Query 001636
Match_columns 1040
No_of_seqs 234 out of 409
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 3E-296 7E-301 2483.0 60.3 962 5-1040 39-1017(1018)
2 COG0189 RimK Glutathione synth 99.9 6.1E-28 1.3E-32 265.5 12.2 239 26-294 42-287 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 1.6E-26 3.5E-31 235.2 5.9 172 100-301 1-174 (190)
4 PRK10446 ribosomal protein S6 99.9 2.1E-23 4.6E-28 225.5 14.7 233 30-294 16-263 (300)
5 TIGR00768 rimK_fam alpha-L-glu 99.9 1.6E-21 3.4E-26 204.5 14.1 238 28-295 12-255 (277)
6 PRK05246 glutathione synthetas 99.9 1E-21 2.3E-26 214.7 10.0 197 58-294 75-284 (316)
7 PLN02941 inositol-tetrakisphos 99.8 3.2E-20 7E-25 205.5 18.6 268 5-320 20-324 (328)
8 TIGR01380 glut_syn glutathione 99.8 2.7E-21 5.8E-26 211.7 9.9 197 58-294 74-283 (312)
9 TIGR02144 LysX_arch Lysine bio 99.8 8.1E-20 1.7E-24 193.6 19.0 236 27-294 10-252 (280)
10 PRK12458 glutathione synthetas 99.8 2.5E-20 5.4E-25 206.6 10.2 199 58-294 75-296 (338)
11 PF00328 His_Phos_2: Histidine 99.8 1E-18 2.2E-23 186.3 18.6 151 682-944 197-347 (347)
12 TIGR03103 trio_acet_GNAT GNAT- 99.7 7.7E-17 1.7E-21 189.1 8.3 177 90-297 285-526 (547)
13 TIGR02291 rimK_rel_E_lig alpha 99.7 2E-16 4.4E-21 174.8 11.0 180 90-293 25-267 (317)
14 PRK01372 ddl D-alanine--D-alan 99.6 2.2E-14 4.7E-19 154.5 16.9 245 6-294 4-268 (304)
15 TIGR02068 cya_phycin_syn cyano 99.6 2.4E-15 5.3E-20 184.6 8.7 173 92-294 203-444 (864)
16 PRK14016 cyanophycin synthetas 99.6 3.1E-15 6.7E-20 180.8 8.4 175 90-294 202-445 (727)
17 PRK02471 bifunctional glutamat 99.5 7.4E-14 1.6E-18 169.4 9.0 179 89-294 475-724 (752)
18 TIGR01205 D_ala_D_alaTIGR D-al 99.4 2.5E-12 5.4E-17 139.1 14.5 212 61-299 62-289 (315)
19 PRK14571 D-alanyl-alanine synt 99.4 7.7E-12 1.7E-16 135.6 15.0 232 25-294 17-263 (299)
20 TIGR01435 glu_cys_lig_rel glut 99.3 1.4E-12 2.9E-17 157.5 5.9 175 91-293 464-709 (737)
21 PF02955 GSH-S_ATP: Prokaryoti 99.3 4.1E-12 8.8E-17 130.3 6.7 123 153-296 34-162 (173)
22 PRK14569 D-alanyl-alanine synt 99.3 5E-11 1.1E-15 129.9 14.7 233 25-296 20-268 (296)
23 KOG1057 Arp2/3 complex-interac 99.2 1.2E-12 2.6E-17 154.0 0.9 85 842-950 780-864 (1018)
24 PRK12767 carbamoyl phosphate s 99.2 7.7E-11 1.7E-15 128.0 13.3 194 63-294 70-268 (326)
25 PRK01966 ddl D-alanyl-alanine 99.2 1.1E-10 2.4E-15 129.2 12.6 204 62-293 81-298 (333)
26 PRK06849 hypothetical protein; 99.2 1.1E-10 2.4E-15 131.1 12.5 193 63-293 77-273 (389)
27 PRK14572 D-alanyl-alanine synt 99.2 4.6E-10 1E-14 125.0 15.8 187 78-293 105-312 (347)
28 cd07061 HP_HAP_like Histidine 99.2 3.2E-10 7E-15 118.9 13.7 49 501-553 28-78 (242)
29 TIGR01142 purT phosphoribosylg 99.1 3.2E-10 7E-15 126.1 13.2 211 63-307 63-290 (380)
30 PRK14568 vanB D-alanine--D-lac 99.1 1.8E-09 3.9E-14 120.1 16.8 198 62-293 90-307 (343)
31 PRK14570 D-alanyl-alanine synt 99.1 1.4E-09 3.1E-14 122.6 15.0 203 62-293 87-313 (364)
32 PRK13790 phosphoribosylamine-- 99.0 1.5E-09 3.2E-14 122.6 11.0 195 73-294 36-248 (379)
33 PF05770 Ins134_P3_kin: Inosit 98.9 4.4E-09 9.5E-14 116.6 10.8 263 4-316 5-305 (307)
34 PRK09288 purT phosphoribosylgl 98.9 4.5E-09 9.9E-14 117.6 10.5 197 62-293 75-282 (395)
35 PF13535 ATP-grasp_4: ATP-gras 98.9 1.3E-09 2.9E-14 107.4 5.3 165 99-294 1-177 (184)
36 TIGR01161 purK phosphoribosyla 98.9 7.1E-09 1.5E-13 115.1 10.7 191 63-293 61-262 (352)
37 PRK00885 phosphoribosylamine-- 98.9 7.6E-09 1.7E-13 117.6 10.0 207 63-294 63-286 (420)
38 PRK07206 hypothetical protein; 98.8 8.3E-08 1.8E-12 108.4 14.8 207 63-293 71-285 (416)
39 PRK05294 carB carbamoyl phosph 98.8 1.7E-08 3.7E-13 127.5 9.4 198 62-294 629-839 (1066)
40 PRK02186 argininosuccinate lya 98.7 6.8E-08 1.5E-12 120.0 11.7 202 57-293 65-274 (887)
41 PRK07178 pyruvate carboxylase 98.7 4.7E-08 1E-12 113.5 9.6 203 62-294 73-290 (472)
42 PRK05586 biotin carboxylase; V 98.7 5.2E-08 1.1E-12 112.0 9.5 202 61-294 73-291 (447)
43 PRK06019 phosphoribosylaminoim 98.7 5.5E-08 1.2E-12 109.5 9.2 195 62-294 63-265 (372)
44 PF02655 ATP-grasp_3: ATP-gras 98.7 4.2E-08 9.2E-13 98.5 7.0 146 101-293 2-155 (161)
45 PRK08463 acetyl-CoA carboxylas 98.6 5.2E-08 1.1E-12 113.4 8.1 204 62-294 73-291 (478)
46 TIGR01369 CPSaseII_lrg carbamo 98.6 8.8E-08 1.9E-12 121.0 10.6 199 62-294 629-839 (1050)
47 TIGR00877 purD phosphoribosyla 98.6 9.3E-08 2E-12 108.5 9.7 203 63-293 65-287 (423)
48 PRK08654 pyruvate carboxylase 98.6 4.9E-08 1.1E-12 114.5 7.7 203 62-294 74-290 (499)
49 PRK08462 biotin carboxylase; V 98.6 9.8E-08 2.1E-12 109.4 9.9 200 62-293 76-292 (445)
50 PRK08591 acetyl-CoA carboxylas 98.6 6.2E-08 1.3E-12 110.9 7.1 205 62-294 74-291 (451)
51 PRK06111 acetyl-CoA carboxylas 98.5 3.7E-07 8E-12 104.4 11.5 203 63-294 75-291 (450)
52 PF14397 ATPgrasp_ST: Sugar-tr 98.5 1.5E-07 3.4E-12 103.2 7.9 185 92-295 16-257 (285)
53 PRK06395 phosphoribosylamine-- 98.5 2.2E-07 4.7E-12 107.4 9.0 204 63-293 66-290 (435)
54 TIGR00514 accC acetyl-CoA carb 98.5 3.5E-07 7.5E-12 105.3 9.3 200 62-293 74-290 (449)
55 PLN02257 phosphoribosylamine-- 98.5 7.4E-07 1.6E-11 103.1 11.4 194 73-293 71-287 (434)
56 TIGR01235 pyruv_carbox pyruvat 98.4 2.9E-07 6.2E-12 117.0 7.3 199 62-293 74-290 (1143)
57 PRK12833 acetyl-CoA carboxylas 98.4 5.7E-07 1.2E-11 104.4 8.4 202 62-294 77-294 (467)
58 PRK12815 carB carbamoyl phosph 98.4 3.6E-06 7.7E-11 106.9 16.0 195 62-293 630-836 (1068)
59 PF15632 ATPgrasp_Ter: ATP-gra 98.4 1.8E-06 3.9E-11 97.0 11.8 197 62-293 66-278 (329)
60 PRK14573 bifunctional D-alanyl 98.4 5.3E-06 1.2E-10 102.4 15.9 207 62-293 526-753 (809)
61 PLN02948 phosphoribosylaminoim 98.3 2.1E-06 4.6E-11 102.6 11.6 193 63-293 84-287 (577)
62 PRK06524 biotin carboxylase-li 98.3 2.3E-06 5E-11 100.4 9.9 185 78-293 117-320 (493)
63 PRK05294 carB carbamoyl phosph 98.3 2E-06 4.4E-11 109.1 10.1 197 62-293 82-301 (1066)
64 PRK12999 pyruvate carboxylase; 98.3 1.5E-06 3.3E-11 110.8 8.8 200 62-293 78-294 (1146)
65 PLN02735 carbamoyl-phosphate s 98.2 3.6E-06 7.7E-11 107.2 10.6 200 62-296 98-322 (1102)
66 PF07478 Dala_Dala_lig_C: D-al 98.2 1.5E-06 3.3E-11 91.1 5.9 159 109-296 1-178 (203)
67 PLN02735 carbamoyl-phosphate s 98.2 1.2E-05 2.7E-10 102.4 13.3 197 62-293 649-873 (1102)
68 COG1181 DdlA D-alanine-D-alani 98.1 9E-06 2E-10 91.0 10.4 189 77-293 77-283 (317)
69 COG1821 Predicted ATP-utilizin 98.1 1.2E-05 2.6E-10 87.3 10.3 166 62-293 73-253 (307)
70 PRK13789 phosphoribosylamine-- 98.1 1.1E-05 2.4E-10 93.3 10.4 204 63-294 69-293 (426)
71 TIGR01369 CPSaseII_lrg carbamo 98.1 8.9E-06 1.9E-10 103.3 10.4 196 62-293 81-299 (1050)
72 TIGR02712 urea_carbox urea car 97.9 2.8E-05 6E-10 100.0 9.8 202 62-294 73-290 (1201)
73 PRK12815 carB carbamoyl phosph 97.9 3.7E-05 7.9E-10 98.0 10.4 197 62-293 82-300 (1068)
74 PRK05784 phosphoribosylamine-- 97.9 6.1E-05 1.3E-09 88.8 10.4 202 63-293 70-307 (486)
75 PF02750 Synapsin_C: Synapsin, 97.7 7.8E-05 1.7E-09 78.6 6.9 168 92-297 1-179 (203)
76 PF14398 ATPgrasp_YheCD: YheC/ 97.7 0.0001 2.2E-09 80.4 7.9 187 86-294 7-231 (262)
77 PRK13278 purP 5-formaminoimida 97.3 0.0072 1.6E-07 69.3 17.0 178 85-295 107-311 (358)
78 COG2232 Predicted ATP-dependen 97.2 0.0009 1.9E-08 75.3 8.0 154 89-293 107-271 (389)
79 COG0439 AccC Biotin carboxylas 96.8 0.0022 4.8E-08 75.3 7.4 200 62-293 74-290 (449)
80 PF02786 CPSase_L_D2: Carbamoy 96.7 0.00026 5.5E-09 75.2 -1.3 161 102-294 1-178 (211)
81 PRK13277 5-formaminoimidazole- 96.5 0.029 6.2E-07 64.6 13.2 170 101-303 125-325 (366)
82 COG0458 CarB Carbamoylphosphat 96.1 0.029 6.2E-07 65.1 10.1 198 62-296 70-291 (400)
83 PF01071 GARS_A: Phosphoribosy 94.9 0.014 3E-07 62.0 2.1 164 102-293 2-186 (194)
84 PF14305 ATPgrasp_TupA: TupA-l 92.7 2.4 5.1E-05 46.4 14.1 174 96-292 14-214 (239)
85 PF02222 ATP-grasp: ATP-grasp 91.2 0.73 1.6E-05 48.1 7.9 148 110-292 1-157 (172)
86 KOG3672 Histidine acid phospha 90.8 0.15 3.3E-06 58.9 2.7 59 501-566 178-240 (487)
87 COG0027 PurT Formate-dependent 89.4 1 2.2E-05 51.5 7.5 181 79-292 90-281 (394)
88 COG0026 PurK Phosphoribosylami 89.2 1.6 3.5E-05 50.7 9.1 168 78-287 76-257 (375)
89 KOG3895 Synaptic vesicle prote 88.7 0.22 4.9E-06 57.0 1.9 203 80-324 178-394 (488)
90 PF14243 DUF4343: Domain of un 82.9 9 0.00019 38.4 9.6 81 199-296 33-117 (130)
91 PRK10172 phosphoanhydride phos 74.6 2.2 4.8E-05 50.7 2.9 54 498-553 77-135 (436)
92 COG0151 PurD Phosphoribosylami 72.0 10 0.00022 45.2 7.3 213 33-293 55-286 (428)
93 PF03133 TTL: Tubulin-tyrosine 70.8 1.4 3.1E-05 48.3 0.2 54 152-223 67-126 (292)
94 cd07040 HP Histidine phosphata 69.3 4.3 9.3E-05 39.1 3.1 25 525-549 47-71 (153)
95 KOG3720 Lysosomal & prostatic 68.3 5.1 0.00011 47.2 4.0 52 501-554 80-133 (411)
96 PHA02117 glutathionylspermidin 66.8 11 0.00024 44.5 6.3 65 152-234 309-379 (397)
97 KOG3720 Lysosomal & prostatic 66.1 3.9 8.5E-05 48.1 2.5 33 914-952 317-349 (411)
98 COG3919 Predicted ATP-grasp en 65.8 4.9 0.00011 45.9 3.0 152 104-293 116-285 (415)
99 PRK10172 phosphoanhydride phos 63.7 4.8 0.0001 48.0 2.6 56 865-942 322-379 (436)
100 cd02639 R3H_RRM R3H domain of 53.2 15 0.00033 32.7 3.3 34 241-274 11-44 (60)
101 PRK10507 bifunctional glutathi 51.5 30 0.00064 43.3 6.5 73 152-244 529-607 (619)
102 PF00300 His_Phos_1: Histidine 47.7 15 0.00032 35.5 2.6 21 528-548 50-70 (158)
103 PRK10173 glucose-1-phosphatase 45.6 14 0.00031 43.7 2.6 55 498-553 75-133 (413)
104 TIGR03162 ribazole_cobC alpha- 40.7 19 0.00042 36.3 2.3 21 528-548 46-66 (177)
105 cd07067 HP_PGM_like Histidine 40.1 21 0.00045 34.9 2.4 21 528-548 50-70 (153)
106 PF08442 ATP-grasp_2: ATP-gras 37.2 9.8 0.00021 40.9 -0.4 42 105-159 6-48 (202)
107 TIGR01016 sucCoAbeta succinyl- 34.6 20 0.00043 41.5 1.5 42 104-158 6-48 (386)
108 PRK03482 phosphoglycerate muta 33.4 31 0.00067 36.3 2.6 20 528-547 50-69 (215)
109 PRK13463 phosphatase PhoE; Pro 32.7 31 0.00068 36.3 2.4 20 528-547 51-70 (203)
110 PRK10173 glucose-1-phosphatase 32.1 35 0.00076 40.5 3.0 46 865-927 304-350 (413)
111 COG0406 phoE Broad specificity 30.6 35 0.00076 35.5 2.4 23 527-549 52-74 (208)
112 smart00855 PGAM Phosphoglycera 29.8 39 0.00085 33.4 2.5 21 528-548 51-71 (155)
113 PTZ00123 phosphoglycerate muta 28.1 42 0.0009 36.5 2.5 21 528-548 39-59 (236)
114 PRK15004 alpha-ribazole phosph 27.6 41 0.00089 35.1 2.3 20 528-547 49-68 (199)
115 TIGR03848 MSMEG_4193 probable 27.2 43 0.00094 35.0 2.4 21 528-548 49-69 (204)
116 PRK00696 sucC succinyl-CoA syn 27.0 23 0.00049 41.1 0.3 42 104-158 6-48 (388)
117 TIGR00249 sixA phosphohistidin 26.4 50 0.0011 33.5 2.6 21 528-548 47-67 (152)
118 COG1038 PycA Pyruvate carboxyl 24.8 1.5E+02 0.0033 38.5 6.6 181 88-299 107-302 (1149)
119 TIGR00640 acid_CoA_mut_C methy 24.6 48 0.001 33.4 2.0 72 6-85 54-125 (132)
120 PRK14046 malate--CoA ligase su 24.2 35 0.00075 40.2 1.1 42 105-159 7-49 (392)
121 PF13549 ATP-grasp_5: ATP-gras 23.2 23 0.00051 38.6 -0.5 97 103-219 12-115 (222)
122 COG1181 DdlA D-alanine-D-alani 22.5 37 0.0008 39.0 0.8 72 150-234 87-160 (317)
123 PLN00124 succinyl-CoA ligase [ 22.4 29 0.00063 41.4 0.0 42 104-158 33-77 (422)
124 PRK01295 phosphoglyceromutase; 22.2 66 0.0014 34.2 2.6 21 528-548 53-73 (206)
125 PRK14115 gpmA phosphoglyceromu 21.7 67 0.0014 35.4 2.6 21 528-548 51-71 (247)
126 KOG0238 3-Methylcrotonyl-CoA c 20.8 87 0.0019 38.6 3.4 183 89-299 98-292 (670)
127 PTZ00122 phosphoglycerate muta 20.7 78 0.0017 36.0 2.9 22 528-549 156-177 (299)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=3.3e-296 Score=2483.02 Aligned_cols=962 Identities=54% Similarity=0.838 Sum_probs=876.4
Q ss_pred CeeEEEEEecccccccCCcccChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH
Q 001636 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 84 (1040)
Q Consensus 5 ~~i~iGVCAM~~Ka~~~~~~~SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~ 84 (1040)
++|+||||||++|+ +||||++||+||+.+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++
T Consensus 39 r~i~vGICaM~kK~------~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~k 112 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKS------KSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAK 112 (1018)
T ss_pred cceEEEEeechhhh------ccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHH
Confidence 67899999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001636 85 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 164 (1040)
Q Consensus 85 lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHn 164 (1040)
||+||+||||.||+++||||.||+||++.|||+|++.+++|++|+++++++++++|+|+|||++|.||||||||+|||||
T Consensus 113 LRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHN 192 (1018)
T KOG1057|consen 113 LRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHN 192 (1018)
T ss_pred hcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeec
Q 001636 165 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 244 (1040)
Q Consensus 165 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN 244 (1040)
||||||+|+|||+++|||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|||||+|||||+||+|+||
T Consensus 193 IYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rn 271 (1018)
T KOG1057|consen 193 IYIYYPSSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERN 271 (1018)
T ss_pred EEEEecCCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeec
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeCCHHHHHHHHHHHHHhcCeeeeEeeeeeCCCeEEEeecCceecccchhhHHHHHHHHHHHHHHhhCCCC
Q 001636 245 PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHL 324 (1040)
Q Consensus 245 ~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n~kYYDdcA~IL~~~~l~~~~p~~ 324 (1040)
+||||+||||.||++||+||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++||+.+.+++.
T Consensus 272 s~GKEvRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~ 351 (1018)
T KOG1057|consen 272 SDGKEVRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAP 351 (1018)
T ss_pred CCCceeeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCcccEEEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCccc
Q 001636 325 SSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAE 404 (1040)
Q Consensus 325 ~~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHgDRTPKQK~K~~~~~~~fi~L~~~~~~~~~~~e 404 (1040)
.+.+|+++||..+++ .+++.++ ++++++|||||||||||||||||||||++|++++||+||++|+|++ ++|
T Consensus 352 ~~~iP~~~p~~~~~~---~~~~v~~-----~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e 422 (1018)
T KOG1057|consen 352 ASQIPWSLPGIRNEK---VEPWVPT-----SSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEE 422 (1018)
T ss_pred cccCCCCCcccccCC---CCCceec-----CCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccc
Confidence 888998899877655 2344443 5679999999999999999999999999999999999999999876 789
Q ss_pred eeeccHHhHHHHHHHHHhhcccCCCCCCCCCcchhhhhhhhHHHHHHHHhcCCCCCCccc-cccchhhhhhccccccccc
Q 001636 405 TKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVS 483 (1040)
Q Consensus 405 ~kLk~~~qLq~vld~~r~~l~~~~~g~~~~~~~e~~e~~~Kl~ql~~vLe~~g~fsGinr-vQlKp~~~~~~~~~~~~~~ 483 (1040)
+|||+|.|||+|||++|.++++.+ ++++++.|...||+||++||||||||||||| |||||+.| +..++++++.
T Consensus 423 ~klk~~~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~-~~~k~se~e~ 496 (1018)
T KOG1057|consen 423 TKLKSANQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKW-VYVKKSEGEL 496 (1018)
T ss_pred eeeCCHHHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccc-cCCCCCcccc
Confidence 999999999999999999998854 2234445668899999999999999999999 99999999 5566666666
Q ss_pred CCcceeEEEEeccCcch---------hhHHHhhc--c-CCCCcchhhhhhcccccceEeecCcchHHHHHHHHHhhhccc
Q 001636 484 GQFIDFLIEQFYQDNGV---------NEIAYWWG--S-HSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDL 551 (1040)
Q Consensus 484 ~~~~~~lLIlKW~~GGE---------e~LG~~fR--Y-p~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~l 551 (1040)
++.++++||+|| ||| |+|||+|| | +|+|+|||||||||||||||||||||||||||||||||||+|
T Consensus 497 ~r~~~llliLKw--GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~l 574 (1018)
T KOG1057|consen 497 EREPQLLLILKW--GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLAL 574 (1018)
T ss_pred ccCcceeEEeee--CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhh
Confidence 776789999999 999 99999999 5 578999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeEecCCCCcCCCccchHHHHHHHHHHHHHHhcCCCccCCCCCCCCcCcccCCCCCCChHHHHHHHHHHHH
Q 001636 552 EGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTK 631 (1040)
Q Consensus 552 egeLtPilv~~V~Kd~~lLD~~~~a~~~m~~vK~kL~~lL~~~~~~~~~~~~~~~~w~~~~~~~~~~P~~~~~~~~~l~~ 631 (1040)
||+|||||||||+||+.|||++++|+++|++||++||+||+.|.++ .++|+|+.. + |+|++++.+++++|+
T Consensus 575 EgelTpiLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~---~-P~~~~~l~~~ve~vk 645 (1018)
T KOG1057|consen 575 EGELTPILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPEL---M-PNPSEVLTQVVELVK 645 (1018)
T ss_pred ccCCcHHHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhc---C-CcHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 467899975 3 599999999999999
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCChhhhhhccCCccchhhhccCCCCCCCCHHHHHHHHHHHHHHhhccccCcccc
Q 001636 632 KVTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDI 711 (1040)
Q Consensus 632 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~ 711 (1040)
.++..+++.+.. ..++ ..|+++.+|.+|+||+|+|+||++||+|||+|||+. .++|||
T Consensus 646 ~~~k~~~e~~~~-------------~~~~--------~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~Di 703 (1018)
T KOG1057|consen 646 NPVKVCDENFAL-------------IEPL--------DHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDI 703 (1018)
T ss_pred hHHHHHHHhhhc-------------cccc--------cceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCc
Confidence 988888764321 1122 348899999999999999999999999999999975 599999
Q ss_pred CCCCcchhhhhhhhccccccCcccHHHHHHHHHHhcceeccccccCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 001636 712 TQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAISV 791 (1040)
Q Consensus 712 SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~EKl~IG~~i~~pLL~KI~~DL~~~~ee~~~~ 791 (1040)
|||||||||||||+|||++|.++++.|||.+||.|||+|+||||||+++|||+||..+|.|||+||+.||+++++ +..
T Consensus 704 SKIpdiYD~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~ 781 (1018)
T KOG1057|consen 704 SKIPDIYDTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLE--LES 781 (1018)
T ss_pred cccchHHhhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchh--hcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 455
Q ss_pred hhhcccccccccccccc--ccCCCCCCccccccccccCCCCccCCCCCCCCCcccccccccCcccCCCCCCccceeeEEE
Q 001636 792 AELKSSQDQVSKSTKTE--KEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLY 869 (1040)
Q Consensus 792 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~RL~p~ya~V~SP~RhvRTrlY 869 (1040)
++.++..+++. .++.. ..+-...++..+......+-+. ++-...++..++.+||.+.++...++.||++||+|
T Consensus 782 ~et~~~~~p~~-~sp~~~~r~~lY~~sk~~v~sl~~~ryG~----~~~~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rly 856 (1018)
T KOG1057|consen 782 AETKNRLNPVY-LSPRRHVRTRLYFTSKSHVHSLLLRRYGI----SDVEKLNDGLLTSIRLYEQILNDPTSERHFHTRLY 856 (1018)
T ss_pred hhhhcccCccc-cChhHHHHHHHhhhhHhhhhhhhhhhcCC----chhhhhcccchhceeechhhccCCcccccceeEEE
Confidence 66666555532 22221 0110111222222222222121 11122345678999999999999999999999999
Q ss_pred eecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEecCCCC-
Q 001636 870 FTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGAD- 948 (1040)
Q Consensus 870 FTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~LYE~~~~~~~~~~rf~Iei~~SpG~~- 948 (1040)
||+|||||+|+||++||.++.+..|.+++++++|+..++..+|||||+||||||||++.++ .++||+|||++||||+
T Consensus 857 Ftreshi~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~~i~fel~e~t~~S--~~Kr~~~~lt~s~g~~~ 934 (1018)
T KOG1057|consen 857 FTRESHIYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLSQIVFELFENTEAS--GPKRFSIRLTSSRGCDL 934 (1018)
T ss_pred eccchhhhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHHHHHHHHhcccccc--cCcccceEEeecCCccc
Confidence 9999999999999999999998889999999999999999999999999999999999775 4699999999999998
Q ss_pred CCCCCcCCcccCCCCCCccccCC-CCccccccCCcccHHHHHHhhcccCCCCCCCCCCCCCCCcceeeccchhHHHHHhc
Q 001636 949 LSPLEKNDSEASSLHQEHTLPIM-GPERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASVLERLVN 1027 (1040)
Q Consensus 949 ~~pl~~~~~~~~~ld~~H~i~~~-pr~~L~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1040)
.+||| .+|+.+|++||+ |+++|+ .+|+|++|+++++++++|.. +|+..+|.++++++++..++++|+++
T Consensus 935 ~~plD------~~l~~~~~ip~i~P~~~l~---~~Lsl~~v~~~lr~~~~~~~-~P~~~~~~~~~s~~s~~~~~~~r~~~ 1004 (1018)
T KOG1057|consen 935 SCPLD------ENLDARHYIPIIGPLESLT---NHLSLEQVEKKLRDFATPVI-PPPRFTPVNFTSNSSKSAAKLERLVN 1004 (1018)
T ss_pred cCchh------hhhhccCcccccCcHHHHh---hccCHHHHHHHHHhhccccc-CCcccCcccccccchhHHHHHHHHhh
Confidence 45998 789999999999 999999 99999999999999999988 89999999999999999999999999
Q ss_pred cccCCCccCcCCC
Q 001636 1028 LWPFHKNANSNGK 1040 (1040)
Q Consensus 1028 ~~~~~~~~~~~~~ 1040 (1040)
+||+.+++.++|+
T Consensus 1005 ~~~~~~~~~~sg~ 1017 (1018)
T KOG1057|consen 1005 LVPPLKNPASSGK 1017 (1018)
T ss_pred ccCCccCccccCC
Confidence 9999999878875
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.1e-28 Score=265.53 Aligned_cols=239 Identities=23% Similarity=0.277 Sum_probs=195.9
Q ss_pred ChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCcccCCcchhhHHhhHH
Q 001636 26 SAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQHLLHDRR 104 (1040)
Q Consensus 26 SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iNdl~~q~~l~DR~ 104 (1040)
+-+...+..+.....-.+++-+..+.+...+...-..+|++|.+-...+.. ..+++.++.++.++||+..+....+|+.
T Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~i~~~~nK~ 121 (318)
T COG0189 42 SLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSIRRCRNKL 121 (318)
T ss_pred ccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHHHHhhhhHH
Confidence 344444444444333455777778888888888888899999999999888 7888899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh
Q 001636 105 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 184 (1040)
Q Consensus 105 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki 184 (1040)
.+++.|+++|||+|.|+++.++ . +.-..+. +.++.|+|+||++|. .|.|+- +.+.-
T Consensus 122 ~~~~~l~~~~ipvP~T~i~~~~--~-------~~~~~~~---~~~g~pvVlKp~~Gs-----------~G~gV~-~v~~~ 177 (318)
T COG0189 122 YTTQLLAKAGIPVPPTLITRDP--D-------EAAEFVA---EHLGFPVVLKPLDGS-----------GGRGVF-LVEDA 177 (318)
T ss_pred HHHHHHHhcCCCCCCEEEEcCH--H-------HHHHHHH---HhcCCCEEEeeCCCC-----------CccceE-EecCC
Confidence 9999999999999999999883 1 1222222 222359999999998 787873 55544
Q ss_pred C-CCcccccCCccccccc--cceEEeeccCC-CCeeeEEEEECCceEE--EeeccCCCCCCeeeecCCCCceeeeeeCCH
Q 001636 185 G-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVRYPVLLTP 258 (1040)
Q Consensus 185 g-n~sS~~~p~l~~~r~~--gsyIyEEFi~~-~G~DVKvytVG~~~vh--Ae~RKSPvvDG~vrrN~hgke~r~~v~Lt~ 258 (1040)
. +-.+..+ ..... ..+|.||||++ ++.|++|+++|+.+++ |++|..+ .|+||.|.|+|+...++.||+
T Consensus 178 d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~e~~~l~~ 251 (318)
T COG0189 178 DPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRAEPCELTE 251 (318)
T ss_pred ChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccccccCCCH
Confidence 4 3333333 33333 46999999999 7788999999999999 9999885 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeeeeEeeeeeCCCeEEEeecC
Q 001636 259 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 259 ~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 294 (1040)
+++++|.++|+++|+.+||+|++++++|.||||||.
T Consensus 252 e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~ 287 (318)
T COG0189 252 EEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287 (318)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeC
Confidence 999999999999999999999999999999999996
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.93 E-value=1.6e-26 Score=235.19 Aligned_cols=172 Identities=29% Similarity=0.420 Sum_probs=97.8
Q ss_pred HhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHH
Q 001636 100 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 178 (1040)
Q Consensus 100 l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~ 178 (1040)
+.||..++++|+++|||+|.|.+++.. + +....+. ++ .+|+|.||+.|. .|.|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~----~~p~ViKp~~g~-----------~G~gV~ 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG----GFPVVIKPLRGS-----------SGRGVF 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH------SSEEEE-SB------------------E
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc----CCCEEEeeCCCC-----------CCCEEE
Confidence 368999999999999999999999873 1 2333343 32 379999999997 676763
Q ss_pred HHHhhhCCCcccccCCccccccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCC
Q 001636 179 ELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT 257 (1040)
Q Consensus 179 ~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt 257 (1040)
+++......+..+. ....+..+++|+||+. +|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|+
T Consensus 57 -~i~~~~~~~~~l~~---~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~ 130 (190)
T PF08443_consen 57 -LINSPDELESLLDA---FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLP 130 (190)
T ss_dssp -EEESHCHHHHHHH--------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----
T ss_pred -EecCHHHHHHHHHH---HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCC
Confidence 55554444444441 1235788899999999 67999999999999999999997 99999999988888999999
Q ss_pred HHHHHHHHHHHHHhcCeeeeEeeeeeCCCeEEEeecCceecccc
Q 001636 258 PNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 301 (1040)
Q Consensus 258 ~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n 301 (1040)
++++++|.++++++|+++|||||+++++++||||||.+.-.++.
T Consensus 131 ~e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 131 EEIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 99999999999999999999999999999999999987755554
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=225.54 Aligned_cols=233 Identities=21% Similarity=0.286 Sum_probs=174.1
Q ss_pred HHHHHHhhccCCeEEEEeCc-ceeec--CC-------CcccCCcCeeeccccCC--CchHHHHHHHHHcCCcccCCcchh
Q 001636 30 GQILDRLQAFGEFEVIHFGD-KVILE--DP-------IEKWPICDCLIAFYSSG--YPLEKAESYATLRKPFLVNELEPQ 97 (1040)
Q Consensus 30 ~~IL~rL~~~~~feviiF~d-~vIL~--e~-------ve~wP~~D~lIsf~s~g--fpl~kai~y~~lr~p~~iNdl~~q 97 (1040)
+.+++-+.+.| ++++++.- +..++ .. ......+|++|++.... +.-....+.++..+|+++|+..+.
T Consensus 16 ~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~g~~v~n~~~a~ 94 (300)
T PRK10446 16 KRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAI 94 (300)
T ss_pred HHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHCCCceecCHHHH
Confidence 45555555555 66655543 22221 11 12345789999976543 222445778999999999999999
Q ss_pred hHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCCh
Q 001636 98 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGG 176 (1040)
Q Consensus 98 ~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG 176 (1040)
.+.+||..++++|+++|||+|++.++... . +..+.+. .+| .|+|+||++|. .|.|
T Consensus 95 ~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~~----~P~VvKP~~g~-----------~g~G 150 (300)
T PRK10446 95 ARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVGG----APLVVKLVEGT-----------QGIG 150 (300)
T ss_pred HhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhCC----CCEEEEECCCC-----------Cccc
Confidence 99999999999999999999999987542 1 1112221 223 69999999996 5666
Q ss_pred HHHHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeee
Q 001636 177 MKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPV 254 (1040)
Q Consensus 177 ~~~Lfrkign~sS~~~p~l~~~-r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v 254 (1040)
+. +++........++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .|.|+.|.+.|+..++.
T Consensus 151 V~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~~~~~~n~~~g~~~~~~ 223 (300)
T PRK10446 151 VV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--EGDFRSNLHRGGAASVA 223 (300)
T ss_pred EE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--CCchhheeccCCeeccC
Confidence 53 3322211111111 11 23457999999987 79999999999999999999885 68999999988889999
Q ss_pred eCCHHHHHHHHHHHHHhcCeeeeEeeeeeCCCeEEEeecC
Q 001636 255 LLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 255 ~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 294 (1040)
.|+++.+++|.++++++|..++|||++.+.+|+||+|||.
T Consensus 224 ~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~ 263 (300)
T PRK10446 224 SITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNA 263 (300)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEEC
Confidence 9999999999999999999999999999988899999993
No 5
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.86 E-value=1.6e-21 Score=204.48 Aligned_cols=238 Identities=21% Similarity=0.243 Sum_probs=172.0
Q ss_pred hHHHHHHHhhccCCeEEEEeCc---ceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHH
Q 001636 28 PMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 104 (1040)
Q Consensus 28 Pm~~IL~rL~~~~~feviiF~d---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~ 104 (1040)
-++.+.+.+.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+..++|+..+..+.+||+
T Consensus 12 ~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeeeCCHHHHHHHhhHH
Confidence 4555555565555 66666653 2333332234899999999875444444677888889988899999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh
Q 001636 105 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 184 (1040)
Q Consensus 105 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki 184 (1040)
..+++|+++|||+|++..+... . +....+. .++.|+|+||..|. .|.|+. +++..
T Consensus 91 ~~~~~l~~~gi~~P~t~~~~~~--~-------~~~~~~~----~~~~p~vvKP~~g~-----------~g~gv~-~i~~~ 145 (277)
T TIGR00768 91 LTSQLLAKAGLPQPRTGLAGSP--E-------EALKLIE----EIGFPVVLKPVFGS-----------WGRLVS-LARDK 145 (277)
T ss_pred HHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHH----hcCCCEEEEECcCC-----------CCCceE-EEcCH
Confidence 9999999999999999988652 1 1112222 12359999999986 333432 11111
Q ss_pred CCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH
Q 001636 185 GNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 262 (1040)
Q Consensus 185 gn~sS~~~p~l~~~-r~~gsyIyEEFi~~-~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~ 262 (1040)
......+. .+... .....||+||||+. .|.|++|+++|+++++++.|.. .+.++.|.+.++...++.|+++.++
T Consensus 146 ~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~~~~~~~l~~~~~~ 221 (277)
T TIGR00768 146 QAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGGKAEPCPLTEEIEE 221 (277)
T ss_pred HHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCCeeeecCCCHHHHH
Confidence 00000011 00001 11257999999998 5699999999999999998873 5789999998888889999999999
Q ss_pred HHHHHHHHhcCeeeeEeeeeeC-CCeEEEeecCc
Q 001636 263 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGW 295 (1040)
Q Consensus 263 iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNGw 295 (1040)
+|.++++++|..+||||++.+. |++||+|||..
T Consensus 222 ~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~ 255 (277)
T TIGR00768 222 LAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPN 255 (277)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCC
Confidence 9999999999999999999985 48999999963
No 6
>PRK05246 glutathione synthetase; Provisional
Probab=99.85 E-value=1e-21 Score=214.68 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=154.2
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001636 58 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 132 (1040)
Q Consensus 58 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~ 132 (1040)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+.....|++..++++. ++|.|.+.+.. .
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~--- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A--- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H---
Confidence 4578899999886555553 45788999899999999999999999999999766 89999887652 1
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh-CCCcccccCCccccc--cccceEEeec
Q 001636 133 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV-GNRSSEFHPDVRRVR--REGSYIYEEF 209 (1040)
Q Consensus 133 ~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki-gn~sS~~~p~l~~~r--~~gsyIyEEF 209 (1040)
...+.++-.| |+|+||+.|. +|.|+. +.++- .+..+.++ ... ....||.|+|
T Consensus 146 ----~~~~~~~~~~-----~vVlKP~~G~-----------~G~gV~-~i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 ----EIRAFRAEHG-----DIILKPLDGM-----------GGAGIF-RVKADDPNLGSILE----TLTEHGREPVMAQRY 200 (316)
T ss_pred ----HHHHHHHHCC-----CEEEEECCCC-----------CccceE-EEeCCCccHHHHHH----HHHHccCCeEEEEec
Confidence 1223333223 8999999997 565653 22211 11111111 222 2458999999
Q ss_pred cCC-CCeeeEEEEECCceEE-EeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCeeeeEeeeeeC
Q 001636 210 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 284 (1040)
Q Consensus 210 i~~-~G~DVKvytVG~~~vh-Ae~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 284 (1040)
|+. .+.|+||+++|++++| |+.|.++ .|.||.|.|.|+...++.||++|++||.+++ ++.|+..|||||+
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 6789999999999999 9999986 7999999999999999999999999999999 5779999999999
Q ss_pred CCeEEEeecC
Q 001636 285 GRSYVCDVNG 294 (1040)
Q Consensus 285 g~s~V~DVNG 294 (1040)
+.||+|||.
T Consensus 276 -~~~l~EvN~ 284 (316)
T PRK05246 276 -GDYLTEINV 284 (316)
T ss_pred -CCEEEEEeC
Confidence 458999993
No 7
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.84 E-value=3.2e-20 Score=205.49 Aligned_cols=268 Identities=21% Similarity=0.244 Sum_probs=184.6
Q ss_pred CeeEEEEEecccccccCCcccChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH
Q 001636 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 84 (1040)
Q Consensus 5 ~~i~iGVCAM~~Ka~~~~~~~SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~ 84 (1040)
+..+||-|--.||. +|-=-..++..+.+.| ++++--..+- |++.=-.+|++|-...+-.=-....+|..
T Consensus 20 ~~~~vGy~l~~kk~------~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~ 88 (328)
T PLN02941 20 KRFVVGYALTPKKV------KSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYRE 88 (328)
T ss_pred CceEEEEEECHHHH------HHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHH
Confidence 57899988778887 5555555677666665 5554433332 44322247999988754321233445543
Q ss_pred -HcCCcccCCcchhhHHhhHHHHHHHHHhCC-------CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEe
Q 001636 85 -LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 156 (1040)
Q Consensus 85 -lr~p~~iNdl~~q~~l~DR~~vlqiL~~~g-------Ip~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeK 156 (1040)
-.+..+||.+.++..+.||...+++|++.| ||+|+++++...... ........ .++.|+|.|
T Consensus 89 e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~a--------l~~~~~~~--~l~~P~V~K 158 (328)
T PLN02941 89 KHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESS--------IPDAVALA--GLKFPLVAK 158 (328)
T ss_pred HCCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHH--------HHHHHHHh--cCCCCEEEe
Confidence 345789999999999999999999999999 999999999874100 00001122 246799999
Q ss_pred eccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCC
Q 001636 157 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPV 236 (1040)
Q Consensus 157 pv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPv 236 (1040)
|+-|.. ++.|-|+..+|..- + ....+..|+.||||.-+|.|+||||||+.+ +|+.|+|
T Consensus 159 Pl~g~G--------ss~gh~m~lv~~~~----~-------L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v-~~~~R~S-- 216 (328)
T PLN02941 159 PLVADG--------SAKSHKMSLAYDQE----G-------LSKLEPPLVLQEFVNHGGVLFKVYVVGDYV-KCVRRFS-- 216 (328)
T ss_pred ecccCC--------CccccceEEecCHH----H-------HHhcCCcEEEEEecCCCCEEEEEEEECCEE-EEEEecC--
Confidence 999920 12444443222210 0 001344699999999999999999999995 9999998
Q ss_pred CCCeee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhcCeeeeEeeeeeC---CCe
Q 001636 237 VDGVVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRS 287 (1040)
Q Consensus 237 vDG~vr---rN~hgk----------------e~-------r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~---g~s 287 (1040)
.+.++ .|++.| +. ..+...+++=+++|.++++++|+.++||||+|.. ++.
T Consensus 217 -~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~ 295 (328)
T PLN02941 217 -LPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRY 295 (328)
T ss_pred -CcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCce
Confidence 56666 677755 22 3344556678899999999999999999999996 478
Q ss_pred EEEeecCceecccchhhHHHHHHHHHHHHHHhh
Q 001636 288 YVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAK 320 (1040)
Q Consensus 288 ~V~DVNGwSFVK~n~kYYDdcA~IL~~~~l~~~ 320 (1040)
+|+|||++==-|+-..|+. +|-++|++.+
T Consensus 296 ~VidVN~fP~~k~~p~~~~----~l~~~~~~~~ 324 (328)
T PLN02941 296 YVIDINYFPGYAKMPGYET----VLTDFLLSLV 324 (328)
T ss_pred EEEEecCCCccccCCchHH----HHHHHHHHHH
Confidence 9999997765677788884 4444444443
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.84 E-value=2.7e-21 Score=211.68 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=153.0
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001636 58 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 132 (1040)
Q Consensus 58 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~ 132 (1040)
-.|+.+|++|.+-...|.. ...+++++..+..++|+..+.....||...++++. ++|.|++.+...
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~----- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKA----- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHH-----
Confidence 4588999999997665553 46889999999999999999999999988888763 899999876521
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh-hCCCcccccCCccccc--cccceEEeec
Q 001636 133 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK-VGNRSSEFHPDVRRVR--REGSYIYEEF 209 (1040)
Q Consensus 133 ~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk-ign~sS~~~p~l~~~r--~~gsyIyEEF 209 (1040)
+..+.+.-.| |+|+||+.|. .|.|+.+ ++. -.+.++..+ ... ....|++|+|
T Consensus 145 ----~~~~~~~~~g-----~vVvKPl~G~-----------~G~gv~~-v~~~~~~~~~~~~----~~~~~~~~~~~vQ~y 199 (312)
T TIGR01380 145 ----EIRAFLAEHG-----DIVLKPLDGM-----------GGEGIFR-LDPGDPNFNSILE----TMTQRGREPVMAQRY 199 (312)
T ss_pred ----HHHHHHHHcC-----CEEEEECCCC-----------CCceEEE-EcCCCccHHHHHH----HHHhccCCcEEEEec
Confidence 1222332222 8999999997 5666632 221 111111111 111 2357999999
Q ss_pred cCC-CCeeeEEEEECCceE-EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCeeeeEeeeeeC
Q 001636 210 MPT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 284 (1040)
Q Consensus 210 i~~-~G~DVKvytVG~~~v-hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 284 (1040)
|++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...++.||++|+++|.+++ +++|+..||||||
T Consensus 200 I~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii--- 274 (312)
T TIGR01380 200 LPEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI--- 274 (312)
T ss_pred cccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---
Confidence 998 778999999999965 69999985 8999999999899999999999999999998 7789999999999
Q ss_pred CCeEEEeecC
Q 001636 285 GRSYVCDVNG 294 (1040)
Q Consensus 285 g~s~V~DVNG 294 (1040)
++||+|||.
T Consensus 275 -g~~v~EvN~ 283 (312)
T TIGR01380 275 -GGYLTEVNV 283 (312)
T ss_pred -CCEEEEEec
Confidence 479999995
No 9
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.84 E-value=8.1e-20 Score=193.58 Aligned_cols=236 Identities=18% Similarity=0.204 Sum_probs=170.7
Q ss_pred hhHHHHHHHhhccCCeEEE-EeCcc--eeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhH
Q 001636 27 APMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDR 103 (1040)
Q Consensus 27 kPm~~IL~rL~~~~~fevi-iF~d~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR 103 (1040)
...+.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+...-.....++..+..++|+.....+.+||
T Consensus 10 ~~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK 88 (280)
T TIGR02144 10 PDEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDK 88 (280)
T ss_pred HHHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhH
Confidence 34566666777665 3332 33333 34466667999999999874333322344566788898889999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHh
Q 001636 104 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFR 182 (1040)
Q Consensus 104 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfr 182 (1040)
...+++|+++|||+|.+..+... . +..+.+. .++.|+|+||..|. ..+++++.... ....+++
T Consensus 89 ~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~----~~~~P~vvKP~~g~~g~gv~~v~~~~---~l~~~~~ 152 (280)
T TIGR02144 89 IFTYLKLAKAGVPTPRTYLAFDR--E-------AALKLAE----ALGYPVVLKPVIGSWGRLVALIRDKD---ELESLLE 152 (280)
T ss_pred HHHHHHHHHCCcCCCCeEeeCCH--H-------HHHHHHH----HcCCCEEEEECcCCCcCCEEEECCHH---HHHHHHH
Confidence 99999999999999999988642 1 1111111 13469999999985 12222222111 0111111
Q ss_pred hhCCCcccccCCcccc--ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH
Q 001636 183 KVGNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 260 (1040)
Q Consensus 183 kign~sS~~~p~l~~~--r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E 260 (1040)
.. . .. ..+..+|+||||+..|.|++++++|+.++|++.|.+ +.++.|.+.++...++.++++.
T Consensus 153 ~~-------~----~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~ 217 (280)
T TIGR02144 153 HK-------E----VLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEV 217 (280)
T ss_pred HH-------H----hhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHH
Confidence 10 0 01 124579999999977899999999999999999876 6788898877788899999999
Q ss_pred HHHHHHHHHHhcCeeeeEeeeeeC-CCeEEEeecC
Q 001636 261 KQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNG 294 (1040)
Q Consensus 261 k~iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNG 294 (1040)
+++|.++++++|..++|||+++.. |++||+|||.
T Consensus 218 ~~~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~ 252 (280)
T TIGR02144 218 EELAVKAAEAVGGGVVAIDIFESKERGLLVNEVNH 252 (280)
T ss_pred HHHHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeC
Confidence 999999999999999999999984 5899999995
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.82 E-value=2.5e-20 Score=206.60 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=150.7
Q ss_pred cccCCcCeeeccccCCCch--HHHHHH--------HHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccC
Q 001636 58 EKWPICDCLIAFYSSGYPL--EKAESY--------ATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 127 (1040)
Q Consensus 58 e~wP~~D~lIsf~s~gfpl--~kai~y--------~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~ 127 (1040)
-.|..+|+++.+-...|.. ...+.+ ++..+.+++|+........||+..+++++ +++|.|++.+..
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578899999887655544 223333 36778999999999999999998866544 789999987552
Q ss_pred CCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhC--CCcccccCCccccccccce
Q 001636 128 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 204 (1040)
Q Consensus 128 p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkig--n~sS~~~p~l~~~r~~gsy 204 (1040)
. +..+.+. .+| .|+|+||++|. .|.|+. +.+.-. |..+.++ .....+.+
T Consensus 151 -~-------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~-~v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 -E-------YIREFLEESPG----DKMILKPLQGS-----------GGQGVF-LIEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred -H-------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeE-EEecCChhhHHHHHH----HHhhCCCE
Confidence 1 1223332 333 36999999997 555653 222111 1112222 22235689
Q ss_pred EEeeccCC-CCeeeEEEEECCceE------EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---cCe
Q 001636 205 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 274 (1040)
Q Consensus 205 IyEEFi~~-~G~DVKvytVG~~~v------hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~ 274 (1040)
|+||||++ .+-|+||++||++++ ||+.|.++ .|+||.|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999998 778999999999999 99999885 7999999998888899999999999999999988 999
Q ss_pred eeeEeeeeeCCCeEEEeecC
Q 001636 275 VCGFDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 275 VCGfDLLRs~g~s~V~DVNG 294 (1040)
+||+|++ +.+|+|||-
T Consensus 281 ~~gVDli----~~~l~EIN~ 296 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNV 296 (338)
T ss_pred EEeEEEE----CCEEEEEeC
Confidence 9999999 568999994
No 11
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.80 E-value=1e-18 Score=186.33 Aligned_cols=151 Identities=23% Similarity=0.372 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccccCccccCCCCcchhhhhhhhccccccCcccHHHHHHHHHHhcceeccccccCCchh
Q 001636 682 CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQ 761 (1040)
Q Consensus 682 c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~E 761 (1040)
|.|+....+...|..++..+|.. ...+.+++|++|+.+++|++++..+ ..+.++|.. ||.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~- 259 (347)
T PF00328_consen 197 IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLKEYYQY------------YGYSDE- 259 (347)
T ss_dssp STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHHHHHHH------------CSTTHH-
T ss_pred cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHHHHhhc------------ccCCch-
Confidence 56666667889999999999864 2689999999999999999998773 335556655 888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhccccccccccccccccCCCCCCccccccccccCCCCccCCCCCCCCC
Q 001636 762 KLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDD 841 (1040)
Q Consensus 762 Kl~IG~~i~~pLL~KI~~DL~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1040)
++...+.||++.|+..+...-.. .
T Consensus 260 ---~~~~~~~~ll~~ll~~l~~~~~~-----------------------------------~------------------ 283 (347)
T PF00328_consen 260 ---IARLQGGPLLNELLRRLKQAING-----------------------------------N------------------ 283 (347)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCHSS-----------------------------------T------------------
T ss_pred ---HHHHHHhHHHHHHHHHHhhcccc-----------------------------------c------------------
Confidence 45566678888888877753200 0
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001636 842 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 921 (1040)
Q Consensus 842 ~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf 921 (1040)
++.+..|-.+||+..+.|..||.+| |+.....+. .. .--.|-|+|+|
T Consensus 284 -----------------~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~~~~~~-----------~~--~~pp~as~l~f 330 (347)
T PF00328_consen 284 -----------------SPGRPPKLVLYSGHDTTLMPLLSAL---GLDNYSPPY-----------QS--YWPPYASNLVF 330 (347)
T ss_dssp -----------------CSCSSCSEEEEEE-HHHHHHHHHHT---TCTTTSTTT-----------HS--SCSSTT-EEEE
T ss_pred -----------------cccccceEEEEecCHHHHHHHHHHh---CCCccCccc-----------cC--CCCCccceeEE
Confidence 0122367899999999999999999 455432110 01 33468899999
Q ss_pred EEEecCCCCCCCCCeeEEEEEec
Q 001636 922 RMFENTAVALEDPKRFRIELTFS 944 (1040)
Q Consensus 922 ~LYE~~~~~~~~~~rf~Iei~~S 944 (1040)
|||++ +.+.|.||+.+.
T Consensus 331 El~~~------~~~~~~Vr~~yN 347 (347)
T PF00328_consen 331 ELYRD------SGKNYYVRVLYN 347 (347)
T ss_dssp EEEEE------TTTEEEEEEEET
T ss_pred EEEEe------CCCcEEEEEEEC
Confidence 99998 223499999874
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.66 E-value=7.7e-17 Score=189.13 Aligned_cols=177 Identities=24% Similarity=0.378 Sum_probs=133.1
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEe
Q 001636 90 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 169 (1040)
Q Consensus 90 ~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYy 169 (1040)
.+|+..+..+..||..+.++|+++|||+|.+.++... . +..+.+.-.| |+|+||++|.
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~~~G-----~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLAEHG-----AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHHHhC-----CEEEEECCCC--------
Confidence 6678889999999999999999999999999998752 1 1112222123 7999999997
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCccc-cccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC--CCe------
Q 001636 170 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 240 (1040)
Q Consensus 170 p~~~GgG~~~Lfrkign~sS~~~p~l~~-~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvv--DG~------ 240 (1040)
+|.|+. + .+.+... +..-+.. .+....+|.|+|++ |.|+||+|||+++++|+.|..|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 677764 2 1222111 1110111 22345899999995 999999999999999999998742 332
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 001636 241 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 270 (1040)
Q Consensus 241 ------------------------------------------------vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~a 270 (1040)
.+.|+|-|+....| .+.|+.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 15788877777777 7999999999999999
Q ss_pred hcCeeeeEeeeeeC-CCe--EEEeec---Ccee
Q 001636 271 FRQAVCGFDLLRCE-GRS--YVCDVN---GWSF 297 (1040)
Q Consensus 271 fgq~VCGfDLLRs~-g~s--~V~DVN---GwSF 297 (1040)
+|+.||||||+... .+| +||||| |+.-
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~ 526 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGLAN 526 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccccc
Confidence 99999999999874 556 999999 6553
No 13
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.66 E-value=2e-16 Score=174.76 Aligned_cols=180 Identities=17% Similarity=0.131 Sum_probs=131.0
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEE
Q 001636 90 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 168 (1040)
Q Consensus 90 ~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~IY 168 (1040)
..|+=+...++.||..+.++|.++|||+|.|..+....- ..++... +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 357778888999999999999999999999887765310 1122332 333 247999999999
Q ss_pred eccCCCChHHHHHhhhCCCc------cc-----ccCC----cc-ccccc--cceEEeeccCC-C----------CeeeEE
Q 001636 169 YPSSAGGGMKELFRKVGNRS------SE-----FHPD----VR-RVRRE--GSYIYEEFMPT-G----------GTDVKV 219 (1040)
Q Consensus 169 yp~~~GgG~~~Lfrkign~s------S~-----~~p~----l~-~~r~~--gsyIyEEFi~~-~----------G~DVKv 219 (1040)
+|.|+. +.+...+.. .+ ++.. +. ..... ..+.|+||+-. + +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 898884 554332211 01 0000 00 01112 22344466433 2 379999
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 001636 220 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 267 (1040)
Q Consensus 220 ytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt--------------------------------~~Ek~iA~k~ 267 (1040)
+|||++.++||.|.+. -.|.++.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999762 357899999999999999987 5667999999
Q ss_pred HHHhcCeeeeEeeeee-CCCeEEEeec
Q 001636 268 CIAFRQAVCGFDLLRC-EGRSYVCDVN 293 (1040)
Q Consensus 268 ~~afgq~VCGfDLLRs-~g~s~V~DVN 293 (1040)
++++|+.++|+|++.+ +++++|+|||
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN 267 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELN 267 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeC
Confidence 9999999999999986 7899999999
No 14
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.59 E-value=2.2e-14 Score=154.55 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=162.4
Q ss_pred eeEEEEEe------cccccccCCcccChhHHHHHHHhhccCCeEEEEeCc-ceeecCCCcccCCcCeeeccccCCCchH-
Q 001636 6 KITIGVCV------MEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE- 77 (1040)
Q Consensus 6 ~i~iGVCA------M~~Ka~~~~~~~SkPm~~IL~rL~~~~~feviiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~- 77 (1040)
+++|+||+ -+... .|. +.|++=|.+.| +++++... +.+++ +-.+..+|+++..+...+..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~------~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~ 72 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSL------NSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDG 72 (304)
T ss_pred CcEEEEEeCCCCCCceEeH------HhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCcc
Confidence 45788888 33322 332 66777776644 66666532 22222 122457899998876545442
Q ss_pred HHHHHHHHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEe
Q 001636 78 KAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 156 (1040)
Q Consensus 78 kai~y~~lr~p~~iN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeK 156 (1040)
.+-..++..+...+| +.....+..||....++|+++|||+|++..+.... +....+. .++.|+|+|
T Consensus 73 ~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~---------~~~~~~~----~~~~P~ivK 139 (304)
T PRK01372 73 TIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE---------DLLAAID----KLGLPLVVK 139 (304)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc---------hHHHHHh----hcCCCEEEe
Confidence 345566777766654 47888999999999999999999999999987721 1111121 234699999
Q ss_pred eccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCC
Q 001636 157 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP 235 (1040)
Q Consensus 157 pv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSP 235 (1040)
|..|. .|.|+. ++.|.....+ -+. .......+|+||||+ |.++.|.++|+.+.++..+..+
T Consensus 140 P~~g~-----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~ 201 (304)
T PRK01372 140 PAREG-----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA 201 (304)
T ss_pred eCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec
Confidence 99985 333432 1111111000 000 011256799999997 8999999999999888877763
Q ss_pred CCCC--eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhcCe-eeeEeeeeeC-CCeEEEeecC
Q 001636 236 VVDG--VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNG 294 (1040)
Q Consensus 236 vvDG--~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs~-g~s~V~DVNG 294 (1040)
.| .++.+.+.++..+ |..+++++ +++|.+++++||.. +|+||++.++ |++||+|||.
