RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001636
(1040 letters)
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 512 bits (1320), Expect = e-175
Identities = 186/334 (55%), Positives = 244/334 (73%), Gaps = 9/334 (2%)
Query: 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICD 64
++I +G+C M KK K S PM +IL+R+ F V+ F ++VIL +P+E WP+CD
Sbjct: 6 RQIVVGICSMAKKSK------SKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCD 59
Query: 65 CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 124
CLI+F+S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++N
Sbjct: 60 CLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILN 119
Query: 125 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 184
R+ + IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+
Sbjct: 120 RDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKI 179
Query: 185 GNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRN 244
G+RSS + P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+
Sbjct: 180 GSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERD 238
Query: 245 PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKY 304
+GKEVRYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KY
Sbjct: 239 SEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKY 298
Query: 305 YDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNE 338
YDD A +L + + AP IP +P + +
Sbjct: 299 YDDCAKILGNIVMRELAPQFH--IPWSIPLEAED 330
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 117 bits (293), Expect = 1e-28
Identities = 49/360 (13%), Positives = 95/360 (26%), Gaps = 92/360 (25%)
Query: 1 MEVHKKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKW 60
M + +++ + + E K K + D V L +
Sbjct: 6 MTTKQTVSLFIWLPESKQKT----------LFISTKNHTQFELNNIIFD-VTLSTELPDK 54
Query: 61 PICDCLIAF-YSSGYPLEKAESYATLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIPVP 118
+ + G ++ Y L E ++ R ++ L K IP+P
Sbjct: 55 EPNAIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIP 114
Query: 119 RYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD----DHSIMIYYPSSAG 174
V + E ++ PF+ KP + H + I
Sbjct: 115 NSFSVKSKE---------EVIQLLQSKQLIL--PFIVKPENAQGTFNAHQMKIVLEQE-- 161
Query: 175 GGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 234
G+ ++ + + ++ VKV+ +G
Sbjct: 162 -GIDDI--------------------HFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSL 200
Query: 235 PVVDGVVMRNPD-----------------------------------GKEVRYPVLLTPN 259
P V +++ D + +
Sbjct: 201 PNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAE 260
Query: 260 EKQMAREVCIAFRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFL 317
+ +A +V A +CG D ++ G V DVN + SY D + K+ L
Sbjct: 261 MRDLAYKVRCALGVQLCGIDFIKENEQGNPLVVDVNVFP----SYGGKVDFDWFVEKVAL 316
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 99.4 bits (247), Expect = 2e-22
Identities = 49/350 (14%), Positives = 100/350 (28%), Gaps = 73/350 (20%)
Query: 5 KKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFG-EFEVIHFGD--------KVILED 55
K +G + EKK+K + + G E ++ VI+
Sbjct: 17 KGKRVGYWLSEKKIK------KLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHK 70
Query: 56 PIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYG 114
+ D S + + + Y +V + L L DR K YE + K
Sbjct: 71 LTDVILEAD--QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIE 128
Query: 115 IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD---HSIMIYYPS 171
+ + + P+ EL ++ + N PF+ K H + I +
Sbjct: 129 AYMEDDRICSP--PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQ 186
Query: 172 SAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 231
G+ + + + + F+ KV+ VG Y +
Sbjct: 187 E---GLNAI--------------------QPPCVVQNFINHNAVLYKVFVVGESYTVVQR 223
Query: 232 RKSPVVDGVVMRN-------------------PDGKEVRYPVLLTPNE--KQMAREVCIA 270
+ ++ +E ++++R + A
