 162
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 163 A-----AKKLINDYVKNGTR 177
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 93 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 152
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 153 A-----AKKLINDYVKNGTR 167
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 92 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 151
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 152 A-----AKKLINDYVKNGTR 166
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 519 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 576
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 577 SIEMEEAKARLNEIIKSGSK 596
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,809,455
Number of Sequences: 62578
Number of extensions: 1310432
Number of successful extensions: 2970
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2964
Number of HSP's gapped (non-prelim): 15
length of query: 1040
length of database: 14,973,337
effective HSP length: 109
effective length of query: 931
effective length of database: 8,152,335
effective search space: 7589823885
effective search space used: 7589823885
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)