T Consensus 202 --~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~ 268 (304)
T PRK01372 202 --GEFYDYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNT 268 (304)
T ss_pred --CCEEeeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecC
Confidence 44 4566776555443 34577654 57899999999985 8999999997 7799999994
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.58 E-value=2.4e-15 Score=184.62 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=126.4
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001636 92 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 171 (1040)
Q Consensus 92 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~ 171 (1040)
++..+-.+.+||..+.++|+++|||+|.+.++.... +..+.+. .++.|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~---------ea~~~~~----~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAE---------DAWEAAQ----DLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEECCCC----------
Confidence 456677899999999999999999999999886621 1222222 12369999999996
Q ss_pred CCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC-----------
Q 001636 172 SAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 239 (1040)
Q Consensus 172 ~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG----------- 239 (1040)
+|.|+. + .+.+... +..-+. .......+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 -~G~GV~-l--~v~s~~e-l~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-I--NILTRDE-IESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-E--EeCCHHH-HHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 455542 2 1111111 000000 112346799999996 89999999999999999999997655
Q ss_pred -------------------------------------------e---e--eecCCCCceeeee--eCCHHHHHHHHHHHH
Q 001636 240 -------------------------------------------V---V--MRNPDGKEVRYPV--LLTPNEKQMAREVCI 269 (1040)
Q Consensus 240 -------------------------------------------~---v--rrN~hgke~r~~v--~Lt~~Ek~iA~k~~~ 269 (1040)
+ + ++|.+-|+...-+ .++|+.+++|.++|+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 1 3 4677777777766 999999999999999
Q ss_pred HhcCeeeeEeeeee-------CCCeEEEeecC
Q 001636 270 AFRQAVCGFDLLRC-------EGRSYVCDVNG 294 (1040)
Q Consensus 270 afgq~VCGfDLLRs-------~g~s~V~DVNG 294 (1040)
++|+.||||||+-. ..+-.|||||+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~ 444 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNA 444 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcC
Confidence 99999999999753 22338999993
No 16
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.57 E-value=3.1e-15 Score=180.82 Aligned_cols=175 Identities=21% Similarity=0.336 Sum_probs=129.8
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEe
Q 001636 90 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 169 (1040)
Q Consensus 90 ~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYy 169 (1040)
+-++..+..++.||..+.++|+++|||+|++..+.... +....+. .++.|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~---------~a~~~a~----~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAE---------DAWEAAE----EIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHH---------HHHHHHH----HcCCCEEEEECCCC--------
Confidence 46777788899999999999999999999999876521 1111221 23479999999997
Q ss_pred ccCCCChHHHH-HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC--CCe------
Q 001636 170 PSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 240 (1040)
Q Consensus 170 p~~~GgG~~~L-frkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvv--DG~------ 240 (1040)
+|.|+. + .+....-...|+. ..+....+|+|+||+ |.|+||++||+++++|..|.+|-+ ||.
T Consensus 261 ---~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 565653 2 1111111111110 112346899999997 999999999999999999999854 222
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 001636 241 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 267 (1040)
Q Consensus 241 -------------------------------------------------vr--rN~hgke~r~~v~--Lt~~Ek~iA~k~ 267 (1040)
+| .|.+.|+....+. ++|+-+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 3788788887885 999999999999
Q ss_pred HHHhcCeeeeEeeeeeC-------CCeEEEeecC
Q 001636 268 CIAFRQAVCGFDLLRCE-------GRSYVCDVNG 294 (1040)
Q Consensus 268 ~~afgq~VCGfDLLRs~-------g~s~V~DVNG 294 (1040)
|+++|+.||||||+... .+..|||||.
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~ 445 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNA 445 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcC
Confidence 99999999999998853 5669999994
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.47 E-value=7.4e-14 Score=169.35 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=125.4
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEE
Q 001636 89 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMI 167 (1040)
Q Consensus 89 ~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~gedHni~I 167 (1040)
...|...+-.+.+||..+.++|+++|||+|++..+... . +..+.+. +.| .|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~--e-------~a~~~~~~~~g----~PvVVKP~~g~------ 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL--E-------EALADYSLFAD----KAIVVKPKSTN------ 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH--H-------HHHHHHHHhcC----CCEEEEECCCC------
Confidence 34555556678889999999999999999999887652 1 1112221 233 69999999998
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee-----
Q 001636 168 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM----- 242 (1040)
Q Consensus 168 Yyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr----- 242 (1040)
.|.|+. +++.+.+.......=-...+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-|.|+=+
T Consensus 536 -----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~e 607 (752)
T PRK02471 536 -----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRE 607 (752)
T ss_pred -----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHH
Confidence 777874 66555444333321000223456799999995 99999999999999999999986655421
Q ss_pred ----ecCC---CCceeee-------------------------------------------------eeCCHHHHHHHHH
Q 001636 243 ----RNPD---GKEVRYP-------------------------------------------------VLLTPNEKQMARE 266 (1040)
Q Consensus 243 ----rN~h---gke~r~~-------------------------------------------------v~Lt~~Ek~iA~k 266 (1040)
.|.+ |.+.+.| -.+.|+=+++|.+
T Consensus 608 Li~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~ 687 (752)
T PRK02471 608 LVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVK 687 (752)
T ss_pred HHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHH
Confidence 1111 1121111 1456677899999
Q ss_pred HHHHhcCeeeeEeeeeeC-------C--CeEEEeecC
Q 001636 267 VCIAFRQAVCGFDLLRCE-------G--RSYVCDVNG 294 (1040)
Q Consensus 267 ~~~afgq~VCGfDLLRs~-------g--~s~V~DVNG 294 (1040)
||+++|+.||||||+-.. . +-.|||||+
T Consensus 688 aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~ 724 (752)
T PRK02471 688 AAKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNF 724 (752)
T ss_pred HHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecC
Confidence 999999999999999653 1 567899994
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.40 E-value=2.5e-12 Score=139.13 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=132.0
Q ss_pred CCcCeeeccccCCCch-HHHHHHHHHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001636 61 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 138 (1040)
Q Consensus 61 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 138 (1040)
..+|++++..-..+.. ..+-+.++..+...+| +..+..+.+||....++|+++|||+|++..+.++. . +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-~-------~~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-A-------SA 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccc-c-------cc
Confidence 3579998854221222 3566788888865555 57899999999999999999999999999987321 0 00
Q ss_pred CCe-E-EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCe
Q 001636 139 EDF-V-EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 139 ~d~-i-~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~ 215 (1040)
.+. + .+ ...+..|+|+||..|. .|.|+. ++.|... +..-+. ..+.+..+|+||||+ |.
T Consensus 134 ~~~~~~~~-~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~e-l~~~~~~~~~~~~~~lvEe~i~--G~ 194 (315)
T TIGR01205 134 DELECEQV-AEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEE-LQAALDEAFEYDEEVLVEQFIK--GR 194 (315)
T ss_pred hhhhHHHH-HHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCCC--CE
Confidence 110 0 00 0123469999999985 233331 1111111 000000 112356799999995 99
Q ss_pred eeEEEEEC-CceEEEeeccCCCC-CCeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhcC-eeeeEeeeeeC-C
Q 001636 216 DVKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-G 285 (1040)
Q Consensus 216 DVKvytVG-~~~vhAe~RKSPvv-DG~vrrN~hgke~r--~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~-g 285 (1040)
++.|.++| +.....+.+-.... --.+..+.+.++.. .|..|+++. +++|.++++++|. .+|+||++... |
T Consensus 195 e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g 274 (315)
T TIGR01205 195 ELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEG 274 (315)
T ss_pred EEEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCC
Confidence 99999999 44333333222100 00123333333333 344678765 7899999999998 69999999885 5
Q ss_pred CeEEEeec-Cceecc
Q 001636 286 RSYVCDVN-GWSFVK 299 (1040)
Q Consensus 286 ~s~V~DVN-GwSFVK 299 (1040)
++||+||| -+.|-.
T Consensus 275 ~~~viEvN~~pg~~~ 289 (315)
T TIGR01205 275 EIYLNEINTIPGMTA 289 (315)
T ss_pred CEEEEEeeCCCCCCC
Confidence 79999999 344433
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.36 E-value=7.7e-12 Score=135.58 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=147.3
Q ss_pred cChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCccc-CCcchhhHHhh
Q 001636 25 FSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHD 102 (1040)
Q Consensus 25 ~SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~D 102 (1040)
.-+--++|++-|.+.| ++++.++..--+-..+...+.+|+++......|-. ..+.+.++..+...+ ++..+..+.+|
T Consensus 17 sl~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~D 95 (299)
T PRK14571 17 SLRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFD 95 (299)
T ss_pred hHHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcC
Confidence 4455567777777654 66665543211111122234679888875433323 356778888885554 66889999999
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHh
Q 001636 103 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 182 (1040)
Q Consensus 103 R~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfr 182 (1040)
|....++|+ +|||+|.+..+.... . ...+..|+|+||.+|. .|.|+.
T Consensus 96 K~~~k~~l~-~~ip~p~~~~~~~~~------------~-----~~~l~~P~vvKP~~g~-----------~s~Gv~---- 142 (299)
T PRK14571 96 KLLTYRFLK-GTVEIPDFVEIKEFM------------K-----TSPLGYPCVVKPRREG-----------SSIGVF---- 142 (299)
T ss_pred HHHHHHHHh-cCCCCCCEEEEechh------------h-----hhhcCCCEEEecCCCC-----------CcCCEE----
Confidence 999999998 589999998885410 0 1124579999999985 334432
Q ss_pred hhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCCCCCe--eeecCCCCcee--eee
Q 001636 183 KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEVR--YPV 254 (1040)
Q Consensus 183 kign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~---~vhAe~RKSPvvDG~--vrrN~hgke~r--~~v 254 (1040)
++.|...... -+. ..+....+|+||||+ |.++.|-++|.. .+.+....-| .++. +..+.++++.. .|.
T Consensus 143 ~v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p~ 218 (299)
T PRK14571 143 ICESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILPA 218 (299)
T ss_pred EECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeCC
Confidence 1111111000 000 112345799999996 899999999753 3555543322 1221 23333444444 355
Q ss_pred eCCHHH----HHHHHHHHHHhcC-eeeeEeeeeeCCCeEEEeecC
Q 001636 255 LLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 255 ~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DVNG 294 (1040)
.|+++. +++|.++++++|. .+|++|+.-.+|++||+|||.
T Consensus 219 ~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~ 263 (299)
T PRK14571 219 PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINT 263 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeC
Confidence 688764 4589999999995 799999988889999999994
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.31 E-value=1.4e-12 Score=157.50 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=119.4
Q ss_pred cCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeeccccCcceEEEe
Q 001636 91 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIYY 169 (1040)
Q Consensus 91 iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~gedHni~IYy 169 (1040)
..+..+-.+..||..+-++|+++|||+|....+.... +....+ .+.| .|+|+||++|.
T Consensus 464 ~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~g----~PVVVKP~~g~-------- 522 (737)
T TIGR01435 464 KDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFEN----KAIVVKPKSTN-------- 522 (737)
T ss_pred CccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhcC----CCEEEeeCCCC--------
Confidence 3445566889999999999999999999998886621 111111 2333 69999999998
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee------
Q 001636 170 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 242 (1040)
Q Consensus 170 p~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr------ 242 (1040)
+|.|+. +++...+ ..++..-+. .++.+..+|+||||+ |+|+||+|+|.++++|..|..|-|-|+=+
T Consensus 523 ---~G~GVs-i~~~~~~-~eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 523 ---YGLGIT-IFKNGFT-LEDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred ---CcCCeE-EecCcCC-HHHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHH
Confidence 666763 4433222 111221111 234466799999996 99999999999999999999886655311
Q ss_pred ---ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHHH
Q 001636 243 ---RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREVC 268 (1040)
Q Consensus 243 ---rN~---hgke~r-----------------------------------------------~~v-~Lt~~Ek~iA~k~~ 268 (1040)
.|. .|.+.+ -.+ .+.|+=+++|.+||
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 111 122222 122 34567789999999
Q ss_pred HHhcCeeeeEeeeeeC---------CCeEEEeec
Q 001636 269 IAFRQAVCGFDLLRCE---------GRSYVCDVN 293 (1040)
Q Consensus 269 ~afgq~VCGfDLLRs~---------g~s~V~DVN 293 (1040)
+|+|+.||||||+-.. .+--|||||
T Consensus 676 ~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN 709 (737)
T TIGR01435 676 TAVGAAICGVDLIIPDETIPDTDKHAIWGVIEAN 709 (737)
T ss_pred HhcCCCEEEEEEEecCCCCCccccccceEEEEEc
Confidence 9999999999999532 123478998
No 21
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.28 E-value=4.1e-12 Score=130.31 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=84.7
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccccc--ccceEEeeccCC-CCeeeEEEEECCceEEE
Q 001636 153 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRR--EGSYIYEEFMPT-GGTDVKVYTVGPEYAHA 229 (1040)
Q Consensus 153 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~--~gsyIyEEFi~~-~G~DVKvytVG~~~vhA 229 (1040)
+|+||+.|- .|.|+-++-+.-.|.+++++ ..-. ...++.|+|+++ ..-|.|++++++.++||
T Consensus 34 ~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e----~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~a 98 (173)
T PF02955_consen 34 IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE----TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHA 98 (173)
T ss_dssp EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SE
T ss_pred EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHH
Confidence 999999997 66677544444444555555 3323 345999999999 55599999999999999
Q ss_pred eeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---cCeeeeEeeeeeCCCeEEEeecCce
Q 001636 230 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQAVCGFDLLRCEGRSYVCDVNGWS 296 (1040)
Q Consensus 230 e~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~VCGfDLLRs~g~s~V~DVNGwS 296 (1040)
..|..+ .|+||.|.+-|+...++.||++|++||.+++..+ |+.-+|+|+| |.|+.|||=.|
T Consensus 99 v~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 99 VRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLREDGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp EEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE----TTEEEEEE-SS
T ss_pred eecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhcCcEEEEEecc----ccceEEEeccC
Confidence 999996 9999999998888899999999999999999887 7889999999 56999999544
No 22
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.27 E-value=5e-11 Score=129.87 Aligned_cols=233 Identities=14% Similarity=0.173 Sum_probs=145.3
Q ss_pred cChhHHHHHHHhhccCCeEEEEeCc--ceeecCCCcccCCcCeeec-cccCCCchHHHHHHHHHcC-CcccCCcchhhHH
Q 001636 25 FSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLIA-FYSSGYPLEKAESYATLRK-PFLVNELEPQHLL 100 (1040)
Q Consensus 25 ~SkPm~~IL~rL~~~~~feviiF~d--~vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l 100 (1040)
.-+-.++|++-|.+- .++++.++- .-++..=.+. .+|+++. ++|..--.-.+...+++.+ ||.-++..+..+.
T Consensus 20 sl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~ 96 (296)
T PRK14569 20 SLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVIT 96 (296)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHH
Confidence 335667888888774 477777642 1112111111 3565444 4443222246777888888 6777889999999
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHH
Q 001636 101 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 180 (1040)
Q Consensus 101 ~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~L 180 (1040)
+||..+.++|+++|||||++.++.... ..+ ..++.|+|+||.+|. .|.|+.
T Consensus 97 ~DK~~~k~~l~~~gIptp~~~~~~~~~------------~~~----~~~~~P~vVKP~~gg-----------ss~Gv~-- 147 (296)
T PRK14569 97 MDKMISKEILMHHRMPTPMAKFLTDKL------------VAE----DEISFPVAVKPSSGG-----------SSIATF-- 147 (296)
T ss_pred HCHHHHHHHHHHCCCCCCCeEEEchhh------------hhH----hhcCCCEEEEeCCCC-----------CCcCeE--
Confidence 999999999999999999998775410 011 234579999999974 333331
Q ss_pred HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeee-cCCCCceee--eeeCC
Q 001636 181 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR-NPDGKEVRY--PVLLT 257 (1040)
Q Consensus 181 frkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrr-N~hgke~r~--~v~Lt 257 (1040)
++.|... +..-+........+|+||||+ |.++.|.++|+....+.....+ ++.+.. +.+.+...+ |..++
T Consensus 148 --~v~~~~e-L~~a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~~~k~~~~~~~~~P~~l~ 220 (296)
T PRK14569 148 --KVKSIQE-LKHAYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDYESKYSGKSIYHSPSGLC 220 (296)
T ss_pred --EcCCHHH-HHHHHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCChhhccCCCcEEEeCCCCC
Confidence 1111111 000000111224689999995 8999999999875444444332 222221 122233333 44555
Q ss_pred H----HHHHHHHHHHHHhcC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001636 258 P----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 296 (1040)
Q Consensus 258 ~----~Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 296 (1040)
+ +=+++|.++++++|. .+|+||++-. +|.+||+||| |+.
T Consensus 221 ~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t 268 (296)
T PRK14569 221 EQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMT 268 (296)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 3 345689999999995 6999999876 5779999999 753
No 23
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.25 E-value=1.2e-12 Score=153.99 Aligned_cols=85 Identities=38% Similarity=0.662 Sum_probs=77.1
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001636 842 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 921 (1040)
Q Consensus 842 ~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf 921 (1040)
..+|+.++|+|.| .||.||||||||||+|||+|||+ ++||| + +.+.||||++|+++
T Consensus 780 ~~~et~~~~~p~~---~sp~~~~r~~lY~~sk~~v~sl~-~~ryG-~-------------------~~~~~ln~~~~t~~ 835 (1018)
T KOG1057|consen 780 ESAETKNRLNPVY---LSPRRHVRTRLYFTSKSHVHSLL-LRRYG-I-------------------SDVEKLNDGLLTSI 835 (1018)
T ss_pred cchhhhcccCccc---cChhHHHHHHHhhhhHhhhhhhh-hhhcC-C-------------------chhhhhcccchhce
Confidence 3568999999999 49999999999999999999999 99999 2 34689999999999
Q ss_pred EEEecCCCCCCCCCeeEEEEEecCCCCCC
Q 001636 922 RMFENTAVALEDPKRFRIELTFSRGADLS 950 (1040)
Q Consensus 922 ~LYE~~~~~~~~~~rf~Iei~~SpG~~~~ 950 (1040)
||||....++.+.++||+|++|+.-.|.+
T Consensus 836 ~L~~~~~~d~~~e~~~~~rlyFtreshi~ 864 (1018)
T KOG1057|consen 836 RLYEQILNDPTSERHFHTRLYFTRESHIY 864 (1018)
T ss_pred eechhhccCCcccccceeEEEeccchhhh
Confidence 99999999999999999999999877643
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.22 E-value=7.7e-11 Score=128.04 Aligned_cols=194 Identities=20% Similarity=0.242 Sum_probs=126.9
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 63 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
+|++|+.+....++ .+.-..++..+ +++.|+.+...+++||....++|+++|||+|++..+.... +...
T Consensus 70 id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---------~~~~ 140 (326)
T PRK12767 70 IDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLE---------DFKA 140 (326)
T ss_pred CCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHH---------HHHh
Confidence 57788765433333 23333444445 4678999999999999999999999999999998775521 1111
Q ss_pred eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 220 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvy 220 (1040)
.... ..+..|+|.||.+|. .|.|+. +++ +. .++.. .++....+|.||||.-..-.|-+|
T Consensus 141 ~~~~--~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~~~ 199 (326)
T PRK12767 141 ALAK--GELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVDVL 199 (326)
T ss_pred hhhc--ccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEEEE
Confidence 1111 123579999999986 344442 111 11 11110 122234899999994455666677
Q ss_pred EE-CCceEEEeeccCCCCCCeeeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhcCe-eeeEeeeeeCCCeEEEeecC
Q 001636 221 TV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 221 tV-G~~~vhAe~RKSPvvDG~vrrN~hgke-~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVNG 294 (1040)
+. ++.+++...++.- ...+|. ....+...++=+++|.++++++|.+ +++||+++..|++||+|+|.
T Consensus 200 ~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 200 CDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 76 6677766665531 112222 2223344677789999999999994 99999999999999999995
No 25
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.19 E-value=1.1e-10 Score=129.20 Aligned_cols=204 Identities=18% Similarity=0.242 Sum_probs=128.4
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001636 62 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
.+|++++-..-.+..+ .+..++++.+ ||+=++..+..+.+||..+.++|.++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 6899888754333443 4667888877 5666788999999999999999999999999999887631 000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001636 140 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 140 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVK 218 (1040)
..+..--..+..|+|+||.+|. .+.|+. + +.+. .++..-+. ..+.+..+|+|+||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~-~---v~~~-~el~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS-K---VKNE-EELAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE-E---ECCH-HHHHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0000000123479999999975 233332 1 1111 11110000 123456899999998 89999
Q ss_pred EEEECCc-eEEEeeccCCCCCCeee--ec-CCC-CceeeeeeCCHHH----HHHHHHHHHHhcC-eeeeEeeeee-CCCe
Q 001636 219 VYTVGPE-YAHAEARKSPVVDGVVM--RN-PDG-KEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRS 287 (1040)
Q Consensus 219 vytVG~~-~vhAe~RKSPvvDG~vr--rN-~hg-ke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs-~g~s 287 (1040)
|-++|.+ .+.....--+ -++-+. .. ..| .+...|..|+++. +++|.++++++|. .+|.+|++-. +|.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999852 1111111100 011111 11 122 2344577788754 6889999999997 6899999986 4569
Q ss_pred EEEeec
Q 001636 288 YVCDVN 293 (1040)
Q Consensus 288 ~V~DVN 293 (1040)
||+|||
T Consensus 293 ~vlEiN 298 (333)
T PRK01966 293 YLNEIN 298 (333)
T ss_pred EEEEee
Confidence 999999
No 26
>PRK06849 hypothetical protein; Provisional
Probab=99.19 E-value=1.1e-10 Score=131.05 Aligned_cols=193 Identities=16% Similarity=0.264 Sum_probs=126.6
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001636 63 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 142 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 142 (1040)
+|++||-.+..+.+.++.+.++..-.+..++.+....++||...+++++++|||+|++..++... +..+..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~---------~l~~~~ 147 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPE---------AIRNFM 147 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHH---------HHHHHh
Confidence 58888877655444444444443445668999999999999999999999999999999987621 111111
Q ss_pred -EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001636 143 -EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 221 (1040)
Q Consensus 143 -~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvyt 221 (1040)
+.. +.|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++
T Consensus 148 ~~~~----~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~ 205 (389)
T PRK06849 148 FKTP----HTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIV 205 (389)
T ss_pred hcCC----CCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEE
Confidence 111 379999999986 3444421 1111 1111 00 1123456999999996555677777
Q ss_pred ECCceEEEeeccCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhcCe-eeeEeeeee-CCCeEEEeec
Q 001636 222 VGPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 293 (1040)
Q Consensus 222 VG~~~vhAe~RKSPvvDG~vrrN~hgk-e~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~V~DVN 293 (1040)
.++++++....+. ... ..|+ .+.+.....++=.++|.++++++|.+ +++||++.. +|..||+|+|
T Consensus 206 ~~G~v~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 206 RSGELRAHSCYKP-----EYC--AGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred ECCEEEEEEEeec-----ccc--CCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 7887665443221 111 1111 22222234566788999999999987 999999998 7889999999
No 27
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.16 E-value=4.6e-10 Score=125.04 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=121.5
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEe
Q 001636 78 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 156 (1040)
Q Consensus 78 kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeK 156 (1040)
.+..++++.+ ||+-++..+..+.+||..+.++|+++|||+|++..+.+..- ....++.+..- ..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~~-~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLKL-ESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHHH-HhcCCCEEEe
Confidence 5778888888 56667889999999999999999999999999998876310 00011111100 1245799999
Q ss_pred ecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECC----ce---EE
Q 001636 157 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 228 (1040)
Q Consensus 157 pv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~----~~---vh 228 (1040)
|.+|. ..+|++..... -....++.. +..+..+|+||||+ |+++.|-++|. +. +-
T Consensus 178 P~~ggsS~GV~~v~~~~---el~~a~~~~-------------~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNAE---QLMTLLALI-------------FESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCHH---HHHHHHHHH-------------HhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 34443332211 111112211 12345789999995 89999999973 21 11
Q ss_pred --EeeccCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhcCe-eeeEeeeeeCCCeEEEeec
Q 001636 229 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 293 (1040)
Q Consensus 229 --Ae~RKSPvvDG~---vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 293 (1040)
.|-+ | .|. ++..-+.++. ..|..|+++ =+++|.++++++|.. ++++|++-+.|++||+|||
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiN 312 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETN 312 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeee
Confidence 1222 1 222 1222222222 346667765 378999999999966 9999999988999999999
No 28
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.16 E-value=3.2e-10 Score=118.88 Aligned_cols=49 Identities=43% Similarity=0.512 Sum_probs=39.4
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCcchHHHHHHHHHhhhcccCC
Q 001636 501 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 553 (1040)
Q Consensus 501 e~LG~~fR--Yp~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~leg 553 (1040)
.++|+.+| |+. ++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 28 ~~~G~~lr~~y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 28 FELGRYFRQRYGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 46888888 753 33334556789999999999999999999999998664
No 29
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.14 E-value=3.2e-10 Score=126.08 Aligned_cols=211 Identities=17% Similarity=0.226 Sum_probs=131.9
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001636 63 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 141 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~ 141 (1040)
+|++++-+.. .+. .+++.++..+.++.++..+..+.+||....++| +++|||+|++..++... +....
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~---------~~~~~ 131 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLD---------ELREA 131 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 7777765443 333 345677888877788999999999999999975 89999999999886621 11111
Q ss_pred EEEcceecCCCEEEeeccccC-cceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001636 142 VEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 220 (1040)
Q Consensus 142 i~v~G~~~~kPfVeKpv~ged-Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvy 220 (1040)
+. .++.|+|+||++|.+ -++++..... .....++..-.. ....++.+|+||||+ .+..+-|.
T Consensus 132 ~~----~~g~P~VvKP~~g~~s~gv~~v~~~~---el~~~~~~~~~~---------~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 132 VE----KIGYPCVVKPVMSSSGKGQSVVRGPE---DIEKAWEYAQEG---------ARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HH----HcCCCEEEEECCCcCCCCeEEECCHH---HHHHHHHHHHhh---------ccCCCCCEEEEEecC-CCEEEEEE
Confidence 21 234699999999851 2222221111 111222221000 001245799999996 35677777
Q ss_pred EE---CCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-eeeeEeeeeeCCCeEEEee
Q 001636 221 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 292 (1040)
Q Consensus 221 tV---G~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DV 292 (1040)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22332222222334677788764 4678899999997 7889999999999999999
Q ss_pred c----C---ceecccchhhHHH
Q 001636 293 N----G---WSFVKNSYKYYDD 307 (1040)
Q Consensus 293 N----G---wSFVK~n~kYYDd 307 (1040)
| | |..+..+..+|+-
T Consensus 269 npR~~~~~~~~~~~~g~~~~~~ 290 (380)
T TIGR01142 269 SPRPHDTGMVTLISQGLSEFAL 290 (380)
T ss_pred ecCCCCCceEEeeecCCCHHHH
Confidence 9 2 4455556666643
No 30
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.10 E-value=1.8e-09 Score=120.09 Aligned_cols=198 Identities=15% Similarity=0.245 Sum_probs=131.9
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001636 62 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
.+|++++-..-++-.+ .+..++++.+ ||.-++..+..+.+||....++|+++|||+|++.++.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877754445553 6788899988 6677899999999999999999999999999999887621
Q ss_pred CeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001636 140 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 140 d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVK 218 (1040)
+ +. -..+..|+|+||.+|. ..+|.+..... .|...+.. ..+-+..+|+||||+ |.++-
T Consensus 158 ~-~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~------eL~~a~~~----------a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-PD--AATLTYPVFVKPARSGSSFGVSKVNSAD------ELDYAIES----------ARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-hh--hhhcCCCEEEEeCCCCCCCCEEEeCCHH------HHHHHHHH----------HHhcCCcEEEECCcC--CEEEE
Confidence 0 11 1235579999999974 22333222111 11111100 112356789999997 88999
Q ss_pred EEEECCc---eEEEeeccCCCCCCeeeec----CC----CCceeeeeeCCHHH----HHHHHHHHHHhcC-eeeeEeeee
Q 001636 219 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD----GKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLR 282 (1040)
Q Consensus 219 vytVG~~---~vhAe~RKSPvvDG~vrrN----~h----gke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLR 282 (1040)
|-++|.. .+....+..+ ..|.++.. .+ ......|..|+++. +++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888753 2222222222 13333311 11 11235677788753 5789999999999 699999987
Q ss_pred e-CCCeEEEeec
Q 001636 283 C-EGRSYVCDVN 293 (1040)
Q Consensus 283 s-~g~s~V~DVN 293 (1040)
. +|.+||+|||
T Consensus 296 ~~~g~~~llEIN 307 (343)
T PRK14568 296 QEDGTVVLNEVN 307 (343)
T ss_pred eCCCCEEEEEee
Confidence 7 5779999999
No 31
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.08 E-value=1.4e-09 Score=122.65 Aligned_cols=203 Identities=13% Similarity=0.179 Sum_probs=128.5
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcCCcccCCc-chhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001636 62 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~iNdl-~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
.+|++++...-.+-.+ .+..++++.+...++.- .+..+.+||..+.++|+++|||||++..+.+... +.+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787776654334443 78899999996666665 6999999999999999999999999887765210 00111
Q ss_pred CeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001636 140 DFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 217 (1040)
Q Consensus 140 d~i~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DV 217 (1040)
+... +. ..++.|+|+||..+- ..+|.+-.... .|-+.+.. .++-+..+|+||||. |.++
T Consensus 161 ~~~~~~~-~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~~----------a~~~~~~vlVEefI~--GrEi 221 (364)
T PRK14570 161 GIKKDIK-EVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIEE----------AFKYDLTVVIEKFIE--AREI 221 (364)
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHHH----------HHhCCCCEEEECCcC--CEEE
Confidence 1111 10 124579999999963 33333322111 11111100 122345689999997 9999
Q ss_pred EEEEECCceEEEeeccCCCC-----CCeee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhcC-eeeeEe
Q 001636 218 KVYTVGPEYAHAEARKSPVV-----DGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFD 279 (1040)
Q Consensus 218 KvytVG~~~vhAe~RKSPvv-----DG~vr-----rN~h-gke~--r~~v~Lt~----~Ek~iA~k~~~afgq-~VCGfD 279 (1040)
.|-++|..... -+|+. ++.|- ...+ |+.. ..|..|++ +-+++|.++++++|. .+|.+|
T Consensus 222 ~v~Vlg~~~~~----v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 222 ECSVIGNEQIK----IFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred EEEEECCCCce----EeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 99999975321 12211 11111 1111 3322 23556765 567789999999999 589999
Q ss_pred eeee--CCCeEEEeec
Q 001636 280 LLRC--EGRSYVCDVN 293 (1040)
Q Consensus 280 LLRs--~g~s~V~DVN 293 (1040)
++=. +|.+||+|||
T Consensus 298 f~l~~~~g~~yvlEiN 313 (364)
T PRK14570 298 FLIEKDTGLIYLNEIN 313 (364)
T ss_pred EEEECCCCcEEEEEee
Confidence 9776 3779999999
No 32
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.00 E-value=1.5e-09 Score=122.65 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=123.6
Q ss_pred CCch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001636 73 GYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 150 (1040)
Q Consensus 73 gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~ 150 (1040)
..|| .....+++..+. +.-.+..+-.+.+||....++|+++|||+|++..+.... +..+.+. .++
T Consensus 36 E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~---------ea~~~~~----~~g 102 (379)
T PRK13790 36 EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKK---------DALTYIE----NCE 102 (379)
T ss_pred cHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHH---------HHHHHHH----hcC
Confidence 3355 456678888884 444666888899999999999999999999998776520 1222232 134
Q ss_pred CCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEE-
Q 001636 151 KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH- 228 (1040)
Q Consensus 151 kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vh- 228 (1040)
.|+|+||..|. -.++.+.....+ ....++.+- ....++.+|+||||.-.--.|-+++-|..++.