Sbjct: 224 PSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQA 283
Query: 271 FRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 318
++ G D++ G+ V D+N + Y+ + L
Sbjct: 284 LGVSLFGIDIIINNQTGQHAVIDINAFP----GYEGVSEFFTDLLNHIAT 329
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 69.0 bits (169), Expect = 1e-12
Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 38/270 (14%)
Query: 31 QILDRLQAFG-EFEVIHFGD-KVILEDPIEKWPICDCLI----AFYSSGYPLEKAESYAT 84
+ +R +A G ++ ++ ++L + ++ + + +
Sbjct: 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALGI 74
Query: 85 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEV 144
+VN E D+ L K G+P P+ AL E +E
Sbjct: 75 ----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDRE---------EALRLMEA 121
Query: 145 HGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY 204
G P V KPV G S G + +V + +
Sbjct: 122 FG----YPVVLKPVIG-----------SWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLF 166
Query: 205 IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 264
+E++ G D++V+ VG A R+S R G+ P LT +++
Sbjct: 167 YIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTARG--GQAENCP--LTEEVARLS 222
Query: 265 REVCIAFRQAVCGFDLLRCEGRSYVCDVNG 294
+ A V DL E V +VN
Sbjct: 223 VKAAEAVGGGVVAVDLFESERGLLVNEVNH 252
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 99/672 (14%), Positives = 199/672 (29%), Gaps = 188/672 (27%)
Query: 434 DSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQD-------VLLSIQC-HLL-LANLVSG 484
D E + ++ K I+ F F+ +D +L + H++ + VSG
Sbjct: 8 DFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 485 QFIDFLIEQFYQDNGVN-------EIAYWWGSHSEGTGLL-RLHSTYRH---DLKIYSSD 533
F Q+ V I Y + L+ + + R ++Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKF--------LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 534 EGRVQMSAAAFAKGL---LDLEGQLTPILVSLVSKDSSMLDGLDNA--SIEMEEAKARLN 588
R+ FAK L +L L+ L + ++DG+ + + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSY 174
Query: 589 EIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDL 648
++ I W+ + + +L L KL ++ + D
Sbjct: 175 KVQCKMDFKIF--------WL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DH 219
Query: 649 AETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLER------DLY 702
+ +A L + + E ++
Sbjct: 220 SSNIKL----RIHSIQA---------------------ELRRLLKSKPYENCLLVLLNVQ 254
Query: 703 NERK-ERFDI-------TQIPDVYDSCKYDLLHNAHLNLEGLDELF---KVAQLLAD--G 749
N + F++ T+ V D H++L+ +V LL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 750 VIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTRE--EAISVAELKSSQDQVSKSTKT 807
P + P++ L + ++ + + D T + + ++ +L + + S +
Sbjct: 313 CRPQDL---PREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLE 367
Query: 808 EKEDKDYPPKLFIKADDTRRSSTT------SDISMDQDDDDDKETQYRL---DPKYANVK 858
E + +L + + I D +K +Y L PK + +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 859 TPERHVRTRLYFTSESHIHSLM----NVLR-YCNLDESLQGEDSLVCHSALERLYKTKEL 913
P ++ ++ +E +H + N+ + + + D D Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----------Y----- 472
Query: 914 DYMSYIV--LRMFENTAVALEDPKRFRIELTFSRGADLSPLE---KNDSEASSLHQEHTL 968
+ S+I L+ E+ E FR+ D LE ++DS A
Sbjct: 473 -FYSHIGHHLKNIEHP----ERMTLFRMVFL-----DFRFLEQKIRHDSTA--------- 513
Query: 969 PIMGPERLQEVGSYL-TLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASVLERLVN 1027
GS L TL++++ + Y + ERLVN
Sbjct: 514 -------WNASGSILNTLQQLKF--------------------YKPYICDNDPKYERLVN 546
Query: 1028 -LWPFHKNANSN 1038
+ F N
Sbjct: 547 AILDFLPKIEEN 558
Score = 64.1 bits (155), Expect = 2e-10
Identities = 116/736 (15%), Positives = 208/736 (28%), Gaps = 262/736 (35%)
Query: 297 FVKNSYKY-YDDAACVLRKMF---LEAKAPHLSSAIPPILPWK-----VNEPVQPTEG-- 345
F ++Y Y D V F + K + IL + + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 346 ------LTRQGSGLGTFGQSEELRC----VIAVMRHGDRTPKQKVKLKVTE-EKLLN--- 391