T Consensus 103 ~PvVvKp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~ 168 (379)
T PRK13790 103 LPVVVKKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPF 168 (379)
T ss_pred CCEEEEeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEec
Confidence 69999999874 233333322111 111222110 01124579999999766678888887765432
Q ss_pred -EeeccC-CCCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---cCeeee---EeeeeeCCCeEEEeecC
Q 001636 229 -AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 294 (1040)
Q Consensus 229 -Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVNG 294 (1040)
+..++. ...+|...-|+.|-+.-.|+ .++++. ++||.++++++ |...+| +|++-+.+++||+|||.
T Consensus 169 ~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 169 DCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 222222 12466555565443333344 467653 67899999999 545455 59988888999999996
No 33
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.92 E-value=4.4e-09 Score=116.64 Aligned_cols=263 Identities=24% Similarity=0.393 Sum_probs=152.8
Q ss_pred CCeeEEEEEecccccccCCcccChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHH
Q 001636 4 HKKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESY 82 (1040)
Q Consensus 4 ~~~i~iGVCAM~~Ka~~~~~~~SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y 82 (1040)
.+..+||.|--.+|. +|==- .-|--+.+...++++--. ++.|+++==-.||+|-=..+. .. ....+|
T Consensus 5 ~~~~~VGy~l~~kK~------~~~~~-~~~~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~-~~~~~l~~y 72 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQ------KSFIQ-PSFIDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDE-DWVQQLEEY 72 (307)
T ss_dssp GTT-EEEEE--HHHH------HHHCC-CHHCCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHC-HHHHHHHHH
T ss_pred ccceEEEEEECHHHH------HHhhH-HHHHHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCH-HHHHHHHHH
Confidence 467899998888887 22111 122233444556665433 466666554489999777763 33 566677
Q ss_pred HHHcC-CcccCCcchhhHHhhHHHHHHHHHhC-------CCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEE
Q 001636 83 ATLRK-PFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFV 154 (1040)
Q Consensus 83 ~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~-------gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfV 154 (1040)
.+..- ..+|..++++..|.||...|++|++. +|.+|+.+++..+. . +..+.+.-.| +.-|+|
T Consensus 73 ~~~hP~v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~-------~~~~~l~~ag--L~fPlI 142 (307)
T PF05770_consen 73 IKKHPEVVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-E-------SLPELLKEAG--LKFPLI 142 (307)
T ss_dssp HHH-TTSEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH-C-------CHHHHHHCTT--S-SSEE
T ss_pred HHHCCCeEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH-H-------HHHHHHHHCC--CcccEE
Confidence 77632 35788889999999998888888764 78999999998641 1 1112222344 578999
Q ss_pred Eeeccc----cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEe
Q 001636 155 EKPVHG----DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE 230 (1040)
Q Consensus 155 eKpv~g----edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe 230 (1040)
.||+-+ +-|...|-|... |-.. + +...+.||||.-+|.=-||||||..+.. .
T Consensus 143 ~KPlvA~Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v~~-v 198 (307)
T PF05770_consen 143 CKPLVACGSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKVFV-V 198 (307)
T ss_dssp EEESB-SSTSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEEEE-E
T ss_pred eeehhhcCCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEEEE-E
Confidence 999985 568888888643 3321 1 3346999999999999999999977554 6
Q ss_pred eccC-CCC-CCe-------ee----ecCCCCce-------eeeeeCCHHH--HHHHHHHHHHhcCeeeeEeeeeeCC---
Q 001636 231 ARKS-PVV-DGV-------VM----RNPDGKEV-------RYPVLLTPNE--KQMAREVCIAFRQAVCGFDLLRCEG--- 285 (1040)
Q Consensus 231 ~RKS-Pvv-DG~-------vr----rN~hgke~-------r~~v~Lt~~E--k~iA~k~~~afgq~VCGfDLLRs~g--- 285 (1040)
.|+| |=+ .|+ |. ++.+-... ...+.+.+++ +.+|..+-+++|++..|||++|.++
T Consensus 199 ~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~ 278 (307)
T PF05770_consen 199 KRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGG 278 (307)
T ss_dssp EEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-S
T ss_pred ECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCC
Confidence 6666 211 111 11 11110000 0112222222 6799999999999999999999865
Q ss_pred CeEEEeecCceecccchhhHHHHHHHHHHHH
Q 001636 286 RSYVCDVNGWSFVKNSYKYYDDAACVLRKMF 316 (1040)
Q Consensus 286 ~s~V~DVNGwSFVK~n~kYYDdcA~IL~~~~ 316 (1040)
.-||+|||=|==-|+-..|+ .+|.++|
T Consensus 279 ~~~VIDINyFPgY~~vp~f~----~~l~~~~ 305 (307)
T PF05770_consen 279 RYYVIDINYFPGYKKVPDFE----SVLTDFI 305 (307)
T ss_dssp SEEEEEEEES--TTTSCTHH----HHHHHHH
T ss_pred cEEEEEeccCCCccCCCChH----HHHHHHh
Confidence 49999999654446667777 4444444
No 34
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.91 E-value=4.5e-09 Score=117.55 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=121.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHH-hCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~-~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
.+|++|+.... .+. .+++.++..+..+..+..+-.+.+||....++|. ++|||+|++..++... +...
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~---------~l~~ 143 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLE---------ELRA 143 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHH---------HHHH
Confidence 38888886654 333 3355566667666688899999999999999885 7899999999887621 1111
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIyEEFi~~~G~DVK 218 (1040)
.+. .++.|+|+||..|. -.++++..... -....++..-. ..| ....+|+||||+ .|..+-
T Consensus 144 ~~~----~~g~P~VvKP~~g~~s~Gv~~v~~~~---el~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 144 AVE----EIGYPCVVKPVMSSSGKGQSVVRSPE---DIEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHH----hcCCCEEEEeCCCcCCCCeEEECCHH---HHHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 111 23469999999885 12333322211 11222222100 001 236799999996 456677
Q ss_pred EEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcC-eeeeEeeeeeCCCeEEE
Q 001636 219 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 290 (1040)
Q Consensus 219 vytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq-~VCGfDLLRs~g~s~V~ 290 (1040)
|.++.. ...... | . +.++.+.+-.+.-.|..|+++.. ++|.++++++|. -++.+|+.-+++++||+
T Consensus 206 v~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFCA----P-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEec----C-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 766532 222221 1 1 22222211122345777887654 488999999984 46678999888899999
Q ss_pred eec
Q 001636 291 DVN 293 (1040)
Q Consensus 291 DVN 293 (1040)
|+|
T Consensus 280 Ein 282 (395)
T PRK09288 280 EVS 282 (395)
T ss_pred Eec
Confidence 999
No 35
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.90 E-value=1.3e-09 Score=107.44 Aligned_cols=165 Identities=23% Similarity=0.322 Sum_probs=94.3
Q ss_pred HHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCCh
Q 001636 99 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGG 176 (1040)
Q Consensus 99 ~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG 176 (1040)
++.||....+++.+.|||+|++..+.... +..+.+. ++ .|+|+||..|. --+|++.- +.. -
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~~~~-----~p~vvKp~~g~gs~gv~~~~--~~~-~ 63 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAEDLG-----FPFVVKPVDGSGSRGVFIVH--SPE-E 63 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHHHSS-----SSEEEEESS-STTTT-EEES--SHH-H
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHcC-----CCEEEEcCccccCCCEEEeC--CHH-H
Confidence 36789999999999999999999987731 1222222 22 59999999995 11222211 111 1
Q ss_pred HHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCC---Cceeee
Q 001636 177 MKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KEVRYP 253 (1040)
Q Consensus 177 ~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hg---ke~r~~ 253 (1040)
....++.+.+.+. +.+..||.||||+...-.+.+++.+++++.+...+.- .....+. ....+.
T Consensus 64 l~~~~~~~~~~~~---------~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 129 (184)
T PF13535_consen 64 LEAALAEIREDSP---------LGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPTGYS 129 (184)
T ss_dssp HHHHHHHHHHHHS----------HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEEEEE
T ss_pred HHHHHHHHHHhcc---------cCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceeeeee
Confidence 1112222100000 2357899999999655777778888887555544331 1112222 233344
Q ss_pred eeCC----HHHHHHHHHHHHHhcC--eeeeEeeeeeCCC-eEEEeecC
Q 001636 254 VLLT----PNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 294 (1040)
Q Consensus 254 v~Lt----~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~-s~V~DVNG 294 (1040)
...+ ++=++.+.++++++|. -++++|+++..+| .|++|||.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 130 VPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp ES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred cccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 3222 5567788999999997 9999999999877 69999994
No 36
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.88 E-value=7.1e-09 Score=115.11 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=118.2
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001636 63 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 142 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 142 (1040)
||++ ++-....|. .++++++..+..+.++..+..+.+||....++|+++|||+|++..+.... +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE---------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH---------HHHHHH
Confidence 5653 333333343 45677777766677999999999999999999999999999999987621 111222
Q ss_pred EEcceecCCCEEEeecccc--CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001636 143 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 220 (1040)
Q Consensus 143 ~v~G~~~~kPfVeKpv~ge--dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvy 220 (1040)
. .++.|+|+||..|. ..++++..... -....++.. .+..+|.||||+ .|..+-|.
T Consensus 130 ~----~~g~P~vvKp~~~g~~g~Gv~~v~~~~---el~~a~~~~---------------~~~~~lvEe~I~-~~~E~sv~ 186 (352)
T TIGR01161 130 Q----ELGFPVVLKARTGGYDGRGQYRIRNEA---DLPQAAKEL---------------GDRECIVEEFVP-FERELSVI 186 (352)
T ss_pred H----HcCCCEEEEeCCCCCCCCCEEEECCHH---HHHHHHHhc---------------CCCcEEEEecCC-CCeEEEEE
Confidence 1 12369999999862 23333332211 111112111 134799999996 35667666
Q ss_pred EEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCe-eeeEeeeeeCCC-eEEEe
Q 001636 221 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCD 291 (1040)
Q Consensus 221 tVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~D 291 (1040)
++. +++.. -|+..- +.++-.......|..++++ =+++|.+++++||.. ++++|+..+.+| +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 552 22221 132221 1121111112235556643 367899999999985 999999988655 99999
Q ss_pred ec
Q 001636 292 VN 293 (1040)
Q Consensus 292 VN 293 (1040)
||
T Consensus 261 in 262 (352)
T TIGR01161 261 LA 262 (352)
T ss_pred ec
Confidence 99
No 37
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.85 E-value=7.6e-09 Score=117.56 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=123.4
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 63 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
+|++|+ +...|+ ..+...++..+ |+.-++..+-.+.+||....++|+++|||+|++..+... . +...
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~--~-------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA--E-------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHH
Confidence 466664 334455 23445667677 555577788889999999999999999999999887552 1 1222
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
.+. .+..|+|+||..|. -.++++..... -....++..-+.+ .+. +....+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~---el~~~~~~~~~~~-~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLE---EAKAAVDDMLAGN-KFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHH---HHHHHHHHHhhcc-ccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 12369999999875 12333222211 1112222221110 010 134579999999743334444
Q ss_pred EEECCceEE-Eeecc-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc---C---eeeeEeeeeeCC
Q 001636 220 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 285 (1040)
Q Consensus 220 ytVG~~~vh-Ae~RK-SPvvDG~vrrN~hgke~r~~v~-Lt~~Ek-----~iA~k~~~afg---q---~VCGfDLLRs~g 285 (1040)
++-|..+.. ..+|. -...+|...-|+.|-+.-.|.. |+++.. .|+.++.++++ . -++.+|+.-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 544444332 22221 1224666556666666666764 777533 36667777654 3 567899999999
Q ss_pred CeEEEeecC
Q 001636 286 RSYVCDVNG 294 (1040)
Q Consensus 286 ~s~V~DVNG 294 (1040)
|+||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999993
No 38
>PRK07206 hypothetical protein; Provisional
Probab=98.77 E-value=8.3e-08 Score=108.37 Aligned_cols=207 Identities=14% Similarity=0.178 Sum_probs=121.5
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001636 63 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 142 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 142 (1040)
+|++|+..-.+.++ |-+-.+..++...|+...-...+||....+.|.++|||+|++..+.... +..+.+
T Consensus 71 ~d~vi~~~e~~~~~--~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVEL--ADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHH--HHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHHH
Confidence 68999865444443 2222344555557888888899999999999999999999999876521 122222
Q ss_pred EEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001636 143 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 221 (1040)
Q Consensus 143 ~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvyt 221 (1040)
.-.|- +..|+|+||++|. -.+|++..... -.+..++..-+..+.+. ..+..+|+||||+-.--.|-+++
T Consensus 140 ~~~g~-~~~P~VvKP~~g~gs~gv~~v~~~~---el~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENGL-IDRPVVIKPLESAGSDGVFICPAKG---DWKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcCC-CCCCEEEeCCCCCCCCCEEEeCCHH---HHHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 21110 1349999999984 24444443322 12233433321111111 12468999999974334555666
Q ss_pred ECCceEE-Eeec--cCCCCCCeeeecCCCCceeeee--eCCHHHHHHHHHHHHHhcC--eeeeEeeeeeCCCeEEEeec
Q 001636 222 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 293 (1040)
Q Consensus 222 VG~~~vh-Ae~R--KSPvvDG~vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~s~V~DVN 293 (1040)
.+++... +..+ +.+..+|.+.... .. ..|. ...++=.++|.++++++|. -++.+|+..+.+|++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYDY--DE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceecc--cc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6666433 2232 2222233221110 00 0111 1112234568899999998 47889999999999999999
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.75 E-value=1.7e-08 Score=127.47 Aligned_cols=198 Identities=17% Similarity=0.261 Sum_probs=130.0
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
..|.+|+.+|.-.|+ .....++..+ |+.-|+..+..+++||.+..++|+++|||+|++..+.... +..+
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~e---------e~~~ 698 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVE---------EALE 698 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHH---------HHHH
Confidence 368899988877776 4556677777 4556888999999999999999999999999999886520 1112
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCC-CeeeE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 218 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~-G~DVK 218 (1040)
.+. .++.|+|+||..|. ..++++.+... -....++..- ....+..+|.||||+-. .-+|-
T Consensus 699 ~~~----~igyPvvVKP~~~~Gg~Gv~iv~~~e---eL~~~~~~a~-----------~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 699 VAE----EIGYPVLVRPSYVLGGRAMEIVYDEE---ELERYMREAV-----------KVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHH----hcCCCeEEEeCCCCCCCcEEEECCHH---HHHHHHHHHH-----------hhCCCCcEEEEecCCCCEEEEEE
Confidence 222 23469999998874 23333332211 0111111110 01235679999999764 67888
Q ss_pred EEEECCce-EEE-eeccCCCCCCeeeecCCCCceee---eeeCCHHH----HHHHHHHHHHhcC-eeeeEeeeeeCCCeE
Q 001636 219 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSY 288 (1040)
Q Consensus 219 vytVG~~~-vhA-e~RKSPvvDG~vrrN~hgke~r~---~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~ 288 (1040)
++.-|..+ +.+ +.+.. +...|.|+... +..|++++ +++|.++++++|. .++++|++..++++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~-------~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIE-------EAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeee-------eccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 88766532 222 22222 12345454433 35677653 4578888999998 466699999999999
Q ss_pred EEeecC
Q 001636 289 VCDVNG 294 (1040)
Q Consensus 289 V~DVNG 294 (1040)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999994
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.69 E-value=6.8e-08 Score=120.02 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=127.0
Q ss_pred CcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001636 57 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 136 (1040)
Q Consensus 57 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~ 136 (1040)
+..++.+|+++++.-.+ ..-|-+-.+..+.+ -|+.++-.+.+||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~--v~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYF--IEVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhh--HHHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45566788888873322 32343444545533 3778889999999999999999999999999887621
Q ss_pred ccCCeEEEcceecCCCEEEeeccccC-cceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCe
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~ged-Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~ 215 (1040)
+..+.+. .+..|+|+||++|.. .+|++. .+.. -....+..+. . ...+.||.||||+-.--
T Consensus 133 e~~~~~~----~~~~PvVVKP~~g~gS~GV~~v--~~~~-el~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 133 VALDALD----GLTYPVVVKPRMGSGSVGVRLC--ASVA-EAAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred HHHHHHH----hCCCCEEEEeCCCCCCCCeEEE--CCHH-HHHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 1122222 234699999999861 222222 2111 0111122110 0 12678999999985555
Q ss_pred eeEEEEECCc-eEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC--eeeeEeeeeeCCCeE
Q 001636 216 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCEGRSY 288 (1040)
Q Consensus 216 DVKvytVG~~-~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq--~VCGfDLLRs~g~s~ 288 (1040)
.|-+++.++. ++.+..++.......|.-. +.-+|..++++. .+++.++++++|. .++++|+....+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777776443 4555555542111122111 123567777644 4678899999998 568999999999999
Q ss_pred EEeec
Q 001636 289 VCDVN 293 (1040)
Q Consensus 289 V~DVN 293 (1040)
|+|||
T Consensus 270 liEIn 274 (887)
T PRK02186 270 IIEIN 274 (887)
T ss_pred EEEEC
Confidence 99999
No 41
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.68 E-value=4.7e-08 Score=113.47 Aligned_cols=203 Identities=18% Similarity=0.248 Sum_probs=119.8
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 138 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 138 (1040)
.||+++|-| ||-- ..+.+.++..+ ||+-++.....+++||....++|+++|||+|++....-. +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 489999865 3322 23445666666 567788999999999999999999999999876532110 01
Q ss_pred CCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCCe
Q 001636 139 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 139 ~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~---~~r~~gsyIyEEFi~~~G~ 215 (1040)
++....- ..++.|+|+||.+|. -|.|++ +.+....-...|+--.. ..-.+..++.|+||. ++.
T Consensus 141 ~e~~~~~-~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~ 206 (472)
T PRK07178 141 DEALAEA-ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPK 206 (472)
T ss_pred HHHHHHH-HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCe
Confidence 1111100 123479999999986 344442 22211100000000000 000134688999994 455
Q ss_pred eeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCe-eeeEeeeee-CCC
Q 001636 216 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 286 (1040)
Q Consensus 216 DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq~-VCGfDLLRs-~g~ 286 (1040)
.+-|-++| ++++|...|... .-+++..--|..-...|+++.+ ++|.++++++|.. ++.+|++-. +|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 56554444 356666555431 1122222222221226777655 4899999999975 455999985 788
Q ss_pred eEEEeecC
Q 001636 287 SYVCDVNG 294 (1040)
Q Consensus 287 s~V~DVNG 294 (1040)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999993
No 42
>PRK05586 biotin carboxylase; Validated
Probab=98.68 E-value=5.2e-08 Score=112.04 Aligned_cols=202 Identities=18% Similarity=0.266 Sum_probs=119.2
Q ss_pred CCcCeeeccccCCCchH-HHHH-HHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCcccccc
Q 001636 61 PICDCLIAFYSSGYPLE-KAES-YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 135 (1040)
Q Consensus 61 P~~D~lIsf~s~gfpl~-kai~-y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~ 135 (1040)
..||+++|-| ||-.+ ..++ -++..+ ||+..+..+..+++||....++|+++|||+|++.. +..
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5789998865 33221 2333 344455 57889999999999999999999999999998743 222
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001636 136 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 214 (1040)
Q Consensus 136 ~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G 214 (1040)
.+|....- ..++.|+|+||++|. -.++++..... -....|+...+.+- ..-.++.+|.||||. ++
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~~~~-------~~~~~~~vivEe~i~-g~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKSEAK-------AAFGDDSMYIEKFIE-NP 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHHHHH-------HhcCCCeEEEEecCC-CC
Confidence 11111100 123479999999985 23333222111 12222322211000 000146799999996 34
Q ss_pred eeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhcCeeee-Eeeeee-
Q 001636 215 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRC- 283 (1040)
Q Consensus 215 ~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs- 283 (1040)
..+-+.+++ +++++.-.|... ..+++ ++-+.. | ..|+++. +++|.++++++|..-++ +|++-.
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~--~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~ 280 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRN--QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK 280 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC
Confidence 668887776 345555333221 12222 122221 2 2477643 46789999999976554 999987
Q ss_pred CCCeEEEeecC
Q 001636 284 EGRSYVCDVNG 294 (1040)
Q Consensus 284 ~g~s~V~DVNG 294 (1040)
+|.+||||||.
T Consensus 281 ~g~~~~iEvNp 291 (447)
T PRK05586 281 DGNFYFMEMNT 291 (447)
T ss_pred CCCEEEEEEEC
Confidence 45589999993
No 43
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.67 E-value=5.5e-08 Score=109.48 Aligned_cols=195 Identities=19% Similarity=0.262 Sum_probs=118.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 141 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~ 141 (1040)
.||++ +|-....|. .++++++.. ..+.++.++..+.+||...-+.|+++|||+|++..+.... +....
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~---------~l~~~ 130 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAE---------DLEAA 130 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 56764 443344454 566777666 5577999999999999999999999999999999887621 11122
Q ss_pred EEEcceecCCCEEEeeccc--cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 142 VEVHGNRFWKPFVEKPVHG--DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 142 i~v~G~~~~kPfVeKpv~g--edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
+. .++.|+|+||..| ..+++++-.... -....++.. ....+|+||||+- |..+-|
T Consensus 131 ~~----~~g~P~vlKp~~~g~~g~Gv~~v~~~~---el~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 131 LA----DLGLPAVLKTRRGGYDGKGQWVIRSAE---DLEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HH----HcCCcEEEEeCCCCcCCCCeEEECCHH---HHHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 21 1346999999984 334444433221 111222222 1357999999973 455666
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCe-eeeEeeeeeCCC-eEEEeec
Q 001636 220 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 293 (1040)
Q Consensus 220 ytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~DVN 293 (1040)
.+++.. .-+.+--|+.. .+.++-.-.....|..+++ +=+++|.+++++||.. |+++|+..+.+| +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 555321 00011122111 1111100011123445654 3457889999999975 888999998555 9999999
Q ss_pred C
Q 001636 294 G 294 (1040)
Q Consensus 294 G 294 (1040)
-
T Consensus 265 p 265 (372)
T PRK06019 265 P 265 (372)
T ss_pred C
Confidence 3
No 44
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.65 E-value=4.2e-08 Score=98.48 Aligned_cols=146 Identities=25% Similarity=0.351 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHH
Q 001636 101 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 180 (1040)
Q Consensus 101 ~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~L 180 (1040)
.||++.++.|.++|||+|.++...... .. ..|+|+||..|. -|.|+ +.
T Consensus 2 ~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~~-----~~~~viKp~~G~-----------Gg~~i-~~ 49 (161)
T PF02655_consen 2 SDKLKTYKFLKELGIPVPTTLRDSEPE---------------PI-----DGPWVIKPRDGA-----------GGEGI-RI 49 (161)
T ss_dssp TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS-------------------B-
T ss_pred CCHHHHHHHHHccCCCCCCcccccccc---------------cc-----CCcEEEEeCCCC-----------CCCCe-EE
Confidence 589999999999999999554333210 01 369999999997 34344 34
Q ss_pred HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCC-CCCeeeecCCCCceeeeee-
Q 001636 181 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPV-VDGVVMRNPDGKEVRYPVL- 255 (1040)
Q Consensus 181 frkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~---~vhAe~RKSPv-vDG~vrrN~hgke~r~~v~- 255 (1040)
++.- .+... . .....|+||||+ |+-.-+.++... .+-+..|+-=. -++.|+ .+|++ .+..
T Consensus 50 ~~~~----~~~~~----~-~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~-~~~~~ 114 (161)
T PF02655_consen 50 VDSE----DELEE----F-LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGI-VPADT 114 (161)
T ss_dssp -SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEE-ES---
T ss_pred ECCc----hhhcc----c-cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccc-cccCC
Confidence 4322 11111 0 111129999997 555555444322 33444444310 011121 22222 2443
Q ss_pred -CCHHHHHHHHHHHHHh-cC-eeeeEeeeeeCCCeEEEeec
Q 001636 256 -LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 293 (1040)
Q Consensus 256 -Lt~~Ek~iA~k~~~af-gq-~VCGfDLLRs~g~s~V~DVN 293 (1040)
..++=..+|.+++++| |+ -.+|||++...+++||+|||
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 3445567889999999 76 59999999999999999999
No 45
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.64 E-value=5.2e-08 Score=113.41 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=120.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcE-EEEeccCCCcccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRY-ALVNREVPYQELDYFIE 137 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~-~~~~r~~p~~~~~~~~e 137 (1040)
.+|++++.|+ |-. -...+.++..+ +|+-++.+...+++||....++|+++|||+|.. ....... ..+
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~-------~~~ 143 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES-------MEE 143 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCC-------HHH
Confidence 4789998763 321 12445566666 445588999999999999999999999999774 3322110 001
Q ss_pred cCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001636 138 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 216 (1040)
Q Consensus 138 ~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~D 216 (1040)
..+.+. .++.|+|+||.+|. ..+|++-.... .....|+... ++ ....-.++.++.|+||.. +..
T Consensus 144 ~~~~~~----~igyPvvvKP~~ggGg~Gv~iv~~~~---eL~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 144 IKIFAR----KIGYPVILKASGGGGGRGIRVVHKEE---DLENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHH----HhCCCEEEEeCCCCCCCceEEeCCHH---HHHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeE
Confidence 111221 23479999999985 23333322211 1112222110 00 001113567999999974 555
Q ss_pred eEEEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeee-eCCHHHHH----HHHHHHHHhcCeeee-EeeeeeC-CC
Q 001636 217 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEKQ----MAREVCIAFRQAVCG-FDLLRCE-GR 286 (1040)
Q Consensus 217 VKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs~-g~ 286 (1040)
+-+-++|. +++|...|...+ .+++..--+.. |. .|+++.++ +|.++++++|..-+| +|++-.. |+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 66555543 466666554321 12221111221 22 47776664 889999999987666 9999874 78
Q ss_pred eEEEeecC
Q 001636 287 SYVCDVNG 294 (1040)
Q Consensus 287 s~V~DVNG 294 (1040)
+||||||.
T Consensus 284 ~y~iEiN~ 291 (478)
T PRK08463 284 FYFMEMNT 291 (478)
T ss_pred EEEEEEEC
Confidence 99999993
No 46
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.63 E-value=8.8e-08 Score=120.98 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=128.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
.+|.+|+.++.-.++ .+-..++..+ |+.-|+.....+++||.+..++|+++|||+|++..+.... +..+
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~e---------e~~~ 698 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVE---------EAVE 698 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHH---------HHHH
Confidence 478999888765544 2333445555 4456899999999999999999999999999999887621 1222
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC-CCeeeE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 218 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~-~G~DVK 218 (1040)
.+. .++.|+|+||..|. ..++.+.+... -.+..++..- ....++.+|.||||+. .--+|-
T Consensus 699 ~~~----~igyPvIVKP~~~~Gg~gv~iv~~~e---eL~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 699 FAS----EIGYPVLVRPSYVLGGRAMEIVYNEE---ELRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHH----hcCCCEEEEECCCCCCCCeEEECCHH---HHHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 222 12469999999874 23333333211 1111222110 1123567999999974 456788
Q ss_pred EEEECCceEEEe-eccCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC-eeeeEeeeeeCCCeEE
Q 001636 219 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 289 (1040)
Q Consensus 219 vytVG~~~vhAe-~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~----Ek~iA~k~~~afgq-~VCGfDLLRs~g~s~V 289 (1040)
++..|++++... ... ..+.+.|.|... +|. .|+++ =+++|.++++++|. .++.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888887665432 111 112345655543 333 67764 35678999999985 3455899999999999
Q ss_pred EeecC
Q 001636 290 CDVNG 294 (1040)
Q Consensus 290 ~DVNG 294 (1040)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.63 E-value=9.3e-08 Score=108.53 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=117.1
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 63 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
+|++|+.. ..++ ..+.+.++..+ |+.-++..+-.+.+||....++|+++|||+|++..+... . +...
T Consensus 65 id~vi~~~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~--~-------~~~~ 133 (423)
T TIGR00877 65 IDLAVIGP--EAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP--E-------EALS 133 (423)
T ss_pred CCEEEECC--chHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH--H-------HHHH
Confidence 67777643 2344 34667788888 666688889999999999999999999999999888662 1 1112
Q ss_pred eEEEcceecCCC-EEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001636 141 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 141 ~i~v~G~~~~kP-fVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVK 218 (1040)
.+. .++.| +|+||..|. -.++++..... -....+++.-+.+ +. +.+..+|+||||. |..+-
T Consensus 134 ~~~----~~g~P~~VvKp~~~~gg~Gv~~v~~~~---el~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 134 YIQ----EKGAPAIVVKADGLAAGKGVIVAKTNE---EAIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHH----hcCCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 222 13469 999999875 12333322111 1111222221111 10 1245799999997 45554
Q ss_pred EEEE--CCceEE-EeeccC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhc------CeeeeEeeee
Q 001636 219 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 282 (1040)
Q Consensus 219 vytV--G~~~vh-Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~-----Ek~iA~k~~~afg------q~VCGfDLLR 282 (1040)
|-++ |..+.. ..+|.- ...+|..--++.|-+.-.|. .|+++ .++++.++.++++ .-++.+|+..
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 4433 544332 122211 11222221122221222232 35443 2456666777774 3678899999
Q ss_pred eCCCeEEEeec
Q 001636 283 CEGRSYVCDVN 293 (1040)
Q Consensus 283 s~g~s~V~DVN 293 (1040)
+.+++||||+|
T Consensus 277 t~~g~~viEin 287 (423)
T TIGR00877 277 TKEGPKVLEFN 287 (423)
T ss_pred ECCCcEEEEEE
Confidence 98889999999
No 48
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.63 E-value=4.9e-08 Score=114.50 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=122.6
Q ss_pred CcCeeeccccCCCchH--HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001636 62 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 138 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~ 138 (1040)
.+|++++.|| |..+ ...+.++..+ ||+-++.+...++.||....++|+++|||+|+.....-..+ .+.
T Consensus 74 ~~daI~pg~g--flsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~-------~e~ 144 (499)
T PRK08654 74 GADAIHPGYG--FLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDI-------EEA 144 (499)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCH-------HHH
Confidence 3688998763 4332 3455666666 56778899999999999999999999999987654211000 011
Q ss_pred CCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001636 139 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 217 (1040)
Q Consensus 139 ~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DV 217 (1040)
...+. .++.|+|+||..|. ..++.+-.... -....|+...+ +-. ..+ .++.++.|+||. ++..+
T Consensus 145 ~~~a~----~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~~---~a~---~~f-~~~~v~vE~~I~-~~r~i 209 (499)
T PRK08654 145 KEIAE----EIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQS---IAQ---SAF-GDSTVFIEKYLE-KPRHI 209 (499)
T ss_pred HHHHH----HhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHHH---HHH---HhC-CCCeEEEEeCCC-CCcEE
Confidence 11221 23469999999985 12222222111 11122222110 000 011 156789999996 35667
Q ss_pred EEEEECC---ceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhcCeeee-EeeeeeCCCe
Q 001636 218 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRCEGRS 287 (1040)
Q Consensus 218 KvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs~g~s 287 (1040)
-|-++|. +++|.-.|...+ -|| |+|-+-+ | ..|+++- +++|.++++++|..=+| ||++-.+|++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 7766653 466665554321 122 2332211 2 2366643 46789999999988666 9999889999
Q ss_pred EEEeecC
Q 001636 288 YVCDVNG 294 (1040)
Q Consensus 288 ~V~DVNG 294 (1040)
||||||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999993
No 49
>PRK08462 biotin carboxylase; Validated
Probab=98.63 E-value=9.8e-08 Score=109.40 Aligned_cols=200 Identities=18% Similarity=0.260 Sum_probs=116.2
Q ss_pred CcCeeeccccCCC-ch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001636 62 ICDCLIAFYSSGY-PL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 136 (1040)
Q Consensus 62 ~~D~lIsf~s~gf-pl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~~ 136 (1040)
.+|+++|-++ | .. ....+.++..+. |+-++.++..+++||....++|.++|||+|.+.. +... .
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~---------~ 144 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSY---------E 144 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCH---------H
Confidence 4788998774 3 11 233356777774 6789999999999999999999999999988653 2220 0
Q ss_pred ccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCe
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~ 215 (1040)
+..+.+. .++-|+|+||.+|. -.++++-.... .....|+... ++.. ..+ .++.+|.||||.. +.
T Consensus 145 ~~~~~~~----~~g~PvvvKP~~g~gs~Gv~~v~~~~---eL~~~~~~~~---~~~~---~~~-~~~~vlvEe~i~g-~~ 209 (445)
T PRK08462 145 EAKKIAK----EIGYPVILKAAAGGGGRGMRVVEDES---DLENLYLAAE---SEAL---SAF-GDGTMYMEKFINN-PR 209 (445)
T ss_pred HHHHHHH----HcCCCEEEEeCCCCCCCCeEEECCHH---HHHHHHHHHH---HHHH---hcc-CCCcEEEeccCCC-Ce
Confidence 1111221 23469999999986 12222221110 0111121110 0000 011 2567999999954 55
Q ss_pred eeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhcCee-eeEeeeee-C
Q 001636 216 DVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQAV-CGFDLLRC-E 284 (1040)
Q Consensus 216 DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~-r~~v-~Lt~----~Ek~iA~k~~~afgq~V-CGfDLLRs-~ 284 (1040)
.+.|.++|. ++++.-.|...+ .++ |.+-+ ..|. .|++ +=+++|.++++++|..= +-||++-. +
T Consensus 210 e~~v~v~~~~~g~~~~~g~~~~~~----~~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~ 283 (445)
T PRK08462 210 HIEVQILGDKHGNVIHVGERDCSL----QRR--HQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSN 283 (445)
T ss_pred EEEEEEEECCCCCEEEEEeccccc----eec--ccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCC
Confidence 577766643 444442222210 111 11111 1122 4665 33568899999999853 34999877 4
Q ss_pred CCeEEEeec
Q 001636 285 GRSYVCDVN 293 (1040)
Q Consensus 285 g~s~V~DVN 293 (1040)
|++||||||
T Consensus 284 g~~~viEiN 292 (445)
T PRK08462 284 LDFYFMEMN 292 (445)
T ss_pred CCEEEEEEE
Confidence 689999999
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.59 E-value=6.2e-08 Score=110.92 Aligned_cols=205 Identities=14% Similarity=0.151 Sum_probs=115.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccccc
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 138 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~e~ 138 (1040)
.||++|+.++--.--..+.+.++..+ ||+.++.++..+++||....++|+++|||+|.+. .++.. . +.
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~--~-------~~ 144 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDE--E-------EA 144 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH--H-------HH
Confidence 48999997742211123455667767 4677999999999999999999999999998864 33221 0 11
Q ss_pred CCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001636 139 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 217 (1040)
Q Consensus 139 ~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DV 217 (1040)
.+.+. .++-|+|+||++|. -.++++-. +.. -....++.....+ . ....+..+++||||+. +..+
T Consensus 145 ~~~~~----~~g~PvvvKP~~g~gs~Gv~iv~--~~~-el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 145 LAIAK----EIGYPVIIKATAGGGGRGMRVVR--TEA-ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHH----HcCCCEEEEECCCCCCceEEEEC--CHH-HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 11221 23469999999986 12333222 211 1122232210000 0 0001457899999963 4445
Q ss_pred EEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCe-eeeEeeeee-CCCeE
Q 001636 218 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 288 (1040)
Q Consensus 218 KvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~ 288 (1040)
-+-++| +++++.-.|... ..+++..-.+..-+..|++ +=.++|.++++++|.. ++.||++.. +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~----~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCS----LQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEeccccc----ceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 544443 345554222211 0010000000010123554 3346789999999975 344999988 78899
Q ss_pred EEeecC
Q 001636 289 VCDVNG 294 (1040)
Q Consensus 289 V~DVNG 294 (1040)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999994
No 51
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.54 E-value=3.7e-07 Score=104.37 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=114.3
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 63 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
+|++++.++- .+. ..+...++..+ |+.-++..+-.+.+||....++|.++|||+|++.......+ .+..+
T Consensus 75 id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~-------~e~~~ 146 (450)
T PRK06111 75 AEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDA-------EEAIA 146 (450)
T ss_pred CCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCH-------HHHHH
Confidence 4777776421 111 22445666666 45668888899999999999999999999998632111111 01111
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
.+. .++.|+|+||.+|. -+++++..... -....++........+ ..++.+|.||||.- +..+-+
T Consensus 147 ~~~----~~~~P~VvKP~~g~gs~Gv~iv~~~~---el~~a~~~~~~~~~~~-------~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 147 IAR----QIGYPVMLKASAGGGGIGMQLVETEQ---ELTKAFESNKKRAANF-------FGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHH----HhCCCEEEEeCCCCCCceEEEECCHH---HHHHHHHHHHHHHHHh-------cCCCcEEEEcccCC-CcEEEE
Confidence 221 23469999999985 34444444322 1223333321110000 12457999999963 344554
Q ss_pred EEEC---CceEEEeeccCCCCCCeeeecCCCCcee-eee-eCCH----HHHHHHHHHHHHhcC-eeeeEeeeeeCCC-eE
Q 001636 220 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SY 288 (1040)
Q Consensus 220 ytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r-~~v-~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~-s~ 288 (1040)
-+++ ++.++.-.|..++.. . |.+-.. .|. .+++ +=+++|.++++++|. .++.||++...++ +|
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~ 285 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSVQR----R--HQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFY 285 (450)
T ss_pred EEEEcCCCCEEEEEeecccccc----c--ccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEE
Confidence 3333 334443333222110 0 111000 011 1333 335788899999998 5777999988766 99
Q ss_pred EEeecC
Q 001636 289 VCDVNG 294 (1040)
Q Consensus 289 V~DVNG 294 (1040)
|+|||.
T Consensus 286 viEiN~ 291 (450)
T PRK06111 286 FLEMNT 291 (450)
T ss_pred EEEEEC
Confidence 999994
No 52
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.54 E-value=1.5e-07 Score=103.22 Aligned_cols=185 Identities=23% Similarity=0.273 Sum_probs=119.7
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001636 92 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 171 (1040)
Q Consensus 92 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~ 171 (1040)
|+-..-.++.||....+++.+.|||+|..++..... -.......+.++....-...-..+||.||..|.
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888888999999999999999999999955522210 000000011122222111101269999999996
Q ss_pred CCCChHHHHHhhhC------CCcccccCCcccccccc--ceEEeeccCC---------CC-eeeEEEEE----CCceEEE
Q 001636 172 SAGGGMKELFRKVG------NRSSEFHPDVRRVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHA 229 (1040)
Q Consensus 172 ~~GgG~~~Lfrkig------n~sS~~~p~l~~~r~~g--syIyEEFi~~---------~G-~DVKvytV----G~~~vhA 229 (1040)
.|.|+. ++...+ ..++.+. .....+ .||+||||.- .+ -+|||.|+ ++.++.|
T Consensus 85 -~G~Gi~-~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a 158 (285)
T PF14397_consen 85 -GGKGIL-VIDRRDGSEINRDISALYA----GLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMA 158 (285)
T ss_pred -CccCEE-EEEeecCcccccchhHHHH----HHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEE
Confidence 555543 222211 1111111 111222 8999999863 12 68999999 3467899
Q ss_pred eeccCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-cCe
Q 001636 230 EARKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQA 274 (1040)
Q Consensus 230 e~RKSPvvDG~vrrN~hgke~r~~v~Lt----------------------------------~~Ek~iA~k~~~af-gq~ 274 (1040)
+.|-+. .|...-|.|.|++...|.+. ++=.++|.++++.| ++.
T Consensus 159 ~lRlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~ 236 (285)
T PF14397_consen 159 MLRLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLG 236 (285)
T ss_pred EEEeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCC
Confidence 999994 77777788877766555432 23356788888877 579
Q ss_pred eeeEeeeeeCCCeEEEeecCc
Q 001636 275 VCGFDLLRCEGRSYVCDVNGW 295 (1040)
Q Consensus 275 VCGfDLLRs~g~s~V~DVNGw 295 (1040)
+.|+|+.=+..||+++|.|..
T Consensus 237 ~iGWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 237 YIGWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred eEEEEEEEcCCCcEEEEeeCC
Confidence 999999999888999999943
No 53
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.52 E-value=2.2e-07 Score=107.37 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=123.4
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCCcc-cCCcchhhHHhhHHHHHHHHHhCCCCCCcEE-EEeccCCCcccccccccC
Q 001636 63 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~-~~~r~~p~~~~~~~~e~~ 139 (1040)
+|.+|+.. .-||. .....++..+..+ ..+.++-.+.+||....+.|.++|||+|.+. .+.... +..
T Consensus 66 id~Vi~~~--d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~---------e~~ 134 (435)
T PRK06395 66 VDIVFVGP--DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEK---------DAA 134 (435)
T ss_pred CCEEEECC--ChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChH---------HHH
Confidence 68888863 34663 3345566667544 4888899999999999999999999998543 332210 111
Q ss_pred C-eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001636 140 D-FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 140 d-~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVK 218 (1040)
. +..+ ..|+|+||..+. .|.|+.....+..+....++.-......++.+|+||||.-.=-.|=
T Consensus 135 ~~~~~~-----~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 135 RDYITS-----MKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHhh-----CCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEE
Confidence 1 1123 369999999987 6677753321111111111100001123567999999963335566
Q ss_pred EEEECCceEEE-eecc-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhcC------eeeeEeee
Q 001636 219 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 281 (1040)
Q Consensus 219 vytVG~~~vhA-e~RK-SPvvDG~vrrN~hgke~r~-----~v~Lt~~Ek----~iA~k~~~afgq------~VCGfDLL 281 (1040)
+|+-|..+..- .++. =.+.||++-=|+.|=+.-. +-.|++++. .|+.+++++++. -|..+++.
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67766665222 1110 1124666555655444222 123777555 567788899994 45568888
Q ss_pred eeCCCeEEEeec
Q 001636 282 RCEGRSYVCDVN 293 (1040)
Q Consensus 282 Rs~g~s~V~DVN 293 (1040)
-+.+||||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 999999999999
No 54
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.48 E-value=3.5e-07 Score=105.28 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=113.1
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 136 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~ 136 (1040)
.||++++-++ |-- ....+.++..+ ||+.++.++..+++||....++|+++|||+|++. .+... .
T Consensus 74 ~id~I~pg~g--~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~--~------- 142 (449)
T TIGR00514 74 GADAIHPGYG--FLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDE--E------- 142 (449)
T ss_pred CCCEEEeCCC--ccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCH--H-------
Confidence 5899998762 211 11234556666 5678999999999999999999999999998764 22220 0
Q ss_pred ccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCe
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~ 215 (1040)
+..+.+. .++.|+|+||.+|. -.++++ -.+.- -...+++.....+. ....++.+|+||||. ++.
T Consensus 143 e~~~~~~----~ig~PvvvKP~~g~gs~Gv~~--v~~~~-el~~~~~~~~~~~~-------~~~~~~~vlvEe~i~-g~~ 207 (449)
T TIGR00514 143 ENVRIAK----RIGYPVIIKATAGGGGRGMRV--VREPD-ELVKSISMTRAEAK-------AAFGNDGVYIEKYIE-NPR 207 (449)
T ss_pred HHHHHHH----HhCCCEEEEeCCCCCCCccEE--ECCHH-HHHHHHHHHHHHHH-------HhCCCCCEEEEECCC-CCe
Confidence 1111111 23479999999986 122222 11110 11112221100000 001245799999995 345
Q ss_pred eeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhcCe-eeeEeeeee-C
Q 001636 216 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC-E 284 (1040)
Q Consensus 216 DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs-~ 284 (1040)
.+-+-+++ +++++...|-. .+.+. +.+-+.+ +..|+++. +++|.++++++|.. ++.||++-+ +
T Consensus 208 e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~ 281 (449)
T TIGR00514 208 HVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKN 281 (449)
T ss_pred EEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCC
Confidence 55554443 34444432211 11110 1221111 22466643 35688999999975 455999887 6
Q ss_pred CCeEEEeec
Q 001636 285 GRSYVCDVN 293 (1040)
Q Consensus 285 g~s~V~DVN 293 (1040)
|.+||+|||
T Consensus 282 g~~~viEiN 290 (449)
T TIGR00514 282 GEFYFMEMN 290 (449)
T ss_pred CCEEEEEEE
Confidence 789999999
No 55
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.46 E-value=7.4e-07 Score=103.10 Aligned_cols=194 Identities=18% Similarity=0.201 Sum_probs=115.2
Q ss_pred CCch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001636 73 GYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 150 (1040)
Q Consensus 73 gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~ 150 (1040)
-+|+ ..+.++++..+. +.-.+..+-.+.+||...-++|+++|||+|++..+... . +....+. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~--~-------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP--A-------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHHHHH----HcC
Confidence 4566 456778887754 45577788899999999999999999999998877552 1 1222232 123
Q ss_pred CCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCC--cccc-ccccceEEeeccCCCCeeeEEEE--ECCc
Q 001636 151 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPD--VRRV-RREGSYIYEEFMPTGGTDVKVYT--VGPE 225 (1040)
Q Consensus 151 kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~--l~~~-r~~gsyIyEEFi~~~G~DVKvyt--VG~~ 225 (1040)
.|+|+||..+. .|.|+. +.+........+..- -..+ ..+..+|.||||. |..+-|.+ =|..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 69999999774 344442 211111100000000 0011 1245799999997 44555533 2333
Q ss_pred eEEE-ee-ccCCCCCCeeeecCCCCceeeee-eCCHHHHH-HHHHH-------HHHhcCeeee---Eeeeee--CCCeEE
Q 001636 226 YAHA-EA-RKSPVVDGVVMRNPDGKEVRYPV-LLTPNEKQ-MAREV-------CIAFRQAVCG---FDLLRC--EGRSYV 289 (1040)
Q Consensus 226 ~vhA-e~-RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek~-iA~k~-------~~afgq~VCG---fDLLRs--~g~s~V 289 (1040)
+..- +. ....+.||+..-|+.|-+.-.|. .++++..+ ++..+ .++.|....| +|++-+ +|++||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3321 11 23346788888888766554455 37774444 34332 3466666555 566554 567999
Q ss_pred Eeec
Q 001636 290 CDVN 293 (1040)
Q Consensus 290 ~DVN 293 (1040)
+|+|
T Consensus 284 LE~N 287 (434)
T PLN02257 284 LEYN 287 (434)
T ss_pred EEEE
Confidence 9999
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.43 E-value=2.9e-07 Score=116.97 Aligned_cols=199 Identities=20% Similarity=0.214 Sum_probs=119.8
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEE-eccCCCcccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 137 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~-~r~~p~~~~~~~~e 137 (1040)
.+|+++|-|| |-- ....+.++..+ +|+-++.+...+++||....++|.++|||+|..... ..+ ..+
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~--------~ee 143 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET--------MEE 143 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC--------HHH
Confidence 4688888663 321 12334455555 677788999999999999999999999999986532 111 001
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCC
Q 001636 138 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 214 (1040)
Q Consensus 138 ~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~---~~r~~gsyIyEEFi~~~G 214 (1040)
..+... .++.|+|+||..|. -|.|++ ..+....-...|+--.+ ..-.++.+++|+||. ++
T Consensus 144 a~~~ae----~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~ 206 (1143)
T TIGR01235 144 VLDFAA----AIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RP 206 (1143)
T ss_pred HHHHHH----HcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CC
Confidence 112221 23479999999986 334442 22211100000000000 000246789999994 46
Q ss_pred eeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhcCe-eeeEeeeee-
Q 001636 215 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC- 283 (1040)
Q Consensus 215 ~DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgk--e~r~~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs- 283 (1040)
..|.|-++|. +++|...|-.. +.| -|.| |..-...|+++. .++|.++++++|.. ++.||++-.
T Consensus 207 reIeVqVlgD~~G~vv~l~eRdcs-----vqr-r~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~ 280 (1143)
T TIGR01235 207 RHIEVQLLGDKHGNVVHLFERDCS-----VQR-RHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN 280 (1143)
T ss_pred eEEEEEEEEeCCCCEEEEEecccc-----ccc-cCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC
Confidence 7788877765 46777666442 222 1222 222123566643 46789999999954 666999986
Q ss_pred CCCeEEEeec
Q 001636 284 EGRSYVCDVN 293 (1040)
Q Consensus 284 ~g~s~V~DVN 293 (1040)
+|++||+|||
T Consensus 281 dg~~yfIEVN 290 (1143)
T TIGR01235 281 DGKFYFIEVN 290 (1143)
T ss_pred CCcEEEEEee
Confidence 4689999999
No 57
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.40 E-value=5.7e-07 Score=104.44 Aligned_cols=202 Identities=15% Similarity=0.161 Sum_probs=115.2
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 136 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~r~~p~~~~~~~~ 136 (1040)
.+|+++|.|+ |-- -...+.++..+ +|+-++.++..+++||....++|.++|||+|++. .+... .
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~--~------- 145 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASL--D------- 145 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCH--H-------
Confidence 4688988663 321 12234455555 5788899999999999999999999999998775 33221 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 216 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~D 216 (1040)
+..... ..++-|+|+||..|. -+..++.-.+.- .....|+... ++-. ..+ .++.++.|+||+. |..
T Consensus 146 e~~~~~----~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 146 AALEVA----ARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred HHHHHH----HHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 111111 123479999999986 122222222111 1111222110 0000 011 2567899999975 566
Q ss_pred eEEEEECC--ceEEEeeccCCCCCCeeeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhcCe-eeeEeeeee--CC
Q 001636 217 VKVYTVGP--EYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRC--EG 285 (1040)
Q Consensus 217 VKvytVG~--~~vhAe~RKSPvvDG~vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs--~g 285 (1040)
|-|-++|. .++|.-.|..- +.|. +.|-. .-+..|+++ =+++|.++++++|.. ++.||++-. +|
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~-----~~r~-~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g 285 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECS-----LQRR-RQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARG 285 (467)
T ss_pred EEEEEEeCCCcEEEEEEeecc-----cccC-CccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC
Confidence 66666665 34554433221 1110 11111 112246653 345889999999986 345898876 36
Q ss_pred CeEEEeecC
Q 001636 286 RSYVCDVNG 294 (1040)
Q Consensus 286 ~s~V~DVNG 294 (1040)
.+||+|||.
T Consensus 286 ~~~~iEvNp 294 (467)
T PRK12833 286 EFYFIEMNT 294 (467)
T ss_pred CEEEEEEEC
Confidence 799999994
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.40 E-value=3.6e-06 Score=106.94 Aligned_cols=195 Identities=13% Similarity=0.183 Sum_probs=123.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
.+|.+|+-+|...++ ++-.-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+... ++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HH
Confidence 378898877766433 2223344445 456688999999999999999999999999999988662 12
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
....- ..++.|+|+||..|. ..+++|.+... ..+..++.. ...+..+|.||||.-.--+|-+
T Consensus 697 ~~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 11110 123479999999874 23333333221 122222222 1235679999999434455556
Q ss_pred EEECCceEE-E-eeccCCCCCCeeeecCCCCcee---eeeeCCHH----HHHHHHHHHHHhcC-eeeeEeeeeeCCCeEE
Q 001636 220 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 289 (1040)
Q Consensus 220 ytVG~~~vh-A-e~RKSPvvDG~vrrN~hgke~r---~~v~Lt~~----Ek~iA~k~~~afgq-~VCGfDLLRs~g~s~V 289 (1040)
+.=|..+.. + +.+.. +...|.|... .|..|+++ =+++|.++++++|. .++.||++..++++||
T Consensus 760 i~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 655554322 1 21111 1224555432 24567764 34678899999985 4677999999999999
Q ss_pred Eeec
Q 001636 290 CDVN 293 (1040)
Q Consensus 290 ~DVN 293 (1040)
||||
T Consensus 833 iEiN 836 (1068)
T PRK12815 833 LEVN 836 (1068)
T ss_pred EEEe
Confidence 9999
No 59
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.39 E-value=1.8e-06 Score=97.02 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=144.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCccc--CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATLRKPFLV--NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i--Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
.+|+++|.+..-+ |.+-.+-|+..+.-++ =+.++..++.||.+.|+.++++|||+|.+..++.- .+|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4678888777776 7888888888887655 46788999999999999999999999999998762 1122222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccc------------ccccceEEe
Q 001636 140 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 207 (1040)
Q Consensus 140 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~------------r~~gsyIyE 207 (1040)
..+...| +|+.+||..|. -|.|.++|-+....-...+.|+...+ ..--.+|+.
T Consensus 139 ~~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 3344454 69999999998 45565544433333344444443211 135678999
Q ss_pred eccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCe-eeeEeeee-eCC
Q 001636 208 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 285 (1040)
Q Consensus 208 EFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLR-s~g 285 (1040)
||++--=--|=|..-++++++|-.|+=- | .+..+.-.++=-++|.++|++||++ +-+|.+-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K~-----------G--~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRKL-----------G--RRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEec-----------C--ceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 9998844445556666888888877651 2 5556677788888999999999997 67899988 799
Q ss_pred CeEEEeec
Q 001636 286 RSYVCDVN 293 (1040)
Q Consensus 286 ~s~V~DVN 293 (1040)
+|+++|+|
T Consensus 271 ~p~LLEIN 278 (329)
T PF15632_consen 271 NPKLLEIN 278 (329)
T ss_pred CEEEEEeC
Confidence 99999999
No 60
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.36 E-value=5.3e-06 Score=102.41 Aligned_cols=207 Identities=17% Similarity=0.238 Sum_probs=127.6
Q ss_pred CcCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001636 62 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
.+|++.+-..-++-. -....++++.+ ||+=.+..+..+..||..+-++|+++|||+|++..+.+..-. .+.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChH
Confidence 478776654322334 36788999998 677789999999999999999999999999999888752100 0000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001636 140 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 218 (1040)
Q Consensus 140 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVK 218 (1040)
..+.---..++.|+|+||..+- .+.|+. ++.|.. ++..-+. .++-+..+|+|||+. +|..+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~-~grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRL-GSREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccC-CCEEEE
Confidence 0010000124579999999974 233332 111111 1111010 122345689999985 578999
Q ss_pred EEEECCce---EEE--eeccCCCCCCee--eec--CCCC---ceeeeeeCCHH----HHHHHHHHHHHhcC-eeeeEeee
Q 001636 219 VYTVGPEY---AHA--EARKSPVVDGVV--MRN--PDGK---EVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 281 (1040)
Q Consensus 219 vytVG~~~---vhA--e~RKSPvvDG~v--rrN--~hgk---e~r~~v~Lt~~----Ek~iA~k~~~afgq-~VCGfDLL 281 (1040)
|-++|..- +.+ ..+.. ..+.+ ..+ .+|+ .+.+|..|+++ =+++|.++++++|. .+|.+|++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998642 221 12221 12222 111 2333 23457778764 35678899999995 46789988
Q ss_pred ee-CCCeEEEeec
Q 001636 282 RC-EGRSYVCDVN 293 (1040)
Q Consensus 282 Rs-~g~s~V~DVN 293 (1040)
=. +|.+||+|||
T Consensus 741 v~~~g~~yv~EiN 753 (809)
T PRK14573 741 LDEEGNFWLSEMN 753 (809)
T ss_pred EcCCCCEEEEEee
Confidence 76 5779999999
No 61
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.34 E-value=2.1e-06 Score=102.60 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=120.1
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001636 63 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 142 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i 142 (1040)
||++ ++-....+. .++++++..++.+.++.++..+.+||...-+.|+++|||+|++..+.... +....+
T Consensus 84 ~dvI-t~e~e~v~~-~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~---------el~~~~ 152 (577)
T PLN02948 84 CDVL-TVEIEHVDV-DTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE---------SAEKAG 152 (577)
T ss_pred CCEE-EEecCCCCH-HHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH---------HHHHHH
Confidence 5543 444444444 35588888887677899999999999999999999999999999886520 111122
Q ss_pred EEcceecCCCEEEeecccc--CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001636 143 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 220 (1040)
Q Consensus 143 ~v~G~~~~kPfVeKpv~ge--dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvy 220 (1040)
. .++.|+|+||.+|. -.++++-.... .....++..+ ..+..+|.|+||+ ....+-|.