L++Q + F E LR +++ ++ R P ++ + + ++L N
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 392 LMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVA 451
+ KYN R + KL+ A L +L A +
Sbjct: 125 VFAKYNVSRLQPYLKLRQA--LLELRPAKNV----------------------------- 153
Query: 452 ILH-LGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSH 510
++ + G K +A V + ++ D + +W
Sbjct: 154 LIDGVLG-SGK-----------TW---VALDVCL---SYKVQCKM-DFKI----FWL--- 187
Query: 511 SEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML 570
+LK +S E ++M L L Q+ P S
Sbjct: 188 ---------------NLKNCNSPETVLEM--------LQKLLYQIDPNWTSR-------S 217
Query: 571 DGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELL------- 623
D N + + +A L ++KS P + LL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKS----------------------KPYENCLLVLLNVQN 255
Query: 624 PKLVK---------LT---KKVTEQV--------------RQLAKDEDEDL----AETNP 653
K LT K+VT+ + L DE + L + P
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 654 YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQ 713
D +P + + + IA + L + W+ + D E
Sbjct: 316 QD-LPR--EVLTTNPRRLSI--IAESI----RDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 714 IPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKI-------- 765
P Y +D L V P I P L +
Sbjct: 367 EPAEYRKM-FDRL----------------------SVFPPSAHI-PTILLSLIWFDVIKS 402
Query: 766 -GSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADD 824
+ +L L++ + +E IS+ + K + E++ + + +
Sbjct: 403 DVMVVVNKLHKYSLVE-KQPKESTISIPSI-------YLELKVKLENEYALHRSIVDHYN 454
Query: 825 TRRSSTTSDISMDQDDD---------------DDKETQYR---LDPKYANVKTPERHVRT 866
++ + D+ D ++ T +R LD ++ K RH T
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDST 512
Query: 867 RLYFTSESHIHSLMNVLRY--------CNLDESLQG--EDSLVCHSALERLYKTKELDYM 916
+ I + + L++ E L D L E L +K D +
Sbjct: 513 AW--NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDLL 568
Query: 917 SYIVLRMFENTAVALE 932
I L M E+ A+ E
Sbjct: 569 R-IAL-MAEDEAIFEE 582
Score = 36.0 bits (82), Expect = 0.087
Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 40/166 (24%)
Query: 2 EVHKKITIGVCVMEKKVKCGSEVFSAPMGQILDRLQAFGEFEVIHFGDKVILE--DPIEK 59
++HK ++EK+ K S P + +++ E+ +H + I++ + +
Sbjct: 410 KLHKY-----SLVEKQPK--ESTISIPSIYLELKVKLENEYA-LH---RSIVDHYNIPKT 458
Query: 60 WPICDCLIA-----FYSS-GYPL---EKAESYATLRKPFL-VNELEPQHLLHDRRK---- 105
+ D + FYS G+ L E E R FL LE Q + HD
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNAS 517
Query: 106 -----VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHG 146
+QL+ Y Y N + ++ + DF+
Sbjct: 518 GSILNTLQQLKFYK----PYICDNDPKYERLVNAIL---DFLPKIE 556
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 1e-09
Identities = 96/544 (17%), Positives = 180/544 (33%), Gaps = 171/544 (31%)
Query: 308 AACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIA 367
A L++ F P P +EP P E + + F L V +
Sbjct: 29 IASQLQEQFN-KILPE-----PTEGFAADDEPTTPAELVGK-------F-----LGYVSS 70
Query: 368 VMRHGDRTPKQKVKLKVT----EEKLLN------LMLKYNGGRPRAETKLKSAVQLQDLL 417
++ +V L + E L L K K K +++ +
Sbjct: 71 LVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYI 127
Query: 418 DATRILVPRSRPGRESDSEAEDFEHSKK---RIICVAILHLGGQ--FEKFFN-------- 464
A RI+ R ++S+S F + +++ AI GGQ + +F
Sbjct: 128 TA-RIMAKRPFD-KKSNSAL--FRAVGEGNAQLV--AIF--GGQGNTDDYFEELRDLYQT 179
Query: 465 ----VQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGT------ 514
V D++ L + L+ +D E+ + G+N + W + T
Sbjct: 180 YHVLVGDLIKFSAETL--SELIRTT-LDA--EKVFTQ-GLNILE--WLENPSNTPDKDYL 231
Query: 515 ----------GLLRLHSTYRHDLKI--YSSDEGRVQMSAA-AFAKGLLDLEGQLTPILVS 561
G+++L + Y K+ ++ E R + A ++GL+ T + ++
Sbjct: 232 LSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLV------TAVAIA 284
Query: 562 LVSKDSSMLDGLDNASIEM--------EEAKARLNEIIKSGSKMIHSNGSSDCPWMADGV 613
S + A I + EA + + + D + +
Sbjct: 285 ETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTS---------LPPSILEDS--LENNE 332
Query: 614 GLPPNASELLPKLVKLTKKVTEQVRQLAKDE-DEDLAETNPYDVIPPYDQAK-AL--GKT 669
G+P S P L + L +++ + + +TN + +P Q + +L G
Sbjct: 333 GVP---S---PMLS---------ISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAK 375
Query: 670 NIDVDRIAAGLPCGSEGFLLMYARWRKLE--------RDLYNERKERFD-----ITQIPD 716
N+ + +G P G L RK + R ++ERK +F + P
Sbjct: 376 NL----VVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SP- 426
Query: 717 VYDSCKYDLLHNA----HLNLEGLDELFKVAQLLADGVIP---NEYGINPKQKLKIGSKI 769
+ S LL A + +L + F + IP G + + L I
Sbjct: 427 -FHS---HLLVPASDLINKDLVKNNVSFNAKDI----QIPVYDTFDGSDL-RVLS--GSI 475
Query: 770 ARRL 773
+ R+
Sbjct: 476 SERI 479
Score = 50.4 bits (120), Expect = 3e-06
Identities = 75/506 (14%), Positives = 136/506 (26%), Gaps = 198/506 (39%)
Query: 637 VRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYA---- 692
+L ++ D L +T ++I Y A+ + K D +A EG + A
Sbjct: 105 AAKLLQENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 693 ------RWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGL-------DEL 739
+ +L RDLY Y DL+ + L L +++
Sbjct: 163 QGNTDDYFEEL-RDLY-------------QTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 740 FK--------------------------------VAQLLADGVIPNEYGINPKQKLKIGS 767
F V QL V G P +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE------ 262
Query: 768 KIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTR- 826
+ L G + + A ++++ + + F +
Sbjct: 263 -LRSYLKGAT------GHSQGLVTAVA------IAET-DSWES--------FFVSVRKAI 300
Query: 827 --------RS-----STTSDISMDQDDDDDKETQYRLDPKY------ANVKTPERHVR-T 866
R +T+ S+ +D ++ E P + + +V T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQDYVNKT 356
Query: 867 RLYFTSESHIH-SLMN-----VLRYCNLDESLQGEDSLVCHSALERLYKTKELD------ 914
+ + + SL+N V+ +SL G L L + LD
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVV--SGPPQSLYG---LNLT--LRKAKAPSGLDQSRIPF 409
Query: 915 -------YMSYIVLRMF---------ENTAVALEDPKRFRIEL-----------TFSRGA 947
+ L + + + +D + + TF G+
Sbjct: 410 SERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GS 466
Query: 948 DLSPLEKNDSE---------------ASSLHQEHTLPIMGPERLQEVGSYLTLEKME--- 989
DL L + SE + H L GP +G LT +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGV-LTHRNKDGTG 524
Query: 990 -KMIRPFAM---PAEDFPPPSTPAGF 1011
++I + P +D+ GF
Sbjct: 525 VRVIVAGTLDINPDDDY-------GF 543
Score = 50.0 bits (119), Expect = 4e-06
Identities = 49/333 (14%), Positives = 93/333 (27%), Gaps = 140/333 (42%)
Query: 735 GLD--ELFKVAQLL---ADGVIPNEYGI--------NPKQK-LKIGSKIARRLLGKLLID 780
G+D + K AQ + AD + YG NP + G + +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI------- 1684
Query: 781 LRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDD 840
RE ++ ++ D KTEK K+ ++ + +
Sbjct: 1685 ----RENYSAMI-FETIVDG---KLKTEKIFKEINEH-------------STSYTFRSEK 1723
Query: 841 DDDKETQYRLDPKYANVKT-P-----E----RHVRTRLYFTSESHI--HSLMNVLRYCNL 888
TQ+ T P E ++++ +++ HSL
Sbjct: 1724 GLLSATQF----------TQPALTLMEKAAFEDLKSKGLIPADATFAGHSL--------- 1764
Query: 889 DESLQGEDS-LVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGA 947
GE + L + D MS E+ +E+ F RG
Sbjct: 1765 -----GEYAALASLA-----------DVMS------IESL-----------VEVVFYRGM 1791
Query: 948 DLSPLEKNDSEASSLHQEHTLPIMGPERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPST 1007
+ D S + M V + + E ++ ++
Sbjct: 1792 TMQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVG----------- 1834
Query: 1008 PAGFTGYFAKSASVLERLVNLWPFHKNANSNGK 1040
++ ++E +VN N +
Sbjct: 1835 --------KRTGWLVE-IVNY-------NVENQ 1851
Score = 43.9 bits (103), Expect = 3e-04
Identities = 48/293 (16%), Positives = 90/293 (30%), Gaps = 91/293 (31%)