T Consensus 153 ~----~ig~P~VvKP~~ggs~g~Gv~~v~~~~---eL~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 153 D----LFGYPLMLKSRRLAYDGRGNAVAKTEE---DLSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H----hcCCcEEEEeCCCCCCCCCeEEECCHH---HHHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 23479999999753 35555443322 1222333221 1134689999994 23666666
Q ss_pred EECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCe-eeeEeeeeeCC-CeEEEe
Q 001636 221 TVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCD 291 (1040)
Q Consensus 221 tVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g-~s~V~D 291 (1040)
+++. .+.. -|+++- +.++........|..|+++ =+++|.++++++|.. ++.+|+.-+.+ ..||+|
T Consensus 212 v~r~~~G~i~~-----~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~E 285 (577)
T PLN02948 212 VARSRDGSTRC-----YPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNE 285 (577)
T ss_pred EEECCCCCEEE-----ecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEE
Confidence 6632 2221 343322 2222111222356777763 356788999999743 55789888755 479999
Q ss_pred ec
Q 001636 292 VN 293 (1040)
Q Consensus 292 VN 293 (1040)
||
T Consensus 286 In 287 (577)
T PLN02948 286 VA 287 (577)
T ss_pred Ee
Confidence 99
No 62
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.29 E-value=2.3e-06 Score=100.36 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=110.3
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEE
Q 001636 78 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVE 155 (1040)
Q Consensus 78 kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVe 155 (1040)
+..+.++..+ ||+.-+..+-.+..||..+.++++++|||+|++.++..+. .++... +....++-|+|+
T Consensus 117 ~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVV 186 (493)
T PRK06524 117 ETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVV 186 (493)
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEE
Confidence 4555566666 6779999999999999999999999999999998764321 111111 111124579999
Q ss_pred eecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee--eEEEEECC-ceEEEee
Q 001636 156 KPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD--VKVYTVGP-EYAHAEA 231 (1040)
Q Consensus 156 Kpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~D--VKvytVG~-~~vhAe~ 231 (1040)
||..|. -+++++-..... ...++.+. -.+..+++|+||. |.- |=|++-+. .+++.-.
T Consensus 187 KP~~GGSS~GV~~Vkn~eE---Le~a~~~~--------------~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~ 247 (493)
T PRK06524 187 QTPYGDSGSTTFFVRGQRD---WDKYAGGI--------------VGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAM 247 (493)
T ss_pred EECCCCCCcCEEEeCCHHH---HHHHHHHh--------------cCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccc
Confidence 999874 333333332110 11111111 0123478899985 433 22343332 2322211
Q ss_pred ccCCCCCCeeeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhc----CeeeeEeeeee--CCCeEEEeec
Q 001636 232 RKSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 293 (1040)
Q Consensus 232 RKSPvvDG~vrrN~hgke---~r~~v~Lt~----~Ek~iA~k~~~afg----q~VCGfDLLRs--~g~s~V~DVN 293 (1040)
+. ++-..++. .-.++. ...|..|++ +=+++|.+++++++ ..+++||++-. +|+.|++|||
T Consensus 248 ~e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 248 TS-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred cc-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 11 11000222 012222 244778888 56678899999983 68899999987 5789999999
No 63
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.28 E-value=2e-06 Score=109.06 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=121.1
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001636 62 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 135 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 135 (1040)
.+|++|+.++...+|.-++ ..++..+ ++.-.+..+..+.+||....++|.++|||+|++..++...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 153 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSME-------- 153 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHH--------
Confidence 4799999887665564333 1356666 4666899999999999999999999999999999886621
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001636 136 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 214 (1040)
Q Consensus 136 ~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G 214 (1040)
+..+.+. .++-|+|+||..|. ..++++..... -...+++.. + .....+.+|+||||+-.
T Consensus 154 -e~~~~~~----~ig~PvVVKP~~g~gg~Gv~iv~~~e---eL~~a~~~~------~-----~~s~~~~vlvEe~I~G~- 213 (1066)
T PRK05294 154 -EALEVAE----EIGYPVIIRPSFTLGGTGGGIAYNEE---ELEEIVERG------L-----DLSPVTEVLIEESLLGW- 213 (1066)
T ss_pred -HHHHHHH----HcCCCeEEEcCCCCCCCCeEEECCHH---HHHHHHHHH------H-----hhCCCCeEEEEEcccCc-
Confidence 1112221 22369999999874 23333322211 111112110 0 01124578999999631
Q ss_pred eeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhcCe--eeeEee
Q 001636 215 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFDL 280 (1040)
Q Consensus 215 ~DVKvytVG~---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq~--VCGfDL 280 (1040)
..+-+-++.. +.+ ..+.+..| .| .|.+++. .|. .|++++ +++|.++++++|.. +|.||+
T Consensus 214 ~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 214 KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 2333322211 111 12233333 11 2444442 233 578755 37899999999998 999999
Q ss_pred eee--CCCeEEEeec
Q 001636 281 LRC--EGRSYVCDVN 293 (1040)
Q Consensus 281 LRs--~g~s~V~DVN 293 (1040)
.-. +|..||+|||
T Consensus 287 ~~~~~~g~~~viEiN 301 (1066)
T PRK05294 287 ALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEECCCCcEEEEEee
Confidence 876 3679999999
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.28 E-value=1.5e-06 Score=110.75 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=116.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 136 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~r~~p~~~~~~~~ 136 (1040)
.+|++++.| ||-- ....+-++..+ +|+-++.+...+++||....++|.++|||+|.... +... .
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~---------e 146 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDI---------E 146 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCH---------H
Confidence 478999866 3322 12233344445 56778999999999999999999999999976553 2221 0
Q ss_pred ccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCe
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 215 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~ 215 (1040)
+..+... .++.|+|+||..|. ..++.+..... -....|+...+.+- ....++.+++|+||. ++.
T Consensus 147 ea~~~a~----~iGyPvVVKP~~GgGGrGv~vV~~~e---EL~~a~~~a~~ea~-------~~fg~~~vlVEefI~-g~~ 211 (1146)
T PRK12999 147 EALEFAE----EIGYPIMLKASAGGGGRGMRIVRSEE---ELEEAFERAKREAK-------AAFGNDEVYLEKYVE-NPR 211 (1146)
T ss_pred HHHHHHH----HhCCCEEEEECCCCCCCCeEEeCCHH---HHHHHHHHHHHHHH-------hhcCCCcEEEecCCC-CCe
Confidence 1111111 23479999999986 12222221110 11112221100000 001256799999996 345
Q ss_pred eeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCc--eeeeeeCCHHHH----HHHHHHHHHhcCee-eeEeeeeeC-
Q 001636 216 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKE--VRYPVLLTPNEK----QMAREVCIAFRQAV-CGFDLLRCE- 284 (1040)
Q Consensus 216 DVKvytVG---~~~vhAe~RKSPvvDG~vrrN~hgke--~r~~v~Lt~~Ek----~iA~k~~~afgq~V-CGfDLLRs~- 284 (1040)
.|-|-++| ++++|--.|-.. +.|+ |.|- ..-...|+++.+ ++|.++++++|..= +.+|++-..
T Consensus 212 ~ieVqvl~D~~G~vv~l~erdcs-----vqrr-~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d 285 (1146)
T PRK12999 212 HIEVQILGDKHGNVVHLYERDCS-----VQRR-HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD 285 (1146)
T ss_pred EEEEEEEEECCCCEEEEEccccc-----eeec-CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC
Confidence 56665554 355665444332 2221 2332 221235776543 48899999999854 449999874
Q ss_pred CCeEEEeec
Q 001636 285 GRSYVCDVN 293 (1040)
Q Consensus 285 g~s~V~DVN 293 (1040)
|++|++|||
T Consensus 286 g~~yfIEIN 294 (1146)
T PRK12999 286 GNFYFIEVN 294 (1146)
T ss_pred CCEEEEEEE
Confidence 589999999
No 65
>PLN02735 carbamoyl-phosphate synthase
Probab=98.23 E-value=3.6e-06 Score=107.20 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=127.0
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001636 62 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 135 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 135 (1040)
.+|++|+-++...++.=++ .-++..+ |+.-++..+..+..||...-++|.++|||+|++..+....
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 169 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLD-------- 169 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHH--------
Confidence 6899999887666664333 2356666 6888999999999999999999999999999998886520
Q ss_pred cccCCeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCC
Q 001636 136 IEEEDFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 213 (1040)
Q Consensus 136 ~e~~d~i~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~ 213 (1040)
+..+.+. +++ -|+|+||..|. ..+++|-+... -.+..++..- ....+..+|+||||.-
T Consensus 170 -ea~~~~~~iG~----yPvVVKP~~~~GG~Gv~iv~n~e---EL~~a~~~a~-----------~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 170 -ECFEIAEDIGE----FPLIIRPAFTLGGTGGGIAYNKE---EFETICKAGL-----------AASITSQVLVEKSLLG- 229 (1102)
T ss_pred -HHHHHHHHhCC----CCEEEEeCCCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEecCC-
Confidence 1112221 332 69999999853 23444433221 1112222110 1123567899999963
Q ss_pred CeeeEEEEECC---ce--EEEeeccCCCCCCeeeecCCCCcee--eee-eCCHHHH----HHHHHHHHHhcC--eeeeEe
Q 001636 214 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNEK----QMAREVCIAFRQ--AVCGFD 279 (1040)
Q Consensus 214 G~DVKvytVG~---~~--vhAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~Ek----~iA~k~~~afgq--~VCGfD 279 (1040)
..-+-|=+++. +. +-.+.+..| .| .|.+... .|. .|++++. .+|.+|++++|. -+|.+|
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24455555542 22 223444444 23 2434432 244 4787554 458999999997 589999
Q ss_pred eeee--CCCeEEEeec-Cce
Q 001636 280 LLRC--EGRSYVCDVN-GWS 296 (1040)
Q Consensus 280 LLRs--~g~s~V~DVN-GwS 296 (1040)
+.-. +|..||+||| ..|
T Consensus 303 f~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred EEEECCCCcEEEEEecCCCC
Confidence 9865 5789999999 455
No 66
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.22 E-value=1.5e-06 Score=91.11 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=98.0
Q ss_pred HHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCC
Q 001636 109 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 187 (1040)
Q Consensus 109 iL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~ 187 (1040)
+|+++|||||+++++.+.. ...+.+.-.=..++.|+|+||..+ +-.+|.+ -.+ ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~---------~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~----~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNE---------DDSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHN----EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTS---------HHHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESS----HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEeccc---------ccchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCC----HHHHHHHHHH-
Confidence 5889999999999999841 011111111123457999999986 3333332 211 1123332211
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEEC---CceEEEeeccCCCCCCeeeec------CCCCceeeeeeCCH
Q 001636 188 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 258 (1040)
Q Consensus 188 sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG---~~~vhAe~RKSPvvDG~vrrN------~hgke~r~~v~Lt~ 258 (1040)
..+-+..+|.|||| .|.++-|-++| ..+...+....+ ++.+.-+ ........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12346678999999 89999999999 666666666664 3443321 13345555667776
Q ss_pred H----HHHHHHHHHHHhcC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001636 259 N----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 296 (1040)
Q Consensus 259 ~----Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 296 (1040)
+ =+++|.++.+++|. .+|=||+.=. +|.+||+||| |++
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt 178 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLT 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-S
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCccccc
Confidence 4 35789999999997 7899998755 7889999999 664
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.16 E-value=1.2e-05 Score=102.40 Aligned_cols=197 Identities=13% Similarity=0.217 Sum_probs=122.0
Q ss_pred CcCeeeccccCCCchHHH---HHHHHHc----------CCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCC
Q 001636 62 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 128 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p 128 (1040)
.+|++|+-||...|+.-| .+++... =+++..+.++..+..||.+.-++|+++|||+|++..+....
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~e- 727 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEA- 727 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHH-
Confidence 379999999988776322 2233322 24678899999999999999999999999999998775510
Q ss_pred CcccccccccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEe
Q 001636 129 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 207 (1040)
Q Consensus 129 ~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyE 207 (1040)
+....+. .++.|+|+||..|- ..++.|-+.... ....++.. . ....++.+|+|
T Consensus 728 --------ea~~~a~----~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a---~--------~~~~~~~vlVE 781 (1102)
T PLN02735 728 --------DALAIAK----RIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETA---V--------EVDPERPVLVD 781 (1102)
T ss_pred --------HHHHHHH----hcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHH---H--------HhcCCCCEEEE
Confidence 1111111 23579999999974 233333332211 11111111 0 01125579999
Q ss_pred eccCCCCeeeEEEEECC---ceEE--EeeccCCCCCCeeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhcC-e
Q 001636 208 EFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-A 274 (1040)
Q Consensus 208 EFi~~~G~DVKvytVG~---~~vh--Ae~RKSPvvDG~vrrN~hgke~r~~v---~Lt~~E----k~iA~k~~~afgq-~ 274 (1040)
+||. +|.-+=|-+++. +++. .+.+.- +...|-++....+ .|+++. +++|.++++++|. .
T Consensus 782 efI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G 853 (1102)
T PLN02735 782 KYLS-DATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCG 853 (1102)
T ss_pred EecC-CcEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 9995 456666665653 2221 111111 1223545444333 577655 4678999999985 4
Q ss_pred eeeEeeeee-CCCeEEEeec
Q 001636 275 VCGFDLLRC-EGRSYVCDVN 293 (1040)
Q Consensus 275 VCGfDLLRs-~g~s~V~DVN 293 (1040)
++.+|++-+ +|++||+|||
T Consensus 854 ~~~vqf~v~~dg~~yviEiN 873 (1102)
T PLN02735 854 LMNCQYAITPSGEVYIIEAN 873 (1102)
T ss_pred eeeEEEEEcCCCcEEEEEEe
Confidence 677999874 6889999999
No 68
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=9e-06 Score=91.03 Aligned_cols=189 Identities=17% Similarity=0.217 Sum_probs=135.4
Q ss_pred HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEE
Q 001636 77 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 155 (1040)
Q Consensus 77 ~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVe 155 (1040)
..+..|++..+ ||+...+.+=+..-|+-.+-++++..|||++.++..+++... + +..+.+.. .+.-|+++
T Consensus 77 g~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~-~----~~~e~~~~----~l~~p~~V 147 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYS-S----VIVEEVEE----GLGFPLFV 147 (317)
T ss_pred chHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccch-h----HHHHHhhc----ccCCCEEE
Confidence 47788999998 999999999999999999999999999999999999985211 0 01111222 23589999
Q ss_pred eeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCC
Q 001636 156 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP 235 (1040)
Q Consensus 156 Kpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSP 235 (1040)
||...- --+.+.-.++.|-|- +..+- ..+.+...+.|+|+. |..|.|=+.|... +++.-++
T Consensus 148 kp~~~g-SSvg~~~v~~~~d~~-----------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~ 208 (317)
T COG1181 148 KPAREG-SSVGRSPVNVEGDLQ-----------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPL 208 (317)
T ss_pred EcCCcc-ceeeEEEeeeccchH-----------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcc--cceecCc
Confidence 998752 234444444444443 21221 456788889999999 9999999999866 2222221
Q ss_pred --C-CCC-ee----eecCCCCceeee--eeCCH----HHHHHHHHHHHHhc-CeeeeEeeeeeC--CCeEEEeec
Q 001636 236 --V-VDG-VV----MRNPDGKEVRYP--VLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVN 293 (1040)
Q Consensus 236 --v-vDG-~v----rrN~hgke~r~~--v~Lt~----~Ek~iA~k~~~afg-q~VCGfDLLRs~--g~s~V~DVN 293 (1040)
+ .+| .| ..|+++++..+. -.||+ +=+++|.+|.+|+| ..+||+|++-.. |..|++|||
T Consensus 209 ~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvN 283 (317)
T COG1181 209 GEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVN 283 (317)
T ss_pred eEEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEe
Confidence 0 132 33 267884443333 23676 45789999999999 999999999988 899999999
No 69
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=87.32 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=124.8
Q ss_pred CcCe--eeccccCC--Cch-HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001636 62 ICDC--LIAFYSSG--YPL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 136 (1040)
Q Consensus 62 ~~D~--lIsf~s~g--fpl-~kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~ 136 (1040)
.||+ +|+--++| +.| ..+-+|++..++ +..+.++.-|+|++|..|..+ +++|.|...-.
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~----------- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWAE----------- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-----------
Confidence 4664 34444444 344 356778887776 468999999999999999999 99999874211
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----
Q 001636 137 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---- 212 (1040)
Q Consensus 137 e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~---- 212 (1040)
.. +-+|+||.+|. +|.|. +|-. =. .++ .|-||||+-
T Consensus 137 -------~~-----~k~ViKp~dgC-----------gge~i--~~~~-------~~-------pd~-~i~qEfIeG~~lS 176 (307)
T COG1821 137 -------EP-----KKYVIKPADGC-----------GGEGI--LFGR-------DF-------PDI-EIAQEFIEGEHLS 176 (307)
T ss_pred -------CC-----ceEEecccccC-----------Cccee--eccC-------CC-------cch-hhHHHhcCCcceE
Confidence 12 46999999998 66665 2210 01 133 788999874
Q ss_pred ----CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhc-C-eeeeEeeeeeCCC
Q 001636 213 ----GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-Q-AVCGFDLLRCEGR 286 (1040)
Q Consensus 213 ----~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg-q-~VCGfDLLRs~g~ 286 (1040)
.|++|.+.+|..+++.- +..+.--.|+..++...|+.+-.++|+++.+-++ + --.||||+=+ +.
T Consensus 177 VSL~~GEkv~pLsvNrQfi~~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~ 246 (307)
T COG1821 177 VSLSVGEKVLPLSVNRQFIIF---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE 246 (307)
T ss_pred EEEecCCccccceechhhhhh---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC
Confidence 58888888887776543 4556667899999999999999999999999887 3 4679999999 99
Q ss_pred eEEEeec
Q 001636 287 SYVCDVN 293 (1040)
Q Consensus 287 s~V~DVN 293 (1040)
|||+|||
T Consensus 247 pYvIEIN 253 (307)
T COG1821 247 PYVIEIN 253 (307)
T ss_pred cEEEEec
Confidence 9999999
No 70
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.11 E-value=1.1e-05 Score=93.29 Aligned_cols=204 Identities=16% Similarity=0.177 Sum_probs=113.4
Q ss_pred cCeeeccccCCCchHH-HHHHHHHcCCccc-CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001636 63 CDCLIAFYSSGYPLEK-AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 140 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~k-ai~y~~lr~p~~i-Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d 140 (1040)
+|++|+... -|+.. +...++..+..++ -+..+-.+.+||..+-++|.++|||+|++..++.. .+..+
T Consensus 69 iD~Vv~g~E--~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPE--DPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 677775332 34433 3344566664332 22334457789999999999999999998877551 12222
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 141 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 141 ~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
++. .+..|+|+||..+. ..+|+|...... ....++.+-.. +.|. ..+..+|.||||. |.-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEE
Confidence 332 12369999999764 333433332211 11111111000 0010 1234799999997 444444
Q ss_pred EEE--CCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---c---CeeeeEeeee
Q 001636 220 YTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---R---QAVCGFDLLR 282 (1040)
Q Consensus 220 ytV--G~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~E-----k~iA~k~~~af---g---q~VCGfDLLR 282 (1040)
.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++. ++|+.++.+++ | .-|..+|+.=
T Consensus 202 ~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i 280 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI 280 (426)
T ss_pred EEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE
Confidence 443 333221 22112 224677666777777666765 47632 23555566555 4 4567778777
Q ss_pred eCCC-eEEEeecC
Q 001636 283 CEGR-SYVCDVNG 294 (1040)
Q Consensus 283 s~g~-s~V~DVNG 294 (1040)
+.+| +||+|+|-
T Consensus 281 t~~g~~~vlE~n~ 293 (426)
T PRK13789 281 SPEGEPKVVEFNC 293 (426)
T ss_pred cCCCCEEEEEEec
Confidence 7655 99999994
No 71
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.10 E-value=8.9e-06 Score=103.26 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=118.9
Q ss_pred CcCeeeccccCCCchHHH-----HHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001636 62 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 135 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 135 (1040)
.+|++++.++...++.-+ ..-++..+. +.-.+.++..+.+||....+.|.++|||+|++..+....
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 152 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVE-------- 152 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHH--------
Confidence 579999988755555322 234666774 566889999999999999999999999999998886521
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccc--cccceEEeeccCC
Q 001636 136 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPT 212 (1040)
Q Consensus 136 ~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r--~~gsyIyEEFi~~ 212 (1040)
+..+... .++-|+|+||..|. .|.|+. + +.|.. ++..-+. ..+ ..+.+|.||||+-
T Consensus 153 -e~~~~~~----~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 153 -EALAAAK----EIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred -HHHHHHH----HhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 1111111 23469999999874 333432 1 11111 1110000 011 1257899999973
Q ss_pred -CCeeeEEEEEC-CceE--EEeeccCCCCCCeeeecCCCCce--eeee-eCCHHHH----HHHHHHHHHhcCe-eeeEee
Q 001636 213 -GGTDVKVYTVG-PEYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNEK----QMAREVCIAFRQA-VCGFDL 280 (1040)
Q Consensus 213 -~G~DVKvytVG-~~~v--hAe~RKSPvvDG~vrrN~hgke~--r~~v-~Lt~~Ek----~iA~k~~~afgq~-VCGfDL 280 (1040)
.=-.+-|+.-+ ++.+ ..+.+--| .| .|-+++ -.|. .|++++. ++|.++++++|.. +|.||+
T Consensus 212 ~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef 284 (1050)
T TIGR01369 212 WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQF 284 (1050)
T ss_pred ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEE
Confidence 11233333221 1222 22334344 22 232332 2344 3787654 5888899999985 788998
Q ss_pred eee--CCCeEEEeec
Q 001636 281 LRC--EGRSYVCDVN 293 (1040)
Q Consensus 281 LRs--~g~s~V~DVN 293 (1040)
.-. +|+.||+|||
T Consensus 285 ~l~~~~g~~~viEiN 299 (1050)
T TIGR01369 285 ALNPDSGRYYVIEVN 299 (1050)
T ss_pred EEECCCCcEEEEEee
Confidence 876 4679999999
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.91 E-value=2.8e-05 Score=99.97 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=115.9
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCc-EEEEeccCCCcccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 137 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~-~~~~~r~~p~~~~~~~~e 137 (1040)
.+|++|+-|+ |-- ....+.++..+ +|+-++.++..+++||....++|+++|||+|. +.++... + +
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~--d-------e 141 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL--D-------E 141 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH--H-------H
Confidence 4678887653 321 23456677777 46778899999999999999999999999855 5444331 0 1
Q ss_pred cCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001636 138 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 216 (1040)
Q Consensus 138 ~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~D 216 (1040)
..+.+. .++.|+|+||..|. ..++.+..... -....|+.+.+.+..+ + .+..+|.||||. +|.-
T Consensus 142 a~~~a~----~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~-g~~e 206 (1201)
T TIGR02712 142 ALEAAK----EIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGESF------F-GDAGVFLERFVE-NARH 206 (1201)
T ss_pred HHHHHH----hcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHHh------c-CCCcEEEEecCC-CCEE
Confidence 111111 23479999999985 22333322111 1223333332111000 0 134589999996 3456
Q ss_pred eEEEEECC---ceEEEeeccCCCCCCeee-ecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCe-eeeEeeeeeC--C
Q 001636 217 VKVYTVGP---EYAHAEARKSPVVDGVVM-RNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE--G 285 (1040)
Q Consensus 217 VKvytVG~---~~vhAe~RKSPvvDG~vr-rN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~--g 285 (1040)
+-|.++|. .+++--.|-. .+. +|..--+..-+..|+++ =.++|.++++++|.. ++.+|++-.. +
T Consensus 207 veV~v~~Dg~g~vv~lg~rd~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g 281 (1201)
T TIGR02712 207 VEVQIFGDGKGKVVALGERDC-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD 281 (1201)
T ss_pred EEEEEEECCCCeEEEeeEEEe-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC
Confidence 76766652 3343322221 111 11111111111134543 345788889998865 7779999864 7
Q ss_pred CeEEEeecC
Q 001636 286 RSYVCDVNG 294 (1040)
Q Consensus 286 ~s~V~DVNG 294 (1040)
++||+|||.
T Consensus 282 ~~y~lEVNp 290 (1201)
T TIGR02712 282 EFYFLEVNT 290 (1201)
T ss_pred CEEEEEEEC
Confidence 899999995
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.90 E-value=3.7e-05 Score=97.98 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=117.6
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001636 62 ICDCLIAFYSSGYPLEKAE-----SYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 135 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai-----~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 135 (1040)
.+|++|+.++....+.-++ ..++..+. +.-.+..+..+.+||....++|.++|||+|++..+....
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 153 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVE-------- 153 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHH--------
Confidence 5899999887544553333 14566664 445788999999999999999999999999999886621
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001636 136 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 214 (1040)
Q Consensus 136 ~e~~d~i~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G 214 (1040)
+..+.+. .++-|+|+||..|- ..++++..... -...+++..- .....+.+|.||||+-.
T Consensus 154 -e~~~~~~----~igyPvVVKP~~g~gG~Gv~iv~~~e---EL~~a~~~~~-----------~~s~~~~vLVEe~I~G~- 213 (1068)
T PRK12815 154 -EALAFAE----KIGFPIIVRPAYTLGGTGGGIAENLE---ELEQLFKQGL-----------QASPIHQCLLEESIAGW- 213 (1068)
T ss_pred -HHHHHHH----HcCCCEEEEECcCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEccCCC-
Confidence 1112221 13369999999874 23333322211 1111221110 00123579999999631
Q ss_pred eeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhcC-eeeeEeee
Q 001636 215 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQ-AVCGFDLL 281 (1040)
Q Consensus 215 ~DVKvytVG~---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq-~VCGfDLL 281 (1040)
..+=+-++.. +++ .++.+-.| .| .|.|... .|. .|++++ +++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 2333333321 222 22222222 22 1222221 233 477765 4688899999998 47889987
Q ss_pred ee--CCCeEEEeec
Q 001636 282 RC--EGRSYVCDVN 293 (1040)
Q Consensus 282 Rs--~g~s~V~DVN 293 (1040)
-. +|++||+|||
T Consensus 287 l~~~~g~~~ViEIN 300 (1068)
T PRK12815 287 LDPKSKQYYLIEVN 300 (1068)
T ss_pred EECCCCcEEEEEEe
Confidence 65 3679999999
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.85 E-value=6.1e-05 Score=88.77 Aligned_cols=202 Identities=16% Similarity=0.097 Sum_probs=116.0
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCC-cEEEEeccCCCcccccccccC
Q 001636 63 CDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 139 (1040)
Q Consensus 63 ~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P-~~~~~~r~~p~~~~~~~~e~~ 139 (1040)
+|++|+...+ |+. .+-..++..+. +.-++..+-.+.+||...-++|+++|||+| .+..++.. .+..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~---------~ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDV---------EEAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCH---------HHHH
Confidence 6788874433 552 33355666664 445888888889999999999999999997 56554431 1222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCC-Ccccc--------cC---Ccccc-ccccceEE
Q 001636 140 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RSSEF--------HP---DVRRV-RREGSYIY 206 (1040)
Q Consensus 140 d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign-~sS~~--------~p---~l~~~-r~~gsyIy 206 (1040)
++++. + .|+|+||..+. .|.|+. +...... .++.+ +. ....+ ..+..+|.
T Consensus 139 ~~~~~----~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 139 KFIEY----G-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHhh----c-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 23321 1 39999999986 555663 2221110 00000 00 00011 23567999
Q ss_pred eeccCCCCeeeEEEEECCceEE---EeeccCCCCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhcCe
Q 001636 207 EEFMPTGGTDVKVYTVGPEYAH---AEARKSPVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQA 274 (1040)
Q Consensus 207 EEFi~~~G~DVKvytVG~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~----v~-Lt~~E----k~iA~k~~~afgq~ 274 (1040)
||||.-.=-.|=+++-|..+.. +..-| .+.||+.--|+.|=+.=.| +. +++++ .+++.++.++++..