Query: 786 EEAISVAEL----------------KSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSS 829
+E + AEL DQV TE E+ +++ +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC------YLEGN------ 99
Query: 830 TTSDI-----SMDQDDDDDKETQYRLDPKY------ANVKTPERHVRTRLYFTSESHIHS 878
DI + Q++D L Y A ++ + L+
Sbjct: 100 ---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVGEGNAQ 155
Query: 879 LM-------NVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVAL 931
L+ N Y +E L LY+T Y +V + + +A L
Sbjct: 156 LVAIFGGQGNTDDY--FEE-------------LRDLYQT----YHV-LVGDLIKFSAETL 195
Query: 932 EDPKRFRIELT--FSRGADLSP-LEKNDSEASS---LHQEHTLPIMGPERLQEVGSYLTL 985
+ R ++ F++G ++ LE + L + P++G + ++ Y+
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVT 252
Query: 986 EKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAK--SASVLERLVNLWP-FHKNA 1035
K+ P E G TG+ +A + + W F +
Sbjct: 253 AKLLGF-----TPGELRSYLK---GATGHSQGLVTAVAIA-ETDSWESFFVSV 296
Score = 42.3 bits (99), Expect = 0.001
Identities = 62/429 (14%), Positives = 116/429 (27%), Gaps = 157/429 (36%)
Query: 81 SYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYG--IPVPRYALVNREVPYQELDY--- 134
S+ +L LV P + QL E++ +P P + P +
Sbjct: 12 SHGSLEHVLLV----PTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 135 ---FIEEE-------DFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGM---KEL 180
++ F +V + F + G+D H++ + KEL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 181 FR------KVGNRSSEFHPD---VRRVRREGSYIYEEFMPTGG---TDV------KVYTV 222
+ + R + + R V + + F GG TD +Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---GGQGNTDDYFEELRDLYQT 179
Query: 223 GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLL-----------TPNEKQMAR-EV-C- 268
+ S ++R E + L TP++ + + C
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 269 -IAFRQAVCGFDLLRCEG------RSYVCDVNG----------------W-SFVKNSYKY 304
I Q + G RSY+ G W SF + K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 305 YDDAACVLRKMF---LEAK--APHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQS 359
+ +F + P+ S +PP + + + ++ EG+
Sbjct: 300 -------ITVLFFIGVRCYEAYPNTS--LPPSI---LEDSLENNEGVP------------ 335
Query: 360 EELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDA 419
+P ML + + Q+QD ++
Sbjct: 336 ---------------SP----------------MLSISN---------LTQEQVQDYVNK 355
Query: 420 TRILVPRSR 428
T +P +
Sbjct: 356 TNSHLPAGK 364
Score = 32.7 bits (74), Expect = 0.79
Identities = 48/323 (14%), Positives = 91/323 (28%), Gaps = 123/323 (38%)
Query: 508 GSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDS 567
GS +G G+ DL Y + S A A+ + + D+
Sbjct: 1625 GSQEQGMGM---------DL--YKT-------SKA--AQDVWN-RA------------DN 1651
Query: 568 SMLDGLDNASIEMEEAKARLNEIIKSG--SKMIHSNGSSDCPWMADGVGLPPNASELL-- 623
D SI +I+ + + IH G G + N S ++
Sbjct: 1652 HFKDTY-GFSIL---------DIVINNPVNLTIHFGG-------EKGKRIRENYSAMIFE 1694
Query: 624 ------PKLVKLTKKVTEQVRQLA-KDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRI 676
K K+ K++ E + E L+ T + Q AL
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-------FTQP-AL---------- 1736
Query: 677 AAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV--------YDSCKYDLLHN 728
L+ A + L K + + Y + L
Sbjct: 1737 ----------TLMEKAAFEDL--------KSKG-LIPADATFAGHSLGEYAA----LASL 1773
Query: 729 AH-LNLE-GLDELFKVAQLLADGVIPNEYG--------INPKQKLKIGSKIARRLLGKLL 778
A +++E ++ +F + V +E G INP + + + ++ L ++
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR---VAASFSQEALQYVV 1830
Query: 779 IDLRNTREEAISVAELKSSQDQV 801
+ + + Q
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQY 1853
Score = 31.6 bits (71), Expect = 2.0
Identities = 46/301 (15%), Positives = 76/301 (25%), Gaps = 137/301 (45%)
Query: 242 MRNPDGKEVR--YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS--- 296
M G ++ A++V + +A D ++ D G+S
Sbjct: 1631 M----GMDLYKTSKA---------AQDV---WNRA----D-------NHFKDTYGFSILD 1663
Query: 297 FVKN------------------------SYKYYDDAACVLRKMFLEAKAPHLSSAIPPIL 332
V N ++ D K+F E H +S
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN-EHSTSYT---- 1718
Query: 333 PWKVNEPVQPTEGLTRQGSGLGT-FGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLN 391
++ L+ T F Q A+ EK
Sbjct: 1719 -FR-----SEKGLLSA------TQFTQ-------PALT---------------LMEKAAF 1744
Query: 392 LMLKYNGGRPR----A-----E-TKLKS---AVQLQDLLDATRILVPRSRPGRESDSEAE 438
LK G P A E L S + ++ L++ +V R G
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VV-FYR-GMTMQVAVP 1798
Query: 439 DFEHSKKRIICVAILHLGGQFEKFFNVQDV-------------LLSIQCHLLLANL-VSG 484
E + +AI G+ F+ + + L+ I N V
Sbjct: 1799 RDELGRSNYGMIAI--NPGRVAASFSQEALQYVVERVGKRTGWLVEI------VNYNVEN 1850
Query: 485 Q 485
Q
Sbjct: 1851 Q 1851
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.001
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 19/48 (39%)
Query: 974 ERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASV 1021
E+ Q L+K++ ++ +A S PA A A++
Sbjct: 18 EK-QA------LKKLQASLKLYA-------DDSAPA-----LAIKATM 46
Score = 35.3 bits (80), Expect = 0.034
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 38/68 (55%)
Query: 512 EGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 571
E L +L ++ LK+Y+ D SA A A I
Sbjct: 18 EKQALKKLQAS----LKLYADD------SAPALA------------I------------- 42
Query: 572 GLDNASIE 579
A++E
Sbjct: 43 ---KATME 47
Score = 28.4 bits (62), Expect = 7.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 798 QDQVSKSTKTEKEDKDY-P---PKLFIKA 822
+ Q K K + K Y P L IKA
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKA 44
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 38.3 bits (88), Expect = 0.011
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 518 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 571
+ Y L +++S+ GRV ++ FA+G + + + +++S+D+ M
Sbjct: 143 AFRTKYGELFDTNDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIISEDADMGA 202
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 37.6 bits (87), Expect = 0.019
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 44/153 (28%)
Query: 99 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 158
D+ K+ + K G+ + V ++ +EE P + KP
Sbjct: 136 NARDKNKMRDAFNKAGVKSIKNKRVTTL---EDFRAALEEIGT----------PLILKPT 182
Query: 159 HGDDHSIMIYYPSSAGGGM---------KELFRKVGNRSSEFHPDVRRVRREGSYIYEEF 209
+ ++ G+ ++ F +V + + + V E +I EEF
Sbjct: 183 YL-----------ASSIGVTLITDTETAEDEFNRVNDYLKSINVP-KAVTFEAPFIAEEF 230
Query: 210 MP-TGGTDVKVYTVGPEYAHAEARKSPVVDGVV 241
+ G + + ++G++
Sbjct: 231 LQGEYGDWYQTEGYSDYIS---------IEGIM 254
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 36.7 bits (85), Expect = 0.032
Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 44/210 (20%)
Query: 88 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGN 147
+V+ L D+ +YE + GI R E E
Sbjct: 100 TVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASF---EEALAAGEVQL------ 150
Query: 148 RFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 207
P KP +G SA + + E + + I +
Sbjct: 151 ----PVFVKPRNG-----------SASIEV-----RRVETVEEVE---QLFSKNTDLIVQ 187
Query: 208 EFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 264
E + V Y + K + G + + V + ++
Sbjct: 188 ELLVGQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDK---SRSVLRDDVF-----ELV 239
Query: 265 REVCIAFR-QAVCGFDLLRCEGRSYVCDVN 293
V FDL G Y+ ++N
Sbjct: 240 EHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 35.0 bits (80), Expect = 0.099
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 357 GQSEELRCVIAVMRHGDRTP 376
G S +L V + RHGDR P
Sbjct: 3 GYSSKLIFVSMITRHGDRAP 22
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 35.1 bits (80), Expect = 0.12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 360 EELRCVIAVMRHGDRTP 376