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k-~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~ 280 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYP-HAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKE 280 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeec-ceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999832234445554544331 11111 1246666667766554333 22 34433 24577777777643
Q ss_pred -------eeeEeeeee-CCCeEEEeec
Q 001636 275 -------VCGFDLLRC-EGRSYVCDVN 293 (1040)
Q Consensus 275 -------VCGfDLLRs-~g~s~V~DVN 293 (1040)
++-+++.-+ .+||+|+|+|
T Consensus 281 ~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 281 TGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred cCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 445677778 9999999999
No 75
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.68 E-value=7.8e-05 Score=78.55 Aligned_cols=168 Identities=25% Similarity=0.364 Sum_probs=100.6
Q ss_pred CCcchhhHHhhHHHHH----HH---HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001636 92 NELEPQHLLHDRRKVY----EQ---LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 164 (1040)
Q Consensus 92 Ndl~~q~~l~DR~~vl----qi---L~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHn 164 (1040)
|+|.+.+.+.||-=++ +| |-....|+=.-.+... ..+.+.-- ..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn------------h~em~s~~----~fPvVvKvG~~h--- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN------------HREMLSAP----RFPVVVKVGHAH--- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS------------GGGGCS-S----SSSEEEEESS-S---
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC------------hhhhccCC----CCCEEEEEcccc---
Confidence 7888888888883222 22 2233444322222221 22333222 369999986554
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccce-EEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee
Q 001636 165 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 242 (1040)
Q Consensus 165 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsy-IyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vr 242 (1040)
+|-|-. |+-|+.. |. |+. .+....+| -.|-||.. --|||+--+|++| -|+.|+|. .|--.
T Consensus 62 --------~G~GKv----kv~n~~~-~q-Di~sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 --------AGMGKV----KVDNQQD-FQ-DIASLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp --------TTTTEE----EE-SHHH-HH-HHHHHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred --------CceeEE----EEccHHH-HH-HHHHHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 566642 4444432 21 111 22333344 45667733 4799999999998 89999994 77777
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCeeeeEeeeee-CCCeEEEeecCcee
Q 001636 243 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRC-EGRSYVCDVNGWSF 297 (1040)
Q Consensus 243 rN~hgke~r~~v~Lt~~Ek~iA~k~~~af-gq~VCGfDLLRs-~g~s~V~DVNGwSF 297 (1040)
.|+ |-.+-..|.+|+..|...-.+++.| |++|||+|.|-+ .|+=|++|||+=|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 776 6667778999999999999999999 999999999999 58899999997543
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=97.67 E-value=0.0001 Score=80.39 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=114.5
Q ss_pred cCCcccCCcchhhHHhhHHHHHHHHHhCC-CC--CCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001636 86 RKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 162 (1040)
Q Consensus 86 r~p~~iNdl~~q~~l~DR~~vlqiL~~~g-Ip--~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ged 162 (1040)
++....|. -+.|+|.+|+.|.+.. +. +|.|...... .+....+.-- +-+.+||..|.
T Consensus 7 ~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---------~~l~~~L~~y-----~~vylKP~~Gs- 66 (262)
T PF14398_consen 7 KGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---------EDLREMLNKY-----KSVYLKPDNGS- 66 (262)
T ss_pred CCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---------HHHHHHHHHC-----CEEEEEeCCCC-
Confidence 44555554 3479999999999863 44 7778766541 0222333323 35889999997
Q ss_pred cceEEEeccCCCChHHHHHhhhCC-Cccccc------CCccccccccceEEeeccCC---CC--eeeEEEEEC--C---c
Q 001636 163 HSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P---E 225 (1040)
Q Consensus 163 Hni~IYyp~~~GgG~~~Lfrkign-~sS~~~------p~l~~~r~~gsyIyEEFi~~---~G--~DVKvytVG--~---~ 225 (1040)
.+..|+.=...++|..--++.-+. ....|. .-+...-....||+|+.|+- +| -|+||.+-= . .
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 333333333333222111111111 000111 00111225679999999976 56 899999982 2 4
Q ss_pred eEEEeeccCCCCCCeeeecCCCCceeeeee--CCH---------HH----HHHHHHHHHHhcC--eeeeEeeeee-CCCe
Q 001636 226 YAHAEARKSPVVDGVVMRNPDGKEVRYPVL--LTP---------NE----KQMAREVCIAFRQ--AVCGFDLLRC-EGRS 287 (1040)
Q Consensus 226 ~vhAe~RKSPvvDG~vrrN~hgke~r~~v~--Lt~---------~E----k~iA~k~~~afgq--~VCGfDLLRs-~g~s 287 (1040)
+....+|.++ .|.+-.|.++|+...++. |+. += ..+|..+.+.||- .-.|+||-=. +|+.
T Consensus 147 vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~i 224 (262)
T PF14398_consen 147 VTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKI 224 (262)
T ss_pred EEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCE
Confidence 6778999997 999999999887765541 111 11 2344555566774 7789999655 8999
Q ss_pred EEEeecC
Q 001636 288 YVCDVNG 294 (1040)
Q Consensus 288 ~V~DVNG 294 (1040)
.++|||.
T Consensus 225 WliEvN~ 231 (262)
T PF14398_consen 225 WLIEVNS 231 (262)
T ss_pred EEEEEeC
Confidence 9999996
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.31 E-value=0.0072 Score=69.27 Aligned_cols=178 Identities=19% Similarity=0.218 Sum_probs=102.8
Q ss_pred HcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001636 85 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 164 (1040)
Q Consensus 85 lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHn 164 (1040)
+.-|+. -+..+-...+||.+-.+.|.++|||+|+++ .. + ++ ++ .|+|+||..|.+ +
T Consensus 107 ~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~--~----------~~---i~-----~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKY--ES--P----------ED---ID-----RPVIVKLPGAKG-G 162 (358)
T ss_pred CCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC--H----------HH---cC-----CCEEEEeCCCCC-C
Confidence 434432 355577888999999999999999999962 22 1 11 12 599999988853 3
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEE---CCceEEEeeccCCC-CCCe
Q 001636 165 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 240 (1040)
Q Consensus 165 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytV---G~~~vhAe~RKSPv-vDG~ 240 (1040)
-.++...+.. -....++.+-++. .+ .....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~-El~~~~~~l~~~~-~~-------~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPE-EFKEKIDKLIERG-LI-------TEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHH-HHHHHHHHHHhcc-cc-------CCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 3444443322 1233344332211 11 126779999999742223335654 66566666665433 5677
Q ss_pred eee--c---CCCCceeeeee------CC----HHHHHHHHHHHHH----h-cCeee--eEeeeee-CCCeEEEeecCc
Q 001636 241 VMR--N---PDGKEVRYPVL------LT----PNEKQMAREVCIA----F-RQAVC--GFDLLRC-EGRSYVCDVNGW 295 (1040)
Q Consensus 241 vrr--N---~hgke~r~~v~------Lt----~~Ek~iA~k~~~a----f-gq~VC--GfDLLRs-~g~s~V~DVNGw 295 (1040)
||- . ..+.+-.|++. +. ++=..++.+++++ + +..+| .+|.+.+ ++..+|+|||+=
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R 311 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISAR 311 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCc
Confidence 762 1 12233333333 22 4444566666666 5 55544 4566776 456799999863
No 78
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.20 E-value=0.0009 Score=75.33 Aligned_cols=154 Identities=23% Similarity=0.374 Sum_probs=99.7
Q ss_pred cccCCcc-hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001636 89 FLVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 167 (1040)
Q Consensus 89 ~~iNdl~-~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~I 167 (1040)
+.=|+-. .-..+-.|.+-|+.|...|.|.|.+--+ +.+..+ -+|.|+||++|.
T Consensus 107 v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~----------------e~~~~g----ekt~IlKPv~Ga------ 160 (389)
T COG2232 107 VAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI----------------EPLEEG----EKTLILKPVSGA------ 160 (389)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhh----------------hhhhhc----ceeeEEeeccCC------
Confidence 3345555 6677778899999999999997754211 112233 279999999995
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---------CCeeeEEEEECCceEEEeeccCCCCC
Q 001636 168 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVD 238 (1040)
Q Consensus 168 Yyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~---------~G~DVKvytVG~~~vhAe~RKSPvvD 238 (1040)
| |. ++.+ .++.+. . -.-+|.||||+- +|+|....+|..+++- .-++- -
T Consensus 161 ------G-G~---~el~-----~~~Ee~-~---~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~--~~~~~--~ 217 (389)
T COG2232 161 ------G-GL---VELV-----KFDEED-P---PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID--GLRGE--Y 217 (389)
T ss_pred ------C-ce---eeec-----cccccc-C---CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec--ccccc--c
Confidence 3 32 2322 121111 0 177899999972 6788888888777664 11110 0
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCe-eeeEeeeeeCCCeEEEeec
Q 001636 239 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 293 (1040)
Q Consensus 239 G~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 293 (1040)
+-|+ -.|-=+-+++....+=..+|..+..-||+. --|||+|=...||||+|||
T Consensus 218 ~~f~--Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVN 271 (389)
T COG2232 218 SQFV--YKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVN 271 (389)
T ss_pred ccce--eccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEec
Confidence 0011 013334455555545567999999999985 5799999999999999999
No 79
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.85 E-value=0.0022 Score=75.32 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=125.4
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcCCcccCCcc--hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccc
Q 001636 62 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNELE--PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 137 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~iNdl~--~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e 137 (1040)
.+|+++|.|+ |-- .+..+-++..+ ++..... ....+.||...=++++++|||+|.....-- .. ..+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~--~~-----~ee 143 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAV--AD-----NEE 143 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCc--CC-----HHH
Confidence 5899999888 433 44556666666 5555444 456788999999999999999999872110 00 011
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCC-C
Q 001636 138 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT-G 213 (1040)
Q Consensus 138 ~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~---~~r~~gsyIyEEFi~~-~ 213 (1040)
......- ++-|+|+||..|- -|.|++ +.+....-..-|..-.. ...-++.++.|+|+.. .
T Consensus 144 ~~~~a~~----iGyPVivKa~~Gg-----------Gg~G~r-~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 144 ALAIAEE----IGYPVIVKAAAGG-----------GGRGMR-VVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred HHHHHHH----cCCCEEEEECCCC-----------CcccEE-EECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 2222222 2379999999996 555663 54433222112221000 1113677999999976 3
Q ss_pred CeeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhcCeeee-Eeeeee-C
Q 001636 214 GTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-E 284 (1040)
Q Consensus 214 G~DVKvytVG~---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~ 284 (1040)
- |=+-+.|+ .++|.-.|-.. .=||+-.=.|..-...++++-+. .|.+++++.|-.-|| |.+|=. +
T Consensus 208 h--ievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~ 281 (449)
T COG0439 208 H--IEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSN 281 (449)
T ss_pred e--EEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Confidence 4 33444444 56888888732 34555555566655566655553 467888888877777 788877 5
Q ss_pred CCeEEEeec
Q 001636 285 GRSYVCDVN 293 (1040)
Q Consensus 285 g~s~V~DVN 293 (1040)
|++|++|+|
T Consensus 282 ~~~yfiEmN 290 (449)
T COG0439 282 GEFYFIEMN 290 (449)
T ss_pred CCEEEEEEe
Confidence 999999999
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.73 E-value=0.00026 Score=75.23 Aligned_cols=161 Identities=22% Similarity=0.326 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHH
Q 001636 102 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 181 (1040)
Q Consensus 102 DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lf 181 (1040)
||.++.+++.+.|||+|.....--+ +.++.+.+- +.++.|.++||..|- -|.|. +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~a-~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEFA-EEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHHH-HHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHHH-HhcCCceEEeecccc-----------ccccc-ccc
Confidence 7899999999999999988755111 112222211 124579999999885 23333 122
Q ss_pred hhhCCCcccccCCccccc------cccceEEeeccCC-CCeeeEEEEECC-ceEEEeeccCCCCCCeeeecCCCC--cee
Q 001636 182 RKVGNRSSEFHPDVRRVR------REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVR 251 (1040)
Q Consensus 182 rkign~sS~~~p~l~~~r------~~gsyIyEEFi~~-~G~DVKvytVG~-~~vhAe~RKSPvvDG~vrrN~hgk--e~r 251 (1040)
+....-.+.+.. ..+ -+..+++|+|+.. .--+|-|..=|. +++|.-.|.. ...| -+|+ ++.
T Consensus 58 ~~~~eL~~~~~~---~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~-----~~~~-hs~dsi~~~ 128 (211)
T PF02786_consen 58 HNEEELEEAFER---AQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGEREC-----SEQR-HSQDSIEEA 128 (211)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEE-----EEEE-TTEEEEEEE
T ss_pred cchhhhhhhhhh---ccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecc-----cccc-ccccceeEe
Confidence 211111111110 111 2788999999986 555665554433 4666666655 2222 2344 344
Q ss_pred eeeeCCHHHHH----HHHHHHHHhcC-eeeeEeeeee--CCCeEEEeecC
Q 001636 252 YPVLLTPNEKQ----MAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNG 294 (1040)
Q Consensus 252 ~~v~Lt~~Ek~----iA~k~~~afgq-~VCGfDLLRs--~g~s~V~DVNG 294 (1040)
-+..||+++++ +|.++|+++|. .+|-|-+|-. ++..||+|||=
T Consensus 129 P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 129 PAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred eccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 45679987764 78899999996 4788999998 79999999994
No 81
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.52 E-value=0.029 Score=64.62 Aligned_cols=170 Identities=18% Similarity=0.214 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC-cceEEEeccCCCChHHH
Q 001636 101 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKE 179 (1040)
Q Consensus 101 ~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~ged-Hni~IYyp~~~GgG~~~ 179 (1040)
+|++.-|++|.++||++|++.-. | + +++ .|+|+||..|.. -...++..++ -..
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p-----------~--eId-----~PVIVKp~~asG~~srG~f~a~s----~eE 178 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----P-----------E--EID-----RPVIVKLPEAKRRLERGFFTASS----YED 178 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----c-----------c--ccC-----ccEEEEECCCCCccccCeEeeCC----HHH
Confidence 46688889999999999998841 1 1 234 599999999871 0111111111 011
Q ss_pred HHhhhCCCc--ccccCCccccccccceEEeeccCCCCeeeEEEEE--CC--ceEEEeeccCCCCCCeeeecCCCC-----
Q 001636 180 LFRKVGNRS--SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMRNPDGK----- 248 (1040)
Q Consensus 180 Lfrkign~s--S~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytV--G~--~~vhAe~RKSPvvDG~vrrN~hgk----- 248 (1040)
|.++....+ ..++ -.....+++||||.-.--.+-+|.. -+ .++..-.|----+||.+|- +++.
T Consensus 179 l~~~a~~l~~~g~I~-----~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~-pa~~ql~~~ 252 (366)
T PRK13277 179 FYEKSEELIKAGVID-----REDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRL-PAPQQLKLN 252 (366)
T ss_pred HHHHHHhhhhcCccc-----ccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccccccccc-Chhhhhhcc
Confidence 222210000 0110 0123567899999742233335544 33 3444444422227886662 2111
Q ss_pred -cee------eeeeCC----HHHHHHHHHHHHHhcC-----eee--eEeeeeeC-CCeEEEeecCceecccchh
Q 001636 249 -EVR------YPVLLT----PNEKQMAREVCIAFRQ-----AVC--GFDLLRCE-GRSYVCDVNGWSFVKNSYK 303 (1040)
Q Consensus 249 -e~r------~~v~Lt----~~Ek~iA~k~~~afgq-----~VC--GfDLLRs~-g~s~V~DVNGwSFVK~n~k 303 (1040)
..+ .|+.++ ++=.+++.+++++++. .++ .+|..-.. +..||+|||+ .|+-+.+-
T Consensus 253 ~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp-R~gGGtnl 325 (366)
T PRK13277 253 EEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP-RIGGGTNV 325 (366)
T ss_pred cCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC-CcCCCccc
Confidence 111 223333 3445677888899883 222 35555544 7899999984 34443333
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.07 E-value=0.029 Score=65.12 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=112.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHH-----cC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001636 62 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 135 (1040)
Q Consensus 62 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~ 135 (1040)
+.|++++-+|-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++. .
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~---------~ 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHS---------V 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-cccccc---------H
Confidence 459999999999999555443332 13 4688999999999999999999999999999 333332 1
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc-cccc--cccceEEeeccCC
Q 001636 136 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 212 (1040)
Q Consensus 136 ~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l-~~~r--~~gsyIyEEFi~~ 212 (1040)
.+..+.+..-| -|.|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||||..
T Consensus 140 ~e~~~~~~~ig----~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIADEIG----YPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHhhcC----CCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 13344444333 79999999886 332442 22211 1111000 0111 1235567777765
Q ss_pred CCe--eeEEEEECCc--eEEEeeccCCCCCCeeeecCCCCceeee---eeCCHHHHHHHH----HHHHHhcCe-eeeEee
Q 001636 213 GGT--DVKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYP---VLLTPNEKQMAR----EVCIAFRQA-VCGFDL 280 (1040)
Q Consensus 213 ~G~--DVKvytVG~~--~vhAe~RKSPvvDG~vrrN~hgke~r~~---v~Lt~~Ek~iA~----k~~~afgq~-VCGfDL 280 (1040)
..+ =+.+..--.+ ++-.|.+-=| .| .|-+...+. -.||..|-++.+ ++.+++|.. =|-|+.
T Consensus 200 ~ke~e~ev~rd~~~n~ivvc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~ 272 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVVCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQF 272 (400)
T ss_pred ceEEEEEEEEeCCCCEEEEEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeE
Confidence 221 1111111111 2233444433 22 333333322 356777666554 777777765 234554
Q ss_pred eeeC--CCeEEEeec-Cce
Q 001636 281 LRCE--GRSYVCDVN-GWS 296 (1040)
Q Consensus 281 LRs~--g~s~V~DVN-GwS 296 (1040)
-=.. +..||+||| .+|
T Consensus 273 av~~~~~~~~viEvNpRvS 291 (400)
T COG0458 273 AVDPGGGELYVIEINPRVS 291 (400)
T ss_pred EEcCCCceEEEEEecCCcC
Confidence 3333 468999999 776
No 83
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=94.93 E-value=0.014 Score=62.03 Aligned_cols=164 Identities=20% Similarity=0.280 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCE-EEeeccc-cCcceEEEeccCC-CChHH
Q 001636 102 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 178 (1040)
Q Consensus 102 DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPf-VeKpv~g-edHni~IYyp~~~-GgG~~ 178 (1040)
||.-+=++++++||||+.+...... .+...+|+-.+ .|. |+|+--- ...+|.|.-.... -..++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~---------~~A~~~l~~~~----~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDY---------EEALEYLEEQG----YPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSH---------HHHHHHHHHHS----SSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCH---------HHHHHHHHhcC----CCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 4666778999999999998888762 24455665333 477 9998432 2345555432211 11222
Q ss_pred HHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEe-----eccCCCCCCeeeecCCCCceee
Q 001636 179 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 252 (1040)
Q Consensus 179 ~Lfrkign~sS~~~p~l~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe-----~RKSPvvDG~vrrN~hgke~r~ 252 (1040)
++|... .+. .+...|.|||+.-.=--+=|+|=|..|+.-- .|-. ||+-=-|+.|=+.=.
T Consensus 69 ~~~~~~------------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVDR------------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTSS------------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhcccc------------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 222210 122 4678899999975445566777788776432 2443 888888999888777
Q ss_pred eeeC-CHHH-----HHHHHHHHHHh---cCeeee---EeeeeeCCCeEEEeec
Q 001636 253 PVLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 293 (1040)
Q Consensus 253 ~v~L-t~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVN 293 (1040)
|+.. |++. +.|...+.+++ |..-+| +.|.=+.+||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 5543 23444455555 444455 5667789999999998
No 84
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=92.65 E-value=2.4 Score=46.39 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=99.5
Q ss_pred hhhHHhhHHHHHHHHHhCC--CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCC
Q 001636 96 PQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSA 173 (1040)
Q Consensus 96 ~q~~l~DR~~vlqiL~~~g--Ip~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~ 173 (1040)
.-..+-||..|-..+++.+ ..+|..+-+..+ -+.|..+ .+..+||+||..|+. .+.|+.-++.
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~------------~~~i~~~--~Lp~~fViK~nhgsg-~~~i~~dk~~ 78 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLGVYDN------------PDDIDFD--SLPDKFVIKPNHGSG-SNIIVRDKSK 78 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceeecCCC------------hhhhhhh--cCCCCEEEEEecCCC-cEEEEeCCcc
Confidence 3456789999999999886 344444443332 1223222 356799999999985 4445554443
Q ss_pred CC--hHHHHHhh-hCCCcccccCCccccc-cccceEEeeccCC-CC---eeeEEEEECCc--eEEEeeccCCCCCCeeee
Q 001636 174 GG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPVVDGVVMR 243 (1040)
Q Consensus 174 Gg--G~~~Lfrk-ign~sS~~~p~l~~~r-~~gsyIyEEFi~~-~G---~DVKvytVG~~--~vhAe~RKSPvvDG~vrr 243 (1040)
.- -+++.+++ ....-.....+- ..+ -.--.|.||||.. +| .|.|+|+.++. ++....... |.-++
T Consensus 79 ~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~----~~~~~ 153 (239)
T PF14305_consen 79 LDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF----GNHKR 153 (239)
T ss_pred cCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC----CCeEE
Confidence 21 11122222 111111122111 222 3456899999999 66 79999999985 555555432 12122
Q ss_pred c-C--------------CCCceeeeeeCCHHHHHHHHHHHHHhcCeeeeEeeeeeCCCeEEEee
Q 001636 244 N-P--------------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDV 292 (1040)
Q Consensus 244 N-~--------------hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DV 292 (1040)
+ - .+..+..|-.| ++-.++|.++|+-|. -|=||+..++|+.|+-|.
T Consensus 154 ~~yd~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGEl 214 (239)
T PF14305_consen 154 NFYDRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGEL 214 (239)
T ss_pred EEECcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEee
Confidence 1 1 11222222222 344566777777655 578999999999999887
No 85
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=91.25 E-value=0.73 Score=48.11 Aligned_cols=148 Identities=23% Similarity=0.353 Sum_probs=71.4
Q ss_pred HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc--cCcceEEEeccCCCChHHHHHhhhCCC
Q 001636 110 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG--DDHSIMIYYPSSAGGGMKELFRKVGNR 187 (1040)
Q Consensus 110 L~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g--edHni~IYyp~~~GgG~~~Lfrkign~ 187 (1040)
|++.|||+|.+..+.... +....+. .++.|+|.|+..| +.++.++-...+ -...+++.+
T Consensus 1 l~~~gip~~~~~~i~~~~---------~l~~a~~----~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE---------DLEEAAE----SIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSHH---------HHHHHHH----HHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCHH---------HHHHHHH----HcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 789999999999998731 2222222 2346999997665 333344333322 223333332
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHH
Q 001636 188 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 263 (1040)
Q Consensus 188 sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~i 263 (1040)
..+.+|.|+|++-. ..|=|.++-. ..-+.+-=|++ .-+.+|-.-..+-.|..+++ +=++|
T Consensus 62 ------------~~~~~ilE~~v~f~-~EiSvivaR~--~~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPFD-REISVIVARD--QDGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---ES-EEEEEEEEEE--TTSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCCc-EEEEEEEEEc--CCCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 47889999998732 2222222210 00011111111 01112222223445666775 34567
Q ss_pred HHHHHHHhcC-eeeeEeeeeeCCC--eEEEee
Q 001636 264 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDV 292 (1040)
Q Consensus 264 A~k~~~afgq-~VCGfDLLRs~g~--s~V~DV 292 (1040)
|.+|+.+++- -|-++.+.=+.+| -||=|+
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEi 157 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEI 157 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEec
Confidence 8888888864 4667777766444 466554
No 86
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=90.81 E-value=0.15 Score=58.90 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=39.6
Q ss_pred hhHHHhhc--cCCCCcchhhh--hhcccccceEeecCcchHHHHHHHHHhhhcccCCCCCcceeeeEecC
Q 001636 501 NEIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKD 566 (1040)
Q Consensus 501 e~LG~~fR--Yp~~~~GLLrL--hst~rhDlKIysSdEgRVq~TAaaFakglL~legeLtPilv~~V~Kd 566 (1040)
=.+|..|| |-- -+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-.
T Consensus 178 L~~G~~~r~~Y~k---~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s 240 (487)
T KOG3672|consen 178 LRLGKYFRHRYEK---TKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRAS 240 (487)
T ss_pred HhhhHHHHHHHhh---ccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecC
Confidence 36799999 631 12222 233346777999999999999999988887654 35565 35544
No 87
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=89.39 E-value=1 Score=51.46 Aligned_cols=181 Identities=21% Similarity=0.248 Sum_probs=112.1
Q ss_pred HHHHHHHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEee
Q 001636 79 AESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 157 (1040)
Q Consensus 79 ai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKp 157 (1040)
++--++..+-.+|-.-.+-++-.+|-..-++. ++.|+||-+|-|++.. .+..+..+ .|+.|-|+||
T Consensus 90 ~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~---------~e~~~a~~----~iGfPcvvKP 156 (394)
T COG0027 90 ALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL---------EELRAAVE----KIGFPCVVKP 156 (394)
T ss_pred HHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH---------HHHHHHHH----HcCCCeeccc
Confidence 33444455555555556666666664433333 3469999999999772 12333333 2347999999
Q ss_pred ccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCC--eeeEEEEECCc--eEEEeec
Q 001636 158 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGG--TDVKVYTVGPE--YAHAEAR 232 (1040)
Q Consensus 158 v~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIyEEFi~~~G--~DVKvytVG~~--~vhAe~R 232 (1040)
+-+. .|.|. .+.|+..+-.+-++--...-| ..+..|+|+||+-+- |=+-|=.+++. ||+-
T Consensus 157 vMSS-----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~P--- 221 (394)
T COG0027 157 VMSS-----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAP--- 221 (394)
T ss_pred cccc-----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCC---
Confidence 9887 78886 477776665555553222234 578899999998732 44444344444 5543
Q ss_pred cCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhc-CeeeeEeeeeeCCCeEEEee
Q 001636 233 KSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDV 292 (1040)
Q Consensus 233 KSPvvDG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afg-q~VCGfDLLRs~g~s~V~DV 292 (1040)
=|..+-+-+=-|.-+|-.+|+. -+.||.+|+.|+| .-|-||.|.=+.+.-|.-||
T Consensus 222 -----IGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEV 281 (394)
T COG0027 222 -----IGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEV 281 (394)
T ss_pred -----cccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeec
Confidence 2333333334467788889874 4568888888885 67889888655555555444
No 88
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.17 E-value=1.6 Score=50.75 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEee
Q 001636 78 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 157 (1040)
Q Consensus 78 kai~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKp 157 (1040)
.++.++... ..+-=......+++||+.==+.|++.|||+|.+..+.+.. +....+. .|+.|+|+|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~---------el~~~~~----~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAE---------ELDAAAA----DLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHH---------HHHHHHH----HcCCceEEEe
Confidence 467777766 3334456888999999999999999999999999998731 2222222 2336999999
Q ss_pred ccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC
Q 001636 158 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 237 (1040)
Q Consensus 158 v~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvv 237 (1040)
--|- | .|.|.. ..+......+... ..-..+..|.|+|++=+.+ |-|.++ | + .
T Consensus 142 r~gG-------Y---DGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~~E-iSvi~a---------R-~--~ 193 (375)
T COG0026 142 RRGG-------Y---DGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFERE-ISVIVA---------R-S--N 193 (375)
T ss_pred cccc-------c---cCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccceE-EEEEEE---------E-c--C
Confidence 9873 1 355543 3332222221111 1112333499999987543 233322 1 1 1
Q ss_pred CCeee-----ecCCCCcee-eee---eCCH----HHHHHHHHHHHHhcC-eeeeEeeeeeCCCe
Q 001636 238 DGVVM-----RNPDGKEVR-YPV---LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRS 287 (1040)
Q Consensus 238 DG~vr-----rN~hgke~r-~~v---~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~s 287 (1040)
||.+. -|.|..++= +.| .+++ +=++||.+++..++. -|-||.+-=..+|.