+EL+ V V RHGDR+P
Sbjct: 1 KELKFVTLVFRHGDRSP 17
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 34.6 bits (80), Expect = 0.16
Identities = 21/157 (13%), Positives = 39/157 (24%), Gaps = 54/157 (34%)
Query: 99 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 158
+ D+ K+ E +KY + R+ +V EL +E P + K
Sbjct: 106 MCGDKYKMKEAFKKYNVNTARHFVVRN---ENELKNALENLKL----------PVIVKAT 152
Query: 159 HGDDHSIMIYYPSSAGGGMKELFRKVGNRS--SEFHPDVRRVRREGSYIYEEFMPTGGTD 216
G+ + + + + I EEF+
Sbjct: 153 D-----------LQGSKGI----YIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE----- 192
Query: 217 VKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYP 253
G E+ V +V +
Sbjct: 193 ------GYEFG---------AQAFV----YKNDVLFV 210
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 34.5 bits (78), Expect = 0.19
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 514 TGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL----------LDLEGQLTPILVSL 562
G+++ D + Y++ R +A F G + G + P +
Sbjct: 69 QGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPV 128
Query: 563 VSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDC 606
++ +S ++E E K +L E K +M + S C
Sbjct: 129 ITDNSPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSC 172
Score = 33.3 bits (75), Expect = 0.38
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 361 ELRCVIAVMRHGDRTP 376
+L V+ + R R P
Sbjct: 6 QLEQVLIMSRANLRAP 21
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 34.1 bits (77), Expect = 0.25
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 355 TFGQSEELRCVIAVMRHGDRTP 376
+ +L V+ + RHG R P
Sbjct: 9 PPPRDWQLEKVVELSRHGIRPP 30
Score = 33.3 bits (75), Expect = 0.43
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 506 WWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 548
G H GLL+ + + +S R + +A A G
Sbjct: 70 EEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGA 112
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 33.4 bits (75), Expect = 0.44
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 361 ELRCVIAVMRHGDRTP 376
+L V+ V R G R P
Sbjct: 7 KLESVVIVSRAGVRAP 22
Score = 31.5 bits (70), Expect = 1.7
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 506 WWGSHSEGTGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL 548
+ GLL + + I + + R + + AFA GL
Sbjct: 61 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGL 104
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.62
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 74 YPLEKAESYATLR-----KPF--LVNELEPQHLLHDRRKV----YEQLEKYGIPVPRYAL 122
Y E E+ P +V+ LE +K YE E I +P
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELP---- 179
Query: 123 VNREVPYQELDYFIEEEDFVEVHGNRFW 150
E+ + E + D V+ +
Sbjct: 180 -PNEILFSENNDMDNNNDGVDELNKKCT 206
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 33.0 bits (75), Expect = 0.69
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 110 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 169
L+K G VP+ + + + E+ V KP
Sbjct: 497 LQKAGFNVPQSVEFTSLE--KAVASYALFENR----------AVVIKPKST--------- 535
Query: 170 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 228
+ G G+ + V NR +F + RE + E+++ GT+ + + +G E
Sbjct: 536 --NYGLGITIFQQGVQNR-EDFAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLA 590
Query: 229 AEARKSPVV--DGV 240
R V D V
Sbjct: 591 VLLRVPANVVGDSV 604
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 32.5 bits (73), Expect = 0.88
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 518 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 571
+ Y H + +SS GRV +A F +G L + + D
Sbjct: 132 DYKARYGHLWNGETVVPFFSSGYGRVIETARKFGEGFFGYNYSTNAALNIISESEVMGAD 191
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.7 bits (72), Expect = 1.7