T Consensus 194 ~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~ 257 (375)
T COG0026 194 DGEVAFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGE 257 (375)
T ss_pred CCCEEEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCc
Confidence 45443 467765553 222 3454 455788888887764 46667776666643
No 89
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.72 E-value=0.22 Score=57.01 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=130.4
Q ss_pred HHHHHHcCCcccCCcchhhHHhhHHHHHHHHHh-------CCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCC
Q 001636 80 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEK-------YGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 152 (1040)
Q Consensus 80 i~y~~lr~p~~iNdl~~q~~l~DR~~vlqiL~~-------~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kP 152 (1040)
+.=+..-+...||++.+-+-+-||--+..-|.+ ..+|+=.-.+.-. ....+..- ..|
T Consensus 178 vig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn------------HK~m~s~~----tyP 241 (488)
T KOG3895|consen 178 VIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN------------HKEMLSQP----TYP 241 (488)
T ss_pred HHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC------------chhhccCC----CCc
Confidence 334455678889999999999999555544444 2244322222111 22333333 269
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEee
Q 001636 153 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 231 (1040)
Q Consensus 153 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~ 231 (1040)
.|+|.=.|- +|.|-. |+.|..-.-|-+. .+. .+.-.-.|-||..+ -|||+=-+|.+|-+=|+
T Consensus 242 vVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDaK-YDiriQKIG~nYKaymR 304 (488)
T KOG3895|consen 242 VVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDAK-YDIRIQKIGHNYKAYMR 304 (488)
T ss_pred EEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhcccccccc-ceeehhhhhhhHHHHhh
Confidence 999987776 787743 3433322222110 111 22333456677653 59999999999977665
Q ss_pred ccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhc-CeeeeEeeeee-CCCeEEEeecCceecccchhhHHH--
Q 001636 232 RKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKYYDD-- 307 (1040)
Q Consensus 232 RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg-q~VCGfDLLRs-~g~s~V~DVNGwSFVK~n~kYYDd-- 307 (1040)
.| +-|....|+ |-.+-+.|..|+.-|...--++..|| +.||.||.|-+ .|+-||+|||+-| +-|+-+
T Consensus 305 -ts--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ 375 (488)
T KOG3895|consen 305 -TS--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQ 375 (488)
T ss_pred -hh--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccch
Confidence 45 589998887 56666778888899988888888885 89999999999 5889999999855 445422
Q ss_pred --HHHHHHHHHHHhhCCCC
Q 001636 308 --AACVLRKMFLEAKAPHL 324 (1040)
Q Consensus 308 --cA~IL~~~~l~~~~p~~ 324 (1040)
=.+.+..+.....++.+
T Consensus 376 eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 376 EEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hHHHHHHHHHHHHHhhhcc
Confidence 22445555555555544
No 90
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=82.89 E-value=9 Score=38.45 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=51.8
Q ss_pred ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhcCeee
Q 001636 199 RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAVC 276 (1040)
Q Consensus 199 r~~gsyIyEEFi~~~G~DVKvytVG~~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~--afgq~VC 276 (1040)
..+...+..|-+. -..--|+|++.++++.+-.= .|. -+..+ .++-..-|.++.+ .-.-..|
T Consensus 33 ~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y-----~~~---------~~~~~--~~~~~~~~~~~~~~~~~~p~~~ 95 (130)
T PF14243_consen 33 DPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPY-----RGD---------WDLEP--DPDVVAFAIQALAAAWTLPPAY 95 (130)
T ss_pred CCCceEEEeceEe-eeeeEEEEEECCEEEEEeec-----CCC---------cccCC--CHHHHHHHHHHHHhcccCCCeE
Confidence 3466667776666 45678999999887665332 111 11111 3333334444444 3457889
Q ss_pred eEeeeee-CCCeEEEeec-Cce
Q 001636 277 GFDLLRC-EGRSYVCDVN-GWS 296 (1040)
Q Consensus 277 GfDLLRs-~g~s~V~DVN-GwS 296 (1040)
.+|+=++ +|+.+|+|+| ||+
T Consensus 96 vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 96 VLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEeCCCCEEEEEecCccc
Confidence 9999999 7899999999 776
No 91
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=74.57 E-value=2.2 Score=50.70 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred cch--hhHHHhhc--cCCCCcchhhhhhcc-cccceEeecCcchHHHHHHHHHhhhcccCC
Q 001636 498 NGV--NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 553 (1040)
Q Consensus 498 GGE--e~LG~~fR--Yp~~~~GLLrLhst~-rhDlKIysSdEgRVq~TAaaFakglL~leg 553 (1040)
|++ -.||+.+| |-. .|||-=+..| ..++.|+|++-.|.+|||++|..||.--.|
T Consensus 77 G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 77 GGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 555 57999999 632 3555222112 456899988888999999999999988765
No 92
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=72.00 E-value=10 Score=45.15 Aligned_cols=213 Identities=16% Similarity=0.204 Sum_probs=120.9
Q ss_pred HHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhh-HHhhHHHHHHHHH
Q 001636 33 LDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQH-LLHDRRKVYEQLE 111 (1040)
Q Consensus 33 L~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~-~l~DR~~vlqiL~ 111 (1040)
|.++.....+|++|-|-+.-|-.. +...++.++..+.--...=+ +=+++--+=++++
T Consensus 55 lv~fA~~~~idl~vVGPE~pL~~G----------------------vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 55 LVAFAKEKNVDLVVVGPEAPLVAG----------------------VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHcCCCEEEECCcHHHhhh----------------------hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 344444455666666655544442 44445554444433332222 3345666778899
Q ss_pred hCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccc
Q 001636 112 KYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 191 (1040)
Q Consensus 112 ~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~ 191 (1040)
++|||++.+-..+. ..+...+|.--| .|+|+||.-=. .|.||. ....+..+..-.
T Consensus 113 k~~IPta~y~~f~~---------~e~a~ayi~~~g----~piVVKadGLa-----------aGKGV~-V~~~~eeA~~a~ 167 (428)
T COG0151 113 KYGIPTAEYEVFTD---------PEEAKAYIDEKG----APIVVKADGLA-----------AGKGVI-VAMTLEEAEAAV 167 (428)
T ss_pred HcCCCcccccccCC---------HHHHHHHHHHcC----CCEEEeccccc-----------CCCCeE-EcCCHHHHHHHH
Confidence 99999999887774 224667775333 69999993323 566764 333221111111
Q ss_pred cCCc--cccc-cccceEEeeccCCCCeeeEEEEECCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHHH---
Q 001636 192 HPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK--- 261 (1040)
Q Consensus 192 ~p~l--~~~r-~~gsyIyEEFi~~~G~DVKvytVG~~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~Ek--- 261 (1040)
+.=+ +.+. .....+.|||+.-.=--+=|+|=|.+++- |---| -+.||+-=-|+-|=+.=.|+. +|++.-
T Consensus 168 ~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhK-ra~dgD~GPNTGGMGaysp~P~~t~e~~~~~ 246 (428)
T COG0151 168 DEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHK-RAYDGDTGPNTGGMGAYSPAPFITDEVVERA 246 (428)
T ss_pred HHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccc-cccCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 1000 0121 12568999999865566677777776542 11111 135888888998877666553 455533
Q ss_pred --HHHHHHHHHhcC---eeeeE---eeeeeCCCeEEEeec
Q 001636 262 --QMAREVCIAFRQ---AVCGF---DLLRCEGRSYVCDVN 293 (1040)
Q Consensus 262 --~iA~k~~~afgq---~VCGf---DLLRs~g~s~V~DVN 293 (1040)
+|-..+.++|.. .-+|| =|.=+..||+|+|-|
T Consensus 247 ~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 247 VEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 334455555554 46666 233456789999999
No 93
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=70.77 E-value=1.4 Score=48.33 Aligned_cols=54 Identities=22% Similarity=0.588 Sum_probs=27.8
Q ss_pred CEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----CC--eeeEEEEEC
Q 001636 152 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVG 223 (1040)
Q Consensus 152 PfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~----~G--~DVKvytVG 223 (1040)
-+|.||-.|. +|.|. +|++.. +.+.. . .....+.||+|+||.. +| -|||+||+=
T Consensus 67 ~wI~KP~~~~-----------rG~GI-~l~~~~----~~i~~-~-~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGI-KLFNNL----EQILR-F-SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp -EEEEES------------------E-EEES-H----HHHHC-C-HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred EEEEeccccC-----------CCCCc-eecCCH----HHHHH-H-hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 5899998887 77776 366543 11110 0 1236899999999974 77 899999873
No 94
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=69.34 E-value=4.3 Score=39.10 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEeecCcchHHHHHHHHHhhhc
Q 001636 525 HDLKIYSSDEGRVQMSAAAFAKGLL 549 (1040)
Q Consensus 525 hDlKIysSdEgRVq~TAaaFakglL 549 (1040)
.-..||||+-.||+.||++|++++.
T Consensus 47 ~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 47 KFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCEEEECChHHHHHHHHHHHHHhc
Confidence 3457999999999999999999985
No 95
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=68.35 E-value=5.1 Score=47.22 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=38.6
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCcchHHHHHHHHHhhhcccCCC
Q 001636 501 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 554 (1040)
Q Consensus 501 e~LG~~fR--Yp~~~~GLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~lege 554 (1040)
-+||+.+| |=..+. +| -..=-+.++.|+|||=-|+.|||++..+||+.-++.
T Consensus 80 ~~LG~~LR~rYvr~~~-fL-~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 80 FELGRFLRKRYVRYGN-FL-SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHhhccc-cC-CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 47999998 421111 22 112227899999999999999999999999998754
No 96
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=66.84 E-value=11 Score=44.49 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=47.8
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CCe--eeEEEEECCc
Q 001636 152 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 225 (1040)
Q Consensus 152 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~---~G~--DVKvytVG~~ 225 (1040)
.+|.||+-| |.-||-|+-+ |+. +.+.-|+ |. +..+|||+|.+- +|. =|=+|+||+.
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g~----y~--------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDGN----YA--------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCCC----CC--------CCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8888888853 232 2222221 33 677899999975 553 4788999999
Q ss_pred eEEEeeccC
Q 001636 226 YAHAEARKS 234 (1040)
Q Consensus 226 ~vhAe~RKS 234 (1040)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 97
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=66.11 E-value=3.9 Score=48.15 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=25.6
Q ss_pred cccccceEEEEecCCCCCCCCCeeEEEEEecCCCCCCCC
Q 001636 914 DYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPL 952 (1040)
Q Consensus 914 dYLSqIvf~LYE~~~~~~~~~~rf~Iei~~SpG~~~~pl 952 (1040)
.|-+.|.||+|++.+ ..+.|+|.+.-..+..|+
T Consensus 317 ~yas~i~iEl~~~~~------~~~~vk~~yr~~~~~~~~ 349 (411)
T KOG3720|consen 317 PYASAIAIELHRNKG------GKPYVKLLYRNDEHSEPV 349 (411)
T ss_pred chHHHhHhhheecCC------CCEEEEEEEecCCCCCce
Confidence 588999999999985 667888888766654443
No 98
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=65.79 E-value=4.9 Score=45.95 Aligned_cols=152 Identities=24% Similarity=0.339 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh
Q 001636 104 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 183 (1040)
Q Consensus 104 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk 183 (1040)
=.-|.+-.+.|+|.|+|..++.. +...+-.+.-|.|.||-.| ||+-...|+
T Consensus 116 PllY~ra~elgl~~P~Ty~v~S~---------------~d~~~~el~FPvILKP~mg--------------g~~~~~ara 166 (415)
T COG3919 116 PLLYNRAEELGLPYPKTYLVNSE---------------IDTLVDELTFPVILKPGMG--------------GSVHFEARA 166 (415)
T ss_pred cHHHHHHHHhCCCCcceEEecch---------------hhhhhhheeeeEEecCCCC--------------Ccceeehhh
Confidence 34578888999999999999872 1112222346999999654 233222332
Q ss_pred hCCCcc---cccCCcc-ccc--cccceEEeeccCCCCeeeEEEE----ECCce---EEEeeccCCCCCCeeeecCCCCce
Q 001636 184 VGNRSS---EFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYT----VGPEY---AHAEARKSPVVDGVVMRNPDGKEV 250 (1040)
Q Consensus 184 ign~sS---~~~p~l~-~~r--~~gsyIyEEFi~~~G~DVKvyt----VG~~~---vhAe~RKSPvvDG~vrrN~hgke~ 250 (1040)
.--.-+ ++..-++ +.. ---+.|+||||+-+|+.-++|. -|-.+ .+--+|+=||--| -.
T Consensus 167 Ka~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdfg---------yt 237 (415)
T COG3919 167 KAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDFG---------YT 237 (415)
T ss_pred heeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCcccc---------cc
Confidence 211000 0000000 011 1236799999999999888764 23333 2333566663322 23
Q ss_pred eeeeeCCH--HHHHHHHHHHHHhcC-eeeeEeeeee-CCCeE-EEeec
Q 001636 251 RYPVLLTP--NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSY-VCDVN 293 (1040)
Q Consensus 251 r~~v~Lt~--~Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~-V~DVN 293 (1040)
.+.|++-. +--+-|+++-...+- ...-||+=+. .+||| ++|||
T Consensus 238 st~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 238 STVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 34555554 223335555544443 3566888887 45665 89999
No 99
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=63.74 E-value=4.8 Score=47.99 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=37.3
Q ss_pred eeEEEeecchhHHHHHHHHHhc-CCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCee-EEEEE
Q 001636 865 RTRLYFTSESHIHSLMNVLRYC-NLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRF-RIELT 942 (1040)
Q Consensus 865 RTrlYFTsESHIhSLLNvlr~g-~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~LYE~~~~~~~~~~rf-~Iei~ 942 (1040)
|-.+|.--.|.|-+|++.|..- .|+... ..+| +=+-+|||+|++.+ +.++| +|++.
T Consensus 322 kl~~lvGHDTNIA~l~~~L~~~w~lp~q~---------------~~tP---pGg~LvFErw~d~~----~~~~~vrv~~~ 379 (436)
T PRK10172 322 SVLFIAGHDTNLANLGGALELNWTLPGQP---------------DNTP---PGGELVFERWRRLS----DNSQWIQVSLV 379 (436)
T ss_pred eEEEEEecchhHHHHHHHhCCCccCCCCC---------------CCCC---CcceEEEEEEeeCC----CCceEEEEEEE
Confidence 6789999999999999999641 122211 1122 24889999999863 34554 77743
No 100
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=53.17 E-value=15 Score=32.71 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.7
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCe
Q 001636 241 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 274 (1040)
Q Consensus 241 vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~ 274 (1040)
|+.+...-+..+|..||++||.+.-.+|.-||+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5656668999999999999999999999999986
No 101
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=51.45 E-value=30 Score=43.26 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=51.5
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CC--eeeEEEEECCc
Q 001636 152 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 225 (1040)
Q Consensus 152 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~---~G--~DVKvytVG~~ 225 (1040)
.+|.||+-| |.-||-|+-+. |. .+.+.-|. |. +..+|||+|.+- +| .=|=+++||+.
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g~----y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSGK----FA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCCC----CC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 88889888542 22 12222222 44 567899999975 33 55778999999
Q ss_pred eEEEeeccCCCCCCeeeec
Q 001636 226 YAHAEARKSPVVDGVVMRN 244 (1040)
Q Consensus 226 ~vhAe~RKSPvvDG~vrrN 244 (1040)
+|..--|.+ ++.+-.|
T Consensus 592 ~aG~giRed---~~~IT~~ 607 (619)
T PRK10507 592 YGGTCLRGD---PSLVIKK 607 (619)
T ss_pred EEEEEEecC---CccccCC
Confidence 999999988 3444333
No 102
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=47.72 E-value=15 Score=35.52 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 103
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=45.58 E-value=14 Score=43.69 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=40.3
Q ss_pred cch--hhHHHhhc-cCCCCcchhhhhhc-ccccceEeecCcchHHHHHHHHHhhhcccCC
Q 001636 498 NGV--NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 553 (1040)
Q Consensus 498 GGE--e~LG~~fR-Yp~~~~GLLrLhst-~rhDlKIysSdEgRVq~TAaaFakglL~leg 553 (1040)
|++ ..+|+.+| |. ...|||--+-- --.++.+||++--|.+.||+||+.||.--.+
T Consensus 75 G~~~~~~~G~~~r~~~-~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 75 GGVLEVYMGHYMREWL-AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 666 67999999 32 24466532110 1247999999999999999999999987654
No 104
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=40.71 E-value=19 Score=36.27 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 599999999999999998753
No 105
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=40.13 E-value=21 Score=34.93 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||.-.|++.||+++++++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 699999999999999999987
No 106
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=37.21 E-value=9.8 Score=40.95 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeecc
Q 001636 105 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 159 (1040)
Q Consensus 105 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv~ 159 (1040)
.+-++|.++|||+|+..++..+ + +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4678999999999999999883 1 3333332 565 689999954
No 107
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=34.56 E-value=20 Score=41.54 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeec
Q 001636 104 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPV 158 (1040)
Q Consensus 104 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~-v~G~~~~kPfVeKpv 158 (1040)
..+.++|++.|||+|.+.++... . +....+. +++ .|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~--~-------ea~~~~~~ig~----~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV--E-------EAEEIAAKLGA----GPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH--H-------HHHHHHHHhCC----CcEEEEec
Confidence 35789999999999999988552 1 1112221 331 59999997
No 108
>PRK03482 phosphoglycerate mutase; Provisional
Probab=33.39 E-value=31 Score=36.34 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.5
Q ss_pred eEeecCcchHHHHHHHHHhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKG 547 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakg 547 (1040)
.||||.-.|++-||+++++.
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 69999999999999999865
No 109
>PRK13463 phosphatase PhoE; Provisional
Probab=32.73 E-value=31 Score=36.27 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCcchHHHHHHHHHhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKG 547 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakg 547 (1040)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999763
No 110
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=32.14 E-value=35 Score=40.52 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.1
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcc-cccccchhhhhhhhhhhcCCCCCcccccceEEEEecC
Q 001636 865 RTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 927 (1040)
Q Consensus 865 RTrlYFTsESHIhSLLNvlr~g~l~~-~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~LYE~~ 927 (1040)
|-.+||.-.|.|.+|++.|- +.. .+- .....--|=+.|+||+|.+.
T Consensus 304 Kl~lysgHDtnIa~ll~ALg---l~~~~lP--------------~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 304 KVTVLVGHDSNIASLLTALD---FKPYQLH--------------DQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred CEEEEEEccccHHHHHHHhC---CCccccC--------------CCCCcCCccceEEEEEEEeC
Confidence 56899999999999999983 321 110 01134568899999999976
No 111
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=30.59 E-value=35 Score=35.48 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.2
Q ss_pred ceEeecCcchHHHHHHHHHhhhc
Q 001636 527 LKIYSSDEGRVQMSAAAFAKGLL 549 (1040)
Q Consensus 527 lKIysSdEgRVq~TAaaFakglL 549 (1040)
-.||||+-.|++.||++.|+.+-
T Consensus 52 ~~i~sS~l~Ra~~TA~~~a~~~~ 74 (208)
T COG0406 52 DAIYSSPLKRAQQTAEPLAEELG 74 (208)
T ss_pred CEEEECchHHHHHHHHHHHHhcC
Confidence 34899999999999999998764
No 112
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=29.79 E-value=39 Score=33.38 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||.-.|++-||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 113
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=28.13 E-value=42 Score=36.46 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999766
No 114
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=27.61 E-value=41 Score=35.09 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred eEeecCcchHHHHHHHHHhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKG 547 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakg 547 (1040)
+||||.-.|++-||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 115
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=27.20 E-value=43 Score=34.98 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999999865
No 116
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=26.97 E-value=23 Score=41.15 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeec
Q 001636 104 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPV 158 (1040)
Q Consensus 104 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv 158 (1040)
..+.++|+++|||+|.+.++... + +..... +++ +.|+|+||.
T Consensus 6 ~~ak~lL~~~gIpvp~~~~~~~~--~-------ea~~~a~~i~----g~PvVvK~~ 48 (388)
T PRK00696 6 YQAKELFAKYGVPVPRGIVATTP--E-------EAVEAAEELG----GGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHcCCCCCCCeeeCCH--H-------HHHHHHHHcC----CCcEEEEEe
Confidence 45678999999999999988762 1 111222 132 369999996
No 117
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=26.40 E-value=50 Score=33.54 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||.=.|++-||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 118
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=24.84 E-value=1.5e+02 Score=38.48 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=115.8
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001636 88 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 167 (1040)
Q Consensus 88 p~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~I 167 (1040)
.|+==.++....+=|+-++-.+-.++|||+= -..++|... ..+.....+ ..+.|+++|-.-|-
T Consensus 107 ~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvi----pgt~~~~~~---~ee~~~fa~----~~gyPvmiKA~~GG------ 169 (1149)
T COG1038 107 TFIGPKPEVLDMLGDKVKARNAAIKAGVPVI----PGTDGPIET---IEEALEFAE----EYGYPVMIKAAAGG------ 169 (1149)
T ss_pred EEeCCCHHHHHHhccHHHHHHHHHHcCCCcc----CCCCCCccc---HHHHHHHHH----hcCCcEEEEEccCC------
Confidence 4555567888889999988888889999952 222332210 112222222 23479999998875
Q ss_pred EeccCCCChHH------HHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECC---ceEEEeeccCCCCC
Q 001636 168 YYPSSAGGGMK------ELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVD 238 (1040)
Q Consensus 168 Yyp~~~GgG~~------~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVG~---~~vhAe~RKSPvvD 238 (1040)
-|.|+| .|.+..-.++|+=.+ ++..+.-| +|.|+. +-.-|-|=+.|. +++|--.|-+-|
T Consensus 170 -----GGRGMR~vr~~~~l~~~~~~AksEAka---AFG~~eVy-vEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSv-- 237 (1149)
T COG1038 170 -----GGRGMRVVRSEADLAEAFERAKSEAKA---AFGNDEVY-VEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSV-- 237 (1149)
T ss_pred -----CccceeeecCHHHHHHHHHHHHHHHHH---hcCCCcEE-hhhhhc-CcceeEEEEeecCCCCEEEEeecccch--
Confidence 344542 123333334444432 34433333 366664 445666666764 689999998853
Q ss_pred CeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhcCeeee-Eeeeee-CCCeEEEeecCceecc
Q 001636 239 GVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 299 (1040)
Q Consensus 239 G~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~g~s~V~DVNGwSFVK 299 (1040)
=|||--==|++-.+-|+++-++ -|.|+|+..|-.=+| |..|=. .|.-|.||||=-=-|-
T Consensus 238 --QRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 238 --QRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred --hhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeE
Confidence 3676666688888999997764 579999999987777 566665 5699999999654443
No 119
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.56 E-value=48 Score=33.41 Aligned_cols=72 Identities=11% Similarity=0.230 Sum_probs=50.4
Q ss_pred eeEEEEEecccccccCCcccChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHH
Q 001636 6 KITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATL 85 (1040)
Q Consensus 6 ~i~iGVCAM~~Ka~~~~~~~SkPm~~IL~rL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~l 85 (1040)
--.||+|+|+--. ... |+.++.+|.+.+--++.|+-.=.+.+++.+.|=...+ =.||+.|-|+...++++..
T Consensus 54 adii~iSsl~~~~------~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGVSSLAGGH------LTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCEEEEcCchhhh------HHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHHH
Confidence 3479999999765 333 8999999988764466555554455666666654443 4678999999888888765
No 120
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=24.18 E-value=35 Score=40.20 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeecc
Q 001636 105 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVH 159 (1040)
Q Consensus 105 ~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~ 159 (1040)
.+.++|++.|||+|++.++... . +..... ++++ +|+|+|...
T Consensus 7 eak~lL~~yGIpvp~~~~~~~~--~-------ea~~~a~~lg~----p~~VvK~qv 49 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYSP--E-------QAVYRARELGG----WHWVVKAQI 49 (392)
T ss_pred HHHHHHHHcCCCCCCceEECCH--H-------HHHHHHHHcCC----CcEEEEeee
Confidence 4678999999999999998763 1 122222 2454 467999854
No 121
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=23.19 E-value=23 Score=38.60 Aligned_cols=97 Identities=31% Similarity=0.494 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeecccc-Cc-----ceEEEeccCCCC
Q 001636 103 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGD-DH-----SIMIYYPSSAGG 175 (1040)
Q Consensus 103 R~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~G~~~~kPfVeKpv~ge-dH-----ni~IYyp~~~Gg 175 (1040)
-..++++|+..|||+|.+.++.... +..... .++ .|+|.|.++-. -| .|.+-..+. .
T Consensus 12 e~e~~~lL~~yGI~~~~~~~~~~~~---------ea~~~a~~ig-----~PvvlKi~sp~i~HKsd~GgV~L~l~~~--~ 75 (222)
T PF13549_consen 12 EAEAKELLAAYGIPVPPTRLVTSAE---------EAVAAAEEIG-----FPVVLKIVSPDIAHKSDVGGVRLNLNSP--E 75 (222)
T ss_dssp HHHHHHHHHTTT------EEESSHH---------HHHHHHHHH------SSEEEEEE-TT---HHHHT-EEEEE-SH--H
T ss_pred HHHHHHHHHHcCcCCCCeeEeCCHH---------HHHHHHHHhC-----CCEEEEEecCCCCcCCCCCcEEECCCCH--H
Confidence 3679999999999999999988731 111111 133 59999999864 11 111111111 1
Q ss_pred hHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001636 176 GMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 219 (1040)
Q Consensus 176 G~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKv 219 (1040)
.++.-|+.+-++-..+.|+. .-..+++|+-.+..|..+-+
T Consensus 76 ~v~~a~~~l~~~~~~~~p~~----~~~gvlVq~m~~~~g~El~v 115 (222)
T PF13549_consen 76 EVREAFERLRERVAAHHPGA----RIDGVLVQEMAPSGGRELIV 115 (222)
T ss_dssp HHHHHHHHHHHHHHHH-TT--------EEEEEE------EEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCC----ccceEEEEEcccCCcEEEEE
Confidence 23444554433333333311 13457888887655655543
No 122
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=37 Score=39.00 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=44.0
Q ss_pred CCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccc--cceEEeeccCCCCeeeEEEEECCceE
Q 001636 150 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGTDVKVYTVGPEYA 227 (1040)
Q Consensus 150 ~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~--gsyIyEEFi~~~G~DVKvytVG~~~v 227 (1040)
+.|+|.||+.|+ +|.|.+...+.+-+..-.-.+....++.+ -+.+.|+|. .|.|-++||.+.+..
T Consensus 87 giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~g 153 (317)
T COG1181 87 GIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREG 153 (317)
T ss_pred CCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCcc
Confidence 379999999998 89887644443323322222221122222 333444433 588899999999988
Q ss_pred EEeeccC
Q 001636 228 HAEARKS 234 (1040)
Q Consensus 228 hAe~RKS 234 (1040)
.+--|.-
T Consensus 154 SSvg~~~ 160 (317)
T COG1181 154 SSVGRSP 160 (317)
T ss_pred ceeeEEE
Confidence 7766643
No 123
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=22.41 E-value=29 Score=41.40 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEc--ceecCCCEEEeec
Q 001636 104 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVH--GNRFWKPFVEKPV 158 (1040)
Q Consensus 104 ~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i-~v~--G~~~~kPfVeKpv 158 (1040)
..+.++|++.|||+|+..++... + |..... +++ | .|+|.|..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t~--e-------ea~~aa~~l~~~~----~pvVvKaq 77 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASSL--D-------EVKKALEKMFPDE----GEVVVKSQ 77 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH--H-------HHHHHHHHhcccC----CcEEEEEE
Confidence 45789999999999999988772 1 111111 132 3 59999998
No 124
>PRK01295 phosphoglyceromutase; Provisional
Probab=22.16 E-value=66 Score=34.20 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||+=.|++-||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 125
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=21.74 E-value=67 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred eEeecCcchHHHHHHHHHhhh
Q 001636 528 KIYSSDEGRVQMSAAAFAKGL 548 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakgl 548 (1040)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 699999999999999998654
No 126
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=20.79 E-value=87 Score=38.59 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=110.9
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEE
Q 001636 89 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 168 (1040)
Q Consensus 89 ~~iNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~r~~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IY 168 (1040)
|.==+..+...+=|+-.+-||.+++|||+=.- .++ ...+++...-.-..|+.|+.+|+.-|-
T Consensus 98 FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g-------~~qs~e~~~~~a~eIgyPvMiKa~~GG------- 159 (670)
T KOG0238|consen 98 FIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHG-------EDQSDEEAKKVAREIGYPVMIKATAGG------- 159 (670)
T ss_pred EECCCHHHHHHhcchHHHHHHHHhcCCccccC----ccc-------ccccHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 44445677888889999999999999995221 111 111222221112346689999999886
Q ss_pred eccCCCChHHHHHhhhCCCcccccCCc----cccccccceEEeeccCC-CCeeeEEEEE-CCceEEEeeccCCCCCCeee
Q 001636 169 YPSSAGGGMKELFRKVGNRSSEFHPDV----RRVRREGSYIYEEFMPT-GGTDVKVYTV-GPEYAHAEARKSPVVDGVVM 242 (1040)
Q Consensus 169 yp~~~GgG~~~Lfrkign~sS~~~p~l----~~~r~~gsyIyEEFi~~-~G~DVKvytV-G~~~vhAe~RKSPvvDG~vr 242 (1040)
-|.|. |++.+-+.-.-.|...- ..+ -+...+.|.||.. .--.|.||-= -++++|--.|-+- .=|
T Consensus 160 ----GGkGM-ria~~~~ef~~~~~~ak~Ea~~sF-Gdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCS----vQR 229 (670)
T KOG0238|consen 160 ----GGKGM-RIAWSEEEFEEGLESAKQEAAKSF-GDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCS----VQR 229 (670)
T ss_pred ----CCcce-EeecChHHHHHHHHHHHHHHHhhc-CcchhhHHHhccCCceEEEEEEecCCCcEEEecccccc----hhh
Confidence 34455 35443221111111000 011 2445688999987 5555555432 1456777778774 336
Q ss_pred ecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCeeee-Ee-eeeeCCCeEEEeecCceecc
Q 001636 243 RNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FD-LLRCEGRSYVCDVNGWSFVK 299 (1040)
Q Consensus 243 rN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq~VCG-fD-LLRs~g~s~V~DVNGwSFVK 299 (1040)
||--==|.+-.-.|+++=+ +-|.++|+|.|-.=+| |. |+-+.+..|.+|+|--=-|-
T Consensus 230 RnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVE 292 (670)
T KOG0238|consen 230 RNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVE 292 (670)
T ss_pred hhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeec
Confidence 7665556665566766544 5689999999987777 33 44568899999999654443
No 127
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=20.68 E-value=78 Score=36.00 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEeecCcchHHHHHHHHHhhhc
Q 001636 528 KIYSSDEGRVQMSAAAFAKGLL 549 (1040)
Q Consensus 528 KIysSdEgRVq~TAaaFakglL 549 (1040)
.||||+=.|++.||++++.++.
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999987763
Done!