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 188 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG 247
+ + +RR R + +G V+ Y + + A +++ N D
Sbjct: 2 AKNHYDILRRHIRSEDLLETPEFGSGSRIVEEYWIQEPFTKA----------IIVENEDE 51
Query: 248 KEVRYPVL---LTPNEKQMAREV 267
Y L ++ E ++ +
Sbjct: 52 FRNVYYALEPTVSSEEAEVISAL 74
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 31.0 bits (70), Expect = 2.6
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 34/140 (24%)
Query: 110 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 169
L++ P P +E F ++ KP V KP + + I
Sbjct: 492 LDEKHFPTPFGDEFTDR---KEA-----LNYFSQIQD----KPIVVKPKST-NFGLGI-- 536
Query: 170 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 228
+F+ N + + + E S + EE++ GT+ + + + +
Sbjct: 537 ---------SIFKTSANL-ASYEKAIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIA 584
Query: 229 AEARKSPVVDGVVMRNPDGK 248
R + V G DG
Sbjct: 585 VLLRVAANVVG------DGI 598
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 30.7 bits (68), Expect = 2.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 524 RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 554
I SS RV S F +G + +
Sbjct: 130 NIVPFIRSSGSSRVIASGKKFIEGFQSTKLK 160
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 29.8 bits (68), Expect = 4.4
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 110 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 160
+ G+PV + + R ++ D + P + KP
Sbjct: 104 WQGAGLPVAPWVALTRA------EFEKGLSDKQLAEISALGLPVIVKPSRE 148
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 30.0 bits (67), Expect = 4.9
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 577 SIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQ 636
S E + + + M+ +S A + L SE++P L +
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 637 VRQLAKDEDEDLAETNPYDVIPPY 660
VR LA + ++A+ P + +
Sbjct: 219 VRLLAVEACVNIAQLLPQEDLEAL 242
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 29.7 bits (66), Expect = 5.6
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 909 KTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPLEKNDSEASSLHQEHTL 968
+ + L +++ + K + + F ++ LE + + E L
Sbjct: 46 TLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYL 105
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 5.9
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 700 DLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGV 750
DL ++ I + Y + YD+ + + + L ++ D
Sbjct: 128 DLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI---IPHFQDKT 175
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 28.7 bits (65), Expect = 8.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 663 AKALGKTNIDVDRIAAGLPCGSEGFLLMYA 692
+ L + RIA G+P G L Y
Sbjct: 155 QRLLEPLGAAISRIAYGVPVGGS---LEYT 181
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.0 bits (66), Expect = 8.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 110 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 160
L GI P + + + ED ++ P V KP G
Sbjct: 105 LRYEGIETPDWIELTK------------MEDLNFDELDKLGFPLVVKPNSG 143
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 29.1 bits (64), Expect = 9.6
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 524 RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQL 555
I +S RV S F +G +
Sbjct: 129 SVVPFIRASGSDRVIASGEKFIEGFQQAKLAD 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,249,956
Number of extensions: 1031775
Number of successful extensions: 2525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2503
Number of HSP's successfully gapped: 62
Length of query: 1040
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 937
Effective length of database: 3,825,930
Effective search space: 3584896410
Effective search space used: 3584896410